Citrus Sinensis ID: 047302

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MDSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPESNSQIRRNVG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccEEEccccccccccHHHHccccccEEccccccccccccccccccccccccccEEEccccccccccccccccEEEccccccccccccccHHHHHHHHHccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHcccccccEEEEEEEccccccHEcHHHHHccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHccccHHHHHcccEEEEccccHHHHccccccHHHcccHHHHHHcccccccHHccccccccEEEEccccccccccccccHHHHHHHHHHHcccccHHHHHHHcc
Coil and Loop (DISEMBL)
MDSHLEKLTILmdkgpndvrmIGICDMGGIGKVALAKIVsrdhgtygtsvgtsiVGNCYKRIANLERFWGSMKSLTMLILDgtairelplsVEYLTGLFvlnfkdwqnleclpspisenlgkvdsleeldiSGTAIRQLSRLCsltkwdlsdcnlpveggeiprDICYLCLlfkdepesnSQIRRNVG
Flexible Loop (DISEMBL)
MDSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSrdhgtygtsvgtsivgnCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLfkdepesnsqirrnvg
Low Complexity Region (SEG)
MDSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPESNSQIRRNVG
Disordered region (IsUnstruct)
*******LTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFK**************
Disordered Region (DISOPRED)
***HLEKLTILMDK*PNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPESNSQIRRNVG
Disordered Region (DISEMBL)
MDSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPE**********
Disordered Region (DISPRO)
**SHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPESNS*I*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPESNSQIRRNVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.590	0.108	0.302	3e-05

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 18/129 (13%)

Query: 62  IANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLG 121
           +A L   +G++ +L  + L  T +R+LP S+  L  L  L+ +D   L  LP+    + G
Sbjct: 394 LAKLPADFGALGNLAHVSLSNTKLRDLPASIGNLFTLKTLSLQDNPKLGSLPA----SFG 449

Query: 122 KVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKD 175
           ++  L+EL ++G  I +L      S L +LT  D +   LP + G + R++ +L L    
Sbjct: 450 QLSGLQELTLNGNRIHELPSMGGASSLQTLTVDDTALAGLPADFGAL-RNLAHLSL---- 504

Query: 176 EPESNSQIR 184
              SN+Q+R
Sbjct: 505 ---SNTQLR 510

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.
Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
224116210	1017	tir-nbs-lrr resistance protein [Populus	0.553	0.102	0.384	8e-12
224114331	1119	tir-nbs-lrr resistance protein [Populus	0.595	0.100	0.356	7e-10
224120756	813	hypothetical protein POPTRDRAFT_838042 [	0.542	0.125	0.362	1e-09
224146780	540	predicted protein [Populus trichocarpa]	0.414	0.144	0.387	1e-08
224116238	955	tir-nbs-lrr resistance protein [Populus	0.595	0.117	0.339	1e-08
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.367	0.057	0.426	1e-08
105922722	1446	TIR-NBS-TIR type disease resistance prot	0.595	0.077	0.339	2e-08
224108373	1279	tir-nbs-lrr resistance protein [Populus	0.542	0.079	0.350	3e-08
224116202	1098	tir-nbs-lrr resistance protein [Populus	0.409	0.070	0.42	3e-08
224120770	1120	tir-nbs-lrr resistance protein [Populus	0.595	0.1	0.345	7e-08

>gi|224116210|ref|XP_002331988.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832112|gb|EEE70589.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 74/156 (47%), Gaps = 52/156 (33%)

Query: 63  ANLERF---WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSP---- 115
           + LERF    G+M  L +L LDGT I EL  S+ +L GL +L+  + +NLE +PS     
Sbjct: 467 SKLERFPDIVGNMNCLMVLRLDGTGIAELSSSIRHLIGLGLLSMTNCKNLESIPSSIGCL 526

Query: 116 ----------------ISENLGKVDSLEELDISGTAIRQ--------------------- 138
                           I ENLGKV+SLEE D+SGT+IRQ                     
Sbjct: 527 KSLKKLDLSCCSALKNIPENLGKVESLEEFDVSGTSIRQLPASVFLLKNLKVLSLDGCKR 586

Query: 139 ------LSRLCSLTKWDLSDCNLPVEGGEIPRDICY 168
                 LSRLCSL    L  CNL    GE+P DI Y
Sbjct: 587 IVVLPSLSRLCSLEVLGLRACNL--REGELPEDIGY 620

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114331|ref|XP_002332400.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832723|gb|EEE71200.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 69.3 bits (168), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 62/174 (35%), Positives = 77/174 (44%), Gaps = 62/174 (35%)

Query: 49  SVGTSIVGNCYKRIANLERF---WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKD 105
           S+   I+  C K    LE+F    G+M  L +L LDGT I EL  S+ +L GL VL+ K 
Sbjct: 538 SLKVCILDGCSK----LEKFPDIVGNMNCLMVLRLDGTGIEELSSSIHHLIGLEVLSMKT 593

Query: 106 WQNLECLPSP--------------------ISENLGKVDSLEELDISGTAIRQ------- 138
            +NL+ +PS                     I ENLGKV+SLEE D+SGT+IRQ       
Sbjct: 594 CKNLKSIPSSIGCLKSLKKLDLFGCSEFENIPENLGKVESLEEFDVSGTSIRQPPASIFL 653

Query: 139 --------------------------LSRLCSLTKWDLSDCNLPVEGGEIPRDI 166
                                     LS LCSL   DL  CNL    G +P DI
Sbjct: 654 LKNLKVLSFDGCKRIAESLTDQRLPSLSGLCSLEVLDLCACNL--REGALPEDI 705

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120756|ref|XP_002330944.1| hypothetical protein POPTRDRAFT_838042 [Populus trichocarpa] gi|222873138|gb|EEF10269.1| hypothetical protein POPTRDRAFT_838042 [Populus trichocarpa]

 Score = 68.6 bits (166), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 70/160 (43%), Gaps = 58/160 (36%)

Query: 63  ANLERF---WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSP---- 115
             LE+F    G+M  L  L LDGT I EL  S+ +L GL VL+  + +NLE +PS     
Sbjct: 548 TKLEKFPDIVGNMNCLMELCLDGTGIAELSSSIHHLIGLEVLSMNNCKNLESIPSSIGCL 607

Query: 116 ----------------ISENLGKVDSLEELDISGTAIRQ--------------------- 138
                           I ENLGKV+SLEE D+SGT+IRQ                     
Sbjct: 608 KSLKKLDLSGCSELKNIPENLGKVESLEEFDVSGTSIRQPPASIFLLKSLKVLSFDGCKR 667

Query: 139 ------------LSRLCSLTKWDLSDCNLPVEGGEIPRDI 166
                       LS LCSL   DL  CNL    G +P DI
Sbjct: 668 IAVNPTDQRLPSLSGLCSLEVLDLCACNL--REGALPEDI 705

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146780|ref|XP_002336335.1| predicted protein [Populus trichocarpa] gi|222834747|gb|EEE73210.1| predicted protein [Populus trichocarpa]

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 20/98 (20%)

Query: 61  RIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPIS--- 117
           ++       G+ K L  L LD T+I ELP S++YL GL  L+ KD + L CLPS I+   
Sbjct: 52  KLKEFPEIEGNKKCLRKLCLDQTSIEELPPSIQYLVGLISLSLKDCKKLSCLPSSINGLK 111

Query: 118 -----------------ENLGKVDSLEELDISGTAIRQ 138
                            EN G+++ L ELD+SGTAIR+
Sbjct: 112 SLKTLHLSGCSELENLPENFGQLECLNELDVSGTAIRE 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116238|ref|XP_002331995.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832119|gb|EEE70596.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 77/174 (44%), Gaps = 62/174 (35%)

Query: 49  SVGTSIVGNCYKRIANLERF---WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKD 105
           S+   I+  C K    LE+F    G+M  LT+L LD T I +L  S+ +L GL VL+  +
Sbjct: 658 SLKVCILDGCSK----LEKFPDIVGNMNKLTVLHLDETGITKLSSSIHHLIGLEVLSMNN 713

Query: 106 WQNLECLPSP--------------------ISENLGKVDSLEELDISGTAIRQ------- 138
            +NLE +PS                     I +NLGKV+ LEE+D+SGT+IRQ       
Sbjct: 714 CKNLESIPSSIRCLKSLKKLDLSGCSELQNIPQNLGKVEGLEEIDVSGTSIRQPPASIFL 773

Query: 139 --------------------------LSRLCSLTKWDLSDCNLPVEGGEIPRDI 166
                                     LS LCSL   DL  CNL    G +P DI
Sbjct: 774 LKSLKVLSLDGCKRIAVNPTGDRLPSLSGLCSLEVLDLCACNL--REGALPEDI 825

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 65.1 bits (157), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 50/89 (56%), Gaps = 20/89 (22%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPIS------------ 117
           G+ K L  L LD T+I ELP S++YL GL  L+ KD + L CLPS I+            
Sbjct: 734 GNKKCLRKLCLDQTSIEELPPSIQYLVGLISLSLKDCKKLSCLPSSINGLKSLKTLHLSG 793

Query: 118 --------ENLGKVDSLEELDISGTAIRQ 138
                   EN G+++ L ELD+SGTAIR+
Sbjct: 794 CSELENLPENFGQLECLNELDVSGTAIRE 822

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922722|gb|ABF81433.1| TIR-NBS-TIR type disease resistance protein [Populus trichocarpa]

 Score = 64.3 bits (155), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 77/174 (44%), Gaps = 62/174 (35%)

Query: 49  SVGTSIVGNCYKRIANLERF---WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKD 105
           S+   I+  C K    LE+F    G+M  LT+L LD T I +L  S+ +L GL VL+  +
Sbjct: 727 SLKVCILDGCSK----LEKFPDIVGNMNKLTVLHLDETGITKLSSSIHHLIGLEVLSMNN 782

Query: 106 WQNLECLPSP--------------------ISENLGKVDSLEELDISGTAIRQ------- 138
            +NLE +PS                     I +NLGKV+ LEE+D+SGT+IRQ       
Sbjct: 783 CKNLESIPSSIRCLKSLKKLDLSGCSELQNIPQNLGKVEGLEEIDVSGTSIRQPPASIFL 842

Query: 139 --------------------------LSRLCSLTKWDLSDCNLPVEGGEIPRDI 166
                                     LS LCSL   DL  CNL    G +P DI
Sbjct: 843 LKSLKVLSLDGCKRIAVNPTGDRLPSLSGLCSLEVLDLCACNL--REGALPEDI 894

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108373|ref|XP_002333401.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222836441|gb|EEE74848.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 63.9 bits (154), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 70/154 (45%), Gaps = 52/154 (33%)

Query: 63  ANLERF---WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI--- 116
           + LE+F    G+M  L +L LD T I +L  S+ YL GL +L+  + +NL+ +PS I   
Sbjct: 717 SKLEKFPDIAGNMNCLMVLRLDETGITKLSSSIHYLIGLGLLSMNNCKNLKSIPSSIGCL 776

Query: 117 -----------------SENLGKVDSLEELDISGTAIRQ--------------------- 138
                             ENLGKV+SLEE D+SGT+IRQ                     
Sbjct: 777 KSLKKLDLSGCSELKYIPENLGKVESLEEFDVSGTSIRQLPASVFLLKKLKVLSLDGCKR 836

Query: 139 ------LSRLCSLTKWDLSDCNLPVEGGEIPRDI 166
                 LS LCSL    L  CNL    G +P DI
Sbjct: 837 IVVLPSLSGLCSLEVLGLRSCNL--REGALPEDI 868

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116202|ref|XP_002331986.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222832110|gb|EEE70587.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 23/100 (23%)

Query: 63  ANLERF---WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSP---- 115
           + LE+F    G+M  L +L LD T+I +LP S+ +L GL +L+    +NLE +PS     
Sbjct: 548 SKLEKFPDIIGNMNCLMVLRLDETSITKLPSSIHHLIGLGLLSMNSCKNLESIPSSIGCL 607

Query: 116 ----------------ISENLGKVDSLEELDISGTAIRQL 139
                           I ENLGKV+SLEE D+SGT IRQL
Sbjct: 608 KSLKKLDLSGCSELKCIPENLGKVESLEEFDVSGTLIRQL 647

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120770|ref|XP_002330947.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222873141|gb|EEF10272.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 62.8 bits (151), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 75/168 (44%), Gaps = 56/168 (33%)

Query: 49  SVGTSIVGNCYKRIANLERF---WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKD 105
           S+   I+  C K    LE+F    G+MK L +L LDGT I +L  S+ +L GL +L+   
Sbjct: 538 SLKVCILDGCSK----LEKFPDIVGNMKCLMVLRLDGTGITKLSSSMHHLIGLGLLSMNS 593

Query: 106 WQNLECLPSP--------------------ISENLGKVDSLEELDISGTAIRQ------- 138
            +NLE +PS                     I E LG+V+SLEE D+SGT+IRQ       
Sbjct: 594 CKNLESIPSSIGCLKSLKKLDLSGCSELKYIPEKLGEVESLEEFDVSGTSIRQLPASIFL 653

Query: 139 --------------------LSRLCSLTKWDLSDCNLPVEGGEIPRDI 166
                               LS LCSL    L  CNL    G +P DI
Sbjct: 654 LKNLKVLSLDGFKRIVMPPSLSGLCSLEVLGLCACNL--REGALPEDI 699

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.207	0.034	0.461	1.3e-07
TAIR|locus:2173293	1059	AT5G38340 [Arabidopsis thalian	0.265	0.047	0.411	6.4e-07
TAIR|locus:2081790	1253	AT3G51560 [Arabidopsis thalian	0.409	0.061	0.371	1.4e-06
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.468	0.063	0.336	1.4e-06
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.414	0.061	0.375	1.9e-06
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.638	0.102	0.357	2e-06
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.617	0.099	0.330	2e-06
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.606	0.095	0.295	2.2e-06
TAIR|locus:2133662	853	AT4G09360 [Arabidopsis thalian	0.228	0.050	0.454	8.6e-06
TAIR|locus:2155189	980	AT5G49140 [Arabidopsis thalian	0.340	0.065	0.369	9.1e-06

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 101 (40.6 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
 Identities = 18/39 (46%), Positives = 29/39 (74%)

Query:     1 MDSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIV 39
             +D+HLEK+  L++ G N VR++GI  MGG+GK  +A+ +
Sbjct:   191 IDTHLEKIESLLEIGINGVRIMGIWGMGGVGKTTIARAI 229

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2173293 AT5G38340 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
 Identities = 21/51 (41%), Positives = 34/51 (66%)

Query:     1 MDSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIV-SRDHGTYGTSV 50
             M++H+EK+  L+    N+V+MIGI    GIGK  +A+++ +R  G +G SV
Sbjct:   234 MEAHMEKMKSLLSLHSNEVKMIGIWGPSGIGKTTIARVLYNRFSGDFGLSV 284

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081790 AT3G51560 [Arabidopsis thaliana (taxid:3702)]

 Score = 108 (43.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 29/78 (37%), Positives = 49/78 (62%)

Query:    63 ANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK 122
             + LE   G  ++L  L L GTAI+E+   +++L+ L VL+ ++ + L+ LP  IS NL  
Sbjct:   792 SELEDIQGIPRNLEELYLAGTAIQEVTSLIKHLSELVVLDLQNCKRLQHLPMEIS-NLKS 850

Query:   123 VDSLEELDISGTAIRQLS 140
             + +L+  D SG +IR++S
Sbjct:   851 LVTLKLTDPSGMSIREVS 868

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
 Identities = 33/98 (33%), Positives = 53/98 (54%)

Query:    61 RIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLP-SPISEN 119
             +I  L    G++KSL  L LD TA++ LP S+  L      N +D   + C   S I ++
Sbjct:   799 KIQELPLCIGTLKSLEKLYLDDTALKNLPSSIGDLK-----NLQDLHLVRCTSLSKIPDS 853

Query:   120 LGKVDSLEELDISGTAIRQL----SRLCSLTKWDLSDC 153
             + ++ SL++L I+G+A+ +L    S L SL  +   DC
Sbjct:   854 INELKSLKKLFINGSAVEELPLKPSSLPSLYDFSAGDC 891

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 33/88 (37%), Positives = 50/88 (56%)

Query:    48 TSVG--TSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKD 105
             T VG  T I+ NC    +  + F    K+L  L LDGTAI+ELP ++  L  L  L  KD
Sbjct:   729 TLVGLRTLILSNC----SRFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQKLISLKLKD 784

Query:   106 WQNLECLPSPISENLGKVDSLEELDISG 133
              +NL  LP    +++G + +++E+ +SG
Sbjct:   785 CKNLLSLP----DSIGNLKAIQEIILSG 808

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 50/140 (35%), Positives = 71/140 (50%)

Query:     9 TILMDKGPNDVRMIGICDMGGI-GKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER 67
             T+L+  GP ++  +   ++ G  G  +L KI  R       S+ T I+ NC    +NLE 
Sbjct:   703 TLLL--GPENMASLVFLNLKGCTGLESLPKINLR-------SLKTLILSNC----SNLEE 749

Query:    68 FWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE 127
             FW   ++L  L LDGTAI+ LP  +  LT L  L  KD + L  LP    E   K+  L+
Sbjct:   750 FWVISETLYTLYLDGTAIKTLPQDMVKLTSLVKLYMKDCEMLVKLP----EEFDKLKVLQ 805

Query:   128 ELDISGTAIRQLSRLCSLTK 147
             EL  SG   ++LS L  + K
Sbjct:   806 ELVCSGC--KRLSSLPDVMK 823

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
 Identities = 44/133 (33%), Positives = 70/133 (52%)

Query:    48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQ 107
             TS+ T  + NC    +N + F    ++L  L LDGT+I +LP +V  L  L +LN KD +
Sbjct:   705 TSLKTLTLSNC----SNFKEFPLIPENLKALYLDGTSISQLPDNVGNLKRLVLLNMKDCK 760

Query:   108 NLECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEI---PR 164
              LE +P+ +SE    + +L++L +SG +  +L     + K  L    L ++G  I   P+
Sbjct:   761 VLETIPTCVSE----LKTLQKLVLSGCS--KLKEFPEINKSSLKI--LLLDGTSIKTMPQ 812

Query:   165 --DICYLCLLFKD 175
                + YLCL   D
Sbjct:   813 LPSVQYLCLSRND 825

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 102 (41.0 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
 Identities = 36/122 (29%), Positives = 61/122 (50%)

Query:    49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQN 108
             S+ +  + NC K +  L+   G ++SLT L+ D TA+RE+P ++  L  L  L+    + 
Sbjct:   696 SLESLFLSNCSK-LERLDDALGELESLTTLLADFTALREIPSTINQLKKLKRLSLNGCKG 754

Query:   109 L--ECLPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIP--R 164
             L  + + +  SE    V  L  + +SG       R+ SL   +LSD  +P + G +   R
Sbjct:   755 LLSDDIDNLYSEKSHSVSLLRPVSLSGLTYM---RILSLGYCNLSDELIPEDIGSLSFLR 811

Query:   165 DI 166
             D+
Sbjct:   812 DL 813

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2133662 AT4G09360 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query:     1 MDSHLEKLTILMD-KGPNDVRMIGICDMGGIGKVALAKIVSRDH 43
             MD  +E+L  L+  +  N+VRMIGI  MGGIGK  +AK +  ++
Sbjct:     1 MDVDMERLNPLLSIESENEVRMIGIWGMGGIGKTTIAKCLYEEY 44

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155189 AT5G49140 [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 9.1e-06, Sum P(2) = 9.1e-06
 Identities = 24/65 (36%), Positives = 39/65 (60%)

Query:     1 MDSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIV-SRDHGTYGTSVGTSIVGNCY 59
             ++SH+EK+  L+    +DVRM+GI    GIGK  +A+++ SR  G +  +V    V   Y
Sbjct:   189 IESHMEKMVQLLCLNDDDVRMVGIWGPAGIGKTTIARVLHSRFSGDFRFTVFMENVRGNY 248

Query:    60 KRIAN 64
             +RI +
Sbjct:   249 QRIVD 253

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 74  SLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDIS 132
           +++ L L  T I E+P  +E  + L  L+     NL+     +S N+ K+  LE +D S
Sbjct: 847 NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR----VSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.52
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.37
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.34
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.34
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.13
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.12
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.93
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.73
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.73
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.69
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.68
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.61
PLN03150	623	hypothetical protein; Provisional	98.58
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.51
PLN03150	623	hypothetical protein; Provisional	98.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.49
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.4
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.4
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.34
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.34
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.32
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.28
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.23
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.18
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.12
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.9
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.85
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.81
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.8
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.8
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.73
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.66
PRK15386	426	type III secretion protein GogB; Provisional	97.63
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.42
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.19
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.18
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.15
PRK15386	426	type III secretion protein GogB; Provisional	97.07
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.98
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.95
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.91
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.82
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.81
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.34
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.29
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.01
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.48
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	95.39
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.96
smart00370	26	LRR Leucine-rich repeats, outliers.	93.69
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.69
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.92
smart00370	26	LRR Leucine-rich repeats, outliers.	92.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.29
KOG4341	483	consensus F-box protein containing LRR [General fu	92.0
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.74
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	91.57
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.97
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.94
KOG3864	221	consensus Uncharacterized conserved protein [Funct	88.36
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.47
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.35
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	81.68

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=6.1e-17  Score=115.07  Aligned_cols=130  Identities=22%  Similarity=0.323  Sum_probs=95.5

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+.+++.|.++.  +.+..+|..+..+.+|+.|++++|+++++|.+++.+++|+.|+++.|. +..+    |.+++.++.
T Consensus        31 ~~s~ITrLtLSH--NKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~l----prgfgs~p~  103 (264)
T KOG0617|consen   31 NMSNITRLTLSH--NKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNIL----PRGFGSFPA  103 (264)
T ss_pred             chhhhhhhhccc--CceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcC----ccccCCCch
Confidence            567777888888  788888887788888888888888888888888888888888888876 5555    556688888


Q ss_pred             ccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCCchhhhcc
Q 047302          126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPESNSQIRRN  186 (188)
Q Consensus       126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~~~~l~~L  186 (188)
                      |..|+++.|++.+-      ..++.|+.|.+++|.+..    +|..++++++|         +-.+|.+++.+++|
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe~----lp~dvg~lt~lqil~lrdndll~lpkeig~lt~l  175 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI----LPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRL  175 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc----CChhhhhhcceeEEeeccCchhhCcHHHHHHHHH
Confidence            88888888877664      234455666666666665    66666666655         44466666665554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.52  E-value=3e-15  Score=124.46  Aligned_cols=133  Identities=25%  Similarity=0.373  Sum_probs=91.1

Q ss_pred             eecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCC----CCccCCC---------
Q 047302           49 SVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQ----NLECLPS---------  114 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~----~l~~l~~---------  114 (188)
                      +.-+|++|+  |.|+.+|. .+.++.-|-.|++++|+++.+|+.+..+..|+.|.+++|.    .+..+|.         
T Consensus       127 n~iVLNLS~--N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  127 NSIVLNLSY--NNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             CcEEEEccc--CccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            333445554  45555553 2234445555555555555566666666666666666653    0111111         


Q ss_pred             ------------cc-------------------ccccCCCCcccEEEccCCccccc----CCCCCCCEeccCCCCCCCCC
Q 047302          115 ------------PI-------------------SENLGKVDSLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEG  159 (188)
Q Consensus       115 ------------~~-------------------~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~  159 (188)
                                  ++                   |+-+.++++|+.|++++|.|+++    +.+.+|++|+++.|+++.  
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~--  282 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTV--  282 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhcc--
Confidence                        00                   66677888899999999999888    778889999999999998  


Q ss_pred             CCCChhhHHHhhh-----------hhcCCCCchhhhccc
Q 047302          160 GEIPRDICYLCLL-----------FKDEPESNSQIRRNV  187 (188)
Q Consensus       160 ~~lp~~l~~l~~L-----------~~~lp~~~~~l~~L~  187 (188)
                        +|+.+++|++|           |..+|+.|+.|.+|+
T Consensus       283 --LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Le  319 (1255)
T KOG0444|consen  283 --LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLE  319 (1255)
T ss_pred             --chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhH
Confidence              99999888877           889999999998874

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.37  E-value=9.4e-14  Score=98.94  Aligned_cols=112  Identities=24%  Similarity=0.343  Sum_probs=100.2

Q ss_pred             cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc----CCCCCC
Q 047302           70 GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL----SRLCSL  145 (188)
Q Consensus        70 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L  145 (188)
                      -.+.+++.|.++.|++..+|+.+.++.+|++|++++|+ ++++|.    .++.+++|+.|++.-|++..+    +.++.|
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~----~issl~klr~lnvgmnrl~~lprgfgs~p~l  104 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPT----SISSLPKLRILNVGMNRLNILPRGFGSFPAL  104 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcCh----hhhhchhhhheecchhhhhcCccccCCCchh
Confidence            56788999999999999999999999999999999998 888854    459999999999998877555    899999


Q ss_pred             CEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCCchhhhcccC
Q 047302          146 TKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPESNSQIRRNVG  188 (188)
Q Consensus       146 ~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~~~~l~~L~~  188 (188)
                      +.||+.+|++.+  ..+|..+-+++.|         |+.+|..++++++||+
T Consensus       105 evldltynnl~e--~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqi  154 (264)
T KOG0617|consen  105 EVLDLTYNNLNE--NSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQI  154 (264)
T ss_pred             hhhhcccccccc--ccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeE
Confidence            999999999998  8899988777766         8999999999999984

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.34  E-value=2.2e-12  Score=115.84  Aligned_cols=59  Identities=14%  Similarity=0.147  Sum_probs=23.3

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCC
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDW  106 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~  106 (188)
                      +++|++|++++| .....+|..+.++++|++|++++|.+. .+|..++.+++|+.|++++|
T Consensus       163 l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  222 (968)
T PLN00113        163 FSSLKVLDLGGN-VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN  222 (968)
T ss_pred             CCCCCEEECccC-cccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence            344444444442 212233333344444444444444333 33333444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.34  E-value=1.7e-12  Score=116.56  Aligned_cols=131  Identities=26%  Similarity=0.307  Sum_probs=82.3

Q ss_pred             CceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcC
Q 047302           17 NDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYL   95 (188)
Q Consensus        17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l   95 (188)
                      +++..+..++++++.....   ++..+ ..+++|++|++++| .....+|..+.++++|+.|++++|++. .+|..++.+
T Consensus       161 ~~l~~L~~L~L~~n~l~~~---~p~~~-~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  235 (968)
T PLN00113        161 GSFSSLKVLDLGGNVLVGK---IPNSL-TNLTSLEFLTLASN-QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL  235 (968)
T ss_pred             hcCCCCCEEECccCccccc---CChhh-hhCcCCCeeeccCC-CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence            3445566666665443221   11111 25778888888885 444567777788888888888888776 677778888


Q ss_pred             CCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCC
Q 047302           96 TGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus        96 ~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~  156 (188)
                      ++|++|++++|. +..   .+|..++.+++|+.|++++|.+.+.     ..+++|+.|++++|.+.
T Consensus       236 ~~L~~L~L~~n~-l~~---~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        236 TSLNHLDLVYNN-LTG---PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             CCCCEEECcCce-ecc---ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            888888888775 321   1244456666667777666665432     44555666666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.18  E-value=5.7e-12  Score=100.16  Aligned_cols=61  Identities=20%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             CcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCC
Q 047302           44 GTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        44 ~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~  107 (188)
                      ..++.++.+||+.+  |.++++|+.++.+++|.+||+++|.|..+|.+++++ +|+.|.+.||.
T Consensus       248 ~~~L~~l~vLDLRd--Nklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  248 LKHLNSLLVLDLRD--NKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             hcccccceeeeccc--cccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc
Confidence            34788999999999  899999999999999999999999999999999999 89999988886

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.13  E-value=4.3e-11  Score=86.71  Aligned_cols=103  Identities=21%  Similarity=0.282  Sum_probs=27.8

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcccccc-CCCCc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENL-GKVDS  125 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l-~~l~~  125 (188)
                      ...+++|++++  +.++.+...-..+.+++.|++++|.|+.++ ++..++.|+.|++++|. +..+.    +.+ ..+++
T Consensus        18 ~~~~~~L~L~~--n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~----~~l~~~lp~   89 (175)
T PF14580_consen   18 PVKLRELNLRG--NQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSIS----EGLDKNLPN   89 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-C----HHHHHH-TT
T ss_pred             ccccccccccc--cccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccc----cchHHhCCc
Confidence            34556666666  455554432124556666666666666554 45556666666666665 44432    112 23556


Q ss_pred             ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.|++++|.|.++      ..+++|+.|++.+|.+.+
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            66666666665554      455666666666666554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.12  E-value=5.8e-12  Score=105.21  Aligned_cols=133  Identities=23%  Similarity=0.250  Sum_probs=75.4

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL  126 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L  126 (188)
                      +++|++|.+++..-.+..+|..+..+.+|+.++++.|.+..+|..+.++.+|+.|++++|. ++++....    +.+.+|
T Consensus       196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~----~~W~~l  270 (1255)
T KOG0444|consen  196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTE----GEWENL  270 (1255)
T ss_pred             chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccH----HHHhhh
Confidence            3444455555430112445655666666666666666666666666666666666666665 55554333    455566


Q ss_pred             cEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCCchhhhcc
Q 047302          127 EELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPESNSQIRRN  186 (188)
Q Consensus       127 ~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~~~~l~~L  186 (188)
                      .+|+++.|.+..+    ..++.|+.|...+|+++-  ..+|.++++|..|         +.-+|+.+-+|.+|
T Consensus       271 EtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F--eGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL  341 (1255)
T KOG0444|consen  271 ETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF--EGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKL  341 (1255)
T ss_pred             hhhccccchhccchHHHhhhHHHHHHHhccCcccc--cCCccchhhhhhhHHHHhhccccccCchhhhhhHHH
Confidence            6666666665555    455556666666665554  5566666665555         34455555444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.08  E-value=1.2e-11  Score=98.43  Aligned_cols=154  Identities=27%  Similarity=0.349  Sum_probs=94.0

Q ss_pred             ceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCC
Q 047302           18 DVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTG   97 (188)
Q Consensus        18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~   97 (188)
                      ++..+.++.+.+....+.+.++-     .+..++.++.+.  +.+.++|+.+.....+..++.+.|++.++|++++.+-.
T Consensus        66 nL~~l~vl~~~~n~l~~lp~aig-----~l~~l~~l~vs~--n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~  138 (565)
T KOG0472|consen   66 NLACLTVLNVHDNKLSQLPAAIG-----ELEALKSLNVSH--NKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD  138 (565)
T ss_pred             cccceeEEEeccchhhhCCHHHH-----HHHHHHHhhccc--chHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence            44556666666555444443321     344444444444  44444444444444455555555544444444444444


Q ss_pred             CcEEEccCCCCCccCCCcc------------------------------------------ccccCCCCcccEEEccCCc
Q 047302           98 LFVLNFKDWQNLECLPSPI------------------------------------------SENLGKVDSLEELDISGTA  135 (188)
Q Consensus        98 L~~L~l~~~~~l~~l~~~~------------------------------------------~~~l~~l~~L~~L~l~~~~  135 (188)
                      ++.++...|+ +..+|.++                                          |+.++.+.+|..|++..|.
T Consensus       139 l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  139 LEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNK  217 (565)
T ss_pred             hhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcc
Confidence            4444444433 33333322                                          6667777777777777776


Q ss_pred             cccc---------------------------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCC
Q 047302          136 IRQL---------------------------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPES  179 (188)
Q Consensus       136 i~~~---------------------------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~  179 (188)
                      |+.+                           .+++++.+||+++|++++    +|.+++.+++|         +..+|-+
T Consensus       218 i~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke----~Pde~clLrsL~rLDlSNN~is~Lp~s  293 (565)
T KOG0472|consen  218 IRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE----VPDEICLLRSLERLDLSNNDISSLPYS  293 (565)
T ss_pred             cccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc----CchHHHHhhhhhhhcccCCccccCCcc
Confidence            6554                           588999999999999999    99999988877         7788888


Q ss_pred             chhh
Q 047302          180 NSQI  183 (188)
Q Consensus       180 ~~~l  183 (188)
                      ++++
T Consensus       294 Lgnl  297 (565)
T KOG0472|consen  294 LGNL  297 (565)
T ss_pred             cccc
Confidence            8887

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=6.7e-10  Score=80.52  Aligned_cols=121  Identities=20%  Similarity=0.254  Sum_probs=55.2

Q ss_pred             EEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhh-hcCCCCcE
Q 047302           22 IGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSV-EYLTGLFV  100 (188)
Q Consensus        22 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~  100 (188)
                      +..+++.|.+-.++...     +..+.+|+.|++++  |.++.++. +..+++|+.|++++|+|..+++.+ ..+++|+.
T Consensus        21 ~~~L~L~~n~I~~Ie~L-----~~~l~~L~~L~Ls~--N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   21 LRELNLRGNQISTIENL-----GATLDKLEVLDLSN--NQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             ---------------S-------TT-TT--EEE-TT--S--S--TT-----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccch-----hhhhcCCCEEECCC--CCCccccC-ccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            45566666554444321     12478999999999  79988874 578999999999999999997665 46899999


Q ss_pred             EEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--------CCCCCCCEeccCCC
Q 047302          101 LNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--------SRLCSLTKWDLSDC  153 (188)
Q Consensus       101 L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~  153 (188)
                      |++++|. +..+.. + ..+..+++|+.|++.+|++.+.        ..+|+|+.||-..-
T Consensus        93 L~L~~N~-I~~l~~-l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   93 LYLSNNK-ISDLNE-L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             EE-TTS----SCCC-C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             EECcCCc-CCChHH-h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            9999997 666533 2 4567899999999999999876        78999999986533

>PLN03210 Resistant to P

Probab=98.93  E-value=3.9e-09  Score=96.61  Aligned_cols=82  Identities=28%  Similarity=0.399  Sum_probs=51.7

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCc-cCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+++|+.+++++| +.++.+|. +..+++|+.|++.+| .+..+|..++.+++|+.|++++|..+..+|..    + .++
T Consensus       632 ~l~~Lk~L~Ls~~-~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i-~l~  704 (1153)
T PLN03210        632 SLTGLRNIDLRGS-KNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG----I-NLK  704 (1153)
T ss_pred             cCCCCCEEECCCC-CCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc----C-CCC
Confidence            4667777777765 55666664 356677777777766 45567777777777777777776656555422    1 445


Q ss_pred             cccEEEccCC
Q 047302          125 SLEELDISGT  134 (188)
Q Consensus       125 ~L~~L~l~~~  134 (188)
                      +|+.|++++|
T Consensus       705 sL~~L~Lsgc  714 (1153)
T PLN03210        705 SLYRLNLSGC  714 (1153)
T ss_pred             CCCEEeCCCC
Confidence            5555555555

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=98.93  E-value=3.7e-09  Score=96.75  Aligned_cols=25  Identities=20%  Similarity=0.259  Sum_probs=14.2

Q ss_pred             CCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          144 SLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       144 ~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +|+.|++++|.++.    +|..+..+++|
T Consensus       847 nL~~L~Ls~n~i~~----iP~si~~l~~L  871 (1153)
T PLN03210        847 NISDLNLSRTGIEE----VPWWIEKFSNL  871 (1153)
T ss_pred             ccCEeECCCCCCcc----ChHHHhcCCCC
Confidence            45555555555555    66665555554

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.92  E-value=4.1e-11  Score=99.28  Aligned_cols=104  Identities=23%  Similarity=0.237  Sum_probs=55.4

Q ss_pred             cccceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           45 TYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        45 ~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      +.+.+++.++++.  |.+.++.+ .+-+++.|+.|+++.|.|+.+ +..+...++|++|+++.|. +++++   +..+..
T Consensus       266 y~l~kme~l~L~~--N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-i~~l~---~~sf~~  339 (873)
T KOG4194|consen  266 YGLEKMEHLNLET--NRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-ITRLD---EGSFRV  339 (873)
T ss_pred             eeecccceeeccc--chhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccc-cccCC---hhHHHH
Confidence            3456666666666  55555443 334566666666666666544 4456666666666666665 55554   222344


Q ss_pred             CCcccEEEccCCccccc-----CCCCCCCEeccCCCC
Q 047302          123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCN  154 (188)
Q Consensus       123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~  154 (188)
                      +..|+.|+++.|+++.+     ..+.+|++|||+.|.
T Consensus       340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe
Confidence            44455555555554443     344444444444443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.81  E-value=1.6e-08  Score=88.22  Aligned_cols=60  Identities=25%  Similarity=0.253  Sum_probs=40.8

Q ss_pred             CcccEEEccCCccccc-CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh------hhcCCCCchhhhccc
Q 047302          124 DSLEELDISGTAIRQL-SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL------FKDEPESNSQIRRNV  187 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L------~~~lp~~~~~l~~L~  187 (188)
                      .+|+.|++++|.++.+ ...++|+.|++++|.++.    +|.....|..|      +..+|+++.++.+|+
T Consensus       382 ~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Lss----IP~l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~  448 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTS----LPMLPSGLLSLSVYRNQLTRLPESLIHLSSET  448 (788)
T ss_pred             cccceEEecCCcccCCCCcccCCCEEEccCCcCCC----CCcchhhhhhhhhccCcccccChHHhhccCCC
Confidence            3567777887777766 333468888888888776    66655556555      666777777666553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.78  E-value=8.2e-09  Score=85.94  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=88.8

Q ss_pred             cccceecEEEEcccccccccccccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           45 TYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        45 ~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      +++++|+.+.+..  |.++.+|.......+++.|++..|.|..+. +.++-++.|+++|++.|. +.+++..   .+..-
T Consensus        99 ~nl~nLq~v~l~~--N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-is~i~~~---sfp~~  172 (873)
T KOG4194|consen   99 YNLPNLQEVNLNK--NELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-ISEIPKP---SFPAK  172 (873)
T ss_pred             hcCCcceeeeecc--chhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-hhcccCC---CCCCC
Confidence            4788888888888  788888877666677888888888887664 457778888899998886 6666421   23344


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhh-HHHhhh
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDI-CYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l-~~l~~L  172 (188)
                      .++++|++++|+|+.+     ..+.+|.+|.|+.|.++.    +|... +.|+.|
T Consensus       173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNritt----Lp~r~Fk~L~~L  223 (873)
T KOG4194|consen  173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITT----LPQRSFKRLPKL  223 (873)
T ss_pred             CCceEEeeccccccccccccccccchheeeecccCcccc----cCHHHhhhcchh
Confidence            6788999999998887     566678888899998887    88753 335554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.73  E-value=2.9e-08  Score=86.74  Aligned_cols=56  Identities=27%  Similarity=0.352  Sum_probs=35.5

Q ss_pred             CcccEEEccCCccccc--CCCCCCCEeccCCCCCCCCCCCCChhhH-HHhhh------hhcCCCCchhh
Q 047302          124 DSLEELDISGTAIRQL--SRLCSLTKWDLSDCNLPVEGGEIPRDIC-YLCLL------FKDEPESNSQI  183 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~--~~l~~L~~L~l~~~~l~~~~~~lp~~l~-~l~~L------~~~lp~~~~~l  183 (188)
                      ++|+.|++++|.++.+  .-.++|+.|++++|+++.    +|..+. .+..|      +..+|..+..+
T Consensus       346 ~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~----LP~~l~~sL~~LdLs~N~L~~LP~sl~~~  410 (754)
T PRK15370        346 PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTN----LPENLPAALQIMQASRNNLVRLPESLPHF  410 (754)
T ss_pred             CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCC----CCHhHHHHHHHHhhccCCcccCchhHHHH
Confidence            4677777777777655  223468888888888876    776653 34444      55666655443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.73  E-value=2.9e-09  Score=82.35  Aligned_cols=107  Identities=22%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcc----------
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI----------  116 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~----------  116 (188)
                      ...|+.+|+|+  |.|+.+.+.+.-.+.++.|+++.|.+..+. .+..+.+|+.|++++|. +.++....          
T Consensus       283 Wq~LtelDLS~--N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  283 WQELTELDLSG--NLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             Hhhhhhccccc--cchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccch-hHhhhhhHhhhcCEeeee
Confidence            35678889998  788888887777888999999999987776 47888899999999886 54442211          


Q ss_pred             --------ccccCCCCcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          117 --------SENLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       117 --------~~~l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                              ..+++++.+|..|++++|+|+.+      +.+|.|+++.+.+|.+..
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence                    12344455555555555555544      555566666666665554

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.69  E-value=3.6e-08  Score=86.08  Aligned_cols=50  Identities=20%  Similarity=0.350  Sum_probs=25.7

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCC
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDW  106 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~  106 (188)
                      +|+.|+++.  |.++.+|..   +++|++|++++|++..+|..   .++|+.|++.+|
T Consensus       223 ~L~~L~L~~--N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N  272 (788)
T PRK15387        223 HITTLVIPD--NNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN  272 (788)
T ss_pred             CCCEEEccC--CcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence            455566665  455555532   34566666666666555432   234444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=2e-08  Score=60.16  Aligned_cols=56  Identities=14%  Similarity=0.294  Sum_probs=24.8

Q ss_pred             eecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCC
Q 047302           49 SVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDW  106 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~  106 (188)
                      +|+++++++  +.++.+| ..+..+++|++|++++|++..+++ .+..+++|+++++++|
T Consensus         2 ~L~~L~l~~--n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSN--NKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETS--STESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCC--CCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            344445544  3444444 233444444444444444444432 2344444444444444

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=3.8e-10  Score=93.20  Aligned_cols=128  Identities=26%  Similarity=0.364  Sum_probs=74.6

Q ss_pred             ceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302           48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE  127 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~  127 (188)
                      .+|..+.++.  |.+..+|+.++.+..|++++++.|++..+|..+-.++ |+++.+++|+ ++.+    |+.++....|.
T Consensus        98 ~~Le~liLy~--n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~l----p~~ig~~~tl~  169 (722)
T KOG0532|consen   98 VSLESLILYH--NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSL----PEEIGLLPTLA  169 (722)
T ss_pred             HHHHHHHHHh--ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccC----CcccccchhHH
Confidence            3445555555  5666666666666667777777777766666555554 6666666665 5555    34446566666


Q ss_pred             EEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh--------hhcCCCCchhhhccc
Q 047302          128 ELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL--------FKDEPESNSQIRRNV  187 (188)
Q Consensus       128 ~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L--------~~~lp~~~~~l~~L~  187 (188)
                      .|+.+.|.+..+    +.+.+|+.|.+..|++..    +|..+..|+-.        +..||-++.++++||
T Consensus       170 ~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~----lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq  237 (722)
T KOG0532|consen  170 HLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED----LPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQ  237 (722)
T ss_pred             HhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh----CCHHHhCCceeeeecccCceeecchhhhhhhhhe
Confidence            677777666555    455555555555555554    55555544433        444555555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.68  E-value=1.1e-07  Score=83.09  Aligned_cols=97  Identities=16%  Similarity=0.261  Sum_probs=64.7

Q ss_pred             ceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302           48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE  127 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~  127 (188)
                      ++++.|++++  |.+..+|..+.  .+|+.|++++|++..+|..+.  .+|+.|++++|. +.++|..+      ..+|+
T Consensus       199 ~~L~~L~Ls~--N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l------~s~L~  265 (754)
T PRK15370        199 EQITTLILDN--NELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERL------PSALQ  265 (754)
T ss_pred             cCCcEEEecC--CCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhH------hCCCC
Confidence            4677888887  67777776433  478888888888877776543  467778887776 66554332      13677


Q ss_pred             EEEccCCccccc-CCC-CCCCEeccCCCCCCC
Q 047302          128 ELDISGTAIRQL-SRL-CSLTKWDLSDCNLPV  157 (188)
Q Consensus       128 ~L~l~~~~i~~~-~~l-~~L~~L~l~~~~l~~  157 (188)
                      .|++++|.++.+ ..+ ++|+.|++++|+++.
T Consensus       266 ~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~  297 (754)
T PRK15370        266 SLDLFHNKISCLPENLPEELRYLSVYDNSIRT  297 (754)
T ss_pred             EEECcCCccCccccccCCCCcEEECCCCcccc
Confidence            777777777655 222 367777777777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.65  E-value=4.4e-09  Score=91.14  Aligned_cols=49  Identities=24%  Similarity=0.352  Sum_probs=31.5

Q ss_pred             cCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          120 LGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       120 l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +..+..|+.|+++.|++..+     ..+..|+.|++++|.++.    +|..+..+..|
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~----Lp~tva~~~~L  432 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT----LPDTVANLGRL  432 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh----hhHHHHhhhhh
Confidence            45566677777777766655     566667777777777776    66665554444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.61  E-value=1.1e-08  Score=88.72  Aligned_cols=101  Identities=22%  Similarity=0.241  Sum_probs=73.3

Q ss_pred             ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      ++.+|+.|++++  |.+..+|. .+.++..|+.|+++||+++.+|..+-.+..|++|..-+|+ +..+    | .+..++
T Consensus       381 ~~~hLKVLhLsy--NrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~f----P-e~~~l~  452 (1081)
T KOG0618|consen  381 NFKHLKVLHLSY--NRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSF----P-ELAQLP  452 (1081)
T ss_pred             cccceeeeeecc--cccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeec----h-hhhhcC
Confidence            456777777777  66666663 4466777777777777777777777777777777777765 4444    4 457788


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCC
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCN  154 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~  154 (188)
                      +|+.+|++.|.++..     -..++|++||+++|.
T Consensus       453 qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            899999999988876     233689999999985

>PLN03150 hypothetical protein; Provisional

Probab=98.58  E-value=2e-07  Score=80.36  Aligned_cols=100  Identities=23%  Similarity=0.348  Sum_probs=60.8

Q ss_pred             ecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302           50 VGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE  128 (188)
Q Consensus        50 L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~  128 (188)
                      ++.|+++++ ..-..+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|. +.   ..+|+.++.+++|+.
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-ls---g~iP~~l~~L~~L~~  494 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FN---GSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEECCCC-CccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CC---CCCchHHhcCCCCCE
Confidence            556666663 222456666667777777777777765 666667777777777777765 22   223555567777777


Q ss_pred             EEccCCccccc------CCCCCCCEeccCCCC
Q 047302          129 LDISGTAIRQL------SRLCSLTKWDLSDCN  154 (188)
Q Consensus       129 L~l~~~~i~~~------~~l~~L~~L~l~~~~  154 (188)
                      |++++|.++..      ....++..+++.+|.
T Consensus       495 L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        495 LNLNGNSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             EECcCCcccccCChHHhhccccCceEEecCCc
Confidence            77777766543      112344556666554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.51  E-value=1.9e-07  Score=55.80  Aligned_cols=60  Identities=25%  Similarity=0.428  Sum_probs=51.7

Q ss_pred             CCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCcc
Q 047302           73 KSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAI  136 (188)
Q Consensus        73 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i  136 (188)
                      ++|++|++++|++..+|+ .+..+++|+++++++|. +..++   |..+..+++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~---~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIP---PDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEE---TTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccC---HHHHcCCCCCCEEeCcCCcC
Confidence            478999999999999975 57889999999999997 77665   34578999999999999975

...

>PLN03150 hypothetical protein; Provisional

Probab=98.50  E-value=3.6e-07  Score=78.90  Aligned_cols=89  Identities=27%  Similarity=0.360  Sum_probs=76.0

Q ss_pred             CccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCE
Q 047302           74 SLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTK  147 (188)
Q Consensus        74 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~  147 (188)
                      .++.|++++|.+. .+|..+..+++|+.|++++|. +.   ..+|..++.+++|+.|++++|.++..     +.+++|+.
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-l~---g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~  494 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IR---GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRI  494 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-cc---CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCE
Confidence            3788999999997 789999999999999999997 43   23366679999999999999998764     78999999


Q ss_pred             eccCCCCCCCCCCCCChhhHHH
Q 047302          148 WDLSDCNLPVEGGEIPRDICYL  169 (188)
Q Consensus       148 L~l~~~~l~~~~~~lp~~l~~l  169 (188)
                      |++++|++.   +.+|..+..+
T Consensus       495 L~Ls~N~l~---g~iP~~l~~~  513 (623)
T PLN03150        495 LNLNGNSLS---GRVPAALGGR  513 (623)
T ss_pred             EECcCCccc---ccCChHHhhc
Confidence            999999988   5688887653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.49  E-value=2.5e-07  Score=72.93  Aligned_cols=16  Identities=25%  Similarity=0.472  Sum_probs=7.4

Q ss_pred             CCCcccEEEccCCccc
Q 047302          122 KVDSLEELDISGTAIR  137 (188)
Q Consensus       122 ~l~~L~~L~l~~~~i~  137 (188)
                      .+++|+.|++++|.++
T Consensus       219 ~~~~L~~L~ls~n~l~  234 (319)
T cd00116         219 SLKSLEVLNLGDNNLT  234 (319)
T ss_pred             ccCCCCEEecCCCcCc
Confidence            3444444444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.40  E-value=4.1e-07  Score=71.75  Aligned_cols=135  Identities=19%  Similarity=0.108  Sum_probs=78.6

Q ss_pred             eeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccc-----cccccccCC-CCccEEeecCccCc-----c
Q 047302           19 VRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIA-----NLERFWGSM-KSLTMLILDGTAIR-----E   87 (188)
Q Consensus        19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~-----~l~~~~~~l-~~L~~L~l~~~~i~-----~   87 (188)
                      ...+..+++.++................ ++|+.|++++|  .+.     .+...+..+ ++|+.+++++|.+.     .
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~--~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNN--GLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCC--ccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            3455556666544332111111111112 55888888875  332     223344555 77888888888775     2


Q ss_pred             cchhhhcCCCCcEEEccCCCCCccC-CCccccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302           88 LPLSVEYLTGLFVLNFKDWQNLECL-PSPISENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus        88 lp~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~  157 (188)
                      ++..+..+++|+.|++++|. +..- ...++..+..+++|+.|++++|.+.+.         ..+++|++|++++|.+.+
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~  235 (319)
T cd00116         157 LAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD  235 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence            34445666788888888875 4310 011123345556888888888876543         566778888888887763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.40  E-value=1.6e-07  Score=83.39  Aligned_cols=85  Identities=24%  Similarity=0.235  Sum_probs=67.4

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .++.|++||+++| ..+.++|..++++-+|++|+++++.+.++|.+++++..|.+|++..+..+...    |.....+.+
T Consensus       569 ~m~~LrVLDLs~~-~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~----~~i~~~L~~  643 (889)
T KOG4658|consen  569 SLPLLRVLDLSGN-SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI----PGILLELQS  643 (889)
T ss_pred             hCcceEEEECCCC-CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc----cchhhhccc
Confidence            5888999999987 77788898888899999999999999999989999999999988876544443    233456888


Q ss_pred             ccEEEccCCc
Q 047302          126 LEELDISGTA  135 (188)
Q Consensus       126 L~~L~l~~~~  135 (188)
                      |++|.+....
T Consensus       644 Lr~L~l~~s~  653 (889)
T KOG4658|consen  644 LRVLRLPRSA  653 (889)
T ss_pred             ccEEEeeccc
Confidence            8888776554

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.34  E-value=1.2e-07  Score=78.81  Aligned_cols=100  Identities=30%  Similarity=0.377  Sum_probs=50.9

Q ss_pred             ecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEE
Q 047302           50 VGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL  129 (188)
Q Consensus        50 L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L  129 (188)
                      |+++.+++  |.++.+|+.++...+|..|+.+.|++..+|..++.+.+|+.+.+..|. +..+    |+.+..++ |..|
T Consensus       145 Lkvli~sN--Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~l----p~El~~Lp-Li~l  216 (722)
T KOG0532|consen  145 LKVLIVSN--NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDL----PEELCSLP-LIRL  216 (722)
T ss_pred             ceeEEEec--CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhC----CHHHhCCc-eeee
Confidence            44444544  445555544444445555555555555555555555555555555554 3333    23334333 5555


Q ss_pred             EccCCccccc----CCCCCCCEeccCCCCCCC
Q 047302          130 DISGTAIRQL----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       130 ~l~~~~i~~~----~~l~~L~~L~l~~~~l~~  157 (188)
                      |++.|+++.+    .++..|++|-|.+|.+++
T Consensus       217 DfScNkis~iPv~fr~m~~Lq~l~LenNPLqS  248 (722)
T KOG0532|consen  217 DFSCNKISYLPVDFRKMRHLQVLQLENNPLQS  248 (722)
T ss_pred             ecccCceeecchhhhhhhhheeeeeccCCCCC
Confidence            5555555554    555555555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.34  E-value=2.6e-07  Score=75.35  Aligned_cols=115  Identities=28%  Similarity=0.364  Sum_probs=72.1

Q ss_pred             cceecEEEEcccccccccccccccCCC-CccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMK-SLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+.++.+++.+  +.+..++......+ +|+.|+++.|.+.++|..+..++.|+.|+++.|+ +..++    ...+..++
T Consensus       115 ~~~l~~L~l~~--n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~----~~~~~~~~  187 (394)
T COG4886         115 LTNLTSLDLDN--NNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLP----KLLSNLSN  187 (394)
T ss_pred             ccceeEEecCC--cccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhh----hhhhhhhh
Confidence            34566667766  56666666555553 7777777777777776667777777777777776 55553    22246667


Q ss_pred             ccEEEccCCccccc-C---CCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          126 LEELDISGTAIRQL-S---RLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~-~---~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      |+.|++++|.++++ .   ....|+++.++.|...+    .+..+..+..+
T Consensus       188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~----~~~~~~~~~~l  234 (394)
T COG4886         188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIE----LLSSLSNLKNL  234 (394)
T ss_pred             hhheeccCCccccCchhhhhhhhhhhhhhcCCccee----cchhhhhcccc
Confidence            77777777777666 1   33347777777774333    45555554444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.32  E-value=2e-07  Score=74.41  Aligned_cols=63  Identities=17%  Similarity=0.211  Sum_probs=36.2

Q ss_pred             cEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCc
Q 047302           51 GTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSP  115 (188)
Q Consensus        51 ~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~  115 (188)
                      ..+.+..  |.|+.+|+ .+..+++|++|+++.|+|+.+ |..+..+..+..|-+.++..++.++..
T Consensus        70 veirLdq--N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   70 VEIRLDQ--NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             eEEEecc--CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            3455666  56666653 446666666666666666655 444566666655555553335555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.28  E-value=2.7e-07  Score=75.24  Aligned_cols=106  Identities=22%  Similarity=0.334  Sum_probs=66.0

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcc------------
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI------------  116 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~------------  116 (188)
                      +|+.+++++  +.+..+|..+..+++|+.|+++.|++.++|...+..+.|+.+++++|. +..+|..+            
T Consensus       141 nL~~L~l~~--N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~  217 (394)
T COG4886         141 NLKELDLSD--NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLS  217 (394)
T ss_pred             hcccccccc--cchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhc
Confidence            677777777  666666555566777777777777777777655567777777777775 55554321            


Q ss_pred             -------ccccCCCCcccEEEccCCccccc----CCCCCCCEeccCCCCCCC
Q 047302          117 -------SENLGKVDSLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       117 -------~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~  157 (188)
                             +..+..+.++..+.+.+|.+...    ..+++++.|++++|.+++
T Consensus       218 ~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         218 NNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             CCcceecchhhhhcccccccccCCceeeeccchhccccccceeccccccccc
Confidence                   22234444444555555554431    566667777777777776

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.25  E-value=3.7e-07  Score=70.90  Aligned_cols=81  Identities=23%  Similarity=0.344  Sum_probs=61.7

Q ss_pred             cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc----CCCCCC
Q 047302           70 GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL----SRLCSL  145 (188)
Q Consensus        70 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L  145 (188)
                      ..+..|+.+++++|.|..+.++..-.+.+++|+++.|. +.++     .++..+++|+.|++++|.++..    ..+.++
T Consensus       281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v-----~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNI  354 (490)
T KOG1259|consen  281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTV-----QNLAELPQLQLLDLSGNLLAECVGWHLKLGNI  354 (490)
T ss_pred             chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeee-----hhhhhcccceEeecccchhHhhhhhHhhhcCE
Confidence            44568999999999999999899989999999999997 6554     4468899999999999976665    334444


Q ss_pred             CEeccCCCCCC
Q 047302          146 TKWDLSDCNLP  156 (188)
Q Consensus       146 ~~L~l~~~~l~  156 (188)
                      .+|.++.|.+.
T Consensus       355 KtL~La~N~iE  365 (490)
T KOG1259|consen  355 KTLKLAQNKIE  365 (490)
T ss_pred             eeeehhhhhHh
Confidence            44444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.23  E-value=1.5e-06  Score=48.39  Aligned_cols=34  Identities=29%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             CccEEeecCccCcccchhhhcCCCCcEEEccCCC
Q 047302           74 SLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        74 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~  107 (188)
                      +|++|++++|+|+.+|+.++++++|+.|++++|.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            5666666666666666556666666666666665

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.18  E-value=4.2e-07  Score=72.67  Aligned_cols=103  Identities=20%  Similarity=0.241  Sum_probs=80.5

Q ss_pred             cccccccccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccC-Cccc
Q 047302           60 KRIANLERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISG-TAIR  137 (188)
Q Consensus        60 ~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~-~~i~  137 (188)
                      ..+.++|..+  ......+++..|+|..+|+. |+.+++|++++++.|. +..+.   |+.+..+.++..|.+.+ |+|+
T Consensus        56 ~GL~eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~---p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   56 KGLTEVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIA---PDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             CCcccCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccc-hhhcC---hHhhhhhHhhhHHHhhcCCchh
Confidence            5677777532  24678899999999999864 8899999999999997 77664   66678888888877666 8899


Q ss_pred             cc-----CCCCCCCEeccCCCCCCCCCCCCCh-hhHHHhhh
Q 047302          138 QL-----SRLCSLTKWDLSDCNLPVEGGEIPR-DICYLCLL  172 (188)
Q Consensus       138 ~~-----~~l~~L~~L~l~~~~l~~~~~~lp~-~l~~l~~L  172 (188)
                      ++     +.+.+++.|.+.-|++..    ++. .+..|+++
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~C----ir~~al~dL~~l  166 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINC----IRQDALRDLPSL  166 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcc----hhHHHHHHhhhc
Confidence            98     788888888888887774    443 45666665

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.14  E-value=3.6e-06  Score=46.82  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=34.6

Q ss_pred             ceecEEEEcccccccccccccccCCCCccEEeecCccCcccc
Q 047302           48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP   89 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp   89 (188)
                      ++|++|++++  +.++.+|..+.++++|+.|++++|++..++
T Consensus         1 ~~L~~L~l~~--N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSN--NQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETS--SS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccC--CCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4789999999  799999987899999999999999998876

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.13  E-value=1.7e-06  Score=75.18  Aligned_cols=130  Identities=21%  Similarity=0.252  Sum_probs=92.7

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccc--ccccccccCCCCccEEeecCccCcccchhhhcCCC
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRI--ANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTG   97 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i--~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~   97 (188)
                      ..+..++++|....  ...-...++..+++|+.|.+.+  -.+  +++.....++++|..||++++++..+ .+++.+++
T Consensus       122 ~nL~~LdI~G~~~~--s~~W~~kig~~LPsL~sL~i~~--~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn  196 (699)
T KOG3665|consen  122 QNLQHLDISGSELF--SNGWPKKIGTMLPSLRSLVISG--RQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN  196 (699)
T ss_pred             HhhhhcCccccchh--hccHHHHHhhhCcccceEEecC--ceecchhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence            44556666664433  2222334455789999999987  444  44555668899999999999999988 58999999


Q ss_pred             CcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----------CCCCCCCEeccCCCCCCC
Q 047302           98 LFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus        98 L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----------~~l~~L~~L~l~~~~l~~  157 (188)
                      |++|.+.+-. +.... . -..+..+.+|+.||++...-...           ..+|.|+.||.++..+..
T Consensus       197 Lq~L~mrnLe-~e~~~-~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  197 LQVLSMRNLE-FESYQ-D-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             HHHHhccCCC-CCchh-h-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            9999887643 33211 1 13568899999999987753332           679999999999887664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.12  E-value=8.9e-07  Score=72.92  Aligned_cols=103  Identities=28%  Similarity=0.277  Sum_probs=63.9

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL  126 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L  126 (188)
                      +..++.+.+..  +.+......+..+.+++.+++.+|.|+.+...+..+.+|++|++++|. +..+     ..+..+..|
T Consensus        71 l~~l~~l~l~~--n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-----~~l~~l~~L  142 (414)
T KOG0531|consen   71 LTSLKELNLRQ--NLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-----EGLSTLTLL  142 (414)
T ss_pred             hHhHHhhccch--hhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-----cchhhccch
Confidence            44555555555  555543343466667777777777776666446667777777777775 4444     334555667


Q ss_pred             cEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          127 EELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       127 ~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      +.|++.+|.|+.+   ..++.|+.+++++|.+..
T Consensus       143 ~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~  176 (414)
T KOG0531|consen  143 KELNLSGNLISDISGLESLKSLKLLDLSYNRIVD  176 (414)
T ss_pred             hhheeccCcchhccCCccchhhhcccCCcchhhh
Confidence            7777777776666   446667777777776665

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.12  E-value=3e-07  Score=63.59  Aligned_cols=111  Identities=15%  Similarity=0.177  Sum_probs=81.3

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccc-cCCCCccEEeecCccCcccchhhhcCCCC
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFW-GSMKSLTMLILDGTAIRELPLSVEYLTGL   98 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L   98 (188)
                      ..+..++++.|.-.-+++++|...  ....|...++++  |.++.+|+.+ .+++.++.+++++|++.++|..+-.++.|
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~--~~~el~~i~ls~--N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL  102 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLS--KGYELTKISLSD--NGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL  102 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHh--CCceEEEEeccc--chhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence            445556666665555677777653  367888888998  7888888644 56678889999999999999888889999


Q ss_pred             cEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc
Q 047302           99 FVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL  139 (188)
Q Consensus        99 ~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  139 (188)
                      +.++++.|. +...    |..+..+.++..|+..+|.+.++
T Consensus       103 r~lNl~~N~-l~~~----p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  103 RSLNLRFNP-LNAE----PRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             hhcccccCc-cccc----hHHHHHHHhHHHhcCCCCccccC
Confidence            999998887 5555    34445577777787777766555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.10  E-value=5.3e-06  Score=60.87  Aligned_cols=101  Identities=17%  Similarity=0.257  Sum_probs=79.7

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcC-CCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYL-TGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ......+|+++  |.+..++.. ..++.|..|.+.+|+|..+.+.+..+ ++|+.|.+.+|. +.++..-  +.+..++.
T Consensus        41 ~d~~d~iDLtd--Ndl~~l~~l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl--~pLa~~p~  114 (233)
T KOG1644|consen   41 LDQFDAIDLTD--NDLRKLDNL-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDL--DPLASCPK  114 (233)
T ss_pred             ccccceecccc--cchhhcccC-CCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhc--chhccCCc
Confidence            45667788998  677666643 77889999999999999887777765 679999999997 7776432  34567889


Q ss_pred             ccEEEccCCccccc--------CCCCCCCEeccCCC
Q 047302          126 LEELDISGTAIRQL--------SRLCSLTKWDLSDC  153 (188)
Q Consensus       126 L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~  153 (188)
                      |++|.+-+|++.+.        ..+++|++||.+.=
T Consensus       115 L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  115 LEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            99999999998776        68889999998754

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.90  E-value=1.8e-05  Score=58.11  Aligned_cols=100  Identities=14%  Similarity=0.176  Sum_probs=75.6

Q ss_pred             cEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEE
Q 047302           51 GTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD  130 (188)
Q Consensus        51 ~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~  130 (188)
                      +.+++.+  ..+..+...-....+...+++++|.+..++ .+..++.|.+|.+.+|. ++.+...+   -..+++|+.|.
T Consensus        22 ~e~~LR~--lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L---~~~~p~l~~L~   94 (233)
T KOG1644|consen   22 RELDLRG--LKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDL---DTFLPNLKTLI   94 (233)
T ss_pred             ccccccc--ccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccch---hhhccccceEE
Confidence            3455655  444333332234467888999999998776 67889999999999997 77774322   24568899999


Q ss_pred             ccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          131 ISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       131 l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      +.+|+|+++      ..++.|+.|.+-+|.++.
T Consensus        95 LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~  127 (233)
T KOG1644|consen   95 LTNNSIQELGDLDPLASCPKLEYLTLLGNPVEH  127 (233)
T ss_pred             ecCcchhhhhhcchhccCCccceeeecCCchhc
Confidence            999998887      788999999999998775

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.88  E-value=7.2e-06  Score=67.56  Aligned_cols=103  Identities=26%  Similarity=0.265  Sum_probs=82.8

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+.++..+++.+  +.++.+...+..+.+|++|++++|.|..+. ++..+..|+.|++.+|. +..+     .++..+.+
T Consensus        93 ~~~~l~~l~l~~--n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~-----~~~~~l~~  163 (414)
T KOG0531|consen   93 KLKSLEALDLYD--NKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDI-----SGLESLKS  163 (414)
T ss_pred             cccceeeeeccc--cchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhc-----cCCccchh
Confidence            578899999998  788888775688999999999999998887 67788889999999997 6554     34456888


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.+++++|.+...     ..+.+++.+.+..|.+..
T Consensus       164 L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  164 LKLLDLSYNRIVDIENDELSELISLEELDLGGNSIRE  200 (414)
T ss_pred             hhcccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence            89999999987665     245567778888887664

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.85  E-value=3.5e-05  Score=68.83  Aligned_cols=99  Identities=24%  Similarity=0.332  Sum_probs=56.0

Q ss_pred             ceecEEEEcccccc--ccccc-ccccCCCCccEEeecCc-cCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           48 TSVGTSIVGNCYKR--IANLE-RFWGSMKSLTMLILDGT-AIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        48 ~~L~~L~l~~~~~~--i~~l~-~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      +.|+.|-+..  +.  +..++ +++..|+.|+.||+++| .+..+|..++++-+|++|++++.. +..+    |.+++++
T Consensus       545 ~~L~tLll~~--n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~-I~~L----P~~l~~L  617 (889)
T KOG4658|consen  545 PKLRTLLLQR--NSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG-ISHL----PSGLGNL  617 (889)
T ss_pred             CccceEEEee--cchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC-cccc----chHHHHH
Confidence            3455555555  22  33333 34566666666666665 445666666666666666666654 5544    4445666


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDC  153 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~  153 (188)
                      ..|.+|++..+.-...     ..+++|++|.+...
T Consensus       618 k~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  618 KKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             HhhheeccccccccccccchhhhcccccEEEeecc
Confidence            6666666665542111     34666666666544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=5.8e-06  Score=66.96  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=21.2

Q ss_pred             CCCCcccEEEccCCccccc-----------CCCCCCCEeccCCCCCCC
Q 047302          121 GKVDSLEELDISGTAIRQL-----------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       121 ~~l~~L~~L~l~~~~i~~~-----------~~l~~L~~L~l~~~~l~~  157 (188)
                      +.++.|..|+++.|++.++           ..+++|+.|++..|++.+
T Consensus       268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~  315 (505)
T KOG3207|consen  268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD  315 (505)
T ss_pred             ccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccc
Confidence            4555566666666655554           345556666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.80  E-value=7.4e-07  Score=76.26  Aligned_cols=101  Identities=21%  Similarity=0.209  Sum_probs=72.6

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE  128 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~  128 (188)
                      .|...++++  |.+..+...+.-++.++.|+++.|++.... .+..+++|++||++.|. +..+|.-.   ...+. |..
T Consensus       165 ~L~~a~fsy--N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~---~~gc~-L~~  236 (1096)
T KOG1859|consen  165 KLATASFSY--NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLS---MVGCK-LQL  236 (1096)
T ss_pred             hHhhhhcch--hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccc---hhhhh-hee
Confidence            455556665  677777777777778888888888887666 67888888888888886 76665322   12233 788


Q ss_pred             EEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          129 LDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       129 L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      |++++|.++.+   .++.+|+.||+++|-+..
T Consensus       237 L~lrnN~l~tL~gie~LksL~~LDlsyNll~~  268 (1096)
T KOG1859|consen  237 LNLRNNALTTLRGIENLKSLYGLDLSYNLLSE  268 (1096)
T ss_pred             eeecccHHHhhhhHHhhhhhhccchhHhhhhc
Confidence            88888877766   677788888888885553

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.80  E-value=2.2e-06  Score=73.43  Aligned_cols=102  Identities=20%  Similarity=0.185  Sum_probs=74.8

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL  126 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L  126 (188)
                      ++.++.|+++.  |++.... .+..+++|++|||+.|.+..+|..-..-.+|+.|.+++|. ++++     .++.++.+|
T Consensus       186 l~ale~LnLsh--Nk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL-----~gie~LksL  256 (1096)
T KOG1859|consen  186 LPALESLNLSH--NKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTL-----RGIENLKSL  256 (1096)
T ss_pred             HHHhhhhccch--hhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccH-HHhh-----hhHHhhhhh
Confidence            46778888888  6776665 5577888888888888888887543333458888888885 6655     455777888


Q ss_pred             cEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          127 EELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       127 ~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      ..||++.|-+.+.      ..+..|..|.|.+|.+--
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            8888888876554      666778888888887653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.79  E-value=1.3e-05  Score=63.21  Aligned_cols=109  Identities=21%  Similarity=0.257  Sum_probs=80.7

Q ss_pred             ccceecEEEEccccccccc-----ccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCCCCCcc-CCC
Q 047302           46 YGTSVGTSIVGNCYKRIAN-----LERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDWQNLEC-LPS  114 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~-l~~  114 (188)
                      .-+.|+++..+.  |.+..     +...+...+.++.+.+..|.|.     .+-..+..+++|++|++.+|. ++. ...
T Consensus       155 ~~~~Lrv~i~~r--Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~  231 (382)
T KOG1909|consen  155 SKPKLRVFICGR--NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSV  231 (382)
T ss_pred             CCcceEEEEeec--cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHH
Confidence            457899999888  56533     4456677788999999888873     234567889999999999987 322 222


Q ss_pred             ccccccCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCCC
Q 047302          115 PISENLGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       115 ~~~~~l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~~  157 (188)
                      .+.+.+..|++|+.+++++|.++.-          ...++|+.+.+.+|.++.
T Consensus       232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITR  284 (382)
T ss_pred             HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHH
Confidence            2345567788899999999987665          557889999999998875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=1e-06  Score=68.25  Aligned_cols=106  Identities=21%  Similarity=0.190  Sum_probs=56.0

Q ss_pred             ceecEEEEccccccccc--ccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           48 TSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      +.|+.+|++.  ..++.  +-..+..+.+|+.|.+.|+++. .+-..+.+-.+|+.++++++.++++....  -.+..+.
T Consensus       185 sRlq~lDLS~--s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--ll~~scs  260 (419)
T KOG2120|consen  185 SRLQHLDLSN--SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--LLLSSCS  260 (419)
T ss_pred             hhhHHhhcch--hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH--HHHHhhh
Confidence            3577777776  44422  2334455566666666666664 33444555555666665555544332111  0123334


Q ss_pred             cccEEEccCCcccc------------------------------c----CCCCCCCEeccCCCCCCC
Q 047302          125 SLEELDISGTAIRQ------------------------------L----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       125 ~L~~L~l~~~~i~~------------------------------~----~~l~~L~~L~l~~~~l~~  157 (188)
                      .|..|+++.|....                              +    .++++|..||+++|..-.
T Consensus       261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~  327 (419)
T KOG2120|consen  261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLK  327 (419)
T ss_pred             hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccC
Confidence            44444444442211                              1    688889999999886554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.66  E-value=1.9e-05  Score=64.05  Aligned_cols=108  Identities=19%  Similarity=0.139  Sum_probs=74.0

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccc--hhhhcCCCCcEEEccCCCCCccCCCccccc----
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP--LSVEYLTGLFVLNFKDWQNLECLPSPISEN----  119 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~----  119 (188)
                      .+++|..|++..+ +.+........-+..|+.|+|++|++...+  .-.+.++.|..|+++.+. +.++.  .|+.    
T Consensus       220 ~fPsl~~L~L~~N-~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~--~~d~~s~~  295 (505)
T KOG3207|consen  220 TFPSLEVLYLEAN-EIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIA--EPDVESLD  295 (505)
T ss_pred             hCCcHHHhhhhcc-cccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhc--CCCccchh
Confidence            4678888888774 333222222244568899999999887666  357888999999998876 54432  1222    


Q ss_pred             -cCCCCcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          120 -LGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       120 -l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                       ...+++|++|++..|+|+++      ..+++|+.|.+-.|.+..
T Consensus       296 kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  296 KTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence             45678999999999999887      455566666666666553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=5.9e-05  Score=61.57  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCc-cCcccc
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIRELP   89 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~~lp   89 (188)
                      +|+.|.+++| +.+..+|..+  ..+|++|.+++| .+..+|
T Consensus        73 sLtsL~Lsnc-~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP  111 (426)
T PRK15386         73 ELTEITIENC-NNLTTLPGSI--PEGLEKLTVCHCPEISGLP  111 (426)
T ss_pred             CCcEEEccCC-CCcccCCchh--hhhhhheEccCcccccccc
Confidence            4555555555 5555555432  235556666555 444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.42  E-value=4.4e-05  Score=53.02  Aligned_cols=106  Identities=15%  Similarity=0.208  Sum_probs=77.7

Q ss_pred             eecEEEEccccccccccc---ccccCCCCccEEeecCccCcccchhhhcC-CCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           49 SVGTSIVGNCYKRIANLE---RFWGSMKSLTMLILDGTAIRELPLSVEYL-TGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~---~~~~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      -+..++++.|  .+-.++   ..+..-.+|+..++++|.++..|+.+... +..+.++++.|. +..+    |+.+..++
T Consensus        28 E~h~ldLssc--~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdv----PeE~Aam~  100 (177)
T KOG4579|consen   28 ELHFLDLSSC--QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDV----PEELAAMP  100 (177)
T ss_pred             Hhhhcccccc--hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhc----hHHHhhhH
Confidence            3456688886  443333   34455667888899999999888876544 588999999987 6666    55568889


Q ss_pred             cccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChh
Q 047302          125 SLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRD  165 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~  165 (188)
                      .|+.++++.|.+...    ..+.+|..|+...|...+    +|-.
T Consensus       101 aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~e----id~d  141 (177)
T KOG4579|consen  101 ALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAE----IDVD  141 (177)
T ss_pred             HhhhcccccCccccchHHHHHHHhHHHhcCCCCcccc----CcHH
Confidence            999999999987665    347777888888887665    6654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.19  E-value=0.00028  Score=61.65  Aligned_cols=103  Identities=14%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             ceecEEEEccccccc-ccccccc-cCCCCccEEeecCccCc--ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           48 TSVGTSIVGNCYKRI-ANLERFW-GSMKSLTMLILDGTAIR--ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i-~~l~~~~-~~l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+|+.|++++- ..+ ...|..+ ..++.|++|.+.+-.+.  +.-.-..++++|..||++++. +..+     .+++.+
T Consensus       122 ~nL~~LdI~G~-~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-----~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGS-ELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-----SGISRL  194 (699)
T ss_pred             HhhhhcCcccc-chhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-----HHHhcc
Confidence            56778888773 222 3333322 45688888888886653  334445678888888888876 4443     456777


Q ss_pred             CcccEEEccCCcccc------cCCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQ------LSRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~------~~~l~~L~~L~l~~~~l~~  157 (188)
                      .+|+.|.+.+-.+..      +..|++|+.||+|......
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccccccc
Confidence            888777776665543      2788899999999876554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.18  E-value=0.00015  Score=57.33  Aligned_cols=107  Identities=20%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             cceecEEEEccccccc-----ccccccccCCCCccEEeecCccCccc--------------chhhhcCCCCcEEEccCCC
Q 047302           47 GTSVGTSIVGNCYKRI-----ANLERFWGSMKSLTMLILDGTAIREL--------------PLSVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i-----~~l~~~~~~l~~L~~L~l~~~~i~~l--------------p~~~~~l~~L~~L~l~~~~  107 (188)
                      ++.|+++++|+  |.+     +.+.+.+.++..|++|++.+|.+...              ..-...-+.|+++....|+
T Consensus        91 ~~~L~~ldLSD--NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr  168 (382)
T KOG1909|consen   91 CPKLQKLDLSD--NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR  168 (382)
T ss_pred             CCceeEeeccc--cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence            45777788777  444     22334556677777777777776311              1112344566777666665


Q ss_pred             CCccCCCc-cccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCC
Q 047302          108 NLECLPSP-ISENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       108 ~l~~l~~~-~~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~  156 (188)
                       +...+.. +...+...+.|..+.+..|.|...         .++++|+.||+++|.++
T Consensus       169 -len~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  169 -LENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             -cccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence             3332211 112233334444444444444332         34555555555555444

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.15  E-value=1.4e-05  Score=61.56  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=24.4

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCC
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDW  106 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~  106 (188)
                      +.+++.|++.+|  .+..+... .+|+.|++|.|+-|.|..+. .+..++.|+.|++..|
T Consensus        18 l~~vkKLNcwg~--~L~DIsic-~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN   73 (388)
T KOG2123|consen   18 LENVKKLNCWGC--GLDDISIC-EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKN   73 (388)
T ss_pred             HHHhhhhcccCC--CccHHHHH-HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhc
Confidence            344444444443  33333322 34444444444444444443 2444444444444444

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.07  E-value=0.0015  Score=53.53  Aligned_cols=91  Identities=23%  Similarity=0.403  Sum_probs=61.2

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCc-cCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+..++.|++++|  .+..+|..   ..+|+.|.+.++ .++.+|..+.  .+|+.|.+++|..+..+|          .
T Consensus        50 ~~~~l~~L~Is~c--~L~sLP~L---P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP----------~  112 (426)
T PRK15386         50 EARASGRLYIKDC--DIESLPVL---PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP----------E  112 (426)
T ss_pred             HhcCCCEEEeCCC--CCcccCCC---CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc----------c
Confidence            4678888999985  67777732   346888888875 5666675442  578888888885455442          3


Q ss_pred             cccEEEccCCcccccCCCC-CCCEeccCCC
Q 047302          125 SLEELDISGTAIRQLSRLC-SLTKWDLSDC  153 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~~~l~-~L~~L~l~~~  153 (188)
                      +|+.|++.++....+..+| +|+.|.+.++
T Consensus       113 sLe~L~L~~n~~~~L~~LPssLk~L~I~~~  142 (426)
T PRK15386        113 SVRSLEIKGSATDSIKNVPNGLTSLSINSY  142 (426)
T ss_pred             ccceEEeCCCCCcccccCcchHhheecccc
Confidence            4666667766665565665 5788877543

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.98  E-value=0.00039  Score=52.96  Aligned_cols=77  Identities=25%  Similarity=0.282  Sum_probs=36.1

Q ss_pred             CCCccEEeecCc--cCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--------C
Q 047302           72 MKSLTMLILDGT--AIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--------S  140 (188)
Q Consensus        72 l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--------~  140 (188)
                      +++|+.|.++.|  ++. .++.....+++|+++++++|+ ++- ..++ ..+..+.+|..|++.+|....+        .
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~  140 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFL  140 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-cccc-chhhhhcchhhhhcccCCccccccHHHHHHH
Confidence            445555555555  333 344344444555555555554 221 1111 2234445555555555554444        3


Q ss_pred             CCCCCCEeccC
Q 047302          141 RLCSLTKWDLS  151 (188)
Q Consensus       141 ~l~~L~~L~l~  151 (188)
                      .+++|..||-.
T Consensus       141 ll~~L~~LD~~  151 (260)
T KOG2739|consen  141 LLPSLKYLDGC  151 (260)
T ss_pred             Hhhhhcccccc
Confidence            44555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.95  E-value=0.00049  Score=52.44  Aligned_cols=90  Identities=22%  Similarity=0.288  Sum_probs=63.2

Q ss_pred             ccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----
Q 047302           65 LERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----  139 (188)
Q Consensus        65 l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----  139 (188)
                      +......+..++.+.+.+..+..+. .+..+++|+.|.++.|. . .....++.....+++|+++++++|.|+.+     
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~-~-~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNY-R-RVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCc-c-cccccceehhhhCCceeEEeecCCccccccccch
Confidence            3334455667777777777765443 45568899999999984 1 11222222335569999999999998876     


Q ss_pred             -CCCCCCCEeccCCCCCCC
Q 047302          140 -SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       140 -~~l~~L~~L~l~~~~l~~  157 (188)
                       ..+.+|..|++..|..+.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTN  130 (260)
T ss_pred             hhhhcchhhhhcccCCccc
Confidence             677889999999997664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.91  E-value=0.00084  Score=51.89  Aligned_cols=109  Identities=18%  Similarity=0.160  Sum_probs=72.0

Q ss_pred             ccceecEEEEccccccc-cc----ccccccCCCCccEEeecCccCcccc--------------hhhhcCCCCcEEEccCC
Q 047302           46 YGTSVGTSIVGNCYKRI-AN----LERFWGSMKSLTMLILDGTAIRELP--------------LSVEYLTGLFVLNFKDW  106 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i-~~----l~~~~~~l~~L~~L~l~~~~i~~lp--------------~~~~~l~~L~~L~l~~~  106 (188)
                      .|++++..++|+  |.+ ..    +.+.+.+-..+.+|.+++|.+..+.              ....+-+.|++.....|
T Consensus        90 kcp~l~~v~LSD--NAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          90 KCPRLQKVDLSD--NAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             cCCcceeeeccc--cccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            578899999988  555 22    2345577788999999988874321              11235678888888888


Q ss_pred             CCCccCCCcc-ccccCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCCC
Q 047302          107 QNLECLPSPI-SENLGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       107 ~~l~~l~~~~-~~~l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~~  157 (188)
                      + +...+... ...+..-..|+.+.+..|.|+.-          .++.+|+.||+++|.++.
T Consensus       168 R-lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~  228 (388)
T COG5238         168 R-LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTL  228 (388)
T ss_pred             h-hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhh
Confidence            6 65554322 12233335777777877777654          577788888888887663

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.00012  Score=57.19  Aligned_cols=108  Identities=19%  Similarity=0.180  Sum_probs=63.0

Q ss_pred             ccceecEEEEccccccccccc--ccccCCCCccEEeecCccCc-ccch-hhhc-CCCCcEEEccCCCCCccCCC-ccccc
Q 047302           46 YGTSVGTSIVGNCYKRIANLE--RFWGSMKSLTMLILDGTAIR-ELPL-SVEY-LTGLFVLNFKDWQNLECLPS-PISEN  119 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~--~~~~~l~~L~~L~l~~~~i~-~lp~-~~~~-l~~L~~L~l~~~~~l~~l~~-~~~~~  119 (188)
                      .-.+|+.++++.| +++.+..  -.+.+++.|..|+++++... +.-. .+.+ -.+|+.|+++|+.  +.+.. .+..-
T Consensus       232 kN~~L~~lnlsm~-sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r--rnl~~sh~~tL  308 (419)
T KOG2120|consen  232 KNSNLVRLNLSMC-SGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR--RNLQKSHLSTL  308 (419)
T ss_pred             ccccceeeccccc-cccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH--hhhhhhHHHHH
Confidence            3457788888888 7776543  34577778888888888653 2211 1222 2566777777764  11111 11111


Q ss_pred             cCCCCcccEEEccCCc-cccc-----CCCCCCCEeccCCCCCC
Q 047302          120 LGKVDSLEELDISGTA-IRQL-----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       120 l~~l~~L~~L~l~~~~-i~~~-----~~l~~L~~L~l~~~~l~  156 (188)
                      ...++++..||+++|. ++.-     ..++.|++|.++.|...
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence            2456777777777763 2221     56677777777777543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=8.2e-05  Score=57.47  Aligned_cols=79  Identities=22%  Similarity=0.227  Sum_probs=66.5

Q ss_pred             CCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc------CCCCC
Q 047302           71 SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL------SRLCS  144 (188)
Q Consensus        71 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~------~~l~~  144 (188)
                      .+.+.+.|+..|+.+.++- ....|+.|++|.++-|. +..+     ..+..|++|++|++..|.|.++      .++++
T Consensus        17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL-----~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSL-----APLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccc-----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            3567889999999998775 46789999999999997 6655     4468899999999999999887      89999


Q ss_pred             CCEeccCCCCCC
Q 047302          145 LTKWDLSDCNLP  156 (188)
Q Consensus       145 L~~L~l~~~~l~  156 (188)
                      |++|.|..|.=.
T Consensus        90 Lr~LWL~ENPCc  101 (388)
T KOG2123|consen   90 LRTLWLDENPCC  101 (388)
T ss_pred             hhhHhhccCCcc
Confidence            999999888543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.34  E-value=0.002  Score=30.02  Aligned_cols=18  Identities=33%  Similarity=0.530  Sum_probs=9.8

Q ss_pred             ccEEeecCccCcccchhh
Q 047302           75 LTMLILDGTAIRELPLSV   92 (188)
Q Consensus        75 L~~L~l~~~~i~~lp~~~   92 (188)
                      |++|++++|+++.+|+.+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            455555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.29  E-value=0.00082  Score=52.54  Aligned_cols=49  Identities=29%  Similarity=0.398  Sum_probs=25.1

Q ss_pred             CcccEEEccCCccccc-------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          124 DSLEELDISGTAIRQL-------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +.++.+++.+|.|+++       .++|.|++|++++|++...|+.+|..+.+++.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            3444555555555554       455555555555555555555555444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.0092  Score=46.86  Aligned_cols=38  Identities=18%  Similarity=0.151  Sum_probs=21.6

Q ss_pred             ccceecEEEEccccccccccc---ccccCCCCccEEeecCccC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE---RFWGSMKSLTMLILDGTAI   85 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~---~~~~~l~~L~~L~l~~~~i   85 (188)
                      ..+.++.+|+.+  |.+..+.   ..+.+|+.++.|+++.|++
T Consensus        69 ~~~~v~elDL~~--N~iSdWseI~~ile~lP~l~~LNls~N~L  109 (418)
T KOG2982|consen   69 SVTDVKELDLTG--NLISDWSEIGAILEQLPALTTLNLSCNSL  109 (418)
T ss_pred             Hhhhhhhhhccc--chhccHHHHHHHHhcCccceEeeccCCcC
Confidence            345666666666  5554333   3445666666666666654

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.48  E-value=0.0028  Score=29.48  Aligned_cols=21  Identities=38%  Similarity=0.472  Sum_probs=14.8

Q ss_pred             CCCEeccCCCCCCCCCCCCChhhHH
Q 047302          144 SLTKWDLSDCNLPVEGGEIPRDICY  168 (188)
Q Consensus       144 ~L~~L~l~~~~l~~~~~~lp~~l~~  168 (188)
                      +|+.|++++|+++.    +|..+++
T Consensus         1 ~L~~Ldls~n~l~~----ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS----IPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESE----EGTTTTT
T ss_pred             CccEEECCCCcCEe----CChhhcC
Confidence            47788888887776    7766543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=95.39  E-value=0.057  Score=41.95  Aligned_cols=56  Identities=34%  Similarity=0.451  Sum_probs=44.2

Q ss_pred             hhHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc--cCcccceecEEEEcc
Q 047302            2 DSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD--HGTYGTSVGTSIVGN   57 (188)
Q Consensus         2 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~l~~L~~L~l~~   57 (188)
                      |.+++++.+.+.....+...+.++|++|+||++++..++..  ....+...-+++++.
T Consensus         2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~   59 (287)
T PF00931_consen    2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK   59 (287)
T ss_dssp             HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES
T ss_pred             HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc
Confidence            67899999888887689999999999999999999877655  333455555666655

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.96  E-value=0.014  Score=25.24  Aligned_cols=15  Identities=33%  Similarity=0.350  Sum_probs=8.0

Q ss_pred             CCCCEeccCCCCCCC
Q 047302          143 CSLTKWDLSDCNLPV  157 (188)
Q Consensus       143 ~~L~~L~l~~~~l~~  157 (188)
                      ++|+.|++++|++++
T Consensus         1 ~~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTS   15 (17)
T ss_dssp             TT-SEEEETSS--SS
T ss_pred             CccCEEECCCCCCCC
Confidence            356777777777665

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.69  E-value=0.067  Score=25.64  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=12.8

Q ss_pred             CCccEEeecCccCcccchh
Q 047302           73 KSLTMLILDGTAIRELPLS   91 (188)
Q Consensus        73 ~~L~~L~l~~~~i~~lp~~   91 (188)
                      .+|++|++++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4567777777777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.69  E-value=0.067  Score=25.64  Aligned_cols=19  Identities=26%  Similarity=0.352  Sum_probs=12.8

Q ss_pred             CCccEEeecCccCcccchh
Q 047302           73 KSLTMLILDGTAIRELPLS   91 (188)
Q Consensus        73 ~~L~~L~l~~~~i~~lp~~   91 (188)
                      .+|++|++++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4567777777777776654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.92  E-value=0.12  Score=24.78  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=16.6

Q ss_pred             CCCCCEeccCCCCCCCCCCCCChhh
Q 047302          142 LCSLTKWDLSDCNLPVEGGEIPRDI  166 (188)
Q Consensus       142 l~~L~~L~l~~~~l~~~~~~lp~~l  166 (188)
                      +++|++|++++|+++.    +|...
T Consensus         1 L~~L~~L~L~~N~l~~----lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSS----LPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCc----CCHHH
Confidence            4678899999998887    77653

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.92  E-value=0.12  Score=24.78  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=16.6

Q ss_pred             CCCCCEeccCCCCCCCCCCCCChhh
Q 047302          142 LCSLTKWDLSDCNLPVEGGEIPRDI  166 (188)
Q Consensus       142 l~~L~~L~l~~~~l~~~~~~lp~~l  166 (188)
                      +++|++|++++|+++.    +|...
T Consensus         1 L~~L~~L~L~~N~l~~----lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSS----LPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCc----CCHHH
Confidence            4678899999998887    77653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.29  E-value=0.051  Score=45.11  Aligned_cols=106  Identities=22%  Similarity=0.241  Sum_probs=63.3

Q ss_pred             cceecEEEEccccccccc--ccccccCCCCccEEeecCc--cCccc----chhhhcCCCCcEEEccCCCCCccCCCcccc
Q 047302           47 GTSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGT--AIREL----PLSVEYLTGLFVLNFKDWQNLECLPSPISE  118 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~--~i~~l----p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~  118 (188)
                      ++.|+.+.+..| ..+..  +......+++|+.|+++++  .+...    ......+.+|++++++++..+...  .+..
T Consensus       187 ~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~--~l~~  263 (482)
T KOG1947|consen  187 CPLLKRLSLSGC-SKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI--GLSA  263 (482)
T ss_pred             CchhhHhhhccc-ccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch--hHHH
Confidence            567777777777 66654  3344466778888888762  21111    123445677788887776532211  1111


Q ss_pred             ccCCCCcccEEEccCCc-cccc------CCCCCCCEeccCCCCC
Q 047302          119 NLGKVDSLEELDISGTA-IRQL------SRLCSLTKWDLSDCNL  155 (188)
Q Consensus       119 ~l~~l~~L~~L~l~~~~-i~~~------~~l~~L~~L~l~~~~l  155 (188)
                      ....+++|+.|.+.+|. +++.      ..+++|+.|+++.|..
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            11236778888777676 5554      6777788888887743

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.00  E-value=0.078  Score=43.46  Aligned_cols=125  Identities=16%  Similarity=0.153  Sum_probs=57.4

Q ss_pred             cccceecEEEEccccccccccc--ccccCCCCccEEeecCccCc---ccchhhhcCCCCcEEEccCCCCCccCC-Ccccc
Q 047302           45 TYGTSVGTSIVGNCYKRIANLE--RFWGSMKSLTMLILDGTAIR---ELPLSVEYLTGLFVLNFKDWQNLECLP-SPISE  118 (188)
Q Consensus        45 ~~l~~L~~L~l~~~~~~i~~l~--~~~~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~  118 (188)
                      .+..+|+.+.++.| ..+....  ..-.++++|+.+++.++...   ++-..-.+++.|+++.++-|..++.-. ..+..
T Consensus       317 ~~~~~L~~l~l~~c-~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~  395 (483)
T KOG4341|consen  317 QHCHNLQVLELSGC-QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS  395 (483)
T ss_pred             cCCCceEEEecccc-chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence            34556666666665 4332211  11134555666665555321   122223445666666655432111100 00001


Q ss_pred             ccCCCCcccEEEccCCccccc------CCCCCCCEeccCCCC-CCCCCCCCChhhHHHhhh
Q 047302          119 NLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCN-LPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       119 ~l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~-l~~~~~~lp~~l~~l~~L  172 (188)
                      .-..+..+..+.+.+++....      ..+++|+.+++.+|+ +++  ..+-....+++++
T Consensus       396 ~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk--~~i~~~~~~lp~i  454 (483)
T KOG4341|consen  396 SSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK--EAISRFATHLPNI  454 (483)
T ss_pred             ccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh--hhhHHHHhhCccc
Confidence            112345566677777764322      566678888887773 333  2233333444444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.74  E-value=1.3  Score=29.68  Aligned_cols=97  Identities=13%  Similarity=0.247  Sum_probs=50.8

Q ss_pred             cccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           45 TYGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        45 ~~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      +++++|+.+.+..   .++.++ ..+..+.+++.+.+..+ +..++. .+.++.+++.+.+.++  +..++.   ..+..
T Consensus         9 ~~~~~l~~i~~~~---~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~---~~F~~   79 (129)
T PF13306_consen    9 YNCSNLESITFPN---TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGD---NAFSN   79 (129)
T ss_dssp             TT-TT--EEEETS---T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-T---TTTTT
T ss_pred             hCCCCCCEEEECC---CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccc--cccccc---ccccc
Confidence            4677888888874   345555 34577778999988875 666654 4667778889988652  444432   23456


Q ss_pred             CCcccEEEccCCccccc-----CCCCCCCEeccCC
Q 047302          123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSD  152 (188)
Q Consensus       123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~  152 (188)
                      +++++.+.+..+ +..+     .+. .|+.+.+..
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            788888888654 4333     444 677776654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=91.57  E-value=0.33  Score=37.99  Aligned_cols=107  Identities=14%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             ccceecEEEEccccccc----ccc-------cccccCCCCccEEeecCccCc-ccchh----hhcCCCCcEEEccCCCCC
Q 047302           46 YGTSVGTSIVGNCYKRI----ANL-------ERFWGSMKSLTMLILDGTAIR-ELPLS----VEYLTGLFVLNFKDWQNL  109 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i----~~l-------~~~~~~l~~L~~L~l~~~~i~-~lp~~----~~~l~~L~~L~l~~~~~l  109 (188)
                      +-.+|+..++++  ...    .++       -+.+.+|++++..+++.|.+. ..|+.    +++-+.|.+|.+.+|. +
T Consensus        56 ~~~~L~vvnfsd--~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-l  132 (388)
T COG5238          56 NVRNLRVVNFSD--AFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-L  132 (388)
T ss_pred             hhcceeEeehhh--hhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-C
Confidence            345677776665  222    122       234467778888888888775 44433    5666778888887775 3


Q ss_pred             ccCCC-ccc---------cccCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCC
Q 047302          110 ECLPS-PIS---------ENLGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       110 ~~l~~-~~~---------~~l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~  156 (188)
                      ..+.. .+.         .....-+.|+......|++...          .+ ..|..+.+..|.+.
T Consensus       133 Gp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~~lk~vki~qNgIr  198 (388)
T COG5238         133 GPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-ENLKEVKIQQNGIR  198 (388)
T ss_pred             CccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-cCceeEEeeecCcC
Confidence            22211 110         1122345677777766665443          22 35777778788766

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.97  E-value=0.011  Score=44.81  Aligned_cols=85  Identities=14%  Similarity=0.043  Sum_probs=49.5

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+...+.+|++.  +.+..+...+.-+..+.+++++.|++..+|...+....+..+++.+|. +...    |.+.+..+.
T Consensus        40 ~~kr~tvld~~s--~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~----p~s~~k~~~  112 (326)
T KOG0473|consen   40 SFKRVTVLDLSS--NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQ----PKSQKKEPH  112 (326)
T ss_pred             ccceeeeehhhh--hHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhC----CccccccCC
Confidence            345556666665  455444444455555666666666666666666666666666665554 4444    333366666


Q ss_pred             ccEEEccCCccc
Q 047302          126 LEELDISGTAIR  137 (188)
Q Consensus       126 L~~L~l~~~~i~  137 (188)
                      ++.++..++.+.
T Consensus       113 ~k~~e~k~~~~~  124 (326)
T KOG0473|consen  113 PKKNEQKKTEFF  124 (326)
T ss_pred             cchhhhccCcch
Confidence            666666666543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.94  E-value=0.0079  Score=45.64  Aligned_cols=91  Identities=16%  Similarity=0.140  Sum_probs=72.5

Q ss_pred             cccccc-ccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc
Q 047302           61 RIANLE-RFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL  139 (188)
Q Consensus        61 ~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  139 (188)
                      ...++| ..+...+..+.||++.|++..+-..++.++.+..|+++.|+ +..+    |++++....++.+++..|..+..
T Consensus        29 ~~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq-~~~~----~~d~~q~~e~~~~~~~~n~~~~~  103 (326)
T KOG0473|consen   29 ELSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ-IKFL----PKDAKQQRETVNAASHKNNHSQQ  103 (326)
T ss_pred             HhcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhh-HhhC----hhhHHHHHHHHHHHhhccchhhC
Confidence            344455 23467889999999999998888889999999999999997 6666    55568888888888888877665


Q ss_pred             ----CCCCCCCEeccCCCCCC
Q 047302          140 ----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       140 ----~~l~~L~~L~l~~~~l~  156 (188)
                          +..+.++.++.-.+.+.
T Consensus       104 p~s~~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  104 PKSQKKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             CccccccCCcchhhhccCcch
Confidence                77788888888888765

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.36  E-value=0.1  Score=38.71  Aligned_cols=77  Identities=23%  Similarity=0.286  Sum_probs=44.9

Q ss_pred             CccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccC-CCCcccEEEccCCc-cccc-----CCCCCC
Q 047302           74 SLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLG-KVDSLEELDISGTA-IRQL-----SRLCSL  145 (188)
Q Consensus        74 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~-~l~~L~~L~l~~~~-i~~~-----~~l~~L  145 (188)
                      .++.++.+++.|. +--..+.+++.++.+.+.+|..+..+  .+ +.++ -.++|+.|++++|. |++.     ..+++|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~--~L-~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL  178 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDW--CL-ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL  178 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhH--HH-HHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence            3666677777664 22334666777777777776532211  11 1222 23677788888773 6654     566777


Q ss_pred             CEeccCCC
Q 047302          146 TKWDLSDC  153 (188)
Q Consensus       146 ~~L~l~~~  153 (188)
                      +.|.+.+-
T Consensus       179 r~L~l~~l  186 (221)
T KOG3864|consen  179 RRLHLYDL  186 (221)
T ss_pred             HHHHhcCc
Confidence            77766544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.47  E-value=0.13  Score=38.13  Aligned_cols=82  Identities=24%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccccc--ccccccCCCCccEEeecCc-cCccc-chhhhcC
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGT-AIREL-PLSVEYL   95 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~-~i~~l-p~~~~~l   95 (188)
                      ..+..++.+++   .+...-+... .+++.++.+.+.+| ..+..  +...-.-.++|+.|++++| +|++- -..+..+
T Consensus       101 ~~IeaVDAsds---~I~~eGle~L-~~l~~i~~l~l~~c-k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l  175 (221)
T KOG3864|consen  101 VKIEAVDASDS---SIMYEGLEHL-RDLRSIKSLSLANC-KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL  175 (221)
T ss_pred             ceEEEEecCCc---hHHHHHHHHH-hccchhhhheeccc-cchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh
Confidence            45566666642   2222222222 26788888899988 66533  2221134578999999988 77633 3467888


Q ss_pred             CCCcEEEccCC
Q 047302           96 TGLFVLNFKDW  106 (188)
Q Consensus        96 ~~L~~L~l~~~  106 (188)
                      ++|+.|.+.+-
T Consensus       176 knLr~L~l~~l  186 (221)
T KOG3864|consen  176 KNLRRLHLYDL  186 (221)
T ss_pred             hhhHHHHhcCc
Confidence            88888887664

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.35  E-value=0.88  Score=21.11  Aligned_cols=14  Identities=29%  Similarity=0.382  Sum_probs=6.7

Q ss_pred             CCCCEeccCCCCCC
Q 047302          143 CSLTKWDLSDCNLP  156 (188)
Q Consensus       143 ~~L~~L~l~~~~l~  156 (188)
                      ++|++|++++|.+.
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            45556666665544

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=81.68  E-value=1  Score=21.75  Aligned_cols=18  Identities=28%  Similarity=0.462  Sum_probs=14.3

Q ss_pred             CCCCEeccCCCCCCCCCCCCCh
Q 047302          143 CSLTKWDLSDCNLPVEGGEIPR  164 (188)
Q Consensus       143 ~~L~~L~l~~~~l~~~~~~lp~  164 (188)
                      ++|+.|++++|++++    +|.
T Consensus         2 ~~L~~L~vs~N~Lt~----LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTS----LPE   19 (26)
T ss_pred             cccceeecCCCcccc----Ccc
Confidence            468888888888887    775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	188
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-10
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 2e-11
 Identities = 40/220 (18%), Positives = 66/220 (30%), Gaps = 49/220 (22%)

Query: 3   SHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSI----VGNC 58
             L +L        N    + I  + G GK  +A  V   +          I    + NC
Sbjct: 142 QALLEL----RPAKN----VLIDGVLGSGKTWVALDVCLSYKVQCKMDF-KIFWLNLKNC 192

Query: 59  YK---RIANLERFWGSMKSLTMLILDGT------------AIRELPLSVEYLTGLFVL-- 101
                 +  L++    +        D +             +R L  S  Y   L VL  
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252

Query: 102 --NFKDWQ--NLEC----------LPSPISENLGKVDSLEELDISGTAIRQLSRLCSLTK 147
             N K W   NL C          +   +S       SL+   ++ T   ++  L    K
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLL--K 309

Query: 148 W-DLSDCNLPVEGGEI-PRDICYLCLLFKDEPESNSQIRR 185
           + D    +LP E     PR +  +    +D   +    + 
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 60.3 bits (147), Expect = 2e-11
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 13/112 (11%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI-----SENLGKVD 124
                L  L L    +R LP S+  L  L  L+ +    L  LP P+     S     + 
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 125 SLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172
           +L+ L +  T IR L    + L +L    + +  L      +   I +L  L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL----SALGPAIHHLPKL 231

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 23/125 (18%), Positives = 44/125 (35%), Gaps = 17/125 (13%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129
            ++++L  L +  + +  L  ++ +L  L  L+ +    L   P       G    L+ L
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP----PIFGGRAPLKRL 258

Query: 130 DISG-TAIRQL----SRLCSLTKWDLSDCN----LPVEGGEIPRDICYLCLLFKDEPESN 180
            +   + +  L     RL  L K DL  C     LP    ++P      C++        
Sbjct: 259 ILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA----NCIILVPPHLQA 314

Query: 181 SQIRR 185
              + 
Sbjct: 315 QLDQH 319

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 22/114 (19%), Positives = 37/114 (32%), Gaps = 23/114 (20%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129
             +  L  + +D   + ELP +++   GL  L       L  LP     ++  ++ L EL
Sbjct: 101 FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL-ARNPLRALP----ASIASLNRLREL 155

Query: 130 DISG--------------TAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYL 169
            I                 A  +   L +L    L    +      +P  I  L
Sbjct: 156 SIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR----SLPASIANL 205

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 46.9 bits (112), Expect = 9e-07
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 71  SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD 130
           +      L L    + + P     L+ L  +   D   L  LP    + + +   LE L 
Sbjct: 79  TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTI-DAAGLMELP----DTMQQFAGLETLT 133

Query: 131 ISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172
           ++   +R L    + L  L +  +  C       E+P  +      
Sbjct: 134 LARNPLRALPASIASLNRLRELSIRACPELT---ELPEPLASTDAS 176

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 45.3 bits (107), Expect = 4e-06
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 71  SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD 130
               L  L +    +  LP     L  L+  N      L  LP+  S        L+EL 
Sbjct: 179 LPSGLQELSVSDNQLASLPTLPSELYKLWAYN----NRLTSLPALPS-------GLKELI 227

Query: 131 ISGTAIRQL-SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172
           +SG  +  L      L +  +S   L      +P     L  L
Sbjct: 228 VSGNRLTSLPVLPSELKELMVSGNRL----TSLPMLPSGLLSL 266

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 16/110 (14%)

Query: 64  NLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123
           NL         L  L + G  +  LP+    L  L + +     +L  LPS         
Sbjct: 72  NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNP-LTHLPALPS--------- 121

Query: 124 DSLEELDISGTAIRQLSR-LCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172
             L +L I G  +  L      L +  +SD  L      +P     LC L
Sbjct: 122 -GLCKLWIFGNQLTSLPVLPPGLQELSVSDNQL----ASLPALPSELCKL 166

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 14/94 (14%)

Query: 64  NLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQN-LECLPSPISENLGK 122
            L         L  L +    +  LP     L  L+  N     N L  LP   S     
Sbjct: 132 QLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN-----NQLTSLPMLPS----- 181

Query: 123 VDSLEELDISGTAIRQL-SRLCSLTKWDLSDCNL 155
              L+EL +S   +  L +    L K    +  L
Sbjct: 182 --GLQELSVSDNQLASLPTLPSELYKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 38.3 bits (89), Expect = 8e-04
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 15/120 (12%)

Query: 71  SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQN-LECLPSPISENLGKVDSLEEL 129
               L  L++ G  +  LP+    L  L V       N L  LP    E+L  + S   +
Sbjct: 239 LPSELKELMVSGNRLTSLPMLPSGLLSLSVYR-----NQLTRLP----ESLIHLSSETTV 289

Query: 130 DISGTAIRQLS-----RLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPESNSQIR 184
           ++ G  + + +      + S   +        + G   PR+   L L   D      +  
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGE 349

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 22/122 (18%), Positives = 31/122 (25%), Gaps = 12/122 (9%)

Query: 71  SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD 130
              SL +L +    +  LP   E L  L V        LE LP+    N    ++     
Sbjct: 158 LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNL----LESLPAVPVRNHHSEETEIFFR 213

Query: 131 ISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPESNSQIRRN 186
                I  +      L       L D  L        R+         D          +
Sbjct: 214 CRENRITHIPENILSLDPTCTIILEDNPLS----SRIRESLSQQTAQPDYHGPRIYFSMS 269

Query: 187 VG 188
            G
Sbjct: 270 DG 271

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 41.9 bits (98), Expect = 5e-05
 Identities = 26/127 (20%), Positives = 37/127 (29%), Gaps = 21/127 (16%)

Query: 64  NLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQN-LECLPSPISENLGK 122
            L        SL  L +D   +  LP     L  +   N     N L  LP   +     
Sbjct: 111 RLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADN-----NQLTMLPELPT----- 160

Query: 123 VDSLEELDISGTAIRQL-SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDEPE--- 178
             SLE L +    +  L     SL   D+S   L      +P          + E     
Sbjct: 161 --SLEVLSVRNNQLTFLPELPESLEALDVSTNLL----ESLPAVPVRNHHSEETEIFFRC 214

Query: 179 SNSQIRR 185
             ++I  
Sbjct: 215 RENRITH 221

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 25/86 (29%), Gaps = 12/86 (13%)

Query: 71  SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD 130
              SL  L      +  LP     L  L V N      L  LP   +        LE ++
Sbjct: 98  LPASLEYLDACDNRLSTLPELPASLKHLDVDN----NQLTMLPELPA-------LLEYIN 146

Query: 131 ISGTAIRQL-SRLCSLTKWDLSDCNL 155
                +  L     SL    + +  L
Sbjct: 147 ADNNQLTMLPELPTSLEVLSVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 23/107 (21%)

Query: 71  SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD 130
               L  +  D   +  LP     L  L V N +    L  LP           SLE LD
Sbjct: 138 LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQ----LTFLPELPE-------SLEALD 186

Query: 131 ISGTAIRQL----SRLCSLTKW----DLSDCNLPVEGGEIPRDICYL 169
           +S   +  L     R     +        +  +      IP +I  L
Sbjct: 187 VSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT----HIPENILSL 229

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 16/101 (15%)

Query: 73  KSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDIS 132
             +T+L +   A+  LP     L  L   +      L  LP   +       SL+ LD+ 
Sbjct: 80  PQITVLEITQNALISLPELPASLEYLDACD----NRLSTLPELPA-------SLKHLDVD 128

Query: 133 GTAIRQL-SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172
              +  L      L   +  +  L      +P     L +L
Sbjct: 129 NNQLTMLPELPALLEYINADNNQL----TMLPELPTSLEVL 165

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 38.8 bits (90), Expect = 6e-04
 Identities = 15/127 (11%), Positives = 34/127 (26%), Gaps = 15/127 (11%)

Query: 71  SMKSLTMLILDGTAIRELPLSVEYLTGL----FVLNFKDWQNLECLPSPISENLGKVDSL 126
             +SL  L +    +  LP                  ++ + +  +P    EN+  +D  
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR-ITHIP----ENILSLDPT 232

Query: 127 EELDISG-----TAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLLFKDE-PESN 180
             + +            LS+  +   +        +  G+       L        PE+ 
Sbjct: 233 CTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292

Query: 181 SQIRRNV 187
                 +
Sbjct: 293 QSDVSQI 299

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 22/130 (16%), Positives = 40/130 (30%), Gaps = 16/130 (12%)

Query: 54  IVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSV-EYLTGLFVLNFKDWQNLECL 112
           I     K    L+       +++ + L    I + P  +    + L  +N      L  +
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG-NMLTEI 472

Query: 113 P----SPISENLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEI 162
           P       +EN      L  +D+    + +L      + L  L   DLS  +      + 
Sbjct: 473 PKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF----SKF 528

Query: 163 PRDICYLCLL 172
           P        L
Sbjct: 529 PTQPLNSSTL 538

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 4/94 (4%)

Query: 66  ERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLEC--LPSPISENLGKV 123
           +    ++  L  + L   +  + P      + L     ++ ++ +         E +   
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 124 DSLEELDISGTAIRQLSR--LCSLTKWDLSDCNL 155
            SL +L I    IR+++     +++  D+ D   
Sbjct: 566 PSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPN 599

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 14/100 (14%), Positives = 29/100 (29%), Gaps = 7/100 (7%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129
                 T +      I  +  +V  LT L         +     +       + ++ E  
Sbjct: 180 RITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYM--GNSP--FVAENICEAWENENSEYA 235

Query: 130 DISGTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYL 169
               T   +   L  LT  ++ +C       ++P  +  L
Sbjct: 236 QQYKTEDLKWDNLKDLTDVEVYNCPN---LTKLPTFLKAL 272

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 15/114 (13%), Positives = 28/114 (24%), Gaps = 16/114 (14%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQN-LECLPSPISENLGKVDSLEE 128
             MK L ML      +     +      L  LN     N +  +P+           +E 
Sbjct: 327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNL--AYNQITEIPANFCGFTE---QVEN 381

Query: 129 LDISG---TAI---RQLSRLCSLTKWDLSDCNL----PVEGGEIPRDICYLCLL 172
           L  +      I        +  ++  D S   +          +         +
Sbjct: 382 LSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 38.5 bits (90), Expect = 7e-04
 Identities = 12/113 (10%), Positives = 31/113 (27%), Gaps = 23/113 (20%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129
              ++        T      L  + L  L  +   +  NL  LP      L  +  ++ +
Sbjct: 227 WENENSEYAQQYKT----EDLKWDNLKDLTDVEVYNCPNLTKLP----TFLKALPEMQLI 278

Query: 130 DIS-------------GTAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYL 169
           +++               A+        +    +   NL  +   +   +  +
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL--KTFPVETSLQKM 329

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 41.5 bits (98), Expect = 5e-05
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 60  KRIANLERFWGSMKSLTMLILDGTAIRELPLSV-EYLTGLFVLNFKDWQNLECLPSPISE 118
           K+++    F   +++L  L +  T  R     +   L+ L VL        E     I  
Sbjct: 114 KQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 172

Query: 119 NLGKVDSLEELDISGTAIRQLSR-----LCSLTKWDLSDCNL 155
            L     L  LD+S   + QLS      L SL   ++S  N 
Sbjct: 173 ELRN---LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 6e-05
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 24/122 (19%)

Query: 53  SIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNF-----KDWQ 107
               +  K +  ++     + ++T L L+G  + ++   +  L  L  L       KD  
Sbjct: 49  IANNSDIKSVQGIQ----YLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDLS 103

Query: 108 NLECLPS---------PIS--ENLGKVDSLEELDISG---TAIRQLSRLCSLTKWDLSDC 153
           +L+ L            IS    L  +  LE L +     T I  LSRL  L    L D 
Sbjct: 104 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDN 163

Query: 154 NL 155
            +
Sbjct: 164 QI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 41.6 bits (97), Expect = 7e-05
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 24/139 (17%)

Query: 53  SIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNF-----KDWQ 107
            +  N  K +++L+     +K L  L L+   I ++   + +L  L  L        D  
Sbjct: 93  FLDENKIKDLSSLK----DLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT 147

Query: 108 NLECLPS---------PIS--ENLGKVDSLEELDISG---TAIRQLSRLCSLTKWDLSDC 153
            L  L            IS    L  +  L+ L +S    + +R L+ L +L   +L   
Sbjct: 148 VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 207

Query: 154 NLPVEGGEIPRDICYLCLL 172
               +      ++     +
Sbjct: 208 ECLNKPINHQSNLVVPNTV 226

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 24/110 (21%), Positives = 40/110 (36%), Gaps = 14/110 (12%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLN---------FKDWQNLECLPSPISENL 120
            ++  LT +  D   ++ LP     L  L V +          +    L+   +  S   
Sbjct: 234 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 293

Query: 121 GKVDSLEELDISGTAIRQLSRLC-SLTKWDLSDCNLPVEGGEIPRDICYL 169
               +L  L+ S   IR L  L  SL + ++S+  L     E+P     L
Sbjct: 294 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL----IELPALPPRL 339

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 10/87 (11%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129
            +   L ++ +D  ++++LP     L  +   N      LE LP      L  +  L  +
Sbjct: 150 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN----NQLEELP-----ELQNLPFLTAI 200

Query: 130 DISGTAIRQL-SRLCSLTKWDLSDCNL 155
                ++++L     SL      +  L
Sbjct: 201 YADNNSLKKLPDLPLSLESIVAGNNIL 227

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 14/98 (14%)

Query: 71  SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSP-----ISEN------ 119
               L  L+    ++ ELP   + L  L V N    + L  LP       +S N      
Sbjct: 89  LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL-KALSDLPPLLEYLGVSNNQLEKLP 147

Query: 120 -LGKVDSLEELDISGTAIRQL-SRLCSLTKWDLSDCNL 155
            L     L+ +D+   ++++L     SL      +  L
Sbjct: 148 ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 185

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 21/112 (18%), Positives = 41/112 (36%), Gaps = 16/112 (14%)

Query: 64  NLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV 123
           NL+        L  L +    + +LP  ++  + L +++  D  +L+ LP          
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV-DNNSLKKLPDLPP------ 173

Query: 124 DSLEELDISG---TAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL 172
            SLE +         + +L  L  LT     + +L     ++P     L  +
Sbjct: 174 -SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK----KLPDLPLSLESI 220

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 11/104 (10%)

Query: 61  RIANLERFW-GSMKSLTMLILDGTAIRELPLSVEY--LTGLFVLNFKDWQNLECLPSPIS 117
            +++L   W G + SL  L L G   + L ++  +  LT L  L   + +    +     
Sbjct: 85  HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144

Query: 118 ENLGKVDSLEELDISGTAIRQLS-----RLCSLTKWDLSDCNLP 156
             L    SL EL+I   ++R         +  +    L      
Sbjct: 145 AGLT---SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 23/96 (23%), Positives = 40/96 (41%), Gaps = 16/96 (16%)

Query: 68  FWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLP------SPISENLG 121
             G+  SL  L+L    +R +  + E L  L        +NL  L        P+ ++  
Sbjct: 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTL--------KNLTSLDISRNTFHPMPDSCQ 407

Query: 122 KVDSLEELDISGTAIRQLSR--LCSLTKWDLSDCNL 155
             + +  L++S T IR +      +L   D+S+ NL
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 25/103 (24%), Positives = 36/103 (34%), Gaps = 11/103 (10%)

Query: 61  RIANLERFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISEN 119
            ++ L      + +L  L+L       L  +S      L  L+ K       L +   EN
Sbjct: 289 HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348

Query: 120 LGKVDSLEELDISGTAIR-------QLSRLCSLTKWDLSDCNL 155
           L    +L ELD+S   I        QL  L  L   +LS    
Sbjct: 349 LE---NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 4/90 (4%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLEC--LPSPISENLGKVDSLE 127
            ++  L+ + +        P      + L     +  ++ E   +       +    SL 
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 128 ELDISGTAIRQLSR--LCSLTKWDLSDCNL 155
           +L I    IR++       L   D++D   
Sbjct: 810 QLQIGSNDIRKVDEKLTPQLYILDIADNPN 839

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.5 bits (92), Expect = 4e-04
 Identities = 19/112 (16%), Positives = 27/112 (24%), Gaps = 16/112 (14%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECL--------PSPISENLG 121
             +  L  L +               T L          ++            P S +L 
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADD-EDTGPKIQIFYMGYNNLEEFPASASLQ 570

Query: 122 KVDSLEELDISG---TAIRQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYLC 170
           K+  L  LD        +        LT   L    +     EIP D C   
Sbjct: 571 KMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQI----EEIPEDFCAFT 618

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 38.7 bits (90), Expect = 7e-04
 Identities = 14/120 (11%), Positives = 39/120 (32%), Gaps = 14/120 (11%)

Query: 66  ERFWGSMKSLTMLILDGTAIRELP--LSVEYLTGLFVLNFKDWQNLECLPSPISENLG-- 121
           E F      +  L      ++ +P   + + +  +  ++F  +  +      IS ++   
Sbjct: 612 EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF-SYNKIGSEGRNISCSMDDY 670

Query: 122 KVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNL----PVEGGEIPRDICYLCLL 172
           K  +   + +S   I++      +    ++   LS+  +             +     LL
Sbjct: 671 KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL 730

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 21/94 (22%), Positives = 35/94 (37%), Gaps = 9/94 (9%)

Query: 68  FWGSMKSLTMLILDGTAIRELPLSV-EYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL 126
            + S++ L  L +  T  +     +   LT L  L        +   S +  N     +L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT---NL 475

Query: 127 EELDISGTAIRQLSR-----LCSLTKWDLSDCNL 155
             LD+S   + Q+S      L  L   ++S  NL
Sbjct: 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 22/108 (20%), Positives = 36/108 (33%), Gaps = 26/108 (24%)

Query: 56  GNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLN-----FKDWQNLE 110
                 + +LE+       +T L L    +R LP ++  L  L VL       ++   + 
Sbjct: 450 HKDLTVLCHLEQL----LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 505

Query: 111 CLPSPISENLGKVDSLEELDISG------TAIRQLSRLCSLTKWDLSD 152
            LP            L+EL +         AI+ L     L   +L  
Sbjct: 506 NLPR-----------LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 61  RIANLERF-WGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISEN 119
            +  +    +  M+ L  L +    +  L L  + +  L VL+     +L  +      N
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL-SHNHLLHVE----RN 313

Query: 120 LGKVDSLEELDISGTAIRQLSR--LCSLTKWDLSD 152
             + D LE L +   +I  L      +L    LS 
Sbjct: 314 QPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSH 348

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129
            ++  LT L    T + E+ L+  + T L     +  + ++ L      ++     L  L
Sbjct: 251 STLSKLTTLHCIQTDLLEIDLT--HNTQLIYFQAEGCRKIKEL------DVTHNTQLYLL 302

Query: 130 DISGTAIRQL--SRLCSLTKWDLSDCNL 155
           D     I +L  S+   L    L++  L
Sbjct: 303 DCQAAGITELDLSQNPKLVYLYLNNTEL 330

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 18/103 (17%)

Query: 61  RIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNF-----KDWQNLECLPS- 114
           ++ +L      +K L  L L+   I ++   + +L  L  L        D   L  L   
Sbjct: 101 KVKDLSSL-KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLSRLTKL 158

Query: 115 --------PIS--ENLGKVDSLEELDISGTAIRQLSRLCSLTK 147
                    IS    L  +  L+ L +S   I  L  L  L  
Sbjct: 159 DTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKN 201

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 38.7 bits (91), Expect = 5e-04
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 61  RIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENL 120
           +I+++      +  L ML +    I ++   +  L+ L  L   + Q    L +   E +
Sbjct: 254 QISDINAV-KDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ----LGNEDMEVI 307

Query: 121 GKVDSLEELDISG---TAIRQLSRLCSLTKWDLSDCNL 155
           G + +L  L +S    T IR L+ L  +   D ++  +
Sbjct: 308 GGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVI 345

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 70  GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL 129
             M+ L  L +    +  L L  + +  L VL+     +L  +      N  + D LE L
Sbjct: 275 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDL-SHNHLLHVE----RNQPQFDRLENL 329

Query: 130 DISGTAIRQL--SRLCSLTKWDLSD 152
            +   +I  L  S   +L    LS 
Sbjct: 330 YLDHNSIVTLKLSTHHTLKNLTLSH 354

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.7 bits (91), Expect = 7e-04
 Identities = 29/109 (26%), Positives = 42/109 (38%), Gaps = 13/109 (11%)

Query: 67  RFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS 125
               +   L  L L    +   +P S+  L+ L  L    W N+  L   I + L  V +
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL--WLNM--LEGEIPQELMYVKT 467

Query: 126 LEELDISGTAI-----RQLSRLCSLTKWDLSDCNLPVEGGEIPRDICYL 169
           LE L +    +       LS   +L    LS+  L    GEIP+ I  L
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL---TGEIPKWIGRL 513

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	188
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.68
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.63
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.58
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.51
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.5
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.5
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.49
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.48
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.47
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.46
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.46
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.45
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.45
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.45
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.44
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.42
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.42
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.41
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.41
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.41
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.41
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.4
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.4
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.39
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.39
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.38
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.38
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.37
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.37
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.37
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.37
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.36
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.36
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.36
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.36
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.36
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.35
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.35
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.35
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.35
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.35
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.34
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.34
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.33
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.32
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.3
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.3
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.3
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.3
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.29
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.28
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.28
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.28
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.27
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.26
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.24
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.21
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.21
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.2
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.2
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.2
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.2
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.17
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.17
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.1
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.1
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.06
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.03
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.02
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.01
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.01
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.98
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.98
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.93
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.7
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.67
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.59
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.25
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.2
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.08
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.95
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.95
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.9
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.88
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.87
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.71
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.66
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.37
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.33
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	94.17
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.73
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	92.5
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	90.01
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	85.26
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	83.07

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.68  E-value=7.9e-17  Score=127.04  Aligned_cols=133  Identities=26%  Similarity=0.336  Sum_probs=91.1

Q ss_pred             ccceecEEEEccccccccccccccc---------CCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWG---------SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI  116 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~---------~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~  116 (188)
                      .+++|++|++++| +....+|..+.         .+++|++|++++|++..+|..++.+++|++|++++|. +..+    
T Consensus       148 ~l~~L~~L~L~~n-~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l----  221 (328)
T 4fcg_A          148 SLNRLRELSIRAC-PELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSAL----  221 (328)
T ss_dssp             GCTTCCEEEEEEE-TTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCC----
T ss_pred             cCcCCCEEECCCC-CCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcC----
Confidence            4667777777776 66666665443         3777777777777777777777777788888887776 5544    


Q ss_pred             ccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh----------hhcCCCCch
Q 047302          117 SENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL----------FKDEPESNS  181 (188)
Q Consensus       117 ~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L----------~~~lp~~~~  181 (188)
                      |..++.+++|+.|++++|.+.+.     ..+++|+.|++++|++.   +.+|..+..+++|          .+.+|+++.
T Consensus       222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~---~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~  298 (328)
T 4fcg_A          222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL---LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA  298 (328)
T ss_dssp             CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC---CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred             chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch---hhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence            34457777788888877765443     56777788888777655   3466666666655          456777777


Q ss_pred             hhhccc
Q 047302          182 QIRRNV  187 (188)
Q Consensus       182 ~l~~L~  187 (188)
                      ++++|+
T Consensus       299 ~L~~L~  304 (328)
T 4fcg_A          299 QLPANC  304 (328)
T ss_dssp             GSCTTC
T ss_pred             hccCce
Confidence            776664

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.63  E-value=2.5e-16  Score=124.13  Aligned_cols=66  Identities=21%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLP  113 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~  113 (188)
                      .+++|++|++++  +.+..+|..+..+++|++|++++|.+..+|..+..+++|++|++++|..+..+|
T Consensus       102 ~l~~L~~L~L~~--n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p  167 (328)
T 4fcg_A          102 RLSHLQHMTIDA--AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELP  167 (328)
T ss_dssp             GGTTCSEEEEES--SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCC
T ss_pred             hCCCCCEEECCC--CCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccC
Confidence            477888888888  566678877788888888888888888888788888888888888765444444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.58  E-value=9.7e-15  Score=113.20  Aligned_cols=130  Identities=24%  Similarity=0.256  Sum_probs=83.4

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|++|++++  +.+..++.. ..+++|++|++++|++..+|..+..+++|++|++++|. +..++   |..+..+++
T Consensus        53 ~l~~L~~L~L~~--n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~---~~~~~~l~~  125 (290)
T 1p9a_G           53 PYTRLTQLNLDR--AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLP---LGALRGLGE  125 (290)
T ss_dssp             TCTTCCEEECTT--SCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCC---SSTTTTCTT
T ss_pred             cCCCCCEEECCC--CccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccC---HHHHcCCCC
Confidence            467777777777  566666554 66677777777777777777666777777777777775 55553   233566677


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhh-HHHhhh---------hhcCCCCchhhhcc
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDI-CYLCLL---------FKDEPESNSQIRRN  186 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l-~~l~~L---------~~~lp~~~~~l~~L  186 (188)
                      |+.|++++|.++.+     ..+++|+.|++++|+++.    +|... ..+++|         +..+|.++..+.+|
T Consensus       126 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L  197 (290)
T 1p9a_G          126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE----LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLL  197 (290)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCC
T ss_pred             CCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc----cCHHHhcCcCCCCEEECCCCcCCccChhhcccccC
Confidence            77777777776655     456667777777777765    55532 334443         55566665554443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.51  E-value=1.3e-13  Score=101.43  Aligned_cols=129  Identities=25%  Similarity=0.295  Sum_probs=96.4

Q ss_pred             ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.++.++. .+..+++|++|++++|++..+|+. +..+++|++|++++|. +..++   +..+..+
T Consensus        50 ~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~~~l  123 (208)
T 2o6s_A           50 ELTSLTQLYLGG--NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLP---DGVFDKL  123 (208)
T ss_dssp             TCTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred             ccccCcEEECCC--CccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccC---HhHhccC
Confidence            578899999998  67777664 457888999999999998877654 6788999999999986 66654   2335788


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh----hhcCCCCchhhh
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL----FKDEPESNSQIR  184 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L----~~~lp~~~~~l~  184 (188)
                      ++|+.|++++|.+++.     ..+++|+.|++++|.+..    -...+..+..-    .+.+|++++.+.
T Consensus       124 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          124 TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            8999999999988776     567889999999998774    23344444322    456777666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.50  E-value=1.1e-13  Score=106.02  Aligned_cols=106  Identities=21%  Similarity=0.336  Sum_probs=59.2

Q ss_pred             ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..++. .+..+++|++|++++|.+..+|+. +..+++|++|++++|. +..++   +..+..+
T Consensus        59 ~l~~L~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l  132 (270)
T 2o6q_A           59 RLTKLRLLYLND--NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLP---PRVFDSL  132 (270)
T ss_dssp             SCTTCCEEECCS--SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred             CCCCCCEEECCC--CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeC---HHHhCcC
Confidence            456666666666  45555543 235566666666666666655432 4556666666666664 44443   2234555


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|++|++++|.++..     ..+++|+.|++++|.++.
T Consensus       133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  171 (270)
T 2o6q_A          133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR  171 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcE
Confidence            5666666666655544     345556666666655554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.50  E-value=9.6e-14  Score=117.02  Aligned_cols=116  Identities=18%  Similarity=0.174  Sum_probs=72.2

Q ss_pred             eecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302           49 SVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL  126 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L  126 (188)
                      ++++|++++  |.++.++ ..+.++++|++|++++|+|+.+|+ .+..+++|++|++++|. ++.++   +..+..+++|
T Consensus        53 ~~~~LdLs~--N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~---~~~f~~L~~L  126 (635)
T 4g8a_A           53 STKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA---LGAFSGLSSL  126 (635)
T ss_dssp             TCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC---GGGGTTCTTC
T ss_pred             CCCEEEeeC--CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCC---HHHhcCCCCC
Confidence            566777776  5666665 345666777777777777766654 36667777777777765 55554   2335666667


Q ss_pred             cEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          127 EELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       127 ~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      ++|++++|.++.+     +.+++|++|++++|.++.  ..+|..+..++.|
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~l~~L  175 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNL  175 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCcccc--CCCchhhccchhh
Confidence            7777777666554     456666777777666654  3345555555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.49  E-value=8.8e-14  Score=107.10  Aligned_cols=106  Identities=21%  Similarity=0.274  Sum_probs=49.2

Q ss_pred             cceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      +++|++|++++| ..+..+ +..+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++   +..++.++
T Consensus        79 l~~L~~L~l~~n-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~  153 (285)
T 1ozn_A           79 LALLEQLDLSDN-AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALP---DDTFRDLG  153 (285)
T ss_dssp             CTTCCEEECCSC-TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTCT
T ss_pred             ccCCCEEeCCCC-CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccC---HhHhccCC
Confidence            444444555442 223333 23334444555555555544433 2234445555555555543 33332   12234555


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      +|+.|++++|.+++.     ..+++|+.|++++|.+..
T Consensus       154 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (285)
T 1ozn_A          154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH  191 (285)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence            555555555555443     344555555555555553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.49  E-value=6.8e-14  Score=107.74  Aligned_cols=106  Identities=19%  Similarity=0.217  Sum_probs=60.7

Q ss_pred             ccceecEEEEcccccccccc-cccccCCCCccEEeecCcc-Cccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTA-IREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      .+++|++|++++  +.+..+ +..+..+++|++|++++|. +..+ |..+..+++|++|++++|. +..++   |..+..
T Consensus        54 ~~~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~  127 (285)
T 1ozn_A           54 ACRNLTILWLHS--NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELG---PGLFRG  127 (285)
T ss_dssp             TCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCC---TTTTTT
T ss_pred             cCCCCCEEECCC--CccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEEC---HhHhhC
Confidence            456666666666  344444 4445566666666666664 5544 4445566666666666665 44332   233455


Q ss_pred             CCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      +++|++|++++|.++..     ..+++|+.|++++|.++.
T Consensus       128 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            66666666666665544     345566666666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.48  E-value=1.6e-13  Score=100.30  Aligned_cols=103  Identities=19%  Similarity=0.133  Sum_probs=53.2

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL  126 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L  126 (188)
                      +++|+.+++++  +.+..+| .+..+++|++|++++|.+..++ .+..+++|++|++++|. +...   .|..+..+++|
T Consensus        43 l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~-l~~~---~~~~l~~l~~L  114 (197)
T 4ezg_A           43 MNSLTYITLAN--INVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD-VTSD---KIPNLSGLTSL  114 (197)
T ss_dssp             HHTCCEEEEES--SCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT-CBGG---GSCCCTTCTTC
T ss_pred             cCCccEEeccC--CCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc-cCcc---cChhhcCCCCC
Confidence            44555555555  3455555 3455555555555555554443 45555555555555554 3221   12334555555


Q ss_pred             cEEEccCCccccc-----CCCCCCCEeccCCCC-CCC
Q 047302          127 EELDISGTAIRQL-----SRLCSLTKWDLSDCN-LPV  157 (188)
Q Consensus       127 ~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~-l~~  157 (188)
                      ++|++++|.+++.     ..+++|+.|++++|. +.+
T Consensus       115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~  151 (197)
T 4ezg_A          115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD  151 (197)
T ss_dssp             CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC
T ss_pred             CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc
Confidence            5555555555542     455555555555554 443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.48  E-value=3.3e-13  Score=103.41  Aligned_cols=126  Identities=24%  Similarity=0.330  Sum_probs=72.0

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCC
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTG   97 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~   97 (188)
                      ..+..++++++.-..+.     .+ ..+++|++|++++  +.+..++. .+..+++|++|++++|++..+|+. +..+++
T Consensus        63 ~~L~~L~l~~n~l~~~~-----~l-~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDIS-----AL-KELTNLTYLILTG--NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             TTCCEEECTTSCCCCCG-----GG-TTCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCcEEECCCCCCCCch-----hh-cCCCCCCEEECCC--CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence            44555566554432221     11 2566777777777  45555443 346677777777777777655543 566777


Q ss_pred             CcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302           98 LFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus        98 L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      |++|++++|. +..++   +..++.+++|+.|++++|.+++.     ..+++|+.|++++|.++.
T Consensus       135 L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          135 LTYLNLAHNQ-LQSLP---KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             CCEEECCSSC-CCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCEEECCCCc-cCccC---HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            7777777765 55443   22235556666666666655544     345556666666665553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.47  E-value=2.7e-13  Score=102.64  Aligned_cols=117  Identities=24%  Similarity=0.311  Sum_probs=80.7

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..++ ..+..+++|++|++++|++..+|+ .+..+++|++|++++|. +..++   +..+..+
T Consensus        57 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~~~l  130 (251)
T 3m19_A           57 GLTKLTWLNLDY--NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLP---SGVFDRL  130 (251)
T ss_dssp             TCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred             CcccCCEEECCC--CcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcC---hhHhccC
Confidence            577788888887  5665544 345777788888888888876654 35777888888888876 66554   2234677


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCCh-hhHHHhhh
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPR-DICYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~-~l~~l~~L  172 (188)
                      ++|+.|++++|.++.+     ..+++|++|++++|.++.    +|. .+..+++|
T Consensus       131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L  181 (251)
T 3m19_A          131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS----VPHGAFDRLGKL  181 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred             CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc----cCHHHHhCCCCC
Confidence            7888888888877665     466778888888887775    444 34444444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=1.3e-13  Score=98.15  Aligned_cols=106  Identities=23%  Similarity=0.163  Sum_probs=59.1

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcc-cchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRE-LPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+++|++|++++  +.+..+ ..+..+++|++|++++|.+.. +|..+..+++|++|++++|. +..++.  +..+..++
T Consensus        47 ~l~~L~~L~l~~--n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--~~~l~~l~  120 (168)
T 2ell_A           47 EFVNLEFLSLIN--VGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDIST--LEPLKKLE  120 (168)
T ss_dssp             GGGGCCEEEEES--SCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGG--GGGGSSCS
T ss_pred             hCCCCCEEeCcC--CCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchh--HHHHhcCC
Confidence            455666666666  345444 344556666666666666654 45445556666666666664 444321  13345566


Q ss_pred             cccEEEccCCccccc--------CCCCCCCEeccCCCCCCC
Q 047302          125 SLEELDISGTAIRQL--------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~~l~~  157 (188)
                      +|+.|++++|.+++.        ..+++|+.|++++|.+.+
T Consensus       121 ~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~  161 (168)
T 2ell_A          121 CLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE  161 (168)
T ss_dssp             CCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred             CCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence            666666666655443        345666666666665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.46  E-value=4.3e-13  Score=102.76  Aligned_cols=151  Identities=24%  Similarity=0.330  Sum_probs=112.0

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchh-hhcCCCC
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGL   98 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L   98 (188)
                      ..+..+.+.+.+-..+..     + ..+++|++|++++  +.+..++ .+..+++|++|++++|.+..+++. +..+++|
T Consensus        41 ~~L~~L~l~~~~i~~~~~-----l-~~l~~L~~L~l~~--n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  111 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQG-----I-QYLPNVRYLALGG--NKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNL  111 (272)
T ss_dssp             TTCCEEECTTSCCCCCTT-----G-GGCTTCCEEECTT--SCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cceeeeeeCCCCcccccc-----c-ccCCCCcEEECCC--CCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence            445555666544332221     1 2589999999999  5777665 568899999999999999987654 6899999


Q ss_pred             cEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302           99 FVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus        99 ~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      ++|++++|. +..++   +..++.+++|++|++++|.+++.     ..+++|+.|++++|.++.    +|.. +..+++|
T Consensus       112 ~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L  183 (272)
T 3rfs_A          112 KELVLVENQ-LQSLP---DGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS----LPEGVFDKLTQL  183 (272)
T ss_dssp             CEEECTTSC-CCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTC
T ss_pred             CEEECCCCc-CCccC---HHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc----cCHHHhcCCccC
Confidence            999999997 66654   33468899999999999998876     578899999999999986    5553 4555555


Q ss_pred             ---------hhcCCC-Cchhhhccc
Q 047302          173 ---------FKDEPE-SNSQIRRNV  187 (188)
Q Consensus       173 ---------~~~lp~-~~~~l~~L~  187 (188)
                               +..+|. .+..+++|+
T Consensus       184 ~~L~L~~N~l~~~~~~~~~~l~~L~  208 (272)
T 3rfs_A          184 KDLRLYQNQLKSVPDGVFDRLTSLQ  208 (272)
T ss_dssp             CEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             CEEECCCCcCCccCHHHHhCCcCCC
Confidence                     444444 355666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.46  E-value=2.1e-13  Score=105.70  Aligned_cols=122  Identities=20%  Similarity=0.287  Sum_probs=76.9

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF   99 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~   99 (188)
                      ..+..+.+.+++-..+..     + ..+++|++|++++  +.+..++. +..+++|++|++++|.+..+| .+..+++|+
T Consensus        46 ~~L~~L~l~~~~i~~~~~-----~-~~l~~L~~L~L~~--n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~  115 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-----I-QYLPNVTKLFLNG--NKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLK  115 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-----G-GGCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCC
T ss_pred             CcccEEEccCCCcccChh-----H-hcCCCCCEEEccC--CccCCCcc-cccCCCCCEEECCCCcCCCCh-hhccCCCCC
Confidence            345555666544333321     1 1467777888877  56666655 577777777777777777665 367777777


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      +|++++|. +..+     ..+..+++|+.|++++|.++++   ..+++|+.|++++|.+..
T Consensus       116 ~L~L~~n~-i~~~-----~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~  170 (291)
T 1h6t_A          116 SLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD  170 (291)
T ss_dssp             EEECTTSC-CCCC-----GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred             EEECCCCc-CCCC-----hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc
Confidence            77777775 4443     2345666677777776666554   556666666666666665

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.46  E-value=2.8e-13  Score=110.48  Aligned_cols=107  Identities=18%  Similarity=0.282  Sum_probs=58.8

Q ss_pred             ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..++. .+..+++|++|++++|++..+|. .+..+++|+.|++++|..+..++   +..+..+
T Consensus       110 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l  184 (440)
T 3zyj_A          110 GLANLNTLELFD--NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS---EGAFEGL  184 (440)
T ss_dssp             TCSSCCEEECCS--SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---TTTTTTC
T ss_pred             CCccCCEEECCC--CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC---cchhhcc
Confidence            355666666665  45544443 34555666666666666655443 34555555555555543333332   1234556


Q ss_pred             CcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|+.|++++|.++++   ..+++|+.|++++|.++.
T Consensus       185 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA  221 (440)
T ss_dssp             SSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE
T ss_pred             cccCeecCCCCcCccccccCCCcccCEEECCCCccCc
Confidence            6666666666666554   455566666666666554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.45  E-value=1.8e-13  Score=95.50  Aligned_cols=105  Identities=22%  Similarity=0.308  Sum_probs=86.7

Q ss_pred             ccceecEEEEcccccccc--cccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIA--NLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      ..++++.+++++|  .+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|. +...   +|..++.+
T Consensus        15 ~~~~l~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~---~~~~~~~l   87 (149)
T 2je0_A           15 TPSDVKELVLDNS--RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGG---LEVLAEKC   87 (149)
T ss_dssp             CGGGCSEEECTTC--BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSC---THHHHHHC
T ss_pred             CCccCeEEEccCC--cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccch---HHHHhhhC
Confidence            4678999999994  665  7887778899999999999999877 578889999999999987 5542   25555678


Q ss_pred             CcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|++|++++|.+++.      ..+++|++|++++|.++.
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG
T ss_pred             CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc
Confidence            8999999999988764      778899999999998886

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.45  E-value=3.8e-13  Score=104.24  Aligned_cols=117  Identities=24%  Similarity=0.276  Sum_probs=97.8

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+++|++|++++  +.+..+|..+..+++|++|++++|++..+| ..+..+++|+.|++++|. +..++   +..+..++
T Consensus        75 ~l~~L~~L~Ls~--N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~---~~~~~~l~  148 (290)
T 1p9a_G           75 TLPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLP---PGLLTPTP  148 (290)
T ss_dssp             CCTTCCEEECCS--SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCC---TTTTTTCT
T ss_pred             CCCcCCEEECCC--CcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccC---hhhccccc
Confidence            678999999999  788889988888999999999999999886 458889999999999997 77664   23457889


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +|+.|++++|.++.+     ..+++|+.|++++|.++.    +|..+..+..+
T Consensus       149 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~----ip~~~~~~~~L  197 (290)
T 1p9a_G          149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT----IPKGFFGSHLL  197 (290)
T ss_dssp             TCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCCC
T ss_pred             CCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc----cChhhcccccC
Confidence            999999999998876     567889999999999887    88776655444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.45  E-value=4e-13  Score=101.71  Aligned_cols=106  Identities=25%  Similarity=0.389  Sum_probs=65.0

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..++ ..+..+++|++|++++|++..+|+. +..+++|+.|++++|. +..++   +..++.+
T Consensus        81 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l  154 (251)
T 3m19_A           81 DLTELGTLGLAN--NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIP---AGAFDKL  154 (251)
T ss_dssp             TCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred             cCCcCCEEECCC--CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccC---HHHcCcC
Confidence            456667777766  4555544 3445666677777777766666543 4566667777776665 55443   2234566


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|+.|++++|.++..     ..+++|+.|++++|.+..
T Consensus       155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred             cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence            6677777777666554     455666677777666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.45  E-value=2.7e-13  Score=110.92  Aligned_cols=107  Identities=17%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..++. .+..+++|++|++++|++..+|. .+..+++|+.|++++|..+..++   +..+..+
T Consensus       121 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~---~~~~~~l  195 (452)
T 3zyi_A          121 GLASLNTLELFD--NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS---EGAFEGL  195 (452)
T ss_dssp             TCTTCCEEECCS--SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC---TTTTTTC
T ss_pred             CcccCCEEECCC--CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC---hhhccCC
Confidence            345555555555  34444432 23445555555555555554433 34445555555555433333332   1224556


Q ss_pred             CcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|+.|++++|.++++   ..+++|+.|++++|.++.
T Consensus       196 ~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          196 FNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPE  232 (452)
T ss_dssp             TTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSE
T ss_pred             CCCCEEECCCCcccccccccccccccEEECcCCcCcc
Confidence            6666666666666554   455556666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=6.4e-13  Score=101.65  Aligned_cols=115  Identities=22%  Similarity=0.331  Sum_probs=95.1

Q ss_pred             ceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           48 TSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ++++.|++++  +.+..++. .+..+++|++|++++|.+..+|.. +..+++|++|++++|. +..++   +..+..+++
T Consensus        37 ~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~~  110 (270)
T 2o6q_A           37 ADTKKLDLQS--NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALP---IGVFDQLVN  110 (270)
T ss_dssp             TTCSEEECCS--SCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCC---TTTTTTCSS
T ss_pred             CCCCEEECcC--CCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCC---HhHcccccC
Confidence            5799999999  67777764 678999999999999999988765 4789999999999997 77665   234678999


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      |+.|++++|.++..     ..+++|++|++++|.++.    +|.. +..+++|
T Consensus       111 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L  159 (270)
T 2o6q_A          111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS----LPKGVFDKLTSL  159 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTC
T ss_pred             CCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc----cCHhHccCCccc
Confidence            99999999998776     678999999999999887    6654 4555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.44  E-value=4.4e-13  Score=104.65  Aligned_cols=122  Identities=16%  Similarity=0.232  Sum_probs=67.4

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF   99 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~   99 (188)
                      ..+..+.+.+++-..+..     + ..+++|++|++++  +.+..++. +..+++|++|++++|++..++ .+..+++|+
T Consensus        41 ~~L~~L~l~~~~i~~l~~-----~-~~l~~L~~L~L~~--n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEG-----V-QYLNNLIGLELKD--NQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (308)
T ss_dssp             HTCCEEECTTSCCCCCTT-----G-GGCTTCCEEECCS--SCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             CCcCEEEeeCCCccCchh-----h-hccCCCCEEEccC--CcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence            445555565544333321     1 1466777777777  45655555 566777777777777766655 466666667


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      +|++++|. +..++     .+..+++|+.|++++|.+++.   ..+++|+.|++++|.++.
T Consensus       111 ~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~  165 (308)
T 1h6u_A          111 TLDLTSTQ-ITDVT-----PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD  165 (308)
T ss_dssp             EEECTTSC-CCCCG-----GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             EEECCCCC-CCCch-----hhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC
Confidence            77666665 44432     134555555555555554443   344444444444444443

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.44  E-value=5.1e-13  Score=99.44  Aligned_cols=105  Identities=23%  Similarity=0.338  Sum_probs=57.5

Q ss_pred             ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..+ |..+..+++|++|++++|++..+|+. +..+++|+.|++++|. +..++   |..+..+
T Consensus        54 ~l~~L~~L~Ls~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~---~~~~~~l  127 (220)
T 2v9t_B           54 PYKKLRRIDLSN--NQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLR---VDAFQDL  127 (220)
T ss_dssp             TCTTCCEEECCS--SCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTC
T ss_pred             CCCCCCEEECCC--CcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeC---HHHcCCC
Confidence            355566666665  444443 34455556666666666666555543 3455666666666654 44332   2334555


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~  156 (188)
                      ++|+.|++++|.++.+     ..+++|+.|++++|.+.
T Consensus       128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            6666666666655544     34555666666666554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.43  E-value=4.8e-13  Score=99.60  Aligned_cols=115  Identities=22%  Similarity=0.229  Sum_probs=96.2

Q ss_pred             ceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           48 TSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ++++.|++++  +.+..++. .+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++.   ..+..+++
T Consensus        32 ~~l~~L~l~~--n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~---~~f~~l~~  105 (220)
T 2v9t_B           32 ETITEIRLEQ--NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPK---SLFEGLFS  105 (220)
T ss_dssp             TTCCEEECCS--SCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCT---TTTTTCTT
T ss_pred             cCCCEEECCC--CcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCH---hHccCCCC
Confidence            6899999999  78877764 678899999999999999976 6679999999999999997 777752   33578999


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      |+.|++++|.++..     ..+++|+.|++++|.++.    ++.. +..+++|
T Consensus       106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L  154 (220)
T 2v9t_B          106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT----IAKGTFSPLRAI  154 (220)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred             CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE----ECHHHHhCCCCC
Confidence            99999999999876     678899999999999987    5543 4544444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.43  E-value=6.1e-13  Score=94.67  Aligned_cols=116  Identities=19%  Similarity=0.282  Sum_probs=97.2

Q ss_pred             ccceecEEEEcccccccc--cccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIA--NLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      ..++|+.|++++|  .+.  .+|..+..+++|++|++++|.+..+ ..+..+++|++|++++|. +...   +|..+..+
T Consensus        22 ~~~~L~~L~l~~n--~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~---~~~~~~~l   94 (168)
T 2ell_A           22 TPAAVRELVLDNC--KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGG---LDMLAEKL   94 (168)
T ss_dssp             CTTSCSEEECCSC--BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSC---CCHHHHHC
T ss_pred             CcccCCEEECCCC--CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchH---HHHHHhhC
Confidence            5689999999994  676  8888888999999999999999877 678899999999999997 5552   24555679


Q ss_pred             CcccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCCh----hhHHHhhh
Q 047302          124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPR----DICYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~----~l~~l~~L  172 (188)
                      ++|+.|++++|.++++      ..+++|+.|++++|.++.    +|.    .+..+++|
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~L  149 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN----LNDYRESVFKLLPQL  149 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT----STTHHHHHHTTCSSC
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc----hHHHHHHHHHhCccC
Confidence            9999999999998774      688999999999999987    666    45555555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=8.2e-13  Score=100.94  Aligned_cols=120  Identities=17%  Similarity=0.173  Sum_probs=80.9

Q ss_pred             eEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcE
Q 047302           21 MIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFV  100 (188)
Q Consensus        21 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~  100 (188)
                      .+..+++.+++-..+..     + ..+++|+.|++++  +.+..++. +..+++|+.|++++|++..+|.. .. ++|++
T Consensus        42 ~L~~L~l~~n~i~~l~~-----l-~~l~~L~~L~L~~--N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~-~~-~~L~~  110 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLAG-----M-QFFTNLKELHLSH--NQISDLSP-LKDLTKLEELSVNRNRLKNLNGI-PS-ACLSR  110 (263)
T ss_dssp             TCSEEECTTSCCCCCTT-----G-GGCTTCCEEECCS--SCCCCCGG-GTTCSSCCEEECCSSCCSCCTTC-CC-SSCCE
T ss_pred             cCcEEECcCCCcccchH-----H-hhCCCCCEEECCC--CccCCChh-hccCCCCCEEECCCCccCCcCcc-cc-CcccE
Confidence            34555555544333321     1 2467777888877  56666665 57777788888888877776643 22 77788


Q ss_pred             EEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          101 LNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       101 L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      |++++|. +..+     +.+..+++|+.|++++|.+++.   ..+++|+.|++++|.++.
T Consensus       111 L~L~~N~-l~~~-----~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A          111 LFLDNNE-LRDT-----DSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             EECCSSC-CSBS-----GGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCB
T ss_pred             EEccCCc-cCCC-----hhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcc
Confidence            8887776 5544     2357778888888888877765   677788888888888776

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.42  E-value=8.6e-13  Score=101.06  Aligned_cols=106  Identities=25%  Similarity=0.316  Sum_probs=74.1

Q ss_pred             ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..++. .+..+++|++|++++|.+..++ ..+..+++|++|++++|. +..++   +..++.+
T Consensus        50 ~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l  123 (276)
T 2z62_A           50 SFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLE---NFPIGHL  123 (276)
T ss_dssp             TCTTCSEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCST---TCCCTTC
T ss_pred             cccCCcEEECCC--CcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccC---chhcccC
Confidence            567778888877  46655543 5577777888888888777554 456777788888887776 55443   2235677


Q ss_pred             CcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|+.|++++|.+++.      ..+++|++|++++|.++.
T Consensus       124 ~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence            7888888888877652      567778888888887775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.42  E-value=3.5e-13  Score=116.49  Aligned_cols=113  Identities=22%  Similarity=0.253  Sum_probs=98.9

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+.+|+.|++++  +.+..+|..+..+++|++|+|++|.+..+|..+..+++|++|++++|. +..+    |..++.+++
T Consensus       222 ~l~~L~~L~Ls~--n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l----p~~~~~l~~  294 (727)
T 4b8c_D          222 DDQLWHALDLSN--LQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSL----PAELGSCFQ  294 (727)
T ss_dssp             CCCCCCEEECTT--SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSC----CSSGGGGTT
T ss_pred             cCCCCcEEECCC--CCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCcc----ChhhcCCCC
Confidence            688999999999  678889887789999999999999999999999999999999999997 7766    555689999


Q ss_pred             ccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHH
Q 047302          126 LEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICY  168 (188)
Q Consensus       126 L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~  168 (188)
                      |++|++++|.++.+    +.+++|+.|+|++|.++.   .+|..+..
T Consensus       295 L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~---~~p~~~~~  338 (727)
T 4b8c_D          295 LKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK---QFLKILTE  338 (727)
T ss_dssp             CSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS---HHHHHHHH
T ss_pred             CCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC---CChHHHhh
Confidence            99999999998876    788999999999999984   35555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.42  E-value=4.1e-13  Score=104.26  Aligned_cols=104  Identities=20%  Similarity=0.273  Sum_probs=55.3

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccch--hhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL--SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      +++|++|++++  +.+..+|..+..+++|++|++++|++..++.  .+..+++|++|++++|. +....   +..+..++
T Consensus        77 ~~~L~~L~Ls~--n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~  150 (306)
T 2z66_A           77 TTSLKYLDLSF--NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF---NGIFNGLS  150 (306)
T ss_dssp             CSCCCEEECCS--CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECS---TTTTTTCT
T ss_pred             ccccCEEECCC--CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccc---hhhcccCc
Confidence            56666666666  4555566555666666666666666665543  45566666666666664 33221   22234444


Q ss_pred             cccEEEccCCcccc--c----CCCCCCCEeccCCCCCC
Q 047302          125 SLEELDISGTAIRQ--L----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       125 ~L~~L~l~~~~i~~--~----~~l~~L~~L~l~~~~l~  156 (188)
                      +|+.|++++|.+++  .    ..+++|+.|++++|.++
T Consensus       151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  188 (306)
T 2z66_A          151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE  188 (306)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred             CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence            55555555554433  1    33444444444444443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.42  E-value=5.5e-13  Score=104.25  Aligned_cols=135  Identities=16%  Similarity=0.223  Sum_probs=86.7

Q ss_pred             ccceecEEEEcccccccc-cccccccCCCCccEEeecCccCc-ccchhhhcCC-CCcEEEccCCCCCc-cCCCc------
Q 047302           46 YGTSVGTSIVGNCYKRIA-NLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLT-GLFVLNFKDWQNLE-CLPSP------  115 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~-~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~-~L~~L~l~~~~~l~-~l~~~------  115 (188)
                      .+++|++|++++  +.+. .+|..+..+++|++|++++|++. .+|..+..++ .|+.|++++|. +. ..|..      
T Consensus       123 ~l~~L~~L~Ls~--N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~L  199 (313)
T 1ogq_A          123 QIKTLVTLDFSY--NALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFANLNL  199 (313)
T ss_dssp             GCTTCCEEECCS--SEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE-EEEECCGGGGGCCC
T ss_pred             CCCCCCEEeCCC--CccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe-eeccCChHHhCCcc
Confidence            466677777766  3443 55666666666777777766665 5666666665 66666666664 32 12111      


Q ss_pred             -------------cccccCCCCcccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh------
Q 047302          116 -------------ISENLGKVDSLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL------  172 (188)
Q Consensus       116 -------------~~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L------  172 (188)
                                   .|..+..+++|+.|++++|.++..    ..+++|++|++++|.++   +.+|..+..++.|      
T Consensus       200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~Ls  276 (313)
T 1ogq_A          200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY---GTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE---ECCCGGGGGCTTCCEEECC
T ss_pred             cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCccc---CcCChHHhcCcCCCEEECc
Confidence                         145567777888888888877643    56778888889888887   2378877777766      


Q ss_pred             ---h-hcCCCCchhhhccc
Q 047302          173 ---F-KDEPESNSQIRRNV  187 (188)
Q Consensus       173 ---~-~~lp~~~~~l~~L~  187 (188)
                         + +.+|.. .++++|+
T Consensus       277 ~N~l~~~ip~~-~~l~~L~  294 (313)
T 1ogq_A          277 FNNLCGEIPQG-GNLQRFD  294 (313)
T ss_dssp             SSEEEEECCCS-TTGGGSC
T ss_pred             CCcccccCCCC-ccccccC
Confidence               3 356664 5555553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.42  E-value=9.1e-13  Score=111.13  Aligned_cols=105  Identities=26%  Similarity=0.311  Sum_probs=49.7

Q ss_pred             ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..+ |..+.++++|++|++++|.+..+ |..++.+++|++|++++|. +..++   +..++.+
T Consensus        54 ~l~~L~~L~Ls~--n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l  127 (606)
T 3vq2_A           54 NFSELQWLDLSR--CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-LASLE---SFPIGQL  127 (606)
T ss_dssp             TCTTCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSC-CCCSS---SSCCTTC
T ss_pred             CCccCcEEeCCC--CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCc-ccccc---ccccCCC
Confidence            345555555555  233333 23344555555555555555443 3344555555555555554 33332   1223455


Q ss_pred             CcccEEEccCCccccc------CCCCCCCEeccCCCCCC
Q 047302          124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~  156 (188)
                      ++|++|++++|.+.+.      +.+++|++|++++|.++
T Consensus       128 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~  166 (606)
T 3vq2_A          128 ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ  166 (606)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred             CCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcce
Confidence            5555555555554421      44555555555555544

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.42  E-value=1.9e-13  Score=106.91  Aligned_cols=116  Identities=16%  Similarity=0.265  Sum_probs=79.5

Q ss_pred             ccceecEEEEccccccc-ccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRI-ANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i-~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|+++++ +.+ ..+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|. +..   .+|..+..+
T Consensus        74 ~l~~L~~L~L~~~-n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~---~~p~~~~~l  148 (313)
T 1ogq_A           74 NLPYLNFLYIGGI-NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA-LSG---TLPPSISSL  148 (313)
T ss_dssp             GCTTCSEEEEEEE-TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE-EES---CCCGGGGGC
T ss_pred             CCCCCCeeeCCCC-CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc-cCC---cCChHHhcC
Confidence            5778888888743 344 467777777888888888888876 677777888888888888876 441   124555777


Q ss_pred             CcccEEEccCCccccc-----CCCC-CCCEeccCCCCCCCCCCCCChhhHHH
Q 047302          124 DSLEELDISGTAIRQL-----SRLC-SLTKWDLSDCNLPVEGGEIPRDICYL  169 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~-~L~~L~l~~~~l~~~~~~lp~~l~~l  169 (188)
                      ++|++|++++|.+++.     ..++ +|+.|++++|.+.   +.+|..+..+
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~---~~~~~~~~~l  197 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT---GKIPPTFANL  197 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE---EECCGGGGGC
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeee---ccCChHHhCC
Confidence            7788888887777632     4555 6777777777766   2255555444

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.42  E-value=5.2e-13  Score=115.99  Aligned_cols=61  Identities=15%  Similarity=0.266  Sum_probs=37.1

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~  107 (188)
                      .+++|++|++++| .....+|..+..+++|++|++++|++. .+|..+..+++|+.+++++|.
T Consensus       488 ~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          488 NCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             GCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             cCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            4556666666663 222355655566666666666666665 556666666666666666664

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.41  E-value=9.6e-13  Score=97.95  Aligned_cols=105  Identities=14%  Similarity=0.244  Sum_probs=65.7

Q ss_pred             ccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..++. .+..+++|++|++++|.+..+++. +..+++|++|++++|. +..++   |..+..+
T Consensus        55 ~l~~L~~L~L~~--N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l  128 (220)
T 2v70_A           55 KLPQLRKINFSN--NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVG---NDSFIGL  128 (220)
T ss_dssp             GCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBC---TTSSTTC
T ss_pred             cCCCCCEEECCC--CcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeEC---HhHcCCC
Confidence            466677777766  45555543 456666777777777766655443 5666777777777665 44442   3344666


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~  156 (188)
                      ++|+.|++++|.++..     ..+++|+.|++++|.+.
T Consensus       129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            6677777777766554     45666777777777665

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=1.5e-12  Score=97.45  Aligned_cols=116  Identities=28%  Similarity=0.383  Sum_probs=95.5

Q ss_pred             cceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .++|++|++++  +.+..+ |..+..+++|++|++++|++..+|.. +..+++|++|++++|. +..++   +..+..++
T Consensus        39 ~~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~---~~~~~~l~  112 (229)
T 3e6j_A           39 PTNAQILYLHD--NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLP---SAVFDRLV  112 (229)
T ss_dssp             CTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTCT
T ss_pred             CCCCCEEEcCC--CccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccC---hhHhCcch
Confidence            47899999999  577665 56678999999999999999988754 6889999999999997 77664   23357899


Q ss_pred             cccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCCh-hhHHHhhh
Q 047302          125 SLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPR-DICYLCLL  172 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~-~l~~l~~L  172 (188)
                      +|+.|++++|.++.+    ..+++|++|++++|.++.    +|. .+..+++|
T Consensus       113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L  161 (229)
T 3e6j_A          113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS----IPHGAFDRLSSL  161 (229)
T ss_dssp             TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC----CCTTTTTTCTTC
T ss_pred             hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc----cCHHHHhCCCCC
Confidence            999999999999877    688899999999999987    664 35555555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.41  E-value=7.4e-13  Score=111.60  Aligned_cols=138  Identities=22%  Similarity=0.224  Sum_probs=107.3

Q ss_pred             EEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCc
Q 047302           22 IGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLF   99 (188)
Q Consensus        22 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~   99 (188)
                      +..+++++..-..+....    +..+++|++|++++  +.++.+++ .+.++++|++|++++|+++.+|+. +..+++|+
T Consensus        54 ~~~LdLs~N~i~~l~~~~----f~~l~~L~~L~Ls~--N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~  127 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYS----FFSFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ  127 (635)
T ss_dssp             CCEEECTTSCCCEECTTT----TTTCTTCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCC
T ss_pred             CCEEEeeCCCCCCCCHHH----HhCCCCCCEEECCC--CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCC
Confidence            555666654433332221    23689999999999  68888765 578999999999999999988764 78999999


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +|++++|. +..++   +..++.+++|++|++++|.++..      ..+++|++|++++|+++.   -.|..+..+..+
T Consensus       128 ~L~Ls~N~-l~~l~---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~l~~L~~l  199 (635)
T 4g8a_A          128 KLVAVETN-LASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS---IYCTDLRVLHQM  199 (635)
T ss_dssp             EEECTTSC-CCCST---TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE---ECGGGGHHHHTC
T ss_pred             EEECCCCc-CCCCC---hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc---cccccccchhhh
Confidence            99999997 77765   23468999999999999998754      678999999999999986   234456666554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.41  E-value=1.1e-12  Score=102.38  Aligned_cols=122  Identities=19%  Similarity=0.198  Sum_probs=72.0

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF   99 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~   99 (188)
                      ..+..++++++.-..+..     + ..+++|++|++++  +.+..++. +..+++|++|++++|++..++. +..+++|+
T Consensus        63 ~~L~~L~L~~n~i~~~~~-----~-~~l~~L~~L~L~~--n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~  132 (308)
T 1h6u_A           63 NNLIGLELKDNQITDLAP-----L-KNLTKITELELSG--NPLKNVSA-IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQ  132 (308)
T ss_dssp             TTCCEEECCSSCCCCCGG-----G-TTCCSCCEEECCS--CCCSCCGG-GTTCTTCCEEECTTSCCCCCGG-GTTCTTCC
T ss_pred             CCCCEEEccCCcCCCChh-----H-ccCCCCCEEEccC--CcCCCchh-hcCCCCCCEEECCCCCCCCchh-hcCCCCCC
Confidence            445555555544333322     1 2567777777777  45655553 4667777777777777766653 66677777


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      +|++++|. +..++    . +..+++|+.|++++|.+++.   ..+++|+.|++++|.++.
T Consensus       133 ~L~l~~n~-l~~~~----~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          133 VLYLDLNQ-ITNIS----P-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             EEECCSSC-CCCCG----G-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC
T ss_pred             EEECCCCc-cCcCc----c-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc
Confidence            77777765 44332    1 45556666666666665554   455556666666665554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.41  E-value=1.8e-12  Score=97.07  Aligned_cols=125  Identities=19%  Similarity=0.166  Sum_probs=99.7

Q ss_pred             EEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCc
Q 047302           22 IGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLF   99 (188)
Q Consensus        22 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~   99 (188)
                      +..+++.+..-..+...   . ...+++|++|++++  +.+..++. .+..+++|++|++++|++..+|+. +..+++|+
T Consensus        42 L~~L~Ls~n~i~~~~~~---~-~~~l~~L~~L~L~~--N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~  115 (229)
T 3e6j_A           42 AQILYLHDNQITKLEPG---V-FDSLINLKELYLGS--NQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK  115 (229)
T ss_dssp             CSEEECCSSCCCCCCTT---T-TTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCEEEcCCCccCccCHH---H-hhCccCCcEEECCC--CCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhC
Confidence            45555555443333211   1 12689999999999  68888774 458899999999999999988765 68899999


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      +|++++|. +..+    |..+..+++|+.|++++|.++.+     ..+++|+.|++++|.+..
T Consensus       116 ~L~Ls~N~-l~~l----p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          116 ELFMCCNK-LTEL----PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             EEECCSSC-CCSC----CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             eEeccCCc-cccc----CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            99999997 7766    45568999999999999998876     678899999999999885

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.41  E-value=2.4e-13  Score=115.84  Aligned_cols=115  Identities=13%  Similarity=0.128  Sum_probs=88.4

Q ss_pred             cccccccCCCCccEEeecCccCcc------------------cchhhh--cCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           64 NLERFWGSMKSLTMLILDGTAIRE------------------LPLSVE--YLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        64 ~l~~~~~~l~~L~~L~l~~~~i~~------------------lp~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+|..+.++++|++|++++|.+..                  +|..++  .+++|++|++++|.-...+    |..++.+
T Consensus       197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~----p~~l~~l  272 (636)
T 4eco_A          197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL----PTFLKAL  272 (636)
T ss_dssp             EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC----CTTTTTC
T ss_pred             cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC----hHHHhcC
Confidence            367778889999999999999886                  888888  8999999999998733333    5667889


Q ss_pred             CcccEEEccCCc-ccc--c----CCC------CCCCEeccCCCCCCCCCCCCCh--hhHHHhhh---------hh-cCCC
Q 047302          124 DSLEELDISGTA-IRQ--L----SRL------CSLTKWDLSDCNLPVEGGEIPR--DICYLCLL---------FK-DEPE  178 (188)
Q Consensus       124 ~~L~~L~l~~~~-i~~--~----~~l------~~L~~L~l~~~~l~~~~~~lp~--~l~~l~~L---------~~-~lp~  178 (188)
                      ++|++|++++|. +++  +    +.+      ++|++|++++|+++.    +|.  .++.+++|         +. .+| 
T Consensus       273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~----ip~~~~l~~l~~L~~L~L~~N~l~g~ip-  347 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT----FPVETSLQKMKKLGMLECLYNQLEGKLP-  347 (636)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS----CCCHHHHTTCTTCCEEECCSCCCEEECC-
T ss_pred             CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc----cCchhhhccCCCCCEEeCcCCcCccchh-
Confidence            999999999997 765  2    333      889999999998887    887  77777666         33 677 


Q ss_pred             Cchhhhccc
Q 047302          179 SNSQIRRNV  187 (188)
Q Consensus       179 ~~~~l~~L~  187 (188)
                      .+..+++|+
T Consensus       348 ~~~~l~~L~  356 (636)
T 4eco_A          348 AFGSEIKLA  356 (636)
T ss_dssp             CCEEEEEES
T ss_pred             hhCCCCCCC
Confidence            566655554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.40  E-value=1.4e-13  Score=106.84  Aligned_cols=135  Identities=18%  Similarity=0.092  Sum_probs=93.6

Q ss_pred             ccceecEEEEcccccccccc---cccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL---ERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l---~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      .+++|++|++++  +.+..+   +..+..+++|++|++++|.+..+|..+..+++|++|++++|. +..++.  +..+..
T Consensus        50 ~l~~L~~L~L~~--n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~--~~~~~~  124 (306)
T 2z66_A           50 KLTQLTKLSLSS--NGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSE--FSVFLS  124 (306)
T ss_dssp             TCTTCSEEECCS--SCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTT--TTTTTT
T ss_pred             ccccCCEEECCC--CccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-cccccc--chhhhh
Confidence            577888888887  565443   445566788888888888888887778888888888888886 555532  124577


Q ss_pred             CCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcC-CCCchhhhccc
Q 047302          123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDE-PESNSQIRRNV  187 (188)
Q Consensus       123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~l-p~~~~~l~~L~  187 (188)
                      +++|++|++++|.+...     ..+++|++|++++|.+..  ..+|..+..+++|         +..+ |.++..+++|+
T Consensus       125 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  202 (306)
T 2z66_A          125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ  202 (306)
T ss_dssp             CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG--GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc--ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence            88888888888887654     567888999998887763  2345555555544         3333 55555555553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.40  E-value=1.4e-12  Score=108.74  Aligned_cols=103  Identities=19%  Similarity=0.260  Sum_probs=57.3

Q ss_pred             ccceecEEEEccccccccccc---ccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE---RFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~---~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      .+++|++|++++  +.++.++   ..+..+++|++|++++|++..+|..+..+++|++|++++|. +..++..+      
T Consensus       359 ~l~~L~~L~Ls~--N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~------  429 (549)
T 2z81_A          359 AWPSLQTLVLSQ--NHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCI------  429 (549)
T ss_dssp             SSTTCCEEECTT--SCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTTS------
T ss_pred             ccccCcEEEccC--CcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccchh------
Confidence            455666666665  3444443   23455666666666666666666555556666666666665 44443222      


Q ss_pred             CCcccEEEccCCccccc-CCCCCCCEeccCCCCCCC
Q 047302          123 VDSLEELDISGTAIRQL-SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       123 l~~L~~L~l~~~~i~~~-~~l~~L~~L~l~~~~l~~  157 (188)
                      .++|+.|++++|.+++. ..+++|+.|++++|+++.
T Consensus       430 ~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~  465 (549)
T 2z81_A          430 PQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKT  465 (549)
T ss_dssp             CTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSS
T ss_pred             cCCceEEECCCCChhhhcccCChhcEEECCCCccCc
Confidence            13445555555554444 456667777777776665

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.39  E-value=1.7e-12  Score=94.76  Aligned_cols=105  Identities=21%  Similarity=0.311  Sum_probs=90.3

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ..++++|++++  +.+..+|..+..+++|++|++++|.+..+++ .+..+++|++|++++|. +..++   |..+..+++
T Consensus        30 ~~~l~~L~L~~--n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~---~~~f~~l~~  103 (193)
T 2wfh_A           30 PRDVTELYLDG--NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIP---PRTFDGLKS  103 (193)
T ss_dssp             CTTCCEEECCS--SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCC---TTTTTTCTT
T ss_pred             CCCCCEEECCC--CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeC---HHHhCCCCC
Confidence            35799999999  7888898888999999999999999997764 58899999999999997 77665   345688999


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.|++++|.++.+     ..+++|+.|++++|.+.-
T Consensus       104 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A          104 LRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99999999998876     578899999999998764

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.39  E-value=3.8e-13  Score=105.25  Aligned_cols=88  Identities=15%  Similarity=0.106  Sum_probs=54.4

Q ss_pred             hhcCCCCcEEEccCCCCCccCCCcccccc-CCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhH
Q 047302           92 VEYLTGLFVLNFKDWQNLECLPSPISENL-GKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDIC  167 (188)
Q Consensus        92 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l-~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~  167 (188)
                      +..+++|++|++++|. +...+   +..+ ..+++|++|++++|.+++.   ..+++|+.|++++|.++.    +|..+.
T Consensus       140 ~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~----l~~~~~  211 (317)
T 3o53_A          140 EGCRSRVQYLDLKLNE-IDTVN---FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF----MGPEFQ  211 (317)
T ss_dssp             TGGGSSEEEEECTTSC-CCEEE---GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCE----ECGGGG
T ss_pred             hhccCCCCEEECCCCC-CCccc---HHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCc----chhhhc
Confidence            4445555555555554 33221   2222 3466777777777776665   456778888888888876    777776


Q ss_pred             HHhhh---------hhcCCCCchhhhccc
Q 047302          168 YLCLL---------FKDEPESNSQIRRNV  187 (188)
Q Consensus       168 ~l~~L---------~~~lp~~~~~l~~L~  187 (188)
                      .+++|         +..+|..+..+++|+
T Consensus       212 ~l~~L~~L~L~~N~l~~l~~~~~~l~~L~  240 (317)
T 3o53_A          212 SAAGVTWISLRNNKLVLIEKALRFSQNLE  240 (317)
T ss_dssp             GGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred             ccCcccEEECcCCcccchhhHhhcCCCCC
Confidence            66666         556777666666554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.39  E-value=2.1e-12  Score=96.05  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=96.3

Q ss_pred             cceecEEEEccccccccccc--ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLE--RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      ...+++|++++  +.+..++  ..+..+++|++|++++|++..+++ .+..+++|++|++++|. +..++   +..+..+
T Consensus        31 ~~~~~~L~L~~--N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l  104 (220)
T 2v70_A           31 PQYTAELRLNN--NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQ---HKMFKGL  104 (220)
T ss_dssp             CTTCSEEECCS--SCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCC---GGGGTTC
T ss_pred             CCCCCEEEcCC--CcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccC---HhHhcCC
Confidence            34678999999  6887774  346899999999999999998765 68999999999999997 76664   3457889


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCC-ChhhHHHhhh
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEI-PRDICYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~l-p~~l~~l~~L  172 (188)
                      ++|+.|++++|.++..     ..+++|+.|++++|.++.    + |..+..+++|
T Consensus       105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L  155 (220)
T 2v70_A          105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT----VAPGAFDTLHSL  155 (220)
T ss_dssp             SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC----BCTTTTTTCTTC
T ss_pred             cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCE----ECHHHhcCCCCC
Confidence            9999999999998876     678899999999999986    5 5566666555

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.38  E-value=8.3e-13  Score=109.28  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             ccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccC-CCCcccEEEccCCccccc---CCCCCCCEec
Q 047302           75 LTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLG-KVDSLEELDISGTAIRQL---SRLCSLTKWD  149 (188)
Q Consensus        75 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~-~l~~L~~L~l~~~~i~~~---~~l~~L~~L~  149 (188)
                      |+.|++++|.+..+ |..++.+++|++|++++|. +...+   |..+. .+++|+.|++++|.+++.   ..+++|+.|+
T Consensus       122 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  197 (487)
T 3oja_A          122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE-IDTVN---FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD  197 (487)
T ss_dssp             CEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSC-CCEEE---GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred             CCEEECCCCCCCCCCchhhcCCCCCCEEECCCCC-CCCcC---hHHHhhhCCcccEEecCCCccccccccccCCCCCEEE
Confidence            33334444444322 2234555666666666654 33221   33333 567777777777777665   4577888888


Q ss_pred             cCCCCCCCCCCCCChhhHHHhhh---------hhcCCCCchhhhccc
Q 047302          150 LSDCNLPVEGGEIPRDICYLCLL---------FKDEPESNSQIRRNV  187 (188)
Q Consensus       150 l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~~~~l~~L~  187 (188)
                      +++|.++.    +|+.+..++.|         +..+|.++..+++|+
T Consensus       198 Ls~N~l~~----~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~  240 (487)
T 3oja_A          198 LSSNKLAF----MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE  240 (487)
T ss_dssp             CCSSCCCE----ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred             CCCCCCCC----CCHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence            88888887    77777776666         556777776666553

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=4.7e-12  Score=90.57  Aligned_cols=112  Identities=26%  Similarity=0.274  Sum_probs=90.7

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE  127 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~  127 (188)
                      +.+.+++++  +.++.+|..+  .+++++|++++|++..+ |..+..+++|++|++++|. +..++   +..+..+++|+
T Consensus        10 ~~~~l~~s~--n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~---~~~f~~l~~L~   81 (170)
T 3g39_A           10 SGTTVDCSG--KSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLP---AGVFDKLTQLT   81 (170)
T ss_dssp             ETTEEECTT--SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC---TTTTTTCTTCC
T ss_pred             CCCEEEeCC--CCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccC---hhhccCCCCCC
Confidence            457889998  7888888754  37899999999999977 5568899999999999997 77765   23457899999


Q ss_pred             EEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          128 ELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       128 ~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      .|++++|.++.+     ..+++|+.|++++|.+.-    .+..+.++...
T Consensus        82 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c----~c~~l~~l~~~  127 (170)
T 3g39_A           82 QLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC----ACSDILYLSRW  127 (170)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT----TBGGGHHHHHH
T ss_pred             EEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC----CchhHHHHHHH
Confidence            999999998876     578899999999999886    45545554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.38  E-value=7.8e-13  Score=94.97  Aligned_cols=100  Identities=16%  Similarity=0.180  Sum_probs=48.4

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhh-hcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSV-EYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE  127 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~  127 (188)
                      +|++|++++  +.+..+ ..+..+++|++|++++|.+..+|+.+ ..+++|++|++++|. +..++.  ...+..+++|+
T Consensus        43 ~L~~L~Ls~--N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~--~~~l~~l~~L~  116 (176)
T 1a9n_A           43 QFDAIDFSD--NEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGD--LDPLASLKSLT  116 (176)
T ss_dssp             CCSEEECCS--SCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGG--GGGGGGCTTCC
T ss_pred             CCCEEECCC--CCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchh--hHhhhcCCCCC
Confidence            555555555  344444 23345555555555555555544332 455555555555554 333321  01334455555


Q ss_pred             EEEccCCccccc--------CCCCCCCEeccCCCC
Q 047302          128 ELDISGTAIRQL--------SRLCSLTKWDLSDCN  154 (188)
Q Consensus       128 ~L~l~~~~i~~~--------~~l~~L~~L~l~~~~  154 (188)
                      .|++++|.+...        ..+++|+.|+++.|.
T Consensus       117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A          117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            555555554433        344555555555554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.37  E-value=3.2e-12  Score=93.98  Aligned_cols=116  Identities=26%  Similarity=0.376  Sum_probs=95.5

Q ss_pred             cceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+++++|++++  +.+..++. .+..+++|++|++++|++..+|+. +..+++|++|++++|. +..++   +..+..++
T Consensus        27 ~~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~---~~~~~~l~  100 (208)
T 2o6s_A           27 PAQTTYLDLET--NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLP---NGVFDKLT  100 (208)
T ss_dssp             CTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTCT
T ss_pred             CCCCcEEEcCC--CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccC---HhHhcCcc
Confidence            56899999999  67777664 468899999999999999988765 6889999999999997 77664   23468899


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      +|++|++++|.++.+     ..+++|++|++++|.++.    +|.. +..+++|
T Consensus       101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L  150 (208)
T 2o6s_A          101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS----VPDGVFDRLTSL  150 (208)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred             CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce----eCHHHhccCCCc
Confidence            999999999998876     578899999999999986    6654 4555555

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=6.1e-12  Score=90.36  Aligned_cols=110  Identities=25%  Similarity=0.288  Sum_probs=91.0

Q ss_pred             cEEEEcccccccccccccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEE
Q 047302           51 GTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEEL  129 (188)
Q Consensus        51 ~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L  129 (188)
                      +.+++++  +.++.+|..+.  .++++|++++|++..+ |..+..+++|++|++++|. +..++.   ..+..+++|+.|
T Consensus        15 ~~l~~~~--n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~---~~~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQN--IRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPT---GVFDKLTQLTQL   86 (174)
T ss_dssp             SEEECCS--SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCTTCCEE
T ss_pred             cEEEeCC--CCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccCh---hHhCCcchhhEE
Confidence            5788888  78888887543  7899999999999977 5568899999999999997 777652   235789999999


Q ss_pred             EccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          130 DISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       130 ~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      ++++|.++.+     ..+++|+.|++++|.+..    .+..+.++...
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c----~~~~~~~l~~~  130 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC----ECRDIMYLRNW  130 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT----TBGGGHHHHHH
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCccc----ccccHHHHHHH
Confidence            9999998876     578899999999999987    67666666655

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.37  E-value=3.6e-12  Score=93.04  Aligned_cols=110  Identities=21%  Similarity=0.287  Sum_probs=92.4

Q ss_pred             cEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEE
Q 047302           51 GTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD  130 (188)
Q Consensus        51 ~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~  130 (188)
                      +.+++++  +.++.+|..+  ..++++|++++|++..+|..+..+++|+.|++++|. +..++   +..+..+++|+.|+
T Consensus        13 ~~l~~~~--~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~---~~~f~~l~~L~~L~   84 (193)
T 2wfh_A           13 TVVRCSN--KGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLS---NQSFSNMTQLLTLI   84 (193)
T ss_dssp             TEEECTT--SCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCC---TTTTTTCTTCCEEE
T ss_pred             CEEEcCC--CCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeC---HhHccCCCCCCEEE
Confidence            5678888  7888888654  368999999999999999899999999999999997 77664   34578999999999


Q ss_pred             ccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          131 ISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       131 l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      +++|.++.+     ..+++|+.|++++|.++.    +|.. +..+++|
T Consensus        85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L  128 (193)
T 2wfh_A           85 LSYNRLRCIPPRTFDGLKSLRLLSLHGNDISV----VPEGAFNDLSAL  128 (193)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECCSSCCCB----CCTTTTTTCTTC
T ss_pred             CCCCccCEeCHHHhCCCCCCCEEECCCCCCCe----eChhhhhcCccc
Confidence            999999887     678999999999999997    6664 4555544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.37  E-value=1.9e-12  Score=94.57  Aligned_cols=115  Identities=16%  Similarity=0.176  Sum_probs=92.5

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcc-cchhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRE-LPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+++|++|++++  +.+..++ .+..+++|++|++++|++.. .|..+..+++|++|++++|. +..   ..|..++.++
T Consensus        64 ~l~~L~~L~l~~--n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-i~~---~~~~~l~~l~  136 (197)
T 4ezg_A           64 YAHNIKDLTINN--IHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA-HDD---SILTKINTLP  136 (197)
T ss_dssp             GCTTCSEEEEES--CCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSB-CBG---GGHHHHTTCS
T ss_pred             cCCCCCEEEccC--CCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCc-cCc---HhHHHHhhCC
Confidence            588999999999  5666665 45889999999999999984 67788999999999999987 443   1256678899


Q ss_pred             cccEEEccCCc-cccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          125 SLEELDISGTA-IRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       125 ~L~~L~l~~~~-i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +|+.|++++|. ++++   ..+++|+.|++++|.+++    ++ .+..+++|
T Consensus       137 ~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~----~~-~l~~l~~L  183 (197)
T 4ezg_A          137 KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD----YR-GIEDFPKL  183 (197)
T ss_dssp             SCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC----CT-TGGGCSSC
T ss_pred             CCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC----hH-HhccCCCC
Confidence            99999999997 7766   788899999999999887    55 55554444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.37  E-value=4.1e-12  Score=101.86  Aligned_cols=60  Identities=13%  Similarity=0.155  Sum_probs=33.0

Q ss_pred             ccceecEEEEccccccccccccc-ccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERF-WGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~  107 (188)
                      .+++|++|++++  +.+..+|.. +..+++|++|++++|++..+++ .+..+++|++|++++|.
T Consensus       115 ~l~~L~~L~L~~--n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          115 NVPLLTVLVLER--NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             TCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCC--CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc
Confidence            455666666666  455555543 3555666666666666554432 35555555555555553

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.36  E-value=2.3e-12  Score=111.97  Aligned_cols=118  Identities=25%  Similarity=0.186  Sum_probs=55.5

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      +++|++|++++| .....+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|. +.   ..+|..++.+++
T Consensus       393 ~~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~---~~~p~~~~~l~~  467 (768)
T 3rgz_A          393 KNTLQELYLQNN-GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LE---GEIPQELMYVKT  467 (768)
T ss_dssp             TCCCCEEECCSS-EEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CC---SCCCGGGGGCTT
T ss_pred             cCCccEEECCCC-ccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-cc---CcCCHHHcCCCC
Confidence            344555555553 222244444555555555555555554 445555555555555555554 22   111333344555


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      |+.|++++|.+++.     ..+++|+.|++++|.+.   +.+|..++.+++|
T Consensus       468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~---~~~p~~~~~l~~L  516 (768)
T 3rgz_A          468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT---GEIPKWIGRLENL  516 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC---SCCCGGGGGCTTC
T ss_pred             ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC---CcCChHHhcCCCC
Confidence            55555555544422     34444555555555444   2244444444433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.36  E-value=1.2e-12  Score=105.00  Aligned_cols=59  Identities=19%  Similarity=0.302  Sum_probs=27.0

Q ss_pred             cceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~  107 (188)
                      +++|++|++++  +.+..++ ..+..+++|++|++++|++..+|.. +..+++|++|++++|.
T Consensus        92 l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~  152 (390)
T 3o6n_A           92 AHTIQKLYMGF--NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  152 (390)
T ss_dssp             CTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcCEEECCC--CCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc
Confidence            44455555554  2333332 2334445555555555555444433 2444555555555443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.36  E-value=3.3e-12  Score=93.05  Aligned_cols=104  Identities=14%  Similarity=0.262  Sum_probs=89.9

Q ss_pred             ceecEEEEcccccccccccc--cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           48 TSVGTSIVGNCYKRIANLER--FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~--~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .++++|++++  +.+..++.  .+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++   +..+..++
T Consensus        29 ~~l~~L~l~~--n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~  102 (192)
T 1w8a_A           29 LHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEIS---NKMFLGLH  102 (192)
T ss_dssp             TTCSEEECCS--CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEEC---SSSSTTCT
T ss_pred             CCCCEEECCC--CcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccC---HHHhcCCC
Confidence            3899999999  68877775  378999999999999999976 6679999999999999997 76664   34468899


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      +|+.|++++|.++..     ..+++|+.|++++|.+.-
T Consensus       103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            999999999998876     678899999999999884

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.36  E-value=2.2e-12  Score=108.81  Aligned_cols=133  Identities=17%  Similarity=0.175  Sum_probs=106.7

Q ss_pred             cceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+++++|++++  +.+..++. .+.++++|++|++++|.+..+ |..+..+++|++|++++|. +..++   |..++.++
T Consensus        31 ~~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~---p~~~~~l~  104 (606)
T 3vq2_A           31 PSSTKNIDLSF--NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP-IQSFS---PGSFSGLT  104 (606)
T ss_dssp             CTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCCCC---TTSSTTCT
T ss_pred             CCCcCEEECCC--CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc-ccccC---hhhcCCcc
Confidence            36899999999  67766654 778999999999999999877 5568899999999999997 66553   45678999


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhc-CCCCchhhhccc
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKD-EPESNSQIRRNV  187 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~-lp~~~~~l~~L~  187 (188)
                      +|++|++++|.+++.     +.+++|++|++++|.+..  ..+|..++++++|         +.. .|..+..+.+|+
T Consensus       105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  180 (606)
T 3vq2_A          105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS--CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP  180 (606)
T ss_dssp             TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCC--CCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred             cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccc--eechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence            999999999988765     788899999999999885  4588888888777         333 355677776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.36  E-value=3.2e-12  Score=105.97  Aligned_cols=132  Identities=17%  Similarity=0.193  Sum_probs=103.6

Q ss_pred             ccceecEEEEccccccccc-ccccccCCCCccEEeecCccCcc---cchhhhcCCCCcEEEccCCCCCcc-CCCcccccc
Q 047302           46 YGTSVGTSIVGNCYKRIAN-LERFWGSMKSLTMLILDGTAIRE---LPLSVEYLTGLFVLNFKDWQNLEC-LPSPISENL  120 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~l  120 (188)
                      .+++|++|++++  +.+.. .|..+..+++|++|++++|++..   +|..+..+++|++|++++|. +.. +|.   ..+
T Consensus       322 ~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~---~~~  395 (520)
T 2z7x_B          322 KISPFLHLDFSN--NLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK---GDC  395 (520)
T ss_dssp             SCCCCCEEECCS--SCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG---CSC
T ss_pred             hCCcccEEEeEC--CccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCccccc---chh
Confidence            678999999999  45544 67777899999999999999985   45668899999999999997 554 431   235


Q ss_pred             CCCCcccEEEccCCccccc--CCC-CCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCC-chhhhccc
Q 047302          121 GKVDSLEELDISGTAIRQL--SRL-CSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPES-NSQIRRNV  187 (188)
Q Consensus       121 ~~l~~L~~L~l~~~~i~~~--~~l-~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~-~~~l~~L~  187 (188)
                      ..+++|+.|++++|.+++.  ..+ ++|+.|++++|+++.    +|..+..+++|         +..+|.. +..+++|+
T Consensus       396 ~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~----ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  471 (520)
T 2z7x_B          396 SWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKS----IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ  471 (520)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCC----CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccc----cchhhhcCCCCCEEECCCCcCCccCHHHhccCCccc
Confidence            7788999999999988654  344 689999999999887    88887777776         6677876 66666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.36  E-value=2.2e-12  Score=109.37  Aligned_cols=102  Identities=24%  Similarity=0.372  Sum_probs=55.5

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|+.|++++  +.+..++. +..+++|+.|++++|.+..+| .+..+++|+.|++++|. +..+     +.+..+++
T Consensus        63 ~l~~L~~L~Ls~--N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~  132 (605)
T 1m9s_A           63 YLPNVTKLFLNG--NKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDI-----NGLVHLPQ  132 (605)
T ss_dssp             GCTTCCEEECTT--SCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCC-----GGGGGCTT
T ss_pred             cCCCCCEEEeeC--CCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCC-----ccccCCCc
Confidence            456666666666  35555444 455666666666666665554 45556666666666654 3332     12344555


Q ss_pred             ccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.|++++|.++++   ..+++|+.|+|++|.+..
T Consensus       133 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~  167 (605)
T 1m9s_A          133 LESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD  167 (605)
T ss_dssp             CSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCC
T ss_pred             cCEEECCCCccCCchhhcccCCCCEEECcCCcCCC
Confidence            55555555554443   444455555555555443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.36  E-value=1.8e-12  Score=106.54  Aligned_cols=117  Identities=20%  Similarity=0.282  Sum_probs=84.2

Q ss_pred             ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..+ |..+.++++|++|++++|++..+|.. +..+++|++|++++|. +..++   |..+..+
T Consensus        54 ~l~~L~~L~L~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~---~~~~~~l  127 (477)
T 2id5_A           54 SFPHLEELELNE--NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILL---DYMFQDL  127 (477)
T ss_dssp             TCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEEC---TTTTTTC
T ss_pred             CCCCCCEEECCC--CccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCC---hhHcccc
Confidence            578888888888  566554 56677888888888888888877654 5778888888888886 54442   3445777


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      ++|+.|++++|.+...     ..+++|+.|++++|.++.    +|.. +..+++|
T Consensus       128 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L  178 (477)
T 2id5_A          128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS----IPTEALSHLHGL  178 (477)
T ss_dssp             TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS----CCHHHHTTCTTC
T ss_pred             ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc----cChhHhcccCCC
Confidence            8888888888877654     567778888888887776    5543 4444444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.36  E-value=5.2e-13  Score=105.82  Aligned_cols=86  Identities=22%  Similarity=0.280  Sum_probs=36.8

Q ss_pred             cceecEEEEccccccccccccc-ccCCCCccEEeecCccCcccch--hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLERF-WGSMKSLTMLILDGTAIRELPL--SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~-~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      +++|++|++++  +.+..++.. +..+++|++|++++|++..+|.  .+..+++|++|++++|..+..++   +..+..+
T Consensus        99 l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~l  173 (353)
T 2z80_A           99 LGSLEHLDLSY--NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ---RKDFAGL  173 (353)
T ss_dssp             CTTCCEEECCS--SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC---TTTTTTC
T ss_pred             CCCCCEEECCC--CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC---HHHccCC
Confidence            44444444444  334333322 3444444444444444444443  34444444444444442122221   1223444


Q ss_pred             CcccEEEccCCccc
Q 047302          124 DSLEELDISGTAIR  137 (188)
Q Consensus       124 ~~L~~L~l~~~~i~  137 (188)
                      ++|+.|++++|.++
T Consensus       174 ~~L~~L~l~~n~l~  187 (353)
T 2z80_A          174 TFLEELEIDASDLQ  187 (353)
T ss_dssp             CEEEEEEEEETTCC
T ss_pred             CCCCEEECCCCCcC
Confidence            45555555554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=3.5e-13  Score=118.37  Aligned_cols=116  Identities=22%  Similarity=0.255  Sum_probs=81.1

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCcc-Cc--ccchhhhcCC-------CCcEEEccCCCCCccCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTA-IR--ELPLSVEYLT-------GLFVLNFKDWQNLECLPSP  115 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~-i~--~lp~~~~~l~-------~L~~L~l~~~~~l~~l~~~  115 (188)
                      .+++|+.|++++| .....+|..+.++++|+.|++++|+ +.  .+|..++.+.       +|+.|++++|. +..+   
T Consensus       489 ~L~~L~~L~Ls~N-~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~i---  563 (876)
T 4ecn_A          489 NLKDLTDVELYNC-PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEF---  563 (876)
T ss_dssp             GCTTCCEEEEESC-TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBC---
T ss_pred             cCCCCCEEECcCC-CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCcc---
Confidence            5777888888875 5567777777778888888888886 65  3676666555       78888887776 5544   


Q ss_pred             ccc--ccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302          116 ISE--NLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL  171 (188)
Q Consensus       116 ~~~--~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~  171 (188)
                       |.  .++.+++|+.|++++|.++.+   +.+++|+.|++++|.+..    +|..+..++.
T Consensus       564 -p~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~----lp~~l~~l~~  619 (876)
T 4ecn_A          564 -PASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE----IPEDFCAFTD  619 (876)
T ss_dssp             -CCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSC----CCTTSCEECT
T ss_pred             -CChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCcccc----chHHHhhccc
Confidence             44  457777777777777776654   566677777777777765    6666555554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.35  E-value=3e-12  Score=99.18  Aligned_cols=112  Identities=20%  Similarity=0.259  Sum_probs=95.4

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|+.+++++  +.+..++. +..+++|++|++++|++..+++ +..+++|++|++++|. +..+     ..+..+++
T Consensus        44 ~l~~L~~L~l~~--~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~-----~~l~~l~~  113 (291)
T 1h6t_A           44 ELNSIDQIIANN--SDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDL-----SSLKDLKK  113 (291)
T ss_dssp             HHHTCCEEECTT--SCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCG-----GGGTTCTT
T ss_pred             hcCcccEEEccC--CCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCC-----hhhccCCC
Confidence            578899999999  57777765 5889999999999999998886 9999999999999997 6654     34689999


Q ss_pred             ccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      |+.|++++|.++++   ..+++|+.|++++|.++.    + ..+..+++|
T Consensus       114 L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~----~-~~l~~l~~L  158 (291)
T 1h6t_A          114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD----I-TVLSRLTKL  158 (291)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC----C-GGGGGCTTC
T ss_pred             CCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCc----c-hhhccCCCC
Confidence            99999999998876   788999999999999987    4 455555555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.35  E-value=2.9e-12  Score=98.11  Aligned_cols=116  Identities=18%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             eecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcc
Q 047302           49 SVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSL  126 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L  126 (188)
                      ++++|++++  +.+..++. .+.++++|++|++++|++..+++ .+..+++|++|++++|. +..++   +..+..+++|
T Consensus        29 ~l~~L~ls~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~L  102 (276)
T 2z62_A           29 STKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA---LGAFSGLSSL  102 (276)
T ss_dssp             TCCEEECTT--CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC---TTTTTTCTTC
T ss_pred             CccEEECCC--CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccC---hhhhcCCccc
Confidence            455555555  34444432 34455555555555555554432 34555555555555554 33332   2233455555


Q ss_pred             cEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          127 EELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       127 ~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +.|++++|.+...     ..+++|++|++++|.++.  ..+|..+..+++|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~l~~~~~~l~~L  151 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNL  151 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTC
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccce--ecCchhhccCCCC
Confidence            5555555554443     344555555555555543  2344444444444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.35  E-value=4.9e-12  Score=106.96  Aligned_cols=85  Identities=15%  Similarity=0.073  Sum_probs=47.3

Q ss_pred             CceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccccccccc-ccCCCCccEEeecCccCcccch-hhhc
Q 047302           17 NDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERF-WGSMKSLTMLILDGTAIRELPL-SVEY   94 (188)
Q Consensus        17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~   94 (188)
                      .+...|..++++++.-..+....    ...+++|++|++++  +.+..+|.. +..+++|++|++++|.+..+++ .+..
T Consensus        96 ~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~--n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  169 (597)
T 3oja_B           96 AYAHTIQKLYMGFNAIRYLPPHV----FQNVPLLTVLVLER--NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA  169 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTT----TTTCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             cCCCCCCEEECCCCcCCCCCHHH----HcCCCCCCEEEeeC--CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc
Confidence            34445555566554433332211    12466677777776  455555543 3666667777777776665433 4566


Q ss_pred             CCCCcEEEccCCC
Q 047302           95 LTGLFVLNFKDWQ  107 (188)
Q Consensus        95 l~~L~~L~l~~~~  107 (188)
                      +++|++|++++|.
T Consensus       170 l~~L~~L~L~~N~  182 (597)
T 3oja_B          170 TTSLQNLQLSSNR  182 (597)
T ss_dssp             CTTCCEEECTTSC
T ss_pred             CCcCcEEECcCCC
Confidence            6666666666654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.35  E-value=3.5e-12  Score=100.22  Aligned_cols=57  Identities=12%  Similarity=0.149  Sum_probs=25.4

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~  107 (188)
                      +++|++|++++  +.+..+|..+.  ++|++|++++|++..+|+ .+..+++|+.|++++|.
T Consensus       101 l~~L~~L~L~~--n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          101 LRKLQKLYISK--NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CTTCCEEECCS--SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC
T ss_pred             cCCCCEEECCC--CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc
Confidence            44444444444  33333333211  344444444444444432 24555555555555554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.35  E-value=5.2e-13  Score=100.26  Aligned_cols=107  Identities=13%  Similarity=0.143  Sum_probs=59.9

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchhhhcCCCCc---EEEccCCCCCccCCCccccccC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF---VLNFKDWQNLECLPSPISENLG  121 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~---~L~l~~~~~l~~l~~~~~~~l~  121 (188)
                      .+++|++|++++| +.++.++ ..+..+++|++|++++|++..+|. +..+++|+   ++++++|..+..++   +..+.
T Consensus        78 ~l~~L~~L~l~~~-n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~---~~~~~  152 (239)
T 2xwt_C           78 NLSKVTHIEIRNT-RNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP---VNAFQ  152 (239)
T ss_dssp             SCTTCCEEEEEEE-TTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC---TTTTT
T ss_pred             CCcCCcEEECCCC-CCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC---ccccc
Confidence            4556666666654 4555544 234555666666666666655553 55555555   66666652244443   12245


Q ss_pred             CCCccc-EEEccCCccccc----CCCCCCCEeccCCCC-CCC
Q 047302          122 KVDSLE-ELDISGTAIRQL----SRLCSLTKWDLSDCN-LPV  157 (188)
Q Consensus       122 ~l~~L~-~L~l~~~~i~~~----~~l~~L~~L~l~~~~-l~~  157 (188)
                      .+++|+ .+++++|.++.+    ...++|+.|++++|. ++.
T Consensus       153 ~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~  194 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTV  194 (239)
T ss_dssp             TTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCE
T ss_pred             chhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCccc
Confidence            666777 777777766654    122567777777773 664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.34  E-value=1.6e-12  Score=109.94  Aligned_cols=60  Identities=20%  Similarity=0.340  Sum_probs=33.7

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~  107 (188)
                      .+++|++|++++  +.+..++ ..+..+++|++|++++|.+..+|+. ++.+++|++|++++|.
T Consensus        97 ~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~  158 (597)
T 3oja_B           97 YAHTIQKLYMGF--NAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN  158 (597)
T ss_dssp             TCTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCC--CcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc
Confidence            455666666665  3444443 3345566666666666666655544 3556666666666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.34  E-value=6e-13  Score=103.91  Aligned_cols=60  Identities=15%  Similarity=0.188  Sum_probs=28.8

Q ss_pred             ccceecEEEEcccccccccccccccCC-----CCccEEeecCccCcccc-hhhhcCCCCcEEEccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSM-----KSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l-----~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~  107 (188)
                      .+++|++|++++  +.+..+|..+..+     ++|++|++++|++..++ ..++.+++|++|++++|.
T Consensus       119 ~l~~L~~L~Ls~--N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          119 TGPDLNILNLRN--VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             CSCCCSEEEEES--CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             cCCCccEEEccC--CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence            345555555555  3443334333333     45555555555554433 344455555555555543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.34  E-value=1.6e-13  Score=116.90  Aligned_cols=116  Identities=16%  Similarity=0.234  Sum_probs=73.8

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCcc-Cc--ccchhhhcC------CCCcEEEccCCCCCccCCCcc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTA-IR--ELPLSVEYL------TGLFVLNFKDWQNLECLPSPI  116 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~~l~~l~~~~  116 (188)
                      .+++|++|++++| .....+|..+.++++|++|++++|+ +.  .+|..++.+      ++|++|++++|. +..+    
T Consensus       247 ~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~i----  320 (636)
T 4eco_A          247 NLKDLTDVEVYNC-PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTF----  320 (636)
T ss_dssp             GCTTCCEEEEECC-TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSC----
T ss_pred             ccCCCCEEEecCC-cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCcc----
Confidence            4677778888775 4456677777777778888887776 65  367666665      777777777776 5544    


Q ss_pred             cc--ccCCCCcccEEEccCCccc-cc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302          117 SE--NLGKVDSLEELDISGTAIR-QL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL  171 (188)
Q Consensus       117 ~~--~l~~l~~L~~L~l~~~~i~-~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~  171 (188)
                      |.  .++.+++|+.|++++|.++ .+   ..+++|+.|++++|.++.    +|..+..++.
T Consensus       321 p~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~  377 (636)
T 4eco_A          321 PVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITE----IPANFCGFTE  377 (636)
T ss_dssp             CCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEE----CCTTSEEECT
T ss_pred             CchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCcccc----ccHhhhhhcc
Confidence            34  4567777777777777666 22   344455555555555444    4444444333

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.34  E-value=4.2e-12  Score=96.96  Aligned_cols=111  Identities=22%  Similarity=0.184  Sum_probs=87.5

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|++|++++  +.+..++ .+..+++|++|++++|++..+++ +..+++|++|++++|. +..++.     +.. ++
T Consensus        39 ~l~~L~~L~l~~--n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-----~~~-~~  107 (263)
T 1xeu_A           39 ELSGVQNFNGDN--SNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-----IPS-AC  107 (263)
T ss_dssp             HHTTCSEEECTT--SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-----CCC-SS
T ss_pred             hcCcCcEEECcC--CCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-----ccc-Cc
Confidence            477888999988  5777777 45788899999999999888876 8888999999999887 666532     123 88


Q ss_pred             ccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      |+.|++++|.+++.   ..+++|+.|++++|.++.    ++ .+..+++|
T Consensus       108 L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~----~~-~l~~l~~L  152 (263)
T 1xeu_A          108 LSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS----IV-MLGFLSKL  152 (263)
T ss_dssp             CCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB----CG-GGGGCTTC
T ss_pred             ccEEEccCCccCCChhhcCcccccEEECCCCcCCC----Ch-HHccCCCC
Confidence            89999999988776   778889999999998887    54 55555555

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.34  E-value=3.8e-12  Score=101.34  Aligned_cols=106  Identities=18%  Similarity=0.211  Sum_probs=77.5

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|+.|++++  +.+..++ ..+..+++|++|++++|++..+++ .+..+++|+.|++++|. +..++   |..+..+
T Consensus        62 ~l~~L~~L~L~~--N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~---~~~~~~l  135 (361)
T 2xot_A           62 RLTNLHSLLLSH--NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVD---RNAFEDM  135 (361)
T ss_dssp             CCTTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC---TTTTTTC
T ss_pred             cccccCEEECCC--CcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEEC---HHHhCCc
Confidence            577888888887  5676665 456777888888888888876654 46778888888888876 55543   3445778


Q ss_pred             CcccEEEccCCccccc--------CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL--------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|+.|++++|.++.+        ..+++|+.|++++|.++.
T Consensus       136 ~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~  177 (361)
T 2xot_A          136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK  177 (361)
T ss_dssp             TTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred             ccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence            8888888888887765        246788888888888876

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=4.7e-12  Score=103.22  Aligned_cols=105  Identities=22%  Similarity=0.296  Sum_probs=58.8

Q ss_pred             cceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      +++|+.|++++| +.+..++. .+.++++|++|++++|++..+| .+..+++|+.|++++|. +..++   |..+..+++
T Consensus       159 l~~L~~L~l~~~-~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~  232 (440)
T 3zyj_A          159 IPSLRRLDLGEL-KRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNH-LSAIR---PGSFQGLMH  232 (440)
T ss_dssp             CTTCCEEECCCC-TTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSC-CCEEC---TTTTTTCTT
T ss_pred             CcccCEeCCCCC-CCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCc-cCccC---hhhhccCcc
Confidence            444444444444 44444332 3455555666666666655555 35555666666666664 44332   334466666


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.|++++|.++..     ..+++|+.|++++|+++.
T Consensus       233 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  269 (440)
T 3zyj_A          233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL  269 (440)
T ss_dssp             CCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred             CCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence            66666666666554     456667777777776665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.33  E-value=3.9e-12  Score=92.67  Aligned_cols=112  Identities=19%  Similarity=0.231  Sum_probs=91.3

Q ss_pred             ecEEEEcccccccccccccccCCCCccEEeecCccCcccchh--hhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302           50 VGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLS--VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE  127 (188)
Q Consensus        50 L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~  127 (188)
                      -+.+++++  +.++.+|..+.  .++++|++++|++..+++.  +..+++|++|++++|. +..++   |..+..+++|+
T Consensus        10 ~~~l~~s~--~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~L~   81 (192)
T 1w8a_A           10 GTTVDCTG--RGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIE---PNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTT--SCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBC---TTTTTTCTTCC
T ss_pred             CCEEEcCC--CCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcC---HhHcCCcccCC
Confidence            36889998  78888987543  3899999999999988764  8999999999999997 66553   45678999999


Q ss_pred             EEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          128 ELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       128 ~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      .|++++|.++..     ..+++|++|++++|+++.   ..|..+..+++|
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L  128 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC---VMPGSFEHLNSL  128 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE---ECTTSSTTCTTC
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCe---eCHHHhhcCCCC
Confidence            999999999886     678999999999999985   235555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.33  E-value=1.3e-11  Score=88.47  Aligned_cols=115  Identities=25%  Similarity=0.343  Sum_probs=93.6

Q ss_pred             cceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .++|+.|++++  +.+..++. .+..+++|++|++++|++..+|+. +..+++|++|++++|. +..++   +..+..++
T Consensus        27 ~~~l~~L~l~~--n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~---~~~~~~l~  100 (177)
T 2o6r_A           27 PSSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLP---NGVFDKLT  100 (177)
T ss_dssp             CTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCC---TTTTTTCT
T ss_pred             CCCCcEEEeCC--CcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccC---HHHhhCCc
Confidence            46899999999  67777764 458899999999999999988765 6889999999999997 77664   23467899


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL  171 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~  171 (188)
                      +|+.|++++|.++.+     ..+++|+.|++++|.+..    .+..+..+..
T Consensus       101 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----~~~~l~~l~~  148 (177)
T 2o6r_A          101 QLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC----SCPRIDYLSR  148 (177)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC----CHHHHHHHHH
T ss_pred             ccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec----cCccHHHHHH
Confidence            999999999998876     568899999999999885    4444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=5.5e-12  Score=106.20  Aligned_cols=106  Identities=22%  Similarity=0.174  Sum_probs=87.9

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE  128 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~  128 (188)
                      .|+.|++++  +.+..+|. +..+++|+.|++++|.+..+|..++.+++|+.|++++|. +..+    | .++.+++|+.
T Consensus       442 ~L~~L~Ls~--n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~l----p-~l~~l~~L~~  512 (567)
T 1dce_A          442 DVRVLHLAH--KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENV----D-GVANLPRLQE  512 (567)
T ss_dssp             TCSEEECTT--SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCC----G-GGTTCSSCCE
T ss_pred             CceEEEecC--CCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCC----c-ccCCCCCCcE
Confidence            578899998  68888887 788999999999999999899889999999999999987 6655    4 5688899999


Q ss_pred             EEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhH
Q 047302          129 LDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDIC  167 (188)
Q Consensus       129 L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~  167 (188)
                      |++++|.+++.      ..+++|+.|++++|.++.    +|+...
T Consensus       513 L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~----~~~~~~  553 (567)
T 1dce_A          513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ----EEGIQE  553 (567)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG----SSSCTT
T ss_pred             EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC----CccHHH
Confidence            99999987654      578889999999998887    555433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.32  E-value=6.4e-12  Score=104.99  Aligned_cols=106  Identities=25%  Similarity=0.313  Sum_probs=63.8

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..++ ..+.++++|++|++++|.+..+| ..+..+++|++|++++|. +..++.   ..++.+
T Consensus        50 ~l~~L~~L~Ls~--n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~---~~~~~l  123 (570)
T 2z63_A           50 SFPELQVLDLSR--CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLEN---FPIGHL  123 (570)
T ss_dssp             TCSSCCEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTT---CSCTTC
T ss_pred             CCCCceEEECCC--CcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc-cccCCC---cccccc
Confidence            466666666666  3454443 34566666666666666666554 346666666666666665 444431   124666


Q ss_pred             CcccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|++|++++|.++..      ..+++|++|++++|.++.
T Consensus       124 ~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~  163 (570)
T 2z63_A          124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS  163 (570)
T ss_dssp             TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred             ccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence            6667777766665541      456667777777666664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.31  E-value=8.5e-12  Score=97.87  Aligned_cols=62  Identities=8%  Similarity=0.034  Sum_probs=27.5

Q ss_pred             CceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCc
Q 047302           17 NDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR   86 (188)
Q Consensus        17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~   86 (188)
                      .++..+..+++.++.-..+..   ..+ ..+++|++|++++  +.++.+|..+.  ++|++|++++|.+.
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~---~~~-~~l~~L~~L~Ls~--n~l~~l~~~~~--~~L~~L~l~~n~l~  134 (330)
T 1xku_A           73 KNLKNLHTLILINNKISKISP---GAF-APLVKLERLYLSK--NQLKELPEKMP--KTLQELRVHENEIT  134 (330)
T ss_dssp             TTCTTCCEEECCSSCCCCBCT---TTT-TTCTTCCEEECCS--SCCSBCCSSCC--TTCCEEECCSSCCC
T ss_pred             ccCCCCCEEECCCCcCCeeCH---HHh-cCCCCCCEEECCC--CcCCccChhhc--ccccEEECCCCccc
Confidence            344455555555543332211   111 1456666666666  44544443221  34444444444443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.30  E-value=8.4e-12  Score=104.64  Aligned_cols=132  Identities=17%  Similarity=0.193  Sum_probs=101.5

Q ss_pred             ccceecEEEEccccccccc-ccccccCCCCccEEeecCccCcccc---hhhhcCCCCcEEEccCCCCCcc-CCCcccccc
Q 047302           46 YGTSVGTSIVGNCYKRIAN-LERFWGSMKSLTMLILDGTAIRELP---LSVEYLTGLFVLNFKDWQNLEC-LPSPISENL  120 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~-l~~~~~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~l  120 (188)
                      .+++|++|++++  +.+.. .|..+..+++|++|++++|++..++   ..+..+++|+.|++++|. +.. ++.   ..+
T Consensus       351 ~l~~L~~L~l~~--n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~---~~~  424 (562)
T 3a79_B          351 SPSSFTFLNFTQ--NVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYD---RTC  424 (562)
T ss_dssp             SCCCCCEEECCS--SCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSS---CCC
T ss_pred             CCCCceEEECCC--CccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-CCCccCh---hhh
Confidence            578999999998  45544 6777788999999999999988654   457889999999999997 554 532   235


Q ss_pred             CCCCcccEEEccCCccccc--CCC-CCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCCCC-chhhhccc
Q 047302          121 GKVDSLEELDISGTAIRQL--SRL-CSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEPES-NSQIRRNV  187 (188)
Q Consensus       121 ~~l~~L~~L~l~~~~i~~~--~~l-~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp~~-~~~l~~L~  187 (188)
                      ..+++|+.|++++|.+++.  ..+ ++|+.|++++|.++.    +|..+..+++|         +..+|.. +..+++|+
T Consensus       425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~----ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~  500 (562)
T 3a79_B          425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMS----IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQ  500 (562)
T ss_dssp             CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCC----CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCC
T ss_pred             cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcc----cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCC
Confidence            6788899999999988654  455 589999999998887    88877666665         6677776 66666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.30  E-value=8.6e-12  Score=101.98  Aligned_cols=83  Identities=22%  Similarity=0.318  Sum_probs=43.8

Q ss_pred             cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCC
Q 047302           70 GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCS  144 (188)
Q Consensus        70 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~  144 (188)
                      ..+++|++|++++|++..+| .+..+++|+.|++++|. +..++   |..+..+++|+.|++++|.++..     ..+++
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  267 (452)
T 3zyi_A          193 EGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNH-FPEIR---PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS  267 (452)
T ss_dssp             TTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSC-CSEEC---GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             cCCCCCCEEECCCCcccccc-cccccccccEEECcCCc-CcccC---cccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence            44455555555555554444 34445555555555554 33322   33445556666666666655544     45556


Q ss_pred             CCEeccCCCCCCC
Q 047302          145 LTKWDLSDCNLPV  157 (188)
Q Consensus       145 L~~L~l~~~~l~~  157 (188)
                      |+.|++++|+++.
T Consensus       268 L~~L~L~~N~l~~  280 (452)
T 3zyi_A          268 LVELNLAHNNLSS  280 (452)
T ss_dssp             CCEEECCSSCCSC
T ss_pred             CCEEECCCCcCCc
Confidence            6666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.30  E-value=1e-11  Score=98.93  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=95.1

Q ss_pred             cceecEEEEcccccccccccc-ccc-CCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLER-FWG-SMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~-~~~-~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      ...++.|++++  +.+..++. .+. .+.+|++|++++|++..+++ .+..+++|++|++++|. +..++   +..+..+
T Consensus        38 ~~~l~~L~Ls~--N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l  111 (361)
T 2xot_A           38 PSYTALLDLSH--NNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLD---EFLFSDL  111 (361)
T ss_dssp             CTTCSEEECCS--SCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC---TTTTTTC
T ss_pred             CCCCCEEECCC--CCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCC---HHHhCCC
Confidence            34689999999  78877765 344 89999999999999998864 58999999999999997 77664   3346889


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhh----HHHhhh
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDI----CYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l----~~l~~L  172 (188)
                      ++|+.|++++|.++..     ..+++|+.|++++|.++.    +|..+    ..+++|
T Consensus       112 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~----l~~~~~~~~~~l~~L  165 (361)
T 2xot_A          112 QALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR----FPVELIKDGNKLPKL  165 (361)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS----CCGGGTC----CTTC
T ss_pred             cCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe----eCHHHhcCcccCCcC
Confidence            9999999999998876     688999999999999998    77764    345554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.30  E-value=8.6e-12  Score=97.82  Aligned_cols=48  Identities=19%  Similarity=0.255  Sum_probs=22.9

Q ss_pred             cCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302          120 LGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL  171 (188)
Q Consensus       120 l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~  171 (188)
                      +..+++|+.|++++|.+++.     ..+++|+.|++++|.++.    +|..+..++.
T Consensus       212 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----lp~~l~~l~~  264 (330)
T 1xku_A          212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK----VPGGLADHKY  264 (330)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS----CCTTTTTCSS
T ss_pred             hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc----CChhhccCCC
Confidence            44455555555555544433     344455555555555544    4444443333

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.29  E-value=9.7e-12  Score=97.98  Aligned_cols=80  Identities=20%  Similarity=0.299  Sum_probs=43.7

Q ss_pred             cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCC
Q 047302           70 GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLT  146 (188)
Q Consensus        70 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~  146 (188)
                      ..+++|++|++++|++..+++ +..+++|++|++++|. +..+     +.+..+++|+.|++++|.+++.   ..+++|+
T Consensus       218 ~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~-----~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~  290 (347)
T 4fmz_A          218 ANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISDI-----NAVKDLTKLKMLNVGSNQISDISVLNNLSQLN  290 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCC-----GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred             hcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCCC-----hhHhcCCCcCEEEccCCccCCChhhcCCCCCC
Confidence            445555555555555555443 5555555555555554 3332     2245556666666666655554   4555666


Q ss_pred             EeccCCCCCC
Q 047302          147 KWDLSDCNLP  156 (188)
Q Consensus       147 ~L~l~~~~l~  156 (188)
                      .|++++|.+.
T Consensus       291 ~L~L~~n~l~  300 (347)
T 4fmz_A          291 SLFLNNNQLG  300 (347)
T ss_dssp             EEECCSSCCC
T ss_pred             EEECcCCcCC
Confidence            6666666655

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.29  E-value=1e-11  Score=97.59  Aligned_cols=87  Identities=15%  Similarity=0.232  Sum_probs=45.7

Q ss_pred             ceecEEEEccccccccccc-ccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCcc---------
Q 047302           48 TSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPI---------  116 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~---------  116 (188)
                      +++++|++++  +.+..++ ..+.++++|++|++++|++..+ |..+..+++|++|++++|. +..+|..+         
T Consensus        54 ~~l~~L~l~~--n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQN--NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRI  130 (332)
T ss_dssp             TTCCEEECCS--SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEEC
T ss_pred             CCCeEEECCC--CcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEEC
Confidence            3555555555  3444432 3445555555555555555543 3345555555555555554 44333221         


Q ss_pred             ---------ccccCCCCcccEEEccCCccc
Q 047302          117 ---------SENLGKVDSLEELDISGTAIR  137 (188)
Q Consensus       117 ---------~~~l~~l~~L~~L~l~~~~i~  137 (188)
                               +..+..+++|+.|++++|.++
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCccc
Confidence                     223566777777777777664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.29  E-value=5.4e-12  Score=87.97  Aligned_cols=122  Identities=19%  Similarity=0.121  Sum_probs=94.3

Q ss_pred             eeEEEecCCCCChh--hHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcc-cchhhhcCC
Q 047302           20 RMIGICDMGGIGKV--ALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRE-LPLSVEYLT   96 (188)
Q Consensus        20 ~~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~   96 (188)
                      ..+..+++.+++-.  .++    ..+ ..+++|++|++++  +.+..+ ..+..+++|++|++++|.+.. +|..+..++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~----~~~-~~l~~L~~L~l~~--n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLE----GLT-DEFEELEFLSTIN--VGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCC----SCC-TTCTTCCEEECTT--SCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred             ccCeEEEccCCcCChhHHH----HHH-hhcCCCcEEECcC--CCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence            45566666665433  222    111 3689999999999  577766 566889999999999999986 787778899


Q ss_pred             CCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--------CCCCCCCEeccCC
Q 047302           97 GLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--------SRLCSLTKWDLSD  152 (188)
Q Consensus        97 ~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~  152 (188)
                      +|++|++++|. +..++  .+..++.+++|+.|++++|.+++.        ..+++|+.|++++
T Consensus        89 ~L~~L~ls~N~-i~~~~--~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           89 NLTHLNLSGNK-IKDLS--TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TCCEEECTTSC-CCSHH--HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCEEECCCCc-CCChH--HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999999997 65542  125678899999999999998765        5688999998864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.28  E-value=2.6e-12  Score=112.91  Aligned_cols=135  Identities=13%  Similarity=0.077  Sum_probs=105.5

Q ss_pred             ccceecEEEEccccccccc------------------cccccc--CCCCccEEeecCccCc-ccchhhhcCCCCcEEEcc
Q 047302           46 YGTSVGTSIVGNCYKRIAN------------------LERFWG--SMKSLTMLILDGTAIR-ELPLSVEYLTGLFVLNFK  104 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~------------------l~~~~~--~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~  104 (188)
                      .+++|+.|++++  +.+..                  +|..+.  ++++|++|++++|.+. .+|..++.+++|+.|+++
T Consensus       446 ~L~~L~~L~Ls~--N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls  523 (876)
T 4ecn_A          446 RLTKLQIIYFAN--SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA  523 (876)
T ss_dssp             GCTTCCEEEEES--CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred             cCCCCCEEECcC--CcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence            689999999999  56755                  888777  9999999999999865 889899999999999999


Q ss_pred             CCCCCc--cCCCccc---cccCCCCcccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh-
Q 047302          105 DWQNLE--CLPSPIS---ENLGKVDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL-  172 (188)
Q Consensus       105 ~~~~l~--~l~~~~~---~~l~~l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L-  172 (188)
                      +|..+.  .+|..+.   ..+..+++|+.|++++|.++.+      ..+++|+.|++++|.+..    +| .++.+++| 
T Consensus       524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~----lp-~~~~L~~L~  598 (876)
T 4ecn_A          524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH----LE-AFGTNVKLT  598 (876)
T ss_dssp             TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB----CC-CCCTTSEES
T ss_pred             CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc----ch-hhcCCCcce
Confidence            985233  2322210   1223455999999999988754      578899999999999987    77 66666666 


Q ss_pred             --------hhcCCCCchhhhc-cc
Q 047302          173 --------FKDEPESNSQIRR-NV  187 (188)
Q Consensus       173 --------~~~lp~~~~~l~~-L~  187 (188)
                              +..+|+++..+.+ |+
T Consensus       599 ~L~Ls~N~l~~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          599 DLKLDYNQIEEIPEDFCAFTDQVE  622 (876)
T ss_dssp             EEECCSSCCSCCCTTSCEECTTCC
T ss_pred             EEECcCCccccchHHHhhccccCC
Confidence                    5678888877776 64

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.28  E-value=1.3e-11  Score=96.24  Aligned_cols=106  Identities=16%  Similarity=0.126  Sum_probs=82.4

Q ss_pred             ccceecEEEEcccccccc-cccccc--cCCCCccEEeecCccCcccchhhhcC-----CCCcEEEccCCCCCccCCCccc
Q 047302           46 YGTSVGTSIVGNCYKRIA-NLERFW--GSMKSLTMLILDGTAIRELPLSVEYL-----TGLFVLNFKDWQNLECLPSPIS  117 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~-~l~~~~--~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~~l~~l~~~~~  117 (188)
                      .+++|++|++++  +.+. .+|..+  ..+++|++|++++|++..+|..+..+     ++|++|++++|. +..++   |
T Consensus        93 ~l~~L~~L~L~~--n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~---~  166 (312)
T 1wwl_A           93 GISGLQELTLEN--LEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS---C  166 (312)
T ss_dssp             TTSCCCEEEEEE--EBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC---T
T ss_pred             CcCCccEEEccC--CcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch---H
Confidence            478999999999  4664 677655  88999999999999999778777777     999999999997 66654   3


Q ss_pred             cccCCCCcccEEEccCCcccc-------c--CCCCCCCEeccCCCCCCC
Q 047302          118 ENLGKVDSLEELDISGTAIRQ-------L--SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       118 ~~l~~l~~L~~L~l~~~~i~~-------~--~~l~~L~~L~l~~~~l~~  157 (188)
                      ..++.+++|++|++++|.+.+       .  ..+++|+.|++++|.++.
T Consensus       167 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~  215 (312)
T 1wwl_A          167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET  215 (312)
T ss_dssp             TTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC
T ss_pred             HHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc
Confidence            456777888888888887432       1  566677777777776663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.28  E-value=9.7e-12  Score=89.19  Aligned_cols=116  Identities=15%  Similarity=0.092  Sum_probs=95.1

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+.+|+.|++++  +.+..++......++|++|++++|.+..+ ..+..+++|++|++++|. +..++.   ..+..+++
T Consensus        17 ~~~~L~~L~l~~--n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~---~~~~~l~~   89 (176)
T 1a9n_A           17 NAVRDRELDLRG--YKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGE---GLDQALPD   89 (176)
T ss_dssp             CTTSCEEEECTT--SCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECS---CHHHHCTT
T ss_pred             CcCCceEEEeeC--CCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCc---chhhcCCC
Confidence            688999999999  67877876434344999999999999987 478899999999999997 766642   22478899


Q ss_pred             ccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChh----hHHHhhh
Q 047302          126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRD----ICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~----l~~l~~L  172 (188)
                      |+.|++++|.++++      ..+++|+.|++++|.+..    +|..    +..++.|
T Consensus        90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~----~~~~~~~~~~~l~~L  142 (176)
T 1a9n_A           90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN----KKHYRLYVIYKVPQV  142 (176)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG----STTHHHHHHHHCTTC
T ss_pred             CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCC----cHhHHHHHHHHCCcc
Confidence            99999999988765      578899999999999987    7775    6666665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.27  E-value=5.2e-12  Score=100.03  Aligned_cols=105  Identities=18%  Similarity=0.251  Sum_probs=46.7

Q ss_pred             cceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      +++|++|++++  +.+..++ ..+.++++|++|++++|++..+|.. +..+++|++|++++|. +..++.  ...+..++
T Consensus        75 l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~--~~~~~~l~  149 (353)
T 2z80_A           75 CVNLQALVLTS--NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGE--TSLFSHLT  149 (353)
T ss_dssp             CTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCS--SCSCTTCT
T ss_pred             CCCCCEEECCC--CccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCc--hhhhccCC
Confidence            44455555554  3333332 2344445555555555555444433 4445555555555543 333321  01234445


Q ss_pred             cccEEEccCCc-cccc-----CCCCCCCEeccCCCCCC
Q 047302          125 SLEELDISGTA-IRQL-----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       125 ~L~~L~l~~~~-i~~~-----~~l~~L~~L~l~~~~l~  156 (188)
                      +|+.|++++|. +...     ..+++|+.|++++|.+.
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            55555555442 2222     34444555555555444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.27  E-value=2.7e-11  Score=95.44  Aligned_cols=107  Identities=16%  Similarity=0.252  Sum_probs=55.7

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCC-----------
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPS-----------  114 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~-----------  114 (188)
                      .+++|++|++++  +.+..++. +..+++|++|++++|.+..+| .+..+++|++|++++|. +..++.           
T Consensus        64 ~~~~L~~L~l~~--n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~  138 (347)
T 4fmz_A           64 YLTNLEYLNLNG--NQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLN  138 (347)
T ss_dssp             GCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEE
T ss_pred             hcCCccEEEccC--Cccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEE
Confidence            355666666666  34544444 455566666666666555554 45555556666655554 333211           


Q ss_pred             -------ccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          115 -------PISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       115 -------~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                             ..+..+..+++|+.|++++|.+.+.   ..+++|+.|++++|.+..
T Consensus       139 l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          139 LGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             CTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC
T ss_pred             CCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc
Confidence                   0012234455555555555554443   455556666666665554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.26  E-value=9.8e-12  Score=103.58  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=90.5

Q ss_pred             ccceecEEEEcccccccc-ccc---ccccCCCCccEEeecCccCcccch---hhhcCCCCcEEEccCCCCCccCCCcccc
Q 047302           46 YGTSVGTSIVGNCYKRIA-NLE---RFWGSMKSLTMLILDGTAIRELPL---SVEYLTGLFVLNFKDWQNLECLPSPISE  118 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~-~l~---~~~~~l~~L~~L~l~~~~i~~lp~---~~~~l~~L~~L~l~~~~~l~~l~~~~~~  118 (188)
                      .+++|++|++++|  .+. .+|   ..+..+++|++|++++|++..++.   .+..+++|++|++++|. +..+    |.
T Consensus       332 ~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l----p~  404 (549)
T 2z81_A          332 HLKSLEFLDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPM----PD  404 (549)
T ss_dssp             HCTTCCEEECCSS--CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCC----CS
T ss_pred             cCccccEEEccCC--ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccC----Ch
Confidence            4789999999994  553 333   235788999999999999987763   47889999999999997 7766    45


Q ss_pred             ccCCCCcccEEEccCCccccc-CC-CCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          119 NLGKVDSLEELDISGTAIRQL-SR-LCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       119 ~l~~l~~L~~L~l~~~~i~~~-~~-l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      .++.+++|++|++++|.++.+ .. .++|++|++++|+++.    ++..+..|..|
T Consensus       405 ~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~----~~~~l~~L~~L  456 (549)
T 2z81_A          405 SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDS----FSLFLPRLQEL  456 (549)
T ss_dssp             CCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSC----CCCCCTTCCEE
T ss_pred             hhcccccccEEECCCCCcccccchhcCCceEEECCCCChhh----hcccCChhcEE
Confidence            568889999999999999877 22 3589999999999886    44444444444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.26  E-value=2.7e-11  Score=98.73  Aligned_cols=106  Identities=19%  Similarity=0.214  Sum_probs=63.0

Q ss_pred             ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..+ |..+..+++|++|++++|.+..+ |..+..+++|++|++++|. +..++   |..+..+
T Consensus       297 ~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l  370 (455)
T 3v47_A          297 HFTDLEQLTLAQ--NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALG---DQSFLGL  370 (455)
T ss_dssp             TCTTCCEEECTT--SCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC-CCEEC---TTTTTTC
T ss_pred             cCCCCCEEECCC--CcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc-ccccC---hhhcccc
Confidence            456666666666  344433 34555666666666666666644 3445666666666666665 43332   3344666


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|++|++++|.++++     ..+++|+.|++++|+++.
T Consensus       371 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          371 PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence            6666666666666554     455666667777666663

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.26  E-value=7.7e-12  Score=102.70  Aligned_cols=131  Identities=17%  Similarity=0.143  Sum_probs=90.4

Q ss_pred             CceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhc
Q 047302           17 NDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEY   94 (188)
Q Consensus        17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~   94 (188)
                      .++..+..+++.+..-..+..   .. ...+++|++|++++  +.+..+|. .+.++++|++|++++|.+..+ |..+..
T Consensus        53 ~~l~~L~~L~L~~n~i~~~~~---~~-~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~  126 (477)
T 2id5_A           53 ASFPHLEELELNENIVSAVEP---GA-FNNLFNLRTLGLRS--NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD  126 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECT---TT-TTTCTTCCEEECCS--SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred             cCCCCCCEEECCCCccCEeCh---hh-hhCCccCCEEECCC--CcCCccCcccccCCCCCCEEECCCCccccCChhHccc
Confidence            334445555555543322211   11 12688999999998  57777764 457888999999999988755 556788


Q ss_pred             CCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302           95 LTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus        95 l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      +++|++|++++|. +..++   +..+..+++|+.|++++|.+++.     ..+++|+.|++++|.+..
T Consensus       127 l~~L~~L~l~~n~-l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          127 LYNLKSLEVGDND-LVYIS---HRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             CTTCCEEEECCTT-CCEEC---TTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             cccCCEEECCCCc-cceeC---hhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence            8899999998886 55443   34457778888888888877665     567777777777776664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.26  E-value=3e-11  Score=103.22  Aligned_cols=106  Identities=19%  Similarity=0.230  Sum_probs=80.3

Q ss_pred             ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..+ |..+.++++|++|++++|.+..+|+ .+..+++|++|++++|. +..++   |..++.+
T Consensus        47 ~l~~L~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l  120 (680)
T 1ziw_A           47 RYSQLTSLDVGF--NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIK---NNPFVKQ  120 (680)
T ss_dssp             GGTTCSEEECCS--SCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC---SCTTTTC
T ss_pred             CCCcCcEEECCC--CccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccC---hhHcccc
Confidence            577888888888  455444 5566778888888888888887776 47888888888888886 55553   3446788


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|++|++++|.++..     ..+++|++|++++|.++.
T Consensus       121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  159 (680)
T 1ziw_A          121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA  159 (680)
T ss_dssp             TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred             CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence            8888888888877654     567788888888888775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.25  E-value=1.3e-11  Score=104.06  Aligned_cols=106  Identities=15%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..+ |..+.++++|++|++++|++..+ |..++.+++|++|++++|. +..++   |..++.+
T Consensus        55 ~l~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~l~---~~~~~~l  128 (606)
T 3t6q_A           55 RLINLTFLDLTR--CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-ISSID---FIPLHNQ  128 (606)
T ss_dssp             TCTTCSEEECTT--CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC-CSCGG---GSCCTTC
T ss_pred             cCccceEEECCC--CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC-cccCC---cchhccC
Confidence            567777777777  344443 45567777777777777777644 5566777777777777775 44432   2335677


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      ++|++|++++|.+++.     ..+++|++|++++|.++.
T Consensus       129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  167 (606)
T 3t6q_A          129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY  167 (606)
T ss_dssp             TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred             CcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence            7777777777776653     346677777777777764

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.25  E-value=3.3e-11  Score=101.57  Aligned_cols=127  Identities=17%  Similarity=0.130  Sum_probs=76.9

Q ss_pred             eEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCccc-chhhhcCCCCc
Q 047302           21 MIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLF   99 (188)
Q Consensus        21 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~   99 (188)
                      .+..+++.+..-..+....    ...+++|++|++++  +.+..+|..+..+++|++|++++|.+..+ |..+..+++|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~l~~--n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  328 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNT----FHCFSGLQELDLTA--THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT  328 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTT----TTTCTTCSEEECTT--SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCS
T ss_pred             ceeEEEeecCccCccCHHH----hccccCCCEEeccC--CccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCC
Confidence            4555555554433332211    12578888999988  57778888778888889999988888765 44677888888


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-------CCCCCCCEeccCCCCCC
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-------SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-------~~l~~L~~L~l~~~~l~  156 (188)
                      +|++++|.....++.   ..+..+++|+.|++++|.+.+.       ..+++|++|++++|.+.
T Consensus       329 ~L~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  389 (606)
T 3t6q_A          329 HLSIKGNTKRLELGT---GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL  389 (606)
T ss_dssp             EEECCSCSSCCBCCS---STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred             EEECCCCCcccccch---hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence            888888752213321   1234555555555555544332       34444444444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.24  E-value=4.9e-12  Score=94.91  Aligned_cols=109  Identities=17%  Similarity=0.212  Sum_probs=88.3

Q ss_pred             ccceecEEEEcccccccccccc-cccCCCCccEEeecC-ccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDG-TAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      .+++|+++++++| ..++.++. .+.++++|++|++++ |++..+|+ .+..+++|++|++++|. +..+|    . +..
T Consensus        53 ~l~~L~~L~l~~n-~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp----~-~~~  125 (239)
T 2xwt_C           53 NLPNISRIYVSID-VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFP----D-LTK  125 (239)
T ss_dssp             TCTTCCEEEEECC-SSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCC----C-CTT
T ss_pred             CCCCCcEEeCCCC-CCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Ccccc----c-ccc
Confidence            6889999999994 33777764 668899999999998 89988764 57889999999999987 66664    3 567


Q ss_pred             CCccc---EEEccCC-ccccc-----CCCCCCC-EeccCCCCCCCCCCCCChh
Q 047302          123 VDSLE---ELDISGT-AIRQL-----SRLCSLT-KWDLSDCNLPVEGGEIPRD  165 (188)
Q Consensus       123 l~~L~---~L~l~~~-~i~~~-----~~l~~L~-~L~l~~~~l~~~~~~lp~~  165 (188)
                      +++|+   .|++++| .++.+     ..+++|+ .|++++|.++.    +|..
T Consensus       126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~----i~~~  174 (239)
T 2xwt_C          126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS----VQGY  174 (239)
T ss_dssp             CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE----ECTT
T ss_pred             ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc----cCHh
Confidence            77777   9999999 88765     6788899 99999999886    6654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.24  E-value=1.3e-11  Score=104.57  Aligned_cols=112  Identities=20%  Similarity=0.262  Sum_probs=95.1

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+.+|+.|++++  +.+..++. +..+++|+.|++++|++..+++ +..+++|+.|++++|. +..+     ..+..+++
T Consensus        41 ~L~~L~~L~l~~--n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l-----~~l~~l~~  110 (605)
T 1m9s_A           41 ELNSIDQIIANN--SDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDL-----SSLKDLKK  110 (605)
T ss_dssp             HHTTCCCCBCTT--CCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCC-----TTSTTCTT
T ss_pred             cCCCCCEEECcC--CCCCCChH-HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCC-----hhhccCCC
Confidence            578899999999  57877774 5889999999999999998886 8999999999999997 6654     24688999


Q ss_pred             ccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      |+.|++++|.++++   ..+++|+.|++++|.+..    + ..+..++.|
T Consensus       111 L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~----l-~~l~~l~~L  155 (605)
T 1m9s_A          111 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD----I-TVLSRLTKL  155 (605)
T ss_dssp             CCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCC----C-GGGGSCTTC
T ss_pred             CCEEEecCCCCCCCccccCCCccCEEECCCCccCC----c-hhhcccCCC
Confidence            99999999998876   788999999999999987    4 455555555

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.24  E-value=3e-11  Score=98.39  Aligned_cols=115  Identities=28%  Similarity=0.312  Sum_probs=93.0

Q ss_pred             ceecEEEEccccccc-ccccccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           48 TSVGTSIVGNCYKRI-ANLERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i-~~l~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ++|+.+++++|  .+ ...|..+..+++|++|++++|++..+ |..+..+++|++|++++|. +..++   |..++.+++
T Consensus       275 ~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~---~~~~~~l~~  348 (455)
T 3v47_A          275 SGVKTCDLSKS--KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSID---SRMFENLDK  348 (455)
T ss_dssp             SCCCEEECCSS--CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC---GGGGTTCTT
T ss_pred             cCceEEEecCc--cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc-cCCcC---hhHhcCccc
Confidence            57889999984  55 44566778899999999999999866 5578899999999999997 65553   456788999


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      |+.|++++|.+++.     ..+++|++|++++|+++.    +|.. +..+++|
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L  397 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS----VPDGIFDRLTSL  397 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCcccc----CCHhHhccCCcc
Confidence            99999999998776     678899999999999987    6654 3555555

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.24  E-value=3e-11  Score=100.89  Aligned_cols=117  Identities=18%  Similarity=0.166  Sum_probs=90.4

Q ss_pred             ceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           48 TSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ++++.|++++  +.++.++ ..+.++++|++|++++|++..++ ..+..+++|++|++++|. +..++   |..++.+++
T Consensus        28 ~~l~~L~Ls~--n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~  101 (570)
T 2z63_A           28 FSTKNLDLSF--NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLA---LGAFSGLSS  101 (570)
T ss_dssp             SSCCEEECCS--CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEEC---TTTTTTCTT
T ss_pred             ccccEEEccC--CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc-CCccC---HhhhcCccc
Confidence            4688889988  5676654 46688888999999998888764 457888899999998886 65554   345688888


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      |++|++++|.++.+     +.+++|++|++++|.+..  ..+|..++++++|
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--~~lp~~~~~l~~L  151 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS--FKLPEYFSNLTNL  151 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCC--CCCCGGGGGCTTC
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccce--ecChhhhcccCCC
Confidence            99999988887765     677888999999888875  3467777777766

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.23  E-value=1.4e-11  Score=96.33  Aligned_cols=117  Identities=12%  Similarity=0.066  Sum_probs=71.8

Q ss_pred             ccceecEEEEcccccccccc-cccc-cCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFW-GSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~-~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++|++++  +.+..+ +..+ ..+++|++|++++|.+..+|. ...+++|+.|++++|. +..+    |..+..+
T Consensus       142 ~l~~L~~L~Ls~--N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~l----~~~~~~l  213 (317)
T 3o53_A          142 CRSRVQYLDLKL--NEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFM----GPEFQSA  213 (317)
T ss_dssp             GGSSEEEEECTT--SCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEE----CGGGGGG
T ss_pred             ccCCCCEEECCC--CCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCc-CCcc----hhhhccc
Confidence            456677777776  455443 2222 356677777777777766642 3346777777777775 5544    3335667


Q ss_pred             CcccEEEccCCccccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          124 DSLEELDISGTAIRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      ++|+.|++++|.++.+    ..+++|+.|++++|.+..  +.+|..+..++.+
T Consensus       214 ~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~--~~~~~~~~~~~~L  264 (317)
T 3o53_A          214 AGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHC--GTLRDFFSKNQRV  264 (317)
T ss_dssp             TTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBH--HHHHHHHHTCHHH
T ss_pred             CcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccC--cCHHHHHhccccc
Confidence            7777777777777665    566677777777777763  2245554444433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.22  E-value=2.3e-11  Score=106.69  Aligned_cols=117  Identities=21%  Similarity=0.236  Sum_probs=83.9

Q ss_pred             ccceecEEEEcccccccccc-cccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCcc-CCCccccccCC
Q 047302           46 YGTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLEC-LPSPISENLGK  122 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~l~~  122 (188)
                      .+++|++|++++| ..+..+ |..+.++++|++|++++|.+..+ |..+..+++|++|++++|. +.. .+..  ..++.
T Consensus        46 ~l~~L~~LdLs~n-~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~--~~~~~  121 (844)
T 3j0a_A           46 FLEQLQLLELGSQ-YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKD--GYFRN  121 (844)
T ss_dssp             SCCSCSEEEECTT-CCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-CSSCCSTT--CCCSS
T ss_pred             ccccCeEEeCCCC-CCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-CCcccccC--ccccc
Confidence            6788888888885 556666 56678888888888888888755 6678888888888888886 443 2111  12577


Q ss_pred             CCcccEEEccCCccccc------CCCCCCCEeccCCCCCCCCCCCCChhhHHH
Q 047302          123 VDSLEELDISGTAIRQL------SRLCSLTKWDLSDCNLPVEGGEIPRDICYL  169 (188)
Q Consensus       123 l~~L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l  169 (188)
                      +++|++|++++|.+++.      +.+++|++|++++|.++.   ..|..+..+
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~---~~~~~l~~l  171 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL---VCEHELEPL  171 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC---CCSGGGHHH
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe---eCHHHcccc
Confidence            88888888888877554      677888888888887763   345555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.21  E-value=5.6e-11  Score=101.53  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=17.6

Q ss_pred             CCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          121 GKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       121 ~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      ..+++|+.|++++|.++.+     ..+++|+.|++++|+++.
T Consensus       533 ~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  574 (680)
T 1ziw_A          533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT  574 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             cCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence            4444445555555444433     344445555555555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.21  E-value=1.8e-11  Score=95.41  Aligned_cols=129  Identities=12%  Similarity=0.024  Sum_probs=88.7

Q ss_pred             eeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccccc---cc--ccccCCCCccEEeecCccCcccchh--
Q 047302           19 VRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIAN---LE--RFWGSMKSLTMLILDGTAIRELPLS--   91 (188)
Q Consensus        19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~---l~--~~~~~l~~L~~L~l~~~~i~~lp~~--   91 (188)
                      ...+..++++++.-..+...   . ...+++|++|++++|  .+..   ++  ..+..+++|++|++++|++..++..  
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~---~-~~~l~~L~~L~Ls~N--~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  217 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCE---Q-VRAFPALTSLDLSDN--PGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA  217 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTT---S-CCCCTTCCEEECCSC--TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHH---H-hccCCCCCEEECCCC--CCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence            34455555555443333211   1 126889999999994  4422   32  2336788999999999999766653  


Q ss_pred             --hhcCCCCcEEEccCCCCCccCCCccccccCCC---CcccEEEccCCccccc--CCCCCCCEeccCCCCCCC
Q 047302           92 --VEYLTGLFVLNFKDWQNLECLPSPISENLGKV---DSLEELDISGTAIRQL--SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus        92 --~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l---~~L~~L~l~~~~i~~~--~~l~~L~~L~l~~~~l~~  157 (188)
                        ++.+++|++|++++|. +....   |..+..+   ++|+.|++++|.++.+  .-.++|+.|++++|+++.
T Consensus       218 ~l~~~l~~L~~L~Ls~N~-l~~~~---p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNS-LRATV---NPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR  286 (310)
T ss_dssp             HHHHHTCCCSSEECTTSC-CCCCC---CSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS
T ss_pred             HHHhcCCCCCEEECCCCC-CCccc---hhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC
Confidence              5778999999999997 55441   3333444   6899999999998876  334689999999999886

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.20  E-value=1.3e-11  Score=106.64  Aligned_cols=104  Identities=18%  Similarity=0.172  Sum_probs=84.0

Q ss_pred             cccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc
Q 047302           60 KRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL  139 (188)
Q Consensus        60 ~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  139 (188)
                      +.+...+..+..+..|+.|++++|.+..+|..+..+++|++|++++|. +..+    |..++.+++|+.|++++|.++.+
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~l----p~~~~~l~~L~~L~Ls~N~l~~l  285 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTEL----PAEIKNLSNLRVLDLSHNRLTSL  285 (727)
T ss_dssp             -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCC----CGGGGGGTTCCEEECTTSCCSSC
T ss_pred             cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-Cccc----ChhhhCCCCCCEEeCcCCcCCcc
Confidence            344455667788999999999999999999999999999999999997 7666    55669999999999999999876


Q ss_pred             ----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          140 ----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       140 ----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                          ..+++|+.|+|++|.+..    +|..++.+++|
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~~----lp~~~~~l~~L  318 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVTT----LPWEFGNLCNL  318 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCCC----CCSSTTSCTTC
T ss_pred             ChhhcCCCCCCEEECCCCCCCc----cChhhhcCCCc
Confidence                788999999999999987    89888877777

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.20  E-value=6.7e-11  Score=98.02  Aligned_cols=101  Identities=22%  Similarity=0.187  Sum_probs=86.3

Q ss_pred             ceecEEEEccccccccccc-ccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           48 TSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ++|++|++++  +.+..++ ..+.++++|++|++++|++..+ |..+..+++|++|++++|. +..+    |..  .+++
T Consensus        21 ~~L~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l----p~~--~l~~   91 (520)
T 2z7x_B           21 QKTTILNISQ--NYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKI----SCH--PTVN   91 (520)
T ss_dssp             TTCSEEECCS--SCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEE----ECC--CCCC
T ss_pred             ccccEEECCC--CcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeec----Ccc--ccCC
Confidence            7899999999  5776665 5778999999999999999876 6689999999999999997 6665    444  7899


Q ss_pred             ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      |++|++++|.++..      +.+++|++|++++|.+..
T Consensus        92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~  129 (520)
T 2z7x_B           92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK  129 (520)
T ss_dssp             CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred             ccEEeccCCccccccchhhhccCCcceEEEecCcccch
Confidence            99999999988753      788999999999999874

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.20  E-value=1e-10  Score=83.79  Aligned_cols=112  Identities=23%  Similarity=0.281  Sum_probs=90.2

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE  127 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~  127 (188)
                      +.+.+++++  +.+..+|..+  .+++++|++++|++..+|+. +..+++|++|++++|. +..++   +..+..+++|+
T Consensus         8 ~~~~l~~~~--~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~---~~~~~~l~~L~   79 (177)
T 2o6r_A            8 SGTEIRCNS--KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLP---DGVFDKLTKLT   79 (177)
T ss_dssp             ETTEEECCS--SCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCC---TTTTTTCTTCC
T ss_pred             CCCEEEecC--CCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeC---hhHccCCCccC
Confidence            356788888  6888888533  46899999999999988754 6889999999999997 77664   23468899999


Q ss_pred             EEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          128 ELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       128 ~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      .|++++|.++..     ..+++|++|++++|.++.    +|.. +..+++|
T Consensus        80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~l~~L  126 (177)
T 2o6r_A           80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKS----VPDGIFDRLTSL  126 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTTTTTCTTC
T ss_pred             EEECCCCCccccCHHHhhCCcccCEEECcCCcceE----eCHHHhcCCccc
Confidence            999999999876     578899999999999987    7765 3555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.20  E-value=3.7e-11  Score=101.19  Aligned_cols=117  Identities=16%  Similarity=0.129  Sum_probs=95.5

Q ss_pred             EEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEE
Q 047302           22 IGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVL  101 (188)
Q Consensus        22 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L  101 (188)
                      +..++++++.-..++.     + ..+++|+.|++++  |.+..+|..+..+++|+.|++++|++..+| .++.+++|+.|
T Consensus       443 L~~L~Ls~n~l~~lp~-----~-~~l~~L~~L~Ls~--N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L  513 (567)
T 1dce_A          443 VRVLHLAHKDLTVLCH-----L-EQLLLVTHLDLSH--NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQEL  513 (567)
T ss_dssp             CSEEECTTSCCSSCCC-----G-GGGTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEE
T ss_pred             ceEEEecCCCCCCCcC-----c-cccccCcEeecCc--ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEE
Confidence            5567777665444432     2 2689999999999  688899999999999999999999999998 89999999999


Q ss_pred             EccCCCCCccCCCccccccCCCCcccEEEccCCccccc--------CCCCCCCEecc
Q 047302          102 NFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--------SRLCSLTKWDL  150 (188)
Q Consensus       102 ~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--------~~l~~L~~L~l  150 (188)
                      ++++|. +..++  .|..++.+++|+.|++++|.+++.        ..+++|+.|++
T Consensus       514 ~Ls~N~-l~~~~--~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          514 LLCNNR-LQQSA--AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             ECCSSC-CCSSS--TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             ECCCCC-CCCCC--CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999997 66551  045668999999999999999876        34788888864

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.19  E-value=7.2e-11  Score=96.84  Aligned_cols=37  Identities=8%  Similarity=0.159  Sum_probs=18.5

Q ss_pred             CCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          121 GKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       121 ~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      ..+++|+.|++++|.+++.   ..+++|+.|++++|++..
T Consensus       328 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~  367 (466)
T 1o6v_A          328 SSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISD  367 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred             ccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCc
Confidence            3444455555555544433   445555555555555553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.19  E-value=5.3e-11  Score=104.39  Aligned_cols=118  Identities=16%  Similarity=0.131  Sum_probs=97.1

Q ss_pred             cceecEEEEcccccccccc-cccccCCCCccEEeecCcc-Cccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTA-IREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++++|++++  +.++.+ +..+.++++|++|++++|. +..+ |..+.++++|++|++++|. +..+.   |..++.+
T Consensus        23 p~~l~~LdLs~--N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~---p~~~~~l   96 (844)
T 3j0a_A           23 LNTTERLLLSF--NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLH---PDAFQGL   96 (844)
T ss_dssp             CTTCCEEEEES--CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEEC---TTSSCSC
T ss_pred             CCCcCEEECCC--CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccC---HhHccCC
Confidence            57899999999  677665 5678999999999999994 4577 6679999999999999997 65543   5667999


Q ss_pred             CcccEEEccCCccccc-------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          124 DSLEELDISGTAIRQL-------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      ++|++|++++|.+++.       ..+++|++|++++|.+..  ...+..++++++|
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~--~~~~~~~~~L~~L  150 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS--LYLHPSFGKLNSL  150 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCC--CCCCGGGGTCSSC
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccc--cccchhHhhCCCC
Confidence            9999999999998762       688999999999999986  3334567777766

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.17  E-value=3.4e-11  Score=99.61  Aligned_cols=80  Identities=14%  Similarity=0.147  Sum_probs=37.5

Q ss_pred             CCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc----CCCCCCC
Q 047302           71 SMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL----SRLCSLT  146 (188)
Q Consensus        71 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~----~~l~~L~  146 (188)
                      .+++|+.|++++|.+..+|. ...+++|+.|++++|. +..+    |..+..+++|+.|++++|.++.+    ..+++|+
T Consensus       167 ~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~----~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~  240 (487)
T 3oja_A          167 SSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFM----GPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE  240 (487)
T ss_dssp             GTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEE----CGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred             hCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCC----CHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence            34445555555554444432 2234455555555544 3333    22234455555555555555443    3444555


Q ss_pred             EeccCCCCCC
Q 047302          147 KWDLSDCNLP  156 (188)
Q Consensus       147 ~L~l~~~~l~  156 (188)
                      .|++++|.+.
T Consensus       241 ~L~l~~N~l~  250 (487)
T 3oja_A          241 HFDLRGNGFH  250 (487)
T ss_dssp             EEECTTCCBC
T ss_pred             EEEcCCCCCc
Confidence            5555555544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.17  E-value=6.2e-11  Score=92.30  Aligned_cols=106  Identities=14%  Similarity=0.124  Sum_probs=64.3

Q ss_pred             cceecEEEEcccccccccccccc--cCCCCccEEeecCccCcc-cc----hhhhcCCCCcEEEccCCCCCccCCCccccc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFW--GSMKSLTMLILDGTAIRE-LP----LSVEYLTGLFVLNFKDWQNLECLPSPISEN  119 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~--~~l~~L~~L~l~~~~i~~-lp----~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~  119 (188)
                      +++|++|++++| ......|..+  ..+++|++|++++|.+.. .+    ..+..+++|++|++++|. +...+   |..
T Consensus        90 ~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~---~~~  164 (310)
T 4glp_A           90 YSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFS---CEQ  164 (310)
T ss_dssp             HSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCC---TTS
T ss_pred             cCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhh---HHH
Confidence            455777777774 3223455544  667777777777777653 22    223456777777777776 44443   334


Q ss_pred             cCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302          120 LGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       120 l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~  157 (188)
                      ++.+++|++|++++|.+...         ..+++|++|++++|.++.
T Consensus       165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  211 (310)
T 4glp_A          165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET  211 (310)
T ss_dssp             CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred             hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc
Confidence            56667777777777764321         456666666776666654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.17  E-value=1.2e-10  Score=95.55  Aligned_cols=102  Identities=23%  Similarity=0.253  Sum_probs=71.4

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|+.|++++  +.+..++. +..+++|+.|++++|.+..+++ +..+++|+.|++++|. +..++    . +..+++
T Consensus       241 ~l~~L~~L~l~~--n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~----~-~~~l~~  310 (466)
T 1o6v_A          241 SLTNLTDLDLAN--NQISNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ-LEDIS----P-ISNLKN  310 (466)
T ss_dssp             GCTTCSEEECCS--SCCCCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC-CSCCG----G-GGGCTT
T ss_pred             cCCCCCEEECCC--Cccccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc-ccCch----h-hcCCCC
Confidence            467778888877  45555554 5677777888887777776664 6777777777777775 54432    1 466777


Q ss_pred             ccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.|++++|.+++.   ..+++|+.|++++|.++.
T Consensus       311 L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  345 (466)
T 1o6v_A          311 LTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSD  345 (466)
T ss_dssp             CSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CCEEECcCCcCCCchhhccCccCCEeECCCCccCC
Confidence            77777777777665   567777777777777765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.16  E-value=1.6e-10  Score=96.89  Aligned_cols=101  Identities=22%  Similarity=0.193  Sum_probs=68.4

Q ss_pred             ceecEEEEccccccccccc-ccccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           48 TSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      +++++|++++  +.+..++ ..+.++++|++|++++|++..+ |..+..+++|++|++++|. +.++|    ..  .+++
T Consensus        52 ~~L~~L~Ls~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp----~~--~l~~  122 (562)
T 3a79_B           52 PRTKALSLSQ--NSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNIS----CC--PMAS  122 (562)
T ss_dssp             TTCCEEECCS--SCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEEC----SC--CCTT
T ss_pred             CCcCEEECCC--CCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccC----cc--cccc
Confidence            5677777777  4565554 4567777777777777777755 4456777777777777776 55553    32  5677


Q ss_pred             ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      |++|++++|.++++      ..+++|++|++++|.+..
T Consensus       123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             CCEEECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            77777777776553      566777777777777664

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.16  E-value=1.1e-10  Score=95.72  Aligned_cols=118  Identities=20%  Similarity=0.163  Sum_probs=85.4

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF   99 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~   99 (188)
                      ..+..+++++..-..++     .+ ..+++|++|++++  +.+..+|  +..+++|++|++++|++..+|  ++.+++|+
T Consensus        42 ~~L~~L~Ls~n~l~~~~-----~l-~~l~~L~~L~Ls~--n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~  109 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMT-----GI-EKLTGLTKLICTS--NNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT  109 (457)
T ss_dssp             TTCCEEECCSSCCCCCT-----TG-GGCTTCSEEECCS--SCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred             CCCCEEEccCCCcccCh-----hh-cccCCCCEEEccC--CcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence            44566666654433331     11 2578888888888  5676665  577888888888888888775  77888888


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--CCCCCCCEeccCCCCCC
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--~~l~~L~~L~l~~~~l~  156 (188)
                      +|++++|. +..++      ++.+++|++|++++|.++++  ..+++|+.|++++|...
T Consensus       110 ~L~L~~N~-l~~l~------~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~  161 (457)
T 3bz5_A          110 YLNCDTNK-LTKLD------VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKI  161 (457)
T ss_dssp             EEECCSSC-CSCCC------CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCC
T ss_pred             EEECCCCc-CCeec------CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcc
Confidence            88888886 55542      47788888888888888776  77888888888888544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.15  E-value=8.7e-11  Score=99.86  Aligned_cols=56  Identities=21%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             ceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccC
Q 047302           48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECL  112 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l  112 (188)
                      ++|+.|++++  +.++.+|.   .+++|++|++++|++..+|.   .+++|++|++++|. +..+
T Consensus        61 ~~L~~L~L~~--N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l  116 (622)
T 3g06_A           61 AHITTLVIPD--NNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHL  116 (622)
T ss_dssp             TTCSEEEECS--CCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCC
T ss_pred             CCCcEEEecC--CCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCC
Confidence            4566666666  45555554   35566666666666666654   45566666666654 4443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.14  E-value=1.2e-10  Score=95.51  Aligned_cols=99  Identities=23%  Similarity=0.204  Sum_probs=55.4

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|++|++++  +.+..++  +..+++|++|++++|++..+|  ++.+++|++|++++|. +..++      ++.+++
T Consensus        83 ~l~~L~~L~Ls~--N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~------l~~l~~  149 (457)
T 3bz5_A           83 QNTNLTYLACDS--NKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID------VSHNTQ  149 (457)
T ss_dssp             TCTTCSEEECCS--SCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC------CTTCTT
T ss_pred             cCCCCCEEECcC--CCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec------cccCCc
Confidence            455666666666  3454443  455666666666666665554  5556666666666654 44331      355566


Q ss_pred             ccEEEccCCc-cccc--CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTA-IRQL--SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~-i~~~--~~l~~L~~L~l~~~~l~~  157 (188)
                      |++|++++|. +...  ..+++|+.|++++|+++.
T Consensus       150 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          150 LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence            6666666662 3222  555566666666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.13  E-value=1.3e-11  Score=96.74  Aligned_cols=121  Identities=18%  Similarity=0.186  Sum_probs=77.2

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCc-cCc--ccchhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIR--ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      .+++|++|++++| ..-...+..+..+++|++|++++| .+.  .++..+..+++|++|++++|..+...  .++..+..
T Consensus       116 ~~~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~  192 (336)
T 2ast_B          116 QCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK--HVQVAVAH  192 (336)
T ss_dssp             TBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--HHHHHHHH
T ss_pred             hCCCCCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--HHHHHHHh
Confidence            4677777777774 322345555666777888888777 565  35656777777888888777223321  12344566


Q ss_pred             CC-cccEEEccCCc--ccc--c----CCCCCCCEeccCCCC-CCCCCCCCChhhHHHhhh
Q 047302          123 VD-SLEELDISGTA--IRQ--L----SRLCSLTKWDLSDCN-LPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       123 l~-~L~~L~l~~~~--i~~--~----~~l~~L~~L~l~~~~-l~~~~~~lp~~l~~l~~L  172 (188)
                      ++ +|+.|++++|.  +++  +    ..+++|+.|++++|. ++.   ..+..+..+++|
T Consensus       193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~---~~~~~l~~l~~L  249 (336)
T 2ast_B          193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYL  249 (336)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCG---GGGGGGGGCTTC
T ss_pred             cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCH---HHHHHHhCCCCC
Confidence            77 88888888883  432  1    567888888888887 442   245555555555

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.10  E-value=9.7e-13  Score=96.22  Aligned_cols=103  Identities=19%  Similarity=0.135  Sum_probs=89.5

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|++|++++  +.+..+| .+..+++|++|++++|.+..+|..+..+++|++|++++|. +..+    | .+..+++
T Consensus        46 ~l~~L~~L~ls~--n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l----~-~~~~l~~  116 (198)
T 1ds9_A           46 TLKACKHLALST--NNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASL----S-GIEKLVN  116 (198)
T ss_dssp             HTTTCSEEECSE--EEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCH----H-HHHHHHH
T ss_pred             cCCCCCEEECCC--CCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcC----C-ccccCCC
Confidence            588999999999  6787788 6788999999999999999999888888999999999997 6654    3 4678899


Q ss_pred             ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.|++++|.++++      ..+++|+.|++++|.+..
T Consensus       117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            99999999988764      788999999999998865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.10  E-value=2.9e-10  Score=93.26  Aligned_cols=96  Identities=19%  Similarity=0.186  Sum_probs=41.0

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE  128 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~  128 (188)
                      +|++|++++  +.+..+|. +..+++|++|++++|++..+|..   ..+|++|++++|. +..+    | .++.+++|+.
T Consensus       132 ~L~~L~L~~--n~l~~lp~-~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~-l~~l----~-~~~~l~~L~~  199 (454)
T 1jl5_A          132 LLEYLGVSN--NQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQ-LEEL----P-ELQNLPFLTA  199 (454)
T ss_dssp             TCCEEECCS--SCCSSCCC-CTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSC----C-CCTTCTTCCE
T ss_pred             CCCEEECcC--CCCCCCcc-cCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCc-CCcC----c-cccCCCCCCE
Confidence            344444444  23333332 34444444444444444443321   1244444444443 3322    2 2355555566


Q ss_pred             EEccCCccccc-CCCCCCCEeccCCCCCC
Q 047302          129 LDISGTAIRQL-SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       129 L~l~~~~i~~~-~~l~~L~~L~l~~~~l~  156 (188)
                      |++++|.++++ ...++|+.|++++|.++
T Consensus       200 L~l~~N~l~~l~~~~~~L~~L~l~~n~l~  228 (454)
T 1jl5_A          200 IYADNNSLKKLPDLPLSLESIVAGNNILE  228 (454)
T ss_dssp             EECCSSCCSSCCCCCTTCCEEECCSSCCS
T ss_pred             EECCCCcCCcCCCCcCcccEEECcCCcCC
Confidence            66655555443 12224444444444444

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.09  E-value=2.7e-10  Score=95.95  Aligned_cols=73  Identities=33%  Similarity=0.313  Sum_probs=33.0

Q ss_pred             CccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCcccccCCC-CCCCEeccCC
Q 047302           74 SLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQLSRL-CSLTKWDLSD  152 (188)
Q Consensus        74 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~l-~~L~~L~l~~  152 (188)
                      +|++|++++|.+..+|.   .+++|+.|++++|. +..+|    .   .+++|+.|++++|.++.+..+ ++|+.|++++
T Consensus       121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp----~---~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~  189 (571)
T 3cvr_A          121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLP----E---LPTSLEVLSVRNNQLTFLPELPESLEALDVST  189 (571)
T ss_dssp             TCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----C---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCC----C---cCCCcCEEECCCCCCCCcchhhCCCCEEECcC
Confidence            44444444444444443   34444444444443 33322    1   234455555555554443111 3455556665


Q ss_pred             CCCCC
Q 047302          153 CNLPV  157 (188)
Q Consensus       153 ~~l~~  157 (188)
                      |.++.
T Consensus       190 N~L~~  194 (571)
T 3cvr_A          190 NLLES  194 (571)
T ss_dssp             SCCSS
T ss_pred             CCCCc
Confidence            55554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.09  E-value=2.8e-10  Score=93.36  Aligned_cols=104  Identities=19%  Similarity=0.227  Sum_probs=64.2

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCc----------
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSP----------  115 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~----------  115 (188)
                      .+++|+++++++  +.+..+|..   ..+|++|++++|++..+| .++.+++|++|++++|. +..+|..          
T Consensus       151 ~l~~L~~L~l~~--N~l~~lp~~---~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~  223 (454)
T 1jl5_A          151 NSSFLKIIDVDN--NSLKKLPDL---PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAG  223 (454)
T ss_dssp             TCTTCCEEECCS--SCCSCCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             CCCCCCEEECCC--CcCcccCCC---cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc-CCcCCCCcCcccEEECc
Confidence            577888888888  566666643   347788888888777776 57777777777777775 4443211          


Q ss_pred             ------cccccCCCCcccEEEccCCccccc-CCCCCCCEeccCCCCCCC
Q 047302          116 ------ISENLGKVDSLEELDISGTAIRQL-SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       116 ------~~~~l~~l~~L~~L~l~~~~i~~~-~~l~~L~~L~l~~~~l~~  157 (188)
                            +| .++.+++|+.|++++|.++.+ ..+++|+.|++++|.++.
T Consensus       224 ~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~  271 (454)
T 1jl5_A          224 NNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTD  271 (454)
T ss_dssp             SSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSC
T ss_pred             CCcCCccc-ccCCCCCCCEEECCCCcCCcccccccccCEEECCCCcccc
Confidence                  12 134555555555555555544 333455666666655554

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.06  E-value=5.2e-10  Score=95.10  Aligned_cols=77  Identities=23%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|++|++++  +.+..+|.   .+++|++|++++|.+..+|.   .+.+|+.|++++|. +..+|.       .+++
T Consensus        79 ~l~~L~~L~Ls~--N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~-------~l~~  142 (622)
T 3g06_A           79 LPPELRTLEVSG--NQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPV-------LPPG  142 (622)
T ss_dssp             CCTTCCEEEECS--CCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCC-------CCTT
T ss_pred             cCCCCCEEEcCC--CcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCC-------CCCC
Confidence            467888889988  56777775   56788888888888877765   45667777776665 554432       1245


Q ss_pred             ccEEEccCCcccc
Q 047302          126 LEELDISGTAIRQ  138 (188)
Q Consensus       126 L~~L~l~~~~i~~  138 (188)
                      |++|++++|.++.
T Consensus       143 L~~L~Ls~N~l~~  155 (622)
T 3g06_A          143 LQELSVSDNQLAS  155 (622)
T ss_dssp             CCEEECCSSCCSC
T ss_pred             CCEEECcCCcCCC
Confidence            5555555555444

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.06  E-value=1.2e-10  Score=91.30  Aligned_cols=106  Identities=22%  Similarity=0.318  Sum_probs=68.6

Q ss_pred             ccceecEEEEcccccccc--cccccccCCCCccEEeecCc-cCcc--cchhhhcCC-CCcEEEccCCC-CCccCCCcccc
Q 047302           46 YGTSVGTSIVGNCYKRIA--NLERFWGSMKSLTMLILDGT-AIRE--LPLSVEYLT-GLFVLNFKDWQ-NLECLPSPISE  118 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~--~l~~~~~~l~~L~~L~l~~~-~i~~--lp~~~~~l~-~L~~L~l~~~~-~l~~l~~~~~~  118 (188)
                      .+++|++|++++| ..+.  .++..+..+++|++|++++| .+..  ++..+..++ +|++|++++|. .+..  ..+|.
T Consensus       140 ~~~~L~~L~L~~~-~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~--~~l~~  216 (336)
T 2ast_B          140 KNSNLVRLNLSGC-SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQK--SDLST  216 (336)
T ss_dssp             TCTTCSEEECTTC-BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCH--HHHHH
T ss_pred             cCCCCCEEECCCC-CCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCH--HHHHH
Confidence            4677777777775 4554  35555667777777777777 7753  566667777 77777777773 1210  12234


Q ss_pred             ccCCCCcccEEEccCCc-cccc-----CCCCCCCEeccCCCC
Q 047302          119 NLGKVDSLEELDISGTA-IRQL-----SRLCSLTKWDLSDCN  154 (188)
Q Consensus       119 ~l~~l~~L~~L~l~~~~-i~~~-----~~l~~L~~L~l~~~~  154 (188)
                      .+..+++|+.|++++|. +++.     ..+++|++|++++|.
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            45567777777777776 4432     566777777777774

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.05  E-value=1.6e-12  Score=94.99  Aligned_cols=114  Identities=19%  Similarity=0.200  Sum_probs=90.3

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE  128 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~  128 (188)
                      .++...+.++.+.++.+|..+..+++|++|++++|++..+| .+..+++|++|++++|. +..+    |..+..+++|+.
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l----~~~~~~~~~L~~   97 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKI----ENLDAVADTLEE   97 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSC----SSHHHHHHHCSE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccc----cchhhcCCcCCE
Confidence            45555555421245666767889999999999999999998 89999999999999997 6666    444566789999


Q ss_pred             EEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCCh--hhHHHhhh
Q 047302          129 LDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPR--DICYLCLL  172 (188)
Q Consensus       129 L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~--~l~~l~~L  172 (188)
                      |++++|.++++   ..+++|+.|++++|.++.    +|.  .+..+++|
T Consensus        98 L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~----~~~~~~l~~l~~L  142 (198)
T 1ds9_A           98 LWISYNQIASLSGIEKLVNLRVLYMSNNKITN----WGEIDKLAALDKL  142 (198)
T ss_dssp             EEEEEEECCCHHHHHHHHHSSEEEESEEECCC----HHHHHHHTTTTTC
T ss_pred             EECcCCcCCcCCccccCCCCCEEECCCCcCCc----hhHHHHHhcCCCC
Confidence            99999998876   678899999999999986    554  45555555

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=7e-10  Score=87.47  Aligned_cols=98  Identities=20%  Similarity=0.204  Sum_probs=56.8

Q ss_pred             EEEcccccccccccccccCCCCccEEeecC-ccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEE
Q 047302           53 SIVGNCYKRIANLERFWGSMKSLTMLILDG-TAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD  130 (188)
Q Consensus        53 L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~  130 (188)
                      ++.++. +.+..+|. +..+.+|+.|+|++ |.+..+|+ .+..+++|+.|++++|. +..++   |..+..+++|+.|+
T Consensus        13 v~~~~~-n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~---~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           13 LRCTRD-GALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVA---PDAFHFTPRLSRLN   86 (347)
T ss_dssp             EECCSS-CCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEEC---TTGGGSCSCCCEEE
T ss_pred             EEcCCC-CCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeC---HHHhcCCcCCCEEe
Confidence            345541 25666666 56666666666664 66665543 45666666666666665 54443   23345666666666


Q ss_pred             ccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          131 ISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       131 l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      +++|.++.+     ..++ |+.|++.+|.+..
T Consensus        87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            666666555     2222 6666666666653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.03  E-value=8.5e-10  Score=79.07  Aligned_cols=86  Identities=19%  Similarity=0.315  Sum_probs=73.5

Q ss_pred             cceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .++|++|++++  +.+..+ |..+.++++|++|++++|++..+|+. +..+++|++|++++|. +..++.   ..+..++
T Consensus        32 ~~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~---~~~~~l~  105 (174)
T 2r9u_A           32 PTDKQRLWLNN--NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPR---GAFDNLK  105 (174)
T ss_dssp             CTTCSEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCT
T ss_pred             CCCCcEEEeCC--CCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCH---HHhcccc
Confidence            37899999999  688776 56778999999999999999999876 5889999999999997 777652   2368899


Q ss_pred             cccEEEccCCcccc
Q 047302          125 SLEELDISGTAIRQ  138 (188)
Q Consensus       125 ~L~~L~l~~~~i~~  138 (188)
                      +|+.|++++|.+..
T Consensus       106 ~L~~L~L~~N~~~c  119 (174)
T 2r9u_A          106 SLTHIYLYNNPWDC  119 (174)
T ss_dssp             TCSEEECCSSCBCT
T ss_pred             CCCEEEeCCCCccc
Confidence            99999999998763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.02  E-value=1e-09  Score=78.26  Aligned_cols=85  Identities=24%  Similarity=0.327  Sum_probs=72.9

Q ss_pred             cceecEEEEcccccccccc-cccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+++++|++++  +.+..+ |..+..+++|++|++++|++..+|+. +..+++|++|++++|. +..++.   ..+..++
T Consensus        29 ~~~l~~L~L~~--N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~---~~~~~l~  102 (170)
T 3g39_A           29 PTTTQVLYLYD--NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPR---GAFDNLK  102 (170)
T ss_dssp             CTTCSEEECCS--SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT---TTTTTCT
T ss_pred             CCCCcEEEcCC--CcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCH---HHhcCCC
Confidence            47899999999  788777 56678999999999999999988765 5899999999999997 777652   3468899


Q ss_pred             cccEEEccCCccc
Q 047302          125 SLEELDISGTAIR  137 (188)
Q Consensus       125 ~L~~L~l~~~~i~  137 (188)
                      +|+.|++++|.+.
T Consensus       103 ~L~~L~L~~N~~~  115 (170)
T 3g39_A          103 SLTHIWLLNNPWD  115 (170)
T ss_dssp             TCCEEECCSSCBC
T ss_pred             CCCEEEeCCCCCC
Confidence            9999999999775

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.01  E-value=2.3e-11  Score=97.40  Aligned_cols=106  Identities=17%  Similarity=0.195  Sum_probs=54.3

Q ss_pred             ccceecEEEEccccccccc-----ccccccCCCCccEEeecCccCcc-----cchhhhcC---------CCCcEEEccCC
Q 047302           46 YGTSVGTSIVGNCYKRIAN-----LERFWGSMKSLTMLILDGTAIRE-----LPLSVEYL---------TGLFVLNFKDW  106 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l---------~~L~~L~l~~~  106 (188)
                      .+++|++|++++  +.+..     ++..+..+++|++|++++|.+..     ++..+..+         ++|++|++++|
T Consensus        92 ~~~~L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           92 KCPKLHTVRLSD--NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             TCTTCCEEECCS--CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             hCCcccEEECCC--CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            345555555555  23322     44444555556666666555531     12222222         55666666655


Q ss_pred             CCCccCCCccc---cccCCCCcccEEEccCCcccc----------cCCCCCCCEeccCCCCCC
Q 047302          107 QNLECLPSPIS---ENLGKVDSLEELDISGTAIRQ----------LSRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       107 ~~l~~l~~~~~---~~l~~l~~L~~L~l~~~~i~~----------~~~l~~L~~L~l~~~~l~  156 (188)
                      . +..  ..++   ..+..+++|+.|++++|.+++          +..+++|+.|++++|.++
T Consensus       170 ~-l~~--~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          170 R-LEN--GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             C-CTG--GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             C-CCc--HHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence            4 321  1111   234456666777777766652          145666777777777663

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.01  E-value=3.9e-10  Score=94.97  Aligned_cols=104  Identities=28%  Similarity=0.305  Sum_probs=62.8

Q ss_pred             eecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccE
Q 047302           49 SVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEE  128 (188)
Q Consensus        49 ~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~  128 (188)
                      +|+.|++++  |.+..+|.   .+++|+.|++++|.+..+|.   .+++|+.|++++|. +..+|    . +.  ++|+.
T Consensus       121 ~L~~L~Ls~--N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-L~~lp----~-l~--~~L~~  184 (571)
T 3cvr_A          121 SLKHLDVDN--NQLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ-LTFLP----E-LP--ESLEA  184 (571)
T ss_dssp             TCCEEECCS--SCCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCC----C-CC--TTCCE
T ss_pred             CCCEEECCC--CcCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC-CCCcc----h-hh--CCCCE
Confidence            556666665  45555554   46677777777777777664   45677777777775 55543    2 23  66667


Q ss_pred             EEccCCcccccCCCC-CC-------CEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          129 LDISGTAIRQLSRLC-SL-------TKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       129 L~l~~~~i~~~~~l~-~L-------~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      |++++|.++.+..++ +|       +.|++++|.++.    +|..+..+++|
T Consensus       185 L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~----lp~~l~~l~~L  232 (571)
T 3cvr_A          185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITH----IPENILSLDPT  232 (571)
T ss_dssp             EECCSSCCSSCCCCC--------CCEEEECCSSCCCC----CCGGGGGSCTT
T ss_pred             EECcCCCCCchhhHHHhhhcccccceEEecCCCccee----cCHHHhcCCCC
Confidence            777777666541122 45       666666666665    66665555555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.98  E-value=5.2e-10  Score=88.55  Aligned_cols=42  Identities=17%  Similarity=0.146  Sum_probs=26.0

Q ss_pred             CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh-------hhcCCCCchhhhcc
Q 047302          140 SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL-------FKDEPESNSQIRRN  186 (188)
Q Consensus       140 ~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L-------~~~lp~~~~~l~~L  186 (188)
                      ..+++|+.|++++|+++.    +|.. +..++.|       ...+|. +.++.+|
T Consensus       199 ~~l~~L~~LdLs~N~l~~----lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L  248 (350)
T 4ay9_X          199 HGASGPVILDISRTRIHS----LPSYGLENLKKLRARSTYNLKKLPT-LEKLVAL  248 (350)
T ss_dssp             TTEECCSEEECTTSCCCC----CCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred             ccCcccchhhcCCCCcCc----cChhhhccchHhhhccCCCcCcCCC-chhCcCh
Confidence            456778888888888877    6653 4445544       455663 4444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.98  E-value=5.9e-10  Score=89.19  Aligned_cols=89  Identities=16%  Similarity=0.181  Sum_probs=44.6

Q ss_pred             cccCCCCccEEeecCccC-----cccchhhhcCCCCcEEEccCCCCCccCC-Ccccccc--CCCCcccEEEccCCcccc-
Q 047302           68 FWGSMKSLTMLILDGTAI-----RELPLSVEYLTGLFVLNFKDWQNLECLP-SPISENL--GKVDSLEELDISGTAIRQ-  138 (188)
Q Consensus        68 ~~~~l~~L~~L~l~~~~i-----~~lp~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~l--~~l~~L~~L~l~~~~i~~-  138 (188)
                      .+..+++|++|++++|.+     ..+|..+..+++|++|++++|. +.... ..+|..+  +.+++|+.|++++|.+++ 
T Consensus       211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~  289 (386)
T 2ca6_A          211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD  289 (386)
T ss_dssp             TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH
T ss_pred             HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH
Confidence            344555555555555555     3345455555555555555554 22110 0012333  225556666666665555 


Q ss_pred             ----c-----CCCCCCCEeccCCCCCCC
Q 047302          139 ----L-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       139 ----~-----~~l~~L~~L~l~~~~l~~  157 (188)
                          +     ..+++|++|++++|.++.
T Consensus       290 g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          290 AVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence                2     234566666666665554

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.93  E-value=9.2e-10  Score=87.14  Aligned_cols=64  Identities=11%  Similarity=0.092  Sum_probs=35.1

Q ss_pred             ccceecEEEEccccccc-ccccc-cccCCCCccE-EeecCccCcccc-hhhhcCCCCcEEEccCCCCCccC
Q 047302           46 YGTSVGTSIVGNCYKRI-ANLER-FWGSMKSLTM-LILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECL  112 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i-~~l~~-~~~~l~~L~~-L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l  112 (188)
                      ++++|++|++++  +.+ +.+|. .+.+++++.. +.+.+|++..++ ..+..+++|+++++++|. +..+
T Consensus        52 ~l~~L~~L~Ls~--N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~  119 (350)
T 4ay9_X           52 GFGDLEKIEISQ--NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHL  119 (350)
T ss_dssp             TCTTCCEEEEEC--CTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSC
T ss_pred             CCCCCCEEECcC--CCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccC
Confidence            466666666666  333 43442 3355555443 344455666553 335666777777776664 4443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.81  E-value=1.1e-09  Score=89.31  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=21.4

Q ss_pred             cCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCC
Q 047302          120 LGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       120 l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~  156 (188)
                      +..+++|+.|++++|.+++.          ...++|++|++++|.++
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            34456666666666665543          12456666666666665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.79  E-value=1.2e-08  Score=81.01  Aligned_cols=109  Identities=14%  Similarity=0.139  Sum_probs=65.6

Q ss_pred             ccc-eecEEEEcccccccccc-cccccCC-----CCccEEeecCccCcccc-hh----hhcC-CCCcEEEccCCCCCccC
Q 047302           46 YGT-SVGTSIVGNCYKRIANL-ERFWGSM-----KSLTMLILDGTAIRELP-LS----VEYL-TGLFVLNFKDWQNLECL  112 (188)
Q Consensus        46 ~l~-~L~~L~l~~~~~~i~~l-~~~~~~l-----~~L~~L~l~~~~i~~lp-~~----~~~l-~~L~~L~l~~~~~l~~l  112 (188)
                      .++ +|++|++++  +.+... +..+..+     ++|++|++++|.+...+ ..    +..+ ++|++|++++|. +...
T Consensus        48 ~~~~~L~~L~Ls~--N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~  124 (362)
T 3goz_A           48 NTPASVTSLNLSG--NSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK  124 (362)
T ss_dssp             TCCTTCCEEECCS--SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGS
T ss_pred             hCCCceeEEECcC--CCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcH
Confidence            355 788888887  455432 3333332     77888888888876443 22    3444 778888888876 5444


Q ss_pred             CCc-cccccCC-CCcccEEEccCCccccc---------CCCC-CCCEeccCCCCCCC
Q 047302          113 PSP-ISENLGK-VDSLEELDISGTAIRQL---------SRLC-SLTKWDLSDCNLPV  157 (188)
Q Consensus       113 ~~~-~~~~l~~-l~~L~~L~l~~~~i~~~---------~~l~-~L~~L~l~~~~l~~  157 (188)
                      +.. +...+.. ..+|++|++++|.+++.         ..++ +|++|++++|.++.
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence            311 1112333 35777888888777643         2343 77777777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.73  E-value=2.8e-08  Score=78.85  Aligned_cols=109  Identities=17%  Similarity=0.180  Sum_probs=82.6

Q ss_pred             ccceecEEEEccccccccccc-----ccccCCC-CccEEeecCccCccc-chhhhcC-----CCCcEEEccCCCCCccCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-----RFWGSMK-SLTMLILDGTAIREL-PLSVEYL-----TGLFVLNFKDWQNLECLP  113 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-----~~~~~l~-~L~~L~l~~~~i~~l-p~~~~~l-----~~L~~L~l~~~~~l~~l~  113 (188)
                      ...+|++|++++  +.+...+     +.+..++ +|++|++++|.+... +..+..+     ++|++|++++|. +....
T Consensus        20 ~~~~L~~L~Ls~--n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~   96 (362)
T 3goz_A           20 IPHGVTSLDLSL--NNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKS   96 (362)
T ss_dssp             SCTTCCEEECTT--SCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred             CCCCceEEEccC--CCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHH
Confidence            456699999999  4675554     5667787 899999999999854 5455554     999999999997 55432


Q ss_pred             C-ccccccCCC-CcccEEEccCCccccc---------CC-CCCCCEeccCCCCCCC
Q 047302          114 S-PISENLGKV-DSLEELDISGTAIRQL---------SR-LCSLTKWDLSDCNLPV  157 (188)
Q Consensus       114 ~-~~~~~l~~l-~~L~~L~l~~~~i~~~---------~~-l~~L~~L~l~~~~l~~  157 (188)
                      . .+...+..+ ++|+.|++++|.+++.         .. .++|++|++++|.+.+
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~  152 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGI  152 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence            1 111224555 8999999999999876         23 3689999999999884

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.70  E-value=9.7e-09  Score=83.59  Aligned_cols=107  Identities=19%  Similarity=0.269  Sum_probs=51.0

Q ss_pred             cceecEEEEcccccccc-----cccccccCCCCccEEeecCccCcc-cchhh-hcCC----CCcEEEccCCCCCccCC-C
Q 047302           47 GTSVGTSIVGNCYKRIA-----NLERFWGSMKSLTMLILDGTAIRE-LPLSV-EYLT----GLFVLNFKDWQNLECLP-S  114 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~L~~L~l~~~~i~~-lp~~~-~~l~----~L~~L~l~~~~~l~~l~-~  114 (188)
                      +++|+++++++|  .+.     .++..+..+++|++|++++|.+.. .+..+ ..+.    +|++|++++|. +.... .
T Consensus        27 ~~~L~~L~L~~~--~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~  103 (461)
T 1z7x_W           27 LQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG  103 (461)
T ss_dssp             HTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             cCCccEEEccCC--CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHH
Confidence            555666666653  332     334444555566666666665542 12222 2233    46666666654 33110 1


Q ss_pred             ccccccCCCCcccEEEccCCccccc----------CCCCCCCEeccCCCCCC
Q 047302          115 PISENLGKVDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       115 ~~~~~l~~l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~  156 (188)
                      .++..+..+++|+.|++++|.+.+.          ...++|++|++++|.++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  155 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS  155 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred             HHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence            1233445555566666665555432          12334555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.67  E-value=4.7e-08  Score=76.91  Aligned_cols=81  Identities=20%  Similarity=0.180  Sum_probs=69.6

Q ss_pred             cEEeecCc-cCcccchhhhcCCCCcEEEccC-CCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEe
Q 047302           76 TMLILDGT-AIRELPLSVEYLTGLFVLNFKD-WQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKW  148 (188)
Q Consensus        76 ~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L  148 (188)
                      ..++.+++ ++..+|. +..+++|+.|++++ |. +..++   +..++.+++|+.|++++|.++.+     ..+++|+.|
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~-l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L   85 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQH-LQHLE---LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS-CCEEC---GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC-CCCcC---hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEE
Confidence            45688887 8999998 99999999999997 76 77765   34578999999999999999876     679999999


Q ss_pred             ccCCCCCCCCCCCCChh
Q 047302          149 DLSDCNLPVEGGEIPRD  165 (188)
Q Consensus       149 ~l~~~~l~~~~~~lp~~  165 (188)
                      +|++|+++.    +|..
T Consensus        86 ~l~~N~l~~----~~~~   98 (347)
T 2ifg_A           86 NLSFNALES----LSWK   98 (347)
T ss_dssp             ECCSSCCSC----CCST
T ss_pred             eCCCCccce----eCHH
Confidence            999999997    6654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.59  E-value=2.7e-08  Score=79.54  Aligned_cols=108  Identities=15%  Similarity=0.044  Sum_probs=60.8

Q ss_pred             cceecEEEEccccccccc-----ccccc-cCCCCccEEeecCccCcc-----cchhhhcCCCCcEEEccCCCCCccCC-C
Q 047302           47 GTSVGTSIVGNCYKRIAN-----LERFW-GSMKSLTMLILDGTAIRE-----LPLSVEYLTGLFVLNFKDWQNLECLP-S  114 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~-----l~~~~-~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~l~-~  114 (188)
                      +.+|+.|++++  +.+..     +...+ ...++|++|++++|.+..     ++..+...++|++|++++|. +.... .
T Consensus       125 L~~L~~L~Ls~--n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~  201 (372)
T 3un9_A          125 FLRARKLGLQL--NSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLE  201 (372)
T ss_dssp             HHTEEEEECCS--SCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHH
T ss_pred             HHhccHhhcCC--CCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHH
Confidence            44566666666  34422     12222 234567777777776632     33445666777777777775 33211 0


Q ss_pred             ccccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302          115 PISENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       115 ~~~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~  157 (188)
                      .+++.+...++|+.|++++|.+++.         ...++|++|++++|.+.+
T Consensus       202 ~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          202 LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence            1123345556777777777777653         345677777777777663

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=9.7e-08  Score=68.92  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=83.7

Q ss_pred             ccceecEEEEcccccccc-----cccccccCCCCccEEeecCccCcc-----cchhhhcCCCCcEEEccCCCCCccC-CC
Q 047302           46 YGTSVGTSIVGNCYKRIA-----NLERFWGSMKSLTMLILDGTAIRE-----LPLSVEYLTGLFVLNFKDWQNLECL-PS  114 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~l-~~  114 (188)
                      ..++|++|++++| ..+.     .+.+.+...++|++|++++|.+..     +...+...++|++|++++|. +..- ..
T Consensus        34 ~~~~L~~L~L~~n-~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~  111 (185)
T 1io0_A           34 NDPDLEEVNLNNI-MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL  111 (185)
T ss_dssp             TCTTCCEEECTTC-TTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred             cCCCCCEEEecCC-CCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHH
Confidence            5789999999984 2663     355666778899999999999852     44556777899999999997 4321 01


Q ss_pred             ccccccCCCCcccEEEc--cCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302          115 PISENLGKVDSLEELDI--SGTAIRQL---------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       115 ~~~~~l~~l~~L~~L~l--~~~~i~~~---------~~l~~L~~L~l~~~~l~~  157 (188)
                      .+.+.+...++|+.|++  ++|.+.+.         ...++|+.|++++|.+..
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            12355677789999999  88988775         556889999999998764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.34  E-value=1.3e-07  Score=79.28  Aligned_cols=60  Identities=15%  Similarity=0.113  Sum_probs=29.2

Q ss_pred             ccceecEEEEccccccccc----ccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCC
Q 047302           46 YGTSVGTSIVGNCYKRIAN----LERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDW  106 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~----l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~  106 (188)
                      .+++|++|++++| .....    ++.....+++|++|++++|.+.     .++..+..+++|+.|++++|
T Consensus       162 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~  230 (592)
T 3ogk_B          162 HCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF  230 (592)
T ss_dssp             HCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC
T ss_pred             hCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc
Confidence            3566777777664 21111    2223344555555555555543     22333444555555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.33  E-value=2.4e-07  Score=74.04  Aligned_cols=109  Identities=12%  Similarity=0.083  Sum_probs=78.3

Q ss_pred             ccceecEEEEccccccccc--ccccccCCCCccEEeecCccCccc-chh----h-hcCCCCcEEEccCCCCCccCC-Ccc
Q 047302           46 YGTSVGTSIVGNCYKRIAN--LERFWGSMKSLTMLILDGTAIREL-PLS----V-EYLTGLFVLNFKDWQNLECLP-SPI  116 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~--l~~~~~~l~~L~~L~l~~~~i~~l-p~~----~-~~l~~L~~L~l~~~~~l~~l~-~~~  116 (188)
                      ...+|+.|++++|  .+..  +......+++++.|++++|.+... ...    + ...+.|+.|++++|. +.... ..+
T Consensus        99 ~~~~L~~L~Ls~n--~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l  175 (372)
T 3un9_A           99 GRHALDEVNLASC--QLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVL  175 (372)
T ss_dssp             CSSCEEEEECTTC--CCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHH
T ss_pred             CCCCceEEEecCC--CCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHH
Confidence            3478999999994  5532  223334566899999999998633 222    2 246889999999997 54321 112


Q ss_pred             ccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCC
Q 047302          117 SENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       117 ~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~  157 (188)
                      +..+...++|++|++++|.+++.         ...++|++|++++|.+++
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~  225 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD  225 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence            34457788999999999998764         566789999999999885

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.25  E-value=1.3e-07  Score=79.27  Aligned_cols=106  Identities=17%  Similarity=0.125  Sum_probs=69.4

Q ss_pred             ccceecEEEEcccccccccccccc-cCCCCccEEeecCc-cCcc--cchhhhcCCCCcEEEccCCCCCccCCC-cccccc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFW-GSMKSLTMLILDGT-AIRE--LPLSVEYLTGLFVLNFKDWQNLECLPS-PISENL  120 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~-~~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~l  120 (188)
                      .+++|+.|++++| ..-...+..+ ..+++|++|++++| .+..  ++.....+++|++|++++|. +..... .++...
T Consensus       103 ~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~  180 (594)
T 2p1m_B          103 SYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP  180 (594)
T ss_dssp             HCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC
T ss_pred             hCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh
Confidence            4678888888885 3222223333 25788999999888 5553  55555678899999998886 433221 122223


Q ss_pred             CCCCcccEEEccCCc--cccc------CCCCCCCEeccCCC
Q 047302          121 GKVDSLEELDISGTA--IRQL------SRLCSLTKWDLSDC  153 (188)
Q Consensus       121 ~~l~~L~~L~l~~~~--i~~~------~~l~~L~~L~l~~~  153 (188)
                      ..+++|+.|++++|.  +...      ..+++|++|++++|
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            467788888888886  2221      45688888888887

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.20  E-value=1.9e-06  Score=72.17  Aligned_cols=101  Identities=17%  Similarity=0.203  Sum_probs=62.1

Q ss_pred             eecEEEEccccccc--ccccccccCCCCccEEeecCccCcc-----cchhhhcCCCCcEEEccCCCCCccCC-Ccccccc
Q 047302           49 SVGTSIVGNCYKRI--ANLERFWGSMKSLTMLILDGTAIRE-----LPLSVEYLTGLFVLNFKDWQNLECLP-SPISENL  120 (188)
Q Consensus        49 ~L~~L~l~~~~~~i--~~l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~l~~l~-~~~~~~l  120 (188)
                      +|++|++++| ..+  ..++.....+++|++|++++|.+..     ++.....+++|+.|++++|. +.... ..++..+
T Consensus       139 ~L~~L~L~~~-~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~  216 (592)
T 3ogk_B          139 DLETLKLDKC-SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIA  216 (592)
T ss_dssp             GCCEEEEESC-EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHH
T ss_pred             cCcEEECcCC-CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHH
Confidence            4888888887 533  2233444567888888888887642     34445677888888888776 33221 1223334


Q ss_pred             CCCCcccEEEccCCccccc----CCCCCCCEeccC
Q 047302          121 GKVDSLEELDISGTAIRQL----SRLCSLTKWDLS  151 (188)
Q Consensus       121 ~~l~~L~~L~l~~~~i~~~----~~l~~L~~L~l~  151 (188)
                      ..+++|+.|++.+|.+.++    ..+++|+.|+++
T Consensus       217 ~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~  251 (592)
T 3ogk_B          217 RNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG  251 (592)
T ss_dssp             HHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred             hhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence            5677788888877766553    344445555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.16  E-value=9.4e-08  Score=80.09  Aligned_cols=57  Identities=19%  Similarity=0.141  Sum_probs=28.8

Q ss_pred             ccceecEEEEccccc-cc--ccccccccCCCCccEEeecCc-cCcccchhhhcCCCCcEEEc
Q 047302           46 YGTSVGTSIVGNCYK-RI--ANLERFWGSMKSLTMLILDGT-AIRELPLSVEYLTGLFVLNF  103 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~-~i--~~l~~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l  103 (188)
                      .+++|+.|++++| . .+  ..++.....+++|++|++++| .+..+|..+..+++|+.+++
T Consensus       182 ~~~~L~~L~l~~~-~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l  242 (594)
T 2p1m_B          182 TYTSLVSLNISCL-ASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGT  242 (594)
T ss_dssp             TCCCCCEEECTTC-CSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEEC
T ss_pred             cCCcCcEEEeccc-CCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEccc
Confidence            4556666666664 2 11  112222234566666666665 33344444555555555543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=1.1e-05  Score=62.93  Aligned_cols=80  Identities=13%  Similarity=0.131  Sum_probs=42.9

Q ss_pred             CCCccEEeecCccCcccchh-hhcCCCCcEEEccCCCCCccCCCccccccCCCCccc-EEEccCCccccc-----CCCCC
Q 047302           72 MKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE-ELDISGTAIRQL-----SRLCS  144 (188)
Q Consensus        72 l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~-~L~l~~~~i~~~-----~~l~~  144 (188)
                      +.+|+.+++++|++..+|.. +..+.+|+.+++..|  ++.++.   ..+..+.+|+ .+++.+ .++.+     ..+++
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~---~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ---RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECT---TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehH---HHhhCChhccEEEEEcc-cceEEchhhhhCCcc
Confidence            45566666666666555443 555566666666554  344431   2245555665 666555 33333     45556


Q ss_pred             CCEeccCCCCCCC
Q 047302          145 LTKWDLSDCNLPV  157 (188)
Q Consensus       145 L~~L~l~~~~l~~  157 (188)
                      |+.++++.|+++.
T Consensus       299 L~~l~l~~n~i~~  311 (329)
T 3sb4_A          299 LRYVLATGDKITT  311 (329)
T ss_dssp             EEEEEECSSCCCE
T ss_pred             CCEEEeCCCccCc
Confidence            6666665555554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.95  E-value=1.4e-05  Score=62.42  Aligned_cols=95  Identities=11%  Similarity=0.065  Sum_probs=75.7

Q ss_pred             cceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCc-EEEccCCCCCccCCCccccccCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLF-VLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~-~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      +++|+.+++++  +.++.+++ .+.++.+|+.+++..| ++.++. .+..+.+|+ .+.+.. . ++.++   +..+..+
T Consensus       225 ~~~L~~l~L~~--n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~---~~aF~~c  296 (329)
T 3sb4_A          225 MPNLVSLDISK--TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIE---FGAFMGC  296 (329)
T ss_dssp             CTTCCEEECTT--BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEEC---TTTTTTC
T ss_pred             cCCCeEEECCC--CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-ceEEc---hhhhhCC
Confidence            78899999998  67888875 5688999999999987 777765 478899999 999987 3 66664   2346889


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEec
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWD  149 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~  149 (188)
                      ++|+.+++.++.++.+     ..+++|+.+.
T Consensus       297 ~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          297 DNLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             ccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            9999999988888776     5677787765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.95  E-value=1.2e-05  Score=61.27  Aligned_cols=62  Identities=24%  Similarity=0.314  Sum_probs=32.7

Q ss_pred             hcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCC--CCCEeccCCCCCC
Q 047302           93 EYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLC--SLTKWDLSDCNLP  156 (188)
Q Consensus        93 ~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~--~L~~L~l~~~~l~  156 (188)
                      ..+++|+.|++++|. +..++ .+|..+..+++|+.|++++|.++++   ..+.  +|+.|++++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~-~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLD-DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCG-GGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCC-CCCCc-cchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence            345566666666664 43331 1122234556666666666665544   2222  5666666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.90  E-value=1.4e-05  Score=63.62  Aligned_cols=108  Identities=12%  Similarity=-0.008  Sum_probs=62.2

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCc-ccchhhh--cCCCCcEEEccCCCC--CccC-CCccccc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIR-ELPLSVE--YLTGLFVLNFKDWQN--LECL-PSPISEN  119 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~-~lp~~~~--~l~~L~~L~l~~~~~--l~~l-~~~~~~~  119 (188)
                      .+++|+.|.+++| ..+ .++. + .+++|+.|++..+.+. .....+.  .+++|++|+++.+..  .... ...+...
T Consensus       170 ~~P~L~~L~L~g~-~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          170 AMPLLNNLKIKGT-NNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             TCTTCCEEEEECC-BTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             cCCCCcEEEEeCC-CCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            3566777777664 222 2332 2 2567777777766654 2222232  678888888753110  0000 0000111


Q ss_pred             c--CCCCcccEEEccCCccccc--------CCCCCCCEeccCCCCCCC
Q 047302          120 L--GKVDSLEELDISGTAIRQL--------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       120 l--~~l~~L~~L~l~~~~i~~~--------~~l~~L~~L~l~~~~l~~  157 (188)
                      +  ..+++|+.|++.+|.+.+.        ..+++|++|++++|.+.+
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d  293 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD  293 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence            1  3478899999988887653        467889999998888775

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.88  E-value=8.3e-06  Score=58.29  Aligned_cols=78  Identities=17%  Similarity=0.083  Sum_probs=42.8

Q ss_pred             CccEEeecCccCcc-cchhhhcCCCCcEEEccCCCCCccCCCccccccCCC----CcccEEEccCCc-cccc-----CCC
Q 047302           74 SLTMLILDGTAIRE-LPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKV----DSLEELDISGTA-IRQL-----SRL  142 (188)
Q Consensus        74 ~L~~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l----~~L~~L~l~~~~-i~~~-----~~l  142 (188)
                      .|+.|+++++.+.. --..+..+++|++|++++|..++..  . -..+..+    ++|+.|++++|. |++.     ..+
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~--g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDG--C-LERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF  138 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHH--H-HHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHH--H-HHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence            46666666666542 1224556666666666666433211  0 0122332    356677776663 5553     566


Q ss_pred             CCCCEeccCCCC
Q 047302          143 CSLTKWDLSDCN  154 (188)
Q Consensus       143 ~~L~~L~l~~~~  154 (188)
                      ++|++|++++|.
T Consensus       139 ~~L~~L~L~~c~  150 (176)
T 3e4g_A          139 RNLKYLFLSDLP  150 (176)
T ss_dssp             TTCCEEEEESCT
T ss_pred             CCCCEEECCCCC
Confidence            777777777774

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.87  E-value=4.6e-06  Score=60.03  Aligned_cols=94  Identities=15%  Similarity=0.085  Sum_probs=70.7

Q ss_pred             ccccccccCCCCccEEeecCc-cCc-----ccchhhhcCCCCcEEEccCCCCCccC-CCccccccCCCCcccEEEccCCc
Q 047302           63 ANLERFWGSMKSLTMLILDGT-AIR-----ELPLSVEYLTGLFVLNFKDWQNLECL-PSPISENLGKVDSLEELDISGTA  135 (188)
Q Consensus        63 ~~l~~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~l~~l~~L~~L~l~~~~  135 (188)
                      +.+...+...++|++|++++| .+.     .+...+...++|++|++++|. +..- ...+.+.+...++|++|++++|.
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            334556677899999999999 884     344567778999999999997 4321 11123445566889999999999


Q ss_pred             cccc---------CCCCCCCEecc--CCCCCCC
Q 047302          136 IRQL---------SRLCSLTKWDL--SDCNLPV  157 (188)
Q Consensus       136 i~~~---------~~l~~L~~L~l--~~~~l~~  157 (188)
                      |.+.         ...++|++|++  ++|.+.+
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~  137 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGN  137 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence            8774         56678999999  8898885

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.71  E-value=3e-05  Score=55.37  Aligned_cols=88  Identities=10%  Similarity=0.049  Sum_probs=62.2

Q ss_pred             cceecEEEEcccccccccc-cccccCCCCccEEeecCc-cCcc-cchhhhcC----CCCcEEEccCCCCCccCCCccccc
Q 047302           47 GTSVGTSIVGNCYKRIANL-ERFWGSMKSLTMLILDGT-AIRE-LPLSVEYL----TGLFVLNFKDWQNLECLPSPISEN  119 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l-~~~~~~l~~L~~L~l~~~-~i~~-lp~~~~~l----~~L~~L~l~~~~~l~~l~~~~~~~  119 (188)
                      -..|+.+|+++| . +... -..+.++++|+.|++++| .+.+ --..+..+    ++|++|++++|..++..  . -..
T Consensus        60 ~~~L~~LDLs~~-~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~--G-l~~  134 (176)
T 3e4g_A           60 KYKIQAIDATDS-C-IMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK--G-IIA  134 (176)
T ss_dssp             CCCEEEEEEESC-C-CCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH--H-HHH
T ss_pred             CceEeEEeCcCC-C-ccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH--H-HHH
Confidence            347999999998 5 5332 134478999999999999 4652 22345543    47999999999755432  1 134


Q ss_pred             cCCCCcccEEEccCCc-cccc
Q 047302          120 LGKVDSLEELDISGTA-IRQL  139 (188)
Q Consensus       120 l~~l~~L~~L~l~~~~-i~~~  139 (188)
                      +..+++|+.|++++|. +++.
T Consensus       135 L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             GGGCTTCCEEEEESCTTCCCH
T ss_pred             HhcCCCCCEEECCCCCCCCch
Confidence            5778999999999985 6553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.66  E-value=2.7e-05  Score=59.34  Aligned_cols=76  Identities=22%  Similarity=0.302  Sum_probs=56.0

Q ss_pred             cCCCCccEEeecCccCcccc---hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCcccc--------
Q 047302           70 GSMKSLTMLILDGTAIRELP---LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQ--------  138 (188)
Q Consensus        70 ~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~--------  138 (188)
                      .++++|+.|++++|++..++   ..+..+++|+.|++++|. +..+. .+ ..+..+ +|++|++.+|++.+        
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~-~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y  242 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSER-EL-DKIKGL-KLEELWLDGNSLCDTFRDQSTY  242 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSGG-GG-GGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCch-hh-hhcccC-CcceEEccCCcCccccCcchhH
Confidence            46788999999999887654   456788999999999987 55441 11 223334 88999999998874        


Q ss_pred             ----cCCCCCCCEec
Q 047302          139 ----LSRLCSLTKWD  149 (188)
Q Consensus       139 ----~~~l~~L~~L~  149 (188)
                          +..+++|+.||
T Consensus       243 ~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          243 ISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHHHCTTCCEES
T ss_pred             HHHHHHHCcccCeEC
Confidence                16788888886

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.59  E-value=2.9e-05  Score=61.74  Aligned_cols=115  Identities=12%  Similarity=0.042  Sum_probs=75.2

Q ss_pred             cceecEEEEccccccccc-ccccc--cCCCCccEEeecCc--c------Ccccchhh--hcCCCCcEEEccCCCCCcc-C
Q 047302           47 GTSVGTSIVGNCYKRIAN-LERFW--GSMKSLTMLILDGT--A------IRELPLSV--EYLTGLFVLNFKDWQNLEC-L  112 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~-l~~~~--~~l~~L~~L~l~~~--~------i~~lp~~~--~~l~~L~~L~l~~~~~l~~-l  112 (188)
                      +++|+.|++..|  .+.. ....+  ..+++|++|+++.+  .      +..+.+.+  ..+++|++|++.+|. +.. .
T Consensus       192 ~~~L~~L~L~~~--~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~  268 (362)
T 2ra8_A          192 RPNLKSLEIISG--GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVV  268 (362)
T ss_dssp             CTTCSEEEEECS--BCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHH
T ss_pred             CCCCcEEEEecC--CCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHH
Confidence            678999999875  4422 11222  36889999998631  1      22332222  357999999999886 321 1


Q ss_pred             CCccccccCCCCcccEEEccCCccccc---------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302          113 PSPISENLGKVDSLEELDISGTAIRQL---------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL  171 (188)
Q Consensus       113 ~~~~~~~l~~l~~L~~L~l~~~~i~~~---------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~  171 (188)
                      ...+ .....+++|+.|+++.|.+.+.         ..+++|+.|++++|.+.+      ..+..+..
T Consensus       269 ~~~l-a~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d------~~~~~l~~  329 (362)
T 2ra8_A          269 VEMF-LESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD------EMKKELQK  329 (362)
T ss_dssp             HHHH-HHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH------HHHHHHHH
T ss_pred             HHHH-HhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH------HHHHHHHH
Confidence            1111 1113578999999999988773         457899999999998774      44555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.09  E-value=0.00053  Score=49.76  Aligned_cols=108  Identities=20%  Similarity=0.123  Sum_probs=71.6

Q ss_pred             ccceecEEEEcccccccc-----cccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCCCCCccC-CC
Q 047302           46 YGTSVGTSIVGNCYKRIA-----NLERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDWQNLECL-PS  114 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-~~  114 (188)
                      .-+.|+.|+++++ +.+.     .+.+.+..-++|+.|+|++|++.     .+-..+..-+.|++|++++|. +..- ..
T Consensus        39 ~n~~L~~L~L~~n-n~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig~~Ga~  116 (197)
T 1pgv_A           39 DDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA  116 (197)
T ss_dssp             TCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred             cCCCccEEECCCC-CCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CCHHHHH
Confidence            4568888999873 3552     35556666678999999999884     344556777889999999887 3211 11


Q ss_pred             ccccccCCCCcccEEEccCCc---cccc---------CCCCCCCEeccCCCCC
Q 047302          115 PISENLGKVDSLEELDISGTA---IRQL---------SRLCSLTKWDLSDCNL  155 (188)
Q Consensus       115 ~~~~~l~~l~~L~~L~l~~~~---i~~~---------~~l~~L~~L~l~~~~l  155 (188)
                      .+.+.+..-+.|+.|+++++.   +.+.         ..-++|+.|+++.+.+
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            123445666778999997653   3322         4446788888876653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.84  E-value=0.0048  Score=49.53  Aligned_cols=57  Identities=12%  Similarity=0.138  Sum_probs=25.3

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKD  105 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~  105 (188)
                      ++.+|+.++++.  +.+..++...-...+|+.+.+..+ +..++. .+..+.+|+.+.+..
T Consensus       178 ~c~~L~~l~l~~--n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          178 YCYNLKKADLSK--TKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             TCTTCCEEECTT--SCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             CcccCCeeecCC--CcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            455566666655  344444432222344444444422 333322 244445555555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.37  E-value=0.019  Score=46.01  Aligned_cols=83  Identities=13%  Similarity=0.172  Sum_probs=51.2

Q ss_pred             cccCCCCccEEeecCccCc-----ccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc--
Q 047302           68 FWGSMKSLTMLILDGTAIR-----ELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL--  139 (188)
Q Consensus        68 ~~~~l~~L~~L~l~~~~i~-----~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~--  139 (188)
                      .+.++.+|+.+.+.++.+.     .++ ..+..+.+|+.+.+..+  +..+..   ..+..+.+|+.+.+..+ ++.+  
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~---~aF~~c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ---GLLGGNRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT---TTTTTCCSCCEEEECTT-CCEECT
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh---hhhcCCCCccEEEECcc-ccEEcH
Confidence            4466677777777666543     343 24666777777777642  444432   23566778888887544 4433  


Q ss_pred             ---CCCCCCCEeccCCCCCCC
Q 047302          140 ---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       140 ---~~l~~L~~L~l~~~~l~~  157 (188)
                         ..+ +|+.+++..|.+..
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCB
T ss_pred             HhCCCC-CCCEEEEcCCCCcc
Confidence               455 78888888876554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.33  E-value=0.0021  Score=46.65  Aligned_cols=89  Identities=9%  Similarity=0.074  Sum_probs=65.0

Q ss_pred             ccccccCCCCccEEeecCc-cCc-----ccchhhhcCCCCcEEEccCCCCCccC-CCccccccCCCCcccEEEccCCccc
Q 047302           65 LERFWGSMKSLTMLILDGT-AIR-----ELPLSVEYLTGLFVLNFKDWQNLECL-PSPISENLGKVDSLEELDISGTAIR  137 (188)
Q Consensus        65 l~~~~~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~l~~l~~L~~L~l~~~~i~  137 (188)
                      +...+..-+.|++|+++++ +|.     .+-..+..-+.|+.|++++|. +... ...+.+.+..-+.|+.|++.+|.|.
T Consensus        33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            4444466678999999986 774     344567778999999999997 4321 1223445556688999999999998


Q ss_pred             cc---------CCCCCCCEeccCCCC
Q 047302          138 QL---------SRLCSLTKWDLSDCN  154 (188)
Q Consensus       138 ~~---------~~l~~L~~L~l~~~~  154 (188)
                      +.         ..-++|+.|+|++|.
T Consensus       112 ~~Ga~ala~aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          112 PELLARLLRSTLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HHHHHHHHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHHHHHHhhCCceeEEECCCCc
Confidence            76         455679999998763

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.18  E-value=0.0087  Score=40.23  Aligned_cols=52  Identities=19%  Similarity=0.269  Sum_probs=36.1

Q ss_pred             EEEEcccccccc--cccccccCCCCccEEeecCccCcccchh-hhcCCCCcEEEccCCC
Q 047302           52 TSIVGNCYKRIA--NLERFWGSMKSLTMLILDGTAIRELPLS-VEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        52 ~L~l~~~~~~i~--~l~~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~  107 (188)
                      .++.++  +.++  .+|..+  ..+++.|+|++|+|..+|.. +..+++|+.+++.+|.
T Consensus        12 ~v~Cs~--~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGR--RGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCS--SCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCC--CCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            456666  5666  677432  23688888888888877654 5667888888888875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.10  E-value=0.012  Score=39.55  Aligned_cols=56  Identities=18%  Similarity=0.241  Sum_probs=34.5

Q ss_pred             cEEeecCccCc--ccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccc
Q 047302           76 TMLILDGTAIR--ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIR  137 (188)
Q Consensus        76 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~  137 (188)
                      ..++-++++++  .+|..+.  .+++.|++++|. +..++.   ..+..+++|+.|++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~---~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPP---GLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCT---TTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccCh---hhhhhccccCEEEecCCCee
Confidence            35566666666  6664322  457777777776 666652   23456667777777777553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.44  E-value=0.084  Score=41.82  Aligned_cols=98  Identities=12%  Similarity=0.193  Sum_probs=51.0

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      ++..|+.+.+..  .. ..+. ..+.++..|+.+.+. +.+..++. .+..+.+|+.+.+..+  ++++..   ..+..+
T Consensus       263 ~c~~L~~i~lp~--~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~---~aF~~C  333 (394)
T 4gt6_A          263 SCAYLASVKMPD--SV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILD---DAFAGC  333 (394)
T ss_dssp             TCSSCCEEECCT--TC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECT---TTTTTC
T ss_pred             ecccccEEeccc--cc-ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehH---hHhhCC
Confidence            455566666543  22 2222 233556666666664 33444543 3555667777766543  344431   224566


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCC
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDC  153 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~  153 (188)
                      .+|+.+.+..+ ++.+     ..+++|+.+++.++
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            66776666433 3332     56666766666544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.97  E-value=0.088  Score=41.70  Aligned_cols=102  Identities=13%  Similarity=0.162  Sum_probs=67.1

Q ss_pred             cccceecEEEEcccccccccccc-cccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           45 TYGTSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        45 ~~l~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      .++..|+.+.+..   .+..+++ .+.++.+|+.+.+..+ ++.+.. .+..+.+|+.+.+..+  ++++..   ..+..
T Consensus       285 ~~c~~L~~i~l~~---~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~---~aF~~  355 (394)
T 4gt6_A          285 MNCPALQDIEFSS---RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS--VTKIPE---SAFSN  355 (394)
T ss_dssp             TTCTTCCEEECCT---TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT--CCBCCG---GGGTT
T ss_pred             ccccccccccCCC---cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc--cCEEhH---hHhhC
Confidence            3678899998864   5666663 5678899999999864 666643 5788999999999764  555542   34688


Q ss_pred             CCcccEEEccCCcccc--cCCCCCCCEeccCCCCC
Q 047302          123 VDSLEELDISGTAIRQ--LSRLCSLTKWDLSDCNL  155 (188)
Q Consensus       123 l~~L~~L~l~~~~i~~--~~~l~~L~~L~l~~~~l  155 (188)
                      +.+|+.+++.++....  ......|+.+.+..+.+
T Consensus       356 C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          356 CTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred             CCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence            9999999998875432  25556787777665543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=94.17  E-value=0.32  Score=38.08  Aligned_cols=75  Identities=11%  Similarity=0.169  Sum_probs=35.9

Q ss_pred             cCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCC
Q 047302           70 GSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLC  143 (188)
Q Consensus        70 ~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~  143 (188)
                      .++..++.+.+..+ +..++. .+..+.+|+.+.+.++. ++.+..   ..+..+.+|+.+.+..+ ++.+     .+++
T Consensus       260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~-i~~I~~---~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~  333 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSA-IETLEP---RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK  333 (379)
T ss_dssp             TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTT-CCEECT---TTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ceeehhcccccccc-ceeccccccccccccccccccccc-cceehh---hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence            44455555555432 333332 24555666666665543 444431   22455666666666432 2222     4445


Q ss_pred             CCCEecc
Q 047302          144 SLTKWDL  150 (188)
Q Consensus       144 ~L~~L~l  150 (188)
                      +|+.+.+
T Consensus       334 ~L~~i~i  340 (379)
T 4h09_A          334 ALSTISY  340 (379)
T ss_dssp             TCCCCCC
T ss_pred             CCCEEEE
Confidence            5555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.73  E-value=0.42  Score=37.73  Aligned_cols=56  Identities=14%  Similarity=0.168  Sum_probs=28.1

Q ss_pred             hhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCC
Q 047302           92 VEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDC  153 (188)
Q Consensus        92 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~  153 (188)
                      +..+.+|+.+.+..+  ++.+..   ..+..+.+|+.+++..+ ++.+     ..+++|+.+++..+
T Consensus       293 F~~~~~L~~i~l~~~--i~~I~~---~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS--VKFIGE---EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTCTTCCEEEECTT--CCEECT---TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             ccccccccccccccc--cceech---hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            334555555555442  333321   22455666666666432 3333     45566666666544

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=92.50  E-value=0.18  Score=42.01  Aligned_cols=56  Identities=16%  Similarity=0.086  Sum_probs=40.6

Q ss_pred             hhHHHHHHHHHhCC-CCceeeEEEecCCCCChhhHhhhhhh----ccCcccceecEEEEcc
Q 047302            2 DSHLEKLTILMDKG-PNDVRMIGICDMGGIGKVALAKIVSR----DHGTYGTSVGTSIVGN   57 (188)
Q Consensus         2 ~~~~~~~~~l~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~   57 (188)
                      +..++++..++... ..+..++.++||+|+||+++|..+++    .....+...-+++++.
T Consensus       134 ~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~  194 (549)
T 2a5y_B          134 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG  194 (549)
T ss_dssp             HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCC
T ss_pred             hHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECC
Confidence            45677888776554 34679999999999999999999885    3333455555566665

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.93  E-value=0.35  Score=37.80  Aligned_cols=80  Identities=14%  Similarity=0.140  Sum_probs=56.6

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      ++.+|+.+.+..   .+..++ ..+.++.+|+.+.+.++.++.++. .+.++.+|+.+.+..+  ++.+..   ..+..+
T Consensus       261 ~~~~l~~i~l~~---~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~---~aF~~C  332 (379)
T 4h09_A          261 NCTALKTLNFYA---KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQV---YAFKNC  332 (379)
T ss_dssp             TCTTCCEEEECC---CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECT---TTTTTC
T ss_pred             eeehhccccccc---cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHH---HHhhCC
Confidence            455566666643   344444 355788999999999998988864 5788999999999764  555542   235778


Q ss_pred             CcccEEEccC
Q 047302          124 DSLEELDISG  133 (188)
Q Consensus       124 ~~L~~L~l~~  133 (188)
                      .+|+.+.+..
T Consensus       333 ~~L~~i~ip~  342 (379)
T 4h09_A          333 KALSTISYPK  342 (379)
T ss_dssp             TTCCCCCCCT
T ss_pred             CCCCEEEECC
Confidence            8898887743

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=90.01  E-value=0.63  Score=36.68  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=59.5

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      .+..++......  ..+.  ...+..+.+|+.+.+..+ ++.++. .+..+.+|+.+.+..+  ++++..   ..+..+.
T Consensus       274 ~~~~l~~~~~~~--~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~---~aF~~c~  343 (394)
T 4fs7_A          274 NCSGLKKVIYGS--VIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGK---RSFRGCT  343 (394)
T ss_dssp             TCTTCCEEEECS--SEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECT---TTTTTCT
T ss_pred             cccccceeccCc--eeec--cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhH---HhccCCC
Confidence            455666666554  2221  123466778888888654 555543 4677888888888653  455532   2356788


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCC
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSD  152 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~  152 (188)
                      +|+.+++..+ ++.+     ..+++|+.+++..
T Consensus       344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          344 SLSNINFPLS-LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred             CCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence            8888888655 4433     6677788877643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=85.26  E-value=0.98  Score=40.76  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=34.3

Q ss_pred             hhHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhc
Q 047302            2 DSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRD   42 (188)
Q Consensus         2 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   42 (188)
                      +..++++..++....+..+.+.++||+|+||++++..++..
T Consensus       130 ~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~  170 (1249)
T 3sfz_A          130 KKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD  170 (1249)
T ss_dssp             HHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence            46788888888766678899999999999999999876654

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=83.07  E-value=1.5  Score=36.40  Aligned_cols=40  Identities=23%  Similarity=0.266  Sum_probs=32.1

Q ss_pred             hhHHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhh
Q 047302            2 DSHLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSR   41 (188)
Q Consensus         2 ~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   41 (188)
                      +..+.++...+....++.+.+.++|++|+||++++..++.
T Consensus       130 ~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          130 KKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             HHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            4567778877776556678999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	188
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	0.001

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 1  MDSHLEKL-TILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDH 43
           + H++++   L +    D   + +    G GK  +A       
Sbjct: 25 REYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKS 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	188
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.56
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.45
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.43
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.37
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.31
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.29
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.25
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.21
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.15
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.13
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.12
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.12
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.11
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.1
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.08
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.07
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.05
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.03
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.0
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.93
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.84
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.8
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.76
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.69
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.63
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.55
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.18
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.93
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.75
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.26
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.25
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.85

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=1.4e-14  Score=97.13  Aligned_cols=98  Identities=22%  Similarity=0.214  Sum_probs=83.9

Q ss_pred             cEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEE
Q 047302           51 GTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELD  130 (188)
Q Consensus        51 ~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~  130 (188)
                      |+|++++  +.++.++. +..+.+|++|++++|++..+|+.+..+++|++|++++|. +..++     .+..+++|++++
T Consensus         1 R~L~Ls~--n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~-----~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAH--KDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-----GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTT--SCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-----GGTTCSSCCEEE
T ss_pred             CEEEcCC--CCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccC-----ccccccccCeEE
Confidence            5789998  78888875 588999999999999999998889999999999999997 66652     468899999999


Q ss_pred             ccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          131 ISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       131 l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      +++|.++++      ..+++|+.|++++|.+..
T Consensus        72 l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          72 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             CCCCccCCCCCchhhcCCCCCCEEECCCCcCCc
Confidence            999988765      677889999999998875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2e-14  Score=100.66  Aligned_cols=105  Identities=15%  Similarity=0.124  Sum_probs=88.1

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ++..+++|++++  +.++.++.....+++|+.|++++|++..++ .+..+++|+.|++++|. +..++..   .+..+++
T Consensus        16 n~~~lr~L~L~~--n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~-i~~l~~~---~~~~l~~   88 (162)
T d1a9na_          16 NAVRDRELDLRG--YKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNR-ICRIGEG---LDQALPD   88 (162)
T ss_dssp             CTTSCEEEECTT--SCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSC-CCEECSC---HHHHCTT
T ss_pred             CcCcCcEEECCC--CCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhccccc-ccCCCcc---ccccccc
Confidence            567899999999  688888876678899999999999999886 68889999999999997 7766432   2356889


Q ss_pred             ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.|++++|.++++      ..+++|++|++++|.+++
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             cccceeccccccccccccccccccccchhhcCCCcccc
Confidence            99999999988765      678899999999998887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-13  Score=102.40  Aligned_cols=105  Identities=26%  Similarity=0.309  Sum_probs=59.5

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|++|++++  +.++.++.. ..+++|++|++++|++...+..+..+++|+.++++++. +.+++.   ..+..+.+
T Consensus        53 ~l~~L~~L~L~~--N~l~~l~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~-~~~~~~---~~~~~l~~  125 (266)
T d1p9ag_          53 PYTRLTQLNLDR--AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPL---GALRGLGE  125 (266)
T ss_dssp             TCTTCCEEECTT--SCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCS---STTTTCTT
T ss_pred             cccccccccccc--ccccccccc-cccccccccccccccccccccccccccccccccccccc-cceeec---cccccccc
Confidence            567777777777  566666643 56777777777777776666666667777777777665 333321   11233344


Q ss_pred             ccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      ++.+++.+|.++.+     ..+++++.+++++|+++.
T Consensus       126 l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_         126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             cccccccccccceeccccccccccchhcccccccccc
Confidence            44444444444333     234445555555554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.43  E-value=5.5e-13  Score=102.11  Aligned_cols=137  Identities=15%  Similarity=0.242  Sum_probs=88.3

Q ss_pred             ccceecEEEEccccccc-ccccccccCCCCccEEeecCccCccc-c------------------------hhhhcCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRI-ANLERFWGSMKSLTMLILDGTAIREL-P------------------------LSVEYLTGLF   99 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i-~~l~~~~~~l~~L~~L~l~~~~i~~l-p------------------------~~~~~l~~L~   99 (188)
                      .+++|++|++++| +.+ ..+|..+.++++|++|++++|++..+ +                        ..+..++.++
T Consensus        74 ~L~~L~~L~Ls~~-N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          74 NLPYLNFLYIGGI-NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GCTTCSEEEEEEE-TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             cCccccccccccc-cccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            6899999999876 665 47888889999999999999887532 3                        3344445555


Q ss_pred             EEEccCCCCCccCCCcc--------------------------------------------ccccCCCCcccEEEccCCc
Q 047302          100 VLNFKDWQNLECLPSPI--------------------------------------------SENLGKVDSLEELDISGTA  135 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~--------------------------------------------~~~l~~l~~L~~L~l~~~~  135 (188)
                      .+++++|.....+|..+                                            |..++.+++++.+++.++.
T Consensus       153 ~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             eeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55555443111122111                                            3333445555555555555


Q ss_pred             cccc----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------h-hcCCCCchhhhccc
Q 047302          136 IRQL----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------F-KDEPESNSQIRRNV  187 (188)
Q Consensus       136 i~~~----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~-~~lp~~~~~l~~L~  187 (188)
                      +...    ..+++|+.|++++|+++   +.+|..++++++|         + +.+|+ ++++.+|+
T Consensus       233 l~~~~~~~~~~~~L~~L~Ls~N~l~---g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~  294 (313)
T d1ogqa_         233 LAFDLGKVGLSKNLNGLDLRNNRIY---GTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFD  294 (313)
T ss_dssp             ECCBGGGCCCCTTCCEEECCSSCCE---ECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSC
T ss_pred             ccccccccccccccccccCccCeec---ccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCC
Confidence            4332    56778899999999988   3488888888777         3 36775 56666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=6.3e-13  Score=88.84  Aligned_cols=97  Identities=19%  Similarity=0.162  Sum_probs=82.3

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|++|++++  |.++.+|..+..+++|+.|++++|.++.+| .+..+++|+++++++|. +..++.  ...++.+++
T Consensus        18 ~l~~L~~L~ls~--N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~-i~~~~~--~~~l~~~~~   91 (124)
T d1dcea3          18 QLLLVTHLDLSH--NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAA--IQPLVSCPR   91 (124)
T ss_dssp             GGTTCCEEECCS--SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSST--TGGGGGCTT
T ss_pred             cCCCCCEEECCC--CccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc-cCCCCC--chhhcCCCC
Confidence            688999999999  799999988899999999999999999987 68999999999999997 766643  135688999


Q ss_pred             ccEEEccCCccccc--------CCCCCCCEe
Q 047302          126 LEELDISGTAIRQL--------SRLCSLTKW  148 (188)
Q Consensus       126 L~~L~l~~~~i~~~--------~~l~~L~~L  148 (188)
                      |+.+++++|++.+.        ..+|+|+.+
T Consensus        92 L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          92 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            99999999998765        345666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.37  E-value=1.3e-12  Score=94.02  Aligned_cols=146  Identities=16%  Similarity=0.264  Sum_probs=100.6

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF   99 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~   99 (188)
                      ..+..+.+.+.+-..+..     + ..+++|++|++++  +.+..++. +.++++|++|++++|.+..++ .+..++.|+
T Consensus        40 ~~l~~L~l~~~~i~~l~~-----l-~~l~nL~~L~Ls~--N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~  109 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDG-----V-EYLNNLTQINFSN--NQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLT  109 (199)
T ss_dssp             TTCCEEECTTSCCCCCTT-----G-GGCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred             cCCCEEECCCCCCCCccc-----c-ccCCCcCcCcccc--ccccCccc-ccCCccccccccccccccccc-ccccccccc
Confidence            345556666554333321     1 1588999999998  57777765 588999999999999888877 478889999


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh----
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL----  172 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L----  172 (188)
                      .++++++. ....     +.+..+++|+.+++++|.+..+   ..+++|+.|++.+|++++    ++ .++.+++|    
T Consensus       110 ~L~l~~~~-~~~~-----~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~----l~-~l~~l~~L~~L~  178 (199)
T d2omxa2         110 GLTLFNNQ-ITDI-----DPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD----LK-PLANLTTLERLD  178 (199)
T ss_dssp             EEECCSSC-CCCC-----GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC----CG-GGTTCTTCCEEE
T ss_pred             cccccccc-cccc-----cccchhhhhHHhhhhhhhhcccccccccccccccccccccccC----Cc-cccCCCCCCEEE
Confidence            99998876 3322     3456778888888888877665   667778888888887776    44 35555555    


Q ss_pred             -----hhcCCCCchhhhccc
Q 047302          173 -----FKDEPESNSQIRRNV  187 (188)
Q Consensus       173 -----~~~lp~~~~~l~~L~  187 (188)
                           +..+| .+..+++|+
T Consensus       179 ls~N~i~~i~-~l~~L~~L~  197 (199)
T d2omxa2         179 ISSNKVSDIS-VLAKLTNLE  197 (199)
T ss_dssp             CCSSCCCCCG-GGGGCTTCS
T ss_pred             CCCCCCCCCc-cccCCCCCC
Confidence                 33444 355565554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.9e-12  Score=93.97  Aligned_cols=122  Identities=20%  Similarity=0.301  Sum_probs=86.4

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF   99 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~   99 (188)
                      ..+..+.+.+++-..+.. +     ..+++|++|++++  +.++.++. +..+++|++|++++|+++.+| .+..+++|+
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l-----~~l~~L~~L~L~~--n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~  115 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-I-----QYLPNVTKLFLNG--NKLTDIKP-LANLKNLGWLFLDENKVKDLS-SLKDLKKLK  115 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-G-----GGCTTCCEEECCS--SCCCCCGG-GTTCTTCCEEECCSSCCCCGG-GGTTCTTCC
T ss_pred             cCccEEECcCCCCCCchh-H-----hhCCCCCEEeCCC--ccccCccc-cccCccccccccccccccccc-ccccccccc
Confidence            345556666554333321 1     1588999999999  67877775 478899999999999998887 688899999


Q ss_pred             EEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          100 VLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      .+++++|. +..+     ..+..+++++.+++++|.+++.   ..+++|+.+++++|++++
T Consensus       116 ~L~l~~~~-~~~~-----~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~  170 (210)
T d1h6ta2         116 SLSLEHNG-ISDI-----NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD  170 (210)
T ss_dssp             EEECTTSC-CCCC-----GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC
T ss_pred             cccccccc-cccc-----ccccccccccccccccccccccccccccccccccccccccccc
Confidence            99998886 4333     2345666777777777766554   566677777777776665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.6e-12  Score=95.54  Aligned_cols=139  Identities=21%  Similarity=0.222  Sum_probs=100.1

Q ss_pred             ceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccc-hhhhcCC
Q 047302           18 DVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP-LSVEYLT   96 (188)
Q Consensus        18 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~   96 (188)
                      ++..|..+++.+..-.++.    .  ...+++|++|++++  +.+...+..+..+++|+.|+++++.+..++ ..+..+.
T Consensus        53 ~l~~L~~L~L~~N~l~~l~----~--~~~l~~L~~L~Ls~--N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  124 (266)
T d1p9ag_          53 PYTRLTQLNLDRAELTKLQ----V--DGTLPVLGTLDLSH--NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLG  124 (266)
T ss_dssp             TCTTCCEEECTTSCCCEEE----C--CSCCTTCCEEECCS--SCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCT
T ss_pred             ccccccccccccccccccc----c--cccccccccccccc--ccccccccccccccccccccccccccceeecccccccc
Confidence            3444555555554322221    1  12688999999999  678777777788899999999999887664 3466788


Q ss_pred             CCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302           97 GLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL  171 (188)
Q Consensus        97 ~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~  171 (188)
                      +++.+++++|. +..++.   ..+..+++++.+++++|.++..     ..+++|++|++++|.++.    +|..+..+++
T Consensus       125 ~l~~L~l~~n~-l~~l~~---~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~----lp~~~~~~~~  196 (266)
T d1p9ag_         125 ELQELYLKGNE-LKTLPP---GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT----IPKGFFGSHL  196 (266)
T ss_dssp             TCCEEECTTSC-CCCCCT---TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCC
T ss_pred             ccccccccccc-cceecc---ccccccccchhcccccccccccCccccccccccceeecccCCCcc----cChhHCCCCC
Confidence            88999988886 666652   3346678888888888887766     567788888888888887    7777666555


Q ss_pred             h
Q 047302          172 L  172 (188)
Q Consensus       172 L  172 (188)
                      |
T Consensus       197 L  197 (266)
T d1p9ag_         197 L  197 (266)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.3e-12  Score=89.96  Aligned_cols=101  Identities=19%  Similarity=0.181  Sum_probs=82.0

Q ss_pred             ccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-
Q 047302           61 RIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-  139 (188)
Q Consensus        61 ~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-  139 (188)
                      .+...|.. .++.++++|++++|+|..+|.....+++|++|++++|. +.++     +.+..+++|+.|++++|.++.+ 
T Consensus         7 ~i~~~~~~-~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l-----~~~~~l~~L~~L~ls~N~i~~l~   79 (162)
T d1a9na_           7 LIEQAAQY-TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKL-----DGFPLLRRLKTLLVNNNRICRIG   79 (162)
T ss_dssp             HHHTSCEE-ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEE-----CCCCCCSSCCEEECCSSCCCEEC
T ss_pred             HHhhhHhc-cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCC-CCcc-----CCcccCcchhhhhcccccccCCC
Confidence            34445544 56778999999999999998666789999999999997 7766     2458899999999999999887 


Q ss_pred             ----CCCCCCCEeccCCCCCCCCCCCCCh--hhHHHhhh
Q 047302          140 ----SRLCSLTKWDLSDCNLPVEGGEIPR--DICYLCLL  172 (188)
Q Consensus       140 ----~~l~~L~~L~l~~~~l~~~~~~lp~--~l~~l~~L  172 (188)
                          ..+++|+.|++++|++++    ++.  .+..+++|
T Consensus        80 ~~~~~~l~~L~~L~L~~N~i~~----~~~l~~l~~l~~L  114 (162)
T d1a9na_          80 EGLDQALPDLTELILTNNSLVE----LGDLDPLASLKSL  114 (162)
T ss_dssp             SCHHHHCTTCCEEECCSCCCCC----GGGGGGGGGCTTC
T ss_pred             ccccccccccccceeccccccc----ccccccccccccc
Confidence                468899999999999987    553  45555655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=1.2e-11  Score=88.80  Aligned_cols=132  Identities=19%  Similarity=0.263  Sum_probs=101.6

Q ss_pred             eeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCC
Q 047302           19 VRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGL   98 (188)
Q Consensus        19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L   98 (188)
                      ++.+..++++++.-..+..     + ..+++|+.+++++  +.+..++. +.++++|+.++++++.+..++ .+..+++|
T Consensus        61 l~nL~~L~Ls~N~l~~~~~-----l-~~l~~L~~L~l~~--n~~~~~~~-l~~l~~L~~L~l~~~~~~~~~-~~~~l~~L  130 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDITP-----L-KNLTKLVDILMNN--NQIADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNL  130 (199)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----G-TTCTTCCEEECCS--SCCCCCGG-GTTCTTCSEEECCSSCCCCCG-GGTTCTTC
T ss_pred             CCCcCcCccccccccCccc-----c-cCCcccccccccc--cccccccc-ccccccccccccccccccccc-ccchhhhh
Confidence            3455666666644333321     1 2689999999999  57777765 588999999999999887765 57889999


Q ss_pred             cEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302           99 FVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL  171 (188)
Q Consensus        99 ~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~  171 (188)
                      +.+++++|. +..+     +.+..+++++.|++.+|.++++   ..+++|++|++++|++++    ++ .++++++
T Consensus       131 ~~L~l~~n~-l~~~-----~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~----i~-~l~~L~~  195 (199)
T d2omxa2         131 NRLELSSNT-ISDI-----SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD----IS-VLAKLTN  195 (199)
T ss_dssp             SEEECCSSC-CCCC-----GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC----CG-GGGGCTT
T ss_pred             HHhhhhhhh-hccc-----ccccccccccccccccccccCCccccCCCCCCEEECCCCCCCC----Cc-cccCCCC
Confidence            999999997 5543     3468899999999999998876   789999999999999987    54 3454443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=2.1e-11  Score=87.09  Aligned_cols=104  Identities=13%  Similarity=0.218  Sum_probs=88.6

Q ss_pred             ceecEEEEccccccccc-cc-ccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           48 TSVGTSIVGNCYKRIAN-LE-RFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~-l~-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      +++++|++++  |.+.. ++ ..+.++++|+.|++++|.+..++ ..+..+++|+.|++++|+ +..++   |..+..++
T Consensus        29 ~~l~~L~Ls~--N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~---~~~F~~l~  102 (192)
T d1w8aa_          29 LHTTELLLND--NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEIS---NKMFLGLH  102 (192)
T ss_dssp             TTCSEEECCS--CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEEC---SSSSTTCT
T ss_pred             CCCCEEEeCC--CCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccC---HHHHhCCC
Confidence            5889999999  78854 43 45688999999999999998664 567889999999999997 77775   34578899


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCCCCC
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~  157 (188)
                      +|++|++++|.++.+     ..+++|+++++++|.+..
T Consensus       103 ~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         103 QLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             cccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            999999999999887     678899999999998875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=1.9e-11  Score=88.57  Aligned_cols=133  Identities=16%  Similarity=0.214  Sum_probs=102.6

Q ss_pred             eeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCC
Q 047302           19 VRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGL   98 (188)
Q Consensus        19 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L   98 (188)
                      +..+..+++.++.-..+..     + ..+++|+++++++  +.++.++. +..+++|+.++++++.+..++ .+..++.+
T Consensus        67 l~~L~~L~L~~n~i~~l~~-----~-~~l~~L~~L~l~~--n~i~~l~~-l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l  136 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIKP-----L-ANLKNLGWLFLDE--NKVKDLSS-LKDLKKLKSLSLEHNGISDIN-GLVHLPQL  136 (210)
T ss_dssp             CTTCCEEECCSSCCCCCGG-----G-TTCTTCCEEECCS--SCCCCGGG-GTTCTTCCEEECTTSCCCCCG-GGGGCTTC
T ss_pred             CCCCCEEeCCCccccCccc-----c-ccCcccccccccc--cccccccc-ccccccccccccccccccccc-cccccccc
Confidence            3456666666654333321     1 2689999999999  67888875 588999999999999988776 68889999


Q ss_pred             cEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302           99 FVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus        99 ~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +.+++++|. +...     .....+++|+.+++++|.++++   ..+++|+.|++++|.+++    +| .+..+++|
T Consensus       137 ~~l~~~~n~-l~~~-----~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~----l~-~l~~l~~L  202 (210)
T d1h6ta2         137 ESLYLGNNK-ITDI-----TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD----LR-ALAGLKNL  202 (210)
T ss_dssp             CEEECCSSC-CCCC-----GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB----CG-GGTTCTTC
T ss_pred             ccccccccc-cccc-----ccccccccccccccccccccccccccCCCCCCEEECCCCCCCC----Ch-hhcCCCCC
Confidence            999999986 5433     3457789999999999998776   788999999999999987    65 35544433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.21  E-value=3.6e-11  Score=91.41  Aligned_cols=58  Identities=22%  Similarity=0.250  Sum_probs=29.5

Q ss_pred             ceecEEEEcccccccccccc-cccCCCCccEEeecCccCccc-chhhhcCCCCcEEEccCCC
Q 047302           48 TSVGTSIVGNCYKRIANLER-FWGSMKSLTMLILDGTAIREL-PLSVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~  107 (188)
                      +++++|++++  +.++.+|+ .+.++++|++|++++|.+..+ |..+..++.|+++++++|+
T Consensus        31 ~~l~~L~Ls~--N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          31 PDTALLDLQN--NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             TTCCEEECCS--SCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECcC--CcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc
Confidence            3455555555  45555543 344555555555555555544 2234555555555555553

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.21  E-value=3.5e-11  Score=87.90  Aligned_cols=137  Identities=19%  Similarity=0.254  Sum_probs=95.7

Q ss_pred             eeEEEecCCCCChhhHhhhhhhccCcccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCc
Q 047302           20 RMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLF   99 (188)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~   99 (188)
                      ..+..+.+.+++-..+.. +     ..+++|+.+++++  +.+..++. +..+.+++++++++|.++.++ .+..+++|+
T Consensus        41 ~~L~~L~l~~~~i~~l~~-l-----~~l~~L~~L~ls~--n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~  110 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEG-V-----QYLNNLIGLELKD--NQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (227)
T ss_dssp             HTCCEEECTTSCCCCCTT-G-----GGCTTCCEEECCS--SCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             CCcCEEECCCCCCCcchh-H-----hcCCCCcEeecCC--ceeecccc-ccccccccccccccccccccc-ccccccccc
Confidence            445666777666444421 1     2689999999999  56766654 588899999999999888776 577889999


Q ss_pred             EEEccCCCCCccCCCcc-----------------ccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCC
Q 047302          100 VLNFKDWQNLECLPSPI-----------------SENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEG  159 (188)
Q Consensus       100 ~L~l~~~~~l~~l~~~~-----------------~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~  159 (188)
                      .+.++++. ......-.                 ...+..+++|+.|++++|.+.+.   ..+++|+.|++++|.+++  
T Consensus       111 ~l~l~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~--  187 (227)
T d1h6ua2         111 TLDLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--  187 (227)
T ss_dssp             EEECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--
T ss_pred             cccccccc-ccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCC--
Confidence            99988875 22111100                 22345667788888888877654   678888888888888876  


Q ss_pred             CCCChhhHHHhhh
Q 047302          160 GEIPRDICYLCLL  172 (188)
Q Consensus       160 ~~lp~~l~~l~~L  172 (188)
                        ++. ++++++|
T Consensus       188 --l~~-l~~l~~L  197 (227)
T d1h6ua2         188 --ISP-LASLPNL  197 (227)
T ss_dssp             --CGG-GGGCTTC
T ss_pred             --Chh-hcCCCCC
Confidence              543 5555555

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.15  E-value=5.6e-13  Score=96.12  Aligned_cols=103  Identities=18%  Similarity=0.137  Sum_probs=87.7

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      .+++|++|++++  +.++.++. +..+++|+.|++++|.+..+|.....++.|++|++++|. +..+     +.+..+++
T Consensus        46 ~L~~L~~L~Ls~--n~I~~i~~-l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~-i~~l-----~~~~~l~~  116 (198)
T d1m9la_          46 TLKACKHLALST--NNIEKISS-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASL-----SGIEKLVN  116 (198)
T ss_dssp             HTTTCCEEECSE--EEESCCCC-HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEE-CCCH-----HHHHHHHH
T ss_pred             cccccceeECcc--cCCCCccc-ccCCccccChhhccccccccccccccccccccccccccc-cccc-----cccccccc
Confidence            588999999999  68888864 688999999999999999998666667889999999997 6544     34577899


Q ss_pred             ccEEEccCCccccc------CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~------~~l~~L~~L~l~~~~l~~  157 (188)
                      |+.|++++|.++++      ..+++|+.|++++|.+..
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCcccc
Confidence            99999999988765      789999999999997764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=1.5e-10  Score=82.47  Aligned_cols=111  Identities=18%  Similarity=0.178  Sum_probs=88.4

Q ss_pred             ecEEEEcccccccccccccccCCCCccEEeecCccCcc-cc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302           50 VGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRE-LP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE  127 (188)
Q Consensus        50 L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~-lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~  127 (188)
                      .+.++.++  +.++.+|..+  ..++++|++++|+|.. ++ ..+..+++|++|++++|. +..++   +..+..+++|+
T Consensus        10 ~~~v~Cs~--~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~---~~~~~~~~~L~   81 (192)
T d1w8aa_          10 GTTVDCTG--RGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIE---PNAFEGASHIQ   81 (192)
T ss_dssp             TTEEECTT--SCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBC---TTTTTTCTTCC
T ss_pred             CCEEEEeC--CCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccc-ccccc---ccccccccccc
Confidence            45678887  7888998754  2689999999999974 53 457899999999999997 65554   34567889999


Q ss_pred             EEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          128 ELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       128 ~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                      .|++++|.++.+     ..+++|+.|+|++|.++.    +|.. +..+++|
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~----i~~~~f~~l~~L  128 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC----VMPGSFEHLNSL  128 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCE----ECTTSSTTCTTC
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccc----cCHHHhcCCccc
Confidence            999999999887     688999999999999997    6553 4444444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1e-10  Score=88.07  Aligned_cols=104  Identities=17%  Similarity=0.202  Sum_probs=51.5

Q ss_pred             cceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCC
Q 047302           47 GTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVD  124 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~  124 (188)
                      ..+|+.+++++  +.++.++ ..+..+.+++.|++++|++..+|+ .+..+++|+++++++|+ +..++   |..+..++
T Consensus       128 ~~~L~~l~l~~--N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~-l~~i~---~~~f~~l~  201 (284)
T d1ozna_         128 LAALQYLYLQD--NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVH---PHAFRDLG  201 (284)
T ss_dssp             CTTCCEEECCS--SCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEEC---TTTTTTCT
T ss_pred             hcccchhhhcc--ccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc-ccccC---hhHhhhhh
Confidence            44455555554  3444443 233444555555555555554432 33445555555555554 33222   33345555


Q ss_pred             cccEEEccCCccccc-----CCCCCCCEeccCCCCCC
Q 047302          125 SLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       125 ~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~  156 (188)
                      +|++|++++|.+...     ..+++|+.|++++|.+.
T Consensus       202 ~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hcccccccccccccccccccccccccCEEEecCCCCC
Confidence            555666655555444     45555666666655554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.12  E-value=3.8e-11  Score=91.63  Aligned_cols=116  Identities=19%  Similarity=0.251  Sum_probs=91.3

Q ss_pred             ceecEEEEcccccccc---cccccccCCCCccEEeecC-ccCc-ccchhhhcCCCCcEEEccCCCCCccCCCccccccCC
Q 047302           48 TSVGTSIVGNCYKRIA---NLERFWGSMKSLTMLILDG-TAIR-ELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGK  122 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~---~l~~~~~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~  122 (188)
                      .+++.|+++++  .+.   .+|..+.++++|++|++++ |++. .+|+.++++++|++|++++|. +...+   +..+..
T Consensus        50 ~~v~~L~L~~~--~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~-l~~~~---~~~~~~  123 (313)
T d1ogqa_          50 YRVNNLDLSGL--NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAI---PDFLSQ  123 (313)
T ss_dssp             CCEEEEEEECC--CCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEEC---CGGGGG
T ss_pred             EEEEEEECCCC--CCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccc-ccccc---cccccc
Confidence            36899999994  543   5788899999999999997 6776 899999999999999999997 55543   344577


Q ss_pred             CCcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          123 VDSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       123 l~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      +.+|+.+++..|.+...     ..++.++.+++++|.+.   +.+|..+..+..+
T Consensus       124 ~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~---~~ip~~~~~l~~l  175 (313)
T d1ogqa_         124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS---GAIPDSYGSFSKL  175 (313)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---EECCGGGGCCCTT
T ss_pred             hhhhcccccccccccccCchhhccCcccceeeccccccc---ccccccccccccc
Confidence            78888888888876543     67788888888888877   3477776665544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.11  E-value=1e-10  Score=89.61  Aligned_cols=60  Identities=23%  Similarity=0.216  Sum_probs=34.1

Q ss_pred             CcccEEEccCCccccc-CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh------hhcCCCCchhhhccc
Q 047302          124 DSLEELDISGTAIRQL-SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL------FKDEPESNSQIRRNV  187 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L------~~~lp~~~~~l~~L~  187 (188)
                      ++|++|++++|.++.+ ..+++|+.|++++|++++    +|..+.+|+.|      +..+|.....+++|+
T Consensus       284 ~~L~~L~Ls~N~l~~lp~~~~~L~~L~L~~N~L~~----l~~~~~~L~~L~L~~N~L~~lp~~~~~L~~L~  350 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPALPPRLERLIASFNHLAE----VPELPQNLKQLHVEYNPLREFPDIPESVEDLR  350 (353)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC----CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEE
T ss_pred             CCCCEEECCCCccCccccccCCCCEEECCCCcCCc----cccccCCCCEEECcCCcCCCCCccccccCeeE
Confidence            4566666666666555 445566666666666665    55544455544      445555444455543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=2e-10  Score=87.14  Aligned_cols=105  Identities=13%  Similarity=0.061  Sum_probs=67.6

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccc-hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP-LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      +++++.++++++ ......+..+..++.+++|++++|++..++ ..+..+++|++|++++|. ++.+    |..+..+++
T Consensus       170 ~~~L~~L~l~~n-~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~-L~~l----p~~l~~l~~  243 (305)
T d1xkua_         170 PPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKV----PGGLADHKY  243 (305)
T ss_dssp             CTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSC----CTTTTTCSS
T ss_pred             CCccCEEECCCC-cCCCCChhHhhccccccccccccccccccccccccccccceeeeccccc-cccc----ccccccccC
Confidence            456666666663 333334455566677777777777777553 345667777777777775 6655    344567777


Q ss_pred             ccEEEccCCccccc-----------CCCCCCCEeccCCCCCCC
Q 047302          126 LEELDISGTAIRQL-----------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       126 L~~L~l~~~~i~~~-----------~~l~~L~~L~l~~~~l~~  157 (188)
                      |++|++++|.|+.+           ..+.+|+.|++++|.++.
T Consensus       244 L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             CCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            77777777776654           244567777777777653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=2.6e-10  Score=88.63  Aligned_cols=130  Identities=17%  Similarity=0.207  Sum_probs=77.5

Q ss_pred             cceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCcc----------
Q 047302           47 GTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPI----------  116 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~----------  116 (188)
                      +.+|+.+++++  +.++.++. +..+++++.+++++|.+..++ .+..+++|+.++++++. +..++...          
T Consensus       218 ~~~L~~L~l~~--n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         218 LTNLDELSLNG--NQLKDIGT-LASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ-ISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             CTTCCEEECCS--SCCCCCGG-GGGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEEC
T ss_pred             cCCCCEEECCC--CCCCCcch-hhcccccchhccccCccCCCC-cccccccCCEeeccCcc-cCCCCccccccccccccc
Confidence            45566666666  34544442 355566666666666665554 35556666666666554 32221100          


Q ss_pred             -------ccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh---------hhcCC
Q 047302          117 -------SENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL---------FKDEP  177 (188)
Q Consensus       117 -------~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L---------~~~lp  177 (188)
                             +..+..+++++.+++++|+++++   ..+++|++|++++|+++.    ++ .+..+++|         +..+|
T Consensus       293 ~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~----l~-~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         293 NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD----VS-SLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC----CG-GGGGCTTCCEEECCSSCCCBCG
T ss_pred             cccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC----Ch-hHcCCCCCCEEECCCCcCCCCh
Confidence                   12345667778888888877765   677888888888888876    44 46666666         44444


Q ss_pred             CCchhhhccc
Q 047302          178 ESNSQIRRNV  187 (188)
Q Consensus       178 ~~~~~l~~L~  187 (188)
                      . +.++++|+
T Consensus       368 ~-l~~l~~L~  376 (384)
T d2omza2         368 P-LANLTRIT  376 (384)
T ss_dssp             G-GTTCTTCS
T ss_pred             h-hccCCCCC
Confidence            3 55555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.3e-10  Score=77.63  Aligned_cols=92  Identities=21%  Similarity=0.181  Sum_probs=40.8

Q ss_pred             ccccccccccCCCCccEEeecCc-cCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCcccc
Q 047302           61 RIANLERFWGSMKSLTMLILDGT-AIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQ  138 (188)
Q Consensus        61 ~i~~l~~~~~~l~~L~~L~l~~~-~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~  138 (188)
                      .+...|..+..++++++|+++++ .++.++. .+..+++|+.|++++|. +..++   |..+..+++|+.|++++|.++.
T Consensus        19 ~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~---~~~f~~l~~L~~L~Ls~N~l~~   94 (156)
T d2ifga3          19 GALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVA---PDAFHFTPRLSRLNLSFNALES   94 (156)
T ss_dssp             CCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEEC---TTGGGSCSCCCEEECCSSCCSC
T ss_pred             CCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcc---cccccccccccceeccCCCCcc
Confidence            33344444444445555555433 2444432 24445555555555543 44332   2223444455555555555444


Q ss_pred             c----CCCCCCCEeccCCCCCC
Q 047302          139 L----SRLCSLTKWDLSDCNLP  156 (188)
Q Consensus       139 ~----~~l~~L~~L~l~~~~l~  156 (188)
                      +    .....|+.|++++|.+.
T Consensus        95 l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          95 LSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCSTTTCSCCCCEEECCSSCCC
T ss_pred             cChhhhccccccccccCCCccc
Confidence            3    11123555555555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.5e-10  Score=84.48  Aligned_cols=117  Identities=20%  Similarity=0.249  Sum_probs=87.8

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch-hhhcCCCCcEEEccCCCCCccCCCccccccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL-SVEYLTGLFVLNFKDWQNLECLPSPISENLGKV  123 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l  123 (188)
                      .+++|++++++.  +.+..++ ..+..+.+|+.+++++|+++.+|+ .+..+++|+.|++++|. +..++   +..+..+
T Consensus       103 ~l~~L~~L~l~~--n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~---~~~f~~l  176 (284)
T d1ozna_         103 GLGRLHTLHLDR--CGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVP---ERAFRGL  176 (284)
T ss_dssp             TCTTCCEEECTT--SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEEC---TTTTTTC
T ss_pred             ccccCCEEecCC--cccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccc---hhhhccc
Confidence            567888888888  4554443 455677888899999998887764 46778889999998886 66664   3445778


Q ss_pred             CcccEEEccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCCh-hhHHHhhh
Q 047302          124 DSLEELDISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPR-DICYLCLL  172 (188)
Q Consensus       124 ~~L~~L~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~-~l~~l~~L  172 (188)
                      ++|+.+++.+|.++..     ..+++|++|++++|.+..    +|. .+..+++|
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~----~~~~~~~~~~~L  227 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA----LPTEALAPLRAL  227 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC----CCHHHHTTCTTC
T ss_pred             cccchhhhhhccccccChhHhhhhhhccccccccccccc----cccccccccccc
Confidence            8899999999887765     677889999999998886    554 34555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=4e-10  Score=82.09  Aligned_cols=112  Identities=18%  Similarity=0.238  Sum_probs=85.8

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ++.+|+.+++++  +.++.++ .+..+++|++|++++|.+..++ .+..+++++.+++++|. ++.+     ..+..+++
T Consensus        39 ~l~~L~~L~l~~--~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~-~~~i-----~~l~~l~~  108 (227)
T d1h6ua2          39 DLDGITTLSAFG--TGVTTIE-GVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNP-LKNV-----SAIAGLQS  108 (227)
T ss_dssp             HHHTCCEEECTT--SCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCC-CSCC-----GGGTTCTT
T ss_pred             HcCCcCEEECCC--CCCCcch-hHhcCCCCcEeecCCceeeccc-ccccccccccccccccc-cccc-----cccccccc
Confidence            578999999999  5788885 4689999999999999998876 48899999999999986 5544     34577888


Q ss_pred             ccEEEccCCccccc-------------------------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          126 LEELDISGTAIRQL-------------------------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~-------------------------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      |+.++++++...+.                         ...++|+.|++++|.+..    .+ .++++++|
T Consensus       109 L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~----~~-~l~~l~~L  175 (227)
T d1h6ua2         109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD----LT-PLANLSKL  175 (227)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC----CG-GGTTCTTC
T ss_pred             ccccccccccccccchhccccchhhhhchhhhhchhhhhcccccccccccccccccc----ch-hhcccccc
Confidence            88888887765443                         455668888888887765    22 34555555

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.00  E-value=7.5e-10  Score=85.92  Aligned_cols=112  Identities=15%  Similarity=0.200  Sum_probs=73.6

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccc---------------------hhhhcCCCCcEEEcc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELP---------------------LSVEYLTGLFVLNFK  104 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp---------------------~~~~~l~~L~~L~l~  104 (188)
                      .+++|+.+++++  +.+..++. +..+++|+.++++++.+..++                     ..+..++++++++++
T Consensus       239 ~l~~L~~L~l~~--n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls  315 (384)
T d2omza2         239 SLTNLTDLDLAN--NQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY  315 (384)
T ss_dssp             GCTTCSEEECCS--SCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECC
T ss_pred             cccccchhcccc--CccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECC
Confidence            355566666665  34444443 244555555555555443322                     235667788888888


Q ss_pred             CCCCCccCCCccccccCCCCcccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCChhhHHHhh
Q 047302          105 DWQNLECLPSPISENLGKVDSLEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCL  171 (188)
Q Consensus       105 ~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~  171 (188)
                      +|. +..++     .+..+++|+.|++++|.++++   ..+++|++|++++|+++.    +++ +.++++
T Consensus       316 ~n~-l~~l~-----~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~----l~~-l~~l~~  374 (384)
T d2omza2         316 FNN-ISDIS-----PVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISD----LTP-LANLTR  374 (384)
T ss_dssp             SSC-CSCCG-----GGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCB----CGG-GTTCTT
T ss_pred             CCC-CCCCc-----ccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCC----Chh-hccCCC
Confidence            875 55442     257889999999999988776   788899999999999887    653 454443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.93  E-value=8.9e-12  Score=89.67  Aligned_cols=117  Identities=20%  Similarity=0.198  Sum_probs=90.7

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCc
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDS  125 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~  125 (188)
                      ....++.+++++....++.++..+..+++|++|++++|+|+.++ .+..+++|+.|++++|. +..++.    ....+++
T Consensus        21 ~~~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~----~~~~~~~   94 (198)
T d1m9la_          21 VATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIEN----LDAVADT   94 (198)
T ss_dssp             CCTTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSS----HHHHHHH
T ss_pred             cccccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-cccccc----ccccccc
Confidence            34456667776520346777777899999999999999999987 68999999999999997 776642    2244568


Q ss_pred             ccEEEccCCccccc---CCCCCCCEeccCCCCCCCCCCCCCh--hhHHHhhh
Q 047302          126 LEELDISGTAIRQL---SRLCSLTKWDLSDCNLPVEGGEIPR--DICYLCLL  172 (188)
Q Consensus       126 L~~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~~~~~lp~--~l~~l~~L  172 (188)
                      |++|++++|.++.+   ..+++|+.|++++|.+++    ++.  .+..+++|
T Consensus        95 L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~----~~~~~~l~~l~~L  142 (198)
T d1m9la_          95 LEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN----WGEIDKLAALDKL  142 (198)
T ss_dssp             CCEEECSEEECCCHHHHHHHHHSSEEEESEEECCC----HHHHHHHTTTTTC
T ss_pred             ccccccccccccccccccccccccccccccchhcc----ccccccccCCCcc
Confidence            99999999998876   778899999999999987    543  34555555

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.84  E-value=5.4e-09  Score=79.76  Aligned_cols=94  Identities=20%  Similarity=0.207  Sum_probs=71.5

Q ss_pred             ceecEEEEcccccccccccccccCCCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCccc
Q 047302           48 TSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLE  127 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~  127 (188)
                      .++++|++++  +.++.+|+.   .++|++|++++|+++++|..   ..+|+.|++++|. +..++.       -.+.|+
T Consensus        38 ~~l~~LdLs~--~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~-l~~l~~-------lp~~L~  101 (353)
T d1jl5a_          38 RQAHELELNN--LGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSD-------LPPLLE  101 (353)
T ss_dssp             HTCSEEECTT--SCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCS-------CCTTCC
T ss_pred             cCCCEEEeCC--CCCCCCCCC---CCCCCEEECCCCCCcccccc---hhhhhhhhhhhcc-cchhhh-------hccccc
Confidence            4688889988  578888854   56888999999998888854   4578888888886 555421       124688


Q ss_pred             EEEccCCccccc---CCCCCCCEeccCCCCCCC
Q 047302          128 ELDISGTAIRQL---SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       128 ~L~l~~~~i~~~---~~l~~L~~L~l~~~~l~~  157 (188)
                      +|++++|.+..+   ..+++|++|+++++.+..
T Consensus       102 ~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~  134 (353)
T d1jl5a_         102 YLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK  134 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSC
T ss_pred             cccccccccccccchhhhccceeeccccccccc
Confidence            889988888776   677888889888887775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.1e-08  Score=70.24  Aligned_cols=88  Identities=17%  Similarity=0.114  Sum_probs=73.6

Q ss_pred             CCCccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCC
Q 047302           72 MKSLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLT  146 (188)
Q Consensus        72 l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~  146 (188)
                      +.....++..++++.+.|..+..+++|+.|+++++..++.++   +..+..+++|+.|++++|.++.+     ..+++|+
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~---~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE---LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC---GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC---chhhccccccCcceeeccccCCccccccccccccc
Confidence            344566888888888888888899999999998776577775   34578899999999999999887     6888999


Q ss_pred             EeccCCCCCCCCCCCCChhh
Q 047302          147 KWDLSDCNLPVEGGEIPRDI  166 (188)
Q Consensus       147 ~L~l~~~~l~~~~~~lp~~l  166 (188)
                      +|+|++|+++.    +|..+
T Consensus        84 ~L~Ls~N~l~~----l~~~~   99 (156)
T d2ifga3          84 RLNLSFNALES----LSWKT   99 (156)
T ss_dssp             EEECCSSCCSC----CCSTT
T ss_pred             ceeccCCCCcc----cChhh
Confidence            99999999997    77764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=8.7e-09  Score=75.25  Aligned_cols=61  Identities=8%  Similarity=0.065  Sum_probs=27.9

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecC-ccCcccc-hhhhcCCCCcEEEccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDG-TAIRELP-LSVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~  107 (188)
                      ++++|+++++++| .....++ ..+..+..++++.+.. +++...+ ..+..+++|+++++.++.
T Consensus        51 ~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          51 GFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             ccchhhhhhhccc-cccceeeccccccccccccccccccccccccccccccccccccccccchhh
Confidence            3555555555552 2222222 2334455555554433 3443332 234555666666665553

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=3.8e-09  Score=79.54  Aligned_cols=61  Identities=13%  Similarity=0.024  Sum_probs=45.2

Q ss_pred             ccceecEEEEcccccccccccccccCCCCccEEeecCc-cCc--ccchhhhcCCCCcEEEccCCC
Q 047302           46 YGTSVGTSIVGNCYKRIANLERFWGSMKSLTMLILDGT-AIR--ELPLSVEYLTGLFVLNFKDWQ  107 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~~~~~~l~~L~~L~l~~~-~i~--~lp~~~~~l~~L~~L~l~~~~  107 (188)
                      .+++|++|.+++| ..-...+..+..+++|++|+++++ .+.  .+......+++|++|++++|.
T Consensus        69 ~c~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~  132 (284)
T d2astb2          69 QCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF  132 (284)
T ss_dssp             TBCCCSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred             hCCCccccccccc-CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccc
Confidence            5889999999986 433444555677889999999885 564  234345678999999998875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=4.2e-08  Score=73.65  Aligned_cols=58  Identities=16%  Similarity=0.142  Sum_probs=32.0

Q ss_pred             hcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCC-ccccc-----CCCCCCCEeccCCC
Q 047302           93 EYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGT-AIRQL-----SRLCSLTKWDLSDC  153 (188)
Q Consensus        93 ~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~-~i~~~-----~~l~~L~~L~l~~~  153 (188)
                      ..+++|++|++++|..++.   ..+..+..+++|++|++++| .+++.     ..+++|+.|++++|
T Consensus       172 ~~~~~L~~L~L~~~~~itd---~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKN---DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCG---GGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccccccccccccCCCc---hhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            4456666666666542221   11234455666777777665 34332     55566777776666

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6e-08  Score=70.62  Aligned_cols=121  Identities=13%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             ccceecEEEEccccccccccc-ccccCCCCccEEeecCccCcccch--hhhcCCCCcEEEccCCCCCccCCCcc------
Q 047302           46 YGTSVGTSIVGNCYKRIANLE-RFWGSMKSLTMLILDGTAIRELPL--SVEYLTGLFVLNFKDWQNLECLPSPI------  116 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~l~-~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~~l~~l~~~~------  116 (188)
                      .++.++++.+..| +.+...+ ..+.++++|+++++.++++...+.  ....++.+..+...++. +..++...      
T Consensus        76 ~l~~l~~l~~~~~-n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~~~~~  153 (242)
T d1xwdc1          76 NLPKLHEIRIEKA-NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSF  153 (242)
T ss_dssp             SCTTCCEEEEECC-TTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSSTTSBS
T ss_pred             ccccccccccccc-ccccccccccccccccccccccchhhhcccccccccccccccccccccccc-cccccccccccccc
Confidence            4677788877665 5664444 456788888888888887765442  12233333333333322 22221110      


Q ss_pred             ---------------ccccCCCCcccEE-EccCCccccc-----CCCCCCCEeccCCCCCCCCCCCCChh-hHHHhhh
Q 047302          117 ---------------SENLGKVDSLEEL-DISGTAIRQL-----SRLCSLTKWDLSDCNLPVEGGEIPRD-ICYLCLL  172 (188)
Q Consensus       117 ---------------~~~l~~l~~L~~L-~l~~~~i~~~-----~~l~~L~~L~l~~~~l~~~~~~lp~~-l~~l~~L  172 (188)
                                     +.......+++.+ .+.+|.++++     ..+++|+.|++++|+++.    +|.. +..++.|
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~----l~~~~~~~l~~L  227 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS----LPSYGLENLKKL  227 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCC----CCSSSCTTCCEE
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCc----cCHHHHcCCccc
Confidence                           1222333444333 3455555554     567778888888888776    5543 4444444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.6e-07  Score=70.90  Aligned_cols=89  Identities=13%  Similarity=0.194  Sum_probs=39.1

Q ss_pred             cceecEEEEcccccccc-----cccccccCCCCccEEeecCccCcc-----cchhhh-cCCCCcEEEccCCCCCccCC-C
Q 047302           47 GTSVGTSIVGNCYKRIA-----NLERFWGSMKSLTMLILDGTAIRE-----LPLSVE-YLTGLFVLNFKDWQNLECLP-S  114 (188)
Q Consensus        47 l~~L~~L~l~~~~~~i~-----~l~~~~~~l~~L~~L~l~~~~i~~-----lp~~~~-~l~~L~~L~l~~~~~l~~l~-~  114 (188)
                      +++++++++++|  .++     .++..+..+++|++|++++|.+..     +...+. ...+|++|++++|. ++... .
T Consensus        26 l~~l~~L~L~~~--~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~  102 (460)
T d1z7xw1          26 LQQCQVVRLDDC--GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCG  102 (460)
T ss_dssp             HTTCSEEEEESS--CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHH
T ss_pred             CCCCCEEEeCCC--CCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccc
Confidence            455555555554  221     233334455555555555555531     111111 12345555555554 32211 0


Q ss_pred             ccccccCCCCcccEEEccCCcccc
Q 047302          115 PISENLGKVDSLEELDISGTAIRQ  138 (188)
Q Consensus       115 ~~~~~l~~l~~L~~L~l~~~~i~~  138 (188)
                      .++..+..+++|++|++++|.+++
T Consensus       103 ~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1         103 VLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             HHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             cccchhhccccccccccccccchh
Confidence            112234445555555555555543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.17  E-value=1.1e-06  Score=67.10  Aligned_cols=120  Identities=14%  Similarity=0.089  Sum_probs=79.3

Q ss_pred             ccceecEEEEccccccccc------ccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCCCCCccCC-
Q 047302           46 YGTSVGTSIVGNCYKRIAN------LERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDWQNLECLP-  113 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~------l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l~-  113 (188)
                      ...+++.++++.|  .+..      +.+.+..+++|+.|++++|.+.     .+...+..+++|++|++++|. +.... 
T Consensus       184 ~~~~L~~L~L~~n--~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~  260 (344)
T d2ca6a1         184 SHRLLHTVKMVQN--GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGA  260 (344)
T ss_dssp             HCTTCCEEECCSS--CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHH
T ss_pred             hhhhhcccccccc--cccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCc-cCchhh
Confidence            3567888888884  4422      3345567788888888888873     244556778888888888886 33210 


Q ss_pred             CccccccCC--CCcccEEEccCCccccc----------CCCCCCCEeccCCCCCCCCCCCCChhhHHHhhh
Q 047302          114 SPISENLGK--VDSLEELDISGTAIRQL----------SRLCSLTKWDLSDCNLPVEGGEIPRDICYLCLL  172 (188)
Q Consensus       114 ~~~~~~l~~--l~~L~~L~l~~~~i~~~----------~~l~~L~~L~l~~~~l~~~~~~lp~~l~~l~~L  172 (188)
                      ..+.+.+..  ...|+.|++++|.|.+.          ...++|++|++++|.+.+    -...+..+..+
T Consensus       261 ~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~----~~~~~~~l~~~  327 (344)
T d2ca6a1         261 AAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE----EDDVVDEIREV  327 (344)
T ss_dssp             HHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT----TSHHHHHHHHH
T ss_pred             HHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC----cchHHHHHHHH
Confidence            011122222  35688889988887653          356788899998888876    45556666655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.3e-07  Score=65.08  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=32.7

Q ss_pred             cCCCCccEEeecCccCcccc---hhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccc
Q 047302           70 GSMKSLTMLILDGTAIRELP---LSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIR  137 (188)
Q Consensus        70 ~~l~~L~~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~  137 (188)
                      ..+++|++|++++|+++.++   ..+..+++|+.|++++|. +..++.-  ..+. ...|+.+++.+|++.
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l--~~l~-~~~L~~L~L~~Npl~  128 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSEREL--DKIK-GLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGH--HHHT-TCCCSSCCCTTSTTS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhh--hhhh-ccccceeecCCCCcC
Confidence            44566666666666665442   234556666666666665 4443210  1112 224555555555554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=4.9e-07  Score=62.14  Aligned_cols=82  Identities=21%  Similarity=0.198  Sum_probs=58.3

Q ss_pred             CccEEeecCccCcccchhhhcCCCCcEEEccCCCCCccCCCccccccCCCCcccEEEccCCccccc-----CCCCCCCEe
Q 047302           74 SLTMLILDGTAIRELPLSVEYLTGLFVLNFKDWQNLECLPSPISENLGKVDSLEELDISGTAIRQL-----SRLCSLTKW  148 (188)
Q Consensus        74 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~l~~l~~L~~L~l~~~~i~~~-----~~l~~L~~L  148 (188)
                      .+..++...+....++.....++.|++|++++|. ++.++. ++..+..+++|+.|++++|.|+++     .....|+.+
T Consensus        43 ~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~-i~~l~~-~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L  120 (162)
T d1koha1          43 IDVVLNRRSSMAATLRIIEENIPELLSLNLSNNR-LYRLDD-MSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEEL  120 (162)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSC-CCCCSG-GGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSC
T ss_pred             chhhcchhhhHhhhhHHHHHhCCCCCEeeCCCcc-ccCCch-hHHHHhhCCcccccccccCccccchhhhhhhcccccee
Confidence            3333444433333444445679999999999997 766532 123456789999999999999887     234569999


Q ss_pred             ccCCCCCCC
Q 047302          149 DLSDCNLPV  157 (188)
Q Consensus       149 ~l~~~~l~~  157 (188)
                      ++++|.+..
T Consensus       121 ~L~~Npl~~  129 (162)
T d1koha1         121 WLDGNSLSD  129 (162)
T ss_dssp             CCTTSTTSS
T ss_pred             ecCCCCcCc
Confidence            999999885

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.94  E-value=2.3e-06  Score=65.27  Aligned_cols=107  Identities=20%  Similarity=0.261  Sum_probs=69.0

Q ss_pred             ceecEEEEcccccccc-----cccccccCCCCccEEeecCccCcc------cchhhhcCCCCcEEEccCCCCCccC-CCc
Q 047302           48 TSVGTSIVGNCYKRIA-----NLERFWGSMKSLTMLILDGTAIRE------LPLSVEYLTGLFVLNFKDWQNLECL-PSP  115 (188)
Q Consensus        48 ~~L~~L~l~~~~~~i~-----~l~~~~~~l~~L~~L~l~~~~i~~------lp~~~~~l~~L~~L~l~~~~~l~~l-~~~  115 (188)
                      ..|+.+.+++  +.+.     .+...+...++++.+++++|.+..      +...+...++|+.|++++|. +... ...
T Consensus       158 ~~L~~l~l~~--n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~  234 (344)
T d2ca6a1         158 PPLRSIICGR--NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSA  234 (344)
T ss_dssp             CCCCEEECCS--SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHH
T ss_pred             cccceeeccc--ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-cccccccc
Confidence            4455555555  2331     233344566788888888888742      23346677888999998886 3211 011


Q ss_pred             cccccCCCCcccEEEccCCccccc-----------CCCCCCCEeccCCCCCCC
Q 047302          116 ISENLGKVDSLEELDISGTAIRQL-----------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       116 ~~~~l~~l~~L~~L~l~~~~i~~~-----------~~l~~L~~L~l~~~~l~~  157 (188)
                      +...+..+++|++|++++|.+.+.           ...++|++|++++|++..
T Consensus       235 L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         235 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             ccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            233456788899999999988764           234579999999998774

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.93  E-value=4.3e-06  Score=57.49  Aligned_cols=107  Identities=21%  Similarity=0.113  Sum_probs=69.5

Q ss_pred             ccceecEEEEccccccccc-----ccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCCCCCccC-CC
Q 047302           46 YGTSVGTSIVGNCYKRIAN-----LERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDWQNLECL-PS  114 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i~~-----l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-~~  114 (188)
                      +.++|+.|+++++ +.+..     +...+...++|++|++++|.+.     .+...+...+.|++|++++|. +..- ..
T Consensus        13 n~~~L~~L~L~~~-~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~   90 (167)
T d1pgva_          13 DDTDLKEVNINNM-KRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLA   90 (167)
T ss_dssp             TCSSCCEEECTTC-CSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHH
T ss_pred             CCCCCcEEEeCCC-CCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHH
Confidence            4678888888875 44422     3345566778888888888774     233456677888888888886 3321 11


Q ss_pred             ccccccCCCCcccEEEccCCccccc------------CCCCCCCEeccCCCC
Q 047302          115 PISENLGKVDSLEELDISGTAIRQL------------SRLCSLTKWDLSDCN  154 (188)
Q Consensus       115 ~~~~~l~~l~~L~~L~l~~~~i~~~------------~~l~~L~~L~l~~~~  154 (188)
                      .+...+...++|+.|++.+|.+..+            ..-++|+.|+++.+.
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            1223456677888888887754432            445778888886653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=1.1e-05  Score=62.75  Aligned_cols=18  Identities=33%  Similarity=0.398  Sum_probs=9.1

Q ss_pred             CCCCcccEEEccCCcccc
Q 047302          121 GKVDSLEELDISGTAIRQ  138 (188)
Q Consensus       121 ~~l~~L~~L~l~~~~i~~  138 (188)
                      ..+++|++|++++|.+++
T Consensus       394 ~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         394 LANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHCCCCCEEECCSSSCCH
T ss_pred             hcCCCCCEEECCCCcCCH
Confidence            344555555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.26  E-value=5.7e-05  Score=51.43  Aligned_cols=107  Identities=16%  Similarity=0.078  Sum_probs=61.7

Q ss_pred             ccceecEEEEccccccc-----ccccccccCCCCccEEeecCccCc-----ccchhhhcCCCCcEEEccCCCCCcc-CCC
Q 047302           46 YGTSVGTSIVGNCYKRI-----ANLERFWGSMKSLTMLILDGTAIR-----ELPLSVEYLTGLFVLNFKDWQNLEC-LPS  114 (188)
Q Consensus        46 ~l~~L~~L~l~~~~~~i-----~~l~~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~-l~~  114 (188)
                      +.+.|+.++++++ +.+     ..+...+...++|++|++++|.+.     .+-..+...+.++.+++++|. +.. ...
T Consensus        15 ~~~~L~~L~L~~~-~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~~g~~   92 (166)
T d1io0a_          15 NDPDLEEVNLNNI-MNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGIL   92 (166)
T ss_dssp             TCTTCCEEECTTC-TTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHH
T ss_pred             cCCCCcEEEcCCC-CCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc-ccchhHH
Confidence            4567777777764 334     123344456677777777777763     222345666777788777765 211 111


Q ss_pred             ccccccCCCCcccEEEc--cCCccccc---------CCCCCCCEeccCCCC
Q 047302          115 PISENLGKVDSLEELDI--SGTAIRQL---------SRLCSLTKWDLSDCN  154 (188)
Q Consensus       115 ~~~~~l~~l~~L~~L~l--~~~~i~~~---------~~l~~L~~L~l~~~~  154 (188)
                      .+...+...++|+.+++  .+|.+.+.         ...++|+.|+++.+.
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            11234555667776555  34455443         466778888887664

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.13  E-value=0.00019  Score=48.94  Aligned_cols=87  Identities=9%  Similarity=0.051  Sum_probs=63.9

Q ss_pred             cCCCCccEEeecCc-cCc-----ccchhhhcCCCCcEEEccCCCCCccC-CCccccccCCCCcccEEEccCCccccc---
Q 047302           70 GSMKSLTMLILDGT-AIR-----ELPLSVEYLTGLFVLNFKDWQNLECL-PSPISENLGKVDSLEELDISGTAIRQL---  139 (188)
Q Consensus        70 ~~l~~L~~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~l~~l~~L~~L~l~~~~i~~~---  139 (188)
                      .+.++|+.|+++++ .+.     .+-..+...+.|+.|++++|. +..- ...+.+.+...+.|+.|++++|.+.+.   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            55688999999975 563     133356778899999999986 4321 112234456678899999999998775   


Q ss_pred             ------CCCCCCCEeccCCCCCCC
Q 047302          140 ------SRLCSLTKWDLSDCNLPV  157 (188)
Q Consensus       140 ------~~l~~L~~L~l~~~~l~~  157 (188)
                            ...++|+.|++++|.+..
T Consensus        91 ~l~~aL~~n~sL~~L~l~~n~~~~  114 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADNQRQSV  114 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCC
T ss_pred             HHHHHHHhCCcCCEEECCCCcCCC
Confidence                  566789999999987664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.25  E-value=0.0018  Score=43.54  Aligned_cols=129  Identities=16%  Similarity=0.115  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhCCCCceeeEEEecCCCCChhhHhhhhhhccCcccceecEEEEccccccc-----ccccccccCCCCccEE
Q 047302            4 HLEKLTILMDKGPNDVRMIGICDMGGIGKVALAKIVSRDHGTYGTSVGTSIVGNCYKRI-----ANLERFWGSMKSLTML   78 (188)
Q Consensus         4 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~i-----~~l~~~~~~l~~L~~L   78 (188)
                      .|+++-+-+......+..|.+-+...++.-.+... ..... ..++|++|++++|  .+     ..+.+.+.....++.+
T Consensus         4 ~i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l-~~al~-~n~~L~~L~Ls~n--~l~~~~~~~L~~~l~~~~~l~~l   79 (166)
T d1io0a_           4 DVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKAC-AEALK-TNTYVKKFSIVGT--RSNDPVAFALAEMLKVNNTLKSL   79 (166)
T ss_dssp             CHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHH-HHHHT-TCCSCCEEECTTS--CCCHHHHHHHHHHHHHCSSCCEE
T ss_pred             cHHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHH-HHHHh-cCCccCeeeccCC--cccHHHHHHHHHHHhhcccchhh
Confidence            45665555555566777777655554444333221 22222 5789999999995  54     2244566677899999


Q ss_pred             eecCccCc-----ccchhhhcCCCCcEEEccCCC-CCcc-CCCccccccCCCCcccEEEccCCcc
Q 047302           79 ILDGTAIR-----ELPLSVEYLTGLFVLNFKDWQ-NLEC-LPSPISENLGKVDSLEELDISGTAI  136 (188)
Q Consensus        79 ~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~-~l~~-l~~~~~~~l~~l~~L~~L~l~~~~i  136 (188)
                      ++.++.+.     .+-..+...+.|+.+++..+. .+.. ....+.+.+...++|+.|++..+..
T Consensus        80 ~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          80 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             hhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            99999874     233456778999987775432 1211 1112234556788999999987654

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.85  E-value=0.0079  Score=43.95  Aligned_cols=56  Identities=16%  Similarity=0.122  Sum_probs=39.9

Q ss_pred             hhHHHHHHHHHhC-CCCceeeEEEecCCCCChhhHhhhhhhc----cCcccceecEEEEcc
Q 047302            2 DSHLEKLTILMDK-GPNDVRMIGICDMGGIGKVALAKIVSRD----HGTYGTSVGTSIVGN   57 (188)
Q Consensus         2 ~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~   57 (188)
                      +.|++++.+.+.. ...+...+.++||+|+||+++|..+++.    ....+...-++.++.
T Consensus        26 ~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~   86 (277)
T d2a5yb3          26 EYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSG   86 (277)
T ss_dssp             HHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCC
T ss_pred             HHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecC
Confidence            5789999887654 3456789999999999999999988764    222234444555544