Citrus Sinensis ID: 047313

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170----
Protein Sequence
MEKDSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHccccccccccccccEEEcccHHHHcHHHcccHHHHHcccccccccccccccccccEEEccccccccEEEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHcHcccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHcccccccEEEEcccEcccHHHHHHHHHccHHHHHHcccccccccccccccccEEEEEcccccccEEEEEEccccccccEEEEcccccccccEEccccc
Coil and Loop (DISEMBL)
mekdsqespflkgyeekcppggedsvIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSslsgrvipprlfikgryiggadevvglhEQGKLKKLLegiprnlsdcscngcgnirfvlcsncsgsckvfrdgddddddelhircpecnenglvkcpfcs
Flexible Loop (DISEMBL)
mekdsqespflkgyeekcppggeDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELwsslsgrvipprLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIrcpecnenglvkcpfcs
Low Complexity Region (SEG)
MEKDSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRdgddddddELHIRCPECNENGLVKCPFCS
Disordered region (IsUnstruct)
***********************DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDD**DDELHIRCPECNENGLVKCPF**
Disordered Region (DISOPRED)
*********************GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS*LSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFC*
Disordered Region (DISEMBL)
*********FLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS
Disordered Region (DISPRO)
******ESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKDSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	174	2.2.26 [Sep-21-2011]
Q9FLE8	390	Uncharacterized protein A	no	no	0.862	0.384	0.428	7e-32
Q9LH89	428	Uncharacterized protein A	no	no	0.873	0.355	0.410	1e-28
Q9VNL4	454	Glutaredoxin domain-conta	yes	no	0.931	0.356	0.347	3e-21
Q50H32	290	Glutaredoxin domain-conta	yes	no	0.856	0.513	0.380	5e-21
A8MXD5	290	Glutaredoxin domain-conta	yes	no	0.856	0.513	0.374	8e-21
Q9W4S1	582	Glutaredoxin domain-conta	no	no	0.931	0.278	0.321	6e-20
Q19297	146	Uncharacterized monothiol	no	no	0.580	0.691	0.299	6e-05
Q68XG4	104	Glutaredoxin-1 OS=Rickett	yes	no	0.482	0.807	0.294	0.0002
Q9ZDW1	95	Glutaredoxin-1 OS=Rickett	yes	no	0.431	0.789	0.328	0.0002
Q8LBK6	169	Monothiol glutaredoxin-S1	no	no	0.390	0.402	0.304	0.0004

>sp|Q9FLE8|Y5986_ARATH Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=1 SV=1

 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/168 (42%), Positives = 107/168 (63%), Gaps = 18/168 (10%)

Query: 22  GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR-- 79
           G++ V+ Y TSLRGIRKT+EDC  IR +L+S  +   ERDVS+H  F+DEL   L G+  
Sbjct: 223 GKERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFN 282

Query: 80  ----VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLL-------EGIPRNLSDCSCNGCGN 128
               +  PR+F+  +Y+GG +E+  L+E G+L+KL+       +G P   ++C    CG+
Sbjct: 283 NGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEMVEDGSPGFGNECE--ACGD 340

Query: 129 IRFVLCSNCSGSCKVFRDGDDDDDDELHI---RCPECNENGLVKCPFC 173
           +RFV C  CSGSCK++ +G+++D+        RCP CNENGL++C  C
Sbjct: 341 VRFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVC 388

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LH89|Y3885_ARATH Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=1 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 104/178 (58%), Gaps = 26/178 (14%)

Query: 22  GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR-- 79
           G++ VI Y TSLRGIRKT+E+   +R +L+S  +   ERDVS+H  F+DEL   L  +  
Sbjct: 249 GKERVILYFTSLRGIRKTYEESCDVRVILKSLGIRVDERDVSMHSGFKDELKELLGEKFN 308

Query: 80  ----VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPR-----NLSDCSCNGCGNIR 130
               +  PR+F+  +YIGGA+E+  L+E GKL+KLL G  R     N +   C  CG++R
Sbjct: 309 KGVGITLPRVFLGRKYIGGAEEIRKLNEDGKLEKLLGGCERVEENQNGNGLECEACGDVR 368

Query: 131 FVLCSNCSGSCKVFRDGD---------------DDDDDELHIRCPECNENGLVKCPFC 173
           FV C  CSGSCKV+ + +                ++ +     CP+CNENGL++CP C
Sbjct: 369 FVPCETCSGSCKVYYEYEDDDDDDDEGDDDESVKEEREYGFQTCPDCNENGLIRCPVC 426

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VNL4|GRCR1_DROME Glutaredoxin domain-containing cysteine-rich protein CG31559 OS=Drosophila melanogaster GN=CG31559 PE=1 SV=2

 Score =  101 bits (251), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/170 (34%), Positives = 101/170 (59%), Gaps = 8/170 (4%)

Query: 6   QESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH 65
           Q+ P  K ++EK        V+ YTTS+  IR+T+  C  ++ +L++  V F ERDV + 
Sbjct: 291 QQQPNAKNFKEK----DLGKVVLYTTSMGIIRETYTKCANVKQILRTLLVKFEERDVFMS 346

Query: 66  MEFRDELWSSL-SGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCN 124
           +E++ E+   + SG+V  P+L+++G++IG A+ V  ++E G+L++LL+      S  +C 
Sbjct: 347 VEYQAEMRQRMQSGQVRVPQLYVEGQHIGDAETVERMNESGELRQLLKPYKSMASTYTCQ 406

Query: 125 GCGNIRFVLCSNCSGSCK-VFRDGDDDDDDELHIRCPECNENGLVKCPFC 173
            CG  R + C +C+GS K V R  +    + + ++C  C+E GLVKC  C
Sbjct: 407 TCGGYRLLPCPSCNGSKKSVHR--NHFTAEFVALKCMNCDEVGLVKCHNC 454

Drosophila melanogaster (taxid: 7227)

>sp|Q50H32|GRCR1_MOUSE Glutaredoxin domain-containing cysteine-rich protein 1 OS=Mus musculus GN=Grxcr1 PE=1 SV=1

 Score =  100 bits (249), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/155 (38%), Positives = 88/155 (56%), Gaps = 6/155 (3%)

Query: 24  DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEF---RDELWSSLSGRV 80
           D V+ YTT LR +R TFE C  +R + Q+ +V F E++++L+ ++    DE    +S   
Sbjct: 137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGDYGKELDERCRRVSEAP 196

Query: 81  IPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGS 140
             P +FI G Y+GGA++++ ++E G+L+ LL  I R      C  CG   F+ CS C GS
Sbjct: 197 SLPVVFIDGHYLGGAEKILSMNESGELQDLLTKIERVQHPHECPSCGGFGFLPCSVCHGS 256

Query: 141 -CKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS 174
              VFR+   D    L  +C  CNENGL +C  C+
Sbjct: 257 KMSVFRNCFTDAFKAL--KCTACNENGLQRCKNCT 289

May play a role in actin filament architecture in developing stereocilia of sensory cells.

Mus musculus (taxid: 10090)

>sp|A8MXD5|GRCR1_HUMAN Glutaredoxin domain-containing cysteine-rich protein 1 OS=Homo sapiens GN=GRXCR1 PE=1 SV=1

 Score = 99.8 bits (247), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 58/155 (37%), Positives = 88/155 (56%), Gaps = 6/155 (3%)

Query: 24  DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEF---RDELWSSLSGRV 80
           D V+ YTT LR +R TFE C  +R + Q+ +V F E++++L+ E+    DE    +S   
Sbjct: 137 DRVVIYTTCLRVVRTTFERCELVRKIFQNHRVKFEEKNIALNGEYGKELDERCRRVSEAP 196

Query: 81  IPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGS 140
             P +FI G Y+GGA++++ ++E G+L+ +L  I R      C  CG   F+ CS C GS
Sbjct: 197 SLPVVFIDGHYLGGAEKILSMNESGELQDILTKIERVQHPHECPSCGGFGFLPCSVCHGS 256

Query: 141 -CKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS 174
              +FR+   D    L  +C  CNENGL +C  C+
Sbjct: 257 KMSMFRNCFTDSFKAL--KCTACNENGLQRCKNCA 289

May play a role in actin filament architecture in developing stereocilia of sensory cells.

Homo sapiens (taxid: 9606)

>sp|Q9W4S1|GRCR2_DROME Glutaredoxin domain-containing cysteine-rich protein CG12206 OS=Drosophila melanogaster GN=CG12206 PE=2 SV=2

 Score = 96.7 bits (239), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 54/168 (32%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 7   ESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM 66
           + P +K Y EK        V+ YTTS+  IR T+  C  ++ +L++  + F ERD+ + +
Sbjct: 420 QQPNVKNYMEK----DVGKVVLYTTSMGIIRDTYAKCANVKKILRTLLIKFEERDIFMSV 475

Query: 67  EFRDELWSSLSGRVIP-PRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNG 125
           E++ E+   +    I  P+LF++G+ IG A+ V  L+E G+L++LL       +  +C  
Sbjct: 476 EYQQEMRERMQDETIRVPQLFVEGQLIGDANIVERLNESGELRQLLRPYKSIATAYTCQT 535

Query: 126 CGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFC 173
           CG  R + C  C+GS K     +    + + ++C  C+E GL+KCP C
Sbjct: 536 CGGYRMLPCPACNGSKKSMHR-NHFTAEFVALKCMNCDEVGLIKCPNC 582

Drosophila melanogaster (taxid: 7227)

>sp|Q19297|YZ73_CAEEL Uncharacterized monothiol glutaredoxin F10D7.3 OS=Caenorhabditis elegans GN=F10D7.3 PE=3 SV=2

 Score = 47.0 bits (110), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/107 (29%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 12  KGYEEKCPPGGEDSVI--FYTTSLRGIRKTF-EDCRTIRFLLQSFKV---TFYERDVSLH 65
           K  E+K     ED ++    T  +    KT+    + ++ +L ++++      E D S  
Sbjct: 23  KKKEDKTLKDLEDKIVNDVMTHKVMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQ 82

Query: 66  MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
            E   E+    SGR   P+LFI G+++GG DE   + E+G+L+ LLE
Sbjct: 83  TEEMQEILKKYSGRTTVPQLFISGKFVGGHDETKAIEEKGELRPLLE 129

Caenorhabditis elegans (taxid: 6239)

>sp|Q68XG4|GLRX1_RICTY Glutaredoxin-1 OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=grxC1 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 43  CRTIRFLLQSFKVTFYERDVS-LHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101
           C   + LL    V + E +VS    E ++       G+   P++FI   ++GG D++  L
Sbjct: 20  CIKAKALLDKKNVIYEEIEVSNFTQEEKEAFIKKSGGKNTVPQIFIDNMHVGGCDDLFNL 79

Query: 102 HEQGKLKKLLEGIPRNLSDCSCNGC 126
            + G+L KLLE  P+N +  + +G 
Sbjct: 80  EQDGRLDKLLETQPKNKNSLTVSGA 104

Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.

Rickettsia typhi (strain ATCC VR-144 / Wilmington) (taxid: 257363)

>sp|Q9ZDW1|GLRX1_RICPR Glutaredoxin-1 OS=Rickettsia prowazekii (strain Madrid E) GN=grxC1 PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 1/76 (1%)

Query: 43  CRTIRFLLQSFKVTFYERDVS-LHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL 101
           C   + LL    V + E +VS L  E +++      G+   P++FI   ++GG D++  L
Sbjct: 20  CIKAKALLDKKNVIYEEIEVSNLTQEEKEKFIKKSGGKSTVPQIFIDNMHVGGCDDLFNL 79

Query: 102 HEQGKLKKLLEGIPRN 117
            ++G+L KLLE  P+N
Sbjct: 80  EKEGRLDKLLEHQPKN 95

Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

>sp|Q8LBK6|GRS15_ARATH Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2

 Score = 44.3 bits (103), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 42/69 (60%), Gaps = 1/69 (1%)

Query: 49  LLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLK 108
           +LQ + V    R++    E ++ +  S S     P++FIKG +IGG+D ++ +H++G+L+
Sbjct: 100 VLQQYNVPISSRNILEDQELKNAV-KSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELE 158

Query: 109 KLLEGIPRN 117
           + L+ +  N
Sbjct: 159 QKLKDVSGN 167

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
224088122	165	hypothetical protein POPTRDRAFT_417738 [	0.948	1.0	0.75	2e-66
225439370	290	PREDICTED: uncharacterized protein At5g3	0.965	0.579	0.751	2e-65
449437880	296	PREDICTED: uncharacterized protein At5g3	0.977	0.574	0.684	8e-65
296089355	183	unnamed protein product [Vitis vinifera]	0.977	0.928	0.742	2e-64
224139988	163	hypothetical protein POPTRDRAFT_256207 [	0.936	1.0	0.722	2e-63
356503861	264	PREDICTED: uncharacterized protein At5g3	0.954	0.628	0.654	4e-60
356537210	276	PREDICTED: uncharacterized protein At5g3	0.959	0.605	0.660	2e-59
356570901	254	PREDICTED: uncharacterized protein At5g3	0.977	0.669	0.651	9e-59
449501190	296	PREDICTED: uncharacterized protein At5g3	0.977	0.574	0.678	7e-58
356498657	264	PREDICTED: uncharacterized protein At5g3	0.959	0.632	0.642	3e-57

>gi|224088122|ref|XP_002308331.1| hypothetical protein POPTRDRAFT_417738 [Populus trichocarpa] gi|222854307|gb|EEE91854.1| hypothetical protein POPTRDRAFT_417738 [Populus trichocarpa]

 Score =  256 bits (655), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 126/168 (75%), Positives = 139/168 (82%), Gaps = 3/168 (1%)

Query: 6   QESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH 65
           +E P L  +EEKC PGG  SVI YTTSLR IRKTFEDC  IRFLL+S KV FYERDVSLH
Sbjct: 1   EEHPSLSDFEEKCLPGGSQSVILYTTSLRSIRKTFEDCHAIRFLLESLKVMFYERDVSLH 60

Query: 66  MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNG 125
           +EFR+ELW  L GRVIPPRLFIKGRYIGGADEV+GLHEQG+LKKLL GIP NLS+  CNG
Sbjct: 61  LEFREELWRILGGRVIPPRLFIKGRYIGGADEVIGLHEQGRLKKLLVGIPLNLSNSPCNG 120

Query: 126 CGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFC 173
           CGN RFV+CSNC+GSCKVF   +DD ++E  IRCPECNENGL KCP C
Sbjct: 121 CGNKRFVVCSNCNGSCKVF---EDDQNEEKCIRCPECNENGLAKCPIC 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439370|ref|XP_002270030.1| PREDICTED: uncharacterized protein At5g39865-like [Vitis vinifera]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 127/169 (75%), Positives = 144/169 (85%), Gaps = 1/169 (0%)

Query: 6   QESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH 65
           +E P L  +EEKCPPGG DSVIFYTTSLRGIRKTFEDC  IRFLL+SF+V F ERDVS+H
Sbjct: 121 EEHPSLLDFEEKCPPGGRDSVIFYTTSLRGIRKTFEDCSAIRFLLESFRVLFQERDVSMH 180

Query: 66  MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCS-CN 124
           MEFR+ELW  + GRV+PPRLFIKGR+IGGADEVVGLHEQGKLKKLLEGIP + ++ S C 
Sbjct: 181 MEFREELWRMMGGRVVPPRLFIKGRHIGGADEVVGLHEQGKLKKLLEGIPLSPTNNSPCK 240

Query: 125 GCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFC 173
           GCG ++F+LC NC+GSCKV  DGD D DD LHIRCPECNENGL+KCP C
Sbjct: 241 GCGGMKFLLCFNCNGSCKVIADGDGDGDDLLHIRCPECNENGLIKCPIC 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437880|ref|XP_004136718.1| PREDICTED: uncharacterized protein At5g39865-like [Cucumis sativus]

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 117/171 (68%), Positives = 141/171 (82%), Gaps = 1/171 (0%)

Query: 4   DSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS 63
           + +E   L  +E++CPPGG +SVIFY+TSLR IRKTFE+C +IRFLL+SFKV FYERDVS
Sbjct: 125 NHEEHSSLLDFEDRCPPGGSESVIFYSTSLRSIRKTFEECNSIRFLLESFKVLFYERDVS 184

Query: 64  LHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSC 123
           +H+EFR ELW  L GRVIPPRLFIKGRYIGGADEV+GLHEQGKL+KLLEGIP +L++  C
Sbjct: 185 MHLEFRKELWEVLGGRVIPPRLFIKGRYIGGADEVIGLHEQGKLRKLLEGIPLDLANSPC 244

Query: 124 NGCGNIRFVLCSNCSGSCKVFRDG-DDDDDDELHIRCPECNENGLVKCPFC 173
           + C N RF++C NC+GSCKV RD  D DDD+ L+ RC +CNENGL KCP C
Sbjct: 245 SCCANTRFLVCPNCNGSCKVLRDAYDGDDDNNLYNRCTDCNENGLAKCPIC 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089355|emb|CBI39127.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/171 (74%), Positives = 145/171 (84%), Gaps = 1/171 (0%)

Query: 4   DSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS 63
           + +E P L  +EEKCPPGG DSVIFYTTSLRGIRKTFEDC  IRFLL+SF+V F ERDVS
Sbjct: 12  EIEEHPSLLDFEEKCPPGGRDSVIFYTTSLRGIRKTFEDCSAIRFLLESFRVLFQERDVS 71

Query: 64  LHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCS- 122
           +HMEFR+ELW  + GRV+PPRLFIKGR+IGGADEVVGLHEQGKLKKLLEGIP + ++ S 
Sbjct: 72  MHMEFREELWRMMGGRVVPPRLFIKGRHIGGADEVVGLHEQGKLKKLLEGIPLSPTNNSP 131

Query: 123 CNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFC 173
           C GCG ++F+LC NC+GSCKV  DGD D DD LHIRCPECNENGL+KCP C
Sbjct: 132 CKGCGGMKFLLCFNCNGSCKVIADGDGDGDDLLHIRCPECNENGLIKCPIC 182

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139988|ref|XP_002323371.1| hypothetical protein POPTRDRAFT_256207 [Populus trichocarpa] gi|222868001|gb|EEF05132.1| hypothetical protein POPTRDRAFT_256207 [Populus trichocarpa]

 Score =  246 bits (629), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/166 (72%), Positives = 135/166 (81%), Gaps = 3/166 (1%)

Query: 9   PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEF 68
           P L  +EE C PGG  +VI YTTSLR IRKTFEDC  IRFLL+SFKV F+E+DVSLH+EF
Sbjct: 1   PSLSDFEEICLPGGSQAVILYTTSLRSIRKTFEDCHAIRFLLESFKVIFHEKDVSLHLEF 60

Query: 69  RDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGN 128
           R+ELW  +  RVIPPRLFIKGRYIGGADEV GLHEQGKLK LL GIP NLS+C C GCGN
Sbjct: 61  REELWRIMGDRVIPPRLFIKGRYIGGADEVTGLHEQGKLKNLLAGIPLNLSNCPCTGCGN 120

Query: 129 IRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS 174
           IRF++CS+C+GS KVF    DD +DE +IRCPECNENGLVKC  CS
Sbjct: 121 IRFIVCSDCNGSRKVFA---DDQNDETYIRCPECNENGLVKCLICS 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503861|ref|XP_003520720.1| PREDICTED: uncharacterized protein At5g39865-like [Glycine max]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 112/171 (65%), Positives = 136/171 (79%), Gaps = 5/171 (2%)

Query: 4   DSQESPFLKGYEEKCPPGGED-SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV 62
           ++ E P L  ++E CPPGG + S+I YTTSLRGIRKTF++C TIRFLL+SFK+ ++ERDV
Sbjct: 97  NNNEYPSLSDFKELCPPGGSNHSIILYTTSLRGIRKTFQECNTIRFLLRSFKIMYHERDV 156

Query: 63  SLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCS 122
           SLH+EFR+ELW  L G+VIPP+LFIKGRYIGGADEVVGLHE G L K LEG P + SD  
Sbjct: 157 SLHLEFREELWKILGGKVIPPKLFIKGRYIGGADEVVGLHEMGWLGKFLEGTPTHSSDSP 216

Query: 123 CNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFC 173
           C+GC N+RF +CSNC GSCKVF     D++DE  +RC +CNENGLVKCP C
Sbjct: 217 CSGCANMRFAICSNCCGSCKVF----TDNNDECFVRCSQCNENGLVKCPVC 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537210|ref|XP_003537122.1| PREDICTED: uncharacterized protein At5g39865-like [Glycine max]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/168 (66%), Positives = 133/168 (79%), Gaps = 1/168 (0%)

Query: 6   QESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH 65
           +E P L  +EE  PPGG  +VI YTTSLRGIRKTF+DC T+RFL++SFK+T++ERDVSLH
Sbjct: 108 KEYPSLTDFEEIHPPGGSQAVILYTTSLRGIRKTFQDCNTVRFLMRSFKITYHERDVSLH 167

Query: 66  MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNG 125
           +E+R+ELW  L  +VIPPRLFIKGRYIGGADEVVGLHE G L KLLEG P + +D  C G
Sbjct: 168 LEYREELWKILGCKVIPPRLFIKGRYIGGADEVVGLHEMGWLGKLLEGTPMDFADGPCKG 227

Query: 126 CGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFC 173
           C  +RF +CSNC+GSCKVF   + D+ +E  IRCPECNENGLVKC  C
Sbjct: 228 CACMRFSICSNCNGSCKVFTT-NGDNKNECFIRCPECNENGLVKCTIC 274

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570901|ref|XP_003553622.1| PREDICTED: uncharacterized protein At5g39865-like [Glycine max]

 Score =  231 bits (589), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 112/172 (65%), Positives = 133/172 (77%), Gaps = 2/172 (1%)

Query: 4   DSQESPFLKGYEEKCPPGGED-SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV 62
           ++ E P L  ++E  P GG   S+I YTTSLRGIRKTF+DC TIRFLL+SFK+ ++ERDV
Sbjct: 82  NNNEYPSLSDFKELRPQGGNSHSIILYTTSLRGIRKTFQDCNTIRFLLRSFKIMYHERDV 141

Query: 63  SLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCS 122
           SLH+EFR+ELW  L G+VIPP+LFIKGRYIGGADEVVGLHE G L K LEG P + SD  
Sbjct: 142 SLHLEFREELWKILGGKVIPPKLFIKGRYIGGADEVVGLHEMGWLGKFLEGTPTHSSDSP 201

Query: 123 CNGCGNIRFVLCSNCSGSCKVFRDGDDD-DDDELHIRCPECNENGLVKCPFC 173
           C GC N+RF +CSNC GSCKVF D  D+ ++DE  +RC  CNENGLVKCP C
Sbjct: 202 CTGCANMRFTICSNCCGSCKVFTDNSDNKNNDECFVRCSLCNENGLVKCPVC 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449501190|ref|XP_004161302.1| PREDICTED: uncharacterized protein At5g39865-like [Cucumis sativus]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 116/171 (67%), Positives = 140/171 (81%), Gaps = 1/171 (0%)

Query: 4   DSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS 63
           + +E   L  +E++CPPGG +SVIFY+TSLR IRKTFE+C +IRFLL+SFKV FYERDVS
Sbjct: 125 NHEEHSSLLDFEDRCPPGGSESVIFYSTSLRSIRKTFEECNSIRFLLESFKVLFYERDVS 184

Query: 64  LHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSC 123
           +H+EFR ELW  L GRVIPPRLFIKGRYIGGADEV+GLHEQGKL+KLLEGIP +L++  C
Sbjct: 185 MHLEFRKELWEVLGGRVIPPRLFIKGRYIGGADEVIGLHEQGKLRKLLEGIPLDLANSPC 244

Query: 124 NGCGNIRFVLCSNCSGSCKV-FRDGDDDDDDELHIRCPECNENGLVKCPFC 173
           + C N RF++C NC+GSCKV     DDDDD+ L+ RC +CNENGL KCP C
Sbjct: 245 SCCANTRFLVCPNCNGSCKVLRDAYDDDDDNNLYNRCTDCNENGLAKCPIC 295

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498657|ref|XP_003518166.1| PREDICTED: uncharacterized protein At5g39865-like [Glycine max]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 130/168 (77%), Gaps = 1/168 (0%)

Query: 6   QESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH 65
           +E P L  +EE  PPGG  +VI YTTS+RGIRKTF+DC T+ FLL+SFK+ ++ERDVSLH
Sbjct: 97  EEYPSLTDFEEIHPPGGSQAVILYTTSMRGIRKTFQDCNTVCFLLRSFKIRYHERDVSLH 156

Query: 66  MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNG 125
           +E+R+ELW  L  +VIPPRLFIKGRYIGGADEVVGLHE G L KLLE  P + +D  C G
Sbjct: 157 LEYREELWKILGSKVIPPRLFIKGRYIGGADEVVGLHEMGWLGKLLEETPMDFADGPCKG 216

Query: 126 CGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFC 173
           C  +RF +C NC+GSCKVF   + D+ +E  IRCPECNENGLVKCP C
Sbjct: 217 CACMRFSICFNCNGSCKVFTT-NGDNKNECFIRCPECNENGLVKCPIC 263

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	174
TAIR|locus:2164285	239	AT5G06470 [Arabidopsis thalian	0.959	0.698	0.549	1.1e-48
TAIR|locus:2179157	401	AT5G01420 [Arabidopsis thalian	0.908	0.394	0.553	1.5e-44
TAIR|locus:2150640	384	AT5G03870 [Arabidopsis thalian	0.959	0.434	0.477	2e-40
TAIR|locus:2139252	334	AT4G10630 [Arabidopsis thalian	0.908	0.473	0.482	8.7e-40
TAIR|locus:2035589	314	AT1G32760 [Arabidopsis thalian	0.936	0.519	0.476	1.3e-38
TAIR|locus:2159038	274	AT5G13810 [Arabidopsis thalian	0.862	0.547	0.467	6.5e-35
TAIR|locus:2019479	368	AT1G64500 [Arabidopsis thalian	0.977	0.461	0.426	2.2e-34
TAIR|locus:2080635	417	AT3G57070 [Arabidopsis thalian	0.856	0.357	0.439	7.7e-32
TAIR|locus:504954828	390	AT5G39865 [Arabidopsis thalian	0.867	0.387	0.419	8.8e-31
TAIR|locus:2040267	402	AT2G41330 [Arabidopsis thalian	0.925	0.400	0.425	1.3e-29

TAIR|locus:2164285 AT5G06470 [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
 Identities = 94/171 (54%), Positives = 121/171 (70%)

Query:     6 QESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH 65
             +E   L  ++E CPPGGEDSV+FYTT LR +RKTFE CR +RFLL++ +V + ERDVS+ 
Sbjct:    71 EERGILLEFKENCPPGGEDSVVFYTTGLRSVRKTFEACRRVRFLLENHQVMYRERDVSMD 130

Query:    66 MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNG 125
              EFR+E+W  L G+V  PRLFI+GRYIGGA+EVV L+E GKLKKLL+GI +   D  C  
Sbjct:   131 SEFREEMWRLLGGKVTSPRLFIRGRYIGGAEEVVALNENGKLKKLLQGISQ--VDSPCES 188

Query:   126 CGNIRFVLCSNCSGSCKVF--RXXXXXXXXELHIRCPECNENGLVKCPFCS 174
             C N RF++CS+C+GS ++             +  RC ECNENGLVKCP C+
Sbjct:   189 CENERFLICSSCNGSTRLLAEHHDEESSNDNMWTRCRECNENGLVKCPLCT 239

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2179157 AT5G01420 [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.5e-44, P = 1.5e-44
 Identities = 93/168 (55%), Positives = 114/168 (67%)

Query:     9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEF 68
             P L+ +EE+CPPGGE+SV+FYTT+LRGIRKTF+DC  IRFLL SFKV +YERDVS+H E+
Sbjct:   242 PLLE-FEERCPPGGEESVVFYTTTLRGIRKTFDDCNMIRFLLDSFKVKYYERDVSMHREY 300

Query:    69 RDELW--SSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGC 126
             R+EL   S+    V+PP LF+KGR IGGA  V+GLHEQGK K L EGIP    D  C  C
Sbjct:   301 REELRRISAAETEVLPPVLFVKGRCIGGAQRVLGLHEQGKFKILFEGIPIT-GDERCRRC 359

Query:   127 GNIRFVLCSNCSGSCKVFRXXXXXXXXELHIRCPECNENGLVKCPFCS 174
                RF++C  C GS ++             I+C  CNENGL+ C  CS
Sbjct:   360 DGFRFLMCDGCRGSRRIISGDGS------RIQCLICNENGLIVCVGCS 401

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2150640 AT5G03870 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 83/174 (47%), Positives = 111/174 (63%)

Query:     3 KDSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV 62
             K  +    L+ + EKCPPGGE SV+ Y T+LRGIRKTFEDC  +R +L S +V F ERDV
Sbjct:   216 KTEKTERILEKFPEKCPPGGEHSVVIYITTLRGIRKTFEDCNVVRSILDSHEVRFSERDV 275

Query:    63 SLHMEFRDELWSSLSGRVIP-PRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPR-NLSD 120
             S+H  F++E+   +  + +  P +F+KGR +G  +EV+ L E+GKL  LLEGIP   L  
Sbjct:   276 SMHSVFKEEIRGIMGTKHVKIPAVFVKGRMVGSVEEVMRLEEEGKLGILLEGIPAARLGG 335

Query:   121 CSCNGCGNIRFVLCSNCSGSCKVFRXXXXXXXXELHIRCPECNENGLVKCPFCS 174
               C GCG +RF++C  C+GSCKV             ++C +CNENGLV CP CS
Sbjct:   336 SCCRGCGGMRFMMCVVCNGSCKVREEEKKSM-----VKCLKCNENGLVLCPICS 384

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2139252 AT4G10630 [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 83/172 (48%), Positives = 112/172 (65%)

Query:    14 YEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELW 73
             +E  CPPGGE+ V+ YTTSLRG+R+TFE C  +R  ++SF V   ERDVS+   FR+EL 
Sbjct:   166 FERICPPGGENRVVMYTTSLRGVRQTFEACNAVRAAVESFGVVVCERDVSMDRRFREELV 225

Query:    74 SSLSGRV-------IPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSD-C---S 122
             S ++ RV       +PPR+F+KGRYIGG +EV+ L E+G   +L+ GIPR  +  C   +
Sbjct:   226 SLMAKRVGDEGVAALPPRVFVKGRYIGGGEEVLRLVEEGSFGELISGIPRKKAGGCESGA 285

Query:   123 CNGCGNIRFVLCSNCSGSCKVFRXXXXXXXXELHIRCPECNENGLVKCPFCS 174
             C+GCG + F+ C  C+GSCK+ +           +RC ECNENGLV CP CS
Sbjct:   286 CDGCGGLFFLPCFRCNGSCKMVKGWGSASVV---VRCNECNENGLVPCPICS 334

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2035589 AT1G32760 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 82/172 (47%), Positives = 110/172 (63%)

Query:     9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEF 68
             P L    E+   GGE+ V+ YTTSLRG+R+TFE C  +R  ++SF V   ERDVS+   F
Sbjct:   146 PKLAEESERLCDGGENRVVIYTTSLRGVRRTFEACNAVRAAIESFGVVVCERDVSMDRGF 205

Query:    69 RDELWSSLS----GRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCS-- 122
             R+EL + ++      V+PPR+F+KG+YIGGA+EV+ L E+G L +LL+ IPR    C   
Sbjct:   206 REELSNLMAVESTAAVLPPRVFVKGKYIGGAEEVMRLVEEGLLGELLKEIPRKKDRCGGG 265

Query:   123 CNGCGNIRFVLCSNCSGSCKVFRXXXXXXXXELHIRCPECNENGLVKCPFCS 174
             C GCG + F+ CS C+GSCKV             ++C ECNENGLV+CP CS
Sbjct:   266 CGGCGGLAFLPCSGCNGSCKVVEGWGNDAVV---VKCKECNENGLVRCPICS 314

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2159038 AT5G13810 [Arabidopsis thaliana (taxid:3702)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 73/156 (46%), Positives = 101/156 (64%)

Query:    20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR 79
             PG ED ++ Y TSLRGIR+T+EDC  +R + + F+V   ERDVS+ + +R EL  ++  +
Sbjct:   123 PGTEDRIVVYFTSLRGIRRTYEDCYAVRMIFRGFRVWIDERDVSMDIAYRKELQIAMGEK 182

Query:    80 VIP-PRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCS 138
              +  P++FI G+Y+GGAD +  L E G+L K+L+  P       C+ CG+IRFV CSNCS
Sbjct:   183 SVSLPQVFIMGKYVGGADVIKSLFEIGELAKILKEFPMRQPGFVCHCCGDIRFVPCSNCS 242

Query:   139 GSCKVFRXXXXXXXXELHIRCPECNENGLVKCPFCS 174
             GS K+F             RCPECNENGL++CP CS
Sbjct:   243 GSKKLFDEDEDRVK-----RCPECNENGLIRCPDCS 273

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

TAIR|locus:2019479 AT1G64500 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 78/183 (42%), Positives = 107/183 (58%)

Query:     2 EKDSQESPF-----LKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT 56
             EK+  + P      L+ + EKCPPGG + +I YTTSL+G+R+T+EDC  +R +++   V 
Sbjct:   185 EKEGNKKPVMNWDPLREFPEKCPPGGGEGLIVYTTSLQGVRRTYEDCMRVRAIMEQQGVV 244

Query:    57 FYERDVSLHMEFRDELWSSLSGR--VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEG- 113
               ERDVSL      EL   L     V PPR+F+KGRY+GGA EV  ++E GKL ++L   
Sbjct:   245 VDERDVSLDAGVLSELKELLQDEASVAPPRVFVKGRYLGGAAEVTAMNENGKLGRVLRWA 304

Query:   114 -IPRNLSD--CSCNGCGNIRFVLCSNCSGSCKVFRXXXXXXXXELHIRCPECNENGLVKC 170
              + R   +   +C GCG  R++ C  C GSCKV          E   RC +CNENGL++C
Sbjct:   305 RVERVGEEGRLTCEGCGGARWLPCFECGGSCKV--AAVGAAKGERWERCVKCNENGLIRC 362

Query:   171 PFC 173
             P C
Sbjct:   363 PVC 365

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005884 "actin filament" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=IMP

GO:0051017 "actin filament bundle assembly" evidence=IDA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2080635 AT3G57070 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 69/157 (43%), Positives = 100/157 (63%)

Query:    20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR 79
             PG ED ++ Y T+LRGIRKT+EDC  +R +L+  +V+  ERD+S+  ++R EL S L   
Sbjct:   264 PGTEDKIVLYFTTLRGIRKTYEDCCCVRAILRGVQVSVDERDISMDSKYRKELQSVLGAA 323

Query:    80 VIP---PRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSN 136
               P   P++FI+G +IGG +E++ L++ G+L ++L+  P      +C  CG+ RFV C+N
Sbjct:   324 EKPVCLPQVFIRGTHIGGVEEIMQLNDGGELAEMLKDFPACERLGTCRSCGDARFVPCTN 383

Query:   137 CSGSCKVFRXXXXXXXXELHIRCPECNENGLVKCPFC 173
             C GS KVF         E   RCP+CNENGLV+C  C
Sbjct:   384 CDGSTKVFEEQD-----ERFKRCPKCNENGLVRCRVC 415

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:504954828 AT5G39865 [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 70/167 (41%), Positives = 99/167 (59%)

Query:    22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR-- 79
             G++ V+ Y TSLRGIRKT+EDC  IR +L+S  +   ERDVS+H  F+DEL   L G+  
Sbjct:   223 GKERVVLYFTSLRGIRKTYEDCCNIRIILKSLGIRIDERDVSMHSGFKDELKKLLEGKFN 282

Query:    80 ----VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCS------CNGCGNI 129
                 +  PR+F+  +Y+GG +E+  L+E G+L+KL++     + D S      C  CG++
Sbjct:   283 NGVGITLPRVFLGNKYLGGVEEIKKLNENGELEKLIKDCEM-VEDGSPGFGNECEACGDV 341

Query:   130 RFVLCSNCSGSCKVFRXXXXXXXXELHI---RCPECNENGLVKCPFC 173
             RFV C  CSGSCK++                RCP CNENGL++C  C
Sbjct:   342 RFVPCETCSGSCKLYHEGEEEDEGVTEYGFQRCPYCNENGLIRCHVC 388

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2040267 AT2G41330 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 74/174 (42%), Positives = 105/174 (60%)

Query:     2 EKDSQESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERD 61
             EKD QE P L   E+      E+ ++ Y TSLRGIRKT+EDC  +R +L+ F+V   ERD
Sbjct:   238 EKD-QEKPRLLEKEDN-----ENKIVVYFTSLRGIRKTYEDCCCVRAILRGFQVAVEERD 291

Query:    62 VSLHMEFRDELWSSLSGR--VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLS 119
             +S+  ++R EL ++L     V  P++FI+G  IGG +E+  L++ G+L ++L+  P   S
Sbjct:   292 ISMDSKYRKELQNALGEEKPVCLPQVFIRGVRIGGIEEIKILNDGGELAEMLKDFPACES 351

Query:   120 DCSCNGCGNIRFVLCSNCSGSCKVFRXXXXXXXXELHIRCPECNENGLVKCPFC 173
               +C+ CG+ RFV C+NC GS KVF             RC  CNENGLV+C  C
Sbjct:   352 IGACDSCGDARFVPCTNCGGSTKVFEEQEDGFK-----RCNGCNENGLVRCNKC 400

GO:0005634 "nucleus" evidence=ISM

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0048653 "anther development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	174
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	6e-69
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	4e-19
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	3e-11
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	2e-10
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	3e-09
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	5e-07
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	4e-06
TIGR00365	97	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4	1e-05
cd03028	90	cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family	3e-05
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	1e-04
TIGR02189	99	TIGR02189, GlrX-like_plant, Glutaredoxin-like fami	3e-04
COG0278	105	COG0278, COG0278, Glutaredoxin-related protein [Po	4e-04
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	0.002

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score =  205 bits (524), Expect = 6e-69
 Identities = 81/149 (54%), Positives = 101/149 (67%), Gaps = 5/149 (3%)

Query: 25  SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR---VI 81
            V+ YTTSLRG+RKTFEDC  +R +L+SF+V F ERDVS+   FR+EL   L      V 
Sbjct: 1   RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVS 60

Query: 82  PPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSC 141
            PR+F+ GRY+GGA+EV+ L+E G+L+KLL+GI        C GCG  RFV CS C+GSC
Sbjct: 61  LPRVFVDGRYLGGAEEVLRLNESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSC 120

Query: 142 KVFRDGDDDDDDELHIRCPECNENGLVKC 170
           KVF +        L  RCPECNENGLV+C
Sbjct: 121 KVFAENATAAGGFL--RCPECNENGLVRC 147

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 76.4 bits (189), Expect = 4e-19
 Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 26  VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL 85
           V+ ++ S      T   C+  + LL+S  + F E D+    E R+EL   LSG    P++
Sbjct: 2   VVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKE-LSGWPTVPQI 54

Query: 86  FIKGRYIGGADEVVGLHE 103
           FI G +IGG D++  LHE
Sbjct: 55  FINGEFIGGYDDLKALHE 72

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 55.6 bits (135), Expect = 3e-11
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL 85
          V+ +T        T   C+  + LL S  V F E DV    E R+EL   LSG    P++
Sbjct: 1  VVLFTKP------TCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELK-ELSGWPTVPQV 53

Query: 86 FIKGRYI 92
          FI G +I
Sbjct: 54 FIDGEHI 60

Length = 60

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 54.1 bits (131), Expect = 2e-10
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 4/71 (5%)

Query: 43  CRTIRFLLQSFKVTFY--ERDVSLHM-EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV 99
           C+  + LL+   V     E D      E +D L   L+G+   P +FI G++IGG D+++
Sbjct: 13  CKRAKSLLKELGVKPAVVELDQHEDGSEIQDYL-QELTGQRTVPNVFIGGKFIGGCDDLM 71

Query: 100 GLHEQGKLKKL 110
            LH+ GKL KL
Sbjct: 72  ALHKSGKLVKL 82

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 50.7 bits (122), Expect = 3e-09
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C   + LL S  VTF E  V      RDE+    SGR   P++FI   ++GG D++  L 
Sbjct: 12  CTRAKALLSSKGVTFTEIRVDGDPALRDEMMQ-RSGRRTVPQIFIGDVHVGGCDDLYALD 70

Query: 103 EQGKLKKLL 111
            +GKL  LL
Sbjct: 71  REGKLDPLL 79

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 57  FYERDVSLHM-EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLL 111
             E D   +  E +D L   ++G+   P +FI G++IGG  +++ L++ GKL +LL
Sbjct: 30  VVELDQLSNGSEIQDYL-EEITGQRTVPNIFINGKFIGGCSDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C   + LL S  V+F E  +      R+E+    SGR   P++FI  ++IGG D++  L 
Sbjct: 15  CHRAKALLNSKGVSFQEIPIDGDAAKREEMIKR-SGRTTVPQIFIDAQHIGGCDDLYALD 73

Query: 103 EQGKLKKLLE 112
            +G L  LL+
Sbjct: 74  ARGGLDPLLK 83

Length = 83

>gnl|CDD|188046 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 11/67 (16%)

Query: 50  LQSFKVTFYERDVSLHMEFRDEL-----WSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ 104
           L +  V F   +V    E R  +     W ++      P+L++KG ++GG D ++ +++ 
Sbjct: 37  LNACGVPFAYVNVLEDPEIRQGIKEYSNWPTI------PQLYVKGEFVGGCDIIMEMYQS 90

Query: 105 GKLKKLL 111
           G+L+ LL
Sbjct: 91  GELQTLL 97

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation [Energy metabolism, Electron transport]. Length = 97

>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 49  LLQSFKVTFYERDVSLHMEFRDEL-----WSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103
           +L    V F   D+    E R  L     W +       P+L++ G  +GG D V  +HE
Sbjct: 32  ILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTF------PQLYVNGELVGGCDIVKEMHE 85

Query: 104 QGKLK 108
            G+L+
Sbjct: 86  SGELQ 90

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein in Arabidopsis thaliana, and PfGLP-1, a GRX-like protein from Plasmodium falciparum. Length = 90

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 49  LLQSFKVTFYERDVSLHMEF-RDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKL 107
           LL    V + E DV         E+     G+   P++FI G+++GG D++  L  +GKL
Sbjct: 20  LLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAKGKL 79

Length = 80

>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 43  CRTIRFLLQSFKV--TFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG 100
           C  ++ LL +  V    +E D     +  +   S L      P +F+ G+ +GG + V+ 
Sbjct: 21  CHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80

Query: 101 LHEQGKLKKLL 111
           LH  G L  +L
Sbjct: 81  LHISGSLVPML 91

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. Length = 99

>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 11/32 (34%), Positives = 22/32 (68%)

Query: 83  PRLFIKGRYIGGADEVVGLHEQGKLKKLLEGI 114
           P+L++ G ++GG D V  +++ G+L+ LL+  
Sbjct: 73  PQLYVNGEFVGGCDIVREMYQSGELQTLLKEA 104

Length = 105

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C   + LL    V + E DV      R+E+ +   GR   P++FI   +IGG D++  L 
Sbjct: 13  CVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALE 72

Query: 103 EQG 105
            +G
Sbjct: 73  RKG 75

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	174
KOG2824	281	consensus Glutaredoxin-related protein [Posttransl	100.0
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	100.0
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.93
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.91
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.91
PRK10824	115	glutaredoxin-4; Provisional	99.91
PHA03050	108	glutaredoxin; Provisional	99.9
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.87
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.87
PRK10638	83	glutaredoxin 3; Provisional	99.86
KOG1752	104	consensus Glutaredoxin and related proteins [Postt	99.83
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.83
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.83
PTZ00062	204	glutaredoxin; Provisional	99.83
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.8
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.79
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.77
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.76
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.76
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	99.76
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.74
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.74
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.73
PRK11200	85	grxA glutaredoxin 1; Provisional	99.72
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.69
KOG0911	227	consensus Glutaredoxin-related protein [Posttransl	99.67
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.63
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.55
PRK10329	81	glutaredoxin-like protein; Provisional	99.53
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.31
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.25
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.08
KOG4023	108	consensus Uncharacterized conserved protein [Funct	98.92
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.87
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.8
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.68
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.61
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	98.59
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	98.53
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.41
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	98.36
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.33
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.31
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.25
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.21
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	98.18
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	98.15
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	98.14
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	98.14
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	98.1
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	98.08
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.01
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	98.01
PRK12559	131	transcriptional regulator Spx; Provisional	98.0
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	97.97
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	97.89
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	97.89
KOG3029	370	consensus Glutathione S-transferase-related protei	97.85
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	97.83
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	97.73
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	97.69
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.68
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	97.68
PHA02125	75	thioredoxin-like protein	97.67
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.63
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	97.59
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	97.58
COG1393	117	ArsC Arsenate reductase and related proteins, glut	97.54
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	97.52
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	97.52
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	97.49
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	97.44
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	97.43
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	97.43
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	97.41
PRK10853	118	putative reductase; Provisional	97.39
PRK10026	141	arsenate reductase; Provisional	97.37
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	97.34
PLN03165	111	chaperone protein dnaJ-related; Provisional	97.32
PRK10387	210	glutaredoxin 2; Provisional	97.31
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	97.29
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	97.2
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.1
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.05
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	97.0
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	96.95
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	96.94
cd02947	93	TRX_family TRX family; composed of two groups: Gro	96.92
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	96.91
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	96.9
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	96.83
PRK09481	211	sspA stringent starvation protein A; Provisional	96.8
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	96.73
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	96.65
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	96.61
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	96.6
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	96.6
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	96.51
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.43
PHA02278	103	thioredoxin-like protein	96.39
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	96.38
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.19
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.14
PRK09381	109	trxA thioredoxin; Provisional	96.13
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	96.06
KOG0406	231	consensus Glutathione S-transferase [Posttranslati	96.03
PRK15113	214	glutathione S-transferase; Provisional	95.97
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	95.9
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.86
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	95.77
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	95.74
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	95.66
PLN02473	214	glutathione S-transferase	95.62
KOG0910	150	consensus Thioredoxin-like protein [Posttranslatio	95.61
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	95.59
PTZ00051	98	thioredoxin; Provisional	95.54
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	95.41
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	95.14
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	95.0
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	94.99
PLN02817	265	glutathione dehydrogenase (ascorbate)	94.98
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	94.87
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	94.84
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	94.83
PRK10996	139	thioredoxin 2; Provisional	94.74
PF10865	120	DUF2703: Domain of unknown function (DUF2703); Int	94.69
PLN02378	213	glutathione S-transferase DHAR1	94.67
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	94.67
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	94.64
KOG2813	406	consensus Predicted molecular chaperone, contains	94.63
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	94.4
KOG1422	221	consensus Intracellular Cl- channel CLIC, contains	94.36
PRK10767	371	chaperone protein DnaJ; Provisional	94.21
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	94.04
PRK14300	372	chaperone protein DnaJ; Provisional	94.01
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	94.0
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	93.96
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	93.46
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	93.38
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	93.36
PLN02395	215	glutathione S-transferase	93.27
PRK14285	365	chaperone protein DnaJ; Provisional	93.26
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	93.12
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	93.09
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	93.08
PRK10357	202	putative glutathione S-transferase; Provisional	93.01
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	92.8
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	92.8
PRK14284	391	chaperone protein DnaJ; Provisional	92.78
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	92.73
COG3019	149	Predicted metal-binding protein [General function	92.63
PRK14287	371	chaperone protein DnaJ; Provisional	92.62
PRK14298	377	chaperone protein DnaJ; Provisional	92.51
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	92.48
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	92.41
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	92.18
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	92.15
PF00684	66	DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0	92.14
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	92.12
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	92.11
PTZ00057	205	glutathione s-transferase; Provisional	92.1
PRK14286	372	chaperone protein DnaJ; Provisional	92.1
PRK14288	369	chaperone protein DnaJ; Provisional	92.09
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	92.07
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	92.0
PRK14301	373	chaperone protein DnaJ; Provisional	91.99
PRK14282	369	chaperone protein DnaJ; Provisional	91.95
PRK14291	382	chaperone protein DnaJ; Provisional	91.92
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	91.9
COG3118	304	Thioredoxin domain-containing protein [Posttransla	91.79
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	91.74
PRK14294	366	chaperone protein DnaJ; Provisional	91.69
PRK14289	386	chaperone protein DnaJ; Provisional	91.63
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	91.62
PRK14280	376	chaperone protein DnaJ; Provisional	91.58
PRK11752	264	putative S-transferase; Provisional	91.41
PRK14295	389	chaperone protein DnaJ; Provisional	91.38
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	91.32
PRK14297	380	chaperone protein DnaJ; Provisional	91.28
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	91.16
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	91.15
PRK14290	365	chaperone protein DnaJ; Provisional	91.05
KOG4244	281	consensus Failed axon connections (fax) protein/gl	90.94
PRK14296	372	chaperone protein DnaJ; Provisional	90.9
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	90.83
PRK14279	392	chaperone protein DnaJ; Provisional	90.74
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	90.67
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	90.65
PRK14279	392	chaperone protein DnaJ; Provisional	90.64
TIGR02642	186	phage_xxxx uncharacterized phage protein. This unc	90.64
PRK14293	374	chaperone protein DnaJ; Provisional	90.59
PF07315	93	DUF1462: Protein of unknown function (DUF1462); In	90.53
PRK14282	369	chaperone protein DnaJ; Provisional	90.52
PRK14285	365	chaperone protein DnaJ; Provisional	90.51
PRK14276	380	chaperone protein DnaJ; Provisional	90.46
KOG0868	217	consensus Glutathione S-transferase [Posttranslati	90.43
PRK14280	376	chaperone protein DnaJ; Provisional	90.4
PRK14278	378	chaperone protein DnaJ; Provisional	90.25
PRK10542	201	glutathionine S-transferase; Provisional	90.07
PRK14301	373	chaperone protein DnaJ; Provisional	90.02
PRK14296	372	chaperone protein DnaJ; Provisional	90.01
PRK14286	372	chaperone protein DnaJ; Provisional	89.83
PRK14277	386	chaperone protein DnaJ; Provisional	89.74
PRK14300	372	chaperone protein DnaJ; Provisional	89.74
PRK10767	371	chaperone protein DnaJ; Provisional	89.72
PRK14276	380	chaperone protein DnaJ; Provisional	89.72
PRK14298	377	chaperone protein DnaJ; Provisional	89.67
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	89.54
PRK14284	391	chaperone protein DnaJ; Provisional	89.4
PRK14277	386	chaperone protein DnaJ; Provisional	89.29
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	89.25
PRK14278	378	chaperone protein DnaJ; Provisional	89.2
PRK14297	380	chaperone protein DnaJ; Provisional	89.07
KOG4420	325	consensus Uncharacterized conserved protein (Gangl	88.97
PRK14288	369	chaperone protein DnaJ; Provisional	88.89
PRK14292	371	chaperone protein DnaJ; Provisional	88.75
PRK14283	378	chaperone protein DnaJ; Provisional	88.67
PRK14294	366	chaperone protein DnaJ; Provisional	88.56
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	88.5
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	88.45
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	88.42
PRK14295	389	chaperone protein DnaJ; Provisional	88.41
PRK14290	365	chaperone protein DnaJ; Provisional	88.26
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	88.19
PRK14281	397	chaperone protein DnaJ; Provisional	87.89
PTZ00037	421	DnaJ_C chaperone protein; Provisional	87.81
PTZ00037	421	DnaJ_C chaperone protein; Provisional	87.8
PRK14289	386	chaperone protein DnaJ; Provisional	87.67
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	87.63
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	87.47
PF13901	202	DUF4206: Domain of unknown function (DUF4206)	87.45
PRK14281	397	chaperone protein DnaJ; Provisional	87.42
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	87.35
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	87.24
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	87.21
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	87.15
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	86.65
PTZ00062	204	glutaredoxin; Provisional	86.51
PRK14287	371	chaperone protein DnaJ; Provisional	85.43
PF13728	215	TraF: F plasmid transfer operon protein	85.19
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	84.82
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	84.67
PRK14291	382	chaperone protein DnaJ; Provisional	84.58
PRK14293	374	chaperone protein DnaJ; Provisional	84.53
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	84.42
PRK14283	378	chaperone protein DnaJ; Provisional	84.37
PLN03165	111	chaperone protein dnaJ-related; Provisional	84.09
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	83.93
PRK14292	371	chaperone protein DnaJ; Provisional	83.61
PRK13728	181	conjugal transfer protein TrbB; Provisional	83.4
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	83.12
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	82.72
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	82.66
KOG0867	226	consensus Glutathione S-transferase [Posttranslati	82.31
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	82.07
TIGR00595	505	priA primosomal protein N'. All proteins in this f	81.96
KOG1695	206	consensus Glutathione S-transferase [Posttranslati	81.82
COG4837	106	Uncharacterized protein conserved in bacteria [Fun	81.78
PF11331	46	DUF3133: Protein of unknown function (DUF3133); In	81.57
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	80.91
PF13462	162	Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DV	80.85
cd03022	192	DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-car	80.56
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	80.53
PF01873	125	eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro:	80.4

>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.1e-56  Score=367.35  Aligned_cols=162  Identities=59%  Similarity=1.088  Sum_probs=151.4

Q ss_pred             chHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC---CCCCcEE
Q 047313            9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG---RVIPPRL   85 (174)
Q Consensus         9 ~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~---~~~~P~v   85 (174)
                      +++.+|+++|||++++.||||+|+|+|||+|+.+|..||+||++++|.|+|+||+||..+++||++++|.   ..++|+|
T Consensus       116 ~~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrV  195 (281)
T KOG2824|consen  116 KLLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRV  195 (281)
T ss_pred             cchhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeE
Confidence            4677999999999999999999999999999999999999999999999999999999999999999986   6789999


Q ss_pred             EECCEEEeccchhhhhhhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313           86 FIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN  165 (174)
Q Consensus        86 FI~G~~IGG~del~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen  165 (174)
                      ||+|+||||++++++|||.|+|.++|+++| ......|.+|||.||+||+.||||+|++...+.   +..++||++||||
T Consensus       196 FV~GryIGgaeeV~~LnE~GkL~~lL~~~p-~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~---~~~~~rC~~CNEN  271 (281)
T KOG2824|consen  196 FVKGRYIGGAEEVVRLNEEGKLGKLLKGIP-CEGGGVCESCGGARFLPCSNCHGSCKVHEEEED---DGGVLRCLECNEN  271 (281)
T ss_pred             EEccEEeccHHHhhhhhhcchHHHHHhcCC-CCCCCcCCCcCCcceEecCCCCCceeeeeeccC---CCcEEECcccCCC
Confidence            999999999999999999999999999999 455689999999999999999999999984221   1259999999999


Q ss_pred             ccccCCCCC
Q 047313          166 GLVKCPFCS  174 (174)
Q Consensus       166 Gl~~C~~C~  174 (174)
                      ||||||.|+
T Consensus       272 GLvrCp~Cs  280 (281)
T KOG2824|consen  272 GLVRCPVCS  280 (281)
T ss_pred             CceeCCccC
Confidence            999999996

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=100.00  E-value=6.5e-54  Score=331.07  Aligned_cols=144  Identities=56%  Similarity=1.057  Sum_probs=135.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC---CCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG---RVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~---~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +||||||||++||++||+|.+||++|++++|+|+++||++|+++++||+++++.   +.++|||||+|+||||+|++++|
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L   80 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL   80 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            599999999999999999999999999999999999999999999999999873   58999999999999999999999


Q ss_pred             hhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccccC
Q 047313          102 HEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKC  170 (174)
Q Consensus       102 ~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~C  170 (174)
                      |++|+|.++|+.++...+...|++|||.|||||+.||||+|++.++.+.  ...++||++|||||||||
T Consensus        81 ~e~G~L~~lL~~~~~~~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~--~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          81 NESGELRKLLKGIRARAGGGVCEGCGGARFVPCSECNGSCKVFAENATA--AGGFLRCPECNENGLVRC  147 (147)
T ss_pred             HHcCCHHHHHhhcccccCCCCCCCCCCcCeEECCCCCCcceEEeccCcc--cccEEECCCCCccccccC
Confidence            9999999999999888888899999999999999999999999988542  125899999999999999

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.93  E-value=6.6e-26  Score=162.41  Aligned_cols=88  Identities=23%  Similarity=0.402  Sum_probs=84.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC---CCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS---GRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g---~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .|+||+||++|+|++...|++++++|++++|+|+++||++|++.+++|+++++   +..++|||||+|+||||+|++.+|
T Consensus         1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l   80 (92)
T cd03030           1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA   80 (92)
T ss_pred             CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence            38999999999999999999999999999999999999999999999999986   368999999999999999999999


Q ss_pred             hhcCchhHHhh
Q 047313          102 HEQGKLKKLLE  112 (174)
Q Consensus       102 ~e~G~L~~~L~  112 (174)
                      +++|+|.++|+
T Consensus        81 ~e~g~L~~lLk   91 (92)
T cd03030          81 KENNTLEEFLK   91 (92)
T ss_pred             HhCCCHHHHhC
Confidence            99999999985

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.91  E-value=7.9e-24  Score=152.70  Aligned_cols=89  Identities=22%  Similarity=0.332  Sum_probs=82.3

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      .++++||||+++. ..++.||+|.+|+++|++++|+|+++||..+++.+++|++++| +.++|+|||||++|||+|++++
T Consensus         9 i~~~~Vvvf~kg~-~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg-~~tvP~vfi~g~~iGG~ddl~~   86 (97)
T TIGR00365         9 IKENPVVLYMKGT-PQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSN-WPTIPQLYVKGEFVGGCDIIME   86 (97)
T ss_pred             hccCCEEEEEccC-CCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhC-CCCCCEEEECCEEEeChHHHHH
Confidence            6789999998853 2345799999999999999999999999999999999999998 8999999999999999999999


Q ss_pred             hhhcCchhHHh
Q 047313          101 LHEQGKLKKLL  111 (174)
Q Consensus       101 l~e~G~L~~~L  111 (174)
                      |+++|+|.++|
T Consensus        87 l~~~g~L~~~l   97 (97)
T TIGR00365        87 MYQSGELQTLL   97 (97)
T ss_pred             HHHCcChHHhC
Confidence            99999999876

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.91  E-value=6.9e-24  Score=153.55  Aligned_cols=89  Identities=21%  Similarity=0.375  Sum_probs=81.1

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH---HHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME---FRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~---~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      +.+++|+||+++      .||+|.+++++|++++++|+++||..++.   .++++.+++| +.++|+|||+|++|||+++
T Consensus         5 i~~~~Vvvysk~------~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg-~~tvP~Vfi~g~~iGG~dd   77 (99)
T TIGR02189         5 VSEKAVVIFSRS------SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC-SPAVPAVFVGGKLVGGLEN   77 (99)
T ss_pred             hccCCEEEEECC------CCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcC-CCCcCeEEECCEEEcCHHH
Confidence            567899999998      79999999999999999999999988755   5566777787 9999999999999999999


Q ss_pred             hhhhhhcCchhHHhhcCCC
Q 047313           98 VVGLHEQGKLKKLLEGIPR  116 (174)
Q Consensus        98 l~~l~e~G~L~~~L~~~~~  116 (174)
                      +++|+++|+|.++|+..++
T Consensus        78 l~~l~~~G~L~~~l~~~~~   96 (99)
T TIGR02189        78 VMALHISGSLVPMLKQAGA   96 (99)
T ss_pred             HHHHHHcCCHHHHHHHhCc
Confidence            9999999999999988654

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>PRK10824 glutaredoxin-4; Provisional

Probab=99.91  E-value=5.7e-24  Score=158.09  Aligned_cols=96  Identities=19%  Similarity=0.279  Sum_probs=87.3

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      .+.+++||||+++. -..+.||+|.+|+++|++++++|.++||..+++.+++|++++| ++|+|||||||++|||+|+++
T Consensus        11 ~I~~~~Vvvf~Kg~-~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg-~~TVPQIFI~G~~IGG~ddl~   88 (115)
T PRK10824         11 QIAENPILLYMKGS-PKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVDGELVGGCDIVI   88 (115)
T ss_pred             HHhcCCEEEEECCC-CCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhC-CCCCCeEEECCEEEcChHHHH
Confidence            36889999999852 1235799999999999999999999999999999999999998 999999999999999999999


Q ss_pred             hhhhcCchhHHhhcCCCC
Q 047313          100 GLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus       100 ~l~e~G~L~~~L~~~~~~  117 (174)
                      +|+++|+|.++|+..++.
T Consensus        89 ~l~~~G~L~~lL~~~~~~  106 (115)
T PRK10824         89 EMYQRGELQQLIKETAAK  106 (115)
T ss_pred             HHHHCCCHHHHHHHHHhh
Confidence            999999999999876653

>PHA03050 glutaredoxin; Provisional

Probab=99.90  E-value=2.2e-23  Score=153.33  Aligned_cols=91  Identities=21%  Similarity=0.289  Sum_probs=84.6

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCC---cEEEEECCC---CHHHHHHHHHhcCCCCCCcEEEECCEEEec
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKV---TFYERDVSL---HMEFRDELWSSLSGRVIPPRLFIKGRYIGG   94 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v---~~~e~Dv~~---~~~~~~el~~~~g~~~~~P~vFI~G~~IGG   94 (174)
                      +.+++|+||+++      +||+|.+|+++|++++|   +|+++||..   +.+.+++|.+++| +.++|+|||+|++|||
T Consensus        10 i~~~~V~vys~~------~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG-~~tVP~IfI~g~~iGG   82 (108)
T PHA03050         10 LANNKVTIFVKF------TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG-GRTVPRIFFGKTSIGG   82 (108)
T ss_pred             hccCCEEEEECC------CChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcC-CCCcCEEEECCEEEeC
Confidence            567899999998      69999999999999999   799999986   6789999999998 8999999999999999


Q ss_pred             cchhhhhhhcCchhHHhhcCCCCC
Q 047313           95 ADEVVGLHEQGKLKKLLEGIPRNL  118 (174)
Q Consensus        95 ~del~~l~e~G~L~~~L~~~~~~~  118 (174)
                      ++++++|+++|+|.++|+.+++..
T Consensus        83 ~ddl~~l~~~g~L~~~l~~~~~~~  106 (108)
T PHA03050         83 YSDLLEIDNMDALGDILSSIGVLR  106 (108)
T ss_pred             hHHHHHHHHcCCHHHHHHHccccc
Confidence            999999999999999999887653

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.87  E-value=4.5e-22  Score=141.35  Aligned_cols=86  Identities=24%  Similarity=0.356  Sum_probs=78.5

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      +.+++||||+++. ...+.||+|.+|+++|++++++|+++||..+++++++|.+++| ..++|+|||||++|||++++++
T Consensus         5 i~~~~vvvf~k~~-~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g-~~tvP~vfi~g~~iGG~~~l~~   82 (90)
T cd03028           5 IKENPVVLFMKGT-PEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN-WPTFPQLYVNGELVGGCDIVKE   82 (90)
T ss_pred             hccCCEEEEEcCC-CCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhC-CCCCCEEEECCEEEeCHHHHHH
Confidence            4678999998852 1234799999999999999999999999999999999999998 8999999999999999999999


Q ss_pred             hhhcCchh
Q 047313          101 LHEQGKLK  108 (174)
Q Consensus       101 l~e~G~L~  108 (174)
                      ||++|+|+
T Consensus        83 l~~~g~L~   90 (90)
T cd03028          83 MHESGELQ   90 (90)
T ss_pred             HHHcCCcC
Confidence            99999985

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.87  E-value=7.4e-22  Score=135.91  Aligned_cols=79  Identities=35%  Similarity=0.513  Sum_probs=76.0

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQG  105 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~G  105 (174)
                      |+||+++      +||+|.+|+++|++++++|+++||..+++.++++.+++| ..++|+|||+|++|||++++.+|+++|
T Consensus         1 v~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g-~~~vP~i~i~g~~igg~~~~~~~~~~g   73 (79)
T TIGR02181         1 VTIYTKP------YCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSG-RRTVPQIFIGDVHVGGCDDLYALDREG   73 (79)
T ss_pred             CEEEecC------CChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhC-CCCcCEEEECCEEEcChHHHHHHHHcC
Confidence            6899997      799999999999999999999999999999999999988 999999999999999999999999999


Q ss_pred             chhHHh
Q 047313          106 KLKKLL  111 (174)
Q Consensus       106 ~L~~~L  111 (174)
                      +|+++|
T Consensus        74 ~l~~~l   79 (79)
T TIGR02181        74 KLDPLL   79 (79)
T ss_pred             ChhhhC
Confidence            999876

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>PRK10638 glutaredoxin 3; Provisional

Probab=99.86  E-value=2.2e-21  Score=135.32  Aligned_cols=81  Identities=32%  Similarity=0.501  Sum_probs=77.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~  104 (174)
                      +|+||+++      +|++|.+|+.+|+.++++|+++||..+++.++++.+++| ..++|+||++|++|||++++.+|+++
T Consensus         3 ~v~ly~~~------~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g-~~~vP~i~~~g~~igG~~~~~~~~~~   75 (83)
T PRK10638          3 NVEIYTKA------TCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSG-RTTVPQIFIDAQHIGGCDDLYALDAR   75 (83)
T ss_pred             cEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEeCHHHHHHHHHc
Confidence            79999997      799999999999999999999999999988999999988 89999999999999999999999999


Q ss_pred             CchhHHhh
Q 047313          105 GKLKKLLE  112 (174)
Q Consensus       105 G~L~~~L~  112 (174)
                      |+|.++|+
T Consensus        76 g~l~~~~~   83 (83)
T PRK10638         76 GGLDPLLK   83 (83)
T ss_pred             CCHHHHhC
Confidence            99999884

>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2.3e-20  Score=136.42  Aligned_cols=91  Identities=25%  Similarity=0.426  Sum_probs=80.8

Q ss_pred             CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEecc
Q 047313           19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGA   95 (174)
Q Consensus        19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~   95 (174)
                      ....+++||||+++      .|++|.+++.+|...++.+..++++.+   .++++.|.+++| ++++|+|||+|++|||.
T Consensus         9 ~~i~~~~VVifSKs------~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg-~~tvP~vFI~Gk~iGG~   81 (104)
T KOG1752|consen    9 KMISENPVVIFSKS------SCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTG-QRTVPNVFIGGKFIGGA   81 (104)
T ss_pred             HHhhcCCEEEEECC------cCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcC-CCCCCEEEECCEEEcCH
Confidence            34688999999998      799999999999999998776666543   578888888888 99999999999999999


Q ss_pred             chhhhhhhcCchhHHhhcCCC
Q 047313           96 DEVVGLHEQGKLKKLLEGIPR  116 (174)
Q Consensus        96 del~~l~e~G~L~~~L~~~~~  116 (174)
                      +++++||.+|+|.++|+.+.+
T Consensus        82 ~dl~~lh~~G~L~~~l~~~~~  102 (104)
T KOG1752|consen   82 SDLMALHKSGELVPLLKEAGA  102 (104)
T ss_pred             HHHHHHHHcCCHHHHHHHhhc
Confidence            999999999999999988665

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.83  E-value=5.2e-20  Score=124.89  Aligned_cols=75  Identities=31%  Similarity=0.483  Sum_probs=69.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~  104 (174)
                      +|+||+++      .||+|.+|+++|++++|+|+++||..+++.++++.+..|...++|+|||+|++|||++++++|+++
T Consensus         1 ~i~ly~~~------~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~   74 (75)
T cd03418           1 KVEIYTKP------NCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERK   74 (75)
T ss_pred             CEEEEeCC------CChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhC
Confidence            58999997      799999999999999999999999999999999999888334999999999999999999999998


Q ss_pred             C
Q 047313          105 G  105 (174)
Q Consensus       105 G  105 (174)
                      |
T Consensus        75 g   75 (75)
T cd03418          75 G   75 (75)
T ss_pred             c
Confidence            7

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.83  E-value=4e-20  Score=125.80  Aligned_cols=73  Identities=23%  Similarity=0.501  Sum_probs=69.3

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      ++|+||+++      .|++|.+|+++|++++|+|+++||..++..+++|++++| ..++|+|||||++|||++++.+|++
T Consensus         1 ~~v~ly~~~------~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g-~~~vP~v~i~~~~iGg~~~~~~~~~   73 (73)
T cd03027           1 GRVTIYSRL------GCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTG-SSVVPQIFFNEKLVGGLTDLKSLEE   73 (73)
T ss_pred             CEEEEEecC------CChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEeCHHHHHhhcC
Confidence            479999998      799999999999999999999999999999999999998 7899999999999999999999875

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>PTZ00062 glutaredoxin; Provisional

Probab=99.83  E-value=3.4e-20  Score=150.20  Aligned_cols=93  Identities=18%  Similarity=0.269  Sum_probs=84.4

Q ss_pred             CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      ..+.+++|+||+++.. ..+.|++|.+++.+|++++|+|+++||..|++.+++|++++| ++++|||||||++|||+|++
T Consensus       108 ~li~~~~Vvvf~Kg~~-~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg-~~TvPqVfI~G~~IGG~d~l  185 (204)
T PTZ00062        108 RLIRNHKILLFMKGSK-TFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSN-WPTYPQLYVNGELIGGHDII  185 (204)
T ss_pred             HHHhcCCEEEEEccCC-CCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhC-CCCCCeEEECCEEEcChHHH
Confidence            3578899999998521 124799999999999999999999999999999999999998 99999999999999999999


Q ss_pred             hhhhhcCchhHHhhc
Q 047313           99 VGLHEQGKLKKLLEG  113 (174)
Q Consensus        99 ~~l~e~G~L~~~L~~  113 (174)
                      ++|+++|+|.++|..
T Consensus       186 ~~l~~~G~L~~~l~~  200 (204)
T PTZ00062        186 KELYESNSLRKVIPD  200 (204)
T ss_pred             HHHHHcCChhhhhhh
Confidence            999999999999864

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=3.6e-19  Score=128.04  Aligned_cols=94  Identities=22%  Similarity=0.289  Sum_probs=86.8

Q ss_pred             CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCC-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFK-VTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      ..+.+++|+||.+... ..+.|.+..++..+|...| ++|..+||..|+++|+.|++.++ |+|+||+||+|++|||.|-
T Consensus        10 ~~i~~n~VvLFMKGtp-~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~-WPT~PQLyi~GEfvGG~DI   87 (105)
T COG0278          10 KQIKENPVVLFMKGTP-EFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSN-WPTFPQLYVNGEFVGGCDI   87 (105)
T ss_pred             HHhhcCceEEEecCCC-CCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcC-CCCCceeeECCEEeccHHH
Confidence            3468899999999753 4567999999999999999 89999999999999999999999 9999999999999999999


Q ss_pred             hhhhhhcCchhHHhhcC
Q 047313           98 VVGLHEQGKLKKLLEGI  114 (174)
Q Consensus        98 l~~l~e~G~L~~~L~~~  114 (174)
                      +.+|+++|+|+++|+..
T Consensus        88 v~Em~q~GELq~~l~~~  104 (105)
T COG0278          88 VREMYQSGELQTLLKEA  104 (105)
T ss_pred             HHHHHHcchHHHHHHhc
Confidence            99999999999999764

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=5.3e-19  Score=123.38  Aligned_cols=77  Identities=30%  Similarity=0.480  Sum_probs=68.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .|+||+++      +||+|.+++++|+++|+.|+++|+.+++  +.++.+++..| .+++|||||||++|||.+++.+++
T Consensus         2 ~v~iyt~~------~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g-~~tvP~I~i~~~~igg~~d~~~~~   74 (80)
T COG0695           2 NVTIYTKP------GCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKG-QRTVPQIFIGGKHVGGCDDLDALE   74 (80)
T ss_pred             CEEEEECC------CCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCC-CCCcCEEEECCEEEeCcccHHHHH
Confidence            58999998      7999999999999999999999999887  55555666656 999999999999999999999999


Q ss_pred             hcCchh
Q 047313          103 EQGKLK  108 (174)
Q Consensus       103 e~G~L~  108 (174)
                      ..+.|.
T Consensus        75 ~~~~l~   80 (80)
T COG0695          75 AKGKLD   80 (80)
T ss_pred             hhccCC
Confidence            988763

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.77  E-value=2.4e-18  Score=118.43  Aligned_cols=79  Identities=27%  Similarity=0.522  Sum_probs=71.0

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCc--EEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT--FYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~--~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      |++|+++      .||+|.+++.+|++++++  |+.++|..+   .+.++++.+++| ..++|+|||+|++|||++++.+
T Consensus         1 V~~f~~~------~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g-~~~vP~v~i~g~~igg~~~~~~   73 (84)
T TIGR02180         1 VVVFSKS------YCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITG-QRTVPNIFINGKFIGGCSDLLA   73 (84)
T ss_pred             CEEEECC------CChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhC-CCCCCeEEECCEEEcCHHHHHH
Confidence            6899998      699999999999999998  888888653   566777888887 8999999999999999999999


Q ss_pred             hhhcCchhHHh
Q 047313          101 LHEQGKLKKLL  111 (174)
Q Consensus       101 l~e~G~L~~~L  111 (174)
                      |+++|+|.++|
T Consensus        74 ~~~~g~l~~~~   84 (84)
T TIGR02180        74 LYKSGKLAELL   84 (84)
T ss_pred             HHHcCChhhhC
Confidence            99999999876

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.76  E-value=2.8e-18  Score=117.94  Aligned_cols=79  Identities=32%  Similarity=0.560  Sum_probs=71.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +|++|+++      .||+|..++.+|++++++|+++++..+   ...++++++++| ..++|+||++|++|||++++.+|
T Consensus         1 ~v~~y~~~------~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g-~~~~P~v~~~g~~igg~~~~~~~   73 (82)
T cd03419           1 PVVVFSKS------YCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTG-QRTVPNVFIGGKFIGGCDDLMAL   73 (82)
T ss_pred             CEEEEEcC------CCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhC-CCCCCeEEECCEEEcCHHHHHHH
Confidence            58999987      799999999999999999998888655   556778888888 99999999999999999999999


Q ss_pred             hhcCchhHH
Q 047313          102 HEQGKLKKL  110 (174)
Q Consensus       102 ~e~G~L~~~  110 (174)
                      .++|+|.++
T Consensus        74 ~~~g~l~~~   82 (82)
T cd03419          74 HKSGKLVKL   82 (82)
T ss_pred             HHcCCccCC
Confidence            999999864

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.76  E-value=4.1e-18  Score=115.43  Aligned_cols=70  Identities=23%  Similarity=0.392  Sum_probs=63.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +|+||+++      +||+|.+|+++|++++|+|+++||..+.. .++++.++| ..++|+|||||++|||++++.++.
T Consensus         2 ~v~lys~~------~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g-~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTKP------GCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTG-AMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEECC------CCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhC-CCCcCeEEECCEEEeCHHHHHHHh
Confidence            69999998      79999999999999999999999988874 567777777 899999999999999999998764

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=99.76  E-value=2.5e-18  Score=124.67  Aligned_cols=88  Identities=24%  Similarity=0.488  Sum_probs=74.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC--------CCCCCcEEEECCEEEeccc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS--------GRVIPPRLFIKGRYIGGAD   96 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g--------~~~~~P~vFI~G~~IGG~d   96 (174)
                      .|.||+|+++|.++.-..+.++..||+.++|+|+++||+++++.|+.+++..|        +...+||||++++|+|+++
T Consensus         2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye   81 (99)
T PF04908_consen    2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE   81 (99)
T ss_dssp             SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred             EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence            38899999999999999999999999999999999999999999999999883        3556689999999999999


Q ss_pred             hhhhhhhcCchhHHhh
Q 047313           97 EVVGLHEQGKLKKLLE  112 (174)
Q Consensus        97 el~~l~e~G~L~~~L~  112 (174)
                      ++.+++|+++|.++|+
T Consensus        82 ~f~ea~E~~~L~~fL~   97 (99)
T PF04908_consen   82 DFEEANENGELEEFLK   97 (99)
T ss_dssp             HHHHHHCTT-HHHHHT
T ss_pred             HHHHHHhhCHHHHHhC
Confidence            9999999999999986

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.74  E-value=1.4e-17  Score=115.22  Aligned_cols=73  Identities=23%  Similarity=0.340  Sum_probs=65.2

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      ..+++|+||+++      .|++|.+++++|+++||+|+++||..+... +++.+.+| ..++|+|||||++|||++++.+
T Consensus         5 ~~~~~V~ly~~~------~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g-~~~vP~i~i~g~~igG~~~l~~   76 (79)
T TIGR02190         5 RKPESVVVFTKP------GCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTG-ATTVPQVFIGGKLIGGSDELEA   76 (79)
T ss_pred             CCCCCEEEEECC------CCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHC-CCCcCeEEECCEEEcCHHHHHH
Confidence            456899999998      799999999999999999999999887664 56777777 8999999999999999999876


Q ss_pred             h
Q 047313          101 L  101 (174)
Q Consensus       101 l  101 (174)
                      +
T Consensus        77 ~   77 (79)
T TIGR02190        77 Y   77 (79)
T ss_pred             H
Confidence            5

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.74  E-value=2.3e-17  Score=109.01  Aligned_cols=72  Identities=35%  Similarity=0.593  Sum_probs=68.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      +|+||+++      .||+|.+++.+|++++++|+++|+..+++.+++|.+++| ..++|+||++|++|||++++++|++
T Consensus         1 ~v~ly~~~------~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~-~~~~P~~~~~~~~igg~~~~~~~~~   72 (72)
T cd02066           1 KVVVFSKS------TCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSG-WPTVPQIFINGEFIGGYDDLKALHE   72 (72)
T ss_pred             CEEEEECC------CCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEecHHHHHHhhC
Confidence            58999998      699999999999999999999999999999999999988 8999999999999999999998874

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.73  E-value=2.4e-17  Score=116.06  Aligned_cols=74  Identities=15%  Similarity=0.297  Sum_probs=65.5

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECCEEEeccchhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G~~IGG~del~   99 (174)
                      |+||+++      +||+|.+|+++|+++     ++.|+++||..+...++++.+.+|. ..++|+|||||++|||+++|+
T Consensus         2 V~vys~~------~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~   75 (86)
T TIGR02183         2 VVIFGRP------GCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFE   75 (86)
T ss_pred             EEEEeCC------CCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHH
Confidence            8999998      799999999999998     4679999998777677888888872 279999999999999999999


Q ss_pred             hhhhcC
Q 047313          100 GLHEQG  105 (174)
Q Consensus       100 ~l~e~G  105 (174)
                      ++++++
T Consensus        76 ~~~~~~   81 (86)
T TIGR02183        76 QLVKEN   81 (86)
T ss_pred             HHHHhc
Confidence            998764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.72  E-value=2.9e-17  Score=114.84  Aligned_cols=74  Identities=14%  Similarity=0.233  Sum_probs=67.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECCEEEeccchh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G~~IGG~del   98 (174)
                      +|+||+++      +|++|.+|+++|++     .+++|+++||..+...++++.+.+|. ..++|+|||||++|||++++
T Consensus         2 ~v~iy~~~------~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~   75 (85)
T PRK11200          2 FVVIFGRP------GCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDF   75 (85)
T ss_pred             EEEEEeCC------CChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHH
Confidence            68999998      79999999999999     89999999999888778889888872 37999999999999999999


Q ss_pred             hhhhhc
Q 047313           99 VGLHEQ  104 (174)
Q Consensus        99 ~~l~e~  104 (174)
                      .++++.
T Consensus        76 ~~~~~~   81 (85)
T PRK11200         76 EAYVKE   81 (85)
T ss_pred             HHHHHH
Confidence            998764

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.69  E-value=1.5e-16  Score=104.26  Aligned_cols=60  Identities=28%  Similarity=0.458  Sum_probs=57.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI   92 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I   92 (174)
                      |+||+++      +||+|.+++++|++++++|+++||+.+++.+++|++++| ..++|+|||||++|
T Consensus         1 V~vy~~~------~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g-~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTKP------GCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSG-VRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEEST------TSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHS-SSSSSEEEETTEEE
T ss_pred             cEEEEcC------CCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcC-CCccCEEEECCEEC
Confidence            7899997      899999999999999999999999999999999999997 99999999999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=2.4e-16  Score=128.16  Aligned_cols=94  Identities=26%  Similarity=0.311  Sum_probs=87.1

Q ss_pred             CCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           18 CPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        18 ~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      ...+.+++|+||.++.. ..+.|.+.+.+..+|++++|+|...||..|++.|+-+++++. |+|+|||||+|++|||.|-
T Consensus       133 ~~lv~a~~v~lFmKG~p-~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSd-WPTfPQlyI~GEFiGGlDI  210 (227)
T KOG0911|consen  133 EKLVKAKPVMLFMKGTP-EEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSD-WPTFPQLYVKGEFIGGLDI  210 (227)
T ss_pred             HHhcccCeEEEEecCCC-CcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcC-CCCccceeECCEeccCcHH
Confidence            34678899999999853 456799999999999999999999999999999999999999 9999999999999999999


Q ss_pred             hhhhhhcCchhHHhhc
Q 047313           98 VVGLHEQGKLKKLLEG  113 (174)
Q Consensus        98 l~~l~e~G~L~~~L~~  113 (174)
                      +.+|+++|+|...|+.
T Consensus       211 l~~m~~~geL~~~l~~  226 (227)
T KOG0911|consen  211 LKEMHEKGELVYTLKE  226 (227)
T ss_pred             HHHHhhcccHHHHhhc
Confidence            9999999999999875

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.63  E-value=1.5e-15  Score=134.45  Aligned_cols=86  Identities=15%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--------hcCCCCCCcEEEECCEEEecc
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS--------SLSGRVIPPRLFIKGRYIGGA   95 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~--------~~g~~~~~P~vFI~G~~IGG~   95 (174)
                      .+|+|||++      +||+|.++|++|+++||+|+++||+.++...+.+.+        .+| ..++|||||||++|||+
T Consensus         2 ~~V~vys~~------~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g-~~tvP~ifi~~~~igGf   74 (410)
T PRK12759          2 VEVRIYTKT------NCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEH-IRTVPQIFVGDVHIGGY   74 (410)
T ss_pred             CcEEEEeCC------CCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCC-CCccCeEEECCEEEeCc
Confidence            369999998      799999999999999999999999988765443333        245 88999999999999999


Q ss_pred             chhhhhhhcCchhHHhhcCCCCC
Q 047313           96 DEVVGLHEQGKLKKLLEGIPRNL  118 (174)
Q Consensus        96 del~~l~e~G~L~~~L~~~~~~~  118 (174)
                      ++++.  .+|+|.++|++.+--+
T Consensus        75 ~~l~~--~~g~l~~~~~~~~~~~   95 (410)
T PRK12759         75 DNLMA--RAGEVIARVKGSSLTT   95 (410)
T ss_pred             hHHHH--HhCCHHHHhcCCcccc
Confidence            99987  8999999999876544

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.55  E-value=2.2e-14  Score=97.31  Aligned_cols=64  Identities=16%  Similarity=0.237  Sum_probs=57.9

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE-EEeccch
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR-YIGGADE   97 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~-~IGG~de   97 (174)
                      |+||+++      +||+|.+++++|++++|+|+++||..++..++++++. | ..++|+|||+|. +|||++.
T Consensus         1 v~ly~~~------~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g-~~~vP~v~~~g~~~~~G~~~   65 (72)
T TIGR02194         1 ITVYSKN------NCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-G-FRQVPVIVADGDLSWSGFRP   65 (72)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-C-CcccCEEEECCCcEEeccCH
Confidence            6899997      8999999999999999999999999999999998864 6 889999999775 9999864

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.53  E-value=6.8e-14  Score=97.72  Aligned_cols=65  Identities=15%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      +|+||+++      +|++|.+++.+|+++||+|+++||..+++..++++. .| ..++|+|+|++..|+|++.
T Consensus         2 ~v~lYt~~------~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g-~~~vPvv~i~~~~~~Gf~~   66 (81)
T PRK10329          2 RITIYTRN------DCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QG-FRQLPVVIAGDLSWSGFRP   66 (81)
T ss_pred             EEEEEeCC------CCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cC-CCCcCEEEECCEEEecCCH
Confidence            69999997      799999999999999999999999999998888876 45 8999999999999999954

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.31  E-value=2e-11  Score=80.80  Aligned_cols=66  Identities=29%  Similarity=0.332  Sum_probs=60.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      +|+||+++      .|++|.+++.+|+..+++|.++|+..+++..+++.+.+| ..++|+++++|+.++|++.
T Consensus         1 ~i~lf~~~------~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~-~~~vP~~~~~~~~~~g~~~   66 (74)
T TIGR02196         1 KVKVYTTP------WCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLG-QRGVPVIVIGHKIIVGFDP   66 (74)
T ss_pred             CEEEEcCC------CChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhC-CCcccEEEECCEEEeeCCH
Confidence            48899998      699999999999999999999999999888888888887 8899999999999988743

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.25  E-value=7.5e-11  Score=77.93  Aligned_cols=66  Identities=23%  Similarity=0.247  Sum_probs=60.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      +|++|+++      .|++|.+++.+|+.++++|..+|+..+....+++.++.+ ..++|+|+++|+.|+|++.
T Consensus         1 ~v~l~~~~------~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~-~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTKP------DCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNG-YRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeCC------CChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcC-CcccCEEEECCEEEecCCH
Confidence            48999987      699999999999999999999999988888888988876 8899999999999999865

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.08  E-value=1.3e-09  Score=73.33  Aligned_cols=66  Identities=15%  Similarity=0.246  Sum_probs=56.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGAD   96 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~d   96 (174)
                      +|+||+++      .|++|.+++.+|+.++++|+.+|+..++...+++.++..+..++|+|++ +|+.+....
T Consensus         1 ~v~ly~~~------~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~   67 (77)
T TIGR02200         1 TITVYGTT------WCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS   67 (77)
T ss_pred             CEEEEECC------CChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence            58999998      6999999999999999999999999998888888888623889999976 667776554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>KOG4023 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=1.8e-09  Score=77.69  Aligned_cols=93  Identities=23%  Similarity=0.340  Sum_probs=81.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc-------CCCCCCcEEEECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-------SGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~-------g~~~~~P~vFI~G~~IGG~de   97 (174)
                      .|.+|++|.++.+..-..-.++..+|+.+.|.|+++||.+....++++....       .|.+..||||-+++|.|+||.
T Consensus         3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye~   82 (108)
T KOG4023|consen    3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYEL   82 (108)
T ss_pred             ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHHH
Confidence            4789999999988888889999999999999999999999888777765543       237789999999999999999


Q ss_pred             hhhhhhcCchhHHhhcCCCC
Q 047313           98 VVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        98 l~~l~e~G~L~~~L~~~~~~  117 (174)
                      +.+..|++-|.++|.-.+..
T Consensus        83 F~ea~E~ntl~eFL~lap~~  102 (108)
T KOG4023|consen   83 FFEAVEQNTLQEFLGLAPPP  102 (108)
T ss_pred             HHHHHHHHHHHHHHccCCCc
Confidence            99999999999999877654

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.87  E-value=9.6e-09  Score=67.87  Aligned_cols=58  Identities=12%  Similarity=0.134  Sum_probs=48.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG   93 (174)
                      +|++|+++      .|++|.+++.+|+..     ++.|..+|+..+++    +.+.+| ..++|+|+|+|++++
T Consensus         2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~-i~~vPti~i~~~~~~   64 (67)
T cd02973           2 NIEVFVSP------TCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYG-VMSVPAIVINGKVEF   64 (67)
T ss_pred             EEEEEECC------CCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcC-CcccCEEEECCEEEE
Confidence            58999998      699999999999875     68999999977654    455566 788999999999875

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.80  E-value=4.8e-08  Score=66.72  Aligned_cols=70  Identities=17%  Similarity=0.173  Sum_probs=56.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC--CEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK--GRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~--G~~IGG~del~~l~  102 (174)
                      ++||+.+      .|++|.+|+.+|+.+|++|+.+++..+.....++.+..+ ..++|++..+  |..+.+...+.+..
T Consensus         2 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p-~~~vP~l~~~~~~~~l~es~~I~~yL   73 (77)
T cd03041           2 LELYEFE------GSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGG-KVQVPYLVDPNTGVQMFESADIVKYL   73 (77)
T ss_pred             ceEecCC------CCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCC-CCcccEEEeCCCCeEEEcHHHHHHHH
Confidence            6799987      799999999999999999999999877666778887766 7899999773  56666666655443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.68  E-value=1.6e-07  Score=63.60  Aligned_cols=67  Identities=18%  Similarity=0.233  Sum_probs=52.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC----CEEEeccchhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK----GRYIGGADEVVG  100 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~----G~~IGG~del~~  100 (174)
                      +|+||+..      .||+|.+++.+|..+||+|+++++..  ..+.+++ ..+ ..++|+|+++    |..|.....+.+
T Consensus         1 ~i~Ly~~~------~~p~c~kv~~~L~~~gi~y~~~~~~~--~~~~~~~-~~~-~~~vP~l~~~~~~~~~~l~eS~~I~~   70 (77)
T cd03040           1 KITLYQYK------TCPFCCKVRAFLDYHGIPYEVVEVNP--VSRKEIK-WSS-YKKVPILRVESGGDGQQLVDSSVIIS   70 (77)
T ss_pred             CEEEEEcC------CCHHHHHHHHHHHHCCCceEEEECCc--hhHHHHH-HhC-CCccCEEEECCCCCccEEEcHHHHHH
Confidence            58899987      79999999999999999999999843  3344553 344 7899999987    666666665544


Q ss_pred             h
Q 047313          101 L  101 (174)
Q Consensus       101 l  101 (174)
                      .
T Consensus        71 y   71 (77)
T cd03040          71 T   71 (77)
T ss_pred             H
Confidence            3

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.61  E-value=1.3e-07  Score=60.77  Aligned_cols=67  Identities=13%  Similarity=0.042  Sum_probs=54.6

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      +||+.+      .|++|.+++.+|+.++++|+.+++..+.....++++..+ ..++|.|+++|..+++...+.+
T Consensus         2 ~ly~~~------~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~P~l~~~~~~~~es~~I~~   68 (71)
T cd00570           2 KLYYFP------GSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNP-LGKVPVLEDGGLVLTESLAILE   68 (71)
T ss_pred             EEEeCC------CCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCC-CCCCCEEEECCEEEEcHHHHHH
Confidence            578876      699999999999999999999998755433336777766 8899999999999988776644

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=98.59  E-value=3e-07  Score=61.37  Aligned_cols=67  Identities=12%  Similarity=0.100  Sum_probs=53.0

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchhhhhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEVVGLH  102 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del~~l~  102 (174)
                      +||+..      .||+|.+++.+|..+|++|+++.+......  ...+..+ ..++|+|+++ |..+++...+.+..
T Consensus         2 ~Ly~~~------~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~-~~~vP~L~~~~~~~l~es~aI~~yL   69 (71)
T cd03037           2 KLYIYE------HCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIG-AKQVPILEKDDGSFMAESLDIVAFI   69 (71)
T ss_pred             ceEecC------CCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcC-CCccCEEEeCCCeEeehHHHHHHHH
Confidence            578876      699999999999999999999988755322  2234555 7789999997 88999888876654

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.53  E-value=5.4e-07  Score=63.27  Aligned_cols=75  Identities=15%  Similarity=0.149  Sum_probs=58.9

Q ss_pred             CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccch
Q 047313           19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADE   97 (174)
Q Consensus        19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~de   97 (174)
                      +|-..+.++||+.+      .|++|.+++.+|+.+|++|+.+++.... ..+++.+... ..++|+|.++ |..+.....
T Consensus        12 ~~~~~~~~~Ly~~~------~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np-~~~vPvL~~~~g~~l~eS~a   83 (89)
T cd03055          12 PPPVPGIIRLYSMR------FCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNP-QGKVPALEIDEGKVVYESLI   83 (89)
T ss_pred             CCCCCCcEEEEeCC------CCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCC-CCCcCEEEECCCCEEECHHH
Confidence            45677899999987      7999999999999999999999886542 2345666665 7899999998 777766655


Q ss_pred             hhhh
Q 047313           98 VVGL  101 (174)
Q Consensus        98 l~~l  101 (174)
                      +.+.
T Consensus        84 I~~y   87 (89)
T cd03055          84 ICEY   87 (89)
T ss_pred             HHHh
Confidence            5443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.41  E-value=3.2e-07  Score=67.41  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=41.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      |+||+++      .|++|++|+++|+++|++|+++|+..++..+++|.++.+
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~   46 (111)
T cd03036           1 LKFYEYP------KCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLE   46 (111)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHH
Confidence            6799997      899999999999999999999999988877877776654

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=98.36  E-value=2.1e-06  Score=57.10  Aligned_cols=68  Identities=13%  Similarity=0.072  Sum_probs=51.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++||+.+      .|++|.+++.+|+.+|++|+++++... ....++++... ..++|.+..+|..+.....+.+.
T Consensus         1 ~~ly~~~------~~~~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~~y   68 (73)
T cd03059           1 MTLYSGP------DDVYSHRVRIVLAEKGVSVEIIDVDPD-NPPEDLAELNP-YGTVPTLVDRDLVLYESRIIMEY   68 (73)
T ss_pred             CEEEECC------CChhHHHHHHHHHHcCCccEEEEcCCC-CCCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence            4789887      799999999999999999999888644 22346666655 77999998888766655555443

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.33  E-value=5.8e-06  Score=57.27  Aligned_cols=53  Identities=23%  Similarity=0.367  Sum_probs=43.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG   89 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G   89 (174)
                      +|++||++      +|+-|..++.+|+..    .+.++.+||..|++    +.++++  ..+|+|+++|
T Consensus         1 ~l~l~~k~------~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~--~~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTKP------GCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYG--YRIPVLHIDG   57 (81)
T ss_dssp             -EEEEE-S------SSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSC--TSTSEEEETT
T ss_pred             CEEEEcCC------CCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhc--CCCCEEEEcC
Confidence            58999987      999999999999964    46799999998877    555665  6899999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.31  E-value=5.7e-07  Score=64.99  Aligned_cols=46  Identities=15%  Similarity=0.155  Sum_probs=40.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      |+||+++      +|++|++|+++|+++|++|+++||..++...++|.++++
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~   46 (105)
T cd02977           1 ITIYGNP------NCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLA   46 (105)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHH
Confidence            5799997      899999999999999999999999887777777777765

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.25  E-value=2.2e-06  Score=64.86  Aligned_cols=45  Identities=24%  Similarity=0.400  Sum_probs=40.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      |+||+++      .|++|++|+++|+++||+|+++|+..++..+++|.+..
T Consensus         2 i~iY~~~------~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l   46 (131)
T PRK01655          2 VTLFTSP------SCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQIL   46 (131)
T ss_pred             EEEEeCC------CChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHH
Confidence            7899997      89999999999999999999999998888777776654

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.21  E-value=4.1e-06  Score=55.43  Aligned_cols=66  Identities=18%  Similarity=0.193  Sum_probs=49.4

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEV   98 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del   98 (174)
                      ++||+.+      .|++|.+++.+|..++++|+.+.+...  .....++.+... ..++|.+.+ +|..+.....+
T Consensus         1 ~~Ly~~~------~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~~l~es~aI   69 (74)
T cd03051           1 MKLYDSP------TAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNP-AGTVPVLELDDGTVITESVAI   69 (74)
T ss_pred             CEEEeCC------CCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCC-CCCCCEEEeCCCCEEecHHHH
Confidence            3689986      699999999999999999988887542  233456777766 789999997 55555444433

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=98.18  E-value=7.7e-06  Score=54.61  Aligned_cols=64  Identities=20%  Similarity=0.248  Sum_probs=50.1

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEV   98 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del   98 (174)
                      +||+.+      .|++|.+++.+|..+|++|+.+++..... ..++.++.. ..++|.+..+ |..|.....+
T Consensus         2 ~ly~~~------~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np-~~~vP~L~~~~g~~l~eS~aI   66 (71)
T cd03060           2 ILYSFR------RCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASP-KGTVPVLVLGNGTVIEESLDI   66 (71)
T ss_pred             EEEecC------CCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCC-CCCCCEEEECCCcEEecHHHH
Confidence            689887      69999999999999999999988865322 356777665 7899999996 7776554443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.15  E-value=9.1e-06  Score=54.20  Aligned_cols=67  Identities=13%  Similarity=0.244  Sum_probs=51.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      ++||+.+      .|++|.+++.+|+.+|++|+.+++..  ......++.+... ...+|.+.++|..|.....+.
T Consensus         1 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~   69 (74)
T cd03045           1 IDLYYLP------GSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNP-QHTVPTLVDNGFVLWESHAIL   69 (74)
T ss_pred             CEEEeCC------CCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCc-CCCCCEEEECCEEEEcHHHHH
Confidence            3689887      69999999999999999999888763  3334567777765 679999998887665544443

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=98.14  E-value=6.6e-06  Score=55.66  Aligned_cols=68  Identities=15%  Similarity=0.172  Sum_probs=56.1

Q ss_pred             EEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           28 FYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        28 lYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      ||+.+      .|++|.+++.+|+.+||+|+.+++..... ..++.++.. ..++|.+..+|..|.+...+.+..+
T Consensus         1 Ly~~~------~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p-~~~vPvL~~~g~~l~dS~~I~~yL~   68 (75)
T PF13417_consen    1 LYGFP------GSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNP-KGKVPVLVDDGEVLTDSAAIIEYLE   68 (75)
T ss_dssp             EEEET------TSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHST-TSBSSEEEETTEEEESHHHHHHHHH
T ss_pred             CCCcC------CChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcc-cccceEEEECCEEEeCHHHHHHHHH
Confidence            57776      68999999999999999999999875433 567777776 8899999999999988877765543

...

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=98.14  E-value=5.4e-06  Score=61.21  Aligned_cols=46  Identities=22%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      |+||+.+      +|++|++|+++|+++||+|+++|+..++..+++|.++..
T Consensus         1 i~iY~~~------~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~   46 (117)
T TIGR01617         1 IKVYGSP------NCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS   46 (117)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence            5799987      899999999999999999999999998888888876653

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=98.10  E-value=7.3e-06  Score=60.40  Aligned_cols=46  Identities=26%  Similarity=0.447  Sum_probs=40.4

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      |+||+.+      +|+.|++|+++|+++||+|+++|+..++..+++|.+...
T Consensus         2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~   47 (115)
T cd03032           2 IKLYTSP------SCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS   47 (115)
T ss_pred             EEEEeCC------CCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence            7899987      899999999999999999999999888777777766653

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.08  E-value=1.7e-05  Score=52.47  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      +++|+..      .|++|.+++.+|+.+|++|+++++...  .....++.+... ..++|.+.++|..|.....+.
T Consensus         1 ~~Ly~~~------~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~i~es~aI~   69 (73)
T cd03056           1 MKLYGFP------LSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNP-NGEVPVLELDGRVLAESNAIL   69 (73)
T ss_pred             CEEEeCC------CCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCC-CCCCCEEEECCEEEEcHHHHH
Confidence            3688886      689999999999999999999988642  334466777655 778999999988776555443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.01  E-value=4.8e-05  Score=51.39  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=43.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----CC--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----FK--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~   90 (174)
                      +|++|+++      .|++|..++.+|+.    ++  +.+..+|+..+++.    .+..| ..++|+++++|+
T Consensus         2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTSP------TCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEYG-IMAVPAIVINGD   62 (82)
T ss_pred             EEEEEECC------CCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHcC-CccCCEEEECCE
Confidence            58899988      59999999999864    33  67788898766653    33455 788999999997

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=98.01  E-value=8.9e-06  Score=61.72  Aligned_cols=45  Identities=18%  Similarity=0.420  Sum_probs=38.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      |+||+.+      .|+.|++|+++|+++||+|+++|+..++-.+++|.+..
T Consensus         2 i~iY~~~------~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l   46 (132)
T PRK13344          2 IKIYTIS------SCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL   46 (132)
T ss_pred             EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence            7899987      89999999999999999999999987765555555543

>PRK12559 transcriptional regulator Spx; Provisional

Probab=98.00  E-value=9.9e-06  Score=61.38  Aligned_cols=45  Identities=29%  Similarity=0.480  Sum_probs=39.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      |+||+.+      .|+.|++|+++|+++||+|+++|+..++-..++|.+.+
T Consensus         2 i~iY~~~------~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l   46 (131)
T PRK12559          2 VVLYTTA------SCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSIL   46 (131)
T ss_pred             EEEEeCC------CChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHH
Confidence            7899997      89999999999999999999999988766666665554

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=97.97  E-value=8.8e-06  Score=59.36  Aligned_cols=46  Identities=15%  Similarity=0.099  Sum_probs=39.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      |+||+.+      +|+.|++|+++|+++|++|+++|+..++-..++|.+++.
T Consensus         1 i~iy~~~------~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~   46 (105)
T cd03035           1 ITLYGIK------NCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA   46 (105)
T ss_pred             CEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence            6899997      899999999999999999999999888666666666553

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=97.89  E-value=1.6e-05  Score=58.75  Aligned_cols=46  Identities=17%  Similarity=0.169  Sum_probs=39.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      .|+||+.+      .|+.|++|+++|+++|++|+++|+..++-.+++|.+++
T Consensus         1 ~i~iy~~p------~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l   46 (113)
T cd03033           1 DIIFYEKP------GCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFF   46 (113)
T ss_pred             CEEEEECC------CCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHH
Confidence            37899997      89999999999999999999999987765566666554

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=97.89  E-value=0.00011  Score=49.00  Aligned_cols=60  Identities=13%  Similarity=0.151  Sum_probs=48.2

Q ss_pred             CCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           35 GIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        35 ~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      ++...|++|.+++.+|+.++++|+.+++....        .. ....+|.+.++|+.+.+...+.+..+
T Consensus        11 ~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~-p~g~vP~l~~~g~~l~es~~I~~yL~   70 (72)
T cd03054          11 GLPSLSPECLKVETYLRMAGIPYEVVFSSNPW--------RS-PTGKLPFLELNGEKIADSEKIIEYLK   70 (72)
T ss_pred             CCCCCCHHHHHHHHHHHhCCCceEEEecCCcc--------cC-CCcccCEEEECCEEEcCHHHHHHHHh
Confidence            44557999999999999999999999996532        33 36689999999999988877665443

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]

Probab=97.85  E-value=7e-05  Score=63.62  Aligned_cols=86  Identities=20%  Similarity=0.315  Sum_probs=68.8

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +-++++|.-.      |||+|.+||++|+-++|+|..+.|  |+-.+++++=- . ...+|.|.|+|+.+-+..-+..+.
T Consensus        88 ~L~l~LyQye------tCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk~S-s-ykKVPil~~~Geqm~dSsvIIs~l  157 (370)
T KOG3029|consen   88 PLDLVLYQYE------TCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIKWS-S-YKKVPILLIRGEQMVDSSVIISLL  157 (370)
T ss_pred             CceEEEEeec------cCchHHHHHHHHhhcCCceEEEEe--cchhhhhcccc-c-cccccEEEeccceechhHHHHHHH
Confidence            3589999875      899999999999999999999998  67777777533 2 788999999998776666655554


Q ss_pred             ------hcCchhHHhhcCCCCC
Q 047313          103 ------EQGKLKKLLEGIPRNL  118 (174)
Q Consensus       103 ------e~G~L~~~L~~~~~~~  118 (174)
                            ..-.|.++++.+|+..
T Consensus       158 aTyLq~~~q~l~eiiq~yPa~~  179 (370)
T KOG3029|consen  158 ATYLQDKRQDLGEIIQMYPATS  179 (370)
T ss_pred             HHHhccCCCCHHHHHHhccccc
Confidence                  3357888898888754

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=97.83  E-value=6.3e-05  Score=53.15  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=48.0

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG   93 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG   93 (174)
                      ++=+|.+|+++      +|++|..++.+++..     +++|..+|++..++    +.+.+| -..+|.++|||+.++
T Consensus        12 ~pv~i~~F~~~------~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~-V~~vPt~vidG~~~~   77 (89)
T cd03026          12 GPINFETYVSL------SCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERG-IMSVPAIFLNGELFG   77 (89)
T ss_pred             CCEEEEEEECC------CCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcC-CccCCEEEECCEEEE
Confidence            44469999997      699999999988763     68999999976544    344556 778999999998765

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.73  E-value=0.00018  Score=48.12  Aligned_cols=69  Identities=17%  Similarity=0.050  Sum_probs=49.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +.+|+..      .+++|.+++.+|..+|++|+.+++... ....++.++.....++|.+..+|..+.....+.+.
T Consensus         1 ~~Ly~~~------~sp~~~~v~~~l~~~gl~~~~~~~~~~-~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~y   69 (74)
T cd03058           1 VKLLGAW------ASPFVLRVRIALALKGVPYEYVEEDLG-NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEY   69 (74)
T ss_pred             CEEEECC------CCchHHHHHHHHHHcCCCCEEEEeCcc-cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHH
Confidence            3688776      689999999999999999999887543 12234555543136899998888766665555443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=97.69  E-value=0.00025  Score=47.45  Aligned_cols=69  Identities=13%  Similarity=-0.003  Sum_probs=52.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +++|+.+      .+++|.+++.+|..+|++|+.+.+...  ....+++.+... ...+|.+..+|..|.....+.+.
T Consensus         2 ~~Ly~~~------~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P-~~~vP~l~~~g~~l~es~aI~~y   72 (76)
T cd03053           2 LKLYGAA------MSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNP-FGQIPALEDGDLKLFESRAITRY   72 (76)
T ss_pred             eEEEeCC------CChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence            6788876      689999999999999999999877643  223355666665 78899998888777666555444

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.68  E-value=0.00023  Score=48.57  Aligned_cols=55  Identities=11%  Similarity=0.245  Sum_probs=41.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHH----HHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTI----RFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~v----r~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I   92 (174)
                      +|.+|+ +      .|+.|..+    +.++++++++++.++|....    +..+ +| ..++|.|+|||+.+
T Consensus         2 ~i~~~a-~------~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~----~a~~-~~-v~~vPti~i~G~~~   60 (76)
T TIGR00412         2 KIQIYG-T------GCANCQMTEKNVKKAVEELGIDAEFEKVTDMN----EILE-AG-VTATPGVAVDGELV   60 (76)
T ss_pred             EEEEEC-C------CCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH----HHHH-cC-CCcCCEEEECCEEE
Confidence            467777 5      59999999    66778899999999997322    2322 45 88999999999765

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=97.68  E-value=0.00016  Score=48.82  Aligned_cols=68  Identities=15%  Similarity=0.135  Sum_probs=52.0

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      +++|..+      .++.|.+++.+|+.+|++|+.+.+...  .....++.++.. ..++|.+..+|..+.....+.+
T Consensus         1 ~~ly~~~------~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP-~g~vP~L~~~g~~l~Es~aI~~   70 (73)
T cd03052           1 LVLYHWT------QSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNP-TGEVPVLIHGDNIICDPTQIID   70 (73)
T ss_pred             CEEecCC------CCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCc-CCCCCEEEECCEEEEcHHHHHH
Confidence            4688876      689999999999999999988877543  223456777766 7899999988887766555543

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>PHA02125 thioredoxin-like protein

Probab=97.67  E-value=0.00023  Score=48.20  Aligned_cols=55  Identities=15%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI   92 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I   92 (174)
                      |++|+++      .|+.|+.++.+|++..+.|..+|...+.    ++.+..+ ...+|++. +|+.+
T Consensus         2 iv~f~a~------wC~~Ck~~~~~l~~~~~~~~~vd~~~~~----~l~~~~~-v~~~PT~~-~g~~~   56 (75)
T PHA02125          2 IYLFGAE------WCANCKMVKPMLANVEYTYVDVDTDEGV----ELTAKHH-IRSLPTLV-NTSTL   56 (75)
T ss_pred             EEEEECC------CCHhHHHHHHHHHHHhheEEeeeCCCCH----HHHHHcC-CceeCeEE-CCEEE
Confidence            7888888      4999999999998755445445544433    4556666 78999976 67644

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.63  E-value=0.00028  Score=48.04  Aligned_cols=47  Identities=19%  Similarity=0.321  Sum_probs=35.2

Q ss_pred             CChhHHHHHHHH----HhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEE
Q 047313           39 TFEDCRTIRFLL----QSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRY   91 (174)
Q Consensus        39 ~c~~C~~vr~iL----~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~   91 (174)
                      +|++|..+.+++    ..+++.++.+|+.. .   +++ ..+| -.++|.++|||+.
T Consensus         9 ~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~-~---~~~-~~yg-v~~vPalvIng~~   59 (76)
T PF13192_consen    9 GCPYCPELVQLLKEAAEELGIEVEIIDIED-F---EEI-EKYG-VMSVPALVINGKV   59 (76)
T ss_dssp             SCTTHHHHHHHHHHHHHHTTEEEEEEETTT-H---HHH-HHTT--SSSSEEEETTEE
T ss_pred             CCCCcHHHHHHHHHHHHhcCCeEEEEEccC-H---HHH-HHcC-CCCCCEEEECCEE
Confidence            699999777755    56889999999833 2   234 4556 8899999999984

...

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.59  E-value=0.00055  Score=45.94  Aligned_cols=68  Identities=13%  Similarity=0.116  Sum_probs=51.5

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +++|...      .++.+.+++.+|...|++|+.+.+..+ ....++..... ..++|.+..+|..|.....+.+.
T Consensus         2 ~~Ly~~~------~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~~y   69 (73)
T cd03076           2 YTLTYFP------VRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKML-FGQLPCFKDGDLTLVQSNAILRH   69 (73)
T ss_pred             cEEEEeC------CcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence            5788775      479999999999999999999988652 33445555543 67899999998877766655444

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=0.00025  Score=48.99  Aligned_cols=65  Identities=17%  Similarity=0.305  Sum_probs=46.9

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc-----------CCCCCCcEEEEC-CEEEec
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-----------SGRVIPPRLFIK-GRYIGG   94 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~-----------g~~~~~P~vFI~-G~~IGG   94 (174)
                      ++|.+.      .||+|..+.+.|++.+|.|+++||..+-...+++..+-           .+...+|.+.++ |+.|=|
T Consensus         5 ~lfgsn------~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~   78 (85)
T COG4545           5 KLFGSN------LCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG   78 (85)
T ss_pred             eeeccc------cCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe
Confidence            788887      69999999999999999999999976644333333221           236788999874 454433


Q ss_pred             cchh
Q 047313           95 ADEV   98 (174)
Q Consensus        95 ~del   98 (174)
                       +++
T Consensus        79 -~Dl   81 (85)
T COG4545          79 -DDL   81 (85)
T ss_pred             -chh
Confidence             444

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=97.54  E-value=0.00011  Score=54.75  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=38.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      .|+||+.+      .|.-|++|+++|+++||+|+++|+..++--+++|.+..
T Consensus         2 ~itiy~~p------~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l   47 (117)
T COG1393           2 MITIYGNP------NCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL   47 (117)
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence            48999997      89999999999999999999999987755556655543

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=97.52  E-value=0.00095  Score=47.62  Aligned_cols=77  Identities=14%  Similarity=0.199  Sum_probs=55.6

Q ss_pred             cEEEEEeecCCC--CCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGI--RKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~i--r~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .+.+|.+.-++.  ...|++|++++.+|..+||+|+.++|.+... -+.+.++.- ...+|.+..+|..|.....+.+..
T Consensus         5 ~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~-p~~~~~~nP-~g~vPvL~~~~~~i~eS~~I~eYL   82 (91)
T cd03061           5 EIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRK-PEDLKDLAP-GTQPPFLLYNGEVKTDNNKIEEFL   82 (91)
T ss_pred             cEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCC-CHHHHHhCC-CCCCCEEEECCEEecCHHHHHHHH
Confidence            466666654331  3579999999999999999998888864421 144666654 678999998998887777665554


Q ss_pred             h
Q 047313          103 E  103 (174)
Q Consensus       103 e  103 (174)
                      +
T Consensus        83 d   83 (91)
T cd03061          83 E   83 (91)
T ss_pred             H
Confidence            3

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.52  E-value=0.00035  Score=46.07  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=48.8

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      ++|+..      .++.|.+++.+|..+|++|+.+.+...  .....++.+... ...+|.+..+|..+.....+.
T Consensus         2 ~L~~~~------~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~l~es~aI~   69 (73)
T cd03042           2 ILYSYF------RSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNP-QGLVPTLVIDGLVLTQSLAII   69 (73)
T ss_pred             EEecCC------CCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCC-CCCCCEEEECCEEEEcHHHHH
Confidence            577665      568899999999999999998877543  223456666665 789999998887775554443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=97.49  E-value=0.00063  Score=45.16  Aligned_cols=67  Identities=16%  Similarity=0.129  Sum_probs=48.3

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      +||...      .++.|.+++.+|+.+|++|+.+.+........++..... ..++|.+..+|..|.....+.+
T Consensus         2 ~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p-~~~vP~L~~~~~~l~es~aI~~   68 (72)
T cd03039           2 KLTYFN------IRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLP-FGQLPVLEIDGKKLTQSNAILR   68 (72)
T ss_pred             EEEEEc------CcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCc-CCCCCEEEECCEEEEecHHHHH
Confidence            577765      568999999999999999999988643322233444433 7799999988877665554433

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=97.44  E-value=0.00019  Score=52.97  Aligned_cols=46  Identities=15%  Similarity=0.080  Sum_probs=38.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      |+||+.+      +|+-|++|+++|++++++|+++|+..++-..++|.++..
T Consensus         1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~   46 (114)
T TIGR00014         1 VTIYHNP------RCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA   46 (114)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence            5799987      899999999999999999999999877665666665553

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=97.43  E-value=0.0002  Score=52.65  Aligned_cols=44  Identities=14%  Similarity=0.041  Sum_probs=36.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS   75 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~   75 (174)
                      |+||+.+      +|.-|++|+++|++++++|+++|+..++-..+++.++
T Consensus         1 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~   44 (112)
T cd03034           1 ITIYHNP------RCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELREL   44 (112)
T ss_pred             CEEEECC------CCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHH
Confidence            5799987      8999999999999999999999997665444444443

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=97.43  E-value=0.00069  Score=46.02  Aligned_cols=67  Identities=10%  Similarity=0.127  Sum_probs=49.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEEC---CEEEeccchhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIK---GRYIGGADEVVG  100 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~---G~~IGG~del~~  100 (174)
                      ++||+.+      . ++|.+++.+|+.+|++|+.+.+..  ......++.+... ..++|.+..+   |..|.....+.+
T Consensus         2 ~~Ly~~~------~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~~~~g~~l~eS~aI~~   73 (81)
T cd03048           2 ITLYTHG------T-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINP-NGRIPAIVDHNGTPLTVFESGAILL   73 (81)
T ss_pred             eEEEeCC------C-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCc-CCCCCEEEeCCCCceEEEcHHHHHH
Confidence            6789875      4 999999999999999998777653  2334466777665 7789999887   666655444433

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.41  E-value=0.00056  Score=45.50  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=47.3

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHh--CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQS--FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVV   99 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~--~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~   99 (174)
                      ++|+..      .+++|.+++.+|..  ++++|+.+.+... ....++.+... ..++|.+.. +|..+.....+.
T Consensus         2 ~Ly~~~------~s~~~~~~~~~l~~~~~~i~~~~~~~~~~-~~~~~~~~~~p-~~~vP~l~~~~g~~l~es~aI~   69 (73)
T cd03049           2 KLLYSP------TSPYVRKVRVAAHETGLGDDVELVLVNPW-SDDESLLAVNP-LGKIPALVLDDGEALFDSRVIC   69 (73)
T ss_pred             EEecCC------CCcHHHHHHHHHHHhCCCCCcEEEEcCcc-cCChHHHHhCC-CCCCCEEEECCCCEEECHHHHH
Confidence            578776      68999999999999  8999999988542 22345556554 788999985 666665544443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>PRK10853 putative reductase; Provisional

Probab=97.39  E-value=0.00022  Score=53.10  Aligned_cols=46  Identities=13%  Similarity=0.133  Sum_probs=39.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      |+||+.+      .|.-|++|+++|+++|++|+++|+..++--.++|.+.+.
T Consensus         2 i~iy~~~------~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~   47 (118)
T PRK10853          2 VTLYGIK------NCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID   47 (118)
T ss_pred             EEEEcCC------CCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence            7899987      899999999999999999999999877665666666553

>PRK10026 arsenate reductase; Provisional

Probab=97.37  E-value=0.00026  Score=54.43  Aligned_cols=46  Identities=13%  Similarity=0.059  Sum_probs=38.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      .|+||+.+      .|.-|++|+++|++++++|+++|+..++-..++|..++
T Consensus         3 ~i~iY~~p------~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l   48 (141)
T PRK10026          3 NITIYHNP------ACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI   48 (141)
T ss_pred             EEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence            58999997      89999999999999999999999977755555555443

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=97.34  E-value=0.0003  Score=53.00  Aligned_cols=44  Identities=16%  Similarity=0.157  Sum_probs=35.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS   74 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~   74 (174)
                      .|+||+.+      .|.-|++|+++|+++||+|+++|+..++--+++|..
T Consensus         2 ~i~iY~~p------~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~   45 (126)
T TIGR01616         2 TIIFYEKP------GCANNARQKAALKASGHDVEVQDILKEPWHADTLRP   45 (126)
T ss_pred             eEEEEeCC------CCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHH
Confidence            47899987      899999999999999999999999765444444433

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=97.32  E-value=0.00018  Score=53.24  Aligned_cols=54  Identities=22%  Similarity=0.546  Sum_probs=42.7

Q ss_pred             CCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccccCCCCC
Q 047313          119 SDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVKCPFCS  174 (174)
Q Consensus       119 ~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~C~~C~  174 (174)
                      ....|..|.|.+..+|..|+|+..+......  ......+|+.|+-.|.+.|+.|.
T Consensus        40 ~~v~C~~C~GsG~~~C~~C~G~G~v~~~~~g--~~q~~~~C~~C~G~Gk~~C~~C~   93 (111)
T PLN03165         40 NTQPCFPCSGTGAQVCRFCVGSGNVTVELGG--GEKEVSKCINCDGAGSLTCTTCQ   93 (111)
T ss_pred             cCCCCCCCCCCCCcCCCCCcCcCeEEEEeCC--cEEEEEECCCCCCcceeeCCCCC
Confidence            4567999999999999999999777643321  11236899999999999999983

>PRK10387 glutaredoxin 2; Provisional

Probab=97.31  E-value=0.00095  Score=52.80  Aligned_cols=70  Identities=13%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE-EECCEEEeccchhhhhhhc
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL-FIKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v-FI~G~~IGG~del~~l~e~  104 (174)
                      ++||+.+      .||+|.+++.+|+.+||+|+.+++...... .. .+..+ ..++|+| ..+|..|.....+.+..++
T Consensus         1 ~~Ly~~~------~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p-~~~VPvL~~~~g~~l~eS~aI~~yL~~   71 (210)
T PRK10387          1 MKLYIYD------HCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIG-QKQVPILQKDDGSYMPESLDIVHYIDE   71 (210)
T ss_pred             CEEEeCC------CCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcC-CcccceEEecCCeEecCHHHHHHHHHH
Confidence            4688876      689999999999999999999998654322 22 33444 6799999 5688888877776665543

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=97.29  E-value=0.00084  Score=53.88  Aligned_cols=68  Identities=13%  Similarity=0.140  Sum_probs=51.6

Q ss_pred             EEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhhhhc
Q 047313           28 FYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        28 lYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l~e~  104 (174)
                      +|+..      .||+|.+|+.+|..+|++|+.+++..+.. .. ..+... ..++|++. .+|..|.+...+.+..++
T Consensus         2 Ly~~~------~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~np-~g~vP~l~~~~g~~l~es~~I~~yL~~   70 (209)
T TIGR02182         2 LYIYD------HCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMIG-AKQVPILQKDDGRAMPESLDIVAYFDK   70 (209)
T ss_pred             eecCC------CCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhcC-CCCcceEEeeCCeEeccHHHHHHHHHH
Confidence            67765      68999999999999999999998855432 12 234443 67899997 788888888777665443

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=97.20  E-value=0.0031  Score=42.38  Aligned_cols=68  Identities=12%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             EEEEEeec-CCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           26 VIFYTTSL-RGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl-~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ++||.... .+.+..+++|.+++.+|+..|++|+.+.+..        ..... ..++|.+..+|+.|.+...+.+..
T Consensus         2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p-~g~vPvl~~~g~~l~eS~~I~~yL   70 (75)
T cd03080           2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSP-KGKLPFIELNGEKIADSELIIDHL   70 (75)
T ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCC-CCCCCEEEECCEEEcCHHHHHHHH
Confidence            46676542 1233457999999999999999999988853        13333 678999999999887777665543

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.10  E-value=0.0011  Score=48.54  Aligned_cols=56  Identities=13%  Similarity=0.194  Sum_probs=41.5

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      ....|+||.+.     +.|++|..++.+|+..     .+.|..+|+..++    ++.+.++ ..++|.++|
T Consensus        21 ~~~~vvv~f~a-----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~-v~~vPt~~i   81 (113)
T cd02975          21 NPVDLVVFSSK-----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYG-VERVPTTIF   81 (113)
T ss_pred             CCeEEEEEeCC-----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcC-CCcCCEEEE
Confidence            34457777542     2599999999999764     3678999997665    4555666 889999988

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.05  E-value=0.003  Score=38.17  Aligned_cols=56  Identities=21%  Similarity=0.287  Sum_probs=42.7

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQ-----SFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG   89 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~-----~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G   89 (174)
                      +++|..+      .|++|.+++..|+     ..++.+..+|+.......+.. ...+ ...+|.+++.+
T Consensus         1 l~~~~~~------~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~P~~~~~~   61 (69)
T cd01659           1 LVLFYAP------WCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKEL-KRYG-VGGVPTLVVFG   61 (69)
T ss_pred             CEEEECC------CChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHH-HhCC-CccccEEEEEe
Confidence            3566665      6999999999999     678999999998877655542 2334 67899998765

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=97.00  E-value=0.0038  Score=41.75  Aligned_cols=66  Identities=14%  Similarity=0.127  Sum_probs=48.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      +++|..+      ..+.|.+++.+|...|++|+.+.+...  +....++.++.. ..++|.+..+|..|.....+
T Consensus         1 ~~ly~~~------~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p-~~~vP~L~~~~~~l~eS~aI   68 (76)
T cd03050           1 LKLYYDL------MSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINP-FGKVPAIVDGDFTLAESVAI   68 (76)
T ss_pred             CEEeeCC------CChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCc-CCCCCEEEECCEEEEcHHHH
Confidence            3678876      579999999999999999998877532  222345666655 78999998887665544444

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=96.95  E-value=0.0095  Score=41.76  Aligned_cols=59  Identities=22%  Similarity=0.340  Sum_probs=41.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG   94 (174)
                      -+++|+++      .|+.|..+...|+.      .++.+..+|+..++++    .+..+ ...+|.+++  +|+.++-
T Consensus        16 vlv~f~a~------~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~~-v~~vPt~~i~~~g~~v~~   82 (97)
T cd02949          16 ILVLYTSP------TCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAAG-IMGTPTVQFFKDKELVKE   82 (97)
T ss_pred             EEEEEECC------CChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHCC-CeeccEEEEEECCeEEEE
Confidence            34455555      69999999998876      4578899999877654    34445 678998854  7766543

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=96.94  E-value=0.004  Score=41.80  Aligned_cols=65  Identities=17%  Similarity=0.057  Sum_probs=48.9

Q ss_pred             CCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           34 RGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM-EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        34 ~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~-~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      .+.+..++++.+++.+|+.+|++|+.+.+.... +...++.+... ...+|.+..+|..|.....+.
T Consensus         4 ~~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~   69 (73)
T cd03043           4 IGNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSP-TGKVPVLVDGGIVVWDSLAIC   69 (73)
T ss_pred             EcCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCC-CCcCCEEEECCEEEEcHHHHH
Confidence            455678999999999999999999988875432 23356666655 789999999987766554443

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=96.92  E-value=0.0075  Score=40.04  Aligned_cols=59  Identities=22%  Similarity=0.328  Sum_probs=43.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG   94 (174)
                      -+++|+++      .|+.|..+...|+.     .++.|..+|+..+..+...    .+ ...+|++++  +|+.++-
T Consensus        13 ~ll~~~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~-v~~~P~~~~~~~g~~~~~   78 (93)
T cd02947          13 VVVDFWAP------WCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEE----YG-VRSIPTFLFFKNGKEVDR   78 (93)
T ss_pred             EEEEEECC------CChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHh----cC-cccccEEEEEECCEEEEE
Confidence            35555554      69999999999988     7888999999876665443    34 678999876  7774433

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=96.91  E-value=0.0024  Score=43.73  Aligned_cols=74  Identities=16%  Similarity=0.150  Sum_probs=50.4

Q ss_pred             EEEEee-cCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchhhhhh
Q 047313           27 IFYTTS-LRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEVVGLH  102 (174)
Q Consensus        27 vlYtts-l~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del~~l~  102 (174)
                      ++|+.+ ..+.+..+++|.+++.+|..++++|+.+.+...  .....++ +... ...+|.|..+ |..|.+...+.+..
T Consensus         2 ~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p-~~~vP~L~~~~~~~l~eS~aI~~yL   79 (84)
T cd03038           2 TLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGG-FYTVPVIVDGSGEVIGDSFAIAEYL   79 (84)
T ss_pred             eeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCC-CceeCeEEECCCCEEeCHHHHHHHH
Confidence            455443 223456789999999999999999998877543  2223334 3333 6789999888 77777666665543

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=96.90  E-value=0.0035  Score=42.02  Aligned_cols=64  Identities=11%  Similarity=-0.059  Sum_probs=47.0

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHhcCCCCCCcEEEEC-CEEEeccch
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM-EFRDELWSSLSGRVIPPRLFIK-GRYIGGADE   97 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~-~~~~el~~~~g~~~~~P~vFI~-G~~IGG~de   97 (174)
                      ++|+..      .++.+.+++.+|..+|++|+.++|.... ....++.++.- ..++|.+..+ |..|.....
T Consensus         2 ~Ly~~~------~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP-~~~vP~L~~~~g~~l~es~a   67 (75)
T cd03044           2 TLYTYP------GNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFP-LGKVPAFEGADGFCLFESNA   67 (75)
T ss_pred             eEecCC------CCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCC-CCCCCEEEcCCCCEEeeHHH
Confidence            467765      6899999999999999999999886542 22345666654 7899999885 655544333

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=96.83  E-value=0.0047  Score=40.96  Aligned_cols=67  Identities=10%  Similarity=0.017  Sum_probs=48.2

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++|+..      . +.+.+++.+|...|++|+.+.+...  .....++.+... ...+|.+..+|..|.....+.+.
T Consensus         2 ~l~~~~------~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p-~~~vP~l~~~g~~l~es~aI~~y   70 (76)
T cd03046           2 TLYHLP------R-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINP-LGKVPVLVDGDLVLTESAAIILY   70 (76)
T ss_pred             EEEeCC------C-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence            577654      2 5688999999999999998877542  223455666654 78999999888877666555444

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=96.80  E-value=0.005  Score=49.20  Aligned_cols=69  Identities=12%  Similarity=0.083  Sum_probs=53.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      ..++||+..      .|++|.+++.+|..+|++|+.+.|... ....++.++.- ..++|.+..+|..|--...+.+
T Consensus         9 ~~~~Ly~~~------~s~~~~rv~~~L~e~gl~~e~~~v~~~-~~~~~~~~~nP-~g~VPvL~~~g~~l~ES~AIl~   77 (211)
T PRK09481          9 SVMTLFSGP------TDIYSHQVRIVLAEKGVSVEIEQVEKD-NLPQDLIDLNP-YQSVPTLVDRELTLYESRIIME   77 (211)
T ss_pred             CeeEEeCCC------CChhHHHHHHHHHHCCCCCEEEeCCcc-cCCHHHHHhCC-CCCCCEEEECCEEeeCHHHHHH
Confidence            358899976      689999999999999999999988643 22346666654 6799999998877655555543

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=96.73  E-value=0.0034  Score=45.66  Aligned_cols=38  Identities=21%  Similarity=0.173  Sum_probs=27.7

Q ss_pred             CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           39 TFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      .|.-|++|+++|+++|+.|+++|+..++--+++|.++.
T Consensus         5 ~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l   42 (110)
T PF03960_consen    5 NCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL   42 (110)
T ss_dssp             T-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence            89999999999999999999999988766666665543

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=96.65  E-value=0.01  Score=39.45  Aligned_cols=65  Identities=9%  Similarity=0.032  Sum_probs=47.8

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      .+|...      ..+.+.+++.+|..+|++|+.+++...  .....++.+... ..++|.+..+|..|.....+
T Consensus         2 ~l~~~~------~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP-~~~vP~L~~~~~~l~eS~aI   68 (73)
T cd03047           2 TIWGRR------SSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNP-NGRVPVLEDGDFVLWESNAI   68 (73)
T ss_pred             EEEecC------CCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCC-CCCCCEEEECCEEEECHHHH
Confidence            578765      468999999999999999998887532  233456666655 77999998888766544433

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=96.61  E-value=0.0025  Score=42.50  Aligned_cols=63  Identities=16%  Similarity=0.085  Sum_probs=46.4

Q ss_pred             ChhHHHHHHHHHhCCCcEEEEECC---CCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhhhh
Q 047313           40 FEDCRTIRFLLQSFKVTFYERDVS---LHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGLHE  103 (174)
Q Consensus        40 c~~C~~vr~iL~~~~v~~~e~Dv~---~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l~e  103 (174)
                      ||++.+++-+|+.+|++|+..-+.   .......++.++.+ ..++|.|.. +|..|.....+.+..+
T Consensus         2 sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p-~~~VP~L~~~~g~vi~eS~~I~~yL~   68 (70)
T PF13409_consen    2 SPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNP-RGKVPVLVDPDGTVINESLAILEYLE   68 (70)
T ss_dssp             -HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHST-T-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred             chHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCc-CeEEEEEEECCCCEeeCHHHHHHHHh
Confidence            899999999999999998876552   12222356777777 889999998 8898887777665543

...

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.60  E-value=0.008  Score=40.20  Aligned_cols=64  Identities=13%  Similarity=0.157  Sum_probs=44.9

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEEC-CEEEeccchh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIK-GRYIGGADEV   98 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del   98 (174)
                      .||+.+      .+ .+.+++.+|..+|++|+.+++....  ....++.+... ...+|.+..+ |..+.....+
T Consensus         2 ~Ly~~~------~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np-~~~vP~l~~~~g~~l~eS~aI   68 (77)
T cd03057           2 KLYYSP------GA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINP-KGQVPALVLDDGEVLTESAAI   68 (77)
T ss_pred             EEEeCC------CC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCC-CCCCCEEEECCCcEEEcHHHH
Confidence            578765      23 4788999999999999887775432  23456777665 7899999887 6555444433

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=96.60  E-value=0.011  Score=41.80  Aligned_cols=56  Identities=14%  Similarity=0.172  Sum_probs=39.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHH------Hh---CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLL------QS---FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL------~~---~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      -+|.|+++      .|++|..+...+      ..   .++.+..+|+..+.....++.+.++ ..++|.+++
T Consensus        14 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~-i~~~Pti~~   78 (104)
T cd02953          14 VFVDFTAD------WCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG-VFGPPTYLF   78 (104)
T ss_pred             EEEEEEcc------hhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC-CCCCCEEEE
Confidence            35556665      599999887543      11   1677888898776555567777777 889998854

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=96.51  E-value=0.015  Score=48.24  Aligned_cols=76  Identities=13%  Similarity=0.116  Sum_probs=55.8

Q ss_pred             EEEEEeecCC--CCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           26 VIFYTTSLRG--IRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        26 VvlYttsl~~--ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      |.+|.+.-..  ....||+|++++.+|..+|++|+.+.|..... .+++.++.- ..++|++..+|..|.....+.+..+
T Consensus         3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP-~g~vPvL~~~g~~l~ES~aI~eYL~   80 (236)
T TIGR00862         3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAP-GTHPPFLTYNTEVKTDVNKIEEFLE   80 (236)
T ss_pred             eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCc-CCCCCEEEECCEEeecHHHHHHHHH
Confidence            5566665222  12579999999999999999998888865422 356666655 6789999888888877777666554

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.43  E-value=0.015  Score=46.95  Aligned_cols=55  Identities=13%  Similarity=0.194  Sum_probs=41.9

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG   89 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G   89 (174)
                      -.|++|+++      .|++|..++.+|+.+     .|.+..+|+..+++..    +.++ ..++|+++|++
T Consensus       135 v~I~~F~a~------~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~----~~~~-V~~vPtl~i~~  194 (215)
T TIGR02187       135 VRIEVFVTP------TCPYCPYAVLMAHKFALANDKILGEMIEANENPDLA----EKYG-VMSVPKIVINK  194 (215)
T ss_pred             cEEEEEECC------CCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHH----HHhC-CccCCEEEEec
Confidence            367778887      599999999999864     4677788887766543    3455 78899999865

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>PHA02278 thioredoxin-like protein

Probab=96.39  E-value=0.024  Score=40.99  Aligned_cols=75  Identities=15%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             HhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcE
Q 047313           11 LKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPR   84 (174)
Q Consensus        11 ~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~   84 (174)
                      +.+|.+.-  ...+.|+||...     +.|+.|+.+..+|+..      .+.+..+||..++.-..++.+..+ -.++|+
T Consensus         4 ~~~~~~~i--~~~~~vvV~F~A-----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~-I~~iPT   75 (103)
T PHA02278          4 LVDLNTAI--RQKKDVIVMITQ-----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD-IMSTPV   75 (103)
T ss_pred             HHHHHHHH--hCCCcEEEEEEC-----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC-CccccE
Confidence            55666665  244555555544     3599999988877552      356888999765322334666666 788898


Q ss_pred             E--EECCEEEe
Q 047313           85 L--FIKGRYIG   93 (174)
Q Consensus        85 v--FI~G~~IG   93 (174)
                      +  |-||+.++
T Consensus        76 ~i~fk~G~~v~   86 (103)
T PHA02278         76 LIGYKDGQLVK   86 (103)
T ss_pred             EEEEECCEEEE
Confidence            7  44887653

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=96.38  E-value=0.022  Score=42.30  Aligned_cols=58  Identities=19%  Similarity=0.175  Sum_probs=37.6

Q ss_pred             CCChhHHHHHHHHH----hCCCcEEEEECCCCH-------HHHHHHHHhcC---CCCCCcEEE--ECCEEEecc
Q 047313           38 KTFEDCRTIRFLLQ----SFKVTFYERDVSLHM-------EFRDELWSSLS---GRVIPPRLF--IKGRYIGGA   95 (174)
Q Consensus        38 ~~c~~C~~vr~iL~----~~~v~~~e~Dv~~~~-------~~~~el~~~~g---~~~~~P~vF--I~G~~IGG~   95 (174)
                      ++||+|+.+.-.|+    ..++++..+|+..+.       ....++.+..+   +-..+|.++  -+|+.++..
T Consensus        33 ~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~v~~~  106 (122)
T TIGR01295        33 KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQVSVR  106 (122)
T ss_pred             CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeEEEEE
Confidence            37999999766664    456889999997543       12234444433   134589884  589877654

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.19  E-value=0.019  Score=52.25  Aligned_cols=63  Identities=17%  Similarity=0.237  Sum_probs=46.8

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEec
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGG   94 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG   94 (174)
                      .++-.|.+|.|+      +||+|-.|+.+++..     .|..+.+|....++.    .+.++ ...+|.+||||+.++.
T Consensus       116 ~~~~~i~~f~~~------~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~----~~~~~-v~~VP~~~i~~~~~~~  183 (515)
T TIGR03140       116 NGPLHFETYVSL------TCQNCPDVVQALNQMALLNPNISHTMIDGALFQDE----VEALG-IQGVPAVFLNGEEFHN  183 (515)
T ss_pred             CCCeEEEEEEeC------CCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHH----HHhcC-CcccCEEEECCcEEEe
Confidence            345579999997      899999999988764     556777777555543    34445 6799999999986643

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.14  E-value=0.018  Score=52.34  Aligned_cols=61  Identities=18%  Similarity=0.291  Sum_probs=46.7

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG   93 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG   93 (174)
                      ++-.|.+|.|+      +||+|..++.+++..     .|..+.+|....++..    +.++ ...+|.+||||+.+.
T Consensus       116 ~~~~i~~fv~~------~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~----~~~~-v~~VP~~~i~~~~~~  181 (517)
T PRK15317        116 GDFHFETYVSL------SCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEV----EARN-IMAVPTVFLNGEEFG  181 (517)
T ss_pred             CCeEEEEEEcC------CCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHH----HhcC-CcccCEEEECCcEEE
Confidence            45579999997      899999999988763     5667888876655543    3445 679999999997654

>PRK09381 trxA thioredoxin; Provisional

Probab=96.13  E-value=0.08  Score=37.51  Aligned_cols=87  Identities=14%  Similarity=0.245  Sum_probs=51.4

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|++.--..+..-++.|+++      .|+.|..+...|+.    +  ++.+..+|+..++..    .+.++ ..++|.++
T Consensus        12 ~~~~~v~~~~~~vvv~f~~~------~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~   80 (109)
T PRK09381         12 SFDTDVLKADGAILVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYG-IRGIPTLL   80 (109)
T ss_pred             hHHHHHhcCCCeEEEEEECC------CCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCC-CCcCCEEE
Confidence            45443222233344555555      59999999877754    2  366788888776654    33445 78899885


Q ss_pred             E--CCEEEeccchhhhhhhcCchhHHhhc
Q 047313           87 I--KGRYIGGADEVVGLHEQGKLKKLLEG  113 (174)
Q Consensus        87 I--~G~~IGG~del~~l~e~G~L~~~L~~  113 (174)
                      +  +|+.++-+....   ...+|..+|+.
T Consensus        81 ~~~~G~~~~~~~G~~---~~~~l~~~i~~  106 (109)
T PRK09381         81 LFKNGEVAATKVGAL---SKGQLKEFLDA  106 (109)
T ss_pred             EEeCCeEEEEecCCC---CHHHHHHHHHH
Confidence            5  888775443221   12345555543

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=96.06  E-value=0.063  Score=36.92  Aligned_cols=61  Identities=18%  Similarity=0.363  Sum_probs=42.9

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEe
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIG   93 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IG   93 (174)
                      ...++||..+     +.|+.|..++..|..    +  +|.|-.+|+..++.    +.+..+ ...+|.++  -+|+.+.
T Consensus        17 ~~~vvv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~g~~~~   85 (103)
T PF00085_consen   17 DKPVVVYFYA-----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE----LCKKYG-VKSVPTIIFFKNGKEVK   85 (103)
T ss_dssp             SSEEEEEEES-----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH----HHHHTT-CSSSSEEEEEETTEEEE
T ss_pred             CCCEEEEEeC-----CCCCccccccceecccccccccccccchhhhhccch----hhhccC-CCCCCEEEEEECCcEEE
Confidence            3555555554     369999999988854    3  58899999987644    444555 78899984  4777665

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.037  Score=45.89  Aligned_cols=72  Identities=14%  Similarity=0.021  Sum_probs=53.1

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++.|.||++-      .||+-++++-.|+.+||+|+.+++.... --+.|.+..--...+|+|..||+.|.-.-.+.+.
T Consensus         7 ~~~vrL~~~w------~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveY   78 (231)
T KOG0406|consen    7 DGTVKLLGMW------FSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEY   78 (231)
T ss_pred             CCeEEEEEee------cChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHH
Confidence            4789999986      7999999999999999999888875432 1123444442367899999999987644444333

>PRK15113 glutathione S-transferase; Provisional

Probab=95.97  E-value=0.039  Score=44.11  Aligned_cols=72  Identities=11%  Similarity=0.028  Sum_probs=52.3

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      ..++||+.+.    ..+++|.+++.+|..+||+|+.+.+..  .+....++.++.- ...||++.++|..|-....+.+
T Consensus         4 ~~~~Ly~~~~----~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~VP~L~~~~~~l~ES~aI~~   77 (214)
T PRK15113          4 PAITLYSDAH----FFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSL-TRRVPTLQHDDFELSESSAIAE   77 (214)
T ss_pred             CeEEEEeCCC----CCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCC-CCCCCEEEECCEEEecHHHHHH
Confidence            3478999642    147999999999999999998887753  2233456776654 7799999999876655444433

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=95.90  E-value=0.067  Score=36.31  Aligned_cols=65  Identities=20%  Similarity=0.180  Sum_probs=43.9

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--hcCCCCCCcEEEECCEEEeccchh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS--SLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~--~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      .++|..+      ..+.+.+++.+|+..|++|+.+.+...+++.+ +..  ..- ..++|.|.+||..|...-.+
T Consensus         2 ~~Ly~~~------~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~-~g~vP~L~~~g~~l~ES~AI   68 (79)
T cd03077           2 PVLHYFN------GRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLM-FQQVPMVEIDGMKLVQTRAI   68 (79)
T ss_pred             CEEEEeC------CCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCC-CCCCCEEEECCEEEeeHHHH
Confidence            5688876      34688999999999999999887754333211 111  111 45899999888766544443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.86  E-value=0.028  Score=51.66  Aligned_cols=59  Identities=14%  Similarity=0.087  Sum_probs=45.9

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEE
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRY   91 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~   91 (174)
                      ++-+|.+|.++      +||+|-.+.+.++.    . +|..+.+|+...++    +.+.++ ..++|.++|||+.
T Consensus       476 ~~~~i~v~~~~------~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~~-v~~vP~~~i~~~~  539 (555)
T TIGR03143       476 KPVNIKIGVSL------SCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEYG-IMSVPAIVVDDQQ  539 (555)
T ss_pred             CCeEEEEEECC------CCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhCC-ceecCEEEECCEE
Confidence            44568898887      89999988876654    4 79999999977654    444455 7889999999964

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=95.77  E-value=0.078  Score=38.25  Aligned_cols=57  Identities=19%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             CChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccchhhhh
Q 047313           39 TFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGADEVVGL  101 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~del~~l  101 (174)
                      .|+.|..+...|+.     .++.|..+|+..+     ++.+..+ -..+|.+  |-+|+.++.......+
T Consensus        35 ~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~-i~~~Pt~~~f~~G~~v~~~~G~~~~   98 (113)
T cd02957          35 GFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLD-IKVLPTLLVYKNGELIDNIVGFEEL   98 (113)
T ss_pred             CCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcC-CCcCCEEEEEECCEEEEEEecHHHh
Confidence            59999999888865     2577888888543     5566666 7789987  5699887666554444

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=95.74  E-value=0.13  Score=37.45  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=45.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD   96 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d   96 (174)
                      +.|+||..+     +.|+.|+.+...|+.     .++.|..+|+...++    +.+..+ ...+|.+  |-+|+.++-..
T Consensus        23 ~~vvV~f~a-----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~-v~~vPt~l~fk~G~~v~~~~   92 (113)
T cd02989          23 ERVVCHFYH-----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLN-IKVLPTVILFKNGKTVDRIV   92 (113)
T ss_pred             CcEEEEEEC-----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCC-CccCCEEEEEECCEEEEEEE
Confidence            456555554     369999999888865     357899999987665    444445 7788887  55998765443


Q ss_pred             hh
Q 047313           97 EV   98 (174)
Q Consensus        97 el   98 (174)
                      .+
T Consensus        93 g~   94 (113)
T cd02989          93 GF   94 (113)
T ss_pred             Cc
Confidence            33

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=95.66  E-value=0.012  Score=39.31  Aligned_cols=44  Identities=27%  Similarity=0.672  Sum_probs=26.6

Q ss_pred             ceEeCCCCCCCeeeeecCCC-CCCccccccCcccccCcccc----CCCC
Q 047313          130 RFVLCSNCSGSCKVFRDGDD-DDDDELHIRCPECNENGLVK----CPFC  173 (174)
Q Consensus       130 r~v~C~~C~Gs~k~~~~~~~-~~~~~~~~rC~~CnenGl~~----C~~C  173 (174)
                      ....|+.|+|+..++..... .........|+.|+=.|.+.    |+.|
T Consensus        14 ~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C   62 (66)
T PF00684_consen   14 KPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTC   62 (66)
T ss_dssp             T-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSS
T ss_pred             CCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCC
Confidence            34889999999777754421 01123478899999998774    7777

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PLN02473 glutathione S-transferase

Probab=95.62  E-value=0.043  Score=43.51  Aligned_cols=69  Identities=10%  Similarity=-0.016  Sum_probs=50.7

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +.||+..      +.+.+.+++-+|..+|++|+.+.+...  +....++..+.- ...+|.+..+|..|.....+.+.
T Consensus         3 ~kLy~~~------~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~ES~aI~~Y   73 (214)
T PLN02473          3 VKVYGQI------KAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQP-FGQVPAIEDGDLKLFESRAIARY   73 (214)
T ss_pred             eEEecCC------CCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCC-CCCCCeEEECCEEEEehHHHHHH
Confidence            5788875      578999999999999999988765322  233445555543 67999999999888777666554

>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.61  E-value=0.037  Score=43.01  Aligned_cols=91  Identities=18%  Similarity=0.357  Sum_probs=62.4

Q ss_pred             hHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCc
Q 047313           10 FLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPP   83 (174)
Q Consensus        10 ~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P   83 (174)
                      ++..|+.+--..+..-+|-|+.+|      |..|+.+.-+|+++      .+.+-.+|+..+.++..    .++ -..+|
T Consensus        49 s~~~~~~~Vi~S~~PVlVdF~A~W------CgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~----~Y~-I~avP  117 (150)
T KOG0910|consen   49 SDSEFDDKVINSDVPVLVDFHAEW------CGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAE----DYE-ISAVP  117 (150)
T ss_pred             CHHHHHHHHHccCCCEEEEEecCc------CccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHh----hcc-eeeee
Confidence            456677776556666788899987      99999999988763      45678888877776444    445 67888


Q ss_pred             EE--EECCEEEeccchhhhhhhcCchhHHhhcC
Q 047313           84 RL--FIKGRYIGGADEVVGLHEQGKLKKLLEGI  114 (174)
Q Consensus        84 ~v--FI~G~~IGG~del~~l~e~G~L~~~L~~~  114 (174)
                      .|  |-||+-+   |.+..+.....|..+++++
T Consensus       118 tvlvfknGe~~---d~~vG~~~~~~l~~~i~k~  147 (150)
T KOG0910|consen  118 TVLVFKNGEKV---DRFVGAVPKEQLRSLIKKF  147 (150)
T ss_pred             EEEEEECCEEe---eeecccCCHHHHHHHHHHH
Confidence            87  5688765   3333334444566666543

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=95.59  E-value=0.0069  Score=53.41  Aligned_cols=54  Identities=26%  Similarity=0.589  Sum_probs=42.0

Q ss_pred             CCCCCCCCCc------ceEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNI------RFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~------r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|+      .-..|+.|||+..+....+. ........|+.||=.|-+   +|+.|.
T Consensus       142 ~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~-g~~~~~~~C~~C~G~G~~i~~pC~~C~  204 (371)
T COG0484         142 SVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRT-GFFSFQQTCPTCNGTGKIIKDPCGKCK  204 (371)
T ss_pred             eeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEee-eEEEEEEECCCCccceeECCCCCCCCC
Confidence            5579999999      78899999999877655522 112357999999999977   699883

>PTZ00051 thioredoxin; Provisional

Probab=95.54  E-value=0.094  Score=36.22  Aligned_cols=51  Identities=18%  Similarity=0.183  Sum_probs=35.8

Q ss_pred             CChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEec
Q 047313           39 TFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGG   94 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG   94 (174)
                      .|+.|+.+...|+.     .++.|..+|+.....    +.+..+ ...+|.+.  -+|+.++.
T Consensus        29 ~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~g~~~~~   86 (98)
T PTZ00051         29 WCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKEN-ITSMPTFKVFKNGSVVDT   86 (98)
T ss_pred             CCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHCC-CceeeEEEEEeCCeEEEE
Confidence            69999999888876     357888888865443    444455 67788774  47765543

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=95.41  E-value=0.03  Score=44.15  Aligned_cols=62  Identities=15%  Similarity=0.124  Sum_probs=46.4

Q ss_pred             CChhHHHHHHHHHhCCCcEEEEECCC-C--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           39 TFEDCRTIRFLLQSFKVTFYERDVSL-H--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~-~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +++.+.+++.+|..+||+|+.+.+.. .  .....++.+..- ..++|.+.++|..|-....+...
T Consensus         7 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~ES~aI~~y   71 (210)
T TIGR01262         7 RSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNP-QGLVPTLDIDGEVLTQSLAIIEY   71 (210)
T ss_pred             CCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCC-CCcCCEEEECCEEeecHHHHHHH
Confidence            57899999999999999999888763 1  122345666654 78999999999877666555443

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>TIGR01068 thioredoxin thioredoxin

Probab=95.14  E-value=0.17  Score=34.47  Aligned_cols=59  Identities=19%  Similarity=0.303  Sum_probs=40.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .|+||..+     ..|+.|..+...|+.    +  .+.|-.+|.+.++.+    .+.++ ...+|.+++  +|+.+.
T Consensus        16 ~vvi~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~P~~~~~~~g~~~~   82 (101)
T TIGR01068        16 PVLVDFWA-----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDI----AAKYG-IRSIPTLLLFKNGKEVD   82 (101)
T ss_pred             cEEEEEEC-----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHH----HHHcC-CCcCCEEEEEeCCcEee
Confidence            44544444     269999998877754    2  377889998776654    34456 788999866  776543

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=95.00  E-value=0.14  Score=35.24  Aligned_cols=57  Identities=9%  Similarity=0.193  Sum_probs=37.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~I   92 (174)
                      -++.|.++      .|+.|..+...|..    +  .+.+..+|+..+++    +.+.++ ...+|+++  -+|+.+
T Consensus        15 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~-i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          15 VVVDFWAP------RSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQFG-VQALPTVYLFAAGQPV   79 (96)
T ss_pred             EEEEEECC------CChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHcC-CCCCCEEEEEeCCEEe
Confidence            34445555      59999999877764    2  35567888876654    444455 77899986  477654

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=94.99  E-value=0.21  Score=41.09  Aligned_cols=35  Identities=14%  Similarity=0.295  Sum_probs=26.1

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC---CCcEEEE
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF---KVTFYER   60 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~---~v~~~e~   60 (174)
                      +.++..|++||-+      .||+|+++-..|..+   +|.+..+
T Consensus       105 ~~~k~~I~vFtDp------~CpyCkkl~~~l~~~~~~~v~v~~~  142 (232)
T PRK10877        105 PQEKHVITVFTDI------TCGYCHKLHEQMKDYNALGITVRYL  142 (232)
T ss_pred             CCCCEEEEEEECC------CChHHHHHHHHHHHHhcCCeEEEEE
Confidence            4455678888886      899999998888774   4665554

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=94.98  E-value=0.072  Score=44.76  Aligned_cols=62  Identities=10%  Similarity=0.128  Sum_probs=46.1

Q ss_pred             CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           39 TFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .||+|.+++.+|+.+|++|+.+.|.... ...++.++.- ...+|.+..+|..|.....+.+..
T Consensus        72 ~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP-~GkVPvL~~d~~~L~ES~aI~~YL  133 (265)
T PLN02817         72 DCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISP-EGKVPVVKLDEKWVADSDVITQAL  133 (265)
T ss_pred             CCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence            5999999999999999999987775432 1234555543 679999999998776665555443

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=94.87  E-value=0.12  Score=36.66  Aligned_cols=67  Identities=15%  Similarity=0.136  Sum_probs=37.5

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh---------CCCcEEEEECCCCHH----------------HHHHHHHhcC
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS---------FKVTFYERDVSLHME----------------FRDELWSSLS   77 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~---------~~v~~~e~Dv~~~~~----------------~~~el~~~~g   77 (174)
                      ...|++|+.+      .|++|+++...+..         .++.+..+++..+..                ...++.+.+|
T Consensus         6 k~~v~~F~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   79 (112)
T PF13098_consen    6 KPIVVVFTDP------WCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG   79 (112)
T ss_dssp             SEEEEEEE-T------T-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT
T ss_pred             CEEEEEEECC------CCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC
Confidence            3445555554      79999988666652         135566667754432                2245666667


Q ss_pred             CCCCCcEEEE-C--CE---EEeccc
Q 047313           78 GRVIPPRLFI-K--GR---YIGGAD   96 (174)
Q Consensus        78 ~~~~~P~vFI-~--G~---~IGG~d   96 (174)
                       ...+|.+++ |  |+   .+-|+-
T Consensus        80 -v~gtPt~~~~d~~G~~v~~~~G~~  103 (112)
T PF13098_consen   80 -VNGTPTIVFLDKDGKIVYRIPGYL  103 (112)
T ss_dssp             ---SSSEEEECTTTSCEEEEEESS-
T ss_pred             -CCccCEEEEEcCCCCEEEEecCCC
Confidence             888999865 4  66   344543

...

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=94.84  E-value=0.38  Score=34.07  Aligned_cols=62  Identities=15%  Similarity=0.027  Sum_probs=41.2

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IG   93 (174)
                      --||.|+.+      .|+.|+.....|+.     ..+.|..+|+..++.. .++.+..+ ...+|+++  -+|+.++
T Consensus        17 ~vvv~F~a~------wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~-V~~~Pt~~~~~~G~~v~   85 (103)
T cd02985          17 LVVLEFALK------HSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREK-IIEVPHFLFYKDGEKIH   85 (103)
T ss_pred             EEEEEEECC------CCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcC-CCcCCEEEEEeCCeEEE
Confidence            344445555      59999988888865     2577888888766432 34555556 77899764  4787553

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=94.83  E-value=0.27  Score=36.26  Aligned_cols=65  Identities=18%  Similarity=0.255  Sum_probs=45.3

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEec
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----K-VTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGG   94 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG   94 (174)
                      ...|+.|+.+|    ..||.|..+.-+|+..     + +.|-.+|+..++    ++....+ -.++|++  |-+|+.++.
T Consensus        28 ~~~v~~f~~~~----~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~-V~sIPTli~fkdGk~v~~   98 (111)
T cd02965          28 GDLVLLLAGDP----VRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFG-VLRTPALLFFRDGRYVGV   98 (111)
T ss_pred             CCEEEEecCCc----ccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcC-CCcCCEEEEEECCEEEEE
Confidence            34566666654    2599999999888652     2 457788888776    4555556 7889987  459988765


Q ss_pred             cc
Q 047313           95 AD   96 (174)
Q Consensus        95 ~d   96 (174)
                      ..
T Consensus        99 ~~  100 (111)
T cd02965          99 LA  100 (111)
T ss_pred             Ee
Confidence            53

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>PRK10996 thioredoxin 2; Provisional

Probab=94.74  E-value=0.21  Score=37.62  Aligned_cols=75  Identities=16%  Similarity=0.218  Sum_probs=45.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEeccc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGAD   96 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~d   96 (174)
                      -++.|+++      .|+.|..+...|..      .++.|..+|+..++++    .+..+ ...+|.+++  +|+.+.-+.
T Consensus        55 vvv~F~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~-V~~~Ptlii~~~G~~v~~~~  123 (139)
T PRK10996         55 VVIDFWAP------WCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAEREL----SARFR-IRSIPTIMIFKNGQVVDMLN  123 (139)
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHH----HHhcC-CCccCEEEEEECCEEEEEEc
Confidence            34555555      59999988777754      2466778888776654    44455 778898754  887653322


Q ss_pred             hhhhhhhcCchhHHhhc
Q 047313           97 EVVGLHEQGKLKKLLEG  113 (174)
Q Consensus        97 el~~l~e~G~L~~~L~~  113 (174)
                      .   ......|.++|+.
T Consensus       124 G---~~~~e~l~~~l~~  137 (139)
T PRK10996        124 G---AVPKAPFDSWLNE  137 (139)
T ss_pred             C---CCCHHHHHHHHHH
Confidence            1   1233456666653

>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function

Probab=94.69  E-value=0.48  Score=35.51  Aligned_cols=84  Identities=25%  Similarity=0.466  Sum_probs=50.9

Q ss_pred             ecCCCCCCChhHHH-----------HHHHHHhCCCc--EEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           32 SLRGIRKTFEDCRT-----------IRFLLQSFKVT--FYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        32 sl~~ir~~c~~C~~-----------vr~iL~~~~v~--~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      .+....+||+.|..           ++..|..+||.  ++++.+......++        ...-|.|.|||+        
T Consensus         7 ~l~~~g~tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~~~~~~--------~~~S~~I~inG~--------   70 (120)
T PF10865_consen    7 HLDLDGKTCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEEEFARQ--------PLESPTIRINGR--------   70 (120)
T ss_pred             EeecCCCcCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChHHHhhc--------ccCCCeeeECCE--------
Confidence            34444678998864           34456667876  56666644322221        356799999998        


Q ss_pred             hhhhhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCC-CeeeeecC
Q 047313           99 VGLHEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSG-SCKVFRDG  147 (174)
Q Consensus        99 ~~l~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~G-s~k~~~~~  147 (174)
                             .|++|| .+..  ....|..|+      |..|.+ .++++.-+
T Consensus        71 -------piE~~l-~~~v--~~s~C~~c~------~~~g~~~~CRt~~~~  104 (120)
T PF10865_consen   71 -------PIEDLL-GAEV--GESPCESCG------CSCGGDVDCRTLEYE  104 (120)
T ss_pred             -------ehhHhh-CCcc--ccCcccccc------cccCCCccceeEEEC
Confidence                   567777 3333  346787776      555544 36766443

>PLN02378 glutathione S-transferase DHAR1

Probab=94.67  E-value=0.099  Score=41.90  Aligned_cols=62  Identities=15%  Similarity=0.163  Sum_probs=45.3

Q ss_pred             CCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           38 KTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        38 ~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ..||+|.+|+.+|+.+|++|+.+.|..... ..++.++.- ..++|.+..+|..|.-...+...
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP-~G~VPvL~~~~~~l~ES~aI~~Y   79 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISP-QGKVPVLKIDDKWVTDSDVIVGI   79 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCC-CCCCCEEEECCEEecCHHHHHHH
Confidence            469999999999999999998777654321 235666654 77999999888766555444443

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=94.67  E-value=0.13  Score=41.42  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=42.8

Q ss_pred             CCCCcEEEEEe---ecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313           21 GGEDSVIFYTT---SLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR   90 (174)
Q Consensus        21 ~~~~~VvlYtt---sl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~   90 (174)
                      .+.-.|++|++   +|      |+.|..+..+|+..     ++.+..+|+..+.  -.++.+.++ -..+|.+.+  +|+
T Consensus        18 ~~~~~i~~f~~~~a~w------C~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~-V~~~Pt~~~f~~g~   88 (215)
T TIGR02187        18 KNPVEIVVFTDNDKEG------CQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYG-VERVPTTIILEEGK   88 (215)
T ss_pred             CCCeEEEEEcCCCCCC------CCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcC-CCccCEEEEEeCCe
Confidence            34456888988   54      99999999998664     3456677776432  234555566 888999865  655


Q ss_pred             EE
Q 047313           91 YI   92 (174)
Q Consensus        91 ~I   92 (174)
                      .+
T Consensus        89 ~~   90 (215)
T TIGR02187        89 DG   90 (215)
T ss_pred             ee
Confidence            44

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=94.64  E-value=0.36  Score=35.78  Aligned_cols=60  Identities=17%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             CCcEEE-EEeecCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEe
Q 047313           23 EDSVIF-YTTSLRGIRKTFEDCRTIRFLLQSF-----K-VTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIG   93 (174)
Q Consensus        23 ~~~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~~-----~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IG   93 (174)
                      .+.|+| |+.+|      |+.|+.+.-+|+..     + +.|-.+|+..++++    .+..+ -.++|++  |-+|+.++
T Consensus        14 ~~~vVV~F~A~W------CgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~l----a~~~~-V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          14 EKVVVIRFGRDW------DPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDF----NKMYE-LYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             CCEEEEEEECCC------ChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHH----HHHcC-CCCCCEEEEEECCEEEE
Confidence            333444 66664      99999998888542     2 56889999887754    44455 7789988  45888764

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>KOG2813 consensus Predicted molecular chaperone, contains DnaJ domain [Posttranslational modification, protein turnover, chaperones]

Probab=94.63  E-value=0.027  Score=48.82  Aligned_cols=55  Identities=24%  Similarity=0.441  Sum_probs=36.4

Q ss_pred             CCCCCCCCCcceEeCCCCCCCeeeee----------------cCCCCC------CccccccCcccccCccccCCCCC
Q 047313          120 DCSCNGCGNIRFVLCSNCSGSCKVFR----------------DGDDDD------DDELHIRCPECNENGLVKCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~v~C~~C~Gs~k~~~----------------~~~~~~------~~~~~~rC~~CnenGl~~C~~C~  174 (174)
                      ..-|.+|-|++-+.|+.||||...+.                .+.+.+      -+-..++|+.|.-.|+.+|..|+
T Consensus       187 v~~ch~c~gRG~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~~C~tC~grG~k~C~TC~  263 (406)
T KOG2813|consen  187 VTFCHACLGRGAMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIKECHTCKGRGKKPCTTCS  263 (406)
T ss_pred             hhhhhcccCCCceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcccCCcccCCCCccccccc
Confidence            44699999999999999999973221                011100      01126778888888888887774

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=94.40  E-value=0.13  Score=37.48  Aligned_cols=58  Identities=10%  Similarity=0.175  Sum_probs=35.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHH---------hCCCcEEEEECCCCHHH---------HHHHHHhcCCCCCCcEE-
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQ---------SFKVTFYERDVSLHMEF---------RDELWSSLSGRVIPPRL-   85 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~---------~~~v~~~e~Dv~~~~~~---------~~el~~~~g~~~~~P~v-   85 (174)
                      -+|.|+++      .|++|+++...|.         ..++.+..+|+..+...         ..++....+ ...+|.+ 
T Consensus        17 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~-v~~~Pt~~   89 (125)
T cd02951          17 LLLLFSQP------GCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR-VRFTPTVI   89 (125)
T ss_pred             EEEEEeCC------CCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC-CccccEEE
Confidence            45555555      5999998875442         12456677777654211         245666666 7889996 


Q ss_pred             EECC
Q 047313           86 FIKG   89 (174)
Q Consensus        86 FI~G   89 (174)
                      |+++
T Consensus        90 ~~~~   93 (125)
T cd02951          90 FLDP   93 (125)
T ss_pred             EEcC
Confidence            4553

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]

Probab=94.36  E-value=0.16  Score=41.61  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=51.0

Q ss_pred             CChhHHHHHHHHHhCCCcE--EEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313           39 TFEDCRTIRFLLQSFKVTF--YERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~~v~~--~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~  104 (174)
                      .|++|+++.+.|..++++|  +.+|++.-++   +++.++. ...+|.|-.||+.+-+.+.+.+..|+
T Consensus        20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~---~f~~~sp-~~~~P~l~~d~~~~tDs~~Ie~~Lee   83 (221)
T KOG1422|consen   20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE---WFLDISP-GGKPPVLKFDEKWVTDSDKIEEFLEE   83 (221)
T ss_pred             CChhHHHHHHHHHHcCCCceEEEeecCCCcH---HHHhhCC-CCCCCeEEeCCceeccHHHHHHHHHH
Confidence            5999999999999999885  6777776655   5777776 78899999999999988887666544

>PRK10767 chaperone protein DnaJ; Provisional

Probab=94.21  E-value=0.041  Score=48.31  Aligned_cols=52  Identities=23%  Similarity=0.583  Sum_probs=39.1

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|..|+|+..++...++-   .....|+.|+-.|.+   +|+.|.
T Consensus       142 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~---~~~~~C~~C~G~G~~~~~~C~~C~  202 (371)
T PRK10767        142 LVTCDTCHGSGAKPGTSPKTCPTCHGAGQVRMQQGFF---TVQQTCPTCHGRGKIIKDPCKKCH  202 (371)
T ss_pred             cccCCCCCCcccCCCCCCccCCCCCCeeEEEEeeceE---EEEEeCCCCCCceeECCCCCCCCC
Confidence            557999998774      5899999998877655432   135689999998865   788883

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=94.04  E-value=0.28  Score=33.55  Aligned_cols=55  Identities=13%  Similarity=0.129  Sum_probs=41.4

Q ss_pred             ChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           40 FEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        40 c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .+.|.++..+|+..|++|+.+++.....        ......+|.|.+||+.|++...+..+.
T Consensus        17 ~~~~~kv~~~L~elglpye~~~~~~~~~--------~~P~GkVP~L~~dg~vI~eS~aIl~yL   71 (74)
T cd03079          17 NASCLAVQTFLKMCNLPFNVRCRANAEF--------MSPSGKVPFIRVGNQIVSEFGPIVQFV   71 (74)
T ss_pred             CCCHHHHHHHHHHcCCCcEEEecCCccc--------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence            4789999999999999999987533111        111357999999999998877765543

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>PRK14300 chaperone protein DnaJ; Provisional

Probab=94.01  E-value=0.044  Score=48.23  Aligned_cols=52  Identities=23%  Similarity=0.581  Sum_probs=38.9

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|+.|+|+.+++...++-.   ....|+.|+-.|-+   +|+.|.
T Consensus       145 ~~~C~~C~G~g~~~~~~~~~C~~C~G~G~~~~~~g~~~---~~~~C~~C~G~G~~~~~~C~~C~  205 (372)
T PRK14300        145 EVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFT---IEQACHKCQGNGQIIKNPCKKCH  205 (372)
T ss_pred             ccccCCCCCcccCCCCCCccCCCccCeEEEEEeeceEE---EEEeCCCCCccceEeCCCCCCCC
Confidence            45788898876      578999999988776543311   35689999999955   788884

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=94.00  E-value=1  Score=32.25  Aligned_cols=71  Identities=18%  Similarity=0.164  Sum_probs=44.0

Q ss_pred             hhhHhhCCC--CCCCcEEEEEeecCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHhcCCCCCC
Q 047313           12 KGYEEKCPP--GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDELWSSLSGRVIP   82 (174)
Q Consensus        12 ~~~~~~~~~--~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~   82 (174)
                      ..|++.--.  .+..-+|.|+++      .|+.|+.+..+|+.       .++.+-.+|+..++.    +....+ ..++
T Consensus        12 ~~~~~~~~~~~~~~~vlV~F~a~------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~-V~~~   80 (111)
T cd02963          12 SQYENEIVPKSFKKPYLIKITSD------WCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLG-AHSV   80 (111)
T ss_pred             HHHHHhhccccCCCeEEEEEECC------ccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcC-CccC
Confidence            456555433  233345556665      59999877655532       357788888876554    344455 7889


Q ss_pred             cEEE--ECCEEEe
Q 047313           83 PRLF--IKGRYIG   93 (174)
Q Consensus        83 P~vF--I~G~~IG   93 (174)
                      |.++  .+|+.++
T Consensus        81 Pt~~i~~~g~~~~   93 (111)
T cd02963          81 PAIVGIINGQVTF   93 (111)
T ss_pred             CEEEEEECCEEEE
Confidence            9875  5887553

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=93.96  E-value=0.17  Score=37.11  Aligned_cols=61  Identities=15%  Similarity=0.233  Sum_probs=36.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-E--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-I--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I--~G~~IG   93 (174)
                      -+|.|+++      .|++|+.+...+.+      ....|..+|+..+++...+.....|  ..+|.++ +  +|+.++
T Consensus        22 VlV~F~a~------WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g--~~vPt~~f~~~~Gk~~~   91 (117)
T cd02959          22 LMLLIHKT------WCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDG--GYIPRILFLDPSGDVHP   91 (117)
T ss_pred             EEEEEeCC------cCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCC--CccceEEEECCCCCCch
Confidence            35556666      49999999887766      3446888888766432222111111  2489884 4  455443

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=93.46  E-value=0.73  Score=36.41  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHH--hCCCcEEEEEC
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ--SFKVTFYERDV   62 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~--~~~v~~~e~Dv   62 (174)
                      +.++..|++|+-.      .||+|+++...|.  ..++.+..+-+
T Consensus        75 ~~~~~~i~~f~D~------~Cp~C~~~~~~l~~~~~~v~v~~~~~  113 (197)
T cd03020          75 GNGKRVVYVFTDP------DCPYCRKLEKELKPNADGVTVRIFPV  113 (197)
T ss_pred             CCCCEEEEEEECC------CCccHHHHHHHHhhccCceEEEEEEc
Confidence            3455677888876      7999999999997  35666655544

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=93.38  E-value=0.6  Score=32.98  Aligned_cols=55  Identities=11%  Similarity=0.080  Sum_probs=38.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC------------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~   90 (174)
                      -+|.|.++      .|+.|+.+...|+..            .+.|-.+|...+..    +.+..+ ..++|.++  -+|+
T Consensus        21 vlv~F~a~------wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~-v~~~Ptl~~~~~g~   89 (108)
T cd02996          21 VLVNFYAD------WCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESD----IADRYR-INKYPTLKLFRNGM   89 (108)
T ss_pred             EEEEEECC------CCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHH----HHHhCC-CCcCCEEEEEeCCc
Confidence            45566666      499999998877531            36778888877644    455556 88999885  3554

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=93.36  E-value=0.28  Score=34.11  Aligned_cols=52  Identities=10%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      .+|.|+++      .|+.|..+...|+.       .++.+..+|+..++.+    ...++ ..++|.+++
T Consensus        19 ~lv~f~a~------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~----~~~~~-i~~~Pt~~~   77 (101)
T cd02994          19 WMIEFYAP------WCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGL----SGRFF-VTALPTIYH   77 (101)
T ss_pred             EEEEEECC------CCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhH----HHHcC-CcccCEEEE
Confidence            56677776      49999998877753       2467788888776653    33445 778999875

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PLN02395 glutathione S-transferase

Probab=93.27  E-value=0.3  Score=38.62  Aligned_cols=69  Identities=14%  Similarity=0.056  Sum_probs=49.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ++||+..       -+.+.+++-+|..+|++|+.+.|...  .....++.++.- ...+|.|..+|..|.....+.+..
T Consensus         3 ~~ly~~~-------~~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~~~l~ES~aI~~YL   73 (215)
T PLN02395          3 LKVYGPA-------FASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQP-FGVVPVIVDGDYKIFESRAIMRYY   73 (215)
T ss_pred             EEEEcCC-------cCcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCC-CCCCCEEEECCEEEEcHHHHHHHH
Confidence            6888853       24579999999999999998877532  122345666654 679999998887776665555543

>PRK14285 chaperone protein DnaJ; Provisional

Probab=93.26  E-value=0.086  Score=46.32  Aligned_cols=52  Identities=29%  Similarity=0.748  Sum_probs=38.0

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++...++-   .....|+.|+-.|-+   +|+.|.
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~  206 (365)
T PRK14285        146 NMLCESCLGKKSEKGTSPSICNMCNGSGRVMQGGGFF---RVTTTCPKCYGNGKIISNPCKSCK  206 (365)
T ss_pred             cccCCCCCCcccCCCCCCccCCCccCceeEEecCcee---EEeeecCCCCCcccccCCCCCCCC
Confidence            457999988874      5799999998777543331   136789999988854   688774

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=93.12  E-value=1.3  Score=30.28  Aligned_cols=57  Identities=16%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~I   92 (174)
                      -++.|+.+      .|+.|+.+...|+.      ..+.+..+|+...++    +.+..+ ...+|.+  |.+|+.+
T Consensus        17 v~v~f~~~------~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~~-i~~~Pt~~~~~~g~~~   81 (97)
T cd02984          17 LVLHFWAP------WAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKFE-ITAVPTFVFFRNGTIV   81 (97)
T ss_pred             EEEEEECC------CCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhcC-CccccEEEEEECCEEE
Confidence            34455554      69999999888875      246677777765544    444455 7789976  4577654

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=93.09  E-value=0.62  Score=31.82  Aligned_cols=55  Identities=11%  Similarity=0.149  Sum_probs=37.2

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHh-------C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-------F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      +...+++|+++      .|+.|+.+...|+.       . ++.+..+|...+..    +.+.++ ...+|.+++
T Consensus        13 ~~~~~i~f~~~------~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~-i~~~P~~~~   75 (102)
T TIGR01126        13 NKDVLVEFYAP------WCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRFG-VSGFPTIKF   75 (102)
T ss_pred             CCcEEEEEECC------CCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhCC-CCcCCEEEE
Confidence            44557777777      59999987666643       1 36677888766544    445556 788998843

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=93.08  E-value=0.8  Score=30.68  Aligned_cols=53  Identities=15%  Similarity=0.207  Sum_probs=35.5

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      .-+++|+++      .|+.|..+...|..    .    ++.+..+|...+.    ++.+.++ ...+|.+++
T Consensus        17 ~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~-i~~~Pt~~~   77 (101)
T cd02961          17 DVLVEFYAP------WCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYG-VRGYPTIKL   77 (101)
T ss_pred             cEEEEEECC------CCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCC-CCCCCEEEE
Confidence            556666665      69999998887754    3    3556667765533    3455556 788998854

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PRK10357 putative glutathione S-transferase; Provisional

Probab=93.01  E-value=0.22  Score=39.02  Aligned_cols=64  Identities=16%  Similarity=-0.011  Sum_probs=44.6

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEV   98 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del   98 (174)
                      .+|+..      .+++.++++.+|+.+||+|+.+++..... ..++.++.. ...+|.+.. +|..|-....+
T Consensus         2 ~Ly~~~------~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP-~g~vP~L~~~~g~~l~eS~aI   66 (202)
T PRK10357          2 KLIGSY------TSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNP-LGKVPALVTEEGECWFDSPII   66 (202)
T ss_pred             eeecCC------CCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCC-ccCCCeEEeCCCCeeecHHHH
Confidence            578876      58999999999999999999988754211 123444443 678999985 56555443333

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=92.80  E-value=0.95  Score=30.43  Aligned_cols=60  Identities=15%  Similarity=0.171  Sum_probs=44.9

Q ss_pred             CCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           35 GIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        35 ~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      +.....|+|-++..+|+-.+++|+.+... ++.        .+....+|.|..+|+.|+|++.+.+..+
T Consensus        11 g~ps~sp~clk~~~~Lr~~~~~~~v~~~~-n~~--------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~   70 (73)
T cd03078          11 GLPSVDPECLAVLAYLKFAGAPLKVVPSN-NPW--------RSPTGKLPALLTSGTKISGPEKIIEYLR   70 (73)
T ss_pred             CCCcCCHHHHHHHHHHHcCCCCEEEEecC-CCC--------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence            44556799999999999999999665332 211        1114579999999999999988877644

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=92.80  E-value=0.48  Score=37.66  Aligned_cols=54  Identities=17%  Similarity=0.221  Sum_probs=40.7

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      ++||..+       .+.+.+|+-+|+.+||+|+.++|...  +....++.++.- ...+|.+..
T Consensus         2 ~~Ly~~~-------~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP-~gkVP~L~~   57 (215)
T PRK13972          2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISP-NNKIPAIVD   57 (215)
T ss_pred             eEEEECC-------CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCc-CCCCCEEEe
Confidence            4688764       47899999999999999998877543  223456766654 679999987

>PRK14284 chaperone protein DnaJ; Provisional

Probab=92.78  E-value=0.1  Score=46.25  Aligned_cols=52  Identities=31%  Similarity=0.714  Sum_probs=36.8

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++...+.-   .....|+.|+-.|-+   +|+.|.
T Consensus       158 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~  218 (391)
T PRK14284        158 YKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFF---SMASTCPECGGEGRVITDPCSVCR  218 (391)
T ss_pred             eccCCCCcccccCCCCCCeecCccCCeeEEEEEeceE---EEEEECCCCCCCCcccCCcCCCCC
Confidence            457888887764      5799999997776543321   135789999888854   687773

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=92.73  E-value=1.2  Score=34.99  Aligned_cols=63  Identities=17%  Similarity=0.248  Sum_probs=42.5

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD   96 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d   96 (174)
                      ..|||+...     +.|+.|..+...|+.    + .+.|..+|+...     ++...++ ...+|.+  |.+|+.++.+.
T Consensus        84 ~~VVV~Fya-----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~-v~~vPTlllyk~G~~v~~~v  152 (175)
T cd02987          84 TTVVVHIYE-----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFD-TDALPALLVYKGGELIGNFV  152 (175)
T ss_pred             cEEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCC-CCCCCEEEEEECCEEEEEEe
Confidence            356665553     369999988877754    2 467888888642     5666666 7889977  55998775443


Q ss_pred             h
Q 047313           97 E   97 (174)
Q Consensus        97 e   97 (174)
                      .
T Consensus       153 G  153 (175)
T cd02987         153 R  153 (175)
T ss_pred             c
Confidence            3

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=92.63  E-value=0.62  Score=35.94  Aligned_cols=75  Identities=12%  Similarity=0.104  Sum_probs=57.6

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC---CCCCcEEEECCEEEecc---
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG---RVIPPRLFIKGRYIGGA---   95 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~---~~~~P~vFI~G~~IGG~---   95 (174)
                      ...++++|-++      +|.=|..--+.|+.+|+.+..++...    ...+++++|-   ..+-=+..|+|.||=|.   
T Consensus        24 ~~~~~~vyksP------nCGCC~~w~~~mk~~Gf~Vk~~~~~d----~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa   93 (149)
T COG3019          24 QATEMVVYKSP------NCGCCDEWAQHMKANGFEVKVVETDD----FLALKRRLGIPYEMQSCHTAVINGYYVEGHVPA   93 (149)
T ss_pred             ceeeEEEEeCC------CCccHHHHHHHHHhCCcEEEEeecCc----HHHHHHhcCCChhhccccEEEEcCEEEeccCCH
Confidence            45688999987      89999999999999999998887744    3456665652   34557889999999775   


Q ss_pred             chhhhhhhcCc
Q 047313           96 DEVVGLHEQGK  106 (174)
Q Consensus        96 del~~l~e~G~  106 (174)
                      +++.+|.+++.
T Consensus        94 ~aI~~ll~~~p  104 (149)
T COG3019          94 EAIARLLAEKP  104 (149)
T ss_pred             HHHHHHHhCCC
Confidence            66767766655

>PRK14287 chaperone protein DnaJ; Provisional

Probab=92.62  E-value=0.11  Score=45.69  Aligned_cols=55  Identities=24%  Similarity=0.527  Sum_probs=37.9

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|..|+|+..++......-+ ......|+.|+-.|.+   +|+.|.
T Consensus       138 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  202 (371)
T PRK14287        138 EETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCG  202 (371)
T ss_pred             eccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCC
Confidence            45789998876      4679999999877654322100 0124689999999965   688874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=92.51  E-value=0.11  Score=45.76  Aligned_cols=55  Identities=25%  Similarity=0.587  Sum_probs=37.3

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++....... .......|+.|+-.|-+   +|+.|.
T Consensus       141 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  205 (377)
T PRK14298        141 AERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCS  205 (377)
T ss_pred             eccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCC
Confidence            457999999875      67999999987764432100 01135788999888844   688773

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.48  E-value=0.29  Score=38.74  Aligned_cols=66  Identities=14%  Similarity=0.122  Sum_probs=48.7

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHhcCCCCCCcEEEECCE-EEeccchhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM-EFRDELWSSLSGRVIPPRLFIKGR-YIGGADEVV   99 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~-~~~~el~~~~g~~~~~P~vFI~G~-~IGG~del~   99 (174)
                      ++|...      ..+++.+++-+|..+|++|+.+.|.... ....++..+.. ...+|.|..++- .|-....|.
T Consensus         2 ~L~~~~------~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP-~gkVPvL~~~~~~~l~ES~AI~   69 (211)
T COG0625           2 KLYGSP------TSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNP-LGKVPALVDDDGEVLTESGAIL   69 (211)
T ss_pred             eeecCC------CCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCC-CCCCCEEeeCCCCeeecHHHHH
Confidence            467765      3499999999999999999999887664 44566767665 789999998774 444443333

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=92.41  E-value=0.66  Score=34.51  Aligned_cols=62  Identities=11%  Similarity=0.068  Sum_probs=43.0

Q ss_pred             CCCcEEEEEeecCCCCCCCh--hHH----------HHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EE
Q 047313           22 GEDSVIFYTTSLRGIRKTFE--DCR----------TIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FI   87 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~--~C~----------~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI   87 (174)
                      ++..||+|..+|-     |+  +|+          .+..+|+..++.+-.+|+..++++    .+.+| -..+|+|  |.
T Consensus        26 ~~~~vvv~f~a~w-----c~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~L----a~~~~-I~~iPTl~lfk   95 (120)
T cd03065          26 YDVLCLLYHEPVE-----SDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKV----AKKLG-LDEEDSIYVFK   95 (120)
T ss_pred             CCceEEEEECCCc-----CChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHH----HHHcC-CccccEEEEEE
Confidence            3446777777752     43  475          345566677899999999887664    44456 7788887  67


Q ss_pred             CCEEEe
Q 047313           88 KGRYIG   93 (174)
Q Consensus        88 ~G~~IG   93 (174)
                      ||+.+.
T Consensus        96 ~G~~v~  101 (120)
T cd03065          96 DDEVIE  101 (120)
T ss_pred             CCEEEE
Confidence            998664

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=92.18  E-value=0.98  Score=30.77  Aligned_cols=58  Identities=14%  Similarity=0.149  Sum_probs=37.4

Q ss_pred             hhHHHHHHHHHhCCCcEEEEECCCCH--HH-HHHHHHhc---C-CCCCCcEEEECCEEEeccchh
Q 047313           41 EDCRTIRFLLQSFKVTFYERDVSLHM--EF-RDELWSSL---S-GRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        41 ~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~-~~el~~~~---g-~~~~~P~vFI~G~~IGG~del   98 (174)
                      +.|.+++.+|...|++|+.+.|....  .. ..+.....   + ...++|.+.++|..+.-...+
T Consensus        10 ~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AI   74 (82)
T cd03075          10 GLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAI   74 (82)
T ss_pred             cccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHH
Confidence            68899999999999999988775432  11 11221111   1 256899999888766444333

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=92.15  E-value=1.1  Score=31.44  Aligned_cols=56  Identities=11%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----CC---CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----FK---VTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~---v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~I   92 (174)
                      -|+.|+++      -|+.|+.+...|+.    ++   +.|..+|+. +++    +.+..+ ...+|.+  |-+|+.+
T Consensus        20 vvv~F~a~------wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~----~~~~~~-v~~~Pt~~~~~~g~~~   84 (102)
T cd02948          20 TVVDVYQE------WCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TID----TLKRYR-GKCEPTFLFYKNGELV   84 (102)
T ss_pred             EEEEEECC------cCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHH----HHHHcC-CCcCcEEEEEECCEEE
Confidence            44555555      49999988877754    32   456777776 332    344455 7788866  4477643

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation

Probab=92.14  E-value=0.18  Score=33.42  Aligned_cols=37  Identities=27%  Similarity=0.716  Sum_probs=24.9

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENG  166 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenG  166 (174)
                      ...|..|.|.+++               +|+.|+|+.+++  +        ..+|+.|+=+|
T Consensus        15 ~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i--~--------~~~C~~C~G~g   66 (66)
T PF00684_consen   15 PKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKII--E--------KDPCKTCKGSG   66 (66)
T ss_dssp             -EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE---T--------SSB-SSSTTSS
T ss_pred             CcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEE--C--------CCCCCCCCCcC
Confidence            4579999998876               799999998885  1        46788887654

DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A.

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=92.12  E-value=1.7  Score=31.78  Aligned_cols=69  Identities=14%  Similarity=0.203  Sum_probs=48.5

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      ...+++||-=|+     +|+=...|..-|+..      .+++..+||-.++..-.++.+.+|=...-||+++  ||+.+-
T Consensus        18 ~~~~~~iFKHSt-----~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~g~~v~   92 (105)
T PF11009_consen   18 KEKPVLIFKHST-----RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKNGKVVW   92 (105)
T ss_dssp             --SEEEEEEE-T-----T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEETTEEEE
T ss_pred             ccCcEEEEEeCC-----CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEECCEEEE
Confidence            556789998885     699999988877652      3899999999999999999999986678899964  888764


Q ss_pred             cc
Q 047313           94 GA   95 (174)
Q Consensus        94 G~   95 (174)
                      ..
T Consensus        93 ~a   94 (105)
T PF11009_consen   93 HA   94 (105)
T ss_dssp             EE
T ss_pred             EC
Confidence            43

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=92.11  E-value=1.1  Score=31.22  Aligned_cols=55  Identities=13%  Similarity=0.053  Sum_probs=37.1

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECC
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKG   89 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G   89 (174)
                      .-+|.|+++      .|+.|+.+...++.    +  .+.+-.+|...+++    +.+..+ ...+|+++  .+|
T Consensus        21 ~v~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-i~~~Pt~~~~~~g   83 (104)
T cd03004          21 PWLVDFYAP------WCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQAN-IRAYPTIRLYPGN   83 (104)
T ss_pred             eEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcC-CCcccEEEEEcCC
Confidence            455566666      59999988777753    2  36788889876554    344445 78899874  355

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>PTZ00057 glutathione s-transferase; Provisional

Probab=92.10  E-value=0.93  Score=35.90  Aligned_cols=71  Identities=10%  Similarity=0.186  Sum_probs=47.6

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH-HH--HHHHH-hcCCCCCCcEEEECCEEEeccchhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME-FR--DELWS-SLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~-~~--~el~~-~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      ++++||..+.      -+.+..++-+|+..||+|+.+.+....+ +.  +++.. .......+|.+.+||..|.....+.
T Consensus         3 ~~~~L~y~~~------~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~   76 (205)
T PTZ00057          3 EEIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIV   76 (205)
T ss_pred             CceEEEecCC------CcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHH
Confidence            4488998763      4788899999999999999998754321 11  11111 1233678999999997666554444


Q ss_pred             h
Q 047313          100 G  100 (174)
Q Consensus       100 ~  100 (174)
                      .
T Consensus        77 ~   77 (205)
T PTZ00057         77 R   77 (205)
T ss_pred             H
Confidence            3

>PRK14286 chaperone protein DnaJ; Provisional

Probab=92.10  E-value=0.12  Score=45.58  Aligned_cols=52  Identities=27%  Similarity=0.602  Sum_probs=36.8

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCcc---ccCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL---VKCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl---~~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++...++-   .....|+.|+-.|.   .+|+.|.
T Consensus       150 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~  210 (372)
T PRK14286        150 LESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFF---SVATTCPTCRGKGTVISNPCKTCG  210 (372)
T ss_pred             cccCCCCcCCCcCCCCCCccCCCCcCeEEEEEEeceE---EEEEeCCCCCceeeEecccCCCCC
Confidence            457999999875      6899999998776554321   13568888887774   3677773

>PRK14288 chaperone protein DnaJ; Provisional

Probab=92.09  E-value=0.12  Score=45.37  Aligned_cols=52  Identities=23%  Similarity=0.607  Sum_probs=36.8

Q ss_pred             CCCCCCCCCcce-----EeCCCCCCCeeeeecCCCCCCccccccCcccccCcc---ccCCCCC
Q 047313          120 DCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL---VKCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl---~~C~~C~  174 (174)
                      ...|..|.|.+.     ..|+.|+|+..+....++-   .....|+.|+-.|.   .+|+.|.
T Consensus       140 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~g~~---~~~~~C~~C~G~G~~~~~~C~~C~  199 (369)
T PRK14288        140 QSVCESCDGTGAKDKALETCKQCNGQGQVFMRQGFM---SFAQTCGACQGKGKIIKTPCQACK  199 (369)
T ss_pred             eccCCCCCCcccCCCCCcCCCCCCCCcEEEEEeceE---EEEEecCCCCCCceEccccCccCC
Confidence            447889988774     5699999998776555431   13568888888884   4677773

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=92.07  E-value=0.5  Score=31.68  Aligned_cols=54  Identities=19%  Similarity=0.129  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCC-CCCcEEEEC-CEEEeccc
Q 047313           42 DCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGR-VIPPRLFIK-GRYIGGAD   96 (174)
Q Consensus        42 ~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~-~~~P~vFI~-G~~IGG~d   96 (174)
                      .+..++.+|+..|++|+.+.++.  .+...+++.+..- . ..+|.+.++ |..+-..-
T Consensus        11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p-~~g~vP~l~~~~~~~l~es~   68 (76)
T PF02798_consen   11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINP-MFGKVPALEDGDGFVLTESN   68 (76)
T ss_dssp             TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTT-TSSSSSEEEETTTEEEESHH
T ss_pred             chHHHHHHHHHhcccCceEEEecccccccchhhhhccc-ccceeeEEEECCCCEEEcHH
Confidence            88999999999999998886653  3333366666654 5 799999999 87765443

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=92.00  E-value=0.34  Score=36.45  Aligned_cols=56  Identities=13%  Similarity=0.036  Sum_probs=35.0

Q ss_pred             HHHHHHHHhCCCcEEEEECCCCHHH-------HHHHHHhcCCCCCCcEEEECCEEE--eccchhhhh
Q 047313           44 RTIRFLLQSFKVTFYERDVSLHMEF-------RDELWSSLSGRVIPPRLFIKGRYI--GGADEVVGL  101 (174)
Q Consensus        44 ~~vr~iL~~~~v~~~e~Dv~~~~~~-------~~el~~~~g~~~~~P~vFI~G~~I--GG~del~~l  101 (174)
                      ..+...|+++|+.+...+++.++..       .+.|.. .| ...+|.++|||+.+  |.|=...+|
T Consensus        30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~G-~e~LPitlVdGeiv~~G~YPt~eEl   94 (123)
T PF06953_consen   30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT-EG-AEALPITLVDGEIVKTGRYPTNEEL   94 (123)
T ss_dssp             HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H--GGG-SEEEETTEEEEESS---HHHH
T ss_pred             HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH-cC-cccCCEEEECCEEEEecCCCCHHHH
Confidence            4556778899999999999987553       232322 24 88999999999875  666444333

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>PRK14301 chaperone protein DnaJ; Provisional

Probab=91.99  E-value=0.12  Score=45.58  Aligned_cols=52  Identities=31%  Similarity=0.784  Sum_probs=36.6

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..+....++-   .....|+.|+-.|-+   +|+.|.
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~  204 (373)
T PRK14301        144 NVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFF---QIAVPCPVCRGEGRVITHPCPKCK  204 (373)
T ss_pred             cccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeE---EEEEeCCCCCceeeecCCCCCCCC
Confidence            457888888775      5799999998776544331   136788888888754   677773

>PRK14282 chaperone protein DnaJ; Provisional

Probab=91.95  E-value=0.14  Score=45.02  Aligned_cols=55  Identities=22%  Similarity=0.506  Sum_probs=36.4

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++......- -......|+.|+-.|.+   +|+.|.
T Consensus       152 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  216 (369)
T PRK14282        152 YETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECG  216 (369)
T ss_pred             cccCCCCCccCCCCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCC
Confidence            457888888764      67999999987764331100 01125689999888855   577773

>PRK14291 chaperone protein DnaJ; Provisional

Probab=91.92  E-value=0.14  Score=45.26  Aligned_cols=52  Identities=27%  Similarity=0.804  Sum_probs=38.3

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc--cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV--KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~--~C~~C~  174 (174)
                      ...|..|.|.+      ...|+.|+|+..++....+.   .....|+.|+-.|.+  +|+.|.
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~---~~~~~C~~C~G~G~~~~~C~~C~  215 (382)
T PRK14291        156 YVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFF---RISQTCPTCGGEGVLREPCSKCN  215 (382)
T ss_pred             eccCCCCccccCCCCCCCccCCCCCCceEEEEecceE---EEEecCCCCCCceEEccCCCCCC
Confidence            45799999877      56799999998877664331   136789999988854  577773

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=91.90  E-value=0.94  Score=31.06  Aligned_cols=53  Identities=13%  Similarity=0.172  Sum_probs=34.8

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C----CCcEEEEECCC-CHHHHHHHHHhcCCCCCCcEEEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F----KVTFYERDVSL-HMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~----~v~~~e~Dv~~-~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      .-++.|+++      .|+.|+.....+..    +    ++.+-.+|... ++.+    .+.++ ...+|.+++
T Consensus        20 ~~~v~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~-i~~~P~~~~   81 (105)
T cd02998          20 DVLVEFYAP------WCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDL----AKKYG-VSGFPTLKF   81 (105)
T ss_pred             cEEEEEECC------CCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhh----HHhCC-CCCcCEEEE
Confidence            346666666      59999988777744    2    35677777766 4443    33345 678998864

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=91.79  E-value=0.36  Score=41.56  Aligned_cols=76  Identities=13%  Similarity=0.243  Sum_probs=51.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD   96 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d   96 (174)
                      +|+||..+     +.|+.|....-+|+..      ++..-.+|+..++.+...    +| ..++|.|  |++|+.|-||-
T Consensus        45 PVlV~fWa-----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaq----fg-iqsIPtV~af~dGqpVdgF~  114 (304)
T COG3118          45 PVLVDFWA-----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQ----FG-VQSIPTVYAFKDGQPVDGFQ  114 (304)
T ss_pred             CeEEEecC-----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHH----hC-cCcCCeEEEeeCCcCccccC
Confidence            45555544     3599999999999863      244567778777765444    45 8889988  79999987774


Q ss_pred             hhhhhhhcCchhHHhhc
Q 047313           97 EVVGLHEQGKLKKLLEG  113 (174)
Q Consensus        97 el~~l~e~G~L~~~L~~  113 (174)
                      -.   ..+-.|+++|+.
T Consensus       115 G~---qPesqlr~~ld~  128 (304)
T COG3118         115 GA---QPESQLRQFLDK  128 (304)
T ss_pred             CC---CcHHHHHHHHHH
Confidence            43   233345555544

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=91.74  E-value=1.1  Score=34.63  Aligned_cols=63  Identities=13%  Similarity=0.241  Sum_probs=41.0

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHh----C---CCcEEEEECCCCHHHHHHHHHhc-CCCCCCcEE--EECCEEEec
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQS----F---KVTFYERDVSLHMEFRDELWSSL-SGRVIPPRL--FIKGRYIGG   94 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~----~---~v~~~e~Dv~~~~~~~~el~~~~-g~~~~~P~v--FI~G~~IGG   94 (174)
                      ||.|.++      .|+.|+.+...|+.    +   ++.+-.+|+..+++..+.+.-.. -+...+|++  |.+|+.++-
T Consensus        51 vV~Fya~------wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r  123 (152)
T cd02962          51 LVEFFTT------WSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR  123 (152)
T ss_pred             EEEEECC------CCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence            6666666      59999998877743    2   47889999988876655442111 012348876  568886643

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PRK14294 chaperone protein DnaJ; Provisional

Probab=91.69  E-value=0.16  Score=44.65  Aligned_cols=52  Identities=27%  Similarity=0.617  Sum_probs=36.9

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++...++-   .....|+.|+-.|-+   +|+.|.
T Consensus       144 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~---~~~~~C~~C~G~G~~~~~~C~~C~  204 (366)
T PRK14294        144 LETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFF---SIRTTCPRCRGMGKVIVSPCKTCH  204 (366)
T ss_pred             cccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeE---EEEeeCCCCCCcCeecCcCCCCCC
Confidence            457888888775      5799999997776443321   136788888888855   677773

>PRK14289 chaperone protein DnaJ; Provisional

Probab=91.63  E-value=0.15  Score=45.07  Aligned_cols=55  Identities=29%  Similarity=0.611  Sum_probs=37.3

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|..|+|+..++..-...-+ ......|+.|+-.|-+   +|+.|.
T Consensus       154 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  218 (386)
T PRK14289        154 YVPCSHCHGTGAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCG  218 (386)
T ss_pred             ecccCCCCCCCCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCC
Confidence            457888988775      679999999877654321000 0125789999888854   788773

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=91.62  E-value=1.4  Score=30.26  Aligned_cols=52  Identities=12%  Similarity=0.066  Sum_probs=34.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      -+++|.++      .|+.|+.....|..      ..+.+..+|+..+++    +.+..+ ...+|.+++
T Consensus        21 vlv~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~~~-i~~~P~~~~   78 (103)
T cd03001          21 WLVEFYAP------WCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQS----LAQQYG-VRGFPTIKV   78 (103)
T ss_pred             EEEEEECC------CCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHH----HHHHCC-CCccCEEEE
Confidence            34455554      69999998877754      246678888866554    344445 778998743

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PRK14280 chaperone protein DnaJ; Provisional

Probab=91.58  E-value=0.18  Score=44.48  Aligned_cols=55  Identities=31%  Similarity=0.650  Sum_probs=37.3

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|+.|+|+..++......-+ ......|+.|+-.|.+   +|+.|.
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  207 (376)
T PRK14280        143 EETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCH  207 (376)
T ss_pred             eccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCC
Confidence            45799999987      4679999999877654321100 1135689999888854   688773

>PRK11752 putative S-transferase; Provisional

Probab=91.41  E-value=0.85  Score=37.96  Aligned_cols=73  Identities=10%  Similarity=0.172  Sum_probs=49.8

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECC--
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKG--   89 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G--   89 (174)
                      |.+.+.++||+.       ..+++.+|+-+|+..      +++|+.+.|..  .+....++.++.- ..++|.+..++  
T Consensus        39 ~~~~~~~~Ly~~-------~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP-~GkVP~Lv~~dg~  110 (264)
T PRK11752         39 PVGKHPLQLYSL-------GTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINP-NSKIPALLDRSGN  110 (264)
T ss_pred             CCCCCCeEEecC-------CCCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCC-CCCCCEEEeCCCC
Confidence            556668999985       369999999999986      88888766643  2223456666654 67899998753  


Q ss_pred             --EEEeccchhhh
Q 047313           90 --RYIGGADEVVG  100 (174)
Q Consensus        90 --~~IGG~del~~  100 (174)
                        ..|-....|.+
T Consensus       111 ~~~~L~ES~AIl~  123 (264)
T PRK11752        111 PPIRVFESGAILL  123 (264)
T ss_pred             CCeEEEcHHHHHH
Confidence              34544444433

>PRK14295 chaperone protein DnaJ; Provisional

Probab=91.38  E-value=0.16  Score=45.00  Aligned_cols=52  Identities=31%  Similarity=0.810  Sum_probs=36.9

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++...+.   .....+|+.|+-.|.+   +|+.|.
T Consensus       166 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~  226 (389)
T PRK14295        166 QAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGG---FSLSEPCPDCKGRGLIADDPCLVCK  226 (389)
T ss_pred             cccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecc---eEEEEecCCCcceeEEeccCCCCCC
Confidence            456888888774      679999999776654322   1246789999888865   587773

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=91.32  E-value=1.2  Score=30.93  Aligned_cols=56  Identities=13%  Similarity=0.155  Sum_probs=37.3

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR   90 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~   90 (174)
                      .-+|.|+++      .|+.|+.+...++..      .+.+-.+|+..++.    +.+..+ -..+|++++  +|+
T Consensus        20 ~~~v~f~a~------wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~g~   83 (101)
T cd03003          20 IWFVNFYSP------RCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQG-VNSYPSLYVFPSGM   83 (101)
T ss_pred             eEEEEEECC------CChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcC-CCccCEEEEEcCCC
Confidence            345556665      599999988887542      35677888877654    333445 678898843  564

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>PRK14297 chaperone protein DnaJ; Provisional

Probab=91.28  E-value=0.18  Score=44.49  Aligned_cols=55  Identities=20%  Similarity=0.517  Sum_probs=37.2

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++......- ......+|+.|+-.|.+   +|+.|.
T Consensus       148 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  212 (380)
T PRK14297        148 NENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCH  212 (380)
T ss_pred             eccCCCcccccccCCCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCC
Confidence            457999988875      57999999987765431100 01135789999888855   687773

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=91.16  E-value=0.2  Score=43.68  Aligned_cols=55  Identities=25%  Similarity=0.571  Sum_probs=37.4

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|..|+|+..++......- .......|+.|+-.|.+   +|+.|.
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  207 (354)
T TIGR02349       143 KESCETCHGTGAKPGTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCK  207 (354)
T ss_pred             CCcCCCCCCCCCCCCCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCC
Confidence            45799999887      567999999987765443100 00124689999888864   588773

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=91.15  E-value=1.2  Score=31.39  Aligned_cols=55  Identities=13%  Similarity=0.161  Sum_probs=36.7

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECC-CCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVS-LHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~-~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      ++.-+|.|+++|      |+.|+.....|+.     .++.+..+|.. .++    .+.+..+ ...+|++++
T Consensus        18 g~~vlV~F~a~W------C~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~-V~~~PT~~l   78 (100)
T cd02999          18 EDYTAVLFYASW------CPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYG-VVGFPTILL   78 (100)
T ss_pred             CCEEEEEEECCC------CHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcC-CeecCEEEE
Confidence            344566666664      9999999887755     24667777776 444    3445556 788998753

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PRK14290 chaperone protein DnaJ; Provisional

Probab=91.05  E-value=0.21  Score=43.85  Aligned_cols=55  Identities=22%  Similarity=0.517  Sum_probs=35.5

Q ss_pred             CCCCCCCCCcce-----EeCCCCCCCeeeeecCCCCC-CccccccCcccccCc---cccCCCCC
Q 047313          120 DCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENG---LVKCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenG---l~~C~~C~  174 (174)
                      ...|..|.|.+.     ..|+.|+|+..+...-...- ......+|+.|+-.|   ..+|+.|.
T Consensus       149 ~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~  212 (365)
T PRK14290        149 NAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCN  212 (365)
T ss_pred             cccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCC
Confidence            456888888775     57999999976654332110 000136799998888   44788773

>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]

Probab=90.94  E-value=0.68  Score=39.27  Aligned_cols=67  Identities=18%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             CcEEEEEee-cCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           24 DSVIFYTTS-LRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        24 ~~VvlYtts-l~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      +.|-+|.-+ ...+.---|+|-++..+|+.++|+|+.++-++        +.++ ...++|-|-+||++|.+.+-+.
T Consensus        44 D~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~--------~~rS-r~G~lPFIELNGe~iaDS~~I~  111 (281)
T KOG4244|consen   44 DTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSL--------KRRS-RNGTLPFIELNGEHIADSDLIE  111 (281)
T ss_pred             CeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccc--------eeec-cCCCcceEEeCCeeccccHHHH
Confidence            445555543 12223345899999999999999999998743        2222 2569999999999999887653

>PRK14296 chaperone protein DnaJ; Provisional

Probab=90.90  E-value=0.19  Score=44.36  Aligned_cols=55  Identities=25%  Similarity=0.571  Sum_probs=36.1

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..++..-...- .......|+.|+=.|-+   +|+.|.
T Consensus       149 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~  213 (372)
T PRK14296        149 LTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCK  213 (372)
T ss_pred             eeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCC
Confidence            457999998875      56999999987765432100 00024578888877755   577773

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=90.83  E-value=0.88  Score=31.78  Aligned_cols=54  Identities=11%  Similarity=0.097  Sum_probs=34.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      -++.|.++      .|+.|+.+...|+..      .+.+-.+|+..+.  ..++.+..+ ...+|.+++
T Consensus        21 ~lv~f~a~------wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~-i~~~Pt~~~   80 (109)
T cd03002          21 TLVEFYAP------WCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYG-VQGFPTLKV   80 (109)
T ss_pred             EEEEEECC------CCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcC-CCcCCEEEE
Confidence            56666666      599999887766542      3456667776521  123444556 788998864

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=90.74  E-value=0.19  Score=44.54  Aligned_cols=51  Identities=24%  Similarity=0.633  Sum_probs=35.4

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFC  173 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C  173 (174)
                      ...|..|.|.+.      ..|+.|+|+..++...+.-   .....|+.|+-.|.+   +|+.|
T Consensus       173 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~---~~~~~C~~C~G~G~~i~~~C~~C  232 (392)
T PRK14279        173 PAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAF---GFSEPCTDCRGTGSIIEDPCEEC  232 (392)
T ss_pred             cccCCCCccccccCCCCCCCCCCCcceEEEEEEecce---EEEEecCCCCceeEEeCCcCCCC
Confidence            457888988875      5699999997776544321   135788888877743   57666

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=90.67  E-value=0.84  Score=30.37  Aligned_cols=32  Identities=13%  Similarity=0.149  Sum_probs=23.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVS   63 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~   63 (174)
                      |++|+..      .||+|..+...|+..      ++.++.+.+.
T Consensus         1 i~~f~d~------~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~   38 (98)
T cd02972           1 IVEFFDP------LCPYCYLFEPELEKLLYADDGGVRVVYRPFP   38 (98)
T ss_pred             CeEEECC------CCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence            4567766      799999998888763      4667766653

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=90.65  E-value=0.93  Score=31.13  Aligned_cols=57  Identities=19%  Similarity=0.283  Sum_probs=36.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~I   92 (174)
                      -++.|+++      .|+.|+.....|+.    +     .+.+-.+|.+.+..    +.+..+ ...+|.++  -+|+.+
T Consensus        19 ~lv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~g~~~   86 (102)
T cd03005          19 HFVKFFAP------WCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQ-VRGYPTLLLFKDGEKV   86 (102)
T ss_pred             EEEEEECC------CCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcC-CCcCCEEEEEeCCCee
Confidence            55566665      59999987666633    2     46677888776654    333445 67899875  366533

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>PRK14279 chaperone protein DnaJ; Provisional

Probab=90.64  E-value=0.22  Score=44.24  Aligned_cols=38  Identities=24%  Similarity=0.727  Sum_probs=29.7

Q ss_pred             CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+           +|+.|+|..++.           ..+|+.|+-.|.+
T Consensus       190 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~g~v  238 (392)
T PRK14279        190 PKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSII-----------EDPCEECKGTGVT  238 (392)
T ss_pred             CCCCCCCcceEEEEEEecceEEEEecCCCCceeEEe-----------CCcCCCCCCCeEE
Confidence            4579999998765           799999998872           3568999887765

>TIGR02642 phage_xxxx uncharacterized phage protein

Probab=90.64  E-value=0.19  Score=40.40  Aligned_cols=27  Identities=22%  Similarity=0.795  Sum_probs=22.9

Q ss_pred             CCCCCCCCCcceEe-----CCCCCCCeeeeec
Q 047313          120 DCSCNGCGNIRFVL-----CSNCSGSCKVFRD  146 (174)
Q Consensus       120 ~~~C~~Cgg~r~v~-----C~~C~Gs~k~~~~  146 (174)
                      ...|..|+|.+++.     |..|+|+.++...
T Consensus        99 ~~~C~~C~G~G~~i~~~~~C~~C~G~G~v~~~  130 (186)
T TIGR02642        99 SCKCPRCRGTGLIQRRQRECDTCAGTGRFRPT  130 (186)
T ss_pred             CCcCCCCCCeeEEecCCCCCCCCCCccEEeee
Confidence            56899999999986     9999999877643

This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q.

>PRK14293 chaperone protein DnaJ; Provisional

Probab=90.59  E-value=0.21  Score=43.96  Aligned_cols=55  Identities=29%  Similarity=0.572  Sum_probs=37.1

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|..|+|+..++..-...-+ .....+|+.|+-.|-+   +|+.|.
T Consensus       143 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  207 (374)
T PRK14293        143 LETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACG  207 (374)
T ss_pred             cccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCC
Confidence            457888888664      569999999877644321000 1124789999988876   787773

>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues

Probab=90.53  E-value=2  Score=30.73  Aligned_cols=63  Identities=14%  Similarity=0.237  Sum_probs=35.7

Q ss_pred             EEEEeecCCCCCCChhH------HHHHHHHHh--------CCCcEEEEECCCCHH--HHHHH-HHhcCCCCCCcEEEECC
Q 047313           27 IFYTTSLRGIRKTFEDC------RTIRFLLQS--------FKVTFYERDVSLHME--FRDEL-WSSLSGRVIPPRLFIKG   89 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C------~~vr~iL~~--------~~v~~~e~Dv~~~~~--~~~el-~~~~g~~~~~P~vFI~G   89 (174)
                      +||++..     .|.-|      .....+|+.        ..+.|+.+||...++  ..+++ .++...---.|.|.|+|
T Consensus         1 ~VYGAe~-----~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~fYPlV~i~~   75 (93)
T PF07315_consen    1 VVYGAEV-----ICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDELFYPLVVIND   75 (93)
T ss_dssp             EEEE-SS-------GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS-SSEEEETT
T ss_pred             Ccccccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhcccccceEEECC
Confidence            4677653     46555      445555543        346689999975533  33444 34444355679999999


Q ss_pred             EEEec
Q 047313           90 RYIGG   94 (174)
Q Consensus        90 ~~IGG   94 (174)
                      ++||.
T Consensus        76 eiV~E   80 (93)
T PF07315_consen   76 EIVAE   80 (93)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99974

A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.

>PRK14282 chaperone protein DnaJ; Provisional

Probab=90.52  E-value=0.35  Score=42.46  Aligned_cols=39  Identities=26%  Similarity=0.671  Sum_probs=30.6

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      ...|..|.|.+.+               +|+.|+|+.++.           .-+|+.|+..|.+.
T Consensus       169 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~  222 (369)
T PRK14282        169 YVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIP-----------GEYCHECGGSGRIR  222 (369)
T ss_pred             CcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeC-----------CCCCCCCCCceeEE
Confidence            3479999999865               699999998772           35699999888653

>PRK14285 chaperone protein DnaJ; Provisional

Probab=90.51  E-value=0.22  Score=43.78  Aligned_cols=38  Identities=29%  Similarity=0.691  Sum_probs=28.5

Q ss_pred             CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+           +|+.|+|..++.           ..+|+.|+-.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  211 (365)
T PRK14285        163 PSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKII-----------SNPCKSCKGKGSL  211 (365)
T ss_pred             CccCCCccCceeEEecCceeEEeeecCCCCCccccc-----------CCCCCCCCCCCEE
Confidence            3468999998754           799999987762           3568888888765

>PRK14276 chaperone protein DnaJ; Provisional

Probab=90.46  E-value=0.25  Score=43.66  Aligned_cols=55  Identities=24%  Similarity=0.567  Sum_probs=35.8

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      ..|+.|+|+..+.......- -......|+.|+-.|-+   +|+.|.
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  210 (380)
T PRK14276        146 EATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCH  210 (380)
T ss_pred             cccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCC
Confidence            457999988874      67999999977764422100 00124678888877754   577773

>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.43  E-value=0.53  Score=38.00  Aligned_cols=73  Identities=16%  Similarity=0.141  Sum_probs=48.2

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEEC--CCC-HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV--SLH-MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv--~~~-~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      .+-++|+- |   |.+|.+  +||-.|.-++|+|+.+-|  ... .++-.++++..- ..+||.+.|||..|-..-.+.+
T Consensus         4 ~KpiLYSY-W---rSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNP-m~kVP~L~i~g~tl~eS~AII~   76 (217)
T KOG0868|consen    4 AKPILYSY-W---RSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINP-MEKVPTLVIDGLTLTESLAIIE   76 (217)
T ss_pred             ccchhhhh-h---cccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCc-hhhCCeEEECCEEeehHHHHHH
Confidence            35667763 4   346765  566666667777666655  333 445557888765 8899999999998876555544


Q ss_pred             hhh
Q 047313          101 LHE  103 (174)
Q Consensus       101 l~e  103 (174)
                      ..+
T Consensus        77 YLe   79 (217)
T KOG0868|consen   77 YLE   79 (217)
T ss_pred             HHH
Confidence            443

>PRK14280 chaperone protein DnaJ; Provisional

Probab=90.40  E-value=0.23  Score=43.76  Aligned_cols=38  Identities=32%  Similarity=0.856  Sum_probs=30.0

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+               +|+.|+|+.++.           ..+|+.|+-.|.+
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  212 (376)
T PRK14280        160 KETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEI-----------KEKCPTCHGKGKV  212 (376)
T ss_pred             CccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCcee-----------cCCCCCCCCceEE
Confidence            3579999998754               799999998762           3569999888765

>PRK14278 chaperone protein DnaJ; Provisional

Probab=90.25  E-value=0.29  Score=43.17  Aligned_cols=55  Identities=25%  Similarity=0.505  Sum_probs=35.5

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCC-CCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDD-DDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~-~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|+.|+|+..++...... ........|+.|+-.|-+   +|+.|.
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  203 (378)
T PRK14278        139 AVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECA  203 (378)
T ss_pred             eccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCC
Confidence            45799998876      46799999997765433110 001124678888888743   677773

>PRK10542 glutathionine S-transferase; Provisional

Probab=90.07  E-value=0.73  Score=35.90  Aligned_cols=66  Identities=14%  Similarity=0.132  Sum_probs=44.1

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVG  100 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~---~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~  100 (174)
                      .||++.       -+.+.+++-+|+.+||+|+.+.|....   ...+++.++.- ...+|.+.+ +|..|-....+.+
T Consensus         2 ~l~~~~-------~s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP-~g~vPvL~~~~g~~l~eS~aI~~   71 (201)
T PRK10542          2 KLFYKP-------GACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINP-KGQVPALLLDDGTLLTEGVAIMQ   71 (201)
T ss_pred             ceeecc-------cHHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCc-CCCCCeEEeCCCcEeecHHHHHH
Confidence            467654       235778889999999999888775432   12245666654 678999987 6666655544444

>PRK14301 chaperone protein DnaJ; Provisional

Probab=90.02  E-value=0.26  Score=43.40  Aligned_cols=37  Identities=35%  Similarity=0.883  Sum_probs=28.9

Q ss_pred             CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ..|..|.|.+.+           +|+.|+|+.++.           ..+|+.|+-.|.+
T Consensus       162 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  209 (373)
T PRK14301        162 ETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVI-----------THPCPKCKGSGIV  209 (373)
T ss_pred             cccCCccCeeEEEEEeeeEEEEEeCCCCCceeeec-----------CCCCCCCCCCcee
Confidence            469999998754           799999998772           3568999877765

>PRK14296 chaperone protein DnaJ; Provisional

Probab=90.01  E-value=0.24  Score=43.63  Aligned_cols=38  Identities=29%  Similarity=0.691  Sum_probs=27.4

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|+|.+.+               +|+.|+|..++.           ..+|+.|+-.|.+
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  218 (372)
T PRK14296        166 IHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKII-----------KNKCKNCKGKGKY  218 (372)
T ss_pred             CccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceee-----------cccccCCCCceEE
Confidence            3468888888754               788888887772           3558888877754

>PRK14286 chaperone protein DnaJ; Provisional

Probab=89.83  E-value=0.28  Score=43.16  Aligned_cols=38  Identities=29%  Similarity=0.776  Sum_probs=28.9

Q ss_pred             CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      ..|..|.|.+.+           +|+.|+|..++.           ..+|+.|+-.|.++
T Consensus       168 ~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~~  216 (372)
T PRK14286        168 TTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVI-----------SNPCKTCGGQGLQE  216 (372)
T ss_pred             ccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEe-----------cccCCCCCCCcEEe
Confidence            569999998765           799999988772           34688888877653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=89.74  E-value=0.31  Score=43.13  Aligned_cols=55  Identities=22%  Similarity=0.428  Sum_probs=34.6

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|..|+|+..++......-+ ......|+.|+-.|.+   +|+.|.
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~  219 (386)
T PRK14277        155 FEKCDVCKGSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCG  219 (386)
T ss_pred             eccCCCCCCCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCC
Confidence            45688888766      4679999999776543321000 0124578888888755   577773

>PRK14300 chaperone protein DnaJ; Provisional

Probab=89.74  E-value=0.28  Score=43.21  Aligned_cols=38  Identities=21%  Similarity=0.703  Sum_probs=27.3

Q ss_pred             CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+++           +|+.|+|..+..           ..+|+.|+-.|.+
T Consensus       162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  210 (372)
T PRK14300        162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQII-----------KNPCKKCHGMGRY  210 (372)
T ss_pred             CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEe-----------CCCCCCCCCceEE
Confidence            3468888888765           688888887662           3558888877764

>PRK10767 chaperone protein DnaJ; Provisional

Probab=89.72  E-value=0.32  Score=42.67  Aligned_cols=37  Identities=30%  Similarity=0.723  Sum_probs=28.8

Q ss_pred             CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ..|..|.|.+.+           +|+.|+|..+..           ..+|+.|+-.|.+
T Consensus       160 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  207 (371)
T PRK10767        160 KTCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKII-----------KDPCKKCHGQGRV  207 (371)
T ss_pred             ccCCCCCCeeEEEEeeceEEEEEeCCCCCCceeEC-----------CCCCCCCCCCceE
Confidence            469999998866           599999998762           3568888887765

>PRK14276 chaperone protein DnaJ; Provisional

Probab=89.72  E-value=0.27  Score=43.42  Aligned_cols=38  Identities=24%  Similarity=0.650  Sum_probs=29.9

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+               +|+.|+|+.++.           ..+|+.|+-.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~  215 (380)
T PRK14276        163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEI-----------KEPCQTCHGTGHE  215 (380)
T ss_pred             CccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccc-----------cCCCCCCCCceEE
Confidence            3579999998754               799999998772           3569999888765

>PRK14298 chaperone protein DnaJ; Provisional

Probab=89.67  E-value=0.29  Score=43.23  Aligned_cols=37  Identities=38%  Similarity=0.843  Sum_probs=29.6

Q ss_pred             CCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          121 CSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       121 ~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ..|..|.|.+.+               +|+.|+|..+..           ..+|+.|+-.|.+
T Consensus       159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  210 (377)
T PRK14298        159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVI-----------ESPCPVCSGTGKV  210 (377)
T ss_pred             CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCccc-----------CCCCCCCCCccEE
Confidence            579999999864               799999997762           3569999988765

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=89.54  E-value=2.4  Score=33.94  Aligned_cols=61  Identities=11%  Similarity=0.098  Sum_probs=40.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG~de   97 (174)
                      .|||+...     ..|+.|..+..+|+..     .+.|..+|+..       ....++ ...+|.|+  -+|+.++-+-.
T Consensus       104 ~VVV~Fya-----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~-------~~~~~~-i~~lPTlliyk~G~~v~~ivG  170 (192)
T cd02988         104 WVVVHLYK-----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQ-------CIPNYP-DKNLPTILVYRNGDIVKQFIG  170 (192)
T ss_pred             EEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH-------hHhhCC-CCCCCEEEEEECCEEEEEEeC
Confidence            45554433     3699999998888663     46788888742       124455 78899884  58886654443


Q ss_pred             h
Q 047313           98 V   98 (174)
Q Consensus        98 l   98 (174)
                      +
T Consensus       171 ~  171 (192)
T cd02988         171 L  171 (192)
T ss_pred             c
Confidence            3

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>PRK14284 chaperone protein DnaJ; Provisional

Probab=89.40  E-value=0.29  Score=43.37  Aligned_cols=38  Identities=24%  Similarity=0.606  Sum_probs=28.4

Q ss_pred             CCCCCCCCCcce-----------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRF-----------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~-----------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|+|.+.           .+|+.|+|..++.           ...|+.|+-.|.+
T Consensus       175 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  223 (391)
T PRK14284        175 IKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVI-----------TDPCSVCRGQGRI  223 (391)
T ss_pred             CeecCccCCeeEEEEEeceEEEEEECCCCCCCCccc-----------CCcCCCCCCccee
Confidence            346999999887           5799999986652           3568888877765

>PRK14277 chaperone protein DnaJ; Provisional

Probab=89.29  E-value=0.33  Score=42.98  Aligned_cols=38  Identities=26%  Similarity=0.685  Sum_probs=29.4

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+               +|+.|+|+.++.           ..+|+.|+-.|.+
T Consensus       172 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  224 (386)
T PRK14277        172 PVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKII-----------TDPCNKCGGTGRI  224 (386)
T ss_pred             CccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeec-----------cCCCCCCCCCcEE
Confidence            3469999999754               699999998772           3469999988865

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=89.25  E-value=1.2  Score=33.06  Aligned_cols=47  Identities=17%  Similarity=0.189  Sum_probs=30.3

Q ss_pred             ChhHHHHHHHHHh----C--CCcEEEEECCCCHHHH---HHHHHhcCCCC-CCcEEEE
Q 047313           40 FEDCRTIRFLLQS----F--KVTFYERDVSLHMEFR---DELWSSLSGRV-IPPRLFI   87 (174)
Q Consensus        40 c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~---~el~~~~g~~~-~~P~vFI   87 (174)
                      |+.|+.+.-+|+.    +  ++.|..+|+...+..+   .++....+ -. .+|.+.+
T Consensus        40 C~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~-I~~~iPT~~~   96 (119)
T cd02952          40 CPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK-LTTGVPTLLR   96 (119)
T ss_pred             CHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC-cccCCCEEEE
Confidence            9999987766643    3  4789999986543221   33444444 44 7999864

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>PRK14278 chaperone protein DnaJ; Provisional

Probab=89.20  E-value=0.32  Score=42.91  Aligned_cols=38  Identities=32%  Similarity=0.718  Sum_probs=30.1

Q ss_pred             CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.               .+|+.|+|..++.           ..+|+.|+-.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  208 (378)
T PRK14278        156 PVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVI-----------PDPCHECAGDGRV  208 (378)
T ss_pred             ceecCCccCceEEEEEEeccceeEEEEEECCCCCccceee-----------CCCCCCCCCceeE
Confidence            346999999875               4799999998872           3569999988865

>PRK14297 chaperone protein DnaJ; Provisional

Probab=89.07  E-value=0.35  Score=42.68  Aligned_cols=38  Identities=34%  Similarity=0.823  Sum_probs=29.8

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+               +|+.|+|..++.           ..+|+.|+-.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  217 (380)
T PRK14297        165 PKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVI-----------EDPCNKCHGKGKV  217 (380)
T ss_pred             CccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEc-----------CCCCCCCCCCeEE
Confidence            3569999999765               799999998762           3568999888764

>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]

Probab=88.97  E-value=0.19  Score=42.74  Aligned_cols=86  Identities=14%  Similarity=0.125  Sum_probs=61.2

Q ss_pred             chHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEE
Q 047313            9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus         9 ~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|...++...||..   .|+|.-+.      --..++|+..+..+||.|++.||+--  +..-..+.++.- ...+|++.
T Consensus        13 ~~~~~~ka~~~~e~---~vLyhhpy------sf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp-~gevPVl~   82 (325)
T KOG4420|consen   13 APEAASKAHWPRES---LVLYHHPY------SFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNP-GGEVPVLI   82 (325)
T ss_pred             CchhhcCCCCchhc---ceeeecCc------ccccceeeeehhhcccccceeeccCccccccCchheecCC-CCCCceEe
Confidence            34455655555554   88998763      35689999999999999999999642  222233444443 67899876


Q ss_pred             ECCEEEeccchhhhhhhc
Q 047313           87 IKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        87 I~G~~IGG~del~~l~e~  104 (174)
                      -+...|-++.++....|+
T Consensus        83 ~g~~II~d~tqIIdYvEr  100 (325)
T KOG4420|consen   83 HGDNIISDYTQIIDYVER  100 (325)
T ss_pred             cCCeecccHHHHHHHHHH
Confidence            666778899888888776

>PRK14288 chaperone protein DnaJ; Provisional

Probab=88.89  E-value=0.4  Score=42.20  Aligned_cols=38  Identities=24%  Similarity=0.656  Sum_probs=27.8

Q ss_pred             CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|+|.+.+           +|+.|+|..++.           .-.|+.|+-.|.+
T Consensus       156 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  204 (369)
T PRK14288        156 LETCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKII-----------KTPCQACKGKTYI  204 (369)
T ss_pred             CcCCCCCCCCcEEEEEeceEEEEEecCCCCCCceEc-----------cccCccCCCcceE
Confidence            3468889888865           588888887762           3458888877754

>PRK14292 chaperone protein DnaJ; Provisional

Probab=88.75  E-value=0.36  Score=42.38  Aligned_cols=54  Identities=26%  Similarity=0.582  Sum_probs=35.6

Q ss_pred             CCCCCCCCCcc-------eEeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCC
Q 047313          120 DCSCNGCGNIR-------FVLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFC  173 (174)
Q Consensus       120 ~~~C~~Cgg~r-------~v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C  173 (174)
                      ...|..|.|.+       ...|..|+|+..+...-...-+ ......|+.|+-.|..   +|+.|
T Consensus       139 ~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C  203 (371)
T PRK14292        139 LTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVC  203 (371)
T ss_pred             eecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCC
Confidence            45799998876       4679999999766533211000 0024688899888865   68777

>PRK14283 chaperone protein DnaJ; Provisional

Probab=88.67  E-value=0.38  Score=42.36  Aligned_cols=55  Identities=24%  Similarity=0.584  Sum_probs=36.9

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCC-CCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDD-DDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~-~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|..|+|+..++...... ........|+.|+-.|..   +|..|.
T Consensus       146 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  210 (378)
T PRK14283        146 TKKCPVCNGSRAEPGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCH  210 (378)
T ss_pred             eccCCCCCccccCCCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCC
Confidence            45688888765      46799999998776443210 001125689999988866   788873

>PRK14294 chaperone protein DnaJ; Provisional

Probab=88.56  E-value=0.4  Score=42.09  Aligned_cols=37  Identities=35%  Similarity=0.780  Sum_probs=28.6

Q ss_pred             CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ..|..|.|.+.+           +|+.|+|..+..           ...|+.|+-.|.+
T Consensus       162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  209 (366)
T PRK14294        162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVI-----------VSPCKTCHGQGRV  209 (366)
T ss_pred             ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeec-----------CcCCCCCCCceEe
Confidence            469999998754           699999998762           3568999877765

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=88.50  E-value=2.1  Score=30.35  Aligned_cols=54  Identities=11%  Similarity=0.156  Sum_probs=35.4

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhC-------CCcEEEEECCCC-HHHHHHHHHhcCCCCCCcEEE
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-------KVTFYERDVSLH-MEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-------~v~~~e~Dv~~~-~~~~~el~~~~g~~~~~P~vF   86 (174)
                      ..-++.|.++      .|+.|+.+...|+..       ++.+-.+|+..+ ..+   ..+..+ ...+|.++
T Consensus        22 k~vlv~f~a~------wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~---~~~~~~-v~~~Pti~   83 (109)
T cd02993          22 QSTLVVLYAP------WCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREF---AKEELQ-LKSFPTIL   83 (109)
T ss_pred             CCEEEEEECC------CCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhh---HHhhcC-CCcCCEEE
Confidence            4566777776      499999998877552       466777777652 221   223345 77899884

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=88.45  E-value=0.44  Score=46.22  Aligned_cols=52  Identities=25%  Similarity=0.421  Sum_probs=37.3

Q ss_pred             EEeccchhhhhhhcCchhHHhhcCCC-----CCCCCCCCCCCCcce------------EeCCCCCCCeee
Q 047313           91 YIGGADEVVGLHEQGKLKKLLEGIPR-----NLSDCSCNGCGNIRF------------VLCSNCSGSCKV  143 (174)
Q Consensus        91 ~IGG~del~~l~e~G~L~~~L~~~~~-----~~~~~~C~~Cgg~r~------------v~C~~C~Gs~k~  143 (174)
                      |.|=||++.+|+.+-...+ ..++.+     +...+.|++|+|.++            |||+.|+|.+..
T Consensus       697 Ytg~Fd~IR~lFA~tpeAK-~rGyk~grFSFNvkGGRCe~C~GdG~ikIeM~FLpdVyv~CevC~GkRYn  765 (935)
T COG0178         697 YTGVFDDIRELFAGTPEAK-ARGYKPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCHGKRYN  765 (935)
T ss_pred             hhcchHHHHHHHhcChHHH-HcCCCcccccccCCCcCCccccCCceEEEEeccCCCceeeCCCcCCcccc
Confidence            7778899988887644333 333333     335678999999886            789999998654

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=88.42  E-value=1.5  Score=33.17  Aligned_cols=60  Identities=12%  Similarity=0.118  Sum_probs=37.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-E--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-I--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I--~G~~IG   93 (174)
                      -||.|+++      .|+.|..+...|..    +  .+.|..+|+..+.  ...+.+.++ ...+|.++ +  +|+.++
T Consensus        23 vvV~F~A~------WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~-V~~iPt~v~~~~~G~~v~   91 (142)
T cd02950          23 TLVEFYAD------WCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYR-VDGIPHFVFLDREGNEEG   91 (142)
T ss_pred             EEEEEECC------cCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcC-CCCCCEEEEECCCCCEEE
Confidence            34455555      49999988877764    2  3567777875432  123444556 78899885 5  466443

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>PRK14295 chaperone protein DnaJ; Provisional

Probab=88.41  E-value=0.42  Score=42.38  Aligned_cols=38  Identities=21%  Similarity=0.511  Sum_probs=29.2

Q ss_pred             CCCCCCCCCcce-----------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRF-----------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~-----------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.           .+|+.|+|..++.           ..+|+.|+-.|.+
T Consensus       183 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~~  231 (389)
T PRK14295        183 PRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIA-----------DDPCLVCKGSGRA  231 (389)
T ss_pred             CcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEe-----------ccCCCCCCCCceE
Confidence            357999999875           4899999998772           3568888887765

>PRK14290 chaperone protein DnaJ; Provisional

Probab=88.26  E-value=0.47  Score=41.65  Aligned_cols=38  Identities=29%  Similarity=0.755  Sum_probs=30.2

Q ss_pred             CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|+|.+.               .+|+.|+|..+.           ...+|+.|+-.|.+
T Consensus       165 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~-----------~~~~C~~C~G~g~v  217 (365)
T PRK14290        165 LITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRI-----------PEEKCPRCNGTGTV  217 (365)
T ss_pred             CccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeE-----------ccCCCCCCCCceeE
Confidence            347999999884               489999999876           24679999888765

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=88.19  E-value=2.2  Score=35.28  Aligned_cols=60  Identities=18%  Similarity=0.187  Sum_probs=43.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCc--EEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE-ecc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT--FYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI-GGA   95 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~--~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I-GG~   95 (174)
                      .|.||+-      +||..|...-+.|+++|..  +..+|-...+..  .++.  + ..++|.||+||+.+ +|.
T Consensus        12 ~VkI~~H------ktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f~--~~~~--~-V~SvP~Vf~DGel~~~dp   74 (265)
T COG5494          12 EVKIFTH------KTCVSSYMLFEYLENKGLLGKVKIIDAELPPFL--AFEK--G-VISVPSVFIDGELVYADP   74 (265)
T ss_pred             EEEEEEe------cchHHHHHHHHHHHhcCCCCCceEEEcCCChHH--Hhhc--c-eeecceEEEcCeEEEcCC
Confidence            5778886      4899999999999998874  666666544332  1221  2 67899999999975 443

>PRK14281 chaperone protein DnaJ; Provisional

Probab=87.89  E-value=0.5  Score=41.99  Aligned_cols=55  Identities=27%  Similarity=0.602  Sum_probs=35.2

Q ss_pred             CCCCCCCCCcce-----EeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.     ..|..|+|+..+.......-+ ......|+.|+-.|.+   +|+.|.
T Consensus       163 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~  226 (397)
T PRK14281        163 QVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACY  226 (397)
T ss_pred             eecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCC
Confidence            456888888765     569999999766543211000 0124689999888854   677773

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=87.81  E-value=0.53  Score=42.29  Aligned_cols=55  Identities=27%  Similarity=0.535  Sum_probs=34.4

Q ss_pred             CCCCCCCCCcce-----EeCCCCCCCeeeeecCCCCC-CccccccCcccccCccc-----cCCCCC
Q 047313          120 DCSCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENGLV-----KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenGl~-----~C~~C~  174 (174)
                      ...|..|.|.+.     ..|+.|+|+...+....... .......|+.|+-.|-+     +|+.|.
T Consensus       150 ~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~  215 (421)
T PTZ00037        150 DVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCS  215 (421)
T ss_pred             cccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCC
Confidence            456888888774     57999999976443221100 00124578888888865     588873

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=87.80  E-value=0.4  Score=43.07  Aligned_cols=41  Identities=24%  Similarity=0.700  Sum_probs=30.0

Q ss_pred             CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      ...|..|+|.+.               .+|+.|+|+.+++..         ..+|+.|+-.|.++
T Consensus       166 ~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~---------~~~C~~C~G~g~v~  221 (421)
T PTZ00037        166 FVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPE---------SKKCKNCSGKGVKK  221 (421)
T ss_pred             CccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccc---------cccCCcCCCcceee
Confidence            346999998874               389999999877431         25689998887654

>PRK14289 chaperone protein DnaJ; Provisional

Probab=87.67  E-value=0.64  Score=41.06  Aligned_cols=38  Identities=29%  Similarity=0.812  Sum_probs=29.6

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+               +|+.|+|..++           ...+|+.|+-.|.+
T Consensus       171 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~-----------~~~~C~~C~G~g~v  223 (386)
T PRK14289        171 SETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI-----------IKKKCKKCGGEGIV  223 (386)
T ss_pred             CCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccc-----------cCcCCCCCCCCcEE
Confidence            4579999998765               79999999765           24679999888765

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=87.63  E-value=0.5  Score=38.10  Aligned_cols=62  Identities=13%  Similarity=0.056  Sum_probs=45.6

Q ss_pred             CChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhhhh
Q 047313           39 TFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGLHE  103 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l~e  103 (174)
                      .||+|.+||+++--++|+++..-+..|.+.  .=-+..| +.+||.+. =+|++++-.=++.....
T Consensus         8 HCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG-~KqVPiL~Kedg~~m~ESlDIV~y~d   70 (215)
T COG2999           8 HCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIG-QKQVPILQKEDGRAMPESLDIVHYVD   70 (215)
T ss_pred             cChHHHHHHHHhhccCCChhhheeccCccc--Chhhhhc-ccccceEEccccccchhhhHHHHHHH
Confidence            799999999999999999988777554331  1223456 89999986 47888877656555543

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=87.47  E-value=3.5  Score=30.70  Aligned_cols=65  Identities=8%  Similarity=-0.020  Sum_probs=39.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHH-HHHh--------CCCcEEEEECCCCHHHHHHHHH----hcCCCCCCcEEE-E--C
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRF-LLQS--------FKVTFYERDVSLHMEFRDELWS----SLSGRVIPPRLF-I--K   88 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~-iL~~--------~~v~~~e~Dv~~~~~~~~el~~----~~g~~~~~P~vF-I--~   88 (174)
                      .|+|+..+     ..|++|+.+.. .+..        .++.+..+|+...++..+.+.+    +.| ...+|.+. +  +
T Consensus        17 pVll~f~a-----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~-~~G~Pt~vfl~~~   90 (124)
T cd02955          17 PIFLSIGY-----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTG-QGGWPLNVFLTPD   90 (124)
T ss_pred             eEEEEEcc-----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcC-CCCCCEEEEECCC
Confidence            46665544     26999998864 3332        2455677888776665544433    345 77889884 4  5


Q ss_pred             CEEEecc
Q 047313           89 GRYIGGA   95 (174)
Q Consensus        89 G~~IGG~   95 (174)
                      |+.|-+.
T Consensus        91 G~~~~~~   97 (124)
T cd02955          91 LKPFFGG   97 (124)
T ss_pred             CCEEeee
Confidence            7777443

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF13901 DUF4206: Domain of unknown function (DUF4206)

Probab=87.45  E-value=0.074  Score=43.05  Aligned_cols=86  Identities=23%  Similarity=0.486  Sum_probs=60.5

Q ss_pred             CCcEEEECCEEEeccchhhhhhhcCchhHHhhcCCCCC--CCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCcccccc
Q 047313           81 IPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNL--SDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIR  158 (174)
Q Consensus        81 ~~P~vFI~G~~IGG~del~~l~e~G~L~~~L~~~~~~~--~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~r  158 (174)
                      ..|.-+++.-++=...||.++ .+|.|.+.|+.+-...  .-..|..|.+.+| .|..|+.+ .+..--...    ...+
T Consensus       102 ~~~~hl~~~~~~YSl~DL~~v-~~G~L~~~L~~l~~~~~~HV~~C~lC~~kGf-iCe~C~~~-~~IfPF~~~----~~~~  174 (202)
T PF13901_consen  102 QPRDHLLEDPHLYSLADLVQV-KSGQLLPQLEKLVQFAEKHVYSCELCQQKGF-ICEICNSD-DIIFPFQID----TTVR  174 (202)
T ss_pred             cchhhhhhCCceEcHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhHHHHhCCC-CCccCCCC-CCCCCCCCC----Ceee
Confidence            556667777778888888888 5889999887654433  2338999999998 79999988 443333321    2789


Q ss_pred             CcccccCcc------ccCCCC
Q 047313          159 CPECNENGL------VKCPFC  173 (174)
Q Consensus       159 C~~CnenGl------~~C~~C  173 (174)
                      |+.|+.-=-      ..||.|
T Consensus       175 C~~C~~v~H~~C~~~~~CpkC  195 (202)
T PF13901_consen  175 CPKCKSVFHKSCFRKKSCPKC  195 (202)
T ss_pred             CCcCccccchhhcCCCCCCCc
Confidence            998875321      456766

>PRK14281 chaperone protein DnaJ; Provisional

Probab=87.42  E-value=0.5  Score=41.98  Aligned_cols=38  Identities=32%  Similarity=0.770  Sum_probs=27.6

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|+|.+.+               +|+.|+|..++.           .-+|+.|+-.|.+
T Consensus       179 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  231 (397)
T PRK14281        179 TETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVV-----------KDRCPACYGEGIK  231 (397)
T ss_pred             CccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeee-----------CCCCCCCCCCccE
Confidence            3468888888743               688888887762           2458888877765

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=87.35  E-value=2.5  Score=29.55  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=29.7

Q ss_pred             CChhHHHHHHHHHh----C---C--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECC
Q 047313           39 TFEDCRTIRFLLQS----F---K--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKG   89 (174)
Q Consensus        39 ~c~~C~~vr~iL~~----~---~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G   89 (174)
                      .|+.|++....|+.    +   +  +.+..+|+...+.    +.+..+ -.++|+++ ++|
T Consensus        26 wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-I~~~Pt~~l~~~   81 (104)
T cd03000          26 WCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEFG-VRGYPTIKLLKG   81 (104)
T ss_pred             CCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhcC-CccccEEEEEcC
Confidence            59999987766643    2   3  5566677765543    444455 77899984 444

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=87.24  E-value=1.6  Score=31.96  Aligned_cols=57  Identities=12%  Similarity=0.116  Sum_probs=38.1

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGR   90 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~   90 (174)
                      --+|.|..+|      |+.|+.+...|+..      .+.+-.+|+..+....   .+..+ ..++|+|  |.+|+
T Consensus        31 ~vlV~FyA~W------C~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~---~~~~~-I~~~PTl~lf~~g~   95 (113)
T cd03006          31 VSLVMYYAPW------DAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKC---RKQKH-FFYFPVIHLYYRSR   95 (113)
T ss_pred             EEEEEEECCC------CHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHH---HHhcC-CcccCEEEEEECCc
Confidence            3566777775      99999998888653      2567888887666432   22334 5678877  55665

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=87.21  E-value=1.7  Score=29.81  Aligned_cols=59  Identities=12%  Similarity=0.147  Sum_probs=35.7

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh--------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS--------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRY   91 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~--------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~   91 (174)
                      .-++.|+++      .|+.|+.+...|+.        ..+.+-.+|+..+  .-..+.+..+ ...+|.++  -+|+.
T Consensus        19 ~~~v~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~~-i~~~Pt~~~~~~g~~   87 (104)
T cd02997          19 HVLVMFYAP------WCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP--EHDALKEEYN-VKGFPTFKYFENGKF   87 (104)
T ss_pred             CEEEEEECC------CCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC--ccHHHHHhCC-CccccEEEEEeCCCe
Confidence            446666666      59999988655532        2255677787662  1123445555 67889874  35553

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=87.15  E-value=2.6  Score=28.76  Aligned_cols=53  Identities=11%  Similarity=0.234  Sum_probs=34.0

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhC--------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF--------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~--------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      ..-+|.|.++      .|+.|+.+...|+..        .+.+..+|.+.+     ++....+ ...+|.+++
T Consensus        19 ~~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~-~~~~Pt~~~   79 (104)
T cd02995          19 KDVLVEFYAP------WCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-----DVPSEFV-VDGFPTILF   79 (104)
T ss_pred             CcEEEEEECC------CCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-----hhhhhcc-CCCCCEEEE
Confidence            4456667776      499999987777542        255667777653     2333334 578998864

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=86.65  E-value=0.65  Score=40.42  Aligned_cols=39  Identities=31%  Similarity=0.748  Sum_probs=30.0

Q ss_pred             CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      ...|..|.|.+.               .+|+.|+|+.+..           .-.|+.|+-.|.+.
T Consensus       160 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v~  213 (354)
T TIGR02349       160 PKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKII-----------KEPCSTCKGKGRVK  213 (354)
T ss_pred             CccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceec-----------CCCCCCCCCCcEec
Confidence            456999999864               4799999998763           24699999888653

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PTZ00062 glutaredoxin; Provisional

Probab=86.51  E-value=4.9  Score=32.61  Aligned_cols=70  Identities=7%  Similarity=0.101  Sum_probs=44.4

Q ss_pred             CcchHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCC
Q 047313            7 ESPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVI   81 (174)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~   81 (174)
                      +....++|.+.-. .+.+.+|+|.++     .-|+.|+.+...|..+     .+.|..+|..            .+ -..
T Consensus         2 ~~~~~ee~~~~i~-~~~g~~vl~f~a-----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d------------~~-V~~   62 (204)
T PTZ00062          2 NFIKKEEKDKLIE-SNTGKLVLYVKS-----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA------------DA-NNE   62 (204)
T ss_pred             CCCCHHHHHHHHh-cCCCcEEEEEeC-----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc------------cC-ccc
Confidence            4455566666642 123667777754     2499999999888764     3555555542            44 778


Q ss_pred             CcEE--EECCEEEecc
Q 047313           82 PPRL--FIKGRYIGGA   95 (174)
Q Consensus        82 ~P~v--FI~G~~IGG~   95 (174)
                      +|.+  |-+|+.|+.+
T Consensus        63 vPtfv~~~~g~~i~r~   78 (204)
T PTZ00062         63 YGVFEFYQNSQLINSL   78 (204)
T ss_pred             ceEEEEEECCEEEeee
Confidence            9965  3588877654

>PRK14287 chaperone protein DnaJ; Provisional

Probab=85.43  E-value=0.64  Score=40.91  Aligned_cols=38  Identities=29%  Similarity=0.842  Sum_probs=29.5

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+               +|+.|+|+.++.           ...|+.|+-.|.+
T Consensus       155 ~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  207 (371)
T PRK14287        155 PETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKII-----------KQKCATCGGKGKV  207 (371)
T ss_pred             CcccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccc-----------cccCCCCCCeeEE
Confidence            3569999999754               699999998762           3568999877765

>PF13728 TraF: F plasmid transfer operon protein

Probab=85.19  E-value=3.9  Score=33.30  Aligned_cols=59  Identities=15%  Similarity=0.217  Sum_probs=40.1

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCC--HH-----HHHHHHHhcCCCCCCcEEEE
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDVSLH--ME-----FRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv~~~--~~-----~~~el~~~~g~~~~~P~vFI   87 (174)
                      ....+++|..+      +|++|+...-+|+    .+|+.+..++++..  +.     .-..+.+.+| ...+|.+|+
T Consensus       120 ~~~gL~~F~~~------~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~-v~~~Pal~L  189 (215)
T PF13728_consen  120 QKYGLFFFYRS------DCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLG-VKVTPALFL  189 (215)
T ss_pred             hCeEEEEEEcC------CCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcC-CCcCCEEEE
Confidence            44567777776      7999998877775    47898888888521  00     0122444556 789999986

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=84.82  E-value=0.62  Score=27.49  Aligned_cols=32  Identities=28%  Similarity=0.696  Sum_probs=21.7

Q ss_pred             eEeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313          131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE  164 (174)
Q Consensus       131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne  164 (174)
                      .+.|+.|+..-++-.+.-...  ...+||+.|..
T Consensus         2 ~i~CP~C~~~f~v~~~~l~~~--~~~vrC~~C~~   33 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDKLPAG--GRKVRCPKCGH   33 (37)
T ss_pred             EEECCCCCceEEcCHHHcccC--CcEEECCCCCc
Confidence            367999999987765431111  13799999975

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=0.97  Score=40.06  Aligned_cols=38  Identities=26%  Similarity=0.675  Sum_probs=30.2

Q ss_pred             CCCCCCCCCcce-------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRF-------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~-------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.             ++|+.|+|+.++.           .-.|+.|+-.|.+
T Consensus       159 ~~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i-----------~~pC~~C~G~G~v  209 (371)
T COG0484         159 PKTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKII-----------KDPCGKCKGKGRV  209 (371)
T ss_pred             CCcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeEC-----------CCCCCCCCCCCeE
Confidence            448999999884             5799999998874           3578888877764

>PRK14291 chaperone protein DnaJ; Provisional

Probab=84.58  E-value=0.87  Score=40.21  Aligned_cols=37  Identities=32%  Similarity=0.812  Sum_probs=26.6

Q ss_pred             CCCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+           +|+.|+|...+            ...|+.|+-.|.+
T Consensus       173 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~------------~~~C~~C~G~g~v  220 (382)
T PRK14291        173 EKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGVL------------REPCSKCNGRGLV  220 (382)
T ss_pred             CccCCCCCCceEEEEecceEEEEecCCCCCCceEE------------ccCCCCCCCCceE
Confidence            3468889988765           68888888742            2458888776654

>PRK14293 chaperone protein DnaJ; Provisional

Probab=84.53  E-value=0.93  Score=39.91  Aligned_cols=37  Identities=30%  Similarity=0.800  Sum_probs=28.2

Q ss_pred             CCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          121 CSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       121 ~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ..|..|.|.+.+               +|+.|+|..++.           ..+|..|+-.|.+
T Consensus       161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  212 (374)
T PRK14293        161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVI-----------EDPCDACGGQGVK  212 (374)
T ss_pred             eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEe-----------ccCCCCCCCCccc
Confidence            469999998864               699999998762           3568888877764

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=84.42  E-value=3.8  Score=29.57  Aligned_cols=55  Identities=15%  Similarity=0.077  Sum_probs=33.8

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC---------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF---------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~---------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      .-++.|+++      .|+.|......++..         .+.+-.+|.+.+.  -.++.+..+ ...+|++++
T Consensus        21 ~vvV~f~a~------wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~-i~~~Pt~~l   84 (114)
T cd02992          21 AWLVEFYAS------WCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFG-VTGYPTLRY   84 (114)
T ss_pred             eEEEEEECC------CCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCC-CCCCCEEEE
Confidence            456666666      499999887776542         1445555653322  234555556 678998864

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>PRK14283 chaperone protein DnaJ; Provisional

Probab=84.37  E-value=1.3  Score=39.11  Aligned_cols=38  Identities=32%  Similarity=0.819  Sum_probs=28.4

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|.|.+.+               +|+.|+|..+..           ...|..|+-.|.+
T Consensus       163 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  215 (378)
T PRK14283        163 VKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIV-----------EKPCSNCHGKGVV  215 (378)
T ss_pred             CccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceec-----------CCCCCCCCCceee
Confidence            4469999998765               599999987762           3568888877764

>PLN03165 chaperone protein dnaJ-related; Provisional

Probab=84.09  E-value=0.88  Score=33.64  Aligned_cols=25  Identities=24%  Similarity=0.519  Sum_probs=18.9

Q ss_pred             CCCCCCCCCcceEeCCCCCCCeeee
Q 047313          120 DCSCNGCGNIRFVLCSNCSGSCKVF  144 (174)
Q Consensus       120 ~~~C~~Cgg~r~v~C~~C~Gs~k~~  144 (174)
                      ...|..|.|.+.++|..|+|+..+.
T Consensus        75 ~~~C~~C~G~Gk~~C~~C~G~G~~~   99 (111)
T PLN03165         75 VSKCINCDGAGSLTCTTCQGSGIQP   99 (111)
T ss_pred             EEECCCCCCcceeeCCCCCCCEEEe
Confidence            4568888888888888888886543

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=83.93  E-value=2.4  Score=31.42  Aligned_cols=61  Identities=16%  Similarity=0.247  Sum_probs=40.7

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcE--EEECCEEE
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----K-VTFYERDVSLHMEFRDELWSSLSGRVIPPR--LFIKGRYI   92 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~--vFI~G~~I   92 (174)
                      +...|||-.+.     .-|+.|..+-.+|++.     + +.|-.+|+...+++.+++    + -...|.  +|-+|+||
T Consensus        13 ~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y----~-I~amPtfvffkngkh~   81 (114)
T cd02986          13 AEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYF----D-ISYIPSTIFFFNGQHM   81 (114)
T ss_pred             CCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhc----C-ceeCcEEEEEECCcEE
Confidence            44555555543     3599999998888763     3 678899998777755543    3 333554  46689887

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=83.61  E-value=1  Score=39.54  Aligned_cols=38  Identities=24%  Similarity=0.614  Sum_probs=29.5

Q ss_pred             CCCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          120 DCSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       120 ~~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ...|..|+|.+.+               +|..|+|..+..           ...|+.|+-.|.+
T Consensus       157 ~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~g~v  209 (371)
T PRK14292        157 PKTCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQII-----------TDPCTVCRGRGRT  209 (371)
T ss_pred             CccCCCCCCccEEEEEEeccCceEEEeeecCCCcccceec-----------CCCCCCCCCceEE
Confidence            4569999998765               599999997762           4679999887764

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=83.40  E-value=4.3  Score=32.46  Aligned_cols=57  Identities=16%  Similarity=0.303  Sum_probs=37.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHH----HHHHHhCCCcEEEEECCCCH-----H----HHHHHHHhcCC-CCCCcEEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTI----RFLLQSFKVTFYERDVSLHM-----E----FRDELWSSLSG-RVIPPRLFI   87 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~v----r~iL~~~~v~~~e~Dv~~~~-----~----~~~el~~~~g~-~~~~P~vFI   87 (174)
                      ++|+|..+|      ||+|++.    +++-+++++.+.-+.+..+.     .    -...+.+.+|. ...+|..|+
T Consensus        72 ~lV~Fwasw------Cp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfL  142 (181)
T PRK13728         72 KVVLFMQGH------CPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFL  142 (181)
T ss_pred             eEEEEECCC------CHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEE
Confidence            488888885      9999987    55666678887777664321     1    12334445552 258999985

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=83.12  E-value=2.9  Score=34.00  Aligned_cols=65  Identities=25%  Similarity=0.348  Sum_probs=33.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhC----CCc---E--------EEEECCCCHHH---HHHHHHhcCC-CCCCcEEE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF----KVT---F--------YERDVSLHMEF---RDELWSSLSG-RVIPPRLF   86 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v~---~--------~e~Dv~~~~~~---~~el~~~~g~-~~~~P~vF   86 (174)
                      |-|||+-      +|.-|=-|-++|..+    .|-   |        -+.|-...+++   +..+.+..|. ..=.||++
T Consensus         2 VELFTSQ------GCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~v   75 (202)
T PF06764_consen    2 VELFTSQ------GCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVV   75 (202)
T ss_dssp             EEEEE-T------T-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEE
T ss_pred             eeEecCC------CCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEE
Confidence            6789986      999998888888763    221   1        13344444443   3334444442 33459999


Q ss_pred             ECCE-EEeccc
Q 047313           87 IKGR-YIGGAD   96 (174)
Q Consensus        87 I~G~-~IGG~d   96 (174)
                      |||+ +..|.+
T Consensus        76 VnG~~~~~g~~   86 (202)
T PF06764_consen   76 VNGREHRVGSD   86 (202)
T ss_dssp             ETTTEEEETT-
T ss_pred             ECCeeeeeccC
Confidence            9995 456655

The function of this family is unknown.; PDB: 2AXO_A.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=82.72  E-value=4.3  Score=33.37  Aligned_cols=57  Identities=16%  Similarity=0.217  Sum_probs=38.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~I   92 (174)
                      -+|.|+++      .|+.|+.+...++.    +  .+.+..+|+..++.    +.+..+ -..+|.++  -+|+.+
T Consensus        55 vlV~FyAp------WC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~----l~~~~~-I~~~PTl~~f~~G~~v  119 (224)
T PTZ00443         55 WFVKFYAP------WCSHCRKMAPAWERLAKALKGQVNVADLDATRALN----LAKRFA-IKGYPTLLLFDKGKMY  119 (224)
T ss_pred             EEEEEECC------CChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHH----HHHHcC-CCcCCEEEEEECCEEE
Confidence            45666666      49999998887755    2  25567777766543    445556 77889874  477654

>TIGR02740 TraF-like TraF-like protein

Probab=82.66  E-value=3.9  Score=34.46  Aligned_cols=59  Identities=15%  Similarity=0.176  Sum_probs=38.4

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCCHH-------HHHHHHHhcCCCCCCcEEEE
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDVSLHME-------FRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv~~~~~-------~~~el~~~~g~~~~~P~vFI   87 (174)
                      +...++.|..+      .|+.|+...-+|+    .+++.+..+++..+..       .-..+.+.+| ...+|.+|+
T Consensus       166 ~k~~Lv~F~As------wCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g-V~~vPtl~L  235 (271)
T TIGR02740       166 KKSGLFFFFKS------DCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLK-IRTVPAVFL  235 (271)
T ss_pred             CCeEEEEEECC------CCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcC-CCcCCeEEE
Confidence            44556666666      5999998877775    4677787777754321       0122445566 789999974

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=82.31  E-value=4.3  Score=33.05  Aligned_cols=70  Identities=10%  Similarity=0.005  Sum_probs=52.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEEC--CCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDV--SLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv--~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++++|+..      .-+.+.++...++..|+.|+.+.|  ...+....++.++.- ..++|.+.-+|-.+-....|...
T Consensus         2 ~~~ly~~~------~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP-~~kVP~l~d~~~~l~eS~AI~~Y   73 (226)
T KOG0867|consen    2 KLKLYGHL------GSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNP-LGKVPALEDGGLTLWESHAILRY   73 (226)
T ss_pred             CceEeecC------CCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCc-CCCCCeEecCCeEEeeHHHHHHH
Confidence            46789887      458899999999999999988854  344455566666654 77999999998877766555433

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=82.07  E-value=9  Score=27.67  Aligned_cols=57  Identities=21%  Similarity=0.169  Sum_probs=32.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-------C--CCcEEEEECCCCHH-H-------------------HHHHHHh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-------F--KVTFYERDVSLHME-F-------------------RDELWSS   75 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~--~v~~~e~Dv~~~~~-~-------------------~~el~~~   75 (174)
                      .|+||..+.     .|+.|++....|.+       .  ++.+..+++..+.+ +                   ...+.+.
T Consensus        20 ~vll~Fwa~-----wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (131)
T cd03009          20 TVGLYFSAS-----WCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRT   94 (131)
T ss_pred             EEEEEEECC-----CChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHH
Confidence            355555442     59999987666542       1  45566666654432 1                   1344445


Q ss_pred             cCCCCCCcEEEE
Q 047313           76 LSGRVIPPRLFI   87 (174)
Q Consensus        76 ~g~~~~~P~vFI   87 (174)
                      ++ ...+|.+||
T Consensus        95 ~~-v~~~P~~~l  105 (131)
T cd03009          95 FK-IEGIPTLII  105 (131)
T ss_pred             cC-CCCCCEEEE
Confidence            55 677898864

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>TIGR00595 priA primosomal protein N'

Probab=81.96  E-value=1.2  Score=40.73  Aligned_cols=45  Identities=31%  Similarity=0.795  Sum_probs=32.8

Q ss_pred             CCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcc--ccCCCCC
Q 047313          121 CSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGL--VKCPFCS  174 (174)
Q Consensus       121 ~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl--~~C~~C~  174 (174)
                      -.|..||-.  +.|+.|+++-..+. +..      .++|+.|+-.--  ..||.|.
T Consensus       214 ~~C~~Cg~~--~~C~~C~~~l~~h~-~~~------~l~Ch~Cg~~~~~~~~Cp~C~  260 (505)
T TIGR00595       214 LLCRSCGYI--LCCPNCDVSLTYHK-KEG------KLRCHYCGYQEPIPKTCPQCG  260 (505)
T ss_pred             eEhhhCcCc--cCCCCCCCceEEec-CCC------eEEcCCCcCcCCCCCCCCCCC
Confidence            369999964  67999999855443 222      689999986653  5799984

All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=81.82  E-value=4.9  Score=32.78  Aligned_cols=57  Identities=18%  Similarity=0.239  Sum_probs=44.8

Q ss_pred             ChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           40 FEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        40 c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      ...++.+|.+|.-.+++|++.-++.... ..+++..+. -.++|.+-|||..|.-.-.+
T Consensus        12 RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~p-fgqlP~l~vDg~~i~QS~AI   68 (206)
T KOG1695|consen   12 RGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMP-FGQLPVLEVDGKKLVQSRAI   68 (206)
T ss_pred             chhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCC-CCCCCEEeECCEeeccHHHH
Confidence            4789999999999999999999987654 445555544 67999999999987654444

>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.78  E-value=6.3  Score=28.49  Aligned_cols=68  Identities=9%  Similarity=0.216  Sum_probs=43.2

Q ss_pred             CCCcEEEEEeecCCCCCCChhH------HHHHHHHHh--------CCCcEEEEECCCC--HHHHHHHHHhc-CCCCCCcE
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDC------RTIRFLLQS--------FKVTFYERDVSLH--MEFRDELWSSL-SGRVIPPR   84 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C------~~vr~iL~~--------~~v~~~e~Dv~~~--~~~~~el~~~~-g~~~~~P~   84 (174)
                      ..-+++||+...     .|..|      .....+|+.        +.+.|+.+||..+  ..+..++.+.. ....-.|.
T Consensus         3 ~~~~l~VyGae~-----iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey~YPl   77 (106)
T COG4837           3 NEAKLVVYGAEV-----ICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEYFYPL   77 (106)
T ss_pred             ceeEEEEecchh-----hhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccccceE
Confidence            445788998763     46555      344555543        3455899999654  33444444433 33556799


Q ss_pred             EEECCEEEec
Q 047313           85 LFIKGRYIGG   94 (174)
Q Consensus        85 vFI~G~~IGG   94 (174)
                      |.|++++|+.
T Consensus        78 ivvedeiVae   87 (106)
T COG4837          78 IVVEDEIVAE   87 (106)
T ss_pred             EEEcceEeec
Confidence            9999999963

>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function

Probab=81.57  E-value=0.81  Score=28.63  Aligned_cols=39  Identities=26%  Similarity=0.537  Sum_probs=23.0

Q ss_pred             CCcceEeCCCCCCCeeeeecCCCCCCccccccCcccccC
Q 047313          127 GNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNEN  165 (174)
Q Consensus       127 gg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cnen  165 (174)
                      ||.-||.|..|.--=.......-.......+||.+|.|-
T Consensus         2 GGAPFv~C~~C~~lLqlP~~~~~~~k~~~klrCGaCs~v   40 (46)
T PF11331_consen    2 GGAPFVVCSSCFELLQLPAKFSLSKKNQQKLRCGACSEV   40 (46)
T ss_pred             CCCCEeECccHHHHHcCCCccCCCccceeEEeCCCCcee
Confidence            688899999997542222111110001237999999874

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=80.91  E-value=6.5  Score=26.92  Aligned_cols=52  Identities=13%  Similarity=0.140  Sum_probs=34.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCC--CCcEEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRV--IPPRLFI   87 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~--~~P~vFI   87 (174)
                      -+++|.++      .|+.|..++..|+.    +  .+.|..+|+...+.    +.+..| -.  .+|+|.+
T Consensus        15 ~~~~f~~~------~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~-i~~~~~P~~~~   74 (103)
T cd02982          15 LLVLFYNK------DDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFG-LKEEDLPVIAI   74 (103)
T ss_pred             EEEEEEcC------ChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcC-CChhhCCEEEE
Confidence            45555554      58899999998876    2  36788888865444    344445 44  8999864

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A

Probab=80.85  E-value=2.6  Score=31.36  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=17.4

Q ss_pred             CCCCcEEEECCEEEeccchhhhh
Q 047313           79 RVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        79 ~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      -..+|.+||||+++.|..++.+|
T Consensus       134 i~~tPt~~inG~~~~~~~~~~~l  156 (162)
T PF13462_consen  134 ITGTPTFFINGKYVVGPYTIEEL  156 (162)
T ss_dssp             -SSSSEEEETTCEEETTTSHHHH
T ss_pred             CccccEEEECCEEeCCCCCHHHH
Confidence            67899999999999776555443

...

>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway

Probab=80.56  E-value=2.4  Score=32.57  Aligned_cols=57  Identities=12%  Similarity=0.075  Sum_probs=34.3

Q ss_pred             HHHHHHHhCCCcEEEEE-CCCCHHHHHHHHHh------cCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           45 TIRFLLQSFKVTFYERD-VSLHMEFRDELWSS------LSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        45 ~vr~iL~~~~v~~~e~D-v~~~~~~~~el~~~------~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .+..++.+.|++.++.. ...+.++++.+.+-      .| ...+|.++|||+++-|.+.+..+.
T Consensus       125 ~l~~~a~~~Gld~~~~~~~~~~~~~~~~l~~~~~~a~~~g-i~gvPtfvv~g~~~~G~~~l~~~~  188 (192)
T cd03022         125 VLAAVAAAAGLDADELLAAADDPAVKAALRANTEEAIARG-VFGVPTFVVDGEMFWGQDRLDMLE  188 (192)
T ss_pred             HHHHHHHHcCCCHHHHHHHcCCHHHHHHHHHHHHHHHHcC-CCcCCeEEECCeeecccccHHHHH
Confidence            34455555555432211 12334444444332      24 789999999999999998876543

It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=80.53  E-value=7.1  Score=36.37  Aligned_cols=48  Identities=13%  Similarity=0.142  Sum_probs=33.3

Q ss_pred             CChhHHHHHHHH-------Hh-CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           39 TFEDCRTIRFLL-------QS-FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        39 ~c~~C~~vr~iL-------~~-~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      .|+.|+......       +. .++.+..+|++.+.....++.+..+ ...+|.+++
T Consensus       485 WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~-v~g~Pt~~~  540 (571)
T PRK00293        485 WCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN-VLGLPTILF  540 (571)
T ss_pred             cCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC-CCCCCEEEE
Confidence            599999875542       11 3577888999876544456666667 788999854

>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology []

Probab=80.40  E-value=0.44  Score=35.90  Aligned_cols=46  Identities=17%  Similarity=0.558  Sum_probs=31.3

Q ss_pred             hhcCchhHHhhcCCCCCCCCCCCCCCCcceEeCCCCCCCeeeeecCCCCCCccccccCccccc
Q 047313          102 HEQGKLKKLLEGIPRNLSDCSCNGCGNIRFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNE  164 (174)
Q Consensus       102 ~e~G~L~~~L~~~~~~~~~~~C~~Cgg~r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~Cne  164 (174)
                      +....|+.+|..+=.             .||.|+.|+..--.+..+..    ..+++|.+|..
T Consensus        77 ~~~~~i~~~L~~fI~-------------~yVlC~~C~spdT~l~k~~r----~~~l~C~aCGa  122 (125)
T PF01873_consen   77 FSSKQIQDLLDKFIK-------------EYVLCPECGSPDTELIKEGR----LIFLKCKACGA  122 (125)
T ss_dssp             SSCCHHHHHHHHHHC-------------HHSSCTSTSSSSEEEEEETT----CCEEEETTTSC
T ss_pred             cCHHHHHHHHHHHHH-------------HEEEcCCCCCCccEEEEcCC----EEEEEecccCC
Confidence            456677777765433             28999999988555543322    14899999975

Archaeal IF2beta contains two independent structural domains: an N-terminal mixed alpha/beta core domain (topological similarity to the common core of ribosomal proteins L23 and L15e), and a C-terminal domain consisting of a zinc-binding C4 finger []. Archaeal IF2beta is a ribosome-dependent GTPase that stimulates the binding of initiator Met-tRNA(i)(Met) to the ribosomes, even in the absence of other factors []. The C-terminal domain of eukaryotic IF5 is involved in the formation of the multi-factor complex (MFC), an important intermediate for the 43S pre-initiation complex assembly []. IF5 interacts directly with IF1, IF2beta and IF3c, which together with IF2-bound Met-tRNA(i)(Met) form the MFC. This entry represents both the N-terminal and zinc-binding domains of IF2, as well as a domain in IF5.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2DCU_B 2D74_B 2E9H_A 2G2K_A 1NEE_A 3CW2_L 2QMU_C 3V11_C 2NXU_A 2QN6_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	174
2klx_A	89	Solution Structure Of Glutaredoxin From Bartonella		1e-05
2khp_A	92	Solution Structure Of Glutaredoxin From Brucella Me		3e-05
1fov_A	82	Glutaredoxin 3 From Escherichia Coli In The Fully O		1e-04
2ht9_A	146	The Structure Of Dimeric Human Glutaredoxin 2 Lengt		2e-04
2fls_A	132	Crystal Structure Of Human Glutaredoxin 2 Complexed		3e-04
2cq9_A	130	Solution Structure Of Rsgi Ruh-044, An N-Terminal D		3e-04
3grx_A	82	Nmr Structure Of Escherichia Coli Glutaredoxin 3-Gl		7e-04

>pdb|2KLX|A Chain A, Solution Structure Of Glutaredoxin From Bartonella Henselae Str. Houston Length = 89

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
Query: 20  PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR 79
           PG    +I YT      R     C+  R LL    V + + D S     R E+    +GR
Sbjct: 2   PGSMKEIILYT------RPNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGR 53
Query: 80  VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGI 114
              P++FI   ++GG D++  L  +GKL  LL+ +
Sbjct: 54  NTFPQIFIGDYHVGGCDDLYALENKGKLDSLLQDV 88

>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella Melitensis Length = 92

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 20  PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR 79
           PG    VI YT      R     C   + LL      F E D S   E R E+    SGR
Sbjct: 2   PGSMVDVIIYT------RPGCPYCARAKALLARKGAEFNEIDASATPELRAEMQER-SGR 54
Query: 80  VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
              P++FI   ++GG D++  L ++GKL  LL+
Sbjct: 55  NTFPQIFIGSVHVGGCDDLYALEDEGKLDSLLK 87

>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized Form Length = 82

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C   + LL S  V+F E  +  +   R+E+    SGR   P++FI  ++IGG D++  L 
Sbjct: 14  CHRAKALLSSKGVSFQELPIDGNAAKREEMIKR-SGRTTVPQIFIDAQHIGGYDDLYALD 72
Query: 103 EQGKLKKLLE 112
            +G L  LL+
Sbjct: 73  ARGGLDPLLK 82

>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2 Length = 146

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 67  EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
           +F+D L+  ++G    PR+F+ G +IGGA +   LH++GKL  L+ 
Sbjct: 89  QFQDALYK-MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 133

>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With Glutathione Length = 132

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 67  EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
           +F+D L+  ++G    PR+F+ G +IGGA +   LH++GKL  L+ 
Sbjct: 75  QFQDALYK-MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 119

>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain Of Glutaredoxin 2 From Human Cdna Length = 130

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 67  EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
           +F+D L+  ++G    PR+F+ G +IGGA +   LH++GKL  L+ 
Sbjct: 67  QFQDALYK-MTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVH 111

>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin 3-Glutathione Mixed Disulfide Complex, 20 Structures Length = 82

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 47  RFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGK 106
           + LL S  V+F E  +  +   R+E+    SGR   P++FI  ++IGG D++  L  +G 
Sbjct: 18  KALLSSKGVSFQELPIDGNAAKREEMIKR-SGRTTVPQIFIDAQHIGGYDDLYALDARGG 76
Query: 107 LKKLLE 112
           L  LL+
Sbjct: 77  LDPLLK 82

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	174
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	8e-30
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	6e-26
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	1e-23
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	1e-11
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	1e-11
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	1e-11
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	1e-11
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	1e-11
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	2e-11
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	2e-11
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	3e-11
1kte_A	105	Thioltransferase; redox-active center, electron tr	9e-11
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	1e-10
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	2e-10
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	4e-10
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	1e-09
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	1e-08
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	1e-08
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	3e-06
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	1e-05
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	2e-05
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	2e-05
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	3e-05
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	5e-05
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	7e-05
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	7e-04

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score =  104 bits (260), Expect = 8e-30
 Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 24  DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS-SLSGRVIP 82
             +  Y+TS+ G R+       +  +L   ++ +   D+S     RDE+ + + + +  P
Sbjct: 2   SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATP 61

Query: 83  PRLFIKGRYIGGADEVVGLHEQGKLKKLL 111
           P++     Y G  +  V   EQ  L++ L
Sbjct: 62  PQIVNGNHYCGDYELFVEAVEQDTLQEFL 90

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 95.1 bits (236), Expect = 6e-26
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 26  VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELW-------SSLSG 78
           +  Y  S  G     +  + +   L++ K+ F E+D++ + E R  +           +G
Sbjct: 2   IRVYIASSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATG 61

Query: 79  RVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPR 116
             +PP++F + +Y G  D      E   +   L     
Sbjct: 62  YPLPPQIFNESQYRGDYDAFFEARENNAVYAFLGLTAP 99

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 88.9 bits (220), Expect = 1e-23
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 7/101 (6%)

Query: 26  VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-------SG 78
           +  +  S  G     +  + +   L++ K+ F E D+++  E R  ++ ++        G
Sbjct: 10  IRVFIASSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQG 69

Query: 79  RVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRNLS 119
             +PP++F   RY G  D      E   +   L       S
Sbjct: 70  NPLPPQIFNGDRYCGDYDSFFESKESNTVFSFLGLKSGPSS 110

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV 99
           C  ++ LL     ++   ++       + +  L +  +GR   P +FI G+ IGG D VV
Sbjct: 33  CNRVKQLLTQVGASYKVVELDELSDGSQLQSAL-AHWTGRGTVPNVFIGGKQIGGCDTVV 91

Query: 100 GLHEQGKLKKLLE 112
             H++ +L  LL+
Sbjct: 92  EKHQRNELLPLLQ 104

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 58.6 bits (142), Expect = 1e-11
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 43  CRTIRFLLQSFKVTF--YERDVSLHMEFRDELWSSLSGR--VIPPRLFIKGRYIGGADEV 98
           C   + L     V +   E D+  +     +    ++G   V  PR+F+ G +IGGA + 
Sbjct: 62  CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIFVNGTFIGGATDT 119

Query: 99  VGLHEQGKLKKLLE 112
             LH++GKL  L+ 
Sbjct: 120 HRLHKEGKLLPLVH 133

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C   + LL      F E D S   E R E+    SGR   P++FI   ++GG D++  L 
Sbjct: 19  CARAKALLARKGAEFNEIDASATPELRAEM-QERSGRNTFPQIFIGSVHVGGCDDLYALE 77

Query: 103 EQGKLKKLLE 112
           ++GKL  LL+
Sbjct: 78  DEGKLDSLLK 87

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 56.8 bits (138), Expect = 1e-11
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C   + LL S  V+F E  +  +   R+E+    SGR   P++FI  ++IGG D++  L 
Sbjct: 14  CHRAKALLSSKGVSFQELPIDGNAAKREEMIK-RSGRTTVPQIFIDAQHIGGYDDLYALD 72

Query: 103 EQGKLKKLLE 112
            +G L  LL+
Sbjct: 73  ARGGLDPLLK 82

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 57.7 bits (140), Expect = 1e-11
 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 43  CRTIRFLLQSFKVTF--YERDVSLHMEFRDELWSSLSGR--VIPPRLFIKGRYIGGADEV 98
           C   + L     V +   E D+  +     +    ++G   V  PR+F+ G +IGGA + 
Sbjct: 40  CTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTV--PRIFVNGTFIGGATDT 97

Query: 99  VGLHEQGKLKKLLE 112
             LH++GKL  L+ 
Sbjct: 98  HRLHKEGKLLPLVH 111

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 43  CRTIRFLLQSFKVTF--YERDVSLHMEFRDELWSSLSGR--VIPPRLFIKGRYIGGADEV 98
              ++ L  S  V     E D         E+ S ++ +  V  P +F+   ++GG D+ 
Sbjct: 30  STRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTV--PNIFVNKVHVGGCDQT 87

Query: 99  VGLHEQGKLKKLLE 112
              ++ G L+KLL+
Sbjct: 88  FQAYQSGLLQKLLQ 101

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 5/75 (6%)

Query: 43  CRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE 97
            + ++ LL++           E D   H E   E    ++GR   P L + G   GG +E
Sbjct: 27  SKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVNGVSRGGNEE 86

Query: 98  VVGLHEQGKLKKLLE 112
           +  LH QGKL + L+
Sbjct: 87  IKKLHTQGKLLESLQ 101

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 56.1 bits (136), Expect = 3e-11
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C     LL+   V F E  +    E R+ + +  +G+   P++FI  ++IGG D++  L 
Sbjct: 29  CMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYALD 88

Query: 103 EQGKLKKLLE 112
             GKL  LL 
Sbjct: 89  GAGKLDPLLH 98

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 54.9 bits (133), Expect = 9e-11
 Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 43  CRTIRFLLQSFK-----VTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE 97
           CR  + LL         + F +   +       +    L+G    PR+FI    IGG  +
Sbjct: 25  CRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGKECIGGCTD 84

Query: 98  VVGLHEQGKLKKLLEGI 114
           +  +H++G+L   L+ +
Sbjct: 85  LESMHKRGELLTRLQQV 101

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHM----EFRDELWSSLSGRVIPPRLFIKGRYIGGADEV 98
           C  ++ L +   V     ++        + +  L   L+G+   P +F+ G++IGG  + 
Sbjct: 32  CTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVL-ERLTGQHTVPNVFVCGKHIGGCTDT 90

Query: 99  VGLHEQGKLKKLLE 112
           V L+ +G L+ +L 
Sbjct: 91  VKLNRKGDLELMLA 104

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 9/78 (11%)

Query: 44  RTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGR--VIPPRLFIKGRYIGGAD 96
            T+  L Q       K    E D   +     +    +SG+  V  P ++I G++IGG  
Sbjct: 52  ATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTV--PNVYINGKHIGGNS 109

Query: 97  EVVGLHEQGKLKKLLEGI 114
           ++  L + GKL ++L+ +
Sbjct: 110 DLETLKKNGKLAEILKPV 127

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 52.9 bits (128), Expect = 4e-10
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C+  R LL    V + + D S     R E+    +GR   P++FI   ++GG D++  L 
Sbjct: 19  CKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALE 76

Query: 103 EQGKLKKLLEGI 114
            +GKL  LL+ +
Sbjct: 77  NKGKLDSLLQDV 88

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 54  KVTFYERDVSLHMEFRDELWSSLSGR--VIPPRLFIKGRYIGGADEVVGLHEQGKLKKLL 111
           KV   + +              ++G+  V  P ++I G++IGG D++  L E G+L++LL
Sbjct: 55  KVLVLQLNDMKEGADIQAALYEINGQRTV--PNIYINGKHIGGNDDLQELRETGELEELL 112

Query: 112 EGI 114
           E I
Sbjct: 113 EPI 115

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 52.4 bits (125), Expect = 1e-08
 Identities = 18/61 (29%), Positives = 32/61 (52%)

Query: 54  KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLEG 113
           KV   + +              ++G+   P ++I G++IGG D++  L E G+L++LLE 
Sbjct: 291 KVLVLQLNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEP 350

Query: 114 I 114
           I
Sbjct: 351 I 351

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 43  CRTIRFLLQSFKV-----TFYERDVSLHMEFRDELWSSLSGR--VIPPRLFIKGRYIGGA 95
           CR    +L  F          +           + +  ++G   V  PR+F     IGG 
Sbjct: 32  CRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTV--PRIFFGKTSIGGY 89

Query: 96  DEVVGLHEQGKLKKLLEGI 114
            +++ +     L  +L  I
Sbjct: 90  SDLLEIDNMDALGDILSSI 108

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A Length = 135

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 17/68 (25%), Positives = 36/68 (52%), Gaps = 11/68 (16%)

Query: 50  LQSFKVTFYERDVSLHMEFRDEL-----WSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ 104
           L +    F   D+  + + R EL     W +       P+L++ G  +GG D V+ ++++
Sbjct: 60  LAACGERFAYVDILQNPDIRAELPKYANWPTF------PQLWVDGELVGGCDIVIEMYQR 113

Query: 105 GKLKKLLE 112
           G+L++L++
Sbjct: 114 GELQQLIK 121

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} Length = 109

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 49  LLQSFKVTFYERDVSLHMEFRDEL-----WSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103
           +L++  V F + ++  +   R  L     W +       P+L+I G + GG D  +   +
Sbjct: 42  ILKNLNVPFEDVNILENEMLRQGLKEYSNWPTF------PQLYIGGEFFGGCDITLEAFK 95

Query: 104 QGKLKKLLE 112
            G+L++ +E
Sbjct: 96  TGELQEEVE 104

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Length = 109

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 49  LLQSFKVTFYERDVSLHMEFRDEL-----WSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103
           +L S  V +   D+    E R  L     W +       P+L+++G  +GG D V  L +
Sbjct: 39  ILNSTGVEYETFDILEDEEVRQGLKTFSNWPTY------PQLYVRGDLVGGLDIVKELKD 92

Query: 104 QGKLKKLLEG 113
            G+L  +L+G
Sbjct: 93  NGELLPILKG 102

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Length = 105

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 49  LLQSFKVTFYERDVSLHMEFRDEL-----WSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103
           +L S  V +   D+    E R  L     W +       P+L++KG  +GG D V  L E
Sbjct: 41  ILNSTGVEYETFDILEDEEVRQGLKAYSNWPTY------PQLYVKGELVGGLDIVKELKE 94

Query: 104 QGKLKKLLEG 113
            G+L  +L G
Sbjct: 95  NGELLPILRG 104

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} Length = 111

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 11/76 (14%)

Query: 49  LLQSFKVTFYERDVSLHMEFRDEL-----WSSLSGRVIPPRLFIKGRYIGGADEVVGLHE 103
           +L    + F   D+    E R  L     W +       P+L++ G  IGG D +  L  
Sbjct: 40  ILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTY------PQLYVSGELIGGLDIIKELEA 93

Query: 104 QGKLKKLLEGIPRNLS 119
             +L  +      NL 
Sbjct: 94  SEELDTICPKAAENLY 109

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} Length = 121

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 83  PRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
           P+L++   +IGG D +  +   G+L  LLE
Sbjct: 76  PQLYVNKEFIGGCDVITSMARSGELADLLE 105

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 36.1 bits (84), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 11/75 (14%)

Query: 43  CRTIRFLLQSFKVTFYERDVS-LHMEFRDELW---SSLSGRVIPPRLFIKGRYIGGADEV 98
           C+     L+   V F    +  L  E R ++     S+SG    P +    +++ G +E 
Sbjct: 25  CKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYNE- 83

Query: 99  VGLHEQGKLKKLLEG 113
                  KLK+L+ G
Sbjct: 84  ------EKLKELIRG 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	174
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	99.92
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	99.91
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.9
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	99.9
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.9
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.89
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.89
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.89
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	99.89
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.88
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.88
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.87
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.86
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.85
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.84
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.81
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.79
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.79
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	99.79
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.77
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.77
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.77
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.75
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.75
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.75
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.71
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.7
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	99.67
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	99.54
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.51
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.51
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.5
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.49
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.45
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.4
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.4
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.15
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.04
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.03
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.01
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	98.74
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	98.69
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	98.69
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	98.67
3l78_A	120	Regulatory protein SPX; transcription, transcripti	98.3
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	98.24
3gkx_A	120	Putative ARSC family related protein; ARSC family	98.23
3fz4_A	120	Putative arsenate reductase; APC61768, structural	98.22
3rdw_A	121	Putative arsenate reductase; structural genomics,	98.18
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	97.98
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	97.96
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	97.95
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	97.79
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	97.71
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	97.6
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	97.58
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	97.57
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	97.54
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	97.53
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	97.48
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	97.47
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	97.46
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	97.46
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	97.46
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	97.45
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	97.45
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.44
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	97.44
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	97.43
3lyp_A	215	Stringent starvation protein A; structural genomic	97.4
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	97.37
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	97.36
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.36
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	97.35
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	97.34
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	97.32
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	97.32
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	97.3
3lyk_A	216	Stringent starvation protein A homolog; structural	97.3
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	97.3
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	97.3
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	97.29
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	97.29
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	97.28
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	97.28
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	97.28
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	97.28
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	97.27
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	97.26
3lxz_A	229	Glutathione S-transferase family protein; structur	97.25
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	97.24
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.22
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	97.21
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	97.21
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	97.21
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.2
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.2
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.19
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	97.16
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	97.16
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	97.15
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	97.14
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.14
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	97.13
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	97.13
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	97.12
4dej_A	231	Glutathione S-transferase related protein; transfe	97.11
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.11
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	97.11
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.11
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	97.11
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	97.1
1r5a_A	218	Glutathione transferase; glutathione S-transferase	97.1
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	97.09
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.09
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	97.09
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.08
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	97.08
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.08
3n5o_A	235	Glutathione transferase; seattle structural genomi	97.07
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	97.05
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.05
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	97.05
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	97.03
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	97.03
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	97.02
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	97.01
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.01
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	97.01
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	97.0
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	97.0
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.0
2l57_A	126	Uncharacterized protein; structural genomics, unkn	96.99
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.99
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	96.97
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	96.96
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	96.96
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	96.95
3niv_A	222	Glutathione S-transferase; structural genomics, PS	96.93
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	96.93
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	96.93
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	96.93
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	96.92
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	96.91
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	96.9
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	96.9
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	96.88
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	96.87
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	96.87
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	96.87
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	96.86
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.84
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	96.84
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	96.84
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	96.83
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	96.83
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	96.81
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	96.81
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	96.79
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	96.78
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	96.78
4ikh_A	244	Glutathione S-transferase; enzyme function initiat	96.77
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.75
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	96.72
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	96.72
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	96.71
4glt_A	225	Glutathione S-transferase-like protein; structural	96.71
2wb9_A	211	Glutathione transferase sigma class; thioredoxin f	96.71
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.7
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	96.7
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	96.7
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	96.69
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	96.66
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	96.65
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	96.63
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.63
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	96.6
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	96.59
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	96.57
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	96.54
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	96.54
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	96.52
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	96.47
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	96.44
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.43
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	96.41
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	96.39
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	96.39
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	96.38
3gx0_A	215	GST-like protein YFCG; transferase, glutathione, g	96.35
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	96.34
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	96.31
4exj_A	238	Uncharacterized protein; transferase-like protein,	96.29
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	96.29
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.29
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.17
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.14
1z6m_A	175	Conserved hypothetical protein; structural genomic	96.11
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.09
3c8e_A	288	YGHU, glutathione S-transferase homologue; glutath	96.08
1exk_A	79	DNAJ protein; extended beta-hairpin, CXXCXGXG, zin	96.07
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.03
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.02
1gsu_A	219	GST, CGSTM1-1, class-MU glutathione S-transferase;	95.97
4hz4_A	217	Glutathione-S-transferase; enzyme function initiat	95.95
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	95.9
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	95.89
4ecj_A	244	Glutathione S-transferase; transferase-like protei	95.84
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	95.82
2fhe_A	216	GST, glutathione S-transferase; transferase-substr	95.8
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	95.78
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	95.76
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	95.71
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	95.71
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	95.69
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	95.67
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	95.65
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	95.65
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	95.64
4id0_A	214	Glutathione S-transferase-like protein YIBF; GST,	95.57
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	95.57
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	95.49
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	95.45
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	95.45
2ctt_A	104	DNAJ homolog subfamily A member 3; ZING finger, be	95.41
1mek_A	120	Protein disulfide isomerase; electron transport, r	95.41
4gf0_A	215	Glutathione S-transferase; GST, enzyme function in	95.33
1dug_A	234	Chimera of glutathione S-transferase-synthetic lin	95.29
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	95.14
3uar_A	227	Glutathione S-transferase; GSH binding site; HET:	94.91
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	94.88
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	93.89
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	94.83
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	94.77
3ppu_A	352	Glutathione-S-transferase; GST fold; HET: GSH; 2.3	94.73
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	94.67
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	94.63
3h1n_A	252	Probable glutathione S-transferase; APC84167, bord	94.58
2pvq_A	201	Glutathione S-transferase; xenobiotics detoxificat	94.56
2kuc_A	130	Putative disulphide-isomerase; structural genomics	94.56
1n2a_A	201	Glutathione S-transferase; HET: GTS; 1.90A {Escher	94.5
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	94.41
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	94.37
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	94.33
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	94.23
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	94.22
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	94.22
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	93.2
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	94.08
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	94.02
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	94.0
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	93.98
1pmt_A	203	PMGST, GST B1-1, glutathione transferase; glutathi	93.94
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	93.93
3ktb_A	106	Arsenical resistance operon trans-acting represso;	93.82
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	93.81
2dsa_A	203	Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu	93.71
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	93.7
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	93.69
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	93.66
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	93.62
3kgk_A	110	Arsenical resistance operon trans-acting represso;	93.61
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	93.48
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	93.43
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	93.35
1xg8_A	111	Hypothetical protein SA0798; structural genomics,	93.35
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	93.35
1f2e_A	201	Glutathione S-transferase; GST complexed with glut	93.35
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	93.32
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	93.31
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	93.27
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	93.02
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	92.83
3m1g_A	362	Putative glutathione S-transferase; ECM4-like subf	92.73
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	92.6
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	92.42
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	92.36
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	92.34
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	92.29
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	92.15
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	92.14
1nlt_A	248	Protein YDJ1, mitochondrial protein import protein	92.08
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	91.92
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	91.82
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	91.47
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	91.33
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	90.89
3lcz_A	53	YCZA, inhibitor of trap, regulated by T-box (Trp)	90.76
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	90.72
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	90.65
1b8x_A	280	Protein (AML-1B); nuclear matrix targeting signal	90.58
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	90.47
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	90.45
2bx9_A	53	Anti-trap, AT, tryptophan RNA-binding attenuator p	90.15
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	89.64
2lrt_A	152	Uncharacterized protein; structural genomics, thio	89.59
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	89.42
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	89.24
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	89.24
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	88.82
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	88.59
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	88.58
3ira_A	173	Conserved protein; methanosarcina mazei,structural	87.26
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	87.17
2fno_A	248	AGR_PAT_752P; thioredoxin fold, GST C-terminal dom	87.07
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	86.75
4gci_A	211	Glutathione S-transferase; GST, enzyme function in	86.72
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	86.41
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	86.01
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	85.3
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	85.0
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	84.82
2qsi_A	137	Putative hydrogenase expression/formation protein;	83.36
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	83.25
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	83.03
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	82.74
3raz_A	151	Thioredoxin-related protein; structural genomics,	82.29
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	81.93
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	81.61
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	80.97

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=99.92  E-value=5.2e-25  Score=163.33  Aligned_cols=96  Identities=17%  Similarity=0.291  Sum_probs=87.4

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCC-cEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKV-TFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v-~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      +.+++||||++++. ..+.||+|.+|+++|+.+++ +|+++||..|++.+++|++++| ++|+|||||+|++|||+|+++
T Consensus        17 i~~~~VvvF~Kgt~-~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg-~~TvPqIFI~g~~IGG~Ddl~   94 (118)
T 2wul_A           17 VKKDKVVVFLKGTP-EQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSN-WPTIPQVYLNGEFVGGCDILL   94 (118)
T ss_dssp             HHHSSEEEEESBCS-SSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHT-CCSSCEEEETTEEEECHHHHH
T ss_pred             HhcCCEEEEEcCCC-CCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhcc-CCCCCeEeECCEEECCHHHHH
Confidence            56789999998732 22359999999999999999 6999999999999999999999 999999999999999999999


Q ss_pred             hhhhcCchhHHhhcCCCCC
Q 047313          100 GLHEQGKLKKLLEGIPRNL  118 (174)
Q Consensus       100 ~l~e~G~L~~~L~~~~~~~  118 (174)
                      +|+++|+|.++|+.++...
T Consensus        95 ~l~~~GeL~~lL~~~Gi~~  113 (118)
T 2wul_A           95 QMHQNGDLVEELKKLGIHS  113 (118)
T ss_dssp             HHHHHTHHHHHHHHTTCCC
T ss_pred             HHHHCCCHHHHHHHcCCcc
Confidence            9999999999999887654

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=99.91  E-value=2.3e-24  Score=157.48  Aligned_cols=96  Identities=19%  Similarity=0.267  Sum_probs=86.7

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      +.+++||||++... ..++||+|.+|+++|++++|+|+++||..|++.+++|++++| +.++|+|||||++|||+|++++
T Consensus        13 i~~~~Vvlf~kg~~-~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g-~~tvP~ifi~g~~iGG~d~l~~   90 (111)
T 3zyw_A           13 THAAPCMLFMKGTP-QEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSS-WPTYPQLYVSGELIGGLDIIKE   90 (111)
T ss_dssp             HTSSSEEEEESBCS-SSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEETTEEEECHHHHHH
T ss_pred             HhcCCEEEEEecCC-CCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHC-CCCCCEEEECCEEEecHHHHHH
Confidence            57889999999211 012799999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             hhhcCchhHHhhcCCCCC
Q 047313          101 LHEQGKLKKLLEGIPRNL  118 (174)
Q Consensus       101 l~e~G~L~~~L~~~~~~~  118 (174)
                      |+++|+|.++|+.++.+.
T Consensus        91 l~~~G~L~~~L~~a~~~~  108 (111)
T 3zyw_A           91 LEASEELDTICPKAAENL  108 (111)
T ss_dssp             HHHTTCHHHHSCCCCCCC
T ss_pred             HHHCCCHHHHHHhCcccc
Confidence            999999999999877654

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.90  E-value=1e-23  Score=157.01  Aligned_cols=86  Identities=21%  Similarity=0.344  Sum_probs=79.3

Q ss_pred             EEEEEeecCCCCCCChhH------HHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC-------CCCCCcEEEECCEEE
Q 047313           26 VIFYTTSLRGIRKTFEDC------RTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS-------GRVIPPRLFIKGRYI   92 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C------~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g-------~~~~~P~vFI~G~~I   92 (174)
                      |+||||+      +|++|      .+|+++|+++||+|+|+||++|++.+++|.++++       |.+++|||||||+||
T Consensus         2 V~vYtt~------~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~i   75 (121)
T 1u6t_A            2 IRVYIAS------SSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYR   75 (121)
T ss_dssp             EEEEECT------TCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEE
T ss_pred             EEEEecC------CCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEE
Confidence            8999998      56776      8999999999999999999999999999999983       488999999999999


Q ss_pred             eccchhhhhhhcCchhHHhhcCCCC
Q 047313           93 GGADEVVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        93 GG~del~~l~e~G~L~~~L~~~~~~  117 (174)
                      ||+|++.+|+++|+|.++|...+..
T Consensus        76 GG~Dd~~~l~e~g~L~~lL~~~~~~  100 (121)
T 1u6t_A           76 GDYDAFFEARENNAVYAFLGLTAPP  100 (121)
T ss_dssp             EEHHHHHHHHHTTCHHHHHTCCCCT
T ss_pred             echHHHHHhhhhChHHHHHcCCCCC
Confidence            9999999999999999999776654

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.4e-23  Score=155.61  Aligned_cols=96  Identities=21%  Similarity=0.258  Sum_probs=87.8

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc---EEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT---FYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~---~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      +.+++|+||+++.. ..+.||+|.+|+++|++++|+   |+++||..+++.+++|++++| +.++|+|||||++|||+|+
T Consensus        13 i~~~~Vvvfsk~t~-~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg-~~tvP~vfI~g~~iGG~d~   90 (121)
T 3gx8_A           13 IESAPVVLFMKGTP-EFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSE-WPTIPQLYVNKEFIGGCDV   90 (121)
T ss_dssp             HHSCSEEEEESBCS-SSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHT-CCSSCEEEETTEEEESHHH
T ss_pred             hccCCEEEEEeccC-CCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhC-CCCCCeEEECCEEEecHHH
Confidence            56789999999732 133699999999999999999   999999999999999999998 9999999999999999999


Q ss_pred             hhhhhhcCchhHHhhcCCCCC
Q 047313           98 VVGLHEQGKLKKLLEGIPRNL  118 (174)
Q Consensus        98 l~~l~e~G~L~~~L~~~~~~~  118 (174)
                      +++|+++|+|.++|+.+++..
T Consensus        91 l~~l~~~G~L~~~L~~~g~~~  111 (121)
T 3gx8_A           91 ITSMARSGELADLLEEAQALV  111 (121)
T ss_dssp             HHHHHHHTHHHHHHHHTTCBC
T ss_pred             HHHHHHcCChHHHHHHcCCCC
Confidence            999999999999999887764

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.89  E-value=1e-23  Score=153.11  Aligned_cols=92  Identities=20%  Similarity=0.309  Sum_probs=84.3

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      +.+++|+||+++.. ..+.||+|.+|+++|+.++|+|+++||..+++.+++|++++| +.++|+|||||++|||+|++++
T Consensus        15 i~~~~Vvvy~k~t~-~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g-~~tvP~ifi~g~~iGG~d~l~~   92 (109)
T 3ipz_A           15 VNSEKVVLFMKGTR-DFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN-WPTFPQLYIGGEFFGGCDITLE   92 (109)
T ss_dssp             HTSSSEEEEESBCS-SSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT-CSSSCEEEETTEEEECHHHHHH
T ss_pred             HccCCEEEEEecCC-CCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC-CCCCCeEEECCEEEeCHHHHHH
Confidence            57889999999632 223699999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             hhhcCchhHHhhcC
Q 047313          101 LHEQGKLKKLLEGI  114 (174)
Q Consensus       101 l~e~G~L~~~L~~~  114 (174)
                      |+++|+|.++|+.+
T Consensus        93 l~~~G~L~~~L~~a  106 (109)
T 3ipz_A           93 AFKTGELQEEVEKA  106 (109)
T ss_dssp             HHHHSHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHh
Confidence            99999999999864

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.89  E-value=5.1e-23  Score=144.78  Aligned_cols=83  Identities=22%  Similarity=0.363  Sum_probs=78.2

Q ss_pred             CcEEEEEeecCCCCCCChhH------HHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECCEEEeccc
Q 047313           24 DSVIFYTTSLRGIRKTFEDC------RTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKGRYIGGAD   96 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C------~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G~~IGG~d   96 (174)
                      .+|+||+++      +|++|      .+|+++|++++|+|+++||..+++.+++|++++|. ..++|+|||||++|||++
T Consensus         2 ~~v~ly~~~------~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d   75 (93)
T 1t1v_A            2 SGLRVYSTS------VTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYE   75 (93)
T ss_dssp             CCEEEEECS------SCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHH
T ss_pred             CCEEEEEcC------CCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHH
Confidence            479999998      79999      99999999999999999999999999999999873 569999999999999999


Q ss_pred             hhhhhhhcCchhHHhh
Q 047313           97 EVVGLHEQGKLKKLLE  112 (174)
Q Consensus        97 el~~l~e~G~L~~~L~  112 (174)
                      ++.+|+++|+|.++|+
T Consensus        76 ~l~~l~~~g~L~~~l~   91 (93)
T 1t1v_A           76 LFVEAVEQDTLQEFLK   91 (93)
T ss_dssp             HHHHHHHTTCHHHHTT
T ss_pred             HHHHHHhcCCHHHHhC
Confidence            9999999999999995

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=7.3e-23  Score=149.16  Aligned_cols=88  Identities=20%  Similarity=0.320  Sum_probs=81.6

Q ss_pred             CcEEEEEeecCCCCCCChhHH------HHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc-------CCCCCCcEEEECCE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCR------TIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-------SGRVIPPRLFIKGR   90 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~------~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~-------g~~~~~P~vFI~G~   90 (174)
                      -+|+||+++      .|++|.      +|+++|++++|+|+++||..+++.+++|++++       +++.++|+|||||+
T Consensus         8 m~V~vy~~~------~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~   81 (111)
T 2ct6_A            8 MVIRVFIAS------SSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDR   81 (111)
T ss_dssp             CCEEEEECS------SCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTE
T ss_pred             cEEEEEEcC------CCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCE
Confidence            379999998      799999      89999999999999999999999999999996       14899999999999


Q ss_pred             EEeccchhhhhhhcCchhHHhhcCCCC
Q 047313           91 YIGGADEVVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        91 ~IGG~del~~l~e~G~L~~~L~~~~~~  117 (174)
                      +|||+|++.+|+++|+|.++|+..++.
T Consensus        82 ~iGG~d~l~~l~~~g~L~~~L~~~~~~  108 (111)
T 2ct6_A           82 YCGDYDSFFESKESNTVFSFLGLKSGP  108 (111)
T ss_dssp             EEEEHHHHHHHHTTTCHHHHHTCCSSS
T ss_pred             EEeCHHHHHHHHHcCCHHHHHcCCCCC
Confidence            999999999999999999999876654

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.8e-23  Score=154.79  Aligned_cols=100  Identities=24%  Similarity=0.327  Sum_probs=88.6

Q ss_pred             cchHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC---CCcEEEEECCCC---HHHHHHHHHhcCCCCC
Q 047313            8 SPFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF---KVTFYERDVSLH---MEFRDELWSSLSGRVI   81 (174)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~---~v~~~e~Dv~~~---~~~~~el~~~~g~~~~   81 (174)
                      +||..+|++.-   ..++|+||+++      +||+|.+|+++|++.   +++|+++||..+   ++.+++|++++| +.+
T Consensus         1 f~p~~~~~~ii---~~~~Vvvysk~------~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G-~~t   70 (127)
T 3l4n_A            1 FNVQKEYSLIL---DLSPIIIFSKS------TCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTG-RGT   70 (127)
T ss_dssp             CCHHHHHHHHH---TSCSEEEEECT------TCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHS-CCS
T ss_pred             CCHHHHHHHHH---ccCCEEEEEcC------CCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcC-CCC
Confidence            46788888754   66789999998      699999999999985   789999999865   567788888888 999


Q ss_pred             CcEEEECCEEEeccchhhhhhhcCchhHHhhcCCCC
Q 047313           82 PPRLFIKGRYIGGADEVVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        82 ~P~vFI~G~~IGG~del~~l~e~G~L~~~L~~~~~~  117 (174)
                      +|+|||+|++|||+|++.+|+++|+|.++|+.++..
T Consensus        71 VP~IfI~G~~IGG~ddl~~l~~~G~L~~lL~~~g~~  106 (127)
T 3l4n_A           71 VPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVWSDG  106 (127)
T ss_dssp             SCEEEETTEECCCHHHHHHHHHTTCHHHHHHHTCTT
T ss_pred             cceEEECCEEEcCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            999999999999999999999999999999987764

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.88  E-value=6.5e-23  Score=155.04  Aligned_cols=94  Identities=19%  Similarity=0.287  Sum_probs=86.0

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      +..++|+||++++.. .++||+|.+|+++|+.++|+|+++||..+++.+++|++++| +.++|+|||||++|||+|++.+
T Consensus        32 i~~~~Vvvy~ks~~~-~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G-~~tvP~VfI~G~~iGG~d~l~~  109 (135)
T 2wci_A           32 IAENPILLYMKGSPK-LPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYAN-WPTFPQLWVDGELVGGCDIVIE  109 (135)
T ss_dssp             HHHCSEEEEESBCSS-SBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEETTEEEESHHHHHH
T ss_pred             hccCCEEEEEEecCC-CCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHC-CCCcCEEEECCEEEEChHHHHH
Confidence            356789999996554 45899999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             hhhcCchhHHhhcCCC
Q 047313          101 LHEQGKLKKLLEGIPR  116 (174)
Q Consensus       101 l~e~G~L~~~L~~~~~  116 (174)
                      |+++|+|.++|+.+++
T Consensus       110 l~~~G~L~~~L~~~g~  125 (135)
T 2wci_A          110 MYQRGELQQLIKETAA  125 (135)
T ss_dssp             HHHHTHHHHHHHHHHH
T ss_pred             HHHCChHHHHHHHcCC
Confidence            9999999999986543

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.88  E-value=3.5e-22  Score=142.91  Aligned_cols=85  Identities=31%  Similarity=0.414  Sum_probs=80.2

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .+++|+||+++      .||+|.+|+.+|++++|+|+++||..+++.+++|.+++++..++|+|||||++|||+++++++
T Consensus        14 ~~~~v~vy~~~------~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~   87 (99)
T 3qmx_A           14 VSAKIEIYTWS------TCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYAL   87 (99)
T ss_dssp             CCCCEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTEEEESHHHHHHH
T ss_pred             CCCCEEEEEcC------CChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEEEeChHHHHHH
Confidence            45799999998      699999999999999999999999999999999999983399999999999999999999999


Q ss_pred             hhcCchhHHhh
Q 047313          102 HEQGKLKKLLE  112 (174)
Q Consensus       102 ~e~G~L~~~L~  112 (174)
                      +++|+|.++|+
T Consensus        88 ~~~g~L~~~L~   98 (99)
T 3qmx_A           88 DGAGKLDPLLH   98 (99)
T ss_dssp             HHTTCHHHHHT
T ss_pred             HHcCCHHHHhc
Confidence            99999999986

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.87  E-value=5.9e-22  Score=143.25  Aligned_cols=93  Identities=24%  Similarity=0.342  Sum_probs=84.6

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .+++|+||++++. .+++|++|.+|+++|+.++|+|+++||..+++.+++|.+++| ..++|+|||||++|||++++.+|
T Consensus        13 ~~~~vvvy~~g~~-~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g-~~~vP~ifi~g~~igG~d~l~~l   90 (109)
T 1wik_A           13 NKASVMLFMKGNK-QEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN-WPTYPQLYVRGDLVGGLDIVKEL   90 (109)
T ss_dssp             TTSSEEEEESSTT-TCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS-CCSSCEEECSSSEEECHHHHHHH
T ss_pred             ccCCEEEEEecCC-CCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC-CCCCCEEEECCEEEcCHHHHHHH
Confidence            5678999999543 235899999999999999999999999999999999999998 99999999999999999999999


Q ss_pred             hhcCchhHHhhcCCC
Q 047313          102 HEQGKLKKLLEGIPR  116 (174)
Q Consensus       102 ~e~G~L~~~L~~~~~  116 (174)
                      +++|+|.++|+...+
T Consensus        91 ~~~g~L~~~L~~a~~  105 (109)
T 1wik_A           91 KDNGELLPILKGESG  105 (109)
T ss_dssp             HHHTCSHHHHHTCCS
T ss_pred             HHCCCHHHHHhcccC
Confidence            999999999986543

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.86  E-value=1.3e-21  Score=140.29  Aligned_cols=100  Identities=24%  Similarity=0.323  Sum_probs=86.8

Q ss_pred             chHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC
Q 047313            9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK   88 (174)
Q Consensus         9 ~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~   88 (174)
                      +....+++..   .+++|+||+++... ++.||+|.+++.+|+.++|+|+++||..+++.+++|.+++| ..++|+||||
T Consensus         5 ~~~~~~~~~i---~~~~vvvf~~g~~~-~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g-~~~vP~v~i~   79 (105)
T 2yan_A            5 KLEERLKVLT---NKASVMLFMKGNKQ-EAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSN-WPTYPQLYVK   79 (105)
T ss_dssp             HHHHHHHHHH---TSSSEEEEESBCSS-SBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHT-CCSSCEEEET
T ss_pred             HHHHHHHHHh---ccCCEEEEEecCCC-CCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHC-CCCCCeEEEC
Confidence            3445555553   45689999994322 34799999999999999999999999999999999999998 8999999999


Q ss_pred             CEEEeccchhhhhhhcCchhHHhhc
Q 047313           89 GRYIGGADEVVGLHEQGKLKKLLEG  113 (174)
Q Consensus        89 G~~IGG~del~~l~e~G~L~~~L~~  113 (174)
                      |++|||++++++|+++|+|.++|+.
T Consensus        80 g~~igg~d~~~~l~~~g~L~~~l~~  104 (105)
T 2yan_A           80 GELVGGLDIVKELKENGELLPILRG  104 (105)
T ss_dssp             TEEEECHHHHHHHHHTTCHHHHHTT
T ss_pred             CEEEeChHHHHHHHHCCCHHHHhcc
Confidence            9999999999999999999999963

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.85  E-value=2.2e-21  Score=141.37  Aligned_cols=85  Identities=19%  Similarity=0.325  Sum_probs=78.1

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--C-HHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--H-MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~-~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      .+++|+||+++      +||+|.+|+.+|++++++|+++||+.  + ++.+++|.+.+| ..++|+|||||++|||++++
T Consensus        15 ~~~~v~vy~~~------~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g-~~tvP~vfi~g~~igG~d~l   87 (114)
T 3h8q_A           15 ERSRVVIFSKS------YCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITN-QKTVPNIFVNKVHVGGCDQT   87 (114)
T ss_dssp             HHCSEEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHS-CCSSCEEEETTEEEESHHHH
T ss_pred             ccCCEEEEEcC------CCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhC-CCccCEEEECCEEEeCHHHH
Confidence            56789999997      79999999999999999999999985  3 566678888888 99999999999999999999


Q ss_pred             hhhhhcCchhHHhhc
Q 047313           99 VGLHEQGKLKKLLEG  113 (174)
Q Consensus        99 ~~l~e~G~L~~~L~~  113 (174)
                      .+|+++|+|.++|+.
T Consensus        88 ~~l~~~G~L~~~l~~  102 (114)
T 3h8q_A           88 FQAYQSGLLQKLLQE  102 (114)
T ss_dssp             HHHHHHTHHHHHHHS
T ss_pred             HHHHHCCCHHHHhcC
Confidence            999999999999984

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.84  E-value=6.5e-21  Score=137.79  Aligned_cols=89  Identities=20%  Similarity=0.380  Sum_probs=78.7

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC----HHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH----MEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~----~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      ..++|+||+++      .||+|.+++.+|+.++++|+++||..+    ++.+++|.+.+| ..++|+|||||++|||+++
T Consensus        17 ~~~~v~vy~~~------~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g-~~tvP~ifi~g~~igG~~~   89 (113)
T 3rhb_A           17 TENTVVIYSKT------WCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTG-QHTVPNVFVCGKHIGGCTD   89 (113)
T ss_dssp             HHSSEEEEECT------TCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHS-CCSSCEEEETTEEEESHHH
T ss_pred             hcCCEEEEECC------CChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhC-CCCcCEEEECCEEEcCcHH
Confidence            45679999998      699999999999999999999999863    677888888888 8999999999999999999


Q ss_pred             hhhhhhcCchhHHhhcCCCC
Q 047313           98 VVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        98 l~~l~e~G~L~~~L~~~~~~  117 (174)
                      +.+|+++|+|.++|+..+..
T Consensus        90 ~~~~~~~g~L~~~l~~~~~~  109 (113)
T 3rhb_A           90 TVKLNRKGDLELMLAEANGK  109 (113)
T ss_dssp             HHHHHHHTHHHHHHTC----
T ss_pred             HHHHHHcCCHHHHHHHHhhh
Confidence            99999999999999887654

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.81  E-value=8.7e-20  Score=136.27  Aligned_cols=85  Identities=22%  Similarity=0.397  Sum_probs=78.5

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHH-HHHHHhCC---CcEEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEec
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTI-RFLLQSFK---VTFYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGG   94 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~v-r~iL~~~~---v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG   94 (174)
                      ..++|+||+++      +||+|.++ +.+|+.++   ++|+++||..+   ++.+++|.+++| ..++|+|||+|++|||
T Consensus        35 ~~~~Vvvy~~~------~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g-~~tVP~vfi~g~~igG  107 (129)
T 3ctg_A           35 GQKEVFVAAKT------YCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISG-QKTVPNVYINGKHIGG  107 (129)
T ss_dssp             HHSSEEEEECT------TCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHS-CCSSCEEEETTEEEES
T ss_pred             cCCCEEEEECC------CCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhC-CCCCCEEEECCEEEcC
Confidence            45679999997      69999999 99999999   99999999876   467889999998 8999999999999999


Q ss_pred             cchhhhhhhcCchhHHhhc
Q 047313           95 ADEVVGLHEQGKLKKLLEG  113 (174)
Q Consensus        95 ~del~~l~e~G~L~~~L~~  113 (174)
                      ++++.+|+++|+|.++|+.
T Consensus       108 ~d~l~~l~~~G~L~~~L~~  126 (129)
T 3ctg_A          108 NSDLETLKKNGKLAEILKP  126 (129)
T ss_dssp             HHHHHHHHHTTHHHHHTTT
T ss_pred             HHHHHHHHHCCCHHHHHHH
Confidence            9999999999999999975

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.79  E-value=1.5e-19  Score=132.70  Aligned_cols=87  Identities=23%  Similarity=0.426  Sum_probs=79.6

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHH-HHHHHhCC---CcEEEEECCCCH---HHHHHHHHhcCCCCCCcEEEECCEEEecc
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTI-RFLLQSFK---VTFYERDVSLHM---EFRDELWSSLSGRVIPPRLFIKGRYIGGA   95 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~v-r~iL~~~~---v~~~e~Dv~~~~---~~~~el~~~~g~~~~~P~vFI~G~~IGG~   95 (174)
                      .++|+||+++      .||+|.++ +.+|+.++   ++|+++||..++   +.+++|.+.+| ..++|+|||+|++|||+
T Consensus        24 ~~~Vvvf~~~------~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g-~~tvP~vfi~g~~igG~   96 (118)
T 3c1r_A           24 ENEIFVASKT------YCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEING-QRTVPNIYINGKHIGGN   96 (118)
T ss_dssp             HSSEEEEECS------SCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHS-CCSSCEEEETTEEEESH
T ss_pred             cCcEEEEEcC------CCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhC-CCCcCEEEECCEEEEcH
Confidence            4579999998      69999999 99999999   999999998764   57888999998 89999999999999999


Q ss_pred             chhhhhhhcCchhHHhhcCCC
Q 047313           96 DEVVGLHEQGKLKKLLEGIPR  116 (174)
Q Consensus        96 del~~l~e~G~L~~~L~~~~~  116 (174)
                      +++.+|+++|+|.++|+..++
T Consensus        97 d~l~~l~~~g~L~~~L~~~g~  117 (118)
T 3c1r_A           97 DDLQELRETGELEELLEPILA  117 (118)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHC
T ss_pred             HHHHHHHHCCcHHHHHHHcCC
Confidence            999999999999999987554

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.79  E-value=7.1e-19  Score=122.00  Aligned_cols=87  Identities=33%  Similarity=0.505  Sum_probs=81.3

Q ss_pred             CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      +|....+|++|+++      .|++|++++.+|+.++++|+++||..++..++++.+.++ ..++|+||+||++|||++++
T Consensus         1 ~p~~m~~v~ly~~~------~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~-~~~vP~l~~~g~~i~g~~~i   73 (92)
T 2khp_A            1 GPGSMVDVIIYTRP------GCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSG-RNTFPQIFIGSVHVGGCDDL   73 (92)
T ss_dssp             CCCCCCCEEEEECT------TCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHT-SSCCCEEEETTEEEESHHHH
T ss_pred             CCCCcccEEEEECC------CChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEcCHHHH
Confidence            35556789999997      699999999999999999999999999999999998888 89999999999999999999


Q ss_pred             hhhhhcCchhHHhh
Q 047313           99 VGLHEQGKLKKLLE  112 (174)
Q Consensus        99 ~~l~e~G~L~~~L~  112 (174)
                      .+++++|+|.++|+
T Consensus        74 ~~~~~~~~l~~~l~   87 (92)
T 2khp_A           74 YALEDEGKLDSLLK   87 (92)
T ss_dssp             HHHHTTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHh
Confidence            99999999999997

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=99.79  E-value=4.2e-19  Score=122.94  Aligned_cols=75  Identities=24%  Similarity=0.280  Sum_probs=67.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECC-----CCHHHHHHHHHhcCCCC-----CCcEEEE-CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS-----LHMEFRDELWSSLSGRV-----IPPRLFI-KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~-----~~~~~~~el~~~~g~~~-----~~P~vFI-~G~~IG   93 (174)
                      +|+||++++..  .+||+|.+|+++|++++|+|+++||.     .+++.+++|.+++| ..     ++|+||| ||++||
T Consensus         1 ~v~iY~~~~~~--~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g-~~~~~~~tvP~v~i~~g~~ig   77 (87)
T 1aba_A            1 MFKVYGYDSNI--HKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLG-RDTQIGLTMPQVFAPDGSHIG   77 (87)
T ss_dssp             CEEEEECCTTT--SCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHT-CSCCTTCCSCEEECTTSCEEE
T ss_pred             CEEEEEeCCCC--CcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhC-CCCCCCCccCEEEEECCEEEe
Confidence            48999997322  26999999999999999999999999     88999999999998 66     9999999 999999


Q ss_pred             ccchhhhhh
Q 047313           94 GADEVVGLH  102 (174)
Q Consensus        94 G~del~~l~  102 (174)
                      |++++.+|+
T Consensus        78 G~d~l~~~~   86 (87)
T 1aba_A           78 GFDQLREYF   86 (87)
T ss_dssp             SHHHHHHHT
T ss_pred             CHHHHHHhc
Confidence            999998886

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.77  E-value=5.3e-19  Score=122.29  Aligned_cols=86  Identities=31%  Similarity=0.552  Sum_probs=79.3

Q ss_pred             CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc-CCCCCCcEEEECCEEEeccch
Q 047313           19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-SGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~-g~~~~~P~vFI~G~~IGG~de   97 (174)
                      ||....+|++|+++      .|++|++++.+|+.++++|+++||.  ++.++++.+.+ | ..++|+||+||++|||+++
T Consensus         1 ~~~mm~~v~~y~~~------~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~-~~~vP~l~~~g~~i~g~~~   71 (89)
T 2klx_A            1 GPGSMKEIILYTRP------NCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANG-RNTFPQIFIGDYHVGGCDD   71 (89)
T ss_dssp             CCCCCCCEEEESCS------CCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHS-SCCSCEEEETTEECCSHHH
T ss_pred             CCCCcceEEEEECC------CChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCC-CCCcCEEEECCEEEeChHH
Confidence            46667789999997      6999999999999999999999998  77788898888 7 8999999999999999999


Q ss_pred             hhhhhhcCchhHHhhc
Q 047313           98 VVGLHEQGKLKKLLEG  113 (174)
Q Consensus        98 l~~l~e~G~L~~~L~~  113 (174)
                      +.+++++|+|.++|+.
T Consensus        72 i~~~~~~g~l~~~l~~   87 (89)
T 2klx_A           72 LYALENKGKLDSLLQD   87 (89)
T ss_dssp             HHHHHHHTTHHHHHHH
T ss_pred             HHHHHHcCcHHHHHhh
Confidence            9999999999999975

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.77  E-value=1.3e-18  Score=117.62  Aligned_cols=81  Identities=32%  Similarity=0.495  Sum_probs=76.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~  104 (174)
                      +|++|+++      .|++|.+++.+|+.++++|+++||..+++.++++.+.+| ..++|+||++|++|||++++.+++++
T Consensus         2 ~i~~y~~~------~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~-~~~vP~l~~~g~~i~g~~~i~~~~~~   74 (82)
T 1fov_A            2 NVEIYTKE------TCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG-RTTVPQIFIDAQHIGGYDDLYALDAR   74 (82)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHS-SCCSCEEEETTEEEESHHHHHHHHHT
T ss_pred             cEEEEECC------CChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhC-CCCcCEEEECCEEEeCHHHHHHHHHC
Confidence            68999987      699999999999999999999999988888899988888 89999999999999999999999999


Q ss_pred             CchhHHhh
Q 047313          105 GKLKKLLE  112 (174)
Q Consensus       105 G~L~~~L~  112 (174)
                      |+|.++|+
T Consensus        75 g~l~~~l~   82 (82)
T 1fov_A           75 GGLDPLLK   82 (82)
T ss_dssp             TCSHHHHC
T ss_pred             CCHHHHhC
Confidence            99999884

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.77  E-value=1.4e-18  Score=123.06  Aligned_cols=88  Identities=24%  Similarity=0.377  Sum_probs=80.8

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc---EEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEecc
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT---FYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGA   95 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~---~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~   95 (174)
                      .+++|++|+++      .||+|.+++.+|+.++++   |+++||..+   ++.+++|.+.+| ..++|+|||+|++|||+
T Consensus        10 ~~~~v~~f~~~------~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g-~~~vP~i~~~g~~i~g~   82 (105)
T 1kte_A           10 QPGKVVVFIKP------TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG-ARTVPRVFIGKECIGGC   82 (105)
T ss_dssp             CTTCEEEEECS------SCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHS-CCCSCEEEETTEEEESH
T ss_pred             ccCCEEEEEcC------CCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhC-CCCcCeEEECCEEEecc
Confidence            55689999997      699999999999999999   999999887   577888988888 89999999999999999


Q ss_pred             chhhhhhhcCchhHHhhcCCC
Q 047313           96 DEVVGLHEQGKLKKLLEGIPR  116 (174)
Q Consensus        96 del~~l~e~G~L~~~L~~~~~  116 (174)
                      +++.+++++|+|.++|+..++
T Consensus        83 ~~~~~~~~~g~L~~~l~~~g~  103 (105)
T 1kte_A           83 TDLESMHKRGELLTRLQQVGA  103 (105)
T ss_dssp             HHHHHHHHHTHHHHHHHHHTC
T ss_pred             HHHHHHHHCCcHHHHHHHcCC
Confidence            999999999999999987654

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.75  E-value=3e-18  Score=121.49  Aligned_cols=68  Identities=18%  Similarity=0.240  Sum_probs=62.8

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccc
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGAD   96 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~d   96 (174)
                      +.+|+||+++      +||+|.++|++|+++||+|+++||+.|++.++++.++++|.+++|+||| ||+.++|++
T Consensus         3 ta~I~vYs~~------~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~   71 (92)
T 2lqo_A            3 TAALTIYTTS------WCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPS   71 (92)
T ss_dssp             SSCEEEEECT------TCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCC
T ss_pred             CCcEEEEcCC------CCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCC
Confidence            4679999998      6999999999999999999999999999999999999866999999999 688888875

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.75  E-value=4.5e-18  Score=123.35  Aligned_cols=92  Identities=21%  Similarity=0.294  Sum_probs=83.6

Q ss_pred             CCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc---EEEEECCCCH---HHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313           19 PPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT---FYERDVSLHM---EFRDELWSSLSGRVIPPRLFIKGRYI   92 (174)
Q Consensus        19 ~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~---~~e~Dv~~~~---~~~~el~~~~g~~~~~P~vFI~G~~I   92 (174)
                      ....+++|++|+++      .||+|.+++.+|+.++++   |+++||..++   +.+++|.+.+| ..++|+|||+|++|
T Consensus        14 ~~i~~~~vv~f~~~------~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g-~~~vP~v~i~g~~i   86 (114)
T 2hze_A           14 QRLANNKVTIFVKY------TCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITG-GKTVPRIFFGKTSI   86 (114)
T ss_dssp             TTCCTTCEEEEECT------TCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHS-CCSSCEEEETTEEE
T ss_pred             HHhccCCEEEEEeC------CChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhC-CCCcCEEEECCEEE
Confidence            44567899999998      699999999999999999   9999998875   77888998888 89999999999999


Q ss_pred             eccchhhhhhhcCchhHHhhcCCCC
Q 047313           93 GGADEVVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        93 GG~del~~l~e~G~L~~~L~~~~~~  117 (174)
                      ||++++..++++|+|.++|+..+..
T Consensus        87 gg~~~~~~~~~~~~L~~~L~~~g~~  111 (114)
T 2hze_A           87 GGYSDLLEIDNMDALGDILSSIGVL  111 (114)
T ss_dssp             ESHHHHHHHHHTTCHHHHHHHTTCB
T ss_pred             eCcHHHHHHHHCChHHHHHHHcCCe
Confidence            9999999999999999999886653

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.75  E-value=7.9e-19  Score=151.54  Aligned_cols=90  Identities=24%  Similarity=0.358  Sum_probs=80.4

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHH-HHHhCCCcEEEEEC------CCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRF-LLQSFKVTFYERDV------SLHMEFRDELWSSLSGRVIPPRLFIKGRYIG   93 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~-iL~~~~v~~~e~Dv------~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG   93 (174)
                      +.+++|+||+++      +||+|.+|++ +|++++|+|+++||      ..+++++++|++++| ++++|||||||++||
T Consensus       258 I~~~~VvVYsk~------~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG-~~TVPqVFI~Gk~IG  330 (362)
T 2jad_A          258 IAENEIFVASKT------YCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEING-QRTVPNIYINGKHIG  330 (362)
T ss_dssp             HHTCSEEEEECT------TCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHC-CCSSCEEEETTEEEE
T ss_pred             hccCCEEEEEcC------CCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHC-CCCcCEEEECCEEEE
Confidence            567899999997      7999999997 89999999877766      457889999999998 999999999999999


Q ss_pred             ccchhhhhhhcCchhHHhhcCCCC
Q 047313           94 GADEVVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        94 G~del~~l~e~G~L~~~L~~~~~~  117 (174)
                      |+|+|++|+++|+|.++|+.+++.
T Consensus       331 G~DdL~~L~~~GeL~~lL~~~~~~  354 (362)
T 2jad_A          331 GNDDLQELRETGELEELLEPILAN  354 (362)
T ss_dssp             SHHHHHHHHHSSHHHHHHHHHC--
T ss_pred             ChHHHHHhhhCChHHHHHHhCchh
Confidence            999999999999999999876654

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=2.6e-17  Score=122.41  Aligned_cols=99  Identities=23%  Similarity=0.490  Sum_probs=85.7

Q ss_pred             chHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHhcCCCCCCcEE
Q 047313            9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---MEFRDELWSSLSGRVIPPRL   85 (174)
Q Consensus         9 ~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~v   85 (174)
                      .....|.+..   ..++|+||+++      .|++|.+++.+|+.++++|+++||..+   ++++++|.+.+| ..++|+|
T Consensus        15 ~~~~~~~~~i---~~~~vvvf~~~------~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g-~~~vP~l   84 (130)
T 2cq9_A           15 APVNQIQETI---SDNCVVIFSKT------SCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG-ERTVPRI   84 (130)
T ss_dssp             CHHHHHHHHH---HHSSEEEEECS------SCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHS-SCCSSEE
T ss_pred             HHHHHHHHHH---cCCcEEEEEcC------CChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhC-CCCcCEE
Confidence            3444454443   34579999997      699999999999999999999999887   788888998888 8999999


Q ss_pred             EECCEEEeccchhhhhhhcCchhHHhhcCCCC
Q 047313           86 FIKGRYIGGADEVVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        86 FI~G~~IGG~del~~l~e~G~L~~~L~~~~~~  117 (174)
                      ||+|++|||++++..+++.|+|.++|+.++..
T Consensus        85 ~i~G~~igg~~~l~~~~~~~~L~~~L~~~g~~  116 (130)
T 2cq9_A           85 FVNGTFIGGATDTHRLHKEGKLLPLVHQCYLK  116 (130)
T ss_dssp             EETTEEEEEHHHHHHHHHHTSSHHHHHHHSSS
T ss_pred             EECCEEEcChHHHHHHHHcCcHHHHHHHcCcH
Confidence            99999999999999999999999999887653

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.70  E-value=5e-17  Score=123.75  Aligned_cols=88  Identities=25%  Similarity=0.543  Sum_probs=80.6

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      +++|+||+++      .|++|.+++.+|+.++++|+++||..+   ++.+++|.+.+| ..++|+|||+|++|||++++.
T Consensus        48 ~~~Vvvf~~~------~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~~g-~~tvP~ifi~G~~igG~d~l~  120 (146)
T 2ht9_A           48 DNCVVIFSKT------SCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTG-ERTVPRIFVNGTFIGGATDTH  120 (146)
T ss_dssp             HCSEEEEECT------TCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHHHS-CCCSCEEEETTEEEESHHHHH
T ss_pred             CCCEEEEECC------CChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHHhC-CCCcCeEEECCEEEeCchHHH
Confidence            4579999997      699999999999999999999999877   778888999888 899999999999999999999


Q ss_pred             hhhhcCchhHHhhcCCCC
Q 047313          100 GLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus       100 ~l~e~G~L~~~L~~~~~~  117 (174)
                      .++++|+|.++|+.++..
T Consensus       121 ~l~~~g~L~~~L~~~g~~  138 (146)
T 2ht9_A          121 RLHKEGKLLPLVHQCYLK  138 (146)
T ss_dssp             HHHHTTCHHHHHHHTTC-
T ss_pred             HHHHcChHHHHHHHcCcc
Confidence            999999999999987653

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=99.67  E-value=2.5e-16  Score=107.59  Aligned_cols=73  Identities=18%  Similarity=0.229  Sum_probs=64.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH--HHHHHHHhcCCC-----CCCcEEEECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME--FRDELWSSLSGR-----VIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~--~~~el~~~~g~~-----~~~P~vFI~G~~IGG~de   97 (174)
                      +|+||+++      .||+|++++.+|+.++++|++++|..++.  .+++|.+++| .     .++|+|||||++|||+++
T Consensus         5 ~v~ly~~~------~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g-~~~~~~~~vP~i~i~g~~i~g~~~   77 (89)
T 3msz_A            5 KVKIYTRN------GCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSG-KVIFPISTVPQIFIDDEHIGGFTE   77 (89)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTT-CCSSCCCSSCEEEETTEEEESHHH
T ss_pred             EEEEEEcC------CChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhC-CCCCCCCccCEEEECCEEEeChHH
Confidence            69999997      69999999999999999999998866544  6678888887 7     899999999999999999


Q ss_pred             hhhhhhc
Q 047313           98 VVGLHEQ  104 (174)
Q Consensus        98 l~~l~e~  104 (174)
                      +.+++++
T Consensus        78 i~~~~~~   84 (89)
T 3msz_A           78 LKANADK   84 (89)
T ss_dssp             HHHTHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=99.54  E-value=2.7e-14  Score=101.57  Aligned_cols=70  Identities=26%  Similarity=0.214  Sum_probs=59.2

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC-HH----HHHHHHHhcCCCCCCcEEEECC-EEEec
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH-ME----FRDELWSSLSGRVIPPRLFIKG-RYIGG   94 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~-~~----~~~el~~~~g~~~~~P~vFI~G-~~IGG   94 (174)
                      .++++|+||+++      .||+|.+++.+|+.++++|+++||..+ .+    +.+++.+.+| ..++|+|||+| ++|||
T Consensus        19 ~~~~~v~ly~~~------~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g-~~~vP~l~i~~~~~igg   91 (103)
T 3nzn_A           19 VDRGKVIMYGLS------TCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNP-SVSFPTTIINDEKAIVG   91 (103)
T ss_dssp             BCCSCEEEEECS------SCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCT-TCCSCEEEETTTEEEES
T ss_pred             CCCCeEEEEcCC------CCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCC-CCccCEEEECCCEEEEc
Confidence            456789999998      699999999999999999999999863 33    3444455566 89999999999 99999


Q ss_pred             cch
Q 047313           95 ADE   97 (174)
Q Consensus        95 ~de   97 (174)
                      +++
T Consensus        92 ~~~   94 (103)
T 3nzn_A           92 FKE   94 (103)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            976

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.51  E-value=3.6e-14  Score=127.93  Aligned_cols=86  Identities=17%  Similarity=0.351  Sum_probs=79.4

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      .+++|+||+++      .||+|.+++++|+.++++|+++||..+   +++++++++++| ..++|+|||+|++|||++++
T Consensus        16 ~~~~v~vy~~~------~Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g-~~tvP~v~i~g~~igG~~~l   88 (598)
T 2x8g_A           16 DSAAVILFSKT------TCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSK-IETVPQMFVRGKFIGDSQTV   88 (598)
T ss_dssp             HHCSEEEEECT------TCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHS-CCCSCEEEETTEEEECHHHH
T ss_pred             ccCCEEEEECC------CChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhC-CceeCEEEECCEEEEeeehh
Confidence            45689999998      799999999999999999999999765   778889998888 99999999999999999999


Q ss_pred             hhhhhcCchhHHhhcC
Q 047313           99 VGLHEQGKLKKLLEGI  114 (174)
Q Consensus        99 ~~l~e~G~L~~~L~~~  114 (174)
                      .++++.|+|+++|...
T Consensus        89 ~~~~~~g~L~~~l~~~  104 (598)
T 2x8g_A           89 LKYYSNDELAGIVNES  104 (598)
T ss_dssp             HHHHHTTCHHHHHHCC
T ss_pred             hhhhhcCcchhhcccc
Confidence            9999999999999753

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.51  E-value=3e-14  Score=114.66  Aligned_cols=75  Identities=21%  Similarity=0.327  Sum_probs=67.3

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      +....+|+||+++      .|++|.+|+++|+.++++|+++||..++. +++|.+.+| ..++|+|||+|++|||++++.
T Consensus       166 ~i~~~~i~ly~~~------~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~-~~~l~~~~g-~~~vP~~~~~g~~i~g~~~i~  237 (241)
T 1nm3_A          166 HQVQESISIFTKP------GCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSG-RTTVPQVFIGGKHIGGSDDLE  237 (241)
T ss_dssp             SCCCCCEEEEECS------SCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTC-CSSSCEEEETTEEEESHHHHH
T ss_pred             ccccceEEEEECC------CChHHHHHHHHHHHcCCceEEEECCCchH-HHHHHHHhC-CCCcCEEEECCEEEECHHHHH
Confidence            4677899999997      79999999999999999999999988755 478888887 899999999999999999998


Q ss_pred             hhh
Q 047313          100 GLH  102 (174)
Q Consensus       100 ~l~  102 (174)
                      ++.
T Consensus       238 ~~l  240 (241)
T 1nm3_A          238 KYF  240 (241)
T ss_dssp             HC-
T ss_pred             HHh
Confidence            764

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.50  E-value=8.1e-15  Score=99.29  Aligned_cols=75  Identities=13%  Similarity=0.228  Sum_probs=63.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECCEEEeccchh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G~~IGG~del   98 (174)
                      +|++|+++      .|++|.+++.+|+.     .+++|.++||..++..++++.+.+|. ..++|+||++|++|||++++
T Consensus         2 ~v~~f~~~------~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~~i~~~~~l   75 (85)
T 1ego_A            2 QTVIFGRS------GCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDF   75 (85)
T ss_dssp             EEEEECCT------TSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHH
T ss_pred             EEEEEeCC------CCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCEEEECHHHH
Confidence            58999987      69999999999998     88999999996554444577777753 58999999999999999999


Q ss_pred             hhhhhcC
Q 047313           99 VGLHEQG  105 (174)
Q Consensus        99 ~~l~e~G  105 (174)
                      .++.+++
T Consensus        76 ~~~~~~~   82 (85)
T 1ego_A           76 AAWVKEN   82 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9888765

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.49  E-value=4.3e-14  Score=97.64  Aligned_cols=67  Identities=18%  Similarity=0.185  Sum_probs=58.4

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC-----CHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL-----HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~-----~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      .+|+||+++      .|++|.+++.+|+.++++|+++||..     +++..++|.+.+| ..++|+||++|++|||++.
T Consensus        12 ~~v~ly~~~------~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g-~~~vP~l~~~g~~i~G~~~   83 (92)
T 3ic4_A           12 AEVLMYGLS------TCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISG-SYSVPVVVKGDKHVLGYNE   83 (92)
T ss_dssp             SSSEEEECT------TCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHS-SSCSCEEEETTEEEESCCH
T ss_pred             ceEEEEECC------CChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcC-CCCcCEEEECCEEEeCCCH
Confidence            469999997      69999999999999999999999973     2344578888888 8899999999999999854

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.45  E-value=6.1e-13  Score=89.42  Aligned_cols=76  Identities=13%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~  104 (174)
                      +|++|+++      .|++|.+++.+|+.++++|+++||..+++..+++.+ +| ..++|++|++|+.+||++.       
T Consensus         2 ~v~~f~~~------~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~-~g-~~~vP~~~~~g~~~~g~~~-------   66 (81)
T 1h75_A            2 RITIYTRN------DCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QG-FRQLPVVIAGDLSWSGFRP-------   66 (81)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TT-CCSSCEEEETTEEEESCCH-------
T ss_pred             EEEEEcCC------CChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHH-hC-CCccCEEEECCEEEecCCH-------
Confidence            58999987      699999999999999999999999999888877765 45 8899999999999999863       


Q ss_pred             CchhHHhhcCC
Q 047313          105 GKLKKLLEGIP  115 (174)
Q Consensus       105 G~L~~~L~~~~  115 (174)
                      .+|.++|+...
T Consensus        67 ~~l~~~l~~~~   77 (81)
T 1h75_A           67 DMINRLHPAPH   77 (81)
T ss_dssp             HHHGGGSCCC-
T ss_pred             HHHHHHHhccc
Confidence            24666666543

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.40  E-value=8.8e-13  Score=94.06  Aligned_cols=89  Identities=22%  Similarity=0.397  Sum_probs=76.3

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH---HHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME---FRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~---~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      .++|++|+++      .|++|..++.+|+..++.|..+||..++.   .+.++.+.+| ..++|++|++|+.+|+++.+.
T Consensus        19 ~~~vv~f~a~------~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~-v~~~Pt~~~~g~~v~~~~~~~   91 (116)
T 2e7p_A           19 SAPVVVFSKT------YCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTG-RGTVPNVFIGGKQIGGCDTVV   91 (116)
T ss_dssp             SSSEEEEECT------TCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHS-CCSSCEEEETTEEEECHHHHH
T ss_pred             CCCEEEEECC------CChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhC-CCCcCEEEECCEEECChHHHH
Confidence            4579999988      59999999999999999999999976543   4566777777 889999999999999999999


Q ss_pred             hhhhcCchhHHhhcCCCCC
Q 047313          100 GLHEQGKLKKLLEGIPRNL  118 (174)
Q Consensus       100 ~l~e~G~L~~~L~~~~~~~  118 (174)
                      .++..++|.++|+..++..
T Consensus        92 ~~~~~~~l~~~l~~~g~~~  110 (116)
T 2e7p_A           92 EKHQRNELLPLLQDAAATA  110 (116)
T ss_dssp             HHHHTTCHHHHHHHTTC--
T ss_pred             HHHhCChHHHHHHHccccc
Confidence            9999999999999877643

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.40  E-value=2.1e-12  Score=85.13  Aligned_cols=65  Identities=25%  Similarity=0.364  Sum_probs=58.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      +|++|+++      .|++|.+++.+|+.++++|+.+||..+++..++++. +| ..++|++++||+.++|++.
T Consensus         2 ~i~~y~~~------~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~~-~~-~~~vP~l~~~g~~~~g~~~   66 (75)
T 1r7h_A            2 SITLYTKP------ACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LG-YVQAPVVEVDGEHWSGFRP   66 (75)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TT-CBCCCEEEETTEEEESCCH
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH-cC-CCccCEEEECCeEEcCCCH
Confidence            48999987      699999999999999999999999999888777744 55 8899999999999999863

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.15  E-value=3.9e-11  Score=80.86  Aligned_cols=72  Identities=14%  Similarity=0.034  Sum_probs=56.5

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHH----HHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE--EEeccch
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRF----LLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR--YIGGADE   97 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~----iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~--~IGG~de   97 (174)
                      .+|++|+++      .|++|.+++.    ++++++++|+.+||..+++..+ +.+.+| ..++|+|||||+  ++|+..+
T Consensus         2 ~~~~~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~g-v~~vPt~~i~g~~~~~G~~~~   73 (80)
T 2k8s_A            2 ASKAIFYHA------GCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIA-EAEKAG-VKSVPALVIDGAAFHINFGAG   73 (80)
T ss_dssp             CEEEEEEEC------SCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHH-HHHHHT-CCEEEEEEETTEEEEEEEEEE
T ss_pred             cceEEEeCC------CCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHH-HHHHcC-CCcCCEEEECCEEEEeccCcC
Confidence            468999998      5999999999    6677889999999986533233 334556 889999999999  8898777


Q ss_pred             hhhhhh
Q 047313           98 VVGLHE  103 (174)
Q Consensus        98 l~~l~e  103 (174)
                      ..+|.+
T Consensus        74 ~~~l~~   79 (80)
T 2k8s_A           74 IDDLKG   79 (80)
T ss_dssp             HHHHCC
T ss_pred             HHHhhc
Confidence            766644

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.04  E-value=6.1e-10  Score=80.63  Aligned_cols=68  Identities=9%  Similarity=0.069  Sum_probs=53.1

Q ss_pred             hhHhhCCCCCC-CcEEEEEeecCCCCCCChhHHHHHHHHHh----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--
Q 047313           13 GYEEKCPPGGE-DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--   85 (174)
Q Consensus        13 ~~~~~~~~~~~-~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--   85 (174)
                      ++....+|+.. ..|++|+++      .|++|..++.+|+.    ++|+|+++||+.+++..+    .+| . ++|+|  
T Consensus        18 ~~~~~~~~~~~m~~vv~y~~~------~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l~~----~yg-v-~VP~l~~   85 (107)
T 2fgx_A           18 YFQGHMNNQVEPRKLVVYGRE------GCHLCEEMIASLRVLQKKSWFELEVINIDGNEHLTR----LYN-D-RVPVLFA   85 (107)
T ss_dssp             -----CCCCCCCCCEEEEECS------SCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHHHH----HST-T-SCSEEEE
T ss_pred             cccccCCCCCCccEEEEEeCC------CChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH----HhC-C-CCceEEE
Confidence            45556666654 679999998      59999999999998    899999999998887544    455 4 49999  


Q ss_pred             EECCEEE
Q 047313           86 FIKGRYI   92 (174)
Q Consensus        86 FI~G~~I   92 (174)
                      |+||+.+
T Consensus        86 ~~dG~~v   92 (107)
T 2fgx_A           86 VNEDKEL   92 (107)
T ss_dssp             TTTTEEE
T ss_pred             EECCEEE
Confidence            9999988

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.03  E-value=1e-09  Score=76.24  Aligned_cols=72  Identities=14%  Similarity=0.181  Sum_probs=56.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCc-EEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT-FYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~-~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l~  102 (174)
                      +|++|+++      .|+.|+.++.+|++.++. |.++||+.++++.++    +| .. +|+|+ +||+.++|.-+.    
T Consensus         2 ~vv~f~a~------~C~~C~~~~~~L~~~~~~~~~~vdid~~~~l~~~----~g-~~-vPtl~~~~G~~v~g~~~~----   65 (87)
T 1ttz_A            2 ALTLYQRD------DCHLCDQAVEALAQARAGAFFSVFIDDDAALESA----YG-LR-VPVLRDPMGRELDWPFDA----   65 (87)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHHH----HT-TT-CSEEECTTCCEEESCCCH----
T ss_pred             EEEEEECC------CCchHHHHHHHHHHHHHhheEEEECCCCHHHHHH----hC-CC-cCeEEEECCEEEeCCCCH----
Confidence            58999998      599999999999999997 999999998875544    45 44 99999 899999654222    


Q ss_pred             hcCchhHHhhcC
Q 047313          103 EQGKLKKLLEGI  114 (174)
Q Consensus       103 e~G~L~~~L~~~  114 (174)
                        .+|.++|+..
T Consensus        66 --~~L~~~l~~~   75 (87)
T 1ttz_A           66 --PRLRAWLDAA   75 (87)
T ss_dssp             --HHHHHHHHTC
T ss_pred             --HHHHHHHHHH
Confidence              2455555543

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.01  E-value=9.2e-10  Score=77.78  Aligned_cols=75  Identities=19%  Similarity=0.320  Sum_probs=58.6

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEE--Eeccchh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQ--SFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRY--IGGADEV   98 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~--~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~--IGG~del   98 (174)
                      ...|++|+++      .|++|..++.+|+  ..+++|.++||.. ++. .++.+.+|  .++|+||++|+.  +||++. 
T Consensus        16 ~~~v~~f~~~------~C~~C~~~~~~L~~l~~~i~~~~vdi~~-~~~-~el~~~~g--~~vP~l~~~g~~~~~~g~~~-   84 (100)
T 1wjk_A           16 LPVLTLFTKA------PCPLCDEAKEVLQPYKDRFILQEVDITL-PEN-STWYERYK--FDIPVFHLNGQFLMMHRVNT-   84 (100)
T ss_dssp             CCEEEEEECS------SCHHHHHHHHHTSTTSSSSEEEEEETTS-STT-HHHHHHSS--SSCSEEEESSSEEEESSCCH-
T ss_pred             CCEEEEEeCC------CCcchHHHHHHHHHhhhCCeEEEEECCC-cch-HHHHHHHC--CCCCEEEECCEEEEecCCCH-
Confidence            3478999987      5999999999999  6789999999982 122 55666666  889999999998  788654 


Q ss_pred             hhhhhcCchhHHhhcC
Q 047313           99 VGLHEQGKLKKLLEGI  114 (174)
Q Consensus        99 ~~l~e~G~L~~~L~~~  114 (174)
                            .+|.++|+.+
T Consensus        85 ------~~l~~~l~~~   94 (100)
T 1wjk_A           85 ------SKLEKQLRKL   94 (100)
T ss_dssp             ------HHHHHHHHSS
T ss_pred             ------HHHHHHHHHH
Confidence                  2577777654

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=98.74  E-value=1.1e-08  Score=76.05  Aligned_cols=67  Identities=25%  Similarity=0.351  Sum_probs=53.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc---CC-----------------------
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL---SG-----------------------   78 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~---g~-----------------------   78 (174)
                      .|+||+++      +|++|.+|+++|+++|++|+++||..++..+++|++++   |.                       
T Consensus         2 mi~lY~~~------~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l~~~~~~~~~l~n~~~~~~k~l~~~~~~l   75 (132)
T 1z3e_A            2 MVTLYTSP------SCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILRMTEDGTDEIISTRSKVFQKLNVNVESM   75 (132)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHTCSSCGGGTBCTTSHHHHHHCCCGGGS
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHHHHcCCCHHHhhcCCchHHHhcCcccccC
Confidence            48999997      89999999999999999999999988755555555443   21                       


Q ss_pred             --------------CCCCcEEEECCEEEeccch
Q 047313           79 --------------RVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        79 --------------~~~~P~vFI~G~~IGG~de   97 (174)
                                    -...|.|.++++.+-|++.
T Consensus        76 s~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  108 (132)
T 1z3e_A           76 PLQDLYRLINEHPGLLRRPIIIDEKRLQVGYNE  108 (132)
T ss_dssp             BHHHHHHHHHHCGGGBCSCEEECSSCEEESCCT
T ss_pred             CHHHHHHHHHhCccceeCCEEEECCEEEEcCCH
Confidence                          1368999999998888864

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=98.69  E-value=1.2e-08  Score=84.97  Aligned_cols=67  Identities=21%  Similarity=0.265  Sum_probs=50.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC----CC---cEE--EEE--CCCC----HH---HHHHHHHhcCCCCCC--c
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF----KV---TFY--ERD--VSLH----ME---FRDELWSSLSGRVIP--P   83 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v---~~~--e~D--v~~~----~~---~~~el~~~~g~~~~~--P   83 (174)
                      ..|+|||++      +||+|.+|+++|+++    ++   .|+  ++|  ...|    ++   ..+++.+..| ..++  |
T Consensus        44 ~~VelyTs~------gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G-~~tVyTP  116 (270)
T 2axo_A           44 GVVELFTSQ------GCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALG-RNGVYTP  116 (270)
T ss_dssp             CEEEEEECT------TCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTT-CSCCCSS
T ss_pred             cEEEEEeCC------CCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhC-CCcccCC
Confidence            579999997      899999999999998    77   565  233  1122    22   2334566666 7788  9


Q ss_pred             EEEECCE-EEeccch
Q 047313           84 RLFIKGR-YIGGADE   97 (174)
Q Consensus        84 ~vFI~G~-~IGG~de   97 (174)
                      ||||||+ ++||+|.
T Consensus       117 qI~Ing~~~v~G~d~  131 (270)
T 2axo_A          117 QAILNGRDHVKGADV  131 (270)
T ss_dssp             EEEETTTEEEETTCH
T ss_pred             EEEECCEEeecCCCH
Confidence            9999999 7999974

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=98.69  E-value=1.5e-08  Score=73.50  Aligned_cols=67  Identities=18%  Similarity=0.220  Sum_probs=52.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHhcC---------------C--------
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLS---------------G--------   78 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~---~~~~el~~~~g---------------~--------   78 (174)
                      .|+||+++      +|++|.+|+++|+++||+|+++||..++   +..+++.+.+|               +        
T Consensus         1 ~i~iY~~~------~C~~C~kak~~L~~~gi~~~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~   74 (114)
T 1rw1_A            1 TYVLYGIK------ACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRWCAEHGWQTVLNRAGTTFRKLDEAQKADLD   74 (114)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHHHHHHCHHHHBCTTSHHHHTSCHHHHTTCC
T ss_pred             CEEEEECC------CChHHHHHHHHHHHCCCceEEEeecCCCCCHHHHHHHHHhCChHHhccCCcHhHHhcCccccccCC
Confidence            48999997      8999999999999999999999997543   44444444444               0        


Q ss_pred             -------------CCCCcEEEECCEEEeccch
Q 047313           79 -------------RVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        79 -------------~~~~P~vFI~G~~IGG~de   97 (174)
                                   -...|.|.++++.+-|++.
T Consensus        75 ~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  106 (114)
T 1rw1_A           75 EAKAIELMLAQPSMIKRPVLELGGRTLVGFKP  106 (114)
T ss_dssp             HHHHHHHHHHCGGGBCSCEEECSSCEEESCCH
T ss_pred             HHHHHHHHHhChhheeCcEEEECCEEEEeCCH
Confidence                         2357999999998888865

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=98.67  E-value=2.6e-08  Score=72.79  Aligned_cols=67  Identities=19%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHhcC---------------C--------
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLS---------------G--------   78 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~---~~~~el~~~~g---------------~--------   78 (174)
                      .|+||+++      .|++|.+|+++|+++||+|+++||..++   +..+++.+.+|               +        
T Consensus         6 ~i~iY~~~------~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g~~~l~n~~~~~~k~l~~~~~~~~~   79 (120)
T 2kok_A            6 SVTIYGIK------NCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVPWEQLLNRAGTTFRKLPEDVRSNVD   79 (120)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSCGGGTBCSSSHHHHHSCHHHHHSCC
T ss_pred             EEEEEECC------CChHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcChHhhccCCchhhHhcCchhhccCC
Confidence            59999997      7999999999999999999999996543   55555555555               0        


Q ss_pred             -------------CCCCcEEEECCEEEeccch
Q 047313           79 -------------RVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        79 -------------~~~~P~vFI~G~~IGG~de   97 (174)
                                   -...|.|.++++.+-|++.
T Consensus        80 ~~~~~~~l~~~p~likrPiv~~~~~~~vGf~~  111 (120)
T 2kok_A           80 AASARELMLAQPSMVKRPVLERDGKLMVGFKP  111 (120)
T ss_dssp             HHHHHHHHHHCGGGBCSSEEEETTEEEECCCH
T ss_pred             HHHHHHHHHhCcccEECCEEEECCEEEEeCCH
Confidence                         2357999999999888865

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=98.30  E-value=4e-07  Score=66.61  Aligned_cols=46  Identities=30%  Similarity=0.449  Sum_probs=40.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      |+||+++      .|++|.+|+++|+++||+|+++||..++..+++|.++++
T Consensus         2 i~iY~~~------~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~   47 (120)
T 3l78_A            2 VTLFLSP------SCTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILS   47 (120)
T ss_dssp             EEEEECS------SCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred             EEEEeCC------CCHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHh
Confidence            7899997      799999999999999999999999887666667766654

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=98.24  E-value=2.2e-07  Score=70.04  Aligned_cols=47  Identities=13%  Similarity=0.027  Sum_probs=40.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      .|+||+++      +|++|++++++|+++||+|+++|+..++..+++|.++++
T Consensus         3 ~itiY~~p------~C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~~   49 (141)
T 1s3c_A            3 NITIYHNP------ASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIA   49 (141)
T ss_dssp             CCEEECCT------TCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHH
T ss_pred             cEEEEECC------CChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHhc
Confidence            58999997      899999999999999999999999887666666665543

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=98.23  E-value=6.7e-07  Score=65.53  Aligned_cols=46  Identities=13%  Similarity=0.192  Sum_probs=40.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      .|+||+++      .|+.|++++++|+++||+|+++||..++..+++|.++.
T Consensus         5 ~i~iY~~p------~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l   50 (120)
T 3gkx_A            5 KTLFLQYP------ACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWI   50 (120)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHH
T ss_pred             EEEEEECC------CChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHH
Confidence            48999997      89999999999999999999999988866666666654

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=98.22  E-value=5.9e-07  Score=65.84  Aligned_cols=47  Identities=15%  Similarity=0.225  Sum_probs=40.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      -|+||+++      .|+.|++++++|+++||+|+++|+..++..+++|.++.+
T Consensus         4 Mi~iY~~~------~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~   50 (120)
T 3fz4_A            4 MLTFYEYP------KCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWLE   50 (120)
T ss_dssp             SEEEEECS------SCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHHH
Confidence            48999997      899999999999999999999999888766677666653

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=98.18  E-value=6.3e-07  Score=65.75  Aligned_cols=47  Identities=17%  Similarity=0.023  Sum_probs=40.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      .|+||+++      .|+.|++|+++|+++||+|+++||..++..+++|.++.+
T Consensus         6 ~i~iY~~p------~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~   52 (121)
T 3rdw_A            6 DVTIYHNP------RCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQ   52 (121)
T ss_dssp             CCEEECCT------TCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHH
T ss_pred             cEEEEECC------CCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHH
Confidence            59999997      899999999999999999999999987666666665543

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=97.98  E-value=1e-06  Score=64.50  Aligned_cols=46  Identities=17%  Similarity=0.078  Sum_probs=37.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      .|+||+++      .|+.|++++++|+++|++|+++|+..++..+++|.++.
T Consensus         5 ~i~iY~~p------~C~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l   50 (119)
T 3f0i_A            5 SVVIYHNP------KCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLY   50 (119)
T ss_dssp             CCEEECCT------TCHHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHH
T ss_pred             EEEEEECC------CChHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHH
Confidence            48999997      89999999999999999999999976544444544443

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=97.96  E-value=6.4e-06  Score=58.38  Aligned_cols=70  Identities=14%  Similarity=0.105  Sum_probs=52.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH--HHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME--FRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~--~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .||.|+++|      |+.|..+..+|+...-.|..+|+..+..  ...++.+.++ ...+|+++|+|+.+.|......|
T Consensus        15 ~vV~F~A~W------C~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~~-V~~~PT~~i~G~~~~G~~~~~~l   86 (106)
T 3kp8_A           15 GGTMYGAYW------CPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAG-ITSYPTWIINGRTYTGVRSLEAL   86 (106)
T ss_dssp             TCEEEECTT------CHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHTT-CCSSSEEEETTEEEESCCCHHHH
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHcC-CeEeCEEEECCEEecCCCCHHHH
Confidence            488888885      9999999999998776676788873321  2234555666 88999999999988777654433

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=97.95  E-value=4.1e-06  Score=55.15  Aligned_cols=59  Identities=17%  Similarity=0.282  Sum_probs=46.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE--EEec
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR--YIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~--~IGG   94 (174)
                      .|++|+++      .|++|.++...|+..      ++.|..+|+..+++    +.+.+| ...+|+++++|+  +.|.
T Consensus         4 ~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~G~~~~~G~   70 (85)
T 1nho_A            4 NIEVFTSP------TCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYG-LMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CEEEESCS------SSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTC-SSCSSEEEETTTEEEECS
T ss_pred             EEEEEECC------CCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHhCC-ceeeCEEEECCEEEEccC
Confidence            68888887      599999999888762      68999999987764    444556 788999999998  5554

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=97.79  E-value=1.4e-05  Score=66.97  Aligned_cols=71  Identities=14%  Similarity=0.080  Sum_probs=52.4

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC-CH-HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL-HM-EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~-~~-~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ..||+|+++|      |++|++++.+|++..-.+..+|+.. |. +...++.+..+ ...+|++|+||+.+.|..+..+|
T Consensus       199 ~~vV~F~A~W------C~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~g-I~~vPT~~i~G~~~~G~~~~~~L  271 (291)
T 3kp9_A          199 IGGTMYGAYW------CPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAG-ITSYPTWIINGRTYTGVRSLEAL  271 (291)
T ss_dssp             TTCEEEECTT------CHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTT-CCSTTEEEETTEEEESCCCHHHH
T ss_pred             CCEEEEECCC------CHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcC-CcccCeEEECCEEecCCCCHHHH
Confidence            4589999985      9999999999998654455666652 21 21344556666 88999999999998888765444

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=97.71  E-value=4.1e-05  Score=59.37  Aligned_cols=71  Identities=13%  Similarity=0.148  Sum_probs=56.1

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGLH  102 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l~  102 (174)
                      ++++||+.+      .||+|.+++.+|+.+|++|+.++|......  ...++.+ ..++|.|. .+|..|.+...+.+..
T Consensus         2 ~~~~Ly~~~------~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~--~~~~~~p-~~~vP~l~~~~g~~l~eS~aI~~yL   72 (218)
T 3ir4_A            2 NAMKLYIYD------HCPFCVKARMIFGLKNIPVELNVLQNDDEA--TPTRMIG-QKMVPILQKDDSRYLPESMDIVHYV   72 (218)
T ss_dssp             CCCEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTCCH--HHHHHHS-SSCSCEEECTTSCEEECHHHHHHHH
T ss_pred             CeEEEEcCC------CCchHHHHHHHHHHcCCceEEEECCCcchh--hhhhcCC-CceeeeEEEeCCeEeeCHHHHHHHH
Confidence            578999987      699999999999999999999988654321  2345555 88999999 8898888777766554


Q ss_pred             h
Q 047313          103 E  103 (174)
Q Consensus       103 e  103 (174)
                      +
T Consensus        73 ~   73 (218)
T 3ir4_A           73 D   73 (218)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=97.60  E-value=9.1e-05  Score=58.27  Aligned_cols=74  Identities=15%  Similarity=0.114  Sum_probs=58.0

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchh
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEV   98 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del   98 (174)
                      +..+++++||+..      .|++|.+++.+|+.+|++|+.+.|.... ..+++.++.. ...+|.|.+ +|..|.....+
T Consensus        18 ~~~~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~P-~g~vP~L~~~~g~~l~eS~aI   89 (241)
T 3vln_A           18 PVPEGSIRIYSMR------FSPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNP-FGLVPVLENSQGQLIYESAIT   89 (241)
T ss_dssp             CCCTTCEEEEECT------TCHHHHHHHHHHHHHTCCEEEEEBCTTS-CCTTHHHHCT-TCCSCEEECTTCCEEESHHHH
T ss_pred             CCCCCeEEEEcCC------CCcHHHHHHHHHHHcCCCCeEEecCccc-CCHHHHHhCC-CCCCCEEEECCCcEEEcHHHH
Confidence            4667899999987      6899999999999999999999886532 1233555555 678999999 88888776665


Q ss_pred             hhh
Q 047313           99 VGL  101 (174)
Q Consensus        99 ~~l  101 (174)
                      .+.
T Consensus        90 ~~y   92 (241)
T 3vln_A           90 CEY   92 (241)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=97.58  E-value=0.00015  Score=57.73  Aligned_cols=79  Identities=14%  Similarity=0.125  Sum_probs=51.3

Q ss_pred             CCcEEEEEeecCC--CCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           23 EDSVIFYTTSLRG--IRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        23 ~~~VvlYttsl~~--ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      ...++||...-+.  ....||+|.+++.+|..+||+|+.+.|... ....++.++.. ..++|.|..+|..|.....+.+
T Consensus        11 ~~~i~ly~~~~~~~~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP-~g~vP~L~~~g~~l~ES~aI~~   88 (247)
T 2r4v_A           11 DPEIELFVKAGSDGESIGNCPFCQRLFMILWLKGVKFNVTTVDMT-RKPEELKDLAP-GTNPPFLVYNKELKTDFIKIEE   88 (247)
T ss_dssp             CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECCC-----------C-CSSSCEEEETTEEECCHHHHHH
T ss_pred             CCCEEEEEecCcccccCCCChhHHHHHHHHHHcCCCcEEEEcCcc-cchHHHHHhCC-CCCCCEEEECCEeccCHHHHHH
Confidence            3469999321000  013799999999999999999999888654 22345555554 6799999999998877766655


Q ss_pred             hhh
Q 047313          101 LHE  103 (174)
Q Consensus       101 l~e  103 (174)
                      ..+
T Consensus        89 YL~   91 (247)
T 2r4v_A           89 FLE   91 (247)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=97.57  E-value=2.5e-05  Score=51.25  Aligned_cols=56  Identities=13%  Similarity=0.210  Sum_probs=43.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRY   91 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~   91 (174)
                      .|++|+++      .|++|.++...|+.    +  ++.+..+|+..+++    +.+.+| ...+|+++++|+.
T Consensus         5 ~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~G~~   66 (85)
T 1fo5_A            5 KIELFTSP------MCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ----KAMEYG-IMAVPTIVINGDV   66 (85)
T ss_dssp             EEEEEECC------CSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC----TTTSTT-TCCSSEEEETTEE
T ss_pred             EEEEEeCC------CCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHH----HHHHCC-CcccCEEEECCEE
Confidence            57888887      59999999888876    2  68899999977653    334445 7789999999984

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=97.54  E-value=0.00013  Score=59.29  Aligned_cols=82  Identities=12%  Similarity=0.080  Sum_probs=57.0

Q ss_pred             CCCCCcEEEEEeecCC--CCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           20 PGGEDSVIFYTTSLRG--IRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~--ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      |.+...|+||.+..+.  ....||+|.+++.+|+.+||+|+.+.|.... ...++.++.. ...+|.|..+|..|.....
T Consensus        13 ~~~~~~i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP-~gkVPvL~~~g~~l~ES~a   90 (267)
T 2ahe_A           13 EDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKR-KPADLQNLAP-GTHPPFITFNSEVKTDVNK   90 (267)
T ss_dssp             ---CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHST-TCCSCEEEETTEEECCHHH
T ss_pred             cccCCCEEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCccc-ChHHHHHhCC-CCCCCEEEECCEEecCHHH
Confidence            3455679999533210  1237999999999999999999988886431 1234556654 6789999999998877766


Q ss_pred             hhhhhh
Q 047313           98 VVGLHE  103 (174)
Q Consensus        98 l~~l~e  103 (174)
                      +.+..+
T Consensus        91 I~~YL~   96 (267)
T 2ahe_A           91 IEEFLE   96 (267)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A*

Probab=97.53  E-value=0.00024  Score=55.30  Aligned_cols=73  Identities=16%  Similarity=0.129  Sum_probs=57.2

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH----HHHHHHHHhcCCCCCCcEEEECCEEEeccchh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM----EFRDELWSSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~----~~~~el~~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      .++++||+..      .|++|.+++.+|..+||+|+.+.|....    ....++.++.. ..++|.|..+|..|.....|
T Consensus        10 ~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI   82 (223)
T 2cz2_A           10 AGKPILYSYF------RSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNP-MKQVPALKIDGITIVQSLAI   82 (223)
T ss_dssp             -CCCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCT-TCCSCEEEETTEEEESHHHH
T ss_pred             cCceEEEecC------CCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCC-CCCCCEEEECCEEEeeHHHH
Confidence            3579999976      6899999999999999999999987542    23456666655 77999999999988877666


Q ss_pred             hhhh
Q 047313           99 VGLH  102 (174)
Q Consensus        99 ~~l~  102 (174)
                      .+..
T Consensus        83 ~~yL   86 (223)
T 2cz2_A           83 MEYL   86 (223)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=97.48  E-value=0.00025  Score=56.26  Aligned_cols=71  Identities=10%  Similarity=0.131  Sum_probs=55.9

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCE---EEeccchh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGR---YIGGADEV   98 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~---~IGG~del   98 (174)
                      +++++||+.+      .|++|.+++.+|+.+||+|+.+.|.... ..+++.++.. ..++|.|.+ +|.   .|.....+
T Consensus        24 ~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP-~g~vP~L~~~~g~~~~~l~eS~aI   95 (246)
T 3rbt_A           24 TDKLRLYHVD------MNPYGHRVLLVLEAKRIKYEVYRLDPLR-LPEWFRAKNP-RLKIPVLEIPTDQGDRFLFESVVI   95 (246)
T ss_dssp             CSSEEEEECT------TCHHHHHHHHHHHHTTBCEEEEECCSSS-CCHHHHHHCT-TCBSCEEEECCTTSCEEECCHHHH
T ss_pred             CCceEEEecC------CCccHHHHHHHHHHcCCCceEEEeCccc-CCHHHHHhCC-CCCCCEEEecCCCCceeeeCHHHH
Confidence            7899999987      6899999999999999999999886542 2334666665 679999999 787   77665555


Q ss_pred             hhh
Q 047313           99 VGL  101 (174)
Q Consensus        99 ~~l  101 (174)
                      .+.
T Consensus        96 ~~y   98 (246)
T 3rbt_A           96 CDY   98 (246)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=97.47  E-value=0.0002  Score=55.25  Aligned_cols=68  Identities=15%  Similarity=0.153  Sum_probs=52.4

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++||+..      +||+|++|+-+|..+||+|+.+.|..... .+++.++.. ...+|.+..||..|.....+.+.
T Consensus         4 m~LY~~~------~sP~~~rvr~~L~e~gi~~e~~~v~~~~~-~~~~~~~nP-~g~vPvL~~~~~~l~ES~aI~~y   71 (210)
T 4hoj_A            4 MTLYSGI------TCPFSHRCRFVLYEKGMDFEIKDIDIYNK-PEDLAVMNP-YNQVPVLVERDLVLHESNIINEY   71 (210)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHCT-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEEecCC------CChHHHHHHHHHHHcCCCCEEEEeCCCCC-CHHHHHHCC-CCCCcEEEECCEEEeccHHHHHH
Confidence            6799986      79999999999999999999888753211 235666654 77899999999888766555444

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=97.46  E-value=0.00046  Score=48.51  Aligned_cols=59  Identities=20%  Similarity=0.326  Sum_probs=43.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG   94 (174)
                      -|+.|+++      .|+.|..+...|+..     ++.|..+|+..++++.    +.++ ...+|.+++  +|+.++-
T Consensus        33 vvv~F~a~------wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~l~----~~~~-v~~~Pt~~~~~~G~~~~~   98 (114)
T 2oe3_A           33 LVIDFYAT------WCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPDIA----KECE-VTAMPTFVLGKDGQLIGK   98 (114)
T ss_dssp             EEEEEECT------TCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHHH----HHTT-CCSBSEEEEEETTEEEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHH----HHCC-CCcccEEEEEeCCeEEEE
Confidence            35555555      599999998888764     5899999998876543    4445 778999876  8887543

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=97.46  E-value=0.00013  Score=59.15  Aligned_cols=74  Identities=11%  Similarity=0.165  Sum_probs=52.1

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhh
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVG  100 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~  100 (174)
                      ..+.++||+.+      .||+|++|+-+|..+||+|+.+.|.....--+.+....+....+|.|.+ ||..|.....|.+
T Consensus         3 ~p~~~~LY~~~------~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~nP~g~VPvL~~d~g~~l~ES~aI~~   76 (265)
T 4g10_A            3 EPQELTIYHIP------GCPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESMVILR   76 (265)
T ss_dssp             CCCCCEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHTSCCCSCEEECTTSCEEECHHHHHH
T ss_pred             CCCceEEEecC------CChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcCCCCccceEEECCCeEEeccHHHHH
Confidence            45679999987      7999999999999999999988875321111233332333678999987 6777765555544


Q ss_pred             h
Q 047313          101 L  101 (174)
Q Consensus       101 l  101 (174)
                      .
T Consensus        77 Y   77 (265)
T 4g10_A           77 Y   77 (265)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=97.46  E-value=0.00014  Score=57.17  Aligned_cols=74  Identities=12%  Similarity=0.069  Sum_probs=57.0

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchh
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEV   98 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del   98 (174)
                      |..+++++||+..      .|++|.+++.+|+.+||+|+.+.|.... ...++.++.. ..++|.|.+ +|..|.....+
T Consensus        18 ~~~~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~nP-~g~vP~L~~~~g~~l~eS~aI   89 (239)
T 3q18_A           18 PVPEGLIRIYSMR------FCPYSHRTRLVLKAKDIRHEVVNINLRN-KPEWYYTKHP-FGHIPVLETSQSQLIYESVIA   89 (239)
T ss_dssp             CCCTTCEEEEECT------TCHHHHHHHHHHHHTTCCEEEEEBCSSS-CCGGGGGTST-TCCSCEEECTTCCEECSHHHH
T ss_pred             CCCCCeEEEEeCC------CChHHHHHHHHHHHcCCCcEEEecCccc-CCHHHHhcCC-CCCCCEEEeCCCceeecHHHH
Confidence            4667899999986      6899999999999999999999886532 1223445544 678999999 88877766655


Q ss_pred             hhh
Q 047313           99 VGL  101 (174)
Q Consensus        99 ~~l  101 (174)
                      .+.
T Consensus        90 ~~y   92 (239)
T 3q18_A           90 CEY   92 (239)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A

Probab=97.45  E-value=0.00031  Score=56.08  Aligned_cols=79  Identities=13%  Similarity=0.093  Sum_probs=51.0

Q ss_pred             CCCcEEEEEeecCC--CCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           22 GEDSVIFYTTSLRG--IRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        22 ~~~~VvlYttsl~~--ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      .+..|.||.+.-+.  ....||+|.+++.+|+.+||+|+.+.|... ....++.++.. ..++|.|.+||..|.....+.
T Consensus        22 ~~~~i~l~~ka~~~~~s~~~sP~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP-~g~VPvL~~dg~~l~ES~aI~   99 (250)
T 3fy7_A           22 AETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTR-RSPDVLKDFAP-GSQLPILLYDSDAKTDTLQIE   99 (250)
T ss_dssp             ---CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEEC----------------CCSCEEEETTEEECCHHHHH
T ss_pred             cCCCceEEEEeCCCCCCCCCChHHHHHHHHHHHcCCccEEEECCCc-cChHHHHhhCC-CCCCCEEEECCEEecCHHHHH
Confidence            45689999986442  225799999999999999999998888654 23345666654 678999999999887766665


Q ss_pred             hhh
Q 047313          100 GLH  102 (174)
Q Consensus       100 ~l~  102 (174)
                      +..
T Consensus       100 ~YL  102 (250)
T 3fy7_A          100 DFL  102 (250)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=97.45  E-value=0.00032  Score=54.29  Aligned_cols=73  Identities=14%  Similarity=0.081  Sum_probs=56.1

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      .++++||+..      .+++|.+++.+|+.+|++|+.+.|...  .....++.+... ..++|.|..+|..|.....+.+
T Consensus         6 ~~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~   78 (221)
T 1e6b_A            6 EEKLKLYSYW------RSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINP-MGTVPALVDGDVVINDSFAIIM   78 (221)
T ss_dssp             --CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCT-TCCSSEEEETTEEEESHHHHHH
T ss_pred             CCCeEEEecC------CCCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhCC-CCCCCEEEECCEEEeeHHHHHH
Confidence            3568999976      689999999999999999999988643  223355666655 7799999999998887766655


Q ss_pred             hh
Q 047313          101 LH  102 (174)
Q Consensus       101 l~  102 (174)
                      ..
T Consensus        79 yL   80 (221)
T 1e6b_A           79 YL   80 (221)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.44  E-value=0.00045  Score=48.01  Aligned_cols=74  Identities=23%  Similarity=0.412  Sum_probs=52.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe---
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG---   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG---   93 (174)
                      ..|+.|+++      .|++|..+...|+..     ++.+..+|+..+++    +.+.++ ...+|++++  +|+.+.   
T Consensus        21 ~~vv~f~a~------wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~G~~v~~~~   89 (110)
T 2l6c_A           21 DAIVFFHKN------LCPHCKNMEKVLDKFGARAPQVAISSVDSEARPE----LMKELG-FERVPTLVFIRDGKVAKVFS   89 (110)
T ss_dssp             EEEEEEECS------SCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHH----HHHHTT-CCSSCEEEEEESSSEEEEEE
T ss_pred             CEEEEEECC------CCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHH----HHHHcC-CcccCEEEEEECCEEEEEEc
Confidence            356667766      599999999988763     47789999976655    444556 788999987  998776   


Q ss_pred             ccchhhhhhhcCchhHHhhcC
Q 047313           94 GADEVVGLHEQGKLKKLLEGI  114 (174)
Q Consensus        94 G~del~~l~e~G~L~~~L~~~  114 (174)
                      |+-..      .+|.++|+..
T Consensus        90 G~~~~------~~l~~~~~~~  104 (110)
T 2l6c_A           90 GIMNP------RELQALYASI  104 (110)
T ss_dssp             SCCCH------HHHHHHHHTC
T ss_pred             CCCCH------HHHHHHHHHH
Confidence            43222      2466666654

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=97.44  E-value=0.00043  Score=61.32  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEecc-
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGA-   95 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~-   95 (174)
                      ....|++|+++      .|++|..+..+|+..     +|.+..+|+...++    +.+.++ ..++|++||||+.++.. 
T Consensus       117 ~~~~i~~f~a~------~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~~----~~~~~~-i~svPt~~i~g~~~~~G~  185 (521)
T 1hyu_A          117 GDFEFETYYSL------SCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN----EITERN-VMGVPAVFVNGKEFGQGR  185 (521)
T ss_dssp             SCEEEEEEECT------TCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTT-CCSSSEEEETTEEEEESC
T ss_pred             CCcceEEEECC------CCcCcHHHHHHHHHHHhHcCceEEEEEechhhHH----HHHHhC-CCccCEEEECCEEEecCC
Confidence            34579999998      599999998888652     57788999976655    455556 88999999999988543 


Q ss_pred             ---chhhhhhhcCch
Q 047313           96 ---DEVVGLHEQGKL  107 (174)
Q Consensus        96 ---del~~l~e~G~L  107 (174)
                         +++.++.+.+.+
T Consensus       186 ~~~~~l~~~l~~~~~  200 (521)
T 1hyu_A          186 MTLTEIVAKVDTGAE  200 (521)
T ss_dssp             CCHHHHHHHHCCSSC
T ss_pred             CCHHHHHHHHhhccc
Confidence               455555555543

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=97.43  E-value=0.00023  Score=54.29  Aligned_cols=72  Identities=8%  Similarity=-0.044  Sum_probs=56.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .++||+.+      .|++|.+++.+|..+||+|+.+.+....  ....++.+... ..++|.+..+|..|.....+.+..
T Consensus         2 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   74 (209)
T 1axd_A            2 PMKLYGAV------MSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNP-FGQVPALQDGDLYLFESRAICKYA   74 (209)
T ss_dssp             CEEEESCT------TCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCT-TCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEeCC------CCchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhCc-CCCCCeEEECCEEEecHHHHHHHH
Confidence            47899986      6899999999999999999999886532  23345655554 679999999999998877766543


Q ss_pred             h
Q 047313          103 E  103 (174)
Q Consensus       103 e  103 (174)
                      +
T Consensus        75 ~   75 (209)
T 1axd_A           75 A   75 (209)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A

Probab=97.40  E-value=0.0002  Score=55.34  Aligned_cols=70  Identities=13%  Similarity=0.017  Sum_probs=53.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.|... ....++.++.. ..++|.|..+|..|.....+.+..
T Consensus         8 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   77 (215)
T 3lyp_A            8 RLACYSDP------ADHYSHRVRIVLAEKGVSAEIISVEAG-RQPPKLIEVNP-YGSLPTLVDRDLALWESTVVMEYL   77 (215)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHHTCCCEEEECC----CCHHHHHHCT-TCCSSEEECC-CEEESHHHHHHHH
T ss_pred             CeEEEeCC------CCchHHHHHHHHHHCCCCcEEEecCcc-cccHHHHHHCC-CCCcCeEEECCEEeecHHHHHHHH
Confidence            79999987      689999999999999999999988654 23355666665 789999999998887766655443

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis}

Probab=97.37  E-value=0.00035  Score=53.93  Aligned_cols=71  Identities=11%  Similarity=0.072  Sum_probs=55.5

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ..++||+..      .|++|.+++.+|..+||+|+.+.+... ....++.++.. ..++|.|..+|..|.....+.+..
T Consensus         9 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   79 (213)
T 1yy7_A            9 SVMTLFSGP------TDIFSHQVRIVLAEKGVSVEIEQVEAD-NLPQDLIDLNP-YRTVPTLVDRELTLYESRIIMEYL   79 (213)
T ss_dssp             SSEEEEECT------TCHHHHHHHHHHHHHTCCEEEEECCTT-SCCHHHHHHCT-TCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEcCC------CChhHHHHHHHHHHcCCCCeEEeCCcc-cCcHHHHHHCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence            468999986      689999999999999999999998642 12245556654 678999999998887776665543

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=97.36  E-value=0.00078  Score=54.01  Aligned_cols=57  Identities=11%  Similarity=0.045  Sum_probs=45.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I   92 (174)
                      .|++|+++|      |++|..+..+|+.          .+|.+..+|++.+++.    .+.++ ..++|++||+|+.+
T Consensus       141 ~vv~F~a~w------C~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~-V~~vPt~~i~G~~~  207 (243)
T 2hls_A          141 HIETIITPS------CPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPDI----ADKYG-VMSVPSIAINGYLV  207 (243)
T ss_dssp             EEEEEECSS------CSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHHH----HHHTT-CCSSSEEEETTEEE
T ss_pred             EEEEEECCC------CCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHHH----HHHcC-CeeeCeEEECCEEE
Confidence            466788874      9999999999875          4688999999887654    33455 78999999999843

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.36  E-value=0.0028  Score=44.36  Aligned_cols=70  Identities=14%  Similarity=0.239  Sum_probs=47.9

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|.+..-..+..-|+.|+++      .|+.|..+...|+.      .++.|..+|+..+++    +.+.++ ...+|.++
T Consensus        22 ~f~~~v~~~~k~vlv~f~a~------~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~~-v~~~Pt~~   90 (119)
T 1w4v_A           22 DFQDRVVNSETPVVVDFHAQ------WCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD----LAIEYE-VSAVPTVL   90 (119)
T ss_dssp             HHHHHTTTCSSCEEEEEECT------TCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHH----HHHHTT-CCSSSEEE
T ss_pred             hHHHHHHcCCCcEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHH----HHHHcC-CCcccEEE
Confidence            45554422333445556655      59999998887764      258899999987765    444456 78899998


Q ss_pred             E--CCEEEe
Q 047313           87 I--KGRYIG   93 (174)
Q Consensus        87 I--~G~~IG   93 (174)
                      +  +|+.+.
T Consensus        91 ~~~~G~~~~   99 (119)
T 1w4v_A           91 AMKNGDVVD   99 (119)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCcEEE
Confidence            7  998654

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=97.35  E-value=0.00049  Score=54.32  Aligned_cols=72  Identities=15%  Similarity=0.168  Sum_probs=56.7

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      ..+++||+.+      .+++|.+++.+|+.+||+|+.+.|...  .....++.++.. ..++|.|..+|..|.....+.+
T Consensus        24 ~~~~~Ly~~~------~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP-~g~vPvL~~~g~~l~eS~aI~~   96 (243)
T 3qav_A           24 TSKPFVYWGS------GSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNP-RGQVPTFTDGDVVVNESTAICM   96 (243)
T ss_dssp             -CCCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHCT-TCCSCEEEETTEEECSHHHHHH
T ss_pred             cCccEEEeCC------CCcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCC-CCCCCEEEECCEEEecHHHHHH
Confidence            3579999987      689999999999999999998888643  333456666665 7799999999988877666654


Q ss_pred             h
Q 047313          101 L  101 (174)
Q Consensus       101 l  101 (174)
                      .
T Consensus        97 Y   97 (243)
T 3qav_A           97 Y   97 (243)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=97.34  E-value=0.00096  Score=51.11  Aligned_cols=70  Identities=17%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH-MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~-~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ++||+.+      .+++|.+++.+|+.+||+|+.+.+... .+...++.+... ..++|.+..||..|.....+.+..
T Consensus         1 ~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~yL   71 (210)
T 1v2a_A            1 MDYYYSL------ISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNP-QHTIPTLVDNGHVVWESYAIVLYL   71 (210)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCT-TCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CeEEeCC------CCccHHHHHHHHHHcCCCcEEEECCcccchhhHHHHHhCC-CCCcCeEEECCEEEEcHHHHHHHH
Confidence            4688876      689999999999999999999888653 223367777765 778999999999888776665543

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=97.32  E-value=0.00024  Score=54.33  Aligned_cols=71  Identities=10%  Similarity=0.007  Sum_probs=54.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .|++|.+++.+|+.+||+|+.+.|....  ....++.++.. ..++|.|..+|..|.....+.+..
T Consensus         2 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   74 (211)
T 1gnw_A            2 GIKVFGHP------ASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNP-FGQVPAFEDGDLKLFESRAITQYI   74 (211)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCT-TCCSCEEEETTEEEECHHHHHHHH
T ss_pred             eeEEEeCC------CCcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhCC-CCCCCEEEECCEEEeCHHHHHHHH
Confidence            57899986      6899999999999999999998886432  12234445444 678999999999888776665543

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5

Probab=97.32  E-value=0.00015  Score=55.75  Aligned_cols=71  Identities=10%  Similarity=0.014  Sum_probs=54.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .|++|.+++.+|..+||+|+.+.+....  ....++.+... ..++|.|..+|..|.....+.+..
T Consensus         2 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   74 (216)
T 1aw9_A            2 PLKLYGMP------LSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNP-FGQIPALVDGDEVLFESRAINRYI   74 (216)
T ss_dssp             CEEEESCT------TCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCT-TCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEecC------CCccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhCC-CCCcCEEEECCEEeeCHHHHHHHH
Confidence            57899986      6899999999999999999999886432  11233444444 679999999999888777666543

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=97.30  E-value=0.00045  Score=53.99  Aligned_cols=72  Identities=8%  Similarity=0.068  Sum_probs=55.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .-++||+.+      .+++|.+++.+|+.+||+|+.+.|...  .....++.++.. ..++|.|.+||..|.....+.+.
T Consensus        22 ~m~~Ly~~~------~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~y   94 (229)
T 4iel_A           22 SMLHILGKI------PSINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALNP-NGLVPVIKDDGFVLWESNTIIRY   94 (229)
T ss_dssp             CCEEEESCT------TCHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTCT-TCCSCEEEETTEEEECHHHHHHH
T ss_pred             ceEEEecCC------CCcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcCC-CCCCCEEEECCEEEEeHHHHHHH
Confidence            358999886      689999999999999999999988643  233456666655 77899999999998877666555


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        95 L   95 (229)
T 4iel_A           95 L   95 (229)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=97.30  E-value=0.00051  Score=53.10  Aligned_cols=70  Identities=11%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .++||+.+      .|++|.+++.+|..+||+|+.+.|... ....++.++.. ..++|.|..+|..|.....+.+..
T Consensus         6 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   75 (216)
T 3lyk_A            6 VMTLFSNK------DDIYCHQVKIVLAEKGVLYENAEVDLQ-ALPEDLMELNP-YGTVPTLVDRDLVLFNSRIIMEYL   75 (216)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHCT-TCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEeCC------CChhHHHHHHHHHHcCCCcEEEeCCcc-cCcHHHHhhCC-CCCcCeEEECCeEecCHHHHHHHH
Confidence            48999987      689999999999999999999988654 12345666655 779999999999887776665543

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...

Probab=97.30  E-value=0.00078  Score=51.70  Aligned_cols=71  Identities=13%  Similarity=0.052  Sum_probs=55.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .+++|.+++.+|+..||+|+.+.|........++..... ..++|.|..+|..|.....+.+..
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   73 (210)
T 2a2r_A            3 PYTVVYFP------VRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCL-YGQLPKFQDGDLTLYQSNTILRHL   73 (210)
T ss_dssp             SEEEEECS------SSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHST-TSCSCEEEETTEEEECHHHHHHHH
T ss_pred             ceEEEEeC------CcchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCCC-CCCCCEEEECCEEEeeHHHHHHHH
Confidence            57899976      589999999999999999999998643222335666654 678999999998887776665543

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=97.30  E-value=0.00074  Score=51.29  Aligned_cols=70  Identities=11%  Similarity=0.100  Sum_probs=55.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      +++||+.+      .+++|.+++.+|..+||+|+.+.+..+  ...++.+... ..++|.+..+|..|.....+.+..+
T Consensus         2 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL~   71 (198)
T 2cvd_A            2 NYKLTYFN------MRGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTLP-FGKIPILEVDGLTLHQSLAIARYLT   71 (198)
T ss_dssp             CEEEEEES------SSGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTST-TSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CcEEEEcC------CCchHHHHHHHHHHcCCCceEEEeCHH--HHHHhccCCC-CCCCCEEEECCEEEecHHHHHHHHH
Confidence            57899986      589999999999999999999888652  2455666554 6789999999998887776666544

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5

Probab=97.29  E-value=0.00064  Score=53.18  Aligned_cols=72  Identities=17%  Similarity=0.101  Sum_probs=54.9

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCC-CCCcEEEECCEEEeccchhhhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR-VIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~-~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ..+++||+..      .||+|.+++.+|+.+||+|+.+.|... ....++.+... . .++|.|..+|..|.....+.+.
T Consensus         4 ~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP-~~g~vP~L~~~g~~l~eS~aI~~y   75 (231)
T 1oyj_A            4 EKELVLLDFW------VSPFGQRCRIAMAEKGLEFEYREEDLG-NKSDLLLRSNP-VHRKIPVLLHAGRPVSESLVILQY   75 (231)
T ss_dssp             SCCEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHST-TTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CCceEEEeCC------CChHHHHHHHHHHHCCCCCeEEecCcc-cCCHHHHhhCC-CCCCCCEEEECCEEEecHHHHHHH
Confidence            4679999986      689999999999999999999988642 12234555543 4 5899999999888777666554


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        76 L   76 (231)
T 1oyj_A           76 L   76 (231)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=97.29  E-value=0.00053  Score=53.47  Aligned_cols=71  Identities=14%  Similarity=0.212  Sum_probs=54.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +.|||+.+      .+|+|++|+-+|..+||+|+.+.|..  .+....++.++.- ..++|.|..||..|.....+.+..
T Consensus         3 kpiLY~~~------~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~d~~~~l~eS~aI~~YL   75 (228)
T 4hi7_A            3 KPILYGID------ASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNP-QHTVPLLEDGDANIADSHAIMAYL   75 (228)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCT-TCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEECC------CChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhCC-CCceeeEEECCEEEechHHHHHHH
Confidence            45799987      68999999999999999998877643  3334456666654 678999999999887776665543

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=97.28  E-value=0.0017  Score=44.88  Aligned_cols=58  Identities=16%  Similarity=0.220  Sum_probs=42.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      -|+.|+++      .|++|..+...|+.     .++.|..+|+..+++    +.+.++ ...+|.+++  +|+.+.
T Consensus        29 vlv~f~a~------~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~G~~~~   93 (112)
T 1syr_A           29 VIVDFFAE------WCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKEN-ITSMPTFKVYKNGSSVD   93 (112)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHH----HHHHcC-CCcccEEEEEECCcEEE
Confidence            34445554      59999999988876     368899999987764    344455 788998877  888654

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=97.28  E-value=0.00039  Score=53.29  Aligned_cols=71  Identities=13%  Similarity=0.113  Sum_probs=54.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+..      .+++|.+++.+|+.+||+|+.+.|....  ....++.+... ..++|.|..+|..|.....+.+..
T Consensus         2 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   74 (214)
T 2v6k_A            2 KMKLYNFW------RSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNP-QQLVPALDTGAQVLIQSPAIIEWL   74 (214)
T ss_dssp             CCEEEECS------SCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCT-TCCSCEEECSSCEEECHHHHHHHH
T ss_pred             eeEEEecC------CCCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcCC-CCcCCEEEECCEEEecHHHHHHHH
Confidence            57899976      6899999999999999999998886532  23455666655 679999987888777766655543

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5

Probab=97.28  E-value=0.00062  Score=52.93  Aligned_cols=71  Identities=11%  Similarity=0.050  Sum_probs=53.8

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCC-CCCcEEEECCEEEeccchhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR-VIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~-~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ++++||+.+      .||+|.+++.+|+..||+|+.+.+... ....++.+... . .++|.|..||..|.....+.+..
T Consensus         5 ~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP-~~g~vP~L~~~g~~l~eS~aI~~yL   76 (230)
T 1gwc_A            5 DDLKLLGAW------PSPFVTRVKLALALKGLSYEDVEEDLY-KKSELLLKSNP-VHKKIPVLIHNGAPVCESMIILQYI   76 (230)
T ss_dssp             CCEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHST-TTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CcEEEEeCC------CChHHHHHHHHHHHcCCCCeEEecccc-cCCHHHHhhCC-CCCccCEEEECCEEeecHHHHHHHH
Confidence            679999986      689999999999999999999888542 11233444443 3 58999999998887776665543

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5

Probab=97.28  E-value=0.00063  Score=52.20  Aligned_cols=70  Identities=14%  Similarity=0.147  Sum_probs=54.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ++||+.+      .+++|.+++.+|+.+||+|+.+.|...  +....++.+... ..++|.+..||..|.....+.+..
T Consensus         1 ~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   72 (209)
T 1pn9_A            1 MDFYYLP------GSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNP-QHCIPTLVDNGFALWESRAIQIYL   72 (209)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCT-TCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CeEEeCC------CCccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhCC-CCCCCEEEECCEEEEeHHHHHHHH
Confidence            4688876      689999999999999999999888642  223355666655 678999999999888776665543

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A*

Probab=97.27  E-value=0.00077  Score=52.10  Aligned_cols=71  Identities=15%  Similarity=0.055  Sum_probs=53.7

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCC-CCCcEEEECCEEEeccchhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR-VIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~-~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .+++||+..      .||+|.+++.+|+..|++|+.+.+... ....++.+... . .++|.+..+|..|.....+.+..
T Consensus         3 ~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP-~~g~vP~L~~~g~~l~eS~aI~~yL   74 (219)
T 2vo4_A            3 DEVVLLDFW------PSPFGMRVRIALAEKGIKYEYKEEDLR-NKSPLLLQMNP-VHKKIPVLIHNGKPICESLIAVQYI   74 (219)
T ss_dssp             CCEEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTT-SCCHHHHHHCT-TTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEecc------CCchHHHHHHHHHHcCCCceEEecCcc-cCCHHHHHhCC-CCCcCCEEEECCEeeehHHHHHHHH
Confidence            468999986      689999999999999999999888643 11234445543 3 58999999998887776665543

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=97.26  E-value=0.00098  Score=50.93  Aligned_cols=70  Identities=10%  Similarity=0.024  Sum_probs=55.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh--cCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS--LSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~--~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .++||+.+      .+++|.+++.+|+.+||+|+.+.|..+.  ..++.+.  .. ...+|.|..||..|.....+.+..
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   73 (207)
T 1zl9_A            3 SYKLTYFN------GRGAGEVSRQIFAYAGQQYEDNRVTQEQ--WPALKETCAAP-FGQLPFLEVDGKKLAQSHAIARFL   73 (207)
T ss_dssp             CEEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHHHTTCST-TSCSCEEEETTEEEECHHHHHHHH
T ss_pred             ceEEEEcC------CCchHHHHHHHHHHcCCCceEEEecHHH--HHHHhhccCCC-CCCCCEEEECCEEEeeHHHHHHHH
Confidence            57899986      5899999999999999999999887532  3566666  44 678999999999888777665544


Q ss_pred             h
Q 047313          103 E  103 (174)
Q Consensus       103 e  103 (174)
                      +
T Consensus        74 ~   74 (207)
T 1zl9_A           74 A   74 (207)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=97.25  E-value=0.00053  Score=53.30  Aligned_cols=68  Identities=13%  Similarity=0.074  Sum_probs=53.9

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ++||+.+      .|++|.+++.+|..+||+|+.+.|..+  ...++.++.. ..++|.|.++|..|.....+.+..
T Consensus         3 ~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~~P-~g~vP~L~~~~~~l~eS~aI~~yL   70 (229)
T 3lxz_A            3 LKLYGFS------VSNYYNMVKLALLEKGLTFEEVTFYGG--QAPQALEVSP-RGKVPVLETEHGFLSETSVILDYI   70 (229)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCCC--SCHHHHTTST-TSCSCEEEETTEEEESHHHHHHHH
T ss_pred             EEEEeCC------CCchHHHHHHHHHHcCCCCEEEecCCC--CCHHHHhhCC-CCCcCeEEeCCceeecHHHHHHHH
Confidence            7899986      689999999999999999999999543  2345666655 779999999998777666655443

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=97.24  E-value=0.00095  Score=50.80  Aligned_cols=69  Identities=10%  Similarity=0.005  Sum_probs=55.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.+..  +...++.+... ...+|.|..+|..|.....+.+..
T Consensus         3 ~~~Ly~~~------~s~~~~~vr~~L~~~gi~~e~~~v~~--~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 2on7_A            3 HYKLTYFA------IRGAGECARQIFALADQEFEDVRLDK--EQFAKVKPDLP-FGQVPVLEVDGKQLAQSLAICRYL   71 (206)
T ss_dssp             CEEEEEES------SSTTTHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSS-SSCSCEEEETTEEEECHHHHHHHH
T ss_pred             ceEEEEcC------CCcchHHHHHHHHHcCCCeeEEEecH--HHHHHhCcCCC-CCCCCEEEECCEEEeeHHHHHHHH
Confidence            58899987      58999999999999999999998863  23456666655 679999999999888776665543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.22  E-value=0.0047  Score=42.67  Aligned_cols=61  Identities=16%  Similarity=0.238  Sum_probs=44.2

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      +..-|+.|+++      .|+.|..+...|+.    +  ++.|..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        30 ~~~~lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-i~~~Pt~~~~~~g~~~~   98 (121)
T 2i1u_A           30 NKPVLVDFWAT------WCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPET----ARNFQ-VVSIPTLILFKDGQPVK   98 (121)
T ss_dssp             SSCEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             CCcEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHHH----HHhcC-CCcCCEEEEEECCEEEE
Confidence            33445556655      69999999988865    2  588999999877654    34455 778999977  887754

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=97.21  E-value=0.00091  Score=50.89  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=55.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.|..  +...++.+... ...+|.|..||..|.....+.+..+
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~ye~~~v~~--~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL~   72 (206)
T 1tw9_A            3 HYKLTYFN------GRGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATFP-FGQVPVLEVDGQQLAQSQAICRYLA   72 (206)
T ss_dssp             CEEEEEES------SSGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGST-TSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             ceEEEEcC------CCccHHHHHHHHHHcCCCceEEEeCH--HHHHHHcccCC-CCCCCEEEECCEEEecHHHHHHHHH
Confidence            58899987      58999999999999999999998863  22345555554 6789999999998888776665543

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A*

Probab=97.21  E-value=0.00066  Score=52.16  Aligned_cols=71  Identities=11%  Similarity=0.182  Sum_probs=54.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH-----hcCCCCCCcEEEECCEEEeccchhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS-----SLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~-----~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.|....+...++.+     ... ..++|.|..+|..|.....+.
T Consensus         4 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~   76 (211)
T 1okt_A            4 NIVLYYFD------ARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTP-FEQVPILQIGDLILAQSQAIV   76 (211)
T ss_dssp             CEEEEEES------SSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCS-SSCSCEEEETTEEEECHHHHH
T ss_pred             ccEEEEEC------CCchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccCC-CCCCCEEEECCEEeehHHHHH
Confidence            58899987      589999999999999999998888432122355655     444 678999999999888776665


Q ss_pred             hhh
Q 047313          100 GLH  102 (174)
Q Consensus       100 ~l~  102 (174)
                      +..
T Consensus        77 ~yL   79 (211)
T 1okt_A           77 RYL   79 (211)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A

Probab=97.21  E-value=0.00085  Score=53.21  Aligned_cols=78  Identities=10%  Similarity=0.008  Sum_probs=56.3

Q ss_pred             CCcEEEEEeecC--CCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           23 EDSVIFYTTSLR--GIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        23 ~~~VvlYttsl~--~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      ...++||.++-+  .....||+|.+++.+|..+||+|+.+.|... ....++.++.. ..++|.|..+|..|.....+.+
T Consensus         5 ~~~~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP-~g~VPvL~~~g~~l~eS~aI~~   82 (241)
T 1k0m_A            5 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTK-RRTETVQKLCP-GGELPFLLYGTEVHTDTNKIEE   82 (241)
T ss_dssp             -CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTT-SCCHHHHHHCT-TCCSSEEEETTEEEECHHHHHH
T ss_pred             CCceEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCc-ccHHHHHHhCC-CCCCCEEEECCEEecCHHHHHH
Confidence            347899988621  1123799999999999999999998888643 22345555654 6789999999988877666655


Q ss_pred             hh
Q 047313          101 LH  102 (174)
Q Consensus       101 l~  102 (174)
                      ..
T Consensus        83 yL   84 (241)
T 1k0m_A           83 FL   84 (241)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.20  E-value=0.0013  Score=44.41  Aligned_cols=58  Identities=16%  Similarity=0.212  Sum_probs=42.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      -++.|+++      .|++|..+...|+..      ++.+..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        21 ~lv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~g~~~~   86 (109)
T 2yzu_A           21 VLVDFWAE------WCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPKT----AMRYR-VMSIPTVILFKDGQPVE   86 (109)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEECC------CCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHhH----HHhCC-CCcCCEEEEEeCCcEee
Confidence            44555554      699999988877652      488999999887654    44455 778999988  898654

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.20  E-value=0.0021  Score=48.06  Aligned_cols=26  Identities=19%  Similarity=0.208  Sum_probs=20.5

Q ss_pred             cCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           76 LSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        76 ~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .| ...+|.++|+|+.+-|+.....|.
T Consensus       140 ~g-v~gtPt~~i~g~~~~G~~~~~~l~  165 (175)
T 3gyk_A          140 LG-FNGTPSFVVEDALVPGFVEQSQLQ  165 (175)
T ss_dssp             HT-CCSSSEEEETTEEECSCCCHHHHH
T ss_pred             cC-CccCCEEEECCEEeeCCCCHHHHH
Confidence            35 788999999999998886665443

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.19  E-value=0.0024  Score=43.46  Aligned_cols=63  Identities=19%  Similarity=0.462  Sum_probs=45.4

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      +..-++.|+++      .|+.|..+...|+.    +  ++.|..+|+..++++    .+.++ ...+|.+++  +|+.++
T Consensus        22 ~~~vlv~f~a~------~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~-v~~~Pt~~~~~~g~~~~   90 (111)
T 3gnj_A           22 GKACLVMFSRK------NCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKTL----FQRFS-LKGVPQILYFKDGEYKG   90 (111)
T ss_dssp             CCCEEEEEECS------SCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHH----HHHTT-CCSSCEEEEEETTEEEE
T ss_pred             CCEEEEEEeCC------CChhHHHHHHHHHHHHHHcCCceEEEEEECCcChhH----HHhcC-CCcCCEEEEEECCEEEE
Confidence            34456666665      59999999888865    2  388999999887754    44455 778998866  898664


Q ss_pred             cc
Q 047313           94 GA   95 (174)
Q Consensus        94 G~   95 (174)
                      .+
T Consensus        91 ~~   92 (111)
T 3gnj_A           91 KM   92 (111)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=97.16  E-value=0.00061  Score=51.87  Aligned_cols=70  Identities=7%  Similarity=-0.042  Sum_probs=55.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.|..+.  ..++.+... ..++|.|..+|..|.....+.+..+
T Consensus         3 ~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL~   72 (206)
T 2on5_A            3 HYKLTYFA------GRGLAEPIRQIFALAGQKYEDVRYTFQE--WPKHKDEMP-FGQIPVLEEDGKQLAQSFAIARYLS   72 (206)
T ss_dssp             CEEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTT--GGGGGGGST-TSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             ceEEEecC------CCcchHHHHHHHHHcCCCceEEEecHHH--HHHhccCCC-CCCCCEEEECCEEEecHHHHHHHHH
Confidence            58899886      5899999999999999999999886532  245555554 6789999999998887766655443

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=97.16  E-value=0.00071  Score=51.52  Aligned_cols=70  Identities=10%  Similarity=0.005  Sum_probs=55.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.|..+.  ..++.+... ...+|.|..+|..|.....+.+..+
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL~   72 (204)
T 2ws2_A            3 HYKLTYFN------GRGAAEIIRQVFVLAGQDYEDVRLTHEE--WPKHKASMP-FGQLPVLEVDGKQLPQSVAIVRYLA   72 (204)
T ss_dssp             CEEEEEES------SSGGGHHHHHHHHHTTCCCEEEEECTTT--GGGTGGGST-TSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             ccEEEEeC------CCchHHHHHHHHHHcCCCceEEEecHhh--HHHhhhcCC-CCCCCEEEECCEEeecHHHHHHHHH
Confidence            57899987      6899999999999999999999886431  245555554 6789999999998888776665543

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=97.15  E-value=0.0026  Score=43.78  Aligned_cols=59  Identities=19%  Similarity=0.280  Sum_probs=43.3

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-|+.|+++      .|++|..+...|+..     ++.+..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        30 ~~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~g~~~~   95 (118)
T 2vm1_A           30 LVIIDFTAS------WCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKDV----AEAYN-VEAMPTFLFIKDGEKVD   95 (118)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHH----HHHTT-CCSBSEEEEEETTEEEE
T ss_pred             EEEEEEECC------CCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHHH----HHHcC-CCcCcEEEEEeCCeEEE
Confidence            345556665      699999998888652     688999999876654    44455 778999877  898654

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=97.14  E-value=0.00037  Score=56.81  Aligned_cols=72  Identities=15%  Similarity=0.214  Sum_probs=52.0

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC--C--EEEeccc
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK--G--RYIGGAD   96 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~--G--~~IGG~d   96 (174)
                      .+...++||+.+      .|++|.+++.+|+.+||+|+.++|...  .+.++ ++.+ ..++|+|.++  |  ..|....
T Consensus        10 ~~~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~~~~~v~~~--~~~~~-~~~p-~~~vP~l~~~~~g~~~~l~eS~   79 (290)
T 1z9h_A           10 SSRLQLTLYQYK------TCPFCSKVRAFLDFHALPYQVVEVNPV--LRAEI-KFSS-YRKVPILVAQEGESSQQLNDSS   79 (290)
T ss_dssp             ---CEEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTT--TCGGG-TTCS-CCSSCEEEEEETTEEEEECSHH
T ss_pred             CCCCCEEEEeCC------CChHHHHHHHHHHHcCCCeEEEECChh--hHHHH-HHcC-CCCCCEEEECCCCCeEEecCHH
Confidence            344579999986      799999999999999999999999532  11233 3444 7899999985  3  5777766


Q ss_pred             hhhhhh
Q 047313           97 EVVGLH  102 (174)
Q Consensus        97 el~~l~  102 (174)
                      .+.+..
T Consensus        80 aI~~yL   85 (290)
T 1z9h_A           80 VIISAL   85 (290)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665544

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.14  E-value=0.008  Score=40.90  Aligned_cols=70  Identities=9%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|.+.-...+..-++.|+++      .|++|..+...|+.    +  .+.+..+|+..+++    +.+.++ ...+|.++
T Consensus        16 ~~~~~~~~~~~~~lv~f~~~------~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~-v~~~Pt~~   84 (115)
T 1thx_A           16 EFESEVLKAEQPVLVYFWAS------WCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKYK-VEGVPALR   84 (115)
T ss_dssp             GHHHHTTTCSSCEEEEEECT------TCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHTT-CCSSSEEE
T ss_pred             chhhHhhcCCceEEEEEECC------CCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHH----HHHHcC-CCceeEEE
Confidence            45444322333445566655      59999999887765    2  48899999988765    344455 77899998


Q ss_pred             E--CCEEEe
Q 047313           87 I--KGRYIG   93 (174)
Q Consensus        87 I--~G~~IG   93 (174)
                      +  +|+.+.
T Consensus        85 ~~~~G~~~~   93 (115)
T 1thx_A           85 LVKGEQILD   93 (115)
T ss_dssp             EEETTEEEE
T ss_pred             EEcCCEEEE
Confidence            8  898665

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans}

Probab=97.13  E-value=0.00045  Score=52.72  Aligned_cols=70  Identities=17%  Similarity=0.039  Sum_probs=53.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.|... ....++.+... ...+|.+..||..|.....+.+..
T Consensus         3 ~~~Ly~~~------~s~~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   72 (208)
T 1yq1_A            3 SYKLTYFF------FRGLGEPIRLLFHLAGVQFEEVRMNPD-QTWLDIKDSTP-MKQLPVLNIDGFELPQSGAILRYL   72 (208)
T ss_dssp             CEEEEEES------SSTTTHHHHHHHHHHTCCCEEEEECTT-TCCHHHHHTST-TSCSCEEEESSCEECCHHHHHHHH
T ss_pred             ceEEEEeC------CCCchHHHHHHHHHcCCCeEEEEeccc-chhhhhhccCC-CCCCCEEEECCEEEeeHHHHHHHH
Confidence            57899987      589999999999999999998888631 11235555554 678999999998887776665543

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=97.13  E-value=0.00088  Score=51.84  Aligned_cols=71  Identities=14%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .+++|.+++.+|+.+|++|+.+.+...  +....++.++.. ..++|.+..||..|.....+.+..
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~yL   75 (221)
T 2imi_A            3 NLVLYTLH------LSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNP-QHTIPVLDDNGTIITESHAIMIYL   75 (221)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCT-TCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEeeCC------CCccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhCc-CCCCCEEEECCEEEeeHHHHHHHH
Confidence            58899986      689999999999999999999988642  122345656554 679999998998888776665543

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=97.12  E-value=0.001  Score=51.10  Aligned_cols=74  Identities=9%  Similarity=0.042  Sum_probs=47.7

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .+++||+.+.    ..|++|.+++.+|+..||+|+.+.|....  ....++.++.. ..++|.|..+|..|.....+.+.
T Consensus         5 ~~~~Ly~~~~----~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~y   79 (215)
T 3bby_A            5 PAITLWSDAH----FFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQ-TRRVPLLQIDDFELSESSAIAEY   79 (215)
T ss_dssp             CCEEEEEETT----SCCHHHHHHHHHHHHHTCCCEEEEEC-------------------CCCEEEETTEEEESHHHHHHH
T ss_pred             CCEEEEecCC----CCCcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhCC-CCCCCEEEeCCeEeecHHHHHHH
Confidence            4689999741    14899999999999999999988886432  23345666554 66899999999888877666554


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        80 L   80 (215)
T 3bby_A           80 L   80 (215)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=97.11  E-value=0.00096  Score=52.55  Aligned_cols=72  Identities=13%  Similarity=0.076  Sum_probs=55.8

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCC-CCCcEEEECCEEEeccchhhhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGR-VIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~-~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ...++||+..      .|++|.+++.+|..+||+|+.+.|... ....++.++.. . ..+|.|..||..|.....+.+.
T Consensus        10 ~~~~~Ly~~~------~sp~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP-~~g~vPvL~~~g~~l~eS~aI~~Y   81 (231)
T 4dej_A           10 RSVMTLYSGK------DDLKSHQVRLVLAEKGVGVEITYVTDE-STPEDLLQLNP-YPEAKPTLVDRELVLYNAQIIMEY   81 (231)
T ss_dssp             CSSCEEEECS------SCHHHHHHHHHHHHHTCBCEEEECCSS-CCCHHHHHHCC-SSSCCSEEEETTEEEESHHHHHHH
T ss_pred             CceEEEEcCC------CChHHHHHHHHHHHcCCCcEEEEcCcc-cCCHHHHHhCC-CCCCCCEEEECCEEEEcHHHHHHH
Confidence            3458999987      689999999999999999999988654 22345556654 6 7899999999888777666554


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        82 L   82 (231)
T 4dej_A           82 L   82 (231)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.11  E-value=0.0063  Score=40.96  Aligned_cols=59  Identities=22%  Similarity=0.269  Sum_probs=43.1

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-++.|+++      .|++|..+...|+.    +  .+.+..+|+..+++.    .+.++ ...+|.+++  +|+.+.
T Consensus        19 ~~~v~f~~~------~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~G~~~~   85 (105)
T 1nsw_A           19 PVLVDFWAA------WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET----TSQFG-IMSIPTLILFKGGRPVK   85 (105)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             cEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHHH----HHHcC-CccccEEEEEeCCeEEE
Confidence            445556655      59999998887765    2  378999999877654    44456 778999987  898654

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=97.11  E-value=0.0047  Score=42.26  Aligned_cols=62  Identities=21%  Similarity=0.349  Sum_probs=42.9

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      ..-++.|+++      .|+.|..+...|+.       .++.|..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        22 ~~~~v~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~~~~G~~~~   90 (112)
T 3d6i_A           22 KLIVLYFHTS------WAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSEI----SELFE-ISAVPYFIIIHKGTILK   90 (112)
T ss_dssp             CCEEEEEECC------C--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEECC------CCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHHH----HHHcC-CCcccEEEEEECCEEEE
Confidence            3345556665      59999999888763       3688999999887654    44455 788999866  998765


Q ss_pred             cc
Q 047313           94 GA   95 (174)
Q Consensus        94 G~   95 (174)
                      .+
T Consensus        91 ~~   92 (112)
T 3d6i_A           91 EL   92 (112)
T ss_dssp             EE
T ss_pred             Ee
Confidence            43

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.11  E-value=0.0064  Score=40.36  Aligned_cols=58  Identities=10%  Similarity=0.177  Sum_probs=43.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      -++.|+++      .|++|..+...|+.     .++.+..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        19 ~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~g~~~~   83 (104)
T 2e0q_A           19 AVVDFWAE------WCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDI----AARYG-VMSLPTVIFFKDGEPVD   83 (104)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTT-CCSSCEEEEEETTEEEE
T ss_pred             EEEEEECC------CChhHHHHhHHHHHHHHHcCCceEEEEECCCCHHH----HHhCC-ccccCEEEEEECCeEhh
Confidence            44555554      69999999888765     2588999999887654    44455 778999988  898764

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=97.11  E-value=0.0034  Score=42.25  Aligned_cols=63  Identities=22%  Similarity=0.294  Sum_probs=46.1

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGG   94 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG   94 (174)
                      +..-++.|+++      .|++|..+...|+.     .++.+..+|+..++++.    +..+ ...+|.+++  +|+.++.
T Consensus        20 ~~~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~----~~~~-v~~~Pt~~~~~~g~~~~~   88 (105)
T 3m9j_A           20 DKLVVVDFSAT------WCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVA----SESE-VKSMPTFQFFKKGQKVGE   88 (105)
T ss_dssp             TSCEEEEEECT------TCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHHHH----HHTT-CCBSSEEEEEETTEEEEE
T ss_pred             CCeEEEEEECC------CChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHHHH----HHcC-CCcCcEEEEEECCeEEEE
Confidence            33445556665      69999999998876     36889999998876643    4445 788999877  8887654


Q ss_pred             c
Q 047313           95 A   95 (174)
Q Consensus        95 ~   95 (174)
                      +
T Consensus        89 ~   89 (105)
T 3m9j_A           89 F   89 (105)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=97.10  E-value=0.001  Score=52.56  Aligned_cols=69  Identities=12%  Similarity=0.041  Sum_probs=54.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++||+..      .+++|.+++.+|+.+||+|+.+.|....  ....++.+... ..++|.|..||..|.....+.+.
T Consensus         3 ~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~d~g~~l~eS~aI~~Y   73 (244)
T 1ljr_A            3 LELFLDL------VSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINS-LGKLPTLKDGDFILTESSAILIY   73 (244)
T ss_dssp             CEEEECT------TSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCT-TCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEEecC------CCcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhCC-CCcCcEEEECCEEEEchHHHHHH
Confidence            6789876      6899999999999999999998886432  23355666654 67899999999988877666554

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=97.10  E-value=0.0016  Score=50.24  Aligned_cols=71  Identities=10%  Similarity=0.183  Sum_probs=54.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .++||+.+      .+++|.+++.+|+..||+|+.+.|...  +....++.+... ..++|.|..+|..|.....+.+..
T Consensus         2 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~yL   74 (218)
T 1r5a_A            2 TTVLYYLP------ASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNP-QHCIPTMDDHGLVLWESRVILSYL   74 (218)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCT-TCCSSEEEETTEEEECHHHHHHHH
T ss_pred             eEEEEeCC------CChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhCC-CCCcCEEEECCEEEEcHHHHHHHH
Confidence            37899986      689999999999999999999988653  222355666554 678999999998887776655543

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=97.09  E-value=0.00085  Score=51.73  Aligned_cols=71  Identities=10%  Similarity=0.050  Sum_probs=55.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+..      .+++|.+++.+|+.+||+|+.+.+...  +....++.+... ..++|.|..+|..|.....+.+..
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~yL   75 (216)
T 3ay8_A            3 SLKLYHFP------VSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNP-QHCVPTLDDNNFVLWESRAIACYL   75 (216)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHSS-SCCSSEEEETTEEEECHHHHHHHH
T ss_pred             ceEEecCC------CCccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhCC-CCCCCeEEECCEEEEcHHHHHHHH
Confidence            47899986      689999999999999999999888642  122345666655 678999999999888776665543

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.09  E-value=0.01  Score=40.40  Aligned_cols=60  Identities=13%  Similarity=0.193  Sum_probs=42.9

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      ..-++.|+++      .|+.|..+...|+.    +  .+.+..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        24 ~~~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~G~~~~   91 (112)
T 1t00_A           24 KPVLVDFWAA------WCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPGT----AAKYG-VMSIPTLNVYQGGEVAK   91 (112)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             CeEEEEEECC------CCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHHH----HHhCC-CCcccEEEEEeCCEEEE
Confidence            3445566665      59999998877764    3  488899999887654    34455 778999877  887653

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=97.09  E-value=0.0011  Score=50.57  Aligned_cols=69  Identities=16%  Similarity=0.120  Sum_probs=54.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.+..+  ...++.+... ...+|.+..||..|.....+.+..
T Consensus         2 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   70 (202)
T 2gsq_A            2 KYTLHYFP------LMGRAELCRFVLAAHGEEFTDRVVEMA--DWPNLKATMY-SNAMPVLDIDGTKMSQSMCIARHL   70 (202)
T ss_dssp             CEEEEECS------SSGGGHHHHHHHHHTTCCCEEEECCTT--THHHHGGGSG-GGSSCEEEETTEEECCHHHHHHHH
T ss_pred             CcEEEEcC------CCchhHHHHHHHHHcCCCeeEEEeCHH--HHHhhcccCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence            47899986      589999999999999999999998753  2345666554 668999999998888776665543

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.08  E-value=0.0035  Score=43.63  Aligned_cols=60  Identities=20%  Similarity=0.216  Sum_probs=44.1

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      ..-|+.|+++      .|++|..+...|+.     .++.|..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        35 ~~~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~~~~G~~~~  101 (122)
T 2vlu_A           35 KLVVIDFTAS------WCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKPI----AEQFS-VEAMPTFLFMKEGDVKD  101 (122)
T ss_dssp             CCEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEECC------CCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHHH----HHHcC-CCcccEEEEEeCCEEEE
Confidence            3456666665      59999999888865     2588999999887654    34455 778999877  888654

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=97.08  E-value=0.0049  Score=42.01  Aligned_cols=59  Identities=20%  Similarity=0.337  Sum_probs=43.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-|+.|+++      .|++|..+...|+.    +  ++.+..+|+..++++.+    .++ ...+|.+++  +|+.+.
T Consensus        26 ~~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~----~~~-v~~~Pt~~~~~~G~~~~   92 (112)
T 1ep7_A           26 PIVVDFTAT------WCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAE----AAG-ITAMPTFHVYKDGVKAD   92 (112)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHH----HHT-CCBSSEEEEEETTEEEE
T ss_pred             eEEEEEECC------CCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHHHH----HcC-CCcccEEEEEECCeEEE
Confidence            345556665      59999998888765    3  58899999987766444    345 778999877  888654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.08  E-value=0.0028  Score=42.61  Aligned_cols=69  Identities=14%  Similarity=0.295  Sum_probs=46.8

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|++.-  .+..-++.|+++      .|++|..+...|+.    +  .+.+..+|+..+++..    +.++ ...+|.++
T Consensus        12 ~~~~~~--~~~~~lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~-v~~~Pt~~   78 (106)
T 3die_A           12 DFDSKV--ESGVQLVDFWAT------ACGPCKMIAPVLEELAADYEGKADILKLDVDENPSTA----AKYE-VMSIPTLI   78 (106)
T ss_dssp             THHHHS--CSSEEEEEEECS------BCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHH----HHTT-CCSBSEEE
T ss_pred             HHHHHh--cCCcEEEEEECC------CCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHHH----HhCC-CcccCEEE
Confidence            344444  333445555555      59999999888865    2  3889999998877643    4455 77899986


Q ss_pred             E--CCEEEec
Q 047313           87 I--KGRYIGG   94 (174)
Q Consensus        87 I--~G~~IGG   94 (174)
                      +  +|+.+..
T Consensus        79 ~~~~G~~~~~   88 (106)
T 3die_A           79 VFKDGQPVDK   88 (106)
T ss_dssp             EEETTEEEEE
T ss_pred             EEeCCeEEEE
Confidence            6  8876653

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*

Probab=97.07  E-value=0.0012  Score=51.42  Aligned_cols=71  Identities=14%  Similarity=0.104  Sum_probs=55.2

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECC-----------E
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKG-----------R   90 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G-----------~   90 (174)
                      .+++||+..      .+++|.+++.+|+.+||+|+.+.|...  +....++.++.. ..++|.|.++|           .
T Consensus         8 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~g~~~~~~~~~~~   80 (235)
T 3n5o_A            8 PNFELYGYF------RSSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLNP-TNTVPLLVVSNINNTVSPSSASF   80 (235)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCT-TCCSCEEEEESSCCSSSTTCSEE
T ss_pred             CCeEEEecC------CCcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcCC-CCCCCEEEeCCCccccccccCce
Confidence            479999986      689999999999999999999988542  233456667665 77999999988           7


Q ss_pred             EEeccchhhhh
Q 047313           91 YIGGADEVVGL  101 (174)
Q Consensus        91 ~IGG~del~~l  101 (174)
                      .|.....|.+.
T Consensus        81 ~l~eS~aI~~y   91 (235)
T 3n5o_A           81 SIGQSLAALEY   91 (235)
T ss_dssp             EECSHHHHHHH
T ss_pred             eehhHHHHHHH
Confidence            77666555444

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=97.05  E-value=0.0029  Score=43.13  Aligned_cols=58  Identities=22%  Similarity=0.368  Sum_probs=41.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      -|+.|+++      .|++|..+...|+..     ++.|..+|+..++++.+.+    + ...+|.+++  +|+.+.
T Consensus        29 ~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~----~-v~~~Pt~~~~~~G~~~~   93 (113)
T 1ti3_A           29 IVVDFTAS------WCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW----N-VEAMPTFIFLKDGKLVD   93 (113)
T ss_dssp             EEEEEECS------SCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHH----H-CSSTTEEEEEETTEEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHhC----C-CCcccEEEEEeCCEEEE
Confidence            34445555      599999998777652     6888999998877654443    4 667999876  898654

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.05  E-value=0.0047  Score=41.55  Aligned_cols=58  Identities=19%  Similarity=0.181  Sum_probs=42.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      -|+.|+++      .|++|..+...|+.      .++.+..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        23 ~lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~G~~~~   88 (107)
T 2i4a_A           23 VLVDFWAE------WCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPET----PNAYQ-VRSIPTLMLVRDGKVID   88 (107)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEECC------CChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHHH----HHhcC-CCccCEEEEEeCCEEEE
Confidence            44455554      69999999888865      2578899999877653    34455 778999987  998765

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A

Probab=97.05  E-value=0.0014  Score=51.90  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=55.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .|++|+.+      .+|+|.+|+.+|+..||+|+.+.|....  ....++.++.. ...+|.|..||..|.....+.+..
T Consensus         9 ~~~ly~~~------~sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP-~gkVPvL~d~g~~l~ES~aI~~YL   81 (247)
T 2c3n_A            9 GLELYLDL------LSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNP-LKKVPALKDGDFTLTESVAILLYL   81 (247)
T ss_dssp             CEEEEECT------TSHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCT-TCCSCEEEETTEEEECHHHHHHHH
T ss_pred             ceEEeecC------CChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCC-CCcCcEEEECCEEEEcHHHHHHHH
Confidence            68999987      6899999999999999999998886421  22345666654 678999999998887776665543

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=97.03  E-value=0.0014  Score=50.15  Aligned_cols=73  Identities=11%  Similarity=0.186  Sum_probs=54.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      .++||+.+      .+++|.+++.+|+..||+|+.+.|...  +....++.+... ..++|.|.+ +|..|.....+.+.
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~d~g~~l~eS~aI~~y   75 (210)
T 3m3m_A            3 LYKVYGDY------RSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKNP-NGKIPVLELEDGTCLWESNAILNF   75 (210)
T ss_dssp             CEEEEECT------TSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTCT-TCCSCEEEETTSCEEECHHHHHHH
T ss_pred             eEEEeCCC------CCCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhCC-CCCCCEEEecCCEEEecHHHHHHH
Confidence            47899986      689999999999999999999988642  223345655554 679999996 77777766666555


Q ss_pred             hhc
Q 047313          102 HEQ  104 (174)
Q Consensus       102 ~e~  104 (174)
                      .+.
T Consensus        76 L~~   78 (210)
T 3m3m_A           76 LAD   78 (210)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            443

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=97.03  E-value=0.0054  Score=41.71  Aligned_cols=59  Identities=19%  Similarity=0.140  Sum_probs=43.4

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-++.|+++      .|+.|..+...|+.     .++.|..+|+..+++    +.+.++ ...+|.+++  +|+.+.
T Consensus        23 ~v~v~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~G~~~~   88 (107)
T 1gh2_A           23 LAVVKFTMR------GCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG----TAATNN-ISATPTFQFFRNKVRID   88 (107)
T ss_dssp             CEEEEEECS------SCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECC------CChhhHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHhcC-CCcccEEEEEECCeEEE
Confidence            345566665      59999999988876     268899999987765    444456 778998754  888665

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=97.02  E-value=0.00033  Score=46.91  Aligned_cols=52  Identities=25%  Similarity=0.541  Sum_probs=37.1

Q ss_pred             CCCCCCCCCcce------EeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIRF------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r~------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+.      .+|+.|+|+.+++....+   ......|+.|+-.|.+   +|+.|.
T Consensus        11 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~---~~~~~~C~~C~G~G~~~~~~C~~C~   71 (79)
T 1exk_A           11 LEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGF---FAVQQTCPHCQGRGTLIKDPCNKCH   71 (79)
T ss_dssp             EEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETT---EEEEEECTTTTTSSEECSSBCGGGT
T ss_pred             ceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCC---CEEeeECcCCCCccEECCCcCCCCC
Confidence            346888888874      689999999877653222   1124689999988888   888873

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=97.01  E-value=0.007  Score=41.67  Aligned_cols=72  Identities=14%  Similarity=0.247  Sum_probs=48.9

Q ss_pred             hhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           12 KGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        12 ~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      ..|++.-.. +..-|+.|+++      .|+.|..+...|+.     .++.|..+|+..++++    .+.++ ...+|.++
T Consensus        15 ~~f~~~~~~-~k~vlv~f~a~------wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~l----~~~~~-v~~~Pt~~   82 (109)
T 3f3q_A           15 SEFDSAIAQ-DKLVVVDFYAT------WCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDV----AQKNE-VSAMPTLL   82 (109)
T ss_dssp             HHHHHHTTS-SSCEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTT-CCSSSEEE
T ss_pred             HHHHHHHhc-CCEEEEEEECC------cCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH----HHHcC-CCccCEEE
Confidence            345554422 33344456655      59999999988876     3688999999877664    44456 78899987


Q ss_pred             E--CCEEEecc
Q 047313           87 I--KGRYIGGA   95 (174)
Q Consensus        87 I--~G~~IGG~   95 (174)
                      +  +|+.+..+
T Consensus        83 ~~~~G~~~~~~   93 (109)
T 3f3q_A           83 LFKNGKEVAKV   93 (109)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCEEEEEE
Confidence            6  88876533

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.01  E-value=0.0099  Score=39.75  Aligned_cols=61  Identities=10%  Similarity=0.177  Sum_probs=43.4

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      +..-++.|+++      .|++|..+...|+.    +  .+.+..+|+..++++    .+..+ ...+|.+++  +|+.+.
T Consensus        18 ~~~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~g~~~~   86 (105)
T 1fb6_A           18 EVPVMVDFWAP------WCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI----ATQYN-IRSIPTVLFFKNGERKE   86 (105)
T ss_dssp             SSCEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             CCcEEEEEECC------CChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHHH----HHhCC-CCcccEEEEEeCCeEEE
Confidence            33455556655      69999999888764    3  378889999877654    34455 778999987  887654

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*

Probab=97.01  E-value=0.00099  Score=51.28  Aligned_cols=70  Identities=14%  Similarity=0.152  Sum_probs=54.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l~  102 (174)
                      ++||+.+      .|++|.+++.+|+.+||+|+.+.|...  .....++.+... ..++|.|.. +|..|.....+.+..
T Consensus         1 m~Ly~~~------~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~~g~~l~eS~aI~~yL   73 (219)
T 3f6d_A            1 MDFYYLP------GSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNP-QHCIPTLVDEDGFVLWESRAIQIYL   73 (219)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCT-TCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CEEEeCC------CCCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhCC-CCccCeEEeCCCCEEEcHHHHHHHH
Confidence            4688886      689999999999999999999888542  223455666665 779999999 898887776665543

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=97.00  E-value=0.0017  Score=50.64  Aligned_cols=70  Identities=14%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ..++||+..      .+++|.+++.+|+.+||+|+.+.|..  +...++.+... ...+|.|..||..|.....+.+..
T Consensus        26 ~~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~--~~~~~~~~~nP-~g~vPvL~~~g~~l~eS~aI~~YL   95 (225)
T 2hnl_A           26 EKYTLTYFN------GRGRAEVIRLLFALANVSYEDNRITR--DEWKYLKPRTP-FGHVPMLNVSGNVLGESHAIELLL   95 (225)
T ss_dssp             CCEEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSS-SSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCeEEEEcC------CCCchHHHHHHHHHCCCCeeEEEeCh--hhhHHhccCCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence            358999986      58999999999999999999998864  33456666654 678999999998887776665543

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=97.00  E-value=0.0026  Score=44.28  Aligned_cols=64  Identities=16%  Similarity=0.097  Sum_probs=43.7

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFI--KGRYIGG   94 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI--~G~~IGG   94 (174)
                      .-++.|+++      .|++|+++...|+    .+++.+..+|+....  ....++.+.++ -..+|++++  +|+.+.-
T Consensus        31 ~~~v~f~a~------wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-i~~~Pt~~~~~~G~~~~~  102 (118)
T 1zma_A           31 TATFFIGRK------TCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG-IPTVPGFVHITDGQINVR  102 (118)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT-CCSSCEEEEEETTEEEEE
T ss_pred             eEEEEEECC------CCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcC-CCCCCeEEEEECCEEEEE
Confidence            345556655      5999999866664    356778888886543  44456666677 888999854  7876643

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.00  E-value=0.0061  Score=40.88  Aligned_cols=60  Identities=15%  Similarity=0.118  Sum_probs=42.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEecc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGA   95 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~   95 (174)
                      -++.|+++      .|++|..+...|+.      .++.+..+|+..++++    .+.++ ...+|.+++  +|+.+..+
T Consensus        23 ~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~G~~~~~~   90 (106)
T 1xwb_A           23 VVLDFFAT------WCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDI----AMEYN-ISSMPTFVFLKNGVKVEEF   90 (106)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEEEE
T ss_pred             EEEEEECC------cCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHHH----HHHcC-CCcccEEEEEcCCcEEEEE
Confidence            34455554      69999998887765      3677889999877654    44455 778999877  88866533

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=96.99  E-value=0.0079  Score=42.17  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=41.7

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE---CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI---KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI---~G~~IG   93 (174)
                      .-++.|+++      .|+.|..+...|+.      .++.+..+|+..+..  .++.+.++ ...+|.+++   +|+.+.
T Consensus        28 ~~lv~f~a~------wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~~--~~~~~~~~-v~~~Pt~~~~~~~G~~~~   97 (126)
T 2l57_A           28 PTIIMFKTD------TCPYCVEMQKELSYVSKEREGKFNIYYARLEEEKN--IDLAYKYD-ANIVPTTVFLDKEGNKFY   97 (126)
T ss_dssp             CEEEEEECS------SCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSHH--HHHHHHTT-CCSSSEEEEECTTCCEEE
T ss_pred             cEEEEEECC------CCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCch--HHHHHHcC-CcceeEEEEECCCCCEEE
Confidence            345556665      59999998887765      368888899322222  34555566 788999987   787654

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.99  E-value=0.011  Score=39.90  Aligned_cols=69  Identities=9%  Similarity=0.162  Sum_probs=46.0

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|.+.....+..-++.|+++      .|++|..+...|+.    +  .+.+..+|+..++++.+    .++ ...+|.++
T Consensus        10 ~~~~~~~~~~~~~lv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~-v~~~Pt~~   78 (107)
T 1dby_A           10 TFKNVVLESSVPVLVDFWAP------WCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVAS----EYG-IRSIPTIM   78 (107)
T ss_dssp             HHHHHTTTCSSCEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHHHH----HHT-CCSSCEEE
T ss_pred             HHHHHHhcCCCcEEEEEECC------CCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHH----HCC-CCcCCEEE
Confidence            34443322233445556655      59999999887765    3  48889999988776444    345 77899987


Q ss_pred             E--CCEEE
Q 047313           87 I--KGRYI   92 (174)
Q Consensus        87 I--~G~~I   92 (174)
                      +  +|+.+
T Consensus        79 ~~~~G~~~   86 (107)
T 1dby_A           79 VFKGGKKC   86 (107)
T ss_dssp             EESSSSEE
T ss_pred             EEeCCEEE
Confidence            7  77654

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=96.97  E-value=0.0016  Score=56.22  Aligned_cols=74  Identities=15%  Similarity=0.210  Sum_probs=57.9

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC---EEEeccchhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG---RYIGGADEVV   99 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G---~~IGG~del~   99 (174)
                      ...++||+..      .|++|.+++.+|..+||+|+.+.|........++.++.. ..++|.|.++|   ..|.....+.
T Consensus        24 ~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP-~g~vP~L~~~~~~g~~l~eS~aI~   96 (471)
T 4ags_A           24 ARALKLYVSA------TCPFCHRVEIVAREKQVSYDRVAVGLREEMPQWYKQINP-RETVPTLEVGNADKRFMFESMLIA   96 (471)
T ss_dssp             -CCEEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCCGGGCCHHHHHHCT-TCCSCEEEECSSSCEEEESHHHHH
T ss_pred             CCceEEECCC------CCchHHHHHHHHHHcCCCCEEEEeCCCCCccHHHHhhCC-CCccCeEEECCcCeEEEecHHHHH
Confidence            3579999986      699999999999999999999998764434455777765 78999999987   7777666665


Q ss_pred             hhhh
Q 047313          100 GLHE  103 (174)
Q Consensus       100 ~l~e  103 (174)
                      +..+
T Consensus        97 ~yL~  100 (471)
T 4ags_A           97 QYLD  100 (471)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5433

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*

Probab=96.96  E-value=0.001  Score=51.52  Aligned_cols=72  Identities=15%  Similarity=0.127  Sum_probs=53.4

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCC--cEEEEECCCC--HHHHHHHHHhcCCCCCCcEEE-ECCEEEeccch
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKV--TFYERDVSLH--MEFRDELWSSLSGRVIPPRLF-IKGRYIGGADE   97 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v--~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~de   97 (174)
                      +.+++||+.+      .+++|.+++.+|+.+|+  +|+.++|...  .....++.+... ..++|.|. .+|..|.....
T Consensus        16 ~~~~~Ly~~~------~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~g~~l~eS~a   88 (233)
T 3ibh_A           16 KQKMIIYDTP------AGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNY-SGTVPVLELDDGTLIAECTA   88 (233)
T ss_dssp             ---CEEEECT------TCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCT-TCCSCEEECTTCCEEESHHH
T ss_pred             ccceEEecCC------CCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCC-CCccceEEecCCeEEecHHH
Confidence            3579999987      68999999999999999  9998888532  223455666655 77999999 68877776665


Q ss_pred             hhhh
Q 047313           98 VVGL  101 (174)
Q Consensus        98 l~~l  101 (174)
                      +.+.
T Consensus        89 I~~y   92 (233)
T 3ibh_A           89 ITEY   92 (233)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=96.96  E-value=0.0028  Score=50.46  Aligned_cols=71  Identities=8%  Similarity=0.066  Sum_probs=54.9

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE---CCEEEeccchh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI---KGRYIGGADEV   98 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI---~G~~IGG~del   98 (174)
                      ..++||+..      .|++|.+++.+|..+||+|+.+.|...  .....++.++.. ..++|.|..   +|..|.....+
T Consensus        18 ~~~~Ly~~~------~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~~~g~~l~ES~aI   90 (260)
T 1k0d_A           18 EGYTLFSHR------SAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNP-NARVPALIDHGMDNLSIWESGAI   90 (260)
T ss_dssp             SSEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCT-TCCSCEEEEGGGTTEEEESHHHH
T ss_pred             CcEEEEcCC------CCccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhCC-CCCcCEEEecCCCCeEEECHHHH
Confidence            569999986      689999999999999999999887643  223355666654 678999998   78888776665


Q ss_pred             hhh
Q 047313           99 VGL  101 (174)
Q Consensus        99 ~~l  101 (174)
                      .+.
T Consensus        91 ~~Y   93 (260)
T 1k0d_A           91 LLH   93 (260)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=96.95  E-value=0.0062  Score=44.67  Aligned_cols=60  Identities=12%  Similarity=0.172  Sum_probs=44.7

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      ..-||.|+++      .|+.|..+...|+..     ++.|..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        33 ~~vvv~F~a~------wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~l----~~~~~-v~~~Pt~~~~~~G~~~~   99 (153)
T 2wz9_A           33 SLLVVHFWAP------WAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEV----SEKYE-ISSVPTFLFFKNSQKID   99 (153)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             CeEEEEEECC------CCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHHH----HHHcC-CCCCCEEEEEECCEEEE
Confidence            3345556655      599999998888763     789999999887654    44456 788999987  998754

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=96.93  E-value=0.0014  Score=50.53  Aligned_cols=70  Identities=17%  Similarity=0.269  Sum_probs=45.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH----HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM----EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~----~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++||+..      .+++|.+++.+|+.+|++|+.+.|....    ....++.++.. ..++|.|..+|..|.....+.+.
T Consensus         3 ~~Ly~~~------~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~y   75 (222)
T 3niv_A            3 LILYDYF------RSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINP-QELVPSLDINGQILSQSMAIIDY   75 (222)
T ss_dssp             -CEEECT------TCHHHHHHHHHHHHTTCCCCEEECCC--------------------CCSEEEETTEEEECHHHHHHH
T ss_pred             EEEEcCC------CCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCC-CCCcCEEEECCEEeecHHHHHHH
Confidence            5788875      6899999999999999999988886533    23455666654 67899999999988777666554


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        76 L   76 (222)
T 3niv_A           76 L   76 (222)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=96.93  E-value=0.0012  Score=50.40  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=53.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++||+.+      .+++|.+++.+|+.+||+|+.+.|...  +....++.+... ..++|.+..||..|.....+.+.
T Consensus         2 ~~Ly~~~------~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~y   72 (209)
T 3ein_A            2 VDFYYLP------GSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINP-QHTIPTLVDNGFALWESRAIQVY   72 (209)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTCT-TCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEecCC------CCccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence            4688876      689999999999999999999888643  223455666654 67999999999988877666554

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5

Probab=96.93  E-value=0.0052  Score=47.54  Aligned_cols=74  Identities=15%  Similarity=0.089  Sum_probs=52.6

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC-------HHHHHHHHHhcCCCCCCcEEEECCEEEecc
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH-------MEFRDELWSSLSGRVIPPRLFIKGRYIGGA   95 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~-------~~~~~el~~~~g~~~~~P~vFI~G~~IGG~   95 (174)
                      ..+++||..+      .+++|.+++.+|+.+||+|+.+.|...       +++...+........++|.|..+|..|...
T Consensus         3 ~~~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS   76 (224)
T 3gtu_B            3 ESSMVLGYWD------IRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKITQS   76 (224)
T ss_dssp             CCCEEEEEES------SSGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEEETTEEEESH
T ss_pred             CCCcEEEEeC------CCcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEEECCEEeecH
Confidence            4578899886      589999999999999999999888632       333332221112256799998888888776


Q ss_pred             chhhhhh
Q 047313           96 DEVVGLH  102 (174)
Q Consensus        96 del~~l~  102 (174)
                      ..+.+..
T Consensus        77 ~aI~~yL   83 (224)
T 3gtu_B           77 NAILRYI   83 (224)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=96.93  E-value=0.0028  Score=43.18  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=33.2

Q ss_pred             CChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           39 TFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .|+.|..+...|+.     .++.+..+|+..++++.+    .++ ...+|.+++  +|+.+.
T Consensus        29 wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~~----~~~-v~~~Pt~~~~~~G~~~~   85 (105)
T 4euy_A           29 NCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIAG----RYA-VFTGPTVLLFYNGKEIL   85 (105)
T ss_dssp             SCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC--------------CCCCEEEEEETTEEEE
T ss_pred             CCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHHH----hcC-CCCCCEEEEEeCCeEEE
Confidence            59999999888876     267888999988775443    344 678998755  888764

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=96.92  E-value=0.0049  Score=43.99  Aligned_cols=60  Identities=23%  Similarity=0.340  Sum_probs=44.4

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGG   94 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG   94 (174)
                      .-|+.|+++      .|+.|..+...|+.     .++.|..+|+..++++    .+.++ ...+|.+++  +|+.+..
T Consensus        39 ~vvv~F~a~------wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l----~~~~~-v~~~Pt~~i~~~G~~~~~  105 (125)
T 1r26_A           39 LTVAWFTAV------WCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEI----VSKCR-VLQLPTFIIARSGKMLGH  105 (125)
T ss_dssp             CEEEEEECT------TCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEEE
T ss_pred             EEEEEEECC------cCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH----HHHcC-CCcccEEEEEeCCeEEEE
Confidence            345556655      59999999888876     3689999999887654    34455 788999987  8986543

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}

Probab=96.91  E-value=0.0012  Score=54.25  Aligned_cols=70  Identities=14%  Similarity=0.031  Sum_probs=55.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .++||+.+      .+++|.+++.+|+.+|++|+.+.+... ....++..+.+...++|.|.++|..|.....+.+.
T Consensus         3 ~~~Ly~~~------~sp~~~kvr~~L~~~gi~ye~~~v~~~-~~~~~~~~~n~P~g~vPvL~~~g~~l~eS~aI~~y   72 (310)
T 3ic8_A            3 ELILHHYP------TSLFAEKARLMLGFKGVNWRSVTIPSI-MPKPDLTALTGGYRKTPVLQIGADIYCDTALMARR   72 (310)
T ss_dssp             CEEEEECT------TCGGGHHHHHHHHHHTCEEEEEECCSS-SCCHHHHHHHSSCCCSCEEEETTEEECSHHHHHHH
T ss_pred             eEEEEecC------CCcHHHHHHHHHHhcCCCcEEEEcCCC-CCcHHHHHhcCCCCceeEEEECCEEEcCHHHHHHH
Confidence            58999987      689999999999999999999988642 12345666663378999999999988777665544

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=96.90  E-value=0.0032  Score=40.27  Aligned_cols=56  Identities=13%  Similarity=0.175  Sum_probs=38.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHH----hCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQ----SFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~----~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG   93 (174)
                      +|.+|++       .|+.|+.+...|+    .++..+..+.|. +.    ++.+.+| ...+|.++++|+.+.
T Consensus         3 ~v~f~a~-------wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-~~----~~~~~~~-v~~~Pt~~~~G~~~~   62 (77)
T 1ilo_A            3 KIQIYGT-------GCANCQMLEKNAREAVKELGIDAEFEKIK-EM----DQILEAG-LTALPGLAVDGELKI   62 (77)
T ss_dssp             EEEEECS-------SSSTTHHHHHHHHHHHHHTTCCEEEEEEC-SH----HHHHHHT-CSSSSCEEETTEEEE
T ss_pred             EEEEEcC-------CChhHHHHHHHHHHHHHHcCCceEEEEec-CH----HHHHHCC-CCcCCEEEECCEEEE
Confidence            3556664       4999999887765    356566666665 33    3444556 788999999998763

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris}

Probab=96.90  E-value=0.0014  Score=50.84  Aligned_cols=73  Identities=12%  Similarity=0.186  Sum_probs=54.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      .++||+.+      .+++|.+++.+|+.+||+|+.+.|...  .....++.+... ..++|.|.+ +|..|.....+.+.
T Consensus         3 ~~~Ly~~~------~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~~g~~l~eS~aI~~y   75 (225)
T 3m8n_A            3 LYKLYSMQ------RSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKNP-SGQVPLLETAPGRYLAESNAILWY   75 (225)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTCT-TCCSSEEECSTTCEEECHHHHHHH
T ss_pred             ceEEecCC------CCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhCC-CCCCCEEEeCCCCEEEcHHHHHHH
Confidence            37899987      689999999999999999999988542  122345555554 679999997 67777776666555


Q ss_pred             hhc
Q 047313          102 HEQ  104 (174)
Q Consensus       102 ~e~  104 (174)
                      .+.
T Consensus        76 L~~   78 (225)
T 3m8n_A           76 LAV   78 (225)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            443

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*

Probab=96.88  E-value=0.0034  Score=48.36  Aligned_cols=71  Identities=13%  Similarity=0.091  Sum_probs=52.8

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC--CCCCcEEEECCEEEeccchhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG--RVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~--~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++++||+.+      .+++|.+++.+|+.+|++|+.+.|...+++. .+... |.  ..++|.|..+|..|.....+.+.
T Consensus         3 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~-~~~p~-~~~p~g~vP~L~~~g~~l~eS~aI~~y   74 (222)
T 3ik7_A            3 ARPKLHYPN------GRGRMESVRWVLAAAGVEFDEEFLETKEQLY-KLQDG-NHLLFQQVPMVEIDGMKLVQTRSILHY   74 (222)
T ss_dssp             CSCEEEECS------SCTTTHHHHHHHHHTTCCCEEEECCSHHHHH-HHHHT-TCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCcEEEEeC------CCcchHHHHHHHHHcCCCeeEEeeCcHHHHH-Hhhhc-CCCCCCCCCEEEECCEEeehHHHHHHH
Confidence            468899987      5899999999999999999999997543332 12221 11  35899999999988777666554


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        75 L   75 (222)
T 3ik7_A           75 I   75 (222)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A

Probab=96.87  E-value=0.005  Score=47.99  Aligned_cols=70  Identities=20%  Similarity=0.206  Sum_probs=54.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh--cCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS--LSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~--~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .++||+..      .+++|.+++.+|..+||+|+.+.+...+. ..++...  .. ...+|.|..+|..|.....+.+..
T Consensus         4 ~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~YL   75 (229)
T 1vf1_A            4 KPVLYYFN------GRGKMESIRWLLAAAGVEFEEVFLETREQ-YEKLLQSGILM-FQQVPMVEIDGMKLVQTRAILNYI   75 (229)
T ss_dssp             CCEEEECS------SCTTTHHHHHHHHHTTCCCEEEECCSHHH-HHHHHHHTCST-TSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CeEEEEeC------CCchhHHHHHHHHHcCCCCeeEecCcHHH-HHHHHHhcCCC-CCCCCEEEECCEEEEcHHHHHHHH
Confidence            57899876      58999999999999999999999864333 3445555  43 668999999998887776665543

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=96.87  E-value=0.0037  Score=44.38  Aligned_cols=58  Identities=21%  Similarity=0.295  Sum_probs=42.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      -|+.|+++      .|+.|..+...|+..     ++.|..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        41 vvv~f~a~------wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~l----~~~~~-v~~~Pt~~~~~~G~~~~  105 (124)
T 1xfl_A           41 VVVDFTAS------WCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSV----ASDWA-IQAMPTFMFLKEGKILD  105 (124)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHHH----HHHcC-CCccCEEEEEECCEEEE
Confidence            34455555      599999998888752     678889999877654    44456 778999877  898764

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*

Probab=96.87  E-value=0.0012  Score=50.50  Aligned_cols=68  Identities=13%  Similarity=0.157  Sum_probs=53.0

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l  101 (174)
                      ++||+..      .|++|.+++.+|+.+||+|+.+.|..... ..++.++.. ..++|.|. .||..|.....+.+.
T Consensus         3 ~~Ly~~~------~sp~~~~v~~~l~~~gi~~e~~~v~~~~~-~~~~~~~nP-~g~vP~L~~~~g~~l~eS~aI~~y   71 (213)
T 3m0f_A            3 LKLIGML------DSPYVRRVAISLKSLGLPFEHHSLSVFST-FEQFKAINP-VVKAPTLVCEGGEVLMDSSLIIDY   71 (213)
T ss_dssp             CEEESCT------TSHHHHHHHHHHHHHTCCCEEECCCTTTT-HHHHHHHCT-TCCSSEEECTTCCEEESHHHHHHH
T ss_pred             EEEecCC------CCCcHHHHHHHHHHCCCCcEEEEecCCCC-cHHHHhcCC-CCCcCeEEeCCCcEEEcHHHHHHH
Confidence            6788876      68999999999999999999998864332 456777665 67899998 688777766655544

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=96.86  E-value=0.0059  Score=42.29  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=44.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEec
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGG   94 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG   94 (174)
                      .-++.|+++      .|+.|..+...|+..    ++.+..+|+..++++    .+.++ ...+|.+++  +|+.+.-
T Consensus        35 ~~vv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~~~~G~~~~~  100 (117)
T 2xc2_A           35 LVVVDFFAT------WCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEET----ARKYN-ISAMPTFIAIKNGEKVGD  100 (117)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHTTSSSEEEEEETTTSHHH----HHHTT-CCSSSEEEEEETTEEEEE
T ss_pred             EEEEEEECC------CCHhHHHHhHHHHHHHHHcCcEEEEEECCccHHH----HHHcC-CCccceEEEEeCCcEEEE
Confidence            345556665      599999998888763    788999999877654    44455 788999877  8887643

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.84  E-value=0.008  Score=40.62  Aligned_cols=59  Identities=14%  Similarity=0.193  Sum_probs=42.3

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-++.|+++      .|++|..+...|+.    +  .+.+..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        22 ~~~v~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~G~~~~   88 (108)
T 2trx_A           22 AILVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYG-IRGIPTLLLFKNGEVAA   88 (108)
T ss_dssp             EEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             eEEEEEECC------CCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHH----HHHcC-CcccCEEEEEeCCEEEE
Confidence            345555555      59999999887765    2  477888999877653    34455 778999987  898653

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=96.84  E-value=0.0077  Score=42.01  Aligned_cols=61  Identities=18%  Similarity=0.233  Sum_probs=43.4

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECC-CCHHHHHHHHHhcCCCCCCcEEEE--CCEEEecc
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVS-LHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGA   95 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~-~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~   95 (174)
                      .-|+.|+++      .|++|+.+...|+.     .++.+..+|+. .+++    +.+.++ ...+|.+++  +|+.++-+
T Consensus        39 ~~vv~f~a~------wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~~----~~~~~~-v~~~Pt~~~~~~G~~~~~~  107 (124)
T 1faa_A           39 PVVLDMFTQ------WCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKT----LAKELG-IRVVPTFKILKENSVVGEV  107 (124)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHH----HHHHHC-CSSSSEEEEEETTEEEEEE
T ss_pred             EEEEEEECC------cCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchHH----HHHHcC-CCeeeEEEEEeCCcEEEEE
Confidence            345556665      59999999888865     36889999997 4444    344455 788999877  89876543

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A*

Probab=96.84  E-value=0.001  Score=52.46  Aligned_cols=68  Identities=7%  Similarity=0.106  Sum_probs=52.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .++||+.+      .+++|.+++.+|+.+||+|+.+.|..+  ...++.++.. ..++|.|.++|..|.....+.+.
T Consensus         3 ~~~Ly~~~------~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~nP-~g~vPvL~~~~~~l~eS~aI~~Y   70 (242)
T 3ubk_A            3 MIKLHGAS------ISNYVNKVKLGILEKGLEYEQIRIAPS--QEEDFLKISP-MGKIPVLEMDGKFIFESGAILEF   70 (242)
T ss_dssp             CEEEESCT------TCHHHHHHHHHHHHHTCCEEEECCCCC--CCHHHHTTST-TCCSCEEEETTEEECCHHHHHHH
T ss_pred             eEEEEeCC------CChHHHHHHHHHHHcCCCcEEEecCCc--cCHHHHhcCC-CCCcCeEEECCceEecHHHHHHH
Confidence            37899886      689999999999999999999998543  2345666654 67999999998877666555443

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=96.83  E-value=0.0021  Score=49.68  Aligned_cols=69  Identities=14%  Similarity=0.223  Sum_probs=53.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +.||+.+      ++++|++|+-+|+.+||+|+.+.|..  .+....++.++.- ..++|.+..||..|.....+.+.
T Consensus         3 mkLY~~~------~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~d~g~~l~eS~aI~~Y   73 (216)
T 3vk9_A            3 IDLYYVP------GSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNP-QHTVPTLVDDGLSIWESRAIITY   73 (216)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCT-TCCSCEEEETTEEECCHHHHHHH
T ss_pred             EEEEeCC------CChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCC-CCccceEecCCceeechHHHHHH
Confidence            6799987      68999999999999999998877643  3344456666654 67899999999988776666554

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=96.83  E-value=0.0073  Score=43.62  Aligned_cols=67  Identities=15%  Similarity=0.114  Sum_probs=53.7

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhC----CCcEEEEECCCCHHHHHHHHHhcCCCC-CCcEEE--ECCEEEecc
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF----KVTFYERDVSLHMEFRDELWSSLSGRV-IPPRLF--IKGRYIGGA   95 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v~~~e~Dv~~~~~~~~el~~~~g~~~-~~P~vF--I~G~~IGG~   95 (174)
                      ...|+|+-.+.     .|+.|..+...|+.+    .++|..+||..++..-.++.+.+| -. ..||++  -||+.+...
T Consensus        24 ~~~vvi~khat-----wCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~-V~h~sPq~il~k~G~~v~~~   97 (112)
T 3iv4_A           24 NKYVFVLKHSE-----TCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTN-VKHESPQAFYFVNGEMVWNR   97 (112)
T ss_dssp             CSEEEEEEECT-----TCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHT-CCCCSSEEEEEETTEEEEEE
T ss_pred             CCCEEEEEECC-----cCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhC-CccCCCeEEEEECCEEEEEe
Confidence            45677777664     699999998888764    799999999988887788888888 65 699985  499887653

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=96.81  E-value=0.0052  Score=43.15  Aligned_cols=70  Identities=20%  Similarity=0.345  Sum_probs=46.4

Q ss_pred             hhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcE
Q 047313           12 KGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-------KVTFYERDVSLHMEFRDELWSSLSGRVIPPR   84 (174)
Q Consensus        12 ~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~   84 (174)
                      +.|++.- ..+..-|+.|+++      .|+.|..+...|+..       ++.|..+|+..++++.+    .++ ...+|.
T Consensus        24 ~~f~~~l-~~~k~vvv~f~a~------~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~----~~~-v~~~Pt   91 (121)
T 2j23_A           24 DQFKQVT-GGDKVVVIDFWAT------WCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQIAQ----EVG-IRAMPT   91 (121)
T ss_dssp             HHHHHHH-SSSSCEEEEEECT------TCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHHHH----HHT-CCSSSE
T ss_pred             HHHHHHH-cCCCEEEEEEECC------CCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHHHH----HcC-CCcccE
Confidence            3454443 2223344555554      699999999888751       38899999988776443    345 678999


Q ss_pred             EEE--CCEEEe
Q 047313           85 LFI--KGRYIG   93 (174)
Q Consensus        85 vFI--~G~~IG   93 (174)
                      +++  +|+.+.
T Consensus        92 ~~~~~~G~~~~  102 (121)
T 2j23_A           92 FVFFKNGQKID  102 (121)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCeEEe
Confidence            876  888654

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=96.81  E-value=0.0018  Score=50.59  Aligned_cols=73  Identities=11%  Similarity=0.044  Sum_probs=55.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l  101 (174)
                      .++||+.+      .+++|.+++.+|..+||+|+.+.|...  .....++.++.. ..++|.|. .||..|.....+.+.
T Consensus        22 m~~Ly~~~------~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vPvL~~~~g~~l~eS~aI~~y   94 (230)
T 4hz2_A           22 SMRIYGMN------GSGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALNA-IGKVPVVVLDDGTALRESNAILLH   94 (230)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHCT-TCCSCEEECTTSCEEECHHHHHHH
T ss_pred             hheeeCCC------CCccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhCC-CCCCCEEEecCCEEeeCHHHHHHH
Confidence            47899986      689999999999999999998888542  223445666655 77999999 788888777666555


Q ss_pred             hhc
Q 047313          102 HEQ  104 (174)
Q Consensus       102 ~e~  104 (174)
                      .+.
T Consensus        95 L~~   97 (230)
T 4hz2_A           95 FAE   97 (230)
T ss_dssp             HHT
T ss_pred             Hhc
Confidence            443

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=96.79  E-value=0.012  Score=39.20  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=43.1

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-++.|+++      .|+.|..+...|+..     ++.+..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        21 ~~~v~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~~~~g~~~~   86 (104)
T 2vim_A           21 LIVVDFFAQ------WCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEEA----AAKYS-VTAMPTFVFIKDGKEVD   86 (104)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             eEEEEEECC------CCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHHH----HHHcC-CccccEEEEEeCCcEEE
Confidence            344446655      699999998888762     788999999877654    34445 778999877  887654

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...

Probab=96.78  E-value=0.0046  Score=47.78  Aligned_cols=70  Identities=17%  Similarity=0.137  Sum_probs=53.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh--cCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS--LSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~--~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .++||+..      .+++|.+++.+|+..|++|+.+.+...+. ..++...  .. ...+|.|..+|..|.....+.+..
T Consensus         3 ~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP-~g~vPvL~~~g~~l~eS~aI~~yL   74 (221)
T 1k3y_A            3 KPKLHYFN------ARGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLM-FQQVPMVEIDGMKLVQTRAILNYI   74 (221)
T ss_dssp             CCEEEEES------SSTTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCT-TSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CcEEEEeC------CCchhHHHHHHHHHcCCCceEEEeCchhH-HHHHhhhcCCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence            47899876      58999999999999999999999864333 3445554  33 668999999998888776665543

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=96.78  E-value=0.0033  Score=43.40  Aligned_cols=76  Identities=14%  Similarity=0.151  Sum_probs=50.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEeccc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGAD   96 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~d   96 (174)
                      -++.|+++      .|+.|..+...|+.      .++.+..+|+..+++    +.+.++ ...+|.+++  +|+.+.-+.
T Consensus        20 ~lv~f~a~------wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~G~~~~~~~   88 (112)
T 2voc_A           20 VLADFWAP------WCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQE----TAGKYG-VMSIPTLLVLKDGEVVETSV   88 (112)
T ss_dssp             EEEEEECT------TBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCS----HHHHTT-CCSBSEEEEEETTEEEEEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHH----HHHHcC-CCcccEEEEEeCCEEEEEEe
Confidence            44455555      59999988887765      258899999987754    344455 778999988  998764332


Q ss_pred             hhhhhhhcCchhHHhhcC
Q 047313           97 EVVGLHEQGKLKKLLEGI  114 (174)
Q Consensus        97 el~~l~e~G~L~~~L~~~  114 (174)
                      ..   ....+|.++|+..
T Consensus        89 G~---~~~~~l~~~l~~~  103 (112)
T 2voc_A           89 GF---KPKEALQELVNKH  103 (112)
T ss_dssp             SC---CCHHHHHHHHHTT
T ss_pred             CC---CCHHHHHHHHHHH
Confidence            21   1223466666543

>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}

Probab=96.77  E-value=0.0033  Score=49.27  Aligned_cols=78  Identities=12%  Similarity=0.152  Sum_probs=57.7

Q ss_pred             hhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE----CC
Q 047313           16 EKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI----KG   89 (174)
Q Consensus        16 ~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI----~G   89 (174)
                      .+.|+.....++||+.+       +++|.+++.+|..+||+|+.+.|...  +....++.++.. ..++|.|.+    ||
T Consensus        13 ~~~~~~~~~~~~Ly~~~-------~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~dg~dG   84 (244)
T 4ikh_A           13 QKWPAQFPEWIQLYSLP-------TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSP-NNKIPAILDPHGPGD   84 (244)
T ss_dssp             GTSCCSSTTSEEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTCT-TSCSCEEEETTCGGG
T ss_pred             ccCcccCCCeeEEEeCC-------CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcCC-CCCCCEEEecCCCCC
Confidence            34555666789999974       79999999999999999998888643  223456666654 678999998    35


Q ss_pred             --EEEeccchhhhh
Q 047313           90 --RYIGGADEVVGL  101 (174)
Q Consensus        90 --~~IGG~del~~l  101 (174)
                        ..|.....+.+.
T Consensus        85 ~~~~l~eS~aI~~y   98 (244)
T 4ikh_A           85 QPLALFESGAILIY   98 (244)
T ss_dssp             CCEEEESHHHHHHH
T ss_pred             CceeEEcHHHHHHH
Confidence              677666655544

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.75  E-value=0.013  Score=42.01  Aligned_cols=58  Identities=14%  Similarity=0.272  Sum_probs=42.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      -|+.|+++      .|++|..+...|+.    +  ++.|..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        53 vvv~f~~~------~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~-v~~~Pt~~~~~~G~~~~  118 (140)
T 1v98_A           53 TLVDFFAP------WCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGL----AARYG-VRSVPTLVLFRRGAPVA  118 (140)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHHH----HHHCC-CCccCEEEEEeCCcEEE
Confidence            44555554      69999999888875    2  478899999887654    44455 778999987  898653

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.72  E-value=0.0057  Score=42.93  Aligned_cols=55  Identities=15%  Similarity=0.207  Sum_probs=41.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~   90 (174)
                      -||.|+++      .|+.|.++...|+.       .++.|..+|+..++++    .+.++ ...+|.+++  +|+
T Consensus        25 vlv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~~~~G~   88 (126)
T 1x5e_A           25 WMIEFYAP------WCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPGL----SGRFI-INALPTIYHCKDGE   88 (126)
T ss_dssp             EEEEEECS------SCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTE
T ss_pred             EEEEEECC------CCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHHH----HHHcC-CcccCEEEEEeCCe
Confidence            45556655      59999999888765       2688999999877653    44455 778999876  887

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli}

Probab=96.72  E-value=0.00061  Score=51.61  Aligned_cols=69  Identities=13%  Similarity=-0.043  Sum_probs=50.5

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l~  102 (174)
                      ++||+.+      .+++|.+++.+|+.+||+|+.+.+... ....++.+... ..++|.|. .||..|.....+.+..
T Consensus         1 m~Ly~~~------~sp~~~~v~~~l~~~gi~~e~~~v~~~-~~~~~~~~~~P-~g~vP~L~~~~g~~l~eS~aI~~yL   70 (202)
T 3r2q_A            1 MKLVGSY------TSPFVRKLSILLLEKGITFEFINELPY-NADNGVAQFNP-LGKVPVLVTEEGECWFDSPIIAEYI   70 (202)
T ss_dssp             CEEEECS------SCHHHHHHHHHHHHTTCCCEEEECCTT-SSSCSCTTTCT-TCCSCEEECTTSCEECSHHHHHHHH
T ss_pred             CEEEeCC------CCcHHHHHHHHHHHcCCCCeEEEecCC-CCcHHHHHhCC-CCCcCeEEecCCcEEecHHHHHHHH
Confidence            4688886      689999999999999999999988643 11223444443 67899999 6887776665554443

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=96.71  E-value=0.0041  Score=48.70  Aligned_cols=70  Identities=13%  Similarity=0.160  Sum_probs=46.5

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC---CCcEEEEECCC---CH----------------------------
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF---KVTFYERDVSL---HM----------------------------   66 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~---~v~~~e~Dv~~---~~----------------------------   66 (174)
                      .++..|++|+.+      .||+|++....|+.+   +|++..+.+..   ++                            
T Consensus        85 ~~k~~vv~F~d~------~Cp~C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~  158 (216)
T 1eej_A           85 QEKHVITVFTDI------TCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSV  158 (216)
T ss_dssp             TCCEEEEEEECT------TCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCC
T ss_pred             CCCEEEEEEECC------CCHHHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCC
Confidence            344567778876      699999988777654   67777766521   11                            


Q ss_pred             ---------HHHHHHHHhcCCCCCCcEEEE-CCEEEeccch
Q 047313           67 ---------EFRDELWSSLSGRVIPPRLFI-KGRYIGGADE   97 (174)
Q Consensus        67 ---------~~~~el~~~~g~~~~~P~vFI-~G~~IGG~de   97 (174)
                               +...++.+.+| -..+|.+|+ ||+.+.|+..
T Consensus       159 ~~~~~~~~v~~~~~l~~~~g-V~gtPt~v~~dG~~~~G~~~  198 (216)
T 1eej_A          159 APASCDVDIADHYALGVQLG-VSGTPAVVLSNGTLVPGYQP  198 (216)
T ss_dssp             CCCCCSCCHHHHHHHHHHHT-CCSSSEEECTTSCEEESCCC
T ss_pred             ChhHHHHHHHHHHHHHHHcC-CCccCEEEEcCCeEecCCCC
Confidence                     11223444456 788999998 8888877643

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=96.71  E-value=0.00073  Score=52.89  Aligned_cols=69  Identities=14%  Similarity=0.066  Sum_probs=50.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      ...||.++      ++|+|++|+.+|..+||+|+.+.|..... .+++.++.- ..++|.+.+ ||..|.....+.+.
T Consensus        22 ~MKLy~~~------~SP~~~rVr~~L~e~gi~~e~~~v~~~~~-~~~~~~~nP-~gkVPvL~~~dG~~l~ES~aI~~Y   91 (225)
T 4glt_A           22 SMKLLYSN------TSPYARKVRVVAAEKRIDVDMVLVVLADP-ECPVADHNP-LGKIPVLILPDGESLYDSRVIVEY   91 (225)
T ss_dssp             CCEEEECS------SCHHHHHHHHHHHHHTCCCEEEECCTTCS-SSCGGGTCT-TCCSCEEECTTSCEECSHHHHHHH
T ss_pred             CceEecCC------CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-CHHHHHhCC-CCCCCEEEeCCCCEEeehHHHHHH
Confidence            35789987      78999999999999999999888853211 124555543 568999987 67777665555444

>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*

Probab=96.71  E-value=0.0036  Score=47.79  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=53.9

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC-----EEEeccchh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG-----RYIGGADEV   98 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G-----~~IGG~del   98 (174)
                      ..++||+.+      .+++|.+++.+|...||+|+.+.+..+.  ..++.+... ...+|.|.++|     ..|.....+
T Consensus         4 ~~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P-~g~vP~L~~~~~~g~~~~l~eS~aI   74 (211)
T 2wb9_A            4 QHFKLWYFQ------FRGRAEPIRLLLTCAGVKFEDYQFTMDQ--WPTIKPTLP-GGRVPLLDVTGPDGKLRRYQESMAI   74 (211)
T ss_dssp             CEEEEEEES------SCGGGHHHHHHHHHTTCCCEEEEECTTT--HHHHGGGSG-GGCSCEEEEECTTSCEEEEESHHHH
T ss_pred             CceEEEEeC------CCCchHHHHHHHHHcCCCceEEEechhh--HHHhCcCCC-CCCCCEEEECCCCccceeecCHHHH
Confidence            358899976      5899999999999999999999887432  255665544 66899999988     888776665


Q ss_pred             hhhh
Q 047313           99 VGLH  102 (174)
Q Consensus        99 ~~l~  102 (174)
                      .+..
T Consensus        75 ~~yL   78 (211)
T 2wb9_A           75 ARLL   78 (211)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.70  E-value=0.011  Score=40.37  Aligned_cols=59  Identities=17%  Similarity=0.180  Sum_probs=41.4

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECC-CCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVS-LHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~-~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-++.|+++      .|+.|..+...|+.     .++.|..+|+. .+.+    +.+.++ ...+|.+++  +|+.+.
T Consensus        26 ~vlv~f~a~------wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~~----~~~~~~-v~~~Pt~~~~~~G~~~~   92 (111)
T 2pu9_C           26 PVVLDMFTQ------WCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENKT----LAKELG-IRVVPTFKILKENSVVG   92 (111)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHH----HHHHHC-CSBSSEEEEESSSSEEE
T ss_pred             EEEEEEECC------cCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchHH----HHHHcC-CCeeeEEEEEeCCcEEE
Confidence            345555555      59999999888865     25889999997 4554    334445 778999877  786543

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=96.70  E-value=0.0033  Score=44.17  Aligned_cols=79  Identities=18%  Similarity=0.167  Sum_probs=50.9

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--C----CEE
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--K----GRY   91 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~----G~~   91 (174)
                      ..-|+.|+++      .|+.|..+...|+.     .++.|..+|+..+++    +.+.++ ...+|.+++  +    |+.
T Consensus        24 ~~vlv~f~a~------wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~-i~~~Pt~~~~~~~~~~G~~   92 (118)
T 2f51_A           24 GLVLVDFFAT------WCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGN----AADAYG-VSSIPALFFVKKEGNEIKT   92 (118)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTT-CCSSSEEEEEEEETTEEEE
T ss_pred             CEEEEEEECC------CCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHhcC-CCCCCEEEEEeCCCCcceE
Confidence            3445566665      59999999888876     478999999988765    444455 778999865  4    665


Q ss_pred             EeccchhhhhhhcCchhHHhhcCCC
Q 047313           92 IGGADEVVGLHEQGKLKKLLEGIPR  116 (174)
Q Consensus        92 IGG~del~~l~e~G~L~~~L~~~~~  116 (174)
                      ++-+....    ..+|++++....+
T Consensus        93 ~~~~~G~~----~~~l~~~~~~~~~  113 (118)
T 2f51_A           93 LDQFVGAD----VSRIKADIEKFKH  113 (118)
T ss_dssp             EEEEESCC----HHHHHHHHHHHC-
T ss_pred             EEeecCCC----HHHHHHHHHHhhh
Confidence            43332221    1246666655443

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster}

Probab=96.70  E-value=0.0037  Score=50.46  Aligned_cols=78  Identities=10%  Similarity=0.084  Sum_probs=53.6

Q ss_pred             CcEEEEEeecC---CCCCCChhHHHHHHHH----HhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccc
Q 047313           24 DSVIFYTTSLR---GIRKTFEDCRTIRFLL----QSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGAD   96 (174)
Q Consensus        24 ~~VvlYttsl~---~ir~~c~~C~~vr~iL----~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~d   96 (174)
                      ..|++|....+   .....||+|.+++.+|    +.+||+|+.+.|.... ...++.++.. ...+|.|..+|..|....
T Consensus        21 ~~i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~-~~~~~~~~nP-~gkVPvL~d~g~~l~ES~   98 (260)
T 2yv7_A           21 PEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQK-PPPDFRTNFE-ATHPPILIDNGLAILENE   98 (260)
T ss_dssp             CEEEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTS-CC-----CCT-TCCSCEEEETTEEECSHH
T ss_pred             ccEEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEecccc-CCHHHHhhCC-CCCCCEEEECCEEEeCHH
Confidence            46999976543   2345799999999999    7889999988875431 1234555544 678999999998887666


Q ss_pred             hhhhhhh
Q 047313           97 EVVGLHE  103 (174)
Q Consensus        97 el~~l~e  103 (174)
                      .+.+..+
T Consensus        99 aI~~YL~  105 (260)
T 2yv7_A           99 KIERHIM  105 (260)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=96.69  E-value=0.0076  Score=42.04  Aligned_cols=60  Identities=22%  Similarity=0.248  Sum_probs=43.4

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      ..-||.|+++      .|+.|..+...|+.     .++.|..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        32 k~vlv~F~a~------wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l----~~~~~-v~~~Pt~~~~~~G~~~~   98 (116)
T 3qfa_C           32 KLVVVDFSAT------WCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQDV----ASECE-VKSMPTFQFFKKGQKVG   98 (116)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHHH----HHHTT-CCSSSEEEEESSSSEEE
T ss_pred             CEEEEEEECC------CCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH----HHHcC-CccccEEEEEeCCeEEE
Confidence            3345556665      59999999988876     3578899999877654    44456 788999877  776554

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.66  E-value=0.0014  Score=46.27  Aligned_cols=52  Identities=21%  Similarity=0.509  Sum_probs=38.4

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|+.|+|+..+....++   ......|+.|+-.|.+   +|+.|.
T Consensus        28 ~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~---~~~~~~C~~C~G~G~~i~~~C~~C~   88 (104)
T 2ctt_A           28 MDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGP---FVMRSTCRRCGGRGSIIISPCVVCR   88 (104)
T ss_dssp             CEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETT---EEEEEECSSSSSSSEECSSCCSSSS
T ss_pred             eeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCC---EEEEEECCcCCCcceECCCcCCCCC
Confidence            45799998887      5889999999776544322   1135789999988887   788883

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=96.65  E-value=0.0016  Score=56.24  Aligned_cols=74  Identities=18%  Similarity=0.154  Sum_probs=55.2

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchh
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEV   98 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del   98 (174)
                      +...++++||+..      .||+|.+++.+|+.+||+|+.+.|... ...+++.+... ..++|.|.+ +|..|.....+
T Consensus       247 ~~~~~~~~L~~~~------~sp~~~rv~~~L~~~gi~y~~~~v~~~-~~~~~~~~~~P-~g~vP~L~~~~g~~l~eS~aI  318 (471)
T 4ags_A          247 MGANGGHVLYSNL------FCPFVDRARLASELRKFQMHIVEVPLH-PQPEWYKYINP-RDTVPALFTPSGEAVHESQLI  318 (471)
T ss_dssp             GGGTTSCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCCS-SCCTTHHHHCT-TCCSCEEECTTSCEEESHHHH
T ss_pred             CCCCCcEEEEecC------CCchHHHHHHHHHHCCCCcEEEEecCC-cCcHHHHHhCC-CCCcCeEEeCCCcEeecHHHH
Confidence            3556789999987      689999999999999999999988654 11233445544 678999997 77777665555


Q ss_pred             hhh
Q 047313           99 VGL  101 (174)
Q Consensus        99 ~~l  101 (174)
                      .+.
T Consensus       319 ~~y  321 (471)
T 4ags_A          319 VQY  321 (471)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*

Probab=96.63  E-value=0.0023  Score=48.93  Aligned_cols=69  Identities=14%  Similarity=0.077  Sum_probs=52.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +++||+.+      .+++|.+++.+|+.+||+|+.+.+....  ..++.+... ...+|.|..+|..|.....+.+..
T Consensus         2 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~yL   70 (208)
T 1tu7_A            2 SYKLTYFS------IRGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQFQ-FGQLPCLYDGDQQIVQSGAILRHL   70 (208)
T ss_dssp             CEEEEEES------SSGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGST-TSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CcEEEEcC------CCcchHHHHHHHHHcCCCceEEEEcHHH--HHHhccCCC-CCCCCEEEECCEEEEcHHHHHHHH
Confidence            47899986      5799999999999999999988886432  124444443 568999999998887776665543

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.63  E-value=0.013  Score=42.36  Aligned_cols=60  Identities=17%  Similarity=0.229  Sum_probs=43.5

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      ..-+|.|+++      .|++|..+...|+.      ..+.|..+|+..++++    .+.++ ...+|.+++  +|+.+.
T Consensus        56 k~vlv~F~a~------wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~l----~~~~~-v~~~Pt~~~~~~G~~~~  123 (148)
T 3p2a_A           56 LPMVIDFWAP------WCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPAL----STRFR-IRSIPTIMLYRNGKMID  123 (148)
T ss_dssp             SCEEEEEECS------SCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEECC------CCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHHH----HHHCC-CCccCEEEEEECCeEEE
Confidence            3345556665      59999999888865      3578899999887754    44455 778998865  888665

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A

Probab=96.60  E-value=0.0012  Score=51.56  Aligned_cols=72  Identities=10%  Similarity=0.004  Sum_probs=53.7

Q ss_pred             cEEEEEeecCCCCCCC-----hhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhh
Q 047313           25 SVIFYTTSLRGIRKTF-----EDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c-----~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~   99 (174)
                      +++||+..      .|     ++|.+++.+|..+||+|+.+.|........++.+... ..++|.|..||..|.....+.
T Consensus        18 ~~~Ly~~~------~s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~   90 (230)
T 2ycd_A           18 TITVFERS------PDGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQP-FGQIPSYEQGDLILFESGAIV   90 (230)
T ss_dssp             EEEEESSC------TTTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTCT-TSCSCEEEETTEEEECHHHHH
T ss_pred             eEEEecCC------CccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcCC-CCCCCEEEECCEEEEcHHHHH
Confidence            69999987      56     8999999999999999999988542112233444443 678999999998888776665


Q ss_pred             hhhh
Q 047313          100 GLHE  103 (174)
Q Consensus       100 ~l~e  103 (174)
                      +..+
T Consensus        91 ~yL~   94 (230)
T 2ycd_A           91 MHIA   94 (230)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=96.59  E-value=0.012  Score=42.19  Aligned_cols=55  Identities=20%  Similarity=0.249  Sum_probs=40.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE----CCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI----KGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI----~G~   90 (174)
                      -||.|+++      .|+.|..+...|+..    ++.|..+|+..+.+    +.+.++ ...+|.+++    +|+
T Consensus        43 vvv~F~a~------wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           43 IVIKFGAV------WCKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPK----LNDQHN-IKALPTFEFYFNLNNE  105 (133)
T ss_dssp             EEEEEECT------TCHHHHHTHHHHHGGGGTEECEEEEEETTTCHH----HHHHTT-CCSSSEEEEEEEETTE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHhcCEEEEEEeccchHH----HHHhcC-CCCCCEEEEEEecCCC
Confidence            45556665      599999999998864    47788889877655    444456 788999865    887

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5

Probab=96.57  E-value=0.0044  Score=49.59  Aligned_cols=70  Identities=11%  Similarity=0.110  Sum_probs=54.7

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .+++||+.+      .++++.+++.+|+.+||+|+.+.+..+.  ..++.+... ...+|.|..||..|.....+.+..
T Consensus        48 ~~~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~e~~~~nP-~gkVPvL~~~g~~l~ES~aI~~YL  117 (249)
T 1m0u_A           48 HSYTLFYFN------VKALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMP-MGQMPVLEVDGKRVHQSISMARFL  117 (249)
T ss_dssp             CCEEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSG-GGCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCeEEEEcC------CcccHHHHHHHHHHcCCCcEEEEeCHHH--HHHHhhcCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence            468999886      5899999999999999999999887432  345655544 568999999998887776665543

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=96.54  E-value=0.0027  Score=49.73  Aligned_cols=68  Identities=18%  Similarity=0.221  Sum_probs=45.3

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC---CCcEEEEECCC---CHH---------------------------
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF---KVTFYERDVSL---HME---------------------------   67 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~---~v~~~e~Dv~~---~~~---------------------------   67 (174)
                      .++..|++|+..      .||+|++....|+.+   +|++..+.+..   ++.                           
T Consensus        85 ~~k~~vv~F~d~------~Cp~C~~~~~~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~  158 (211)
T 1t3b_A           85 NEKHVVTVFMDI------TCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLP  158 (211)
T ss_dssp             TCSEEEEEEECT------TCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCC
T ss_pred             CCCEEEEEEECC------CCHhHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCC
Confidence            344567778876      699999988777653   67777665531   111                           


Q ss_pred             ----------HHHHHHHhcCCCCCCcEEEE-CCEEEecc
Q 047313           68 ----------FRDELWSSLSGRVIPPRLFI-KGRYIGGA   95 (174)
Q Consensus        68 ----------~~~el~~~~g~~~~~P~vFI-~G~~IGG~   95 (174)
                                ...++.+.+| -..+|.+|| ||+.+.|+
T Consensus       159 ~~~~~~~~v~~~~~l~~~~g-V~gTPt~vi~nG~~~~G~  196 (211)
T 1t3b_A          159 KEVKTPNIVKKHYELGIQFG-VRGTPSIVTSTGELIGGY  196 (211)
T ss_dssp             SSCCCSSHHHHHHHHHHHHT-CCSSCEEECTTSCCCCSC
T ss_pred             ChHHHHHHHHHHHHHHHHcC-CCcCCEEEEeCCEEecCC
Confidence                      1122334456 788999999 89887776

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5

Probab=96.54  E-value=0.0021  Score=49.40  Aligned_cols=66  Identities=12%  Similarity=0.026  Sum_probs=51.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      +++||+ +      .+++|.+++.+|+.+||+|+.+.+.   ....++.++.. ...+|.|.. ||..|.....+.+.
T Consensus         3 ~~~Ly~-~------~~~~~~~v~~~l~~~gi~~e~~~~~---~~~~~~~~~nP-~g~vP~L~~~~g~~l~eS~aI~~y   69 (219)
T 1nhy_A            3 QGTLYA-N------FRIRTWVPRGLVKALKLDVKVVTPD---AAAEQFARDFP-LKKVPAFVGPKGYKLTEAMAINYY   69 (219)
T ss_dssp             TCEEEC-C------SSHHHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHCT-TCCSSEEECGGGCEEESHHHHHHH
T ss_pred             ceEEec-C------CCCChHHHHHHHHHcCCCceeeccc---CCCHHHHHHCC-CCCCCeEEcCCCCEEecHHHHHHH
Confidence            478998 4      4899999999999999999999886   22345556654 678999998 88888776655544

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=96.52  E-value=0.0072  Score=47.09  Aligned_cols=77  Identities=9%  Similarity=0.105  Sum_probs=49.8

Q ss_pred             CcEEEEEeecCC---CCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc----------CCCCCCcEEEE--C
Q 047313           24 DSVIFYTTSLRG---IRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL----------SGRVIPPRLFI--K   88 (174)
Q Consensus        24 ~~VvlYttsl~~---ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~----------g~~~~~P~vFI--~   88 (174)
                      .+|++|-.+...   ..+.+|+|.+||.+|..+||+|+.+.|.... ....+..+.          +...++|+|..  +
T Consensus         3 ~pi~lYd~~~~~~~~~~~~SP~~~kvr~~L~~kgi~y~~~~v~~~~-~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~   81 (253)
T 4f03_A            3 QPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPD-IAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNT   81 (253)
T ss_dssp             CCEEEEECCCCGGGTTCCCCHHHHHHHHHHHHHTCCEEEEECCGGG-HHHHHHHHTCCCSEECTTCCEECCSCEEEETTT
T ss_pred             CCeEEeecCCCCCCCCCCcChhHHHHHHHHHHcCCCCEEEEEcccc-chhhhhhcCCCCchhhHhhCCCCccCeEEeCCC
Confidence            469999543210   1235899999999999999999999885421 112222221          11357999987  5


Q ss_pred             CEEEeccchhhhh
Q 047313           89 GRYIGGADEVVGL  101 (174)
Q Consensus        89 G~~IGG~del~~l  101 (174)
                      |..|.....+.+.
T Consensus        82 g~~l~ES~aI~~Y   94 (253)
T 4f03_A           82 KKVVEDSAAIAKY   94 (253)
T ss_dssp             TEEEESHHHHHHH
T ss_pred             CEEEecHHHHHHH
Confidence            6888766555444

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha}

Probab=96.47  E-value=0.0028  Score=48.41  Aligned_cols=67  Identities=9%  Similarity=0.019  Sum_probs=50.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      -++||+.+      .+++|.+++.+|+.+||+|+.+.|... ....++    ....++|.|.++|..|.....+.+..
T Consensus         2 m~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~----~P~g~vP~L~~~~~~l~eS~aI~~yL   68 (214)
T 3cbu_A            2 MLKLCGFA------ASNYYNKVKLALLEKNVPFEEVLAWIG-ETDTTA----TPAGKVPYMITESGSLCESEVINEYL   68 (214)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHHTCCEEEEECCTT-SSCTTT----STTCCSCEEEETTEEECSHHHHHHHH
T ss_pred             eEEEecCC------CCcHhHHHHHHHHhCCCCCEEEecCcc-cCCccc----CCCCCCCEEEECCeeeecHHHHHHHH
Confidence            37899876      689999999999999999999988641 111122    22568999999998887766655543

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=96.44  E-value=0.018  Score=41.01  Aligned_cols=59  Identities=15%  Similarity=0.185  Sum_probs=42.3

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-|+.|+++      .|+.|..+...|+..     ++.|..+|+..+++    +.+.++ ...+|.+++  +|+.+.
T Consensus        48 ~vvv~f~a~------wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~----~~~~~~-v~~~Pt~~~~~~G~~~~  113 (139)
T 3d22_A           48 IVLANFSAR------WCGPSRQIAPYYIELSENYPSLMFLVIDVDELSD----FSASWE-IKATPTFFFLRDGQQVD  113 (139)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTT-CCEESEEEEEETTEEEE
T ss_pred             EEEEEEECC------CCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHH----HHHHcC-CCcccEEEEEcCCeEEE
Confidence            345555555      599999998888762     68899999987765    444455 778998755  787654

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.43  E-value=0.018  Score=41.37  Aligned_cols=70  Identities=9%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|.+..-..+..-||.|+++      .|+.|..+...|+..      .+.|..+|+..++++.+    .++ ...+|.++
T Consensus        15 ~f~~~~~~~~~~vlv~F~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~----~~~-v~~~Pt~~   83 (140)
T 3hz4_A           15 TWSQQVEDSKKPVVVMFYSP------ACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWTAE----KYG-VQGTPTFK   83 (140)
T ss_dssp             HHHHHTTTCSSCEEEEEECT------TCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHHHH----HHT-CCEESEEE
T ss_pred             hHHHHHHhCCCcEEEEEECC------CChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhHHH----HCC-CCcCCEEE
Confidence            45533322344456666666      599999998887652      38899999988776444    445 77899997


Q ss_pred             E--CCEEEe
Q 047313           87 I--KGRYIG   93 (174)
Q Consensus        87 I--~G~~IG   93 (174)
                      +  +|+.+.
T Consensus        84 ~~~~G~~~~   92 (140)
T 3hz4_A           84 FFCHGRPVW   92 (140)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCcEEE
Confidence            7  898764

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A

Probab=96.41  E-value=0.0038  Score=48.35  Aligned_cols=70  Identities=17%  Similarity=0.172  Sum_probs=53.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh--cCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS--LSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~--~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .++||+..      .+++|.+++.+|+..||+|+.+.+...+. ..++.+.  .. ..++|.|..+|..|.....+.+..
T Consensus         3 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~YL   74 (221)
T 1b48_A            3 KPKLYYFN------GRGRMESIRWLLAAAGVEFEEEFLETREQ-YEKMQKDGHLL-FGQVPLVEIDGMMLTQTRAILSYL   74 (221)
T ss_dssp             CCEEEBCS------SCTTTHHHHHHHHHHTCCCCCCBCCCHHH-HHHHHTTTCSS-SSCSCEEEETTEEECCHHHHHHHH
T ss_pred             ceEEEEeC------CCcchHHHHHHHHHcCCCceEEEeCchHh-HHHHHhcCCCC-CCCCCEEEECCEEEecHHHHHHHH
Confidence            57899876      68999999999999999999988864332 3445544  33 568999999998887766665543

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa}

Probab=96.39  E-value=0.0051  Score=46.77  Aligned_cols=70  Identities=10%  Similarity=-0.020  Sum_probs=51.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .++||+.+       .+.|.+++.+|..+||+|+.+.|........++.+... ..++|.+..||..|.....+.+..
T Consensus         2 ~~~Ly~~~-------~s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P-~g~vP~L~~~g~~l~eS~aI~~yL   71 (207)
T 2x64_A            2 HMKLYIMP-------GACSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALNP-SGAVPALQVGDWVLTQNAAILNYI   71 (207)
T ss_dssp             CEEEEECT-------TSTTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTCT-TCCSCEEEETTEEECCHHHHHHHH
T ss_pred             eEEEEcCC-------CCcHHHHHHHHHHcCCCcceEEecccccCChhHHhcCC-CCcCCeEeECCEEEeeHHHHHHHH
Confidence            57899865       24689999999999999999988653212245555544 678999999998887776665543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=96.39  E-value=0.019  Score=38.66  Aligned_cols=61  Identities=18%  Similarity=0.186  Sum_probs=43.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYI   92 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~I   92 (174)
                      .-++.|+++      .|+.|..+...|+.    +     ++.+..+|+..++++    .+..+ ...+|.+++  +|+.+
T Consensus        23 ~~lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l----~~~~~-v~~~Pt~~~~~~g~~~   91 (111)
T 3uvt_A           23 ITFIKFYAP------WCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNI----CSKYS-VRGYPTLLLFRGGKKV   91 (111)
T ss_dssp             EEEEEEECS------SCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEE
T ss_pred             cEEEEEECC------CChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhH----HHhcC-CCcccEEEEEeCCcEE
Confidence            345556665      59999999888765    2     466888898877654    44455 778998866  88766


Q ss_pred             ecc
Q 047313           93 GGA   95 (174)
Q Consensus        93 GG~   95 (174)
                      .-+
T Consensus        92 ~~~   94 (111)
T 3uvt_A           92 SEH   94 (111)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            433

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*

Probab=96.38  E-value=0.0022  Score=49.89  Aligned_cols=69  Identities=10%  Similarity=0.052  Sum_probs=50.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l~  102 (174)
                      ++||+..      .|++|.+++.+|..+||+|+.+.|..... ..++.++.. ..++|.|.+ ||..|.....+.+..
T Consensus         3 ~~Ly~~~------~sp~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~nP-~g~vPvL~~~~g~~l~eS~aI~~yL   72 (226)
T 3tou_A            3 MKLIGSH------ASPYTRKVRVVLAEKKIDYQFVLEDVWNA-DTQIHQFNP-LGKVPCLVMDDGGALFDSRVIAEYA   72 (226)
T ss_dssp             CEEEECS------SCHHHHHHHHHHHHTTCCCEEEECCTTST-TCCGGGTCT-TCCSCEEECTTSCEECSHHHHHHHH
T ss_pred             EEEecCC------CCchHHHHHHHHHHcCCCcEEEecCccCC-cHHHHHhCC-CCCCCEEEeCCCCEeccHHHHHHHH
Confidence            5789886      68999999999999999999998854321 122444443 678999997 777776665554443

>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}

Probab=96.35  E-value=0.009  Score=45.61  Aligned_cols=68  Identities=13%  Similarity=0.162  Sum_probs=51.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEEC---C----EEEeccc
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIK---G----RYIGGAD   96 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~---G----~~IGG~d   96 (174)
                      ++||+.+       +++|.+++.+|+.+||+|+.+.|....  ....++.+... ..++|.|.++   |    ..|....
T Consensus         2 ~~Ly~~~-------s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P-~g~vP~L~~~~~~~dG~~~~l~eS~   73 (215)
T 3gx0_A            2 IDLYFAP-------TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISP-NNKIPAIVDHSPADGGEPLSLFESG   73 (215)
T ss_dssp             EEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTCT-TSCSCEEEESSCTTCCSCEEEESHH
T ss_pred             eEEEeCC-------CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhCC-CCCCCEEEeCCCCCCCCceEEEcHH
Confidence            6788763       799999999999999999999886432  23455666654 6789999998   4    7777766


Q ss_pred             hhhhh
Q 047313           97 EVVGL  101 (174)
Q Consensus        97 el~~l  101 (174)
                      .+.+.
T Consensus        74 aI~~y   78 (215)
T 3gx0_A           74 AILLY   78 (215)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=96.34  E-value=0.014  Score=41.23  Aligned_cols=52  Identities=10%  Similarity=0.180  Sum_probs=38.8

Q ss_pred             CChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEecc
Q 047313           39 TFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGA   95 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~   95 (174)
                      .|+.|+++...|+..      ++.+..+|+..+++    +.+.++ ...+|.+++  +|+.+.-+
T Consensus        53 wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~~-v~~~Pt~~~~~~G~~~~~~  112 (128)
T 3ul3_B           53 WCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNES----LARKFS-VKSLPTIILLKNKTMLARK  112 (128)
T ss_dssp             TCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCHH----HHHHTT-CCSSSEEEEEETTEEEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcC-CCCcCEEEEEECCEEEEEe
Confidence            599999988888652      46788888877664    445556 788999877  89877633

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans}

Probab=96.31  E-value=0.016  Score=47.31  Aligned_cols=77  Identities=13%  Similarity=0.041  Sum_probs=55.1

Q ss_pred             CCcEEEEEeecCC---CCCCChhHHHHHHHH----HhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           23 EDSVIFYTTSLRG---IRKTFEDCRTIRFLL----QSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        23 ~~~VvlYttsl~~---ir~~c~~C~~vr~iL----~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      ...|++|....+.   ....||+|.+++.+|    +.+||+|+.+.|.....  . +.++.- ...+|.|..  +|..|.
T Consensus        17 ~~~i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~--p-fl~~nP-~GkVPvL~d~~~g~~l~   92 (291)
T 2yv9_A           17 KPLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSE--A-FKKNFL-GAQPPIMIEEEKELTYT   92 (291)
T ss_dssp             SCEEEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTCH--H-HHHHHT-TCCSCEEEEGGGTEEEC
T ss_pred             CCCEEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCCh--h-HHhcCC-CCCCCEEEEcCCCeEEe
Confidence            3469999877431   123699999999999    78899999888765422  2 555554 679999998  888887


Q ss_pred             ccchhhhhhh
Q 047313           94 GADEVVGLHE  103 (174)
Q Consensus        94 G~del~~l~e  103 (174)
                      ....+.+..+
T Consensus        93 ES~aI~~YL~  102 (291)
T 2yv9_A           93 DNREIEGRIF  102 (291)
T ss_dssp             SHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            6665555443

>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239}

Probab=96.29  E-value=0.008  Score=47.08  Aligned_cols=66  Identities=17%  Similarity=0.053  Sum_probs=49.9

Q ss_pred             EEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           28 FYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        28 lYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      +|+..       +++|.+++.+|+.+||+|+.+.|...  .....++.++.. ..++|.|.. ||..|.....+.+.
T Consensus         6 Ly~~~-------s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P-~g~vPvL~~~dg~~l~eS~aI~~y   74 (238)
T 4exj_A            6 LYTGP-------TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNP-AGIVPTLVDDKGTPITESNNILLY   74 (238)
T ss_dssp             EEECS-------STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHCT-TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             EeeCC-------CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhCC-CCCCCEEEeCCCcEEeeHHHHHHH
Confidence            88863       79999999999999999999988643  333456666665 779999988 46777766655444

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis}

Probab=96.29  E-value=0.0068  Score=46.59  Aligned_cols=71  Identities=8%  Similarity=-0.064  Sum_probs=49.0

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECC--CCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS--LHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~--~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ++||..+      .+++|.+++.+|+.+||+|+.+.|.  ..++.............++|.|..+|..|.....+.+..
T Consensus         3 ~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d~~~~l~eS~aI~~yL   75 (218)
T 3iso_A            3 PVLGYWK------IRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYI   75 (218)
T ss_dssp             CEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEeC------CCcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhchhcCCCCCCCCeEEECCEEEecHHHHHHHH
Confidence            5787765      5899999999999999999999885  223322211111122457999988888887766655443

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.29  E-value=0.011  Score=42.09  Aligned_cols=59  Identities=12%  Similarity=0.137  Sum_probs=42.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-++.|+++      .|+.|..+...|+.    +  ++.|..+|+..+++    +.+.++ ...+|.+++  +|+.+.
T Consensus        42 ~vlv~F~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~G~~~~  108 (128)
T 2o8v_B           42 AILVDFWAE------WCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYG-IRGIPTLLLFKNGEVAA  108 (128)
T ss_dssp             EEEEEEECS------SCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT----TSGGGT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEEECC------CCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcC-CCccCEEEEEeCCEEEE
Confidence            345555655      59999998877765    2  47788899877654    444455 778999988  998654

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.17  E-value=0.045  Score=40.35  Aligned_cols=69  Identities=14%  Similarity=0.101  Sum_probs=47.5

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|.+.- ..+..-||.|+++      .|+.|..+...|+.      .++.|..+|+..+++    +.+.++ ...+|.++
T Consensus        56 ~f~~~~-~~~~~vlv~F~a~------wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~----l~~~~~-i~~~Pt~~  123 (155)
T 2ppt_A           56 ILARAE-RDDLPLLVDFWAP------WCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPA----VAGRHR-IQGIPAFI  123 (155)
T ss_dssp             HHHHHT-TCSSCEEEEEECT------TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTH----HHHHTT-CCSSSEEE
T ss_pred             HHHHHH-hCCCcEEEEEECC------CCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHH----HHHHcC-CCcCCEEE
Confidence            455544 2233445556655      59999999888864      258899999987765    444556 78899997


Q ss_pred             E--CCEEEe
Q 047313           87 I--KGRYIG   93 (174)
Q Consensus        87 I--~G~~IG   93 (174)
                      +  +|+.+.
T Consensus       124 ~~~~G~~~~  132 (155)
T 2ppt_A          124 LFHKGRELA  132 (155)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCeEEE
Confidence            6  888653

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.14  E-value=0.036  Score=37.07  Aligned_cols=59  Identities=12%  Similarity=0.216  Sum_probs=41.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEec
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG   94 (174)
                      -++.|+++      .|++|..+...|+.    +  .+.+..+|+..++++.    +.++ ...+|.++  -+|+.+.-
T Consensus        24 ~lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~~-i~~~Pt~~~~~~g~~~~~   90 (109)
T 3tco_A           24 VLVDCWAE------WCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKIA----DKYS-VLNIPTTLIFVNGQLVDS   90 (109)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHHH----HHTT-CCSSSEEEEEETTEEEEE
T ss_pred             EEEEEECC------CCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHHH----HhcC-cccCCEEEEEcCCcEEEe
Confidence            35555555      69999999877764    2  4779999998877643    4445 77899954  48876653

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=96.11  E-value=0.027  Score=41.84  Aligned_cols=38  Identities=18%  Similarity=0.100  Sum_probs=26.9

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHH----HHHHhC----CCcEEEEECC
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIR----FLLQSF----KVTFYERDVS   63 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr----~iL~~~----~v~~~e~Dv~   63 (174)
                      |.++-.|++|+..      .||+|....    .+++.+    .|++..+++.
T Consensus        25 ~~a~v~i~~f~D~------~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           25 SNAPVKMIEFINV------RCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             TTCSEEEEEEECT------TCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCCCeEEEEEECC------CCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            3444567788876      799999887    455554    5888888763

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.09  E-value=0.055  Score=37.30  Aligned_cols=65  Identities=14%  Similarity=0.076  Sum_probs=43.8

Q ss_pred             hhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE
Q 047313           12 KGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL   85 (174)
Q Consensus        12 ~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v   85 (174)
                      ..|.+..-..+..-++.|+++      .|+.|..+...|+.      .++.|..+|+..++++    .+.++ ...+|.+
T Consensus        11 ~~f~~~~~~~~~~~lv~f~a~------~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~   79 (122)
T 3aps_A           11 QTFNEKVLQGKTHWVVDFYAP------WCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQT----CQKAG-IKAYPSV   79 (122)
T ss_dssp             HHHHHHTTTCSSCEEEEEECT------TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHH----HHHTT-CCSSSEE
T ss_pred             HHHHHHHhcCCCeEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHHH----HHHcC-CCccceE
Confidence            345433322233455666665      59999999888875      2688999999887654    44456 7789998


Q ss_pred             EE
Q 047313           86 FI   87 (174)
Q Consensus        86 FI   87 (174)
                      ++
T Consensus        80 ~~   81 (122)
T 3aps_A           80 KL   81 (122)
T ss_dssp             EE
T ss_pred             EE
Confidence            65

>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}

Probab=96.08  E-value=0.013  Score=47.68  Aligned_cols=73  Identities=8%  Similarity=0.102  Sum_probs=53.3

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECC---
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKG---   89 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G---   89 (174)
                      .+...++||+.       .++++.+++.+|+..      ||+|+.+.|....  ....++.++.. ...+|.|..+|   
T Consensus        40 ~~~~~~~Ly~~-------~sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~nP-~gkVPvL~~~~g~~  111 (288)
T 3c8e_A           40 VGKHPLQLYSL-------GTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNP-NSKIPALRDHTHNP  111 (288)
T ss_dssp             CCSSSEEEEEC-------SSHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHCT-TCCSCEEEETTSSS
T ss_pred             CCCCceEEecC-------CCCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhCC-CCCCCEEEeCCCCC
Confidence            34567999975       489999999999998      9999998886422  22345666654 67999999875   


Q ss_pred             -EEEeccchhhhh
Q 047313           90 -RYIGGADEVVGL  101 (174)
Q Consensus        90 -~~IGG~del~~l  101 (174)
                       ..|.....|.+.
T Consensus       112 ~~~l~ES~aI~~Y  124 (288)
T 3c8e_A          112 PIRVFESGSILLY  124 (288)
T ss_dssp             CEEEESHHHHHHH
T ss_pred             ceEEeCHHHHHHH
Confidence             677666555444

>1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1

Probab=96.07  E-value=0.0049  Score=41.04  Aligned_cols=38  Identities=26%  Similarity=0.682  Sum_probs=31.5

Q ss_pred             CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      ..|..|.|.+.+           +|+.|+|+.++.           ..+|+.|+-.|.++
T Consensus        29 ~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~-----------~~~C~~C~G~G~~~   77 (79)
T 1exk_A           29 QTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-----------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             EECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-----------SSBCGGGTTSSEEE
T ss_pred             CCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEEC-----------CCcCCCCCCeEEEe
Confidence            479999999865           899999998873           35799999988764

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.03  E-value=0.035  Score=38.79  Aligned_cols=69  Identities=13%  Similarity=0.140  Sum_probs=43.8

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh----------CCCcEEEEECCCCHHHHHHHHHhcCCCCCC
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----------FKVTFYERDVSLHMEFRDELWSSLSGRVIP   82 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~   82 (174)
                      .|.+.-...+..-+|.|+++      .|++|..+...|+.          ..+.|..+|+..++++.    +.++ ...+
T Consensus        16 ~~~~~~~~~~~~~lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~----~~~~-v~~~   84 (133)
T 1x5d_A           16 SFDKNVLDSEDVWMVEFYAP------WCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQVLA----SRYG-IRGF   84 (133)
T ss_dssp             HHHHHTTTSSSEEEEEEECT------TCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCHHH----HHHT-CCSS
T ss_pred             hHHHHHhcCCCeEEEEEECC------CCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHHHH----HhCC-CCee
Confidence            45444322233345555555      59999987766643          35788999998776543    3345 7789


Q ss_pred             cEEEE--CCEEE
Q 047313           83 PRLFI--KGRYI   92 (174)
Q Consensus        83 P~vFI--~G~~I   92 (174)
                      |.+++  +|+.+
T Consensus        85 Pt~~~~~~g~~~   96 (133)
T 1x5d_A           85 PTIKIFQKGESP   96 (133)
T ss_dssp             SEEEEEETTEEE
T ss_pred             CeEEEEeCCCce
Confidence            99866  77754

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.02  E-value=0.014  Score=41.48  Aligned_cols=55  Identities=15%  Similarity=0.138  Sum_probs=39.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-------C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-------F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~   90 (174)
                      -||.|+++      .|+.|+.+...|+.       .  .+.+..+|+..+.+    +.+.++ ...+|.+++  +|+
T Consensus        37 vlv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~G~  102 (140)
T 2dj1_A           37 VLLEFYAP------WCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASM----LASKFD-VSGYPTIKILKKGQ  102 (140)
T ss_dssp             EEEEECCT------TCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHH----HHHHTT-CCSSSEEEEEETTE
T ss_pred             EEEEEECC------CCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHH----HHHHCC-CCccCeEEEEECCc
Confidence            34455554      59999988777654       1  28888999987754    444556 778999977  887

>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*

Probab=95.97  E-value=0.018  Score=44.33  Aligned_cols=72  Identities=14%  Similarity=0.010  Sum_probs=50.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH----HHHHHHHHhc--C-CCCCCcEEEECCEEEeccchh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM----EFRDELWSSL--S-GRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~----~~~~el~~~~--g-~~~~~P~vFI~G~~IGG~del   98 (174)
                      ++||+..      .+++|.+++.+|+.+||+|+.+.|....    ...+++....  | ...++|.|..||..|.....+
T Consensus         2 ~~L~~~~------~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI   75 (219)
T 1gsu_A            2 VTLGYWD------IRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLIDGDVKLTQSNAI   75 (219)
T ss_dssp             EEEEEES------SSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTHHHHTTGGGSCCSSCCSSEEEETTEEEESHHHH
T ss_pred             cEEEEeC------CCchhHHHHHHHHHcCCCceEEEeccCcccccchhhHhhhcccCCCCCCCCCEEEECCEEEecHHHH
Confidence            4677775      5799999999999999999988876431    1123343332  2 255899999888888777666


Q ss_pred             hhhhh
Q 047313           99 VGLHE  103 (174)
Q Consensus        99 ~~l~e  103 (174)
                      .+..+
T Consensus        76 ~~yL~   80 (219)
T 1gsu_A           76 LRYIA   80 (219)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55443

>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae}

Probab=95.95  E-value=0.011  Score=45.42  Aligned_cols=70  Identities=10%  Similarity=0.009  Sum_probs=52.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~---~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .++||+.+       .+.+.+++.+|+.+||+|+.+.|....   ....++.+... ..++|.|..+|..|.....+.+.
T Consensus         3 ~~~Ly~~~-------~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l~eS~aI~~y   74 (217)
T 4hz4_A            3 MITLHYLK-------QSCSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQHP-LGKAPVLQDGDLVLAEGNAIIQH   74 (217)
T ss_dssp             CEEEEEES-------SSTTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTST-TCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeecC-------CCcHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcCC-CCCCCEEEECCEeeecHHHHHHH
Confidence            37899875       246999999999999999988885432   12345666654 67899999999988777666554


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        75 L   75 (217)
T 4hz4_A           75 L   75 (217)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=95.90  E-value=0.032  Score=40.92  Aligned_cols=54  Identities=15%  Similarity=0.158  Sum_probs=37.7

Q ss_pred             CChhHHHHHHHH---H------hCCCcEEEEECCCCH-------HHHHHHHHhcCCCCCCcEEEE---CCEEEe
Q 047313           39 TFEDCRTIRFLL---Q------SFKVTFYERDVSLHM-------EFRDELWSSLSGRVIPPRLFI---KGRYIG   93 (174)
Q Consensus        39 ~c~~C~~vr~iL---~------~~~v~~~e~Dv~~~~-------~~~~el~~~~g~~~~~P~vFI---~G~~IG   93 (174)
                      .|+.|......|   .      ..++.+..+|+..+.       ....++.+.++ ...+|.++|   +|+.+.
T Consensus        59 wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l~~~~~-v~~~Pt~~~~d~~G~~~~  131 (154)
T 2ju5_A           59 WCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQELKAQYK-VTGFPELVFIDAEGKQLA  131 (154)
T ss_dssp             TCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHHHHHTT-CCSSSEEEEECTTCCEEE
T ss_pred             CCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHHHHHcC-CCCCCEEEEEcCCCCEEE
Confidence            499999888666   2      135678888887653       33456667777 788999865   687665

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=95.89  E-value=0.015  Score=45.08  Aligned_cols=54  Identities=19%  Similarity=0.250  Sum_probs=41.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR   90 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~   90 (174)
                      |+.|+++      .|++|..+...|+..     ++.+..+|+..+++    +.+.++ ...+|+++++|+
T Consensus       140 ~v~F~a~------wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~G~  198 (229)
T 2ywm_A          140 IWVFVTT------SCGYCPSAAVMAWDFALANDYITSKVIDASENQD----LAEQFQ-VVGVPKIVINKG  198 (229)
T ss_dssp             EEEEECT------TCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHH----HHHHTT-CCSSSEEEEGGG
T ss_pred             EEEEECC------CCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHHcC-CcccCEEEECCE
Confidence            3447776      599999999888763     68889999987665    444456 778999999886

>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*

Probab=95.84  E-value=0.014  Score=46.05  Aligned_cols=69  Identities=9%  Similarity=0.093  Sum_probs=51.0

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--HHHHHHHHhcCCCCCCcEEEECC---EEEeccchhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--EFRDELWSSLSGRVIPPRLFIKG---RYIGGADEVVG  100 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~~~~el~~~~g~~~~~P~vFI~G---~~IGG~del~~  100 (174)
                      ++||+.+       +++|.+++.+|..+||+|+.+.|....  ....++.++.. ..++|.|.+++   ..|.....|.+
T Consensus         4 ~~Ly~~~-------sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP-~g~vPvL~~~dg~~~~l~eS~aI~~   75 (244)
T 4ecj_A            4 IDLYTAA-------TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINP-NGRIPAIVDRDNDDFAVFESGAILI   75 (244)
T ss_dssp             EEEEECS-------SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCT-TCCSCEEEEGGGTTEEEESHHHHHH
T ss_pred             EEEecCC-------CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcCC-CCCCCEEEECCCCeEEEecHHHHHH
Confidence            7889753       899999999999999999999886432  23355666654 67899999864   46766655554


Q ss_pred             hh
Q 047313          101 LH  102 (174)
Q Consensus       101 l~  102 (174)
                      ..
T Consensus        76 YL   77 (244)
T 4ecj_A           76 YL   77 (244)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=95.82  E-value=0.086  Score=36.32  Aligned_cols=60  Identities=15%  Similarity=0.270  Sum_probs=39.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHH-------------------HHhcCCCC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDEL-------------------WSSLSGRV   80 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el-------------------~~~~g~~~   80 (174)
                      .++.|+.+      .|+.|......|+..     ++.+..+++..+.+...++                   .+.++ ..
T Consensus        28 ~ll~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-i~  100 (136)
T 1zzo_A           28 AVLWFWAP------WCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFG-VT  100 (136)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTT-CC
T ss_pred             EEEEEEcC------CChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcC-CC
Confidence            44445544      699999887777653     6888888886654433332                   23334 56


Q ss_pred             CCcEEEE---CCEE
Q 047313           81 IPPRLFI---KGRY   91 (174)
Q Consensus        81 ~~P~vFI---~G~~   91 (174)
                      .+|.++|   +|+.
T Consensus       101 ~~P~~~~id~~g~i  114 (136)
T 1zzo_A          101 QQPAYAFVDPHGNV  114 (136)
T ss_dssp             SSSEEEEECTTCCE
T ss_pred             CCceEEEECCCCCE
Confidence            7899876   7776

>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A*

Probab=95.80  E-value=0.027  Score=43.21  Aligned_cols=71  Identities=8%  Similarity=-0.092  Sum_probs=48.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh--cC-CCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS--LS-GRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~--~g-~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +++||..+      .++++.+++.+|..+||+|+.+.|.... ..+.+...  .+ ...++|.+..||..|.....+.+.
T Consensus         1 ~~~L~y~~------~~~~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~Y   73 (216)
T 2fhe_A            1 PAKLGYWK------IRGLQQPVRLLLEYLGEKYEEQIYERDD-GEKWFSKKFELGLDLPNLPYYIDDKCKLTQSLAILRY   73 (216)
T ss_dssp             CEEEEEES------SSTTTHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHTTTSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             CcEEEEcC------CCchhHHHHHHHHHcCCCceEEeeCCCc-hhhhhccccccCCCCCCCCEEEECCEEEEeHHHHHHH
Confidence            36787766      5799999999999999999998886531 01122221  12 256899998788777766665554


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        74 L   74 (216)
T 2fhe_A           74 I   74 (216)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=95.78  E-value=0.045  Score=37.97  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=41.5

Q ss_pred             cEEE-EEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEe
Q 047313           25 SVIF-YTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIG   93 (174)
Q Consensus        25 ~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IG   93 (174)
                      .|+| |+++|      |+.|..+...|+.     .++.|..+|+..++++    .+.++ -..+|+++  -+|+.+.
T Consensus        22 ~vvv~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l----~~~~~-V~~~PT~~~~~~G~~v~   87 (105)
T 3zzx_A           22 LVVIDFYATW------CGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDI----AQDNQ-IACMPTFLFMKNGQKLD   87 (105)
T ss_dssp             EEEEEEECTT------CHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHHH----HHHTT-CCBSSEEEEEETTEEEE
T ss_pred             EEEEEEECCC------CCCccCCCcchhhhhhccCCeEEEEEecccCHHH----HHHcC-CCeecEEEEEECCEEEE
Confidence            3444 66664      9999999988865     3567888999877664    44456 78899874  4887654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=95.76  E-value=0.099  Score=36.98  Aligned_cols=53  Identities=13%  Similarity=0.330  Sum_probs=38.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      .-||.|+++      .|++|..+...|+.    +  .+.+..+|+..++++    .+.++ ...+|.+++
T Consensus        53 ~vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~-v~~~Pt~~~  111 (141)
T 3hxs_A           53 PAIVDFYAD------WCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPEL----ARDFG-IQSIPTIWF  111 (141)
T ss_dssp             CEEEEEECT------TCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTT-CCSSSEEEE
T ss_pred             EEEEEEECC------CCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHHH----HHHcC-CCCcCEEEE
Confidence            344555555      59999998877764    3  478899999887654    44456 788999865

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=95.71  E-value=0.06  Score=38.41  Aligned_cols=63  Identities=14%  Similarity=0.077  Sum_probs=42.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----CCCcEEEEECCCCH-----HHHHHHHHhcCCCCCCcEEEE--CCEEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----FKVTFYERDVSLHM-----EFRDELWSSLSGRVIPPRLFI--KGRYI   92 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~v~~~e~Dv~~~~-----~~~~el~~~~g~~~~~P~vFI--~G~~I   92 (174)
                      .-+|.|+++      .|+.|......|+.    +++.|..+|+..+.     +...++.+.++ ...+|.+++  +|+.+
T Consensus        33 ~vlv~F~a~------wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~-v~~~Pt~~~~~~G~~v  105 (135)
T 3emx_A           33 DAILAVYSK------TCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAG-VEGTPTLVFYKEGRIV  105 (135)
T ss_dssp             SEEEEEEET------TCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHT-CCSSSEEEEEETTEEE
T ss_pred             cEEEEEECC------cCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcC-CceeCeEEEEcCCEEE
Confidence            344455555      59999998877764    46888999985431     22344555666 788998755  78765


Q ss_pred             e
Q 047313           93 G   93 (174)
Q Consensus        93 G   93 (174)
                      .
T Consensus       106 ~  106 (135)
T 3emx_A          106 D  106 (135)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ...

Probab=95.71  E-value=0.024  Score=43.48  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=49.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH--H-HHHH-HHHhc--C-CCCCCcEEEECCEEEeccchh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM--E-FRDE-LWSSL--S-GRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~--~-~~~e-l~~~~--g-~~~~~P~vFI~G~~IGG~del   98 (174)
                      ++||+..      .+++|.+++.+|+.+||+|+.+.|....  + .+.+ +....  | ....+|.|..+|..|.....+
T Consensus         3 ~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~d~~~~l~eS~aI   76 (218)
T 2c4j_A            3 MTLGYWN------IRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAI   76 (218)
T ss_dssp             EEEEEES------SSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHH
T ss_pred             cEEEEeC------CCchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEEECCeEeeeHHHH
Confidence            6788876      5899999999999999999988886431  1 1222 22222  1 145799998888888777666


Q ss_pred             hhhh
Q 047313           99 VGLH  102 (174)
Q Consensus        99 ~~l~  102 (174)
                      .+..
T Consensus        77 ~~yL   80 (218)
T 2c4j_A           77 LRYI   80 (218)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A*

Probab=95.69  E-value=0.014  Score=44.41  Aligned_cols=57  Identities=12%  Similarity=0.131  Sum_probs=43.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~   90 (174)
                      .++||+..      .++++.+++.+|+..||+|+.+.+....  ..++..... ..++|.|.++|.
T Consensus         5 ~~~Ly~~~------~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P-~g~vP~L~~~~~   61 (211)
T 1oe8_A            5 HIKVIYFN------GRGRAESIRMTLVAAGVNYEDERISFQD--WPKIKPTIP-GGRLPAVKITDN   61 (211)
T ss_dssp             EEEEEESC------TTSTTHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGST-TSCSCEEEEECT
T ss_pred             ceEEEEeC------CCChHHHHHHHHHHcCCCceEEEechHh--HHHhcccCC-CCCCCEEEECCc
Confidence            58898876      5899999999999999999999986532  234444443 678999988653

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=95.67  E-value=0.022  Score=40.18  Aligned_cols=58  Identities=17%  Similarity=0.291  Sum_probs=40.6

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHH--h------CCCcEEEEEC---CCCHHHHHHHHHhcCCC---CCCcEEEE--
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQ--S------FKVTFYERDV---SLHMEFRDELWSSLSGR---VIPPRLFI--   87 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~--~------~~v~~~e~Dv---~~~~~~~~el~~~~g~~---~~~P~vFI--   87 (174)
                      .-+|.|+++      .|++|..+...|+  .      .++.+..+|+   ..+.+    +.+.++ .   ..+|.+++  
T Consensus        31 ~vlv~f~a~------wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~----l~~~~~-v~~~~~~Pt~~~~d   99 (133)
T 3fk8_A           31 PTLLVFGAN------WCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNLE----LSQAYG-DPIQDGIPAVVVVN   99 (133)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSHH----HHHHTT-CGGGGCSSEEEEEC
T ss_pred             cEEEEEcCC------CCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchHH----HHHHhC-CccCCccceEEEEC
Confidence            345556655      5999999998887  2      3678889999   55444    444555 5   78999864  


Q ss_pred             -CCEEE
Q 047313           88 -KGRYI   92 (174)
Q Consensus        88 -~G~~I   92 (174)
                       +|+.+
T Consensus       100 ~~G~~~  105 (133)
T 3fk8_A          100 SDGKVR  105 (133)
T ss_dssp             TTSCEE
T ss_pred             CCCCEE
Confidence             77766

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=95.65  E-value=0.031  Score=39.30  Aligned_cols=65  Identities=12%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             CChhHHHHHHHHHh------CCCcEEEEECC-------CCHHHHHHHHHhcCCCCCCcEEEE--CCEEEeccchhhhhhh
Q 047313           39 TFEDCRTIRFLLQS------FKVTFYERDVS-------LHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGADEVVGLHE  103 (174)
Q Consensus        39 ~c~~C~~vr~iL~~------~~v~~~e~Dv~-------~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~del~~l~e  103 (174)
                      .|+.|..+...|+.      .++.|..+|+.       .+..    +.+.++ ...+|.+++  ++..+.|+...    .
T Consensus        42 wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~----~~~~~~-i~~~Pt~~~~~~~~~~~g~~~~----~  112 (123)
T 1wou_A           42 WCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND----FRKNLK-VTAVPTLLKYGTPQKLVESECL----Q  112 (123)
T ss_dssp             SCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH----HHHHHC-CCSSSEEEETTSSCEEEGGGGG----C
T ss_pred             cCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHH----HHHHCC-CCeeCEEEEEcCCceEeccccC----C
Confidence            49999999988876      26788999994       4444    333355 788999976  33334343321    1


Q ss_pred             cCchhHHhh
Q 047313          104 QGKLKKLLE  112 (174)
Q Consensus       104 ~G~L~~~L~  112 (174)
                      ..+|.++|+
T Consensus       113 ~~~l~~~i~  121 (123)
T 1wou_A          113 ANLVEMLFS  121 (123)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            224666654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=95.65  E-value=0.049  Score=43.31  Aligned_cols=36  Identities=17%  Similarity=0.079  Sum_probs=25.6

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHH----HhCCCcEEEEECC
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLL----QSFKVTFYERDVS   63 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL----~~~~v~~~e~Dv~   63 (174)
                      ++..|++|+..      .||+|.+....|    +..+|+|..+++.
T Consensus        97 ak~~v~~F~D~------~Cp~C~~~~~~l~~~~~~g~v~v~~~~~p  136 (241)
T 1v58_A           97 APVIVYVFADP------FCPYCKQFWQQARPWVDSGKVQLRTLLVG  136 (241)
T ss_dssp             CSEEEEEEECT------TCHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             CCeEEEEEECC------CChhHHHHHHHHHHHHhCCcEEEEEEECC
Confidence            33467778876      799999986554    4445888888773

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}

Probab=95.64  E-value=0.0095  Score=45.91  Aligned_cols=69  Identities=12%  Similarity=-0.012  Sum_probs=52.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---------H----HHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---------M----EFRDELWSSLSGRVIPPRLFIKGRYI   92 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---------~----~~~~el~~~~g~~~~~P~vFI~G~~I   92 (174)
                      ++||+.+      .+ ++.+++.+|+.+||+|+.+.|...         +    ....++.++.. ..++|.|..+|..|
T Consensus         3 ~~Ly~~~------~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~nP-~g~vP~L~~~g~~l   74 (225)
T 3lsz_A            3 LKIYGVY------RS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNP-LGQIPCLEEEGLIL   74 (225)
T ss_dssp             CEEESCS------SS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTCT-TCCSCEEEETTEEE
T ss_pred             EEEEeCC------CC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhCc-CCCCCeEEECCEEE
Confidence            6789886      56 999999999999999999888531         0    13345666654 67999999999988


Q ss_pred             eccchhhhhh
Q 047313           93 GGADEVVGLH  102 (174)
Q Consensus        93 GG~del~~l~  102 (174)
                      .....+.+..
T Consensus        75 ~eS~aI~~yL   84 (225)
T 3lsz_A           75 TESLAITLHI   84 (225)
T ss_dssp             ESHHHHHHHH
T ss_pred             EcHHHHHHHH
Confidence            8776665543

>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*

Probab=95.57  E-value=0.0042  Score=47.37  Aligned_cols=69  Identities=12%  Similarity=0.034  Sum_probs=47.9

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEE--EECCCCH-HHHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYE--RDVSLHM-EFRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e--~Dv~~~~-~~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l  101 (174)
                      ++||+.+      .+++|.+++.+|+.+||+|+.  +|+...+ ....++.++.. ..++|.|. .+|..|.....+.+.
T Consensus         3 ~~Ly~~~------~s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~~g~~l~eS~aI~~y   75 (214)
T 4id0_A            3 LTLFHNP------ASPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDNP-LGKIPALRLDNGQVLYDSRVILDY   75 (214)
T ss_dssp             EEEEECS------SCHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTCT-TCCSSEEECTTSCEECSHHHHHHH
T ss_pred             eEEecCC------CCChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcCC-CcCCCeEEecCCcEeecHHHHHHH
Confidence            7899987      689999999999999999644  5554222 12233444443 67899999 678777666555444

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=95.57  E-value=0.034  Score=38.64  Aligned_cols=61  Identities=16%  Similarity=0.254  Sum_probs=39.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHH------------------HHHhcCCCCC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDE------------------LWSSLSGRVI   81 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~e------------------l~~~~g~~~~   81 (174)
                      .|+.|+.+      .|+.|......|+..     ++.+..+++..+++..++                  +.+.++ ...
T Consensus        27 ~lv~f~~~------~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-i~~   99 (136)
T 1lu4_A           27 AVLWFWTP------WCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN-VPW   99 (136)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTT-CCS
T ss_pred             EEEEEECC------cChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcC-CCC
Confidence            44455554      699999877776542     688888888765443333                  233344 678


Q ss_pred             CcEEEE---CCEEE
Q 047313           82 PPRLFI---KGRYI   92 (174)
Q Consensus        82 ~P~vFI---~G~~I   92 (174)
                      +|.+++   +|+.+
T Consensus       100 ~P~~~lid~~G~i~  113 (136)
T 1lu4_A          100 QPAFVFYRADGTST  113 (136)
T ss_dssp             SSEEEEECTTSCEE
T ss_pred             CCEEEEECCCCcEE
Confidence            899876   67654

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=95.49  E-value=0.077  Score=37.70  Aligned_cols=57  Identities=12%  Similarity=0.343  Sum_probs=40.8

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE---CCEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI---KGRY   91 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI---~G~~   91 (174)
                      .-||.|+++      .|++|.++...|+.    +  .+.+..+|+..++++    .+.++ ...+|.+++   +|+.
T Consensus        40 ~~lv~f~a~------wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~-v~~~Pt~~~~~~~G~~  105 (136)
T 2l5l_A           40 PAIVDFYAD------WCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQEL----AGAFG-IRSIPSILFIPMEGKP  105 (136)
T ss_dssp             CEEEEEECT------TSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTT-CCSSCEEEEECSSSCC
T ss_pred             EEEEEEECC------cCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHHH----HHHcC-CCCCCEEEEECCCCcE
Confidence            345566665      59999999888865    2  488999999887654    44455 778999864   5654

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=95.45  E-value=0.056  Score=38.43  Aligned_cols=85  Identities=11%  Similarity=0.143  Sum_probs=50.4

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHH-------Hh-CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE---CCEE
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLL-------QS-FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI---KGRY   91 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL-------~~-~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI---~G~~   91 (174)
                      ..-|+.|+++      .|+.|..+...|       +. .++.+..+|+..+.....++.+.++ ...+|.+++   +|+.
T Consensus        32 k~vlv~F~a~------wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~-v~~~Pt~~~~d~~G~~  104 (134)
T 2fwh_A           32 KPVMLDLYAD------WCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN-VLGLPTILFFDGQGQE  104 (134)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTT-CCSSSEEEEECTTSCB
T ss_pred             CcEEEEEECC------CCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcC-CCCCCEEEEECCCCCE
Confidence            3445556655      599999976443       22 3588899999766455566777777 888999864   5655


Q ss_pred             EeccchhhhhhhcCchhHHhhcCC
Q 047313           92 IGGADEVVGLHEQGKLKKLLEGIP  115 (174)
Q Consensus        92 IGG~del~~l~e~G~L~~~L~~~~  115 (174)
                      +.. ..+.......+|.++|+.++
T Consensus       105 v~~-~~~~G~~~~~~l~~~l~~~~  127 (134)
T 2fwh_A          105 HPQ-ARVTGFMDAETFSAHLRDRQ  127 (134)
T ss_dssp             CGG-GCBCSCCCHHHHHHHHHHC-
T ss_pred             eee-eeeeeccCHHHHHHHHHhcC
Confidence            410 00111112235666666554

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.45  E-value=0.076  Score=36.99  Aligned_cols=64  Identities=8%  Similarity=0.067  Sum_probs=42.1

Q ss_pred             hhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE
Q 047313           13 GYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF   86 (174)
Q Consensus        13 ~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF   86 (174)
                      .|.+.-...+..-+|.|+++      .|++|..+...|+.    +  .+.+..+|+..+.++.+    .++ ...+|.++
T Consensus        26 ~f~~~~~~~~~~~lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~----~~~-v~~~Pt~~   94 (130)
T 2dml_A           26 NFNREVIQSDGLWLVEFYAP------WCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQSLGG----QYG-VQGFPTIK   94 (130)
T ss_dssp             THHHHTTTCSSCEEEEEECT------TCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHHHHH----HHT-CCSSSEEE
T ss_pred             HHHHHHhcCCCeEEEEEECC------CCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHHHHH----HcC-CCccCEEE
Confidence            45553322233455666665      59999988777754    2  27889999988766443    345 77899997


Q ss_pred             E
Q 047313           87 I   87 (174)
Q Consensus        87 I   87 (174)
                      +
T Consensus        95 ~   95 (130)
T 2dml_A           95 I   95 (130)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.41  E-value=0.013  Score=41.18  Aligned_cols=38  Identities=26%  Similarity=0.651  Sum_probs=30.7

Q ss_pred             CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      ..|..|+|.+.+           +|+.|+|+.+++           ..+|+.|+-.|.++
T Consensus        46 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~G~v~   94 (104)
T 2ctt_A           46 QHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII-----------ISPCVVCRGAGQAK   94 (104)
T ss_dssp             EECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC-----------SSCCSSSSSCSEEC
T ss_pred             ccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC-----------CCcCCCCCCeeEEE
Confidence            469999999854           899999998874           35799999888764

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=95.41  E-value=0.013  Score=39.86  Aligned_cols=56  Identities=7%  Similarity=0.091  Sum_probs=39.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh---------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS---------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRY   91 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~---------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~   91 (174)
                      -++.|+++      .|+.|.++...|+.         ..+.+..+|+..++.+    .+.++ ...+|.+++  +|+.
T Consensus        27 ~lv~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~~~~g~~   93 (120)
T 1mek_A           27 LLVEFYAP------WCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDL----AQQYG-VRGYPTIKFFRNGDT   93 (120)
T ss_dssp             EEEEEECS------SCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSS----HHHHT-CCSSSEEEEEESSCS
T ss_pred             EEEEEECC------CCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHH----HHHCC-CCcccEEEEEeCCCc
Confidence            45556665      59999888877764         2477899999776543    33345 778999977  7753

>4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter}

Probab=95.33  E-value=0.028  Score=43.07  Aligned_cols=68  Identities=7%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del~~l  101 (174)
                      +.||+.+       .+.+.+|+-+|+.+||+|+.+.|..  .+....++.++.- ..++|.|.++ |..|.....+.+.
T Consensus         4 ~kLY~~p-------~s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~~~~l~~nP-~g~vP~L~~d~g~~l~ES~aI~~Y   74 (215)
T 4gf0_A            4 LTLYFTP-------GTISVAVAIAIEEAALPYQPVRVDFATAEQTKPDYLAINP-KGRVPALRLEDDTILTETGALLDY   74 (215)
T ss_dssp             EEEEECT-------TSTHHHHHHHHHHTTCCEEEEECCGGGTGGGSHHHHTTCT-TCCSCEEECTTSCEEECHHHHHHH
T ss_pred             EEEEeCC-------CCcHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHhCC-CCCcceEEecCCcEEechHHHHHH
Confidence            6799875       2467899999999999999888753  2334456666554 6689999986 6667655544443

>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A*

Probab=95.29  E-value=0.033  Score=43.52  Aligned_cols=71  Identities=11%  Similarity=-0.084  Sum_probs=48.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh--cC-CCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS--LS-GRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~--~g-~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +++||..+      .+++|.+++.+|+..||+|+.+.|.... ..+++...  .+ ....+|.|..+|..|.....|.+.
T Consensus         1 ~~~L~y~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~Y   73 (234)
T 1dug_A            1 SPILGYWK------IKGLVQPTRLLLEYLEEKYEEHLYERDE-GDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (234)
T ss_dssp             CCEEEEES------SSGGGHHHHHHHHHHTCCCEEEEECTTC-HHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             CcEEEEcC------CCCchHHHHHHHHHcCCCceEEEeCCCc-hhhHhhhccccCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            35677776      5799999999999999999998886421 01122221  22 256899998778777766655544


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        74 L   74 (234)
T 1dug_A           74 I   74 (234)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=95.14  E-value=0.28  Score=34.97  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=37.6

Q ss_pred             CChhHHHHHHHHHh-------CCCcEEEEECCCCHHH---------------------HHHHHHhcCCCCCCcEEEE---
Q 047313           39 TFEDCRTIRFLLQS-------FKVTFYERDVSLHMEF---------------------RDELWSSLSGRVIPPRLFI---   87 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~---------------------~~el~~~~g~~~~~P~vFI---   87 (174)
                      .|+.|......|..       .++.+..+++..+.+.                     ..++.+.+| ...+|.+||   
T Consensus        40 ~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-v~~~P~~~lid~  118 (152)
T 2lrn_A           40 GCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYC-IVGFPHIILVDP  118 (152)
T ss_dssp             TCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTT-CCSSCEEEEECT
T ss_pred             CChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhC-CCcCCeEEEECC
Confidence            59999886665543       3477777887755432                     244555666 778999764   


Q ss_pred             CCEEEecc
Q 047313           88 KGRYIGGA   95 (174)
Q Consensus        88 ~G~~IGG~   95 (174)
                      +|+.+..+
T Consensus       119 ~G~i~~~~  126 (152)
T 2lrn_A          119 EGKIVAKE  126 (152)
T ss_dssp             TSEEEEEC
T ss_pred             CCeEEEee
Confidence            68877664

>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A*

Probab=94.91  E-value=0.016  Score=45.13  Aligned_cols=68  Identities=12%  Similarity=0.147  Sum_probs=48.7

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~---~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      ++||..+      . +.|.+++.+|..+||+|+.+.|....   ....++.++.. ..++|.|.+ ||..|.....+.+.
T Consensus         3 ~~Ly~~~------~-s~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~dg~~l~eS~aI~~Y   74 (227)
T 3uar_A            3 MKLYYFP------G-ACSLAPHIVLREAGLDFELENVDLGTKKTGSGADFLQVNP-KGYVPALQLDDGQVLTEDQVILQY   74 (227)
T ss_dssp             EEEEECT------T-STTHHHHHHHHHHTCCEEEEEEETTTTEETTCCBHHHHCT-TCCSCEEECTTCCEEECHHHHHHH
T ss_pred             EEEecCC------C-cchHHHHHHHHHcCCCceEEEeccCcCcccCCHHHHHhCC-CCCCCeEEECCCCEEecHHHHHHH
Confidence            6889875      2 35999999999999999888775432   11235556654 679999998 57677766665544

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=94.88  E-value=0.2  Score=35.60  Aligned_cols=54  Identities=15%  Similarity=0.155  Sum_probs=35.4

Q ss_pred             CChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHH------------------HHHHhcCCCCCCcEEE-E--CCE
Q 047313           39 TFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRD------------------ELWSSLSGRVIPPRLF-I--KGR   90 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~------------------el~~~~g~~~~~P~vF-I--~G~   90 (174)
                      .|+.|......|..       .++.+..+++..+++...                  ++.+.++ ...+|.+| |  +|+
T Consensus        37 ~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~~~P~~~lid~~G~  115 (151)
T 2f9s_A           37 WCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYD-VSPLPTTFLINPEGK  115 (151)
T ss_dssp             TCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTT-CCSSCEEEEECTTSE
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcC-CCCCCeEEEECCCCc
Confidence            69999877666643       368888888866543322                  3344445 67899965 4  677


Q ss_pred             EEe
Q 047313           91 YIG   93 (174)
Q Consensus        91 ~IG   93 (174)
                      .+.
T Consensus       116 i~~  118 (151)
T 2f9s_A          116 VVK  118 (151)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=93.89  E-value=0.0046  Score=41.22  Aligned_cols=59  Identities=15%  Similarity=0.246  Sum_probs=38.8

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-++.|+++      .|++|..+...|+..      ++.+..+|+..+++    +.+..+ ...+|.+++  +|+.+.
T Consensus        21 ~~~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~-v~~~Pt~~~~~~g~~~~   87 (106)
T 2yj7_A           21 PVLVDFWAP------WCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN----TAAQYG-IRSIPTLLLFKNGQVVD   87 (106)
Confidence            345556665      599999998887653      35566666655444    334445 677999977  777553

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=94.83  E-value=0.09  Score=36.74  Aligned_cols=54  Identities=9%  Similarity=-0.001  Sum_probs=39.1

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      ..-+|.|+++      .|+.|+.+...|+..           .+.+..+|+..+++    +.+..+ ...+|.+++
T Consensus        34 ~~vlv~F~a~------wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~   98 (127)
T 3h79_A           34 KDVFVLYYVP------WSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPD----VIERMR-VSGFPTMRY   98 (127)
T ss_dssp             CEEEEEEECT------TCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHH----HHHHTT-CCSSSEEEE
T ss_pred             CCEEEEEECC------ccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHh----HHHhcC-CccCCEEEE
Confidence            3456666666      499999999888763           36788999987765    444455 788998854

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=94.77  E-value=0.14  Score=38.00  Aligned_cols=37  Identities=16%  Similarity=0.324  Sum_probs=28.4

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCC-CcEEEEEC
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFK-VTFYERDV   62 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~-v~~~e~Dv   62 (174)
                      +.++..|++|+-.      .||+|.++...|+.++ |++..+++
T Consensus        12 ~~a~~~vv~f~D~------~Cp~C~~~~~~l~~l~~v~v~~~~~   49 (147)
T 3gv1_A           12 GNGKLKVAVFSDP------DCPFCKRLEHEFEKMTDVTVYSFMM   49 (147)
T ss_dssp             TTCCEEEEEEECT------TCHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred             CCCCEEEEEEECC------CChhHHHHHHHHhhcCceEEEEEEc
Confidence            4455678888876      7999999999998764 56666665

>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium}

Probab=94.73  E-value=0.089  Score=44.65  Aligned_cols=77  Identities=9%  Similarity=0.051  Sum_probs=52.0

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc----EEEEECCCC-----------------------HHHHHHH
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT----FYERDVSLH-----------------------MEFRDEL   72 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~----~~e~Dv~~~-----------------------~~~~~el   72 (174)
                      |..+++..||.+.      .||+|++++.+|..+|+.    +..++..++                       +...+++
T Consensus        72 ~~e~gry~Ly~s~------~CP~a~Rv~i~l~lKGL~~~I~v~~v~~~~~~~gW~f~~~~~~~g~~~d~~~~~e~~~~~y  145 (352)
T 3ppu_A           72 TPEKGRYHLYVSY------ACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLY  145 (352)
T ss_dssp             CCCTTSEEEEECS------SCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCTTTSCCTTCCCCTTTCCSBHHHHH
T ss_pred             CCCCCcEEEEEeC------CCchHHHHHHHHHHcCCCceeEEEEecCCCCCCCceeccccccCCCCcCcccccccchHHH
Confidence            5677899999987      799999999999999985    444443210                       1234555


Q ss_pred             HHhcC---CCCCCcEEEE---CCEEEeccchhhhhh
Q 047313           73 WSSLS---GRVIPPRLFI---KGRYIGGADEVVGLH  102 (174)
Q Consensus        73 ~~~~g---~~~~~P~vFI---~G~~IGG~del~~l~  102 (174)
                      .++.-   +..+||.|..   ++..+.....|.++.
T Consensus       146 ~~~nP~g~gr~kVPvL~d~~~g~~vl~ES~aI~~YL  181 (352)
T 3ppu_A          146 LKVKPDYDGRFTVPVLWDKHTGTIVNNESSEIIRMF  181 (352)
T ss_dssp             HHHCTTCCSCCCSCEEEETTTTEEEECCHHHHHHHH
T ss_pred             HHhCCCCCCCeeeeEEEEeCCCCEEEecHHHHHHHH
Confidence            55542   2449999998   445666655555544

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=94.67  E-value=0.16  Score=38.87  Aligned_cols=55  Identities=15%  Similarity=0.124  Sum_probs=40.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHh----------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQS----------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRY   91 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~----------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~   91 (174)
                      ++.|+++      .|++|.++...|+.          .++.+..+|+..+++    +.+.++ ...+|.+++  +|+.
T Consensus       138 ~v~F~a~------wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~G~~  204 (226)
T 1a8l_A          138 ILVFVTP------TCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQYN-VMAVPKIVIQVNGED  204 (226)
T ss_dssp             EEEEECS------SCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHTT-CCSSCEEEEEETTEE
T ss_pred             EEEEeCC------CCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHH----HHHhCC-CcccCeEEEEeCCce
Confidence            6677777      49999998888765          268889999987665    344456 778999876  5543

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=94.63  E-value=0.018  Score=46.77  Aligned_cols=55  Identities=20%  Similarity=0.536  Sum_probs=34.8

Q ss_pred             CCCCCCCCCcc-----eEeCCCCCCCeeeeecCCCCC-CccccccCcccccCc-----cccCCCCC
Q 047313          120 DCSCNGCGNIR-----FVLCSNCSGSCKVFRDGDDDD-DDELHIRCPECNENG-----LVKCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r-----~v~C~~C~Gs~k~~~~~~~~~-~~~~~~rC~~CnenG-----l~~C~~C~  174 (174)
                      ...|..|.|.+     ...|+.|+|+..++......- .......|+.|+-.|     -.+|+.|.
T Consensus        38 ~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~  103 (248)
T 1nlt_A           38 QILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCN  103 (248)
T ss_dssp             EEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSST
T ss_pred             EEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEeccCCCCcccC
Confidence            34688888877     467999999876653221100 001356788888888     55688873

>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}

Probab=94.58  E-value=0.036  Score=43.87  Aligned_cols=71  Identities=14%  Similarity=0.194  Sum_probs=51.3

Q ss_pred             cEEEEEee-cCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--hcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTS-LRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS--SLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYtts-l~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~--~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .++||..+ .      .+.+.+++.+|...||+|+.+.|..+.....++.+  ...-. .+|.|..||..|.....+.+.
T Consensus        21 ~~~L~y~~g~------~~~a~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~k~~nP~-kVPvL~d~g~~l~ES~AI~~Y   93 (252)
T 3h1n_A           21 AYDLWYWDGI------PGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPF-APPYLVADGMTIAQTANILLF   93 (252)
T ss_dssp             CEEEECCSSS------CTTHHHHHHHHHHHTCCEEEGGGSTTCCHHHHHTSCCSSCCS-SSCEEEETTEEEESHHHHHHH
T ss_pred             ceEEEeCCCC------CcchHHHHHHHHhCCCCceEEeecCchhhHHHHhhccCCCCC-CCCEEEECCEEeecHHHHHHH
Confidence            48888875 3      58999999999999999999988743222344432  22325 999999999888776555544


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        94 L   94 (252)
T 3h1n_A           94 L   94 (252)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*

Probab=94.56  E-value=0.016  Score=43.73  Aligned_cols=70  Identities=13%  Similarity=0.117  Sum_probs=49.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH---HHHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME---FRDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~---~~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l  101 (174)
                      ++||+.+      .++ +.+++.+|..+||+|+.+.|.....   ...++.+... ..++|.+. -+|..|.....+.+.
T Consensus         1 ~~Ly~~~------~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P-~g~vP~L~~~~g~~l~eS~aI~~y   72 (201)
T 2pvq_A            1 MKLYYKV------GAA-SLAPHIILSEAGLPYELEAVDLKAKKTADGGDYFAVNP-RGAVPALEVKPGTVITQNAAILQY   72 (201)
T ss_dssp             CEEEECT------TST-THHHHHHHHHHTCCCEEEECBTTTTBCTTSCBGGGTCT-TCCSCEEEEETTEEEESHHHHHHH
T ss_pred             CeeeeCC------Ccc-HHHHHHHHHhcCCCceEEEecccccCCCCCHHHHhhCc-CCCCCEEEeCCCCEEehHHHHHHH
Confidence            3688876      455 9999999999999999988864321   1234445544 67899998 588888776666554


Q ss_pred             hh
Q 047313          102 HE  103 (174)
Q Consensus       102 ~e  103 (174)
                      .+
T Consensus        73 L~   74 (201)
T 2pvq_A           73 IG   74 (201)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=94.56  E-value=0.039  Score=38.55  Aligned_cols=60  Identities=13%  Similarity=0.093  Sum_probs=36.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHH---Hh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE---CCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLL---QS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI---KGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL---~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI---~G~~I   92 (174)
                      -+|.|+++      .|+.|......|   +.      .++.+..+|+..+.  ..++.+.++ ...+|.+++   +|+.+
T Consensus        30 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~--~~~~~~~~~-v~~~Pt~~~~d~~G~~~  100 (130)
T 2kuc_A           30 LFVDCFTT------WCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGE--GVELRKKYG-VHAYPTLLFINSSGEVV  100 (130)
T ss_dssp             EEEEECCT------TCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTT--HHHHHHHTT-CCSSCEEEEECTTSCEE
T ss_pred             EEEEEECC------CCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcc--hHHHHHHcC-CCCCCEEEEECCCCcEE
Confidence            44555554      599999887766   21      23445566664321  234556666 788999975   67655


Q ss_pred             e
Q 047313           93 G   93 (174)
Q Consensus        93 G   93 (174)
                      .
T Consensus       101 ~  101 (130)
T 2kuc_A          101 Y  101 (130)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A*

Probab=94.50  E-value=0.013  Score=44.36  Aligned_cols=69  Identities=13%  Similarity=0.140  Sum_probs=47.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~---~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      ++||+.+      .++ |.+++.+|..+||+|+.+.|....   ....++.+... ..++|.|.+ ||..|.....+.+.
T Consensus         1 ~~Ly~~~------~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~~g~~l~eS~aI~~y   72 (201)
T 1n2a_A            1 MKLFYKP------GAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNP-KGQVPALLLDDGTLLTEGVAIMQY   72 (201)
T ss_dssp             CEEEECT------TST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCT-TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CeeecCC------Ccc-hHHHHHHHHHcCCCCeeEEEeCCCccccCCHHHHhhCc-CCCCCeEEecCCcEEecHHHHHHH
Confidence            3678875      444 899999999999999887765321   11234555544 679999986 67777766555544


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        73 L   73 (201)
T 1n2a_A           73 L   73 (201)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=94.41  E-value=0.05  Score=42.85  Aligned_cols=73  Identities=16%  Similarity=0.171  Sum_probs=47.2

Q ss_pred             CChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEeccchhhhhhh----cCch
Q 047313           39 TFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGGADEVVGLHE----QGKL  107 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG~del~~l~e----~G~L  107 (174)
                      .|+.|..+...|+.     ..|.|..+|+.     ..++.+.++ ...+|.|+  .+|+.++-+..+..+..    ..+|
T Consensus       131 wC~~C~~l~p~l~~la~~~~~v~f~~vd~~-----~~~l~~~~~-i~~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~L  204 (217)
T 2trc_P          131 GVRGCDALNSSLECLAAEYPMVKFCKIRAS-----NTGAGDRFS-SDVLPTLLVYKGGELISNFISVAEQFAEDFFAADV  204 (217)
T ss_dssp             TSTTHHHHHHHHHHHHTTCTTSEEEEEEHH-----HHTCSTTSC-GGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCeEEEEEECC-----cHHHHHHCC-CCCCCEEEEEECCEEEEEEeCCcccCcccCCHHHH
Confidence            59999999999876     35778888884     123444445 67889764  48987765444333210    1357


Q ss_pred             hHHhhcCCCC
Q 047313          108 KKLLEGIPRN  117 (174)
Q Consensus       108 ~~~L~~~~~~  117 (174)
                      ..+|...+..
T Consensus       205 e~~L~~~g~l  214 (217)
T 2trc_P          205 ESFLNEYGLL  214 (217)
T ss_dssp             HHHHHTTTCS
T ss_pred             HHHHHHcCCC
Confidence            7888776553

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=94.37  E-value=0.095  Score=38.34  Aligned_cols=57  Identities=16%  Similarity=0.198  Sum_probs=39.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----K-VTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~I   92 (174)
                      -||.|+++      -|+.|..+...|+..     + +.+..+|+..++++    .+.++ -..+|.++  -+|+.+
T Consensus        26 vlv~F~a~------WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~l----~~~~~-v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           26 LVLRFGRD------EDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAVY----TQYFD-ISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             EEEEEECT------TSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCHH----HHHTT-CCSSSEEEEEETTEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHHH----HHHcC-CCccCeEEEEECCeEE
Confidence            34445555      499999999888752     2 67888898776654    44445 67888874  478776

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.33  E-value=0.02  Score=40.25  Aligned_cols=52  Identities=10%  Similarity=0.110  Sum_probs=35.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh--------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS--------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~--------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      -+|.|+++      .|++|..+...|+.        ..+.+..+|+..++.    +.+.++ ...+|.+++
T Consensus        28 vlv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~   87 (133)
T 2dj3_A           28 VLIEFYAP------WCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDI----TNDQYK-VEGFPTIYF   87 (133)
T ss_dssp             EEEEECCT------TCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCC----CCSSCC-CSSSSEEEE
T ss_pred             EEEEEECC------CChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHH----HHhhcC-CCcCCEEEE
Confidence            34445554      59999999888865        247788888865532    223345 778999865

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=94.23  E-value=0.021  Score=40.44  Aligned_cols=47  Identities=17%  Similarity=0.251  Sum_probs=34.0

Q ss_pred             hHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           42 DCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        42 ~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .|..+...|+..      .+.+..+|+..+++    +.+.++ ...+|.+++  +|+.+.
T Consensus        49 ~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~----l~~~~~-v~~~Pt~~~~~~G~~~~  103 (123)
T 1oaz_A           49 PCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYG-IRGIPTLLLFKNGEVAA  103 (123)
T ss_dssp             CCCTTHHHHTTC-------CEEEEEETTSCTT----TGGGGT-CCBSSEEEEEESSSEEE
T ss_pred             CcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcC-CCccCEEEEEECCEEEE
Confidence            999888888653      47788899977654    444556 778999976  887643

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=94.22  E-value=0.084  Score=40.99  Aligned_cols=59  Identities=14%  Similarity=0.193  Sum_probs=41.6

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-||.|+++      .|+.|..+...|+.    +  .+.+..+|+..++.+    .+.++ ...+|.+++  +|+.+.
T Consensus        32 ~vvv~F~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~-v~~~Pt~~~~~~G~~~~   98 (222)
T 3dxb_A           32 AILVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYG-IRGIPTLLLFKNGEVAA   98 (222)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTT----GGGGT-CCSBSEEEEEETTEEEE
T ss_pred             EEEEEEECC------cCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHH----HHHcC-CCcCCEEEEEECCeEEE
Confidence            345556665      49999998887764    2  378889999776553    34455 788999876  887553

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=94.22  E-value=0.21  Score=38.13  Aligned_cols=55  Identities=22%  Similarity=0.250  Sum_probs=39.5

Q ss_pred             EEEEEee-cCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CC
Q 047313           26 VIFYTTS-LRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KG   89 (174)
Q Consensus        26 VvlYtts-l~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G   89 (174)
                      |++|+.+ |      |++|..++.+|+.     .+|.|..+|+.. ++. .++.+.+| -..+|.+.+  +|
T Consensus        26 lv~f~~~~~------C~~C~~~~~~~~~la~~~~~v~~~~vd~~~-~~~-~~~~~~~~-v~~~Pt~~~~~~g   88 (226)
T 1a8l_A           26 LIVFVRKDH------CQYCDQLKQLVQELSELTDKLSYEIVDFDT-PEG-KELAKRYR-IDRAPATTITQDG   88 (226)
T ss_dssp             EEEEECSSS------CTTHHHHHHHHHHHHTTCTTEEEEEEETTS-HHH-HHHHHHTT-CCSSSEEEEEETT
T ss_pred             EEEEecCCC------CchhHHHHHHHHHHHhhCCceEEEEEeCCC-ccc-HHHHHHcC-CCcCceEEEEcCC
Confidence            4556554 4      9999999999987     457889999864 222 34555566 779999977  65

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=93.20  E-value=0.0086  Score=42.11  Aligned_cols=58  Identities=10%  Similarity=0.246  Sum_probs=34.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHH---Hh----CC--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE----CCEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLL---QS----FK--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI----KGRY   91 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL---~~----~~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI----~G~~   91 (174)
                      -+|.|+++      .|++|..+...|   +.    ++  +.+..+|+.  .....++.+.++ ...+|.+++    +|+.
T Consensus        22 vlv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~--~~~~~~~~~~~~-v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           22 VMVYFHSE------HCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVD--TPEGQELARRYR-VPGTPTFVFLVPKAGAW   92 (130)
Confidence            34556665      599999987666   22    22  445555553  222344555556 778999866    4665

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=94.08  E-value=0.52  Score=33.32  Aligned_cols=62  Identities=11%  Similarity=0.066  Sum_probs=39.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC----CCcEEEEECCCCHHHHHHH-------------------HHhcCCCCC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF----KVTFYERDVSLHMEFRDEL-------------------WSSLSGRVI   81 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~----~v~~~e~Dv~~~~~~~~el-------------------~~~~g~~~~   81 (174)
                      .|+.|+.+      .|+.|......|+..    ++.+..+++..+++...++                   .+.++ ...
T Consensus        45 ~ll~f~~~------~C~~C~~~~~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~~  117 (156)
T 1kng_A           45 SLVNVWAS------WCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWG-VYG  117 (156)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTT-CCS
T ss_pred             EEEEEEcc------cCHhHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcC-cCc
Confidence            45555554      599999888888764    3888888886665443332                   23344 678


Q ss_pred             Cc-EEEE--CCEEEe
Q 047313           82 PP-RLFI--KGRYIG   93 (174)
Q Consensus        82 ~P-~vFI--~G~~IG   93 (174)
                      +| .++|  +|+.+.
T Consensus       118 ~P~~~~id~~G~i~~  132 (156)
T 1kng_A          118 VPETFVVGREGTIVY  132 (156)
T ss_dssp             SCEEEEECTTSBEEE
T ss_pred             cCeEEEEcCCCCEEE
Confidence            99 4566  666543

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.02  E-value=0.028  Score=40.41  Aligned_cols=93  Identities=14%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             hhhHhhCCCCCC-CcEEEEEeecCCCCCCChhHHHHHHHHHh----C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE
Q 047313           12 KGYEEKCPPGGE-DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL   85 (174)
Q Consensus        12 ~~~~~~~~~~~~-~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v   85 (174)
                      ..|.+.-...+. ..|+||..+     +.|+.|..+...|+.    + ++.|..+|+....       +.++ ...+|.+
T Consensus        18 ~~~~~~v~~~~~~~~vvv~f~a-----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~-------~~~~-i~~~Pt~   84 (135)
T 2dbc_A           18 NQYVNEVTNAEKDLWVVIHLYR-----SSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI-------EHYH-DNCLPTI   84 (135)
T ss_dssp             HHHHHHTTTCCSSCEEEEEECC-----TTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC-------SSCC-SSCCSEE
T ss_pred             HHHHHHHHhcCCCCEEEEEEEC-----CCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc-------ccCC-CCCCCEE
Confidence            345554422222 345554443     259999999888865    2 4667788886553       3445 7789997


Q ss_pred             EE--CCEEEeccchhhhhh----hcCchhHHhhcCCCC
Q 047313           86 FI--KGRYIGGADEVVGLH----EQGKLKKLLEGIPRN  117 (174)
Q Consensus        86 FI--~G~~IGG~del~~l~----e~G~L~~~L~~~~~~  117 (174)
                      ++  +|+.+.-+.....+.    ...+|.++|...+..
T Consensus        85 ~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~~i  122 (135)
T 2dbc_A           85 FVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAI  122 (135)
T ss_dssp             EEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHTSS
T ss_pred             EEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcCCc
Confidence            54  675432222111111    123567777665443

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=94.00  E-value=0.052  Score=41.51  Aligned_cols=56  Identities=18%  Similarity=0.253  Sum_probs=42.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYI   92 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~I   92 (174)
                      ||-|+.+|      |+.|+.+.-+|++    +  .+.|..+||...+++    .+.++ -..+|++  |.+|+.+
T Consensus        45 VVdF~A~W------CgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~----a~~y~-V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           45 CIRFGHDY------DPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDF----NTMYE-LYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             EEEEECTT------SHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTT----TTTTT-CCSSEEEEEEETTEEE
T ss_pred             EEEEECCC------ChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH----HHHcC-CCCCCEEEEEECCEEE
Confidence            44466665      9999999888865    2  377999999877664    44445 7789998  7799997

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=93.98  E-value=0.3  Score=34.16  Aligned_cols=56  Identities=11%  Similarity=0.078  Sum_probs=36.5

Q ss_pred             CChhHHHH----------HHHHHhCCCcEEEEECCCCHHHHHHHHH--------------------hcCCCCCCcEEEE-
Q 047313           39 TFEDCRTI----------RFLLQSFKVTFYERDVSLHMEFRDELWS--------------------SLSGRVIPPRLFI-   87 (174)
Q Consensus        39 ~c~~C~~v----------r~iL~~~~v~~~e~Dv~~~~~~~~el~~--------------------~~g~~~~~P~vFI-   87 (174)
                      .|+.|...          ...+...++.+..+++..+++...++.+                    .++ ...+|.+|+ 
T Consensus        38 ~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-v~~~P~~~li  116 (142)
T 3ewl_A           38 DCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQLYD-IRATPTIYLL  116 (142)
T ss_dssp             SCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTCSC-CCSSSEEEEE
T ss_pred             CCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHHcC-CCCCCeEEEE
Confidence            59999885          3334456788888888776655444432                    334 667898764 


Q ss_pred             --CCEEEecc
Q 047313           88 --KGRYIGGA   95 (174)
Q Consensus        88 --~G~~IGG~   95 (174)
                        +|+.+.+.
T Consensus       117 d~~G~i~~~~  126 (142)
T 3ewl_A          117 DGRKRVILKD  126 (142)
T ss_dssp             CTTCBEEECS
T ss_pred             CCCCCEEecC
Confidence              57777643

>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*

Probab=93.94  E-value=0.019  Score=43.49  Aligned_cols=70  Identities=13%  Similarity=0.111  Sum_probs=47.4

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH--H-HHHHHHhcCCCCCCcEEE-ECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME--F-RDELWSSLSGRVIPPRLF-IKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~--~-~~el~~~~g~~~~~P~vF-I~G~~IGG~del~~l  101 (174)
                      ++||+.+      .++ |.+++.+|..+|++|+.+.|.....  . ..++.+... ..++|.+. .+|..|.....+.+.
T Consensus         1 ~~Ly~~~------~s~-~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~~g~~l~eS~aI~~y   72 (203)
T 1pmt_A            1 MKLYYTP------GSC-SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINP-KGQVPVLQLDNGDILTEGVAIVQY   72 (203)
T ss_dssp             CEEEECT------TST-THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCT-TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CeeeccC------Ccc-hHHHHHHHHHcCCCceEEEeccccccccCCHHHHhcCC-CCCCCeEEecCCcEEeeHHHHHHH
Confidence            3688876      344 8999999999999998877653211  1 234445544 67899998 577777766655554


Q ss_pred             hh
Q 047313          102 HE  103 (174)
Q Consensus       102 ~e  103 (174)
                      .+
T Consensus        73 L~   74 (203)
T 1pmt_A           73 LA   74 (203)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=93.93  E-value=0.15  Score=36.36  Aligned_cols=80  Identities=13%  Similarity=0.066  Sum_probs=52.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~de   97 (174)
                      .|+|+...     +.|+.|+.+..+|+.     .++.|..+|+...       .+.++ -..+|.+  |-+|+.+....-
T Consensus        25 ~vvv~F~a-----~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~-v~~~PT~~~fk~G~~v~~~~G   91 (118)
T 3evi_A           25 WVIIHLYR-----SSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC-------IQHYH-DNCLPTIFVYKNGQIEAKFIG   91 (118)
T ss_dssp             EEEEEEEC-----TTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCC-GGGCSEEEEEETTEEEEEEES
T ss_pred             eEEEEEeC-----CCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCC-CCCCCEEEEEECCEEEEEEeC
Confidence            45554443     259999999998876     2578999998643       23445 7789998  459987665544


Q ss_pred             hhhhh----hcCchhHHhhcCCCC
Q 047313           98 VVGLH----EQGKLKKLLEGIPRN  117 (174)
Q Consensus        98 l~~l~----e~G~L~~~L~~~~~~  117 (174)
                      +..+-    ...+|+.+|...+..
T Consensus        92 ~~~~gg~~~~~~~le~~L~~~g~i  115 (118)
T 3evi_A           92 IIECGGINLKLEELEWKLAEVGAI  115 (118)
T ss_dssp             TTTTTCSSCCHHHHHHHHHTTTSC
T ss_pred             hhhhCCCCCCHHHHHHHHHHcCCc
Confidence            43321    234677777766554

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=93.82  E-value=0.15  Score=36.41  Aligned_cols=47  Identities=11%  Similarity=0.070  Sum_probs=36.3

Q ss_pred             HHHHHHHHhCCCcEEEEECCCCHH-------HHHHHHHhcCCCCCCcEEEECCEEE
Q 047313           44 RTIRFLLQSFKVTFYERDVSLHME-------FRDELWSSLSGRVIPPRLFIKGRYI   92 (174)
Q Consensus        44 ~~vr~iL~~~~v~~~e~Dv~~~~~-------~~~el~~~~g~~~~~P~vFI~G~~I   92 (174)
                      ..+...|+++|+.++..+++.++.       ..+.| +..| ...+|.++|||+.+
T Consensus        33 ~~~~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L-~~~G-~~~LP~~~VDGevv   86 (106)
T 3ktb_A           33 AVVIESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFL-QKHG-ADALPITLVDGEIA   86 (106)
T ss_dssp             HHHHHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHH-HTTC-GGGCSEEEETTEEE
T ss_pred             HHHHHHHHHCCCEEEEEccccChHHHhcCHHHHHHH-HHcC-cccCCEEEECCEEE
Confidence            455778889999999999998865       23333 3345 78899999999976

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=93.81  E-value=0.3  Score=36.75  Aligned_cols=35  Identities=14%  Similarity=0.256  Sum_probs=25.2

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECC
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVS   63 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~   63 (174)
                      +-.|++|+..      .||+|.++...|+.    +  +|.|..+++.
T Consensus        26 ~~~vv~f~d~------~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           26 KIEVLEFFAY------TCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             CEEEEEEECT------TCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CeEEEEEECC------CCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            3367778776      69999987777654    3  4667778875

>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A*

Probab=93.71  E-value=0.015  Score=43.98  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=46.4

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH---HHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM---EFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~---~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      ++||+.+      .++ +.+++.+|..+||+|+.+.|....   ....++.+... ..++|.|.+ +|..|.....+.+.
T Consensus         1 ~~Ly~~~------~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P-~g~vP~L~~~~g~~l~eS~aI~~y   72 (203)
T 2dsa_A            1 MKLYYSP------GAC-SLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNP-AGYVPCLQLDDGRTLTEGPAIVQY   72 (203)
T ss_dssp             CEEEECT------TST-THHHHHHHHHHTCCCEEEEEETTTTEETTCCBGGGTCT-TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CeeeecC------Ccc-hHHHHHHHHHcCCCCeEEEEeCCCCcccCCHHHHHhCC-CCCCCEEEecCCcEEecHHHHHHH
Confidence            3688865      344 899999999999999887775321   11234445443 678999987 67777766555544

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=93.70  E-value=0.17  Score=36.62  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=18.4

Q ss_pred             CChhHHHHHHHHHh----C-CCcEEEEECC
Q 047313           39 TFEDCRTIRFLLQS----F-KVTFYERDVS   63 (174)
Q Consensus        39 ~c~~C~~vr~iL~~----~-~v~~~e~Dv~   63 (174)
                      .|+.|......|..    + ++.+..+++.
T Consensus        48 ~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d   77 (165)
T 3ha9_A           48 WCPSCVYMADLLDRLTEKYREISVIAIDFW   77 (165)
T ss_dssp             TCTTHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CCcchhhhHHHHHHHHHHcCCcEEEEEEec
Confidence            69999887766654    3 6677777776

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=93.69  E-value=0.0048  Score=43.19  Aligned_cols=59  Identities=22%  Similarity=0.287  Sum_probs=40.5

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C-CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-|+.|+++      .|++|..+...|+.    + ++.|..+|+..+.++.+    .++ ...+|.+++  +|+.+.
T Consensus        38 ~~vv~f~~~------~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~----~~~-v~~~Pt~~~~~~g~~~~  103 (130)
T 1wmj_A           38 VVIIDFTAS------WCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAE----KYN-VEAMPTFLFIKDGAEAD  103 (130)
T ss_dssp             BCBEECCSS------SCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHH----HHT-CCSSCCCCBCTTTTCCB
T ss_pred             EEEEEEECC------CChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHH----HcC-CCccceEEEEeCCeEEE
Confidence            345556655      59999887777764    2 68888888877655433    345 678998877  776543

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=93.66  E-value=0.13  Score=37.25  Aligned_cols=58  Identities=17%  Similarity=0.160  Sum_probs=40.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IG   93 (174)
                      -+|.|+++      .|+.|......|+.    +  .+.+..+|+..+++    +.+.++ ...+|.+  |.+|+.+.
T Consensus        26 vlv~F~a~------wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~-i~~~Pt~~~~~~G~~v~   91 (142)
T 1qgv_A           26 VVIRFGHD------WDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMYE-LYDPCTVMFFFRNKHIM   91 (142)
T ss_dssp             EEEEEECT------TSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSSC-SCSSCEEEEEETTEEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHH----HHHHcC-CCCCCEEEEEECCcEEE
Confidence            34455555      49999998887765    2  47788999976654    344455 7789998  45887764

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=93.62  E-value=0.096  Score=35.89  Aligned_cols=51  Identities=12%  Similarity=0.157  Sum_probs=36.4

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      ..-+|.|+++      .|+.|..+...|+..           .+.+..+|+..++     +.+  + ...+|.+++
T Consensus        26 ~~vlv~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~--~-v~~~Pt~~~   87 (121)
T 2djj_A           26 KDVLIEFYAP------WCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-----VPD--E-IQGFPTIKL   87 (121)
T ss_dssp             SCEEEEEECS------SCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-----CSS--C-CSSSSEEEE
T ss_pred             CCEEEEEECC------CCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-----ccc--c-cCcCCeEEE
Confidence            3456666666      599999988887652           5789999997654     222  4 788999865

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=93.61  E-value=0.15  Score=36.59  Aligned_cols=50  Identities=14%  Similarity=0.054  Sum_probs=37.7

Q ss_pred             HHHHHHHHhCCCcEEEEECCCCHH-------HHHHHHHhcCCCCCCcEEEECCEEE--ecc
Q 047313           44 RTIRFLLQSFKVTFYERDVSLHME-------FRDELWSSLSGRVIPPRLFIKGRYI--GGA   95 (174)
Q Consensus        44 ~~vr~iL~~~~v~~~e~Dv~~~~~-------~~~el~~~~g~~~~~P~vFI~G~~I--GG~   95 (174)
                      ......|+++|+.++..+++.++.       ..+.|. ..| ...+|.++|||+.+  |.|
T Consensus        30 ~~~~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~-~~G-~~~LP~~~VDGevv~~G~y   88 (110)
T 3kgk_A           30 STDVQWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIE-ASG-AEGLPLLLLDGETVMAGRY   88 (110)
T ss_dssp             HHHHHHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHH-HHC-GGGCCEEEETTEEEEESSC
T ss_pred             HHHHHHHHHCCCeEEEEccccChHHHhcCHHHHHHHH-HcC-cccCCEEEECCEEEEeccC
Confidence            355778888999999999998864       333333 345 78899999999975  544

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=93.48  E-value=0.044  Score=34.33  Aligned_cols=24  Identities=21%  Similarity=0.620  Sum_probs=15.7

Q ss_pred             CCCCCCCcce---EeCCCCCCCeeeee
Q 047313          122 SCNGCGNIRF---VLCSNCSGSCKVFR  145 (174)
Q Consensus       122 ~C~~Cgg~r~---v~C~~C~Gs~k~~~  145 (174)
                      .|..|+|.+.   -+|+.|+|+..+..
T Consensus        11 ~C~~C~GsG~~i~~~C~~C~G~G~v~~   37 (53)
T 3lcz_A           11 TCPNCNGSGREEPEPCPKCLGKGVILT   37 (53)
T ss_dssp             ECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred             cCcCCcccccCCCCcCCCCCCcEEEEE
Confidence            5777777776   46777777765543

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=93.43  E-value=0.34  Score=34.40  Aligned_cols=75  Identities=15%  Similarity=0.053  Sum_probs=44.4

Q ss_pred             CChhHHHHHHHHHh----CCCcEEEEEC--CCCHHH---------------------HHHHHHhcCCCCCCcEE-EE--C
Q 047313           39 TFEDCRTIRFLLQS----FKVTFYERDV--SLHMEF---------------------RDELWSSLSGRVIPPRL-FI--K   88 (174)
Q Consensus        39 ~c~~C~~vr~iL~~----~~v~~~e~Dv--~~~~~~---------------------~~el~~~~g~~~~~P~v-FI--~   88 (174)
                      .|+.|......|..    +++.+..+++  ..+.+.                     ..++.+.++ ...+|.+ +|  +
T Consensus        41 ~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-v~~~P~~~lid~~  119 (154)
T 3ia1_A           41 WCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFK-VLGQPWTFVVDRE  119 (154)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSS-BCSSCEEEEECTT
T ss_pred             cChhHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhC-CCcccEEEEECCC
Confidence            69999887777654    3888888888  333332                     233444455 6789995 45  6


Q ss_pred             CEEEeccchhhhhhhcCchhHHhhcCCCC
Q 047313           89 GRYIGGADEVVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        89 G~~IGG~del~~l~e~G~L~~~L~~~~~~  117 (174)
                      |+.+.-+...   ....+|.++|++....
T Consensus       120 G~i~~~~~g~---~~~~~l~~~l~~~~~~  145 (154)
T 3ia1_A          120 GKVVALFAGR---AGREALLDALLLAGAD  145 (154)
T ss_dssp             SEEEEEEESB---CCHHHHHHHHHHTTCC
T ss_pred             CCEEEEEcCC---CCHHHHHHHHHhccCc
Confidence            7655443321   1223566666655443

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=93.35  E-value=0.11  Score=36.88  Aligned_cols=55  Identities=15%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             CChhHHHHHHHHHh----C---CCcEEEEECCCCHHHHH-------------------HHHHhcCCCCCCcEEEE---CC
Q 047313           39 TFEDCRTIRFLLQS----F---KVTFYERDVSLHMEFRD-------------------ELWSSLSGRVIPPRLFI---KG   89 (174)
Q Consensus        39 ~c~~C~~vr~iL~~----~---~v~~~e~Dv~~~~~~~~-------------------el~~~~g~~~~~P~vFI---~G   89 (174)
                      .|+.|......|+.    +   ++.+..+++..+.+...                   ++.+.++ ...+|.+||   +|
T Consensus        41 ~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~~~P~~~lid~~G  119 (152)
T 2lja_A           41 WCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYL-INGIPRFILLDRDG  119 (152)
T ss_dssp             SCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTT-CCSSCCEEEECTTS
T ss_pred             cCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcC-cCCCCEEEEECCCC
Confidence            69999765554433    3   46777888776653222                   3444555 678898876   67


Q ss_pred             EEEec
Q 047313           90 RYIGG   94 (174)
Q Consensus        90 ~~IGG   94 (174)
                      +.+.-
T Consensus       120 ~i~~~  124 (152)
T 2lja_A          120 KIISA  124 (152)
T ss_dssp             CEEES
T ss_pred             eEEEc
Confidence            77653

>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17

Probab=93.35  E-value=0.64  Score=33.11  Aligned_cols=66  Identities=14%  Similarity=0.298  Sum_probs=43.3

Q ss_pred             CcEEEEEeecCCCCCCChhH------HHHHHHHHh--------CCCcEEEEECCCCHH----HHHHHH-HhcCCCCCCcE
Q 047313           24 DSVIFYTTSLRGIRKTFEDC------RTIRFLLQS--------FKVTFYERDVSLHME----FRDELW-SSLSGRVIPPR   84 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C------~~vr~iL~~--------~~v~~~e~Dv~~~~~----~~~el~-~~~g~~~~~P~   84 (174)
                      -.|+||+...     .|.-|      .....+|+.        +.+.|+.+||...++    +.+++. ++...---.|.
T Consensus         8 v~i~VYGAe~-----iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYPl   82 (111)
T 1xg8_A            8 NAVVVYGADV-----ICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYPL   82 (111)
T ss_dssp             EEEEEEECSS-----CCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSSE
T ss_pred             EEEEEEcccc-----cchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccceE
Confidence            3589999874     67666      455556543        346689999965432    244443 44443556799


Q ss_pred             EEECCEEEec
Q 047313           85 LFIKGRYIGG   94 (174)
Q Consensus        85 vFI~G~~IGG   94 (174)
                      |.|+|++||.
T Consensus        83 V~indeiVaE   92 (111)
T 1xg8_A           83 ITMNDEYVAD   92 (111)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCEEeec
Confidence            9999999974

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=93.35  E-value=0.13  Score=41.49  Aligned_cols=74  Identities=16%  Similarity=0.159  Sum_probs=47.9

Q ss_pred             CChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEeccchhhhhh----hcCch
Q 047313           39 TFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGADEVVGLH----EQGKL  107 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~del~~l~----e~G~L  107 (174)
                      .|+.|..+...|..     .+|.|..+|+..     .++.+.++ ...+|.++|  +|+.++-+..+..+.    ....|
T Consensus       144 wC~~Ck~l~p~l~~La~~~~~v~f~kVd~d~-----~~l~~~~~-I~~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~L  217 (245)
T 1a0r_P          144 GIKGCDALNSSLICLAAEYPMVKFCKIKASN-----TGAGDRFS-SDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDV  217 (245)
T ss_dssp             TSTTHHHHHHHHHHHHHHCTTSEEEEEEHHH-----HCCTTSSC-TTTCSEEEEEETTEEEEEETTGGGGSCTTCCHHHH
T ss_pred             CChHHHHHHHHHHHHHHHCCCCEEEEEeCCc-----HHHHHHCC-CCCCCEEEEEECCEEEEEEeCCcccccccccHHHH
Confidence            59999999888865     257788888732     23444445 678898754  888765444333221    11248


Q ss_pred             hHHhhcCCCCC
Q 047313          108 KKLLEGIPRNL  118 (174)
Q Consensus       108 ~~~L~~~~~~~  118 (174)
                      ..+|...+...
T Consensus       218 e~~L~~~g~l~  228 (245)
T 1a0r_P          218 ESFLNEYGLLP  228 (245)
T ss_dssp             HHHHHTTTCSC
T ss_pred             HHHHHHcCCCC
Confidence            88888877654

>1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5

Probab=93.35  E-value=0.026  Score=42.62  Aligned_cols=68  Identities=10%  Similarity=0.099  Sum_probs=46.5

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH--H-HHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME--F-RDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~--~-~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      ++||+.+       .+.|.+++.+|+.+||+|+.+.+.....  . ..++.+... ..++|.|.+ +|..|.....+.+.
T Consensus         1 ~~Ly~~~-------~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P-~g~vP~L~~~~g~~l~eS~aI~~y   72 (201)
T 1f2e_A            1 MKLFISP-------GACSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNP-SGKVPALTLDSGETLTENPAILLY   72 (201)
T ss_dssp             CEEEECT-------TSTTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCT-TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             CeeeecC-------CccHHHHHHHHHHcCCCceEEEeecCCCCCCCChHHHccCc-CCCCceEEecCCcEeeHHHHHHHH
Confidence            3678854       3679999999999999998877643211  1 134555554 679999984 77777666555544

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=93.32  E-value=0.34  Score=36.33  Aligned_cols=34  Identities=12%  Similarity=0.048  Sum_probs=23.6

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECC
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVS   63 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~   63 (174)
                      -.|+.|+..      .||+|......|..    +  +|.|..+.+.
T Consensus        27 ~~i~~f~d~------~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~~   66 (192)
T 3h93_A           27 IEVVELFWY------GCPHCYAFEPTIVPWSEKLPADVHFVRLPAL   66 (192)
T ss_dssp             EEEEEEECT------TCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             CEEEEEECC------CChhHHHhhHHHHHHHHhCCCCeEEEEEehh
Confidence            367788876      69999998877754    3  3456655553

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=93.31  E-value=0.37  Score=35.91  Aligned_cols=17  Identities=35%  Similarity=0.757  Sum_probs=14.4

Q ss_pred             CCCCcEEEECCEEE-ecc
Q 047313           79 RVIPPRLFIKGRYI-GGA   95 (174)
Q Consensus        79 ~~~~P~vFI~G~~I-GG~   95 (174)
                      ...+|.++|||+++ +|.
T Consensus       153 v~gtPt~ving~~~~~g~  170 (193)
T 2rem_A          153 PVGTPTIVVNGRYMVTGH  170 (193)
T ss_dssp             CSSSSEEEETTTEEECCS
T ss_pred             CCCCCeEEECCEEEecCC
Confidence            67899999999875 775

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=93.27  E-value=0.18  Score=35.31  Aligned_cols=57  Identities=9%  Similarity=0.091  Sum_probs=36.5

Q ss_pred             CChhHHHHHHHHHh----C----CCcEEEEECCCCHHHH---------------------HHHHHhcCCCCCCcEEEE--
Q 047313           39 TFEDCRTIRFLLQS----F----KVTFYERDVSLHMEFR---------------------DELWSSLSGRVIPPRLFI--   87 (174)
Q Consensus        39 ~c~~C~~vr~iL~~----~----~v~~~e~Dv~~~~~~~---------------------~el~~~~g~~~~~P~vFI--   87 (174)
                      .|+.|......|..    +    ++.+..+++..+.+..                     .++.+.+| ...+|.++|  
T Consensus        44 ~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-v~~~P~~~lid  122 (148)
T 3fkf_A           44 WCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAKQYA-ILTLPTNILLS  122 (148)
T ss_dssp             GGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT-CCSSSEEEEEC
T ss_pred             CCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHHhcC-CCCcCEEEEEC
Confidence            59999877666643    3    3667777776655322                     23445555 778999764  


Q ss_pred             -CCEEEeccc
Q 047313           88 -KGRYIGGAD   96 (174)
Q Consensus        88 -~G~~IGG~d   96 (174)
                       +|+.++...
T Consensus       123 ~~G~i~~~~~  132 (148)
T 3fkf_A          123 PTGKILARDI  132 (148)
T ss_dssp             TTSBEEEESC
T ss_pred             CCCeEEEecC
Confidence             677776554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=93.02  E-value=0.26  Score=39.25  Aligned_cols=59  Identities=10%  Similarity=0.313  Sum_probs=42.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .-||.|+++      .|+.|......|+.    +  .+.|..+|+..+++    +.+.++ ...+|++++  +|+.+.
T Consensus        28 ~v~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~-v~~~Pt~~~~~~G~~~~   94 (287)
T 3qou_A           28 PVLFYFWSE------RSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQM----IAAQFG-LRAIPTVYLFQNGQPVD   94 (287)
T ss_dssp             CEEEEEECT------TCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHH----HHHTTT-CCSSSEEEEEETTEEEE
T ss_pred             eEEEEEECC------CChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHH----HHHHcC-CCCCCeEEEEECCEEEE
Confidence            345556665      49999987777764    2  38899999988764    445556 788999865  887553

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.83  E-value=0.13  Score=36.42  Aligned_cols=56  Identities=14%  Similarity=0.240  Sum_probs=39.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHhcCCCC------CCcEEEE--CCE
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDELWSSLSGRV------IPPRLFI--KGR   90 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el~~~~g~~~------~~P~vFI--~G~   90 (174)
                      +|.|+++      .|+.|+.+...|+.       .++.|..+|+..++++.+    .++ ..      .+|++++  +|+
T Consensus        30 lv~f~a~------wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~----~~~-v~~~~~~~~~Pt~~~~~~G~   98 (137)
T 2dj0_A           30 IVEFFAN------WSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDVST----RYK-VSTSPLTKQLPTLILFQGGK   98 (137)
T ss_dssp             EEEECCT------TCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHHHH----HTT-CCCCSSSSCSSEEEEESSSS
T ss_pred             EEEEECC------CCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHHHH----Hcc-CcccCCcCCCCEEEEEECCE
Confidence            6666665      59999888777754       268888999987766443    344 44      8999864  676


Q ss_pred             EE
Q 047313           91 YI   92 (174)
Q Consensus        91 ~I   92 (174)
                      .+
T Consensus        99 ~~  100 (137)
T 2dj0_A           99 EA  100 (137)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- protein structure initiative; 2.10A {Corynebacterium glutamicum}

Probab=92.73  E-value=0.07  Score=45.61  Aligned_cols=38  Identities=3%  Similarity=-0.046  Sum_probs=31.4

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc-EEEEECC
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT-FYERDVS   63 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~-~~e~Dv~   63 (174)
                      |..++++.||++.      .||++.+|+-+|..+|++ +..+|+.
T Consensus        56 ~~e~gr~~LY~~~------~cP~a~Rv~I~L~lkGL~e~i~vdl~   94 (362)
T 3m1g_A           56 PVEAGRYRLVAAR------ACPWAHRTVITRRLLGLENVISLGLT   94 (362)
T ss_dssp             ECCTTSEEEEECT------TCHHHHHHHHHHHHHTCTTTSEEEEC
T ss_pred             CCCCCeEEEEecC------CCccHHHHHHHHHHhCCCceEEEecc
Confidence            4566899999986      699999999999999987 4456654

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=92.60  E-value=0.26  Score=34.38  Aligned_cols=63  Identities=8%  Similarity=0.170  Sum_probs=38.2

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----CC--CcEEEEECCC-----CHHHHH------------------HHHH
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----FK--VTFYERDVSL-----HMEFRD------------------ELWS   74 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~--v~~~e~Dv~~-----~~~~~~------------------el~~   74 (174)
                      .-|+.|+.+      .|+.|......|+.    ++  +.+..+++..     +++...                  ++.+
T Consensus        31 ~~lv~f~~~------~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  104 (148)
T 2b5x_A           31 PTLIHFWSI------SCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTD  104 (148)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHH
T ss_pred             EEEEEEEcC------CCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHH
Confidence            345555554      69999887776654    22  7788888753     222111                  2333


Q ss_pred             hcCCCCCCcEEEE---CCEEEe
Q 047313           75 SLSGRVIPPRLFI---KGRYIG   93 (174)
Q Consensus        75 ~~g~~~~~P~vFI---~G~~IG   93 (174)
                      .++ ...+|.+||   +|+.+.
T Consensus       105 ~~~-v~~~P~~~lid~~G~i~~  125 (148)
T 2b5x_A          105 AFE-NEYVPAYYVFDKTGQLRH  125 (148)
T ss_dssp             HTC-CCCSSEEEEECTTCBEEE
T ss_pred             HhC-CCCCCEEEEECCCCcEEE
Confidence            445 678999976   776654

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=92.42  E-value=0.58  Score=32.88  Aligned_cols=30  Identities=10%  Similarity=0.027  Sum_probs=21.1

Q ss_pred             CChhHHHHHHHHHh----------CCCcEEEEECCCCHHH
Q 047313           39 TFEDCRTIRFLLQS----------FKVTFYERDVSLHMEF   68 (174)
Q Consensus        39 ~c~~C~~vr~iL~~----------~~v~~~e~Dv~~~~~~   68 (174)
                      .|+.|......|..          .++.+.-+++..+.+.
T Consensus        42 wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~   81 (142)
T 3eur_A           42 GCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDE   81 (142)
T ss_dssp             SSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHH
T ss_pred             CCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHH
Confidence            59999876555544          5677888888766544

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=92.36  E-value=0.52  Score=35.22  Aligned_cols=17  Identities=18%  Similarity=0.303  Sum_probs=14.3

Q ss_pred             CCCCcEEEECCEE-Eecc
Q 047313           79 RVIPPRLFIKGRY-IGGA   95 (174)
Q Consensus        79 ~~~~P~vFI~G~~-IGG~   95 (174)
                      ...+|.+||||++ +.|.
T Consensus       148 v~gtPt~ving~~~~~g~  165 (195)
T 2znm_A          148 IDSTPTVIVGGKYRVIFN  165 (195)
T ss_dssp             CCSSSEEEETTTEEECCC
T ss_pred             CCCCCeEEECCEEEEcCC
Confidence            6789999999996 7664

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=92.34  E-value=0.63  Score=33.20  Aligned_cols=34  Identities=15%  Similarity=0.030  Sum_probs=24.2

Q ss_pred             CChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHH
Q 047313           39 TFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDEL   72 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el   72 (174)
                      .|+.|......|..       .++.+..+++..+++...++
T Consensus        45 ~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~~~   85 (165)
T 3or5_A           45 WCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVKNY   85 (165)
T ss_dssp             TSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH
Confidence            69999987776654       34778888887766655444

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=92.29  E-value=0.64  Score=32.50  Aligned_cols=54  Identities=19%  Similarity=0.143  Sum_probs=35.4

Q ss_pred             CChhHHHHHHHHHh--------CCCcEEEEECCCCHH--------------------HHHHHHHhcCCCCCCcEEEE-C-
Q 047313           39 TFEDCRTIRFLLQS--------FKVTFYERDVSLHME--------------------FRDELWSSLSGRVIPPRLFI-K-   88 (174)
Q Consensus        39 ~c~~C~~vr~iL~~--------~~v~~~e~Dv~~~~~--------------------~~~el~~~~g~~~~~P~vFI-~-   88 (174)
                      .|+.|......|..        .++.+..+++..+.+                    ...++.+.++ ...+|.+|| + 
T Consensus        39 wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~Pt~~lid~  117 (144)
T 1o73_A           39 WCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFG-VESIPTLITINA  117 (144)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHHT-CCSSSEEEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHHcC-CCCCCEEEEEEC
Confidence            59999887776654        256777888766542                    2334555556 778999864 4 


Q ss_pred             --CEEEe
Q 047313           89 --GRYIG   93 (174)
Q Consensus        89 --G~~IG   93 (174)
                        |+.+.
T Consensus       118 ~~G~i~~  124 (144)
T 1o73_A          118 DTGAIIG  124 (144)
T ss_dssp             TTCCEEE
T ss_pred             CCCeEEe
Confidence              66553

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=92.15  E-value=0.55  Score=35.90  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=40.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-------C--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-------K--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-------~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~I   92 (174)
                      -+|.|+++      .|+.|+.....|+..       +  +.+..+|+..+++    +.+.++ ...+|.+++  +|+.+
T Consensus        35 v~v~F~a~------wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~g~~~  102 (241)
T 3idv_A           35 VLLEFYAP------WCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASV----LASRFD-VSGYPTIKILKKGQAV  102 (241)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHH----HHHHTT-CCSSSEEEEEETTEEE
T ss_pred             EEEEEECC------CCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHH----HHHhcC-CCcCCEEEEEcCCCcc
Confidence            35555555      599999988777552       2  8899999987765    444456 778999854  77665

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=92.14  E-value=0.78  Score=32.18  Aligned_cols=54  Identities=15%  Similarity=0.015  Sum_probs=35.2

Q ss_pred             CChhHHHHHHHHHh--------CCCcEEEEECCCCHH--------------------HHHHHHHhcCCCCCCcEEE-EC-
Q 047313           39 TFEDCRTIRFLLQS--------FKVTFYERDVSLHME--------------------FRDELWSSLSGRVIPPRLF-IK-   88 (174)
Q Consensus        39 ~c~~C~~vr~iL~~--------~~v~~~e~Dv~~~~~--------------------~~~el~~~~g~~~~~P~vF-I~-   88 (174)
                      .|+.|......|..        .++.+..+++..+.+                    ...++.+.++ ...+|.+| |+ 
T Consensus        39 wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~~~P~~~lid~  117 (144)
T 1i5g_A           39 WCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFD-VKSIPTLVGVEA  117 (144)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT-CCSSSEEEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHHHcC-CCCCCEEEEEEC
Confidence            59999887766644        256677788765542                    2345556666 77899886 43 


Q ss_pred             --CEEEe
Q 047313           89 --GRYIG   93 (174)
Q Consensus        89 --G~~IG   93 (174)
                        |+.+.
T Consensus       118 ~~G~i~~  124 (144)
T 1i5g_A          118 DSGNIIT  124 (144)
T ss_dssp             TTCCEEE
T ss_pred             CCCcEEe
Confidence              66553

>1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1

Probab=92.08  E-value=0.075  Score=43.00  Aligned_cols=39  Identities=23%  Similarity=0.625  Sum_probs=28.9

Q ss_pred             CCCCCCCCcceE---------------eCCCCCCCeeeeecCCCCCCccccccCcccccCccc
Q 047313          121 CSCNGCGNIRFV---------------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV  168 (174)
Q Consensus       121 ~~C~~Cgg~r~v---------------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~  168 (174)
                      ..|..|+|.+.+               +|+.|+|+.+++..         ..+|+.|+-.|.+
T Consensus        55 ~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~---------~~~C~~C~G~g~~  108 (248)
T 1nlt_A           55 KKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP---------KDRCKSCNGKKVE  108 (248)
T ss_dssp             CCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT---------TSBCSSSTTSCEE
T ss_pred             ccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCCcCEEecc---------CCCCcccCCCceE
Confidence            579999988753               69999998776411         4678888877765

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=91.92  E-value=0.68  Score=32.67  Aligned_cols=54  Identities=11%  Similarity=-0.005  Sum_probs=35.4

Q ss_pred             CChhHHHHHHHHHh--------CCCcEEEEECCCCHH--------------------HHHHHHHhcCCCCCCcEEE-E--
Q 047313           39 TFEDCRTIRFLLQS--------FKVTFYERDVSLHME--------------------FRDELWSSLSGRVIPPRLF-I--   87 (174)
Q Consensus        39 ~c~~C~~vr~iL~~--------~~v~~~e~Dv~~~~~--------------------~~~el~~~~g~~~~~P~vF-I--   87 (174)
                      .|+.|......|+.        .++.+..+++..+.+                    ...++.+.++ ...+|.++ |  
T Consensus        39 wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~~~Pt~~lid~  117 (146)
T 1o8x_A           39 WCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFN-VESIPTLIGVDA  117 (146)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHHTT-CCSSSEEEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHHhC-CCCCCEEEEEEC
Confidence            59999887766643        256788888876542                    2345666666 77899886 4  


Q ss_pred             -CCEEEe
Q 047313           88 -KGRYIG   93 (174)
Q Consensus        88 -~G~~IG   93 (174)
                       +|+.+.
T Consensus       118 ~~G~i~~  124 (146)
T 1o8x_A          118 DSGDVVT  124 (146)
T ss_dssp             TTCCEEE
T ss_pred             CCCeEEE
Confidence             466554

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=91.82  E-value=0.53  Score=33.21  Aligned_cols=75  Identities=11%  Similarity=0.150  Sum_probs=39.7

Q ss_pred             CChhHHHHHHHHHh-------CCCcEEEEECCCC-HHH-H-----------------HHHHHhcCCCCCCcEEEE---CC
Q 047313           39 TFEDCRTIRFLLQS-------FKVTFYERDVSLH-MEF-R-----------------DELWSSLSGRVIPPRLFI---KG   89 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~-~~~-~-----------------~el~~~~g~~~~~P~vFI---~G   89 (174)
                      .|+.|......|+.       .++.+..+++..+ .+. +                 .++.+.++ ...+|.+||   +|
T Consensus        39 ~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-i~~~P~~~lid~~G  117 (153)
T 2l5o_A           39 SCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFG-TQVYPTSVLIGKKG  117 (153)
T ss_dssp             TCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHT-CCSSSEEEEECSSS
T ss_pred             CCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcC-CCccCeEEEECCCC
Confidence            69999877665543       2466666665322 111 1                 12333344 678899876   67


Q ss_pred             EEE---eccchhhhhhhcCchhHHhhcCCC
Q 047313           90 RYI---GGADEVVGLHEQGKLKKLLEGIPR  116 (174)
Q Consensus        90 ~~I---GG~del~~l~e~G~L~~~L~~~~~  116 (174)
                      +.+   .|..+..+|.+  .|+++|+....
T Consensus       118 ~i~~~~~g~~~~~~l~~--~l~~ll~~~~~  145 (153)
T 2l5o_A          118 EILKTYVGEPDFGKLYQ--EIDTAWRNSDA  145 (153)
T ss_dssp             CCCEEEESSCCHHHHHH--HHHHHHHCCSS
T ss_pred             cEEEEEcCCCCHHHHHH--HHHHHHHhhhh
Confidence            542   33333333332  35666655443

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=91.47  E-value=1  Score=31.76  Aligned_cols=76  Identities=9%  Similarity=0.034  Sum_probs=40.0

Q ss_pred             CChhHHHHHHHHHh----C---CCcEEEEECCCC-HHHHHH------------------HHHhcCCCCCCc-EEEE--CC
Q 047313           39 TFEDCRTIRFLLQS----F---KVTFYERDVSLH-MEFRDE------------------LWSSLSGRVIPP-RLFI--KG   89 (174)
Q Consensus        39 ~c~~C~~vr~iL~~----~---~v~~~e~Dv~~~-~~~~~e------------------l~~~~g~~~~~P-~vFI--~G   89 (174)
                      .|+.|......|..    +   ++.+..+++..+ ++...+                  +.+.++ ...+| .++|  +|
T Consensus        39 ~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~~~P~~~lid~~G  117 (154)
T 3kcm_A           39 WCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG-TTGVPETFVIDRHG  117 (154)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHT-CCSBCEEEEECTTS
T ss_pred             CCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhC-CCCCCeEEEECCCC
Confidence            69999987666644    2   566777777665 332222                  444455 67899 4456  56


Q ss_pred             EEEeccchhhhhhhcCchhHHhhcCCC
Q 047313           90 RYIGGADEVVGLHEQGKLKKLLEGIPR  116 (174)
Q Consensus        90 ~~IGG~del~~l~e~G~L~~~L~~~~~  116 (174)
                      +.+.-+...... ...+|.++|+.+..
T Consensus       118 ~i~~~~~g~~~~-~~~~l~~~l~~l~~  143 (154)
T 3kcm_A          118 VILKKVVGAMEW-DHPEVIAFLNNELS  143 (154)
T ss_dssp             BEEEEEESCCCT-TSHHHHHHHHTC--
T ss_pred             cEEEEEcCCCcc-ccHHHHHHHHHHHH
Confidence            544322111111 12355566655443

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=91.33  E-value=0.49  Score=34.47  Aligned_cols=60  Identities=12%  Similarity=0.243  Sum_probs=33.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C-CCc--EEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-KVT--FYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-~v~--~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      .||+|+.+|    ..|+.|..+.-+|+.    + ++.  |..+|+..    -.++.+.++ -..+|.+++  +|+.++
T Consensus        37 ~vv~f~~~~----~~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~----~~~la~~~~-V~~iPT~~~fk~G~~v~  105 (142)
T 2es7_A           37 GVILLSSDP----RRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQ----SEAIGDRFN-VRRFPATLVFTDGKLRG  105 (142)
T ss_dssp             EEEEECCCS----CC----CCHHHHHHHHHHTCTTSCCEEEEECHHH----HHHHHHTTT-CCSSSEEEEESCC----
T ss_pred             EEEEEECCC----CCCccHHHHHHHHHHHHHHhcccceeEEEEECCC----CHHHHHhcC-CCcCCeEEEEeCCEEEE
Confidence            455555443    148999888777764    2 467  77787743    344666666 889999865  887543

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=90.89  E-value=0.14  Score=32.00  Aligned_cols=23  Identities=26%  Similarity=0.726  Sum_probs=11.2

Q ss_pred             CCCCCCCcceE---eCCCCCCCeeee
Q 047313          122 SCNGCGNIRFV---LCSNCSGSCKVF  144 (174)
Q Consensus       122 ~C~~Cgg~r~v---~C~~C~Gs~k~~  144 (174)
                      .|..|+|.+.+   +|+.|+|+.++.
T Consensus        11 ~C~~C~GsG~~~~~~C~~C~G~G~v~   36 (53)
T 2bx9_A           11 ACPKCERAGEIEGTPCPACSGKGVIL   36 (53)
T ss_dssp             ECTTTTTSSEETTEECTTTTTSSEEE
T ss_pred             cCCCCcceeccCCCCCccCCCCccEE
Confidence            35555554432   455555554443

>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A

Probab=90.76  E-value=0.17  Score=31.60  Aligned_cols=28  Identities=32%  Similarity=0.716  Sum_probs=23.2

Q ss_pred             eEeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          131 FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       131 ~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      -.+|+.|+|+.++.           ..+|+.|+-.|+++
T Consensus         9 ~~~C~~C~GsG~~i-----------~~~C~~C~G~G~v~   36 (53)
T 3lcz_A            9 ETTCPNCNGSGREE-----------PEPCPKCLGKGVIL   36 (53)
T ss_dssp             EEECTTTTTSCEET-----------TEECTTTTTSSEEE
T ss_pred             eccCcCCcccccCC-----------CCcCCCCCCcEEEE
Confidence            46899999998873           37899999999864

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=90.72  E-value=0.46  Score=33.12  Aligned_cols=56  Identities=13%  Similarity=0.122  Sum_probs=34.4

Q ss_pred             CChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHH---------------------HHHhcCCCCCCcEEEE---
Q 047313           39 TFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDE---------------------LWSSLSGRVIPPRLFI---   87 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~e---------------------l~~~~g~~~~~P~vFI---   87 (174)
                      .|+.|......|..       .++.+..+++..+++..+.                     +.+.++ ...+|.+||   
T Consensus        42 ~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-i~~~P~~~lid~  120 (148)
T 3hcz_A           42 QCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKITYD-IYATPVLYVLDK  120 (148)
T ss_dssp             GGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHHHC-CCSSCEEEEECT
T ss_pred             CCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHhcC-cCCCCEEEEECC
Confidence            59999766555543       3577888888755443222                     333344 567899875   


Q ss_pred             CCEEEecc
Q 047313           88 KGRYIGGA   95 (174)
Q Consensus        88 ~G~~IGG~   95 (174)
                      +|+.+...
T Consensus       121 ~G~i~~~~  128 (148)
T 3hcz_A          121 NKVIIAKR  128 (148)
T ss_dssp             TCBEEEES
T ss_pred             CCcEEEec
Confidence            67665443

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=90.65  E-value=1.1  Score=34.04  Aligned_cols=57  Identities=12%  Similarity=0.075  Sum_probs=41.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRY   91 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~   91 (174)
                      .-||.|+++      .|+.|..+...|+.    +  .+.+..+|+..+++    +.+..+ ...+|.+++  +|+.
T Consensus       116 ~vlv~F~a~------wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~G~~  180 (210)
T 3apq_A          116 LWFVNFYSP------GCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM----LCRMKG-VNSYPSLFIFRSGMA  180 (210)
T ss_dssp             CEEEEEECT------TCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH----HHHHTT-CCSSSEEEEECTTSC
T ss_pred             cEEEEEeCC------CChhHHHHHHHHHHHHHHhcCceEEEEEECCccHH----HHHHcC-CCcCCeEEEEECCCc
Confidence            345566665      59999998888765    2  37889999987765    444456 788999976  6754

>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5

Probab=90.58  E-value=0.048  Score=44.37  Aligned_cols=69  Identities=9%  Similarity=-0.090  Sum_probs=45.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC---HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH---MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~---~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++||...      .+++|.+++.+|+.+||+|+.+.|...   +.+..+. .+......+|.|..+|..|.....+.+.
T Consensus         2 ~~Lyy~~------~s~~~~~vr~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~ln~P~gkVPvL~d~g~~l~ES~aI~~Y   73 (280)
T 1b8x_A            2 PILGYWK------IKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKF-ELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (280)
T ss_dssp             CCCEEES------SSTTTHHHHHHHHHTTCCCCCEEECSSTTTTTTSSTT-TTCCSSCCSSBEECSSCEECSHHHHHHH
T ss_pred             cEEEEeC------CCchHHHHHHHHHHcCCCcEEEEeCCCChhhhhhhhh-ccCCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            4566665      579999999999999999988877532   1111111 1110245799998777777666555444

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=90.47  E-value=0.51  Score=36.07  Aligned_cols=58  Identities=16%  Similarity=0.179  Sum_probs=39.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh---------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEe
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS---------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIG   93 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~---------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IG   93 (174)
                      -+|.|+++      .|+.|..+...|..         ..+.+..+|+..+++    +.+.++ ...+|.+++  +|+.+.
T Consensus       150 ~~v~f~a~------wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~g~~~~  218 (241)
T 3idv_A          150 ILVEFYAP------WCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD----LAKRFD-VSGYPTLKIFRKGRPYD  218 (241)
T ss_dssp             EEEEEECT------TCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHH----HHHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEEECC------CCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHH----HHHHcC-CcccCEEEEEECCeEEE
Confidence            35556665      59999766544432         128899999988765    444556 778998854  887764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=90.45  E-value=0.095  Score=39.62  Aligned_cols=55  Identities=13%  Similarity=0.090  Sum_probs=33.5

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhc-CCCCCCcEEEE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSL-SGRVIPPRLFI   87 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~-g~~~~~P~vFI   87 (174)
                      -.|+.|+.+|      |++|....-+|+..     ++.+..+|+..+++.   ..+.. .+...+|.+++
T Consensus        56 ~vvv~F~A~W------C~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~---~~~~~~~~v~~iPt~i~  116 (167)
T 1z6n_A           56 YRLLVAGEMW------CPDCQINLAALDFAQRLQPNIELAIISKGRAEDD---LRQRLALERIAIPLVLV  116 (167)
T ss_dssp             EEEEEECCTT------CHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHH---TTTTTTCSSCCSSEEEE
T ss_pred             EEEEEEECCC------ChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHH---HHHHHHcCCCCcCeEEE
Confidence            3466777775      99999988887653     456666666432222   22221 12678998643

>2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C*

Probab=90.15  E-value=0.2  Score=31.20  Aligned_cols=29  Identities=24%  Similarity=0.655  Sum_probs=23.3

Q ss_pred             ceEeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          130 RFVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       130 r~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      -..+|+.|+|+.++.           ...|+.|+-.|.++
T Consensus         8 ~~~~C~~C~GsG~~~-----------~~~C~~C~G~G~v~   36 (53)
T 2bx9_A            8 LEVACPKCERAGEIE-----------GTPCPACSGKGVIL   36 (53)
T ss_dssp             HEEECTTTTTSSEET-----------TEECTTTTTSSEEE
T ss_pred             ccccCCCCcceeccC-----------CCCCccCCCCccEE
Confidence            357999999998872           25799999988764

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=89.64  E-value=0.15  Score=36.69  Aligned_cols=61  Identities=7%  Similarity=0.070  Sum_probs=37.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHH-hCC-------CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEec
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQ-SFK-------VTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~-~~~-------v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG   94 (174)
                      .+|.|++.      .|++|+.+...+. .+.       +++..+||..+..  ..+....+ -..+|.+.  -+|+-|+-
T Consensus        21 ~LV~F~A~------wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~--~~la~~~~-V~g~PT~i~f~~G~ev~R   91 (116)
T 3dml_A           21 RLLMFEQP------GCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLP--PGLELARP-VTFTPTFVLMAGDVESGR   91 (116)
T ss_dssp             EEEEEECT------TCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCC--TTCBCSSC-CCSSSEEEEEETTEEEEE
T ss_pred             EEEEEECC------CCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCc--hhHHHHCC-CCCCCEEEEEECCEEEee
Confidence            35555555      6999999866553 332       6788999987631  11222223 56788884  48987663

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=89.59  E-value=2.6  Score=30.02  Aligned_cols=57  Identities=12%  Similarity=0.131  Sum_probs=37.0

Q ss_pred             CChhHHHHHHHHH-------hCCCcEEEEECCCCHHHHHH-------------------HHHhcCCCCCCcEEEE---CC
Q 047313           39 TFEDCRTIRFLLQ-------SFKVTFYERDVSLHMEFRDE-------------------LWSSLSGRVIPPRLFI---KG   89 (174)
Q Consensus        39 ~c~~C~~vr~iL~-------~~~v~~~e~Dv~~~~~~~~e-------------------l~~~~g~~~~~P~vFI---~G   89 (174)
                      .|+.|......|.       ..++.+..+++..+.+..+.                   +.+.+| ...+|.+||   +|
T Consensus        46 wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-v~~~P~~~lid~~G  124 (152)
T 2lrt_A           46 NNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN-VTNLPSVFLVNRNN  124 (152)
T ss_dssp             TCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT-CCSCSEEEEEETTT
T ss_pred             CChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC-cccCceEEEECCCC
Confidence            5999987555443       24678888888776553332                   445555 667898865   68


Q ss_pred             EEEeccc
Q 047313           90 RYIGGAD   96 (174)
Q Consensus        90 ~~IGG~d   96 (174)
                      +.+.-+.
T Consensus       125 ~i~~~~~  131 (152)
T 2lrt_A          125 ELSARGE  131 (152)
T ss_dssp             EEEEETT
T ss_pred             eEEEecC
Confidence            7765443

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=89.42  E-value=1.8  Score=30.27  Aligned_cols=54  Identities=9%  Similarity=-0.039  Sum_probs=34.7

Q ss_pred             CChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHH------------------HHHHhcCCCCCCcEE-EE--CCE
Q 047313           39 TFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRD------------------ELWSSLSGRVIPPRL-FI--KGR   90 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~------------------el~~~~g~~~~~P~v-FI--~G~   90 (174)
                      .|+.|......|..       .++.+..+++..+++...                  ++.+.++ ...+|.+ +|  +|+
T Consensus        39 ~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~~~P~~~lid~~G~  117 (152)
T 3gl3_A           39 WCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYG-VKGMPTSFLIDRNGK  117 (152)
T ss_dssp             TCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTT-CCSSSEEEEECTTSB
T ss_pred             cCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcC-CCCCCeEEEECCCCC
Confidence            69999887665543       357788888876654333                  3344455 6789995 45  565


Q ss_pred             EEe
Q 047313           91 YIG   93 (174)
Q Consensus        91 ~IG   93 (174)
                      .+.
T Consensus       118 i~~  120 (152)
T 3gl3_A          118 VLL  120 (152)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=89.24  E-value=0.04  Score=43.61  Aligned_cols=69  Identities=10%  Similarity=-0.086  Sum_probs=44.7

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh--cC-CCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS--LS-GRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~--~g-~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++||+.+      .+++|.+++.+|+.+||+|+.+.+.... ..+++...  .+ ...++|.|..+|..|.....+.+.
T Consensus         3 ~~Ly~~~------~s~~~~~vr~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~VPvL~d~~~~l~eS~aI~~y   74 (254)
T 1bg5_A            3 PILGYWK------IKGLVQPTRLLLEYLEEKYEEHLYERDE-GDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   74 (254)
T ss_dssp             CBCCSCS------CSTTTHHHHHHHHHTTCCCBCCCCCGGG-THHHHHHTTTTCCSSCCSSBCCCSSCCCBSHHHHHHH
T ss_pred             cEEEEeC------CcchhHHHHHHHHHcCCCceEEeeCCCC-HHHHhhcccccCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            4566665      5799999999999999999988876420 01122221  12 255799998666656555444443

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=89.24  E-value=1.5  Score=31.99  Aligned_cols=54  Identities=15%  Similarity=0.024  Sum_probs=35.7

Q ss_pred             CChhHHHHHHHHHh--------CCCcEEEEECCCCHHHH--------------------HHHHHhcCCCCCCcEEEE-C-
Q 047313           39 TFEDCRTIRFLLQS--------FKVTFYERDVSLHMEFR--------------------DELWSSLSGRVIPPRLFI-K-   88 (174)
Q Consensus        39 ~c~~C~~vr~iL~~--------~~v~~~e~Dv~~~~~~~--------------------~el~~~~g~~~~~P~vFI-~-   88 (174)
                      .|+.|......|+.        .++.+..+++..+.+..                    .++.+.++ ...+|.+|| + 
T Consensus        59 wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-v~~~Pt~~lid~  137 (165)
T 3s9f_A           59 WCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKKYS-VESIPTLIGLNA  137 (165)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHHTT-CCSSSEEEEEET
T ss_pred             cChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHHcC-CCCCCEEEEEeC
Confidence            59999887766643        25677778876664321                    45555666 778998865 3 


Q ss_pred             --CEEEe
Q 047313           89 --GRYIG   93 (174)
Q Consensus        89 --G~~IG   93 (174)
                        |+.+.
T Consensus       138 ~~G~iv~  144 (165)
T 3s9f_A          138 DTGDTVT  144 (165)
T ss_dssp             TTCCEEE
T ss_pred             CCCEEEe
Confidence              76664

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=88.82  E-value=2.8  Score=29.47  Aligned_cols=56  Identities=11%  Similarity=0.131  Sum_probs=34.3

Q ss_pred             CChh--HHHHHHHHHh--------CCCcEEEEECCCCHH-HHH--------------------HHHHhcCCCCCCcEEE-
Q 047313           39 TFED--CRTIRFLLQS--------FKVTFYERDVSLHME-FRD--------------------ELWSSLSGRVIPPRLF-   86 (174)
Q Consensus        39 ~c~~--C~~vr~iL~~--------~~v~~~e~Dv~~~~~-~~~--------------------el~~~~g~~~~~P~vF-   86 (174)
                      .|+.  |......|..        .++.+..+++..+++ .++                    ++.+.+| ...+|.+| 
T Consensus        44 ~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-v~~~P~~~l  122 (150)
T 3fw2_A           44 WNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEVAKQYS-IYKIPANIL  122 (150)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHHHTT-CCSSSEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHHHHHcC-CCccCeEEE
Confidence            5999  9876655532        357777777776643 222                    3334445 66788876 


Q ss_pred             E--CCEEEecc
Q 047313           87 I--KGRYIGGA   95 (174)
Q Consensus        87 I--~G~~IGG~   95 (174)
                      |  +|+.+.-.
T Consensus       123 id~~G~i~~~~  133 (150)
T 3fw2_A          123 LSSDGKILAKN  133 (150)
T ss_dssp             ECTTSBEEEES
T ss_pred             ECCCCEEEEcc
Confidence            4  56666544

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=88.59  E-value=3.1  Score=31.80  Aligned_cols=46  Identities=15%  Similarity=0.189  Sum_probs=34.8

Q ss_pred             CChhHHHHHHHHHh-----------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CC
Q 047313           39 TFEDCRTIRFLLQS-----------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KG   89 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-----------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G   89 (174)
                      -|..|+.+.-+|+.           -+|.|-.+|+..++++    ...+| -.++|+|++  +|
T Consensus        55 wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~~l----a~~~~-I~siPtl~~F~~g  113 (178)
T 3ga4_A           55 SCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVPQL----VKDLK-LQNVPHLVVYPPA  113 (178)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCHHH----HHHTT-CCSSCEEEEECCC
T ss_pred             CChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCHHH----HHHcC-CCCCCEEEEEcCC
Confidence            59999999888874           2477899999887664    44556 889999853  55

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=88.58  E-value=0.85  Score=35.48  Aligned_cols=56  Identities=7%  Similarity=0.032  Sum_probs=37.3

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh----C-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      ..-+|.|+++|      |+.|.++...|+.    +     ++.+..+|+..+..  .++.+..+ ...+|.+++
T Consensus        31 ~~vlv~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~~--~~l~~~~~-v~~~Pt~~~   95 (244)
T 3q6o_A           31 SAWAVEFFASW------CGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEETN--SAVCRDFN-IPGFPTVRF   95 (244)
T ss_dssp             SEEEEEEECTT------CHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTTT--HHHHHHTT-CCSSSEEEE
T ss_pred             CeEEEEEECCc------CHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchhh--HHHHHHcC-CCccCEEEE
Confidence            34455666664      9999998877754    2     57788888844321  34555566 788999853

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=87.26  E-value=3.2  Score=31.42  Aligned_cols=53  Identities=13%  Similarity=0.036  Sum_probs=34.3

Q ss_pred             CChhHHHHHH----------HHHhCCCcEEEEECCCCHHHHHHHH----HhcCCCCCCcEEE-E--CCEEEe
Q 047313           39 TFEDCRTIRF----------LLQSFKVTFYERDVSLHMEFRDELW----SSLSGRVIPPRLF-I--KGRYIG   93 (174)
Q Consensus        39 ~c~~C~~vr~----------iL~~~~v~~~e~Dv~~~~~~~~el~----~~~g~~~~~P~vF-I--~G~~IG   93 (174)
                      .|+.|+.+..          +|.. ++.+..+|+...++..+.+.    .+.| ...+|.++ +  +|+.+-
T Consensus        50 WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~~~q~~~g-v~g~Pt~v~l~~dG~~v~  119 (173)
T 3ira_A           50 TCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMTVCQIILG-RGGWPLNIIMTPGKKPFF  119 (173)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHHHHHHHHS-CCCSSEEEEECTTSCEEE
T ss_pred             hhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHHHHHHHcC-CCCCcceeeECCCCCcee
Confidence            5999998554          2222 46677889887777655443    2335 77899874 5  577653

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=87.17  E-value=2.2  Score=31.51  Aligned_cols=67  Identities=13%  Similarity=0.146  Sum_probs=44.2

Q ss_pred             CCCcEEEEEee-cCCCCCCChhHHHHHHHHHh----C--C-CcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEE
Q 047313           22 GEDSVIFYTTS-LRGIRKTFEDCRTIRFLLQS----F--K-VTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRY   91 (174)
Q Consensus        22 ~~~~VvlYtts-l~~ir~~c~~C~~vr~iL~~----~--~-v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~   91 (174)
                      +.+.|+|+... |    -.|+.|+.+--+|++    +  + +.|..+|+..    -.++...+| -.++|++  |-||+.
T Consensus        33 ~~~~vlVdF~a~~----crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe----~~~lA~~yg-V~sIPTlilFk~G~~  103 (140)
T 2qgv_A           33 QAPDGVVLLSSDP----KRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQ----SEAIGDRFG-AFRFPATLVFTGGNY  103 (140)
T ss_dssp             TCSSEEEEECCCT----TTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHH----HHHHHHHHT-CCSSSEEEEEETTEE
T ss_pred             CCCCEEEEEeCCc----ccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCC----CHHHHHHcC-CccCCEEEEEECCEE
Confidence            34456666543 1    128888888888876    3  2 6677777743    345666667 8899987  679998


Q ss_pred             Eeccch
Q 047313           92 IGGADE   97 (174)
Q Consensus        92 IGG~de   97 (174)
                      ++-..-
T Consensus       104 v~~~~G  109 (140)
T 2qgv_A          104 RGVLNG  109 (140)
T ss_dssp             EEEEES
T ss_pred             EEEEec
Confidence            875443

>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5

Probab=87.07  E-value=0.74  Score=36.24  Aligned_cols=71  Identities=17%  Similarity=0.091  Sum_probs=46.0

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHH--h--cCCCCCCcEE--EECCEEEecc
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWS--S--LSGRVIPPRL--FIKGRYIGGA   95 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~--~--~g~~~~~P~v--FI~G~~IGG~   95 (174)
                      +...+++|..+      ..+.+.+++-+|...||+|+.+++..   ....++.  +  ..-...+|.|  ..+|..|...
T Consensus        16 ~~~~~~Ly~~~------~~~~~~~vrl~L~e~gi~ye~~~~~~---~~~~~~~~~~~~~nP~gkVPvL~~~d~g~~l~ES   86 (248)
T 2fno_A           16 GMNTFDLYYWP------VPFRGQLIRGILAHCGCSWDEHDVDA---IEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQM   86 (248)
T ss_dssp             SCBSEEEECCS------SSSTTHHHHHHHHHTTCCEECCCHHH---HHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESH
T ss_pred             CCCceEEEecC------CCCchHHHHHHHHHcCCCcEeeccch---HHHHHhccccccCCCCCCCCEEEeccCCEEEecH
Confidence            34568899876      34678999999999999999886531   1111221  1  2225689999  4577777665


Q ss_pred             chhhhh
Q 047313           96 DEVVGL  101 (174)
Q Consensus        96 del~~l  101 (174)
                      ..+.+.
T Consensus        87 ~AI~~Y   92 (248)
T 2fno_A           87 PAIAIY   92 (248)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=86.75  E-value=0.4  Score=35.60  Aligned_cols=58  Identities=7%  Similarity=0.021  Sum_probs=35.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE-E--CCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF-I--KGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF-I--~G~~I   92 (174)
                      -+|.|+++|      |++|+.+...+.+.       +..|..+||..+..   ++....+ ...+|+++ +  +|+.+
T Consensus        47 VlV~F~A~W------C~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~---~~~~~~~-v~~~PT~~f~~~~G~~v  114 (151)
T 3ph9_A           47 LMVIHHLED------CQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETT---DKNLSPD-GQYVPRIMFVDPSLTVR  114 (151)
T ss_dssp             EEEEECCTT------CHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCS---CGGGCTT-CCCSSEEEEECTTSCBC
T ss_pred             EEEEEECCC------CHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCch---hhHhhcC-CCCCCEEEEECCCCCEE
Confidence            455566664      99999988877642       23578888853311   1122234 57899985 4  46543

>4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A*

Probab=86.72  E-value=0.29  Score=37.23  Aligned_cols=65  Identities=11%  Similarity=0.108  Sum_probs=41.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECC--CCH-HHHHHHHHhcCCCCCCcEEEECC-EEEeccchh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS--LHM-EFRDELWSSLSGRVIPPRLFIKG-RYIGGADEV   98 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~--~~~-~~~~el~~~~g~~~~~P~vFI~G-~~IGG~del   98 (174)
                      +.||..+.     +|  ..+|+-+|..+||+|+.+.|.  ..+ ....++.++.- ..++|.+.++| ..|.....+
T Consensus         4 mkLY~~p~-----s~--s~rvri~L~e~gl~~e~~~vd~~~~~~~~~~~~~~~nP-~g~vP~L~~d~~~~l~eS~aI   72 (211)
T 4gci_A            4 MKLFYKPG-----AC--SLSPHIVLREAGLDFSIERVDLVTKKTETGADYLSINP-KGQVPALVLDDGSLLTEGVAI   72 (211)
T ss_dssp             EEEEECTT-----ST--THHHHHHHHHTTCCEEEEEEETTTTEETTSCBGGGTCT-TCCSCEEECTTSCEEECHHHH
T ss_pred             EEEEeCCC-----Cc--HHHHHHHHHHhCCCCeEEEecCCCCcccCCHHHHHhCC-CCCCCccccCCCCEEecCHHH
Confidence            56887752     33  578999999999999876553  221 11223444443 56899999877 545444433

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=86.41  E-value=2.3  Score=35.53  Aligned_cols=58  Identities=12%  Similarity=0.215  Sum_probs=41.2

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~   90 (174)
                      -+|.|+++|      |+.|.++...++.    +        .|.+-.+|+..+.+    +.+..+ ...+|++++  +|+
T Consensus        25 vlV~F~a~w------C~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~----l~~~~~-v~~~Pt~~~f~~G~   93 (382)
T 2r2j_A           25 ALVNFYADW------CRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSD----IAQRYR-ISKYPTLKLFRNGM   93 (382)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCHH----HHHHTT-CCEESEEEEEETTE
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccHH----HHHhcC-CCcCCEEEEEeCCc
Confidence            455666664      9999998877754    1        27788999987755    444556 778999865  887


Q ss_pred             EEe
Q 047313           91 YIG   93 (174)
Q Consensus        91 ~IG   93 (174)
                      .+.
T Consensus        94 ~~~   96 (382)
T 2r2j_A           94 MMK   96 (382)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            553

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=86.01  E-value=0.15  Score=35.70  Aligned_cols=27  Identities=11%  Similarity=0.085  Sum_probs=16.9

Q ss_pred             CChhHHHHHHHHHhC---------CCcEEEEECCCC
Q 047313           39 TFEDCRTIRFLLQSF---------KVTFYERDVSLH   65 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~---------~v~~~e~Dv~~~   65 (174)
                      .|+.|......|...         ++.+..+++..+
T Consensus        37 wC~~C~~~~~~l~~~~~~~~~~~~~~~v~~v~~d~~   72 (143)
T 2lus_A           37 WCPPCRGFTPILADMYSELVDDSAPFEIIFVSSDRS   72 (143)
Confidence            599998877766542         445555555433

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=85.30  E-value=7.6  Score=27.15  Aligned_cols=24  Identities=21%  Similarity=0.023  Sum_probs=15.6

Q ss_pred             CChhHHH-HHHHHHh-------CCCcEEEEEC
Q 047313           39 TFEDCRT-IRFLLQS-------FKVTFYERDV   62 (174)
Q Consensus        39 ~c~~C~~-vr~iL~~-------~~v~~~e~Dv   62 (174)
                      .|+.|.. +...|..       .++.+..+++
T Consensus        39 wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~   70 (158)
T 3eyt_A           39 LCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHT   70 (158)
T ss_dssp             TCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             cCcchhhhhhHHHHHHHHHhCcCCEEEEEEEe
Confidence            5999998 4555543       3566666665

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=85.00  E-value=3.6  Score=29.37  Aligned_cols=30  Identities=10%  Similarity=0.027  Sum_probs=22.0

Q ss_pred             CChhHHHHHHHHHh---CCCcEEEEECCCCHHH
Q 047313           39 TFEDCRTIRFLLQS---FKVTFYERDVSLHMEF   68 (174)
Q Consensus        39 ~c~~C~~vr~iL~~---~~v~~~e~Dv~~~~~~   68 (174)
                      .|++|......|+.   .++.+..+++..+++.
T Consensus        62 ~C~~C~~~~~~l~~l~~~~v~vv~v~~~~~~~~   94 (168)
T 2b1k_A           62 WCPTCRAEHQYLNQLSAQGIRVVGMNYKDDRQK   94 (168)
T ss_dssp             TCHHHHHHHHHHHHHHHTTCCEEEEEESCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEEECCCChHH
Confidence            69999887766644   4889999987665443

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=84.82  E-value=0.33  Score=35.91  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=36.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcC-CCCCCcEEE-E--CCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLS-GRVIPPRLF-I--KGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g-~~~~~P~vF-I--~G~~I   92 (174)
                      -||.|+++      .|+.|......|+.      .++.|..+|+..++..   +....+ ....+|.++ +  +|+.+
T Consensus        49 vlv~F~a~------WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~---~~~~~~~~~~~~Pt~~~~d~~G~~~  117 (164)
T 1sen_A           49 LMVIIHKS------WCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP---KDEDFSPDGGYIPRILFLDPSGKVH  117 (164)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC---SCGGGCTTCSCSSEEEEECTTSCBC
T ss_pred             EEEEEECC------CCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchH---HHHHhcccCCcCCeEEEECCCCCEE
Confidence            45555555      49999999998875      3577888888654331   222222 125689874 4  57644

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=83.36  E-value=3.6  Score=30.18  Aligned_cols=63  Identities=14%  Similarity=0.256  Sum_probs=43.6

Q ss_pred             cEEEEEeecCCCCCCC--hhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEec
Q 047313           25 SVIFYTTSLRGIRKTF--EDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c--~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG   94 (174)
                      .|+|+...     ..|  +.|+.+--+|++    +  ++.|..+|+..+++    +...+| -.++|++  |-||+.++-
T Consensus        35 ~vlVdF~A-----~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~~----la~~yg-V~siPTlilFkdG~~v~~  104 (137)
T 2qsi_A           35 IVVLFFRG-----DAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAERG----LMARFG-VAVCPSLAVVQPERTLGV  104 (137)
T ss_dssp             EEEEEECC-----CTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHHH----HHHHHT-CCSSSEEEEEECCEEEEE
T ss_pred             cEEEEEeC-----CccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCHH----HHHHcC-CccCCEEEEEECCEEEEE
Confidence            45555554     147  999999888875    3  36788888865444    555566 8899988  669998865


Q ss_pred             cch
Q 047313           95 ADE   97 (174)
Q Consensus        95 ~de   97 (174)
                      ..-
T Consensus       105 ~vG  107 (137)
T 2qsi_A          105 IAK  107 (137)
T ss_dssp             EES
T ss_pred             EeC
Confidence            433

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=83.25  E-value=3.1  Score=35.86  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=40.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C---CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F---KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~---~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~   90 (174)
                      -+|.|+++      .|+.|..+...++.    +   +|.+-.+|...++.    +.+.+| ...+|++++  +|+
T Consensus        34 ~lv~F~a~------wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pt~~~~~~g~   97 (504)
T 2b5e_A           34 VLAEFFAP------WCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD----LCMEHN-IPGFPSLKIFKNSD   97 (504)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH----HHHHTT-CCSSSEEEEEETTC
T ss_pred             EEEEEECC------CCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCHH----HHHhcC-CCcCCEEEEEeCCc
Confidence            45666666      49999998887764    2   58899999988755    455556 788999854  666

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=83.03  E-value=4.3  Score=31.82  Aligned_cols=77  Identities=16%  Similarity=0.145  Sum_probs=48.7

Q ss_pred             chHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-------C----CcEEEEECCCCHHHHHHHHHhcC
Q 047313            9 PFLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-------K----VTFYERDVSLHMEFRDELWSSLS   77 (174)
Q Consensus         9 ~~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-------~----v~~~e~Dv~~~~~~~~el~~~~g   77 (174)
                      +...+|.+.-......-++.|...|.    .|+.|..++.+|+..       .    |.|..+|+..+++.    .+.+|
T Consensus        12 ~~~~ql~~~~~~~~~pv~v~~~~~~~----~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~~----~~~~g   83 (243)
T 2hls_A           12 DFRRELRETLAEMVNPVEVHVFLSKS----GCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSDK----FSEFK   83 (243)
T ss_dssp             HHHHHHHHHHTTCCSCEEEEEEECSS----SCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHHH----HHHTT
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEeCCC----CCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHHH----HHhcC
Confidence            34445655543334444556666542    399999999888752       1    78889998776553    34445


Q ss_pred             CCCCCcEEEE-CC--EEEec
Q 047313           78 GRVIPPRLFI-KG--RYIGG   94 (174)
Q Consensus        78 ~~~~~P~vFI-~G--~~IGG   94 (174)
                       -..+|.+.| +|  +|.|.
T Consensus        84 -v~~~Pt~~i~~g~~~~~G~  102 (243)
T 2hls_A           84 -VERVPTVAFLGGEVRWTGI  102 (243)
T ss_dssp             -CCSSSEEEETTTTEEEESC
T ss_pred             -CCcCCEEEEECCceeEcCC
Confidence             668999977 44  55553

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=82.74  E-value=3.5  Score=33.46  Aligned_cols=57  Identities=12%  Similarity=0.225  Sum_probs=38.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~   90 (174)
                      -+|.|+++|      |+.|..+...|+.    +  .+.+..+|+..+..  .++.+.++ ...+|.+++  +|+
T Consensus        38 vlV~F~A~w------C~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~--~~l~~~~~-I~~~Pt~~~~~~g~  102 (298)
T 3ed3_A           38 SLVEFYAPW------CGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN--KALCAKYD-VNGFPTLMVFRPPK  102 (298)
T ss_dssp             EEEEEECTT------CHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTT--HHHHHHTT-CCBSSEEEEEECCC
T ss_pred             EEEEEECCC------CHHHHHHHHHHHHHHHHccCCcEEEEEEccCccC--HHHHHhCC-CCccceEEEEECCc
Confidence            455577764      9999998877765    2  36788888863221  34555566 788999865  664

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=82.29  E-value=5.2  Score=28.02  Aligned_cols=32  Identities=9%  Similarity=0.007  Sum_probs=21.4

Q ss_pred             CChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHH
Q 047313           39 TFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRD   70 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~   70 (174)
                      .|+.|......|+.       .++.+..+++...+..++
T Consensus        35 wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~~   73 (151)
T 3raz_A           35 WCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIGN   73 (151)
T ss_dssp             TCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHHH
Confidence            59999887776655       256677788754444433

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=81.93  E-value=11  Score=34.24  Aligned_cols=54  Identities=9%  Similarity=-0.091  Sum_probs=38.1

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      ..-+|.|+++      .|+.|..+...|+.      .++.+..+|+..++.+    .+.++ ...+|.+++
T Consensus       676 ~~v~v~F~a~------wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~~----~~~~~-v~~~Pt~~~  735 (780)
T 3apo_A          676 THWVVDFYAP------WSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQT----CQKAG-IKAYPSVKL  735 (780)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHH----HHHTT-CCSSSEEEE
T ss_pred             CeEEEEEECC------CCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHHH----HHhcC-CCcCCEEEE
Confidence            3445666666      49999988766654      2588999999877653    44456 778999865

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=81.61  E-value=8.6  Score=27.85  Aligned_cols=37  Identities=16%  Similarity=0.097  Sum_probs=24.3

Q ss_pred             CChhHHHHHHHHH-------hCCC------cEEEEECCC-CHHHHHHHHHh
Q 047313           39 TFEDCRTIRFLLQ-------SFKV------TFYERDVSL-HMEFRDELWSS   75 (174)
Q Consensus        39 ~c~~C~~vr~iL~-------~~~v------~~~e~Dv~~-~~~~~~el~~~   75 (174)
                      .|+.|......|.       ..++      .+..+++.. +++..+.+.+.
T Consensus        70 ~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~  120 (183)
T 3lwa_A           70 WCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTD  120 (183)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHH
T ss_pred             cCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHH
Confidence            6999987655553       3568      888888877 56655555443

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=80.97  E-value=2.4  Score=30.19  Aligned_cols=53  Identities=13%  Similarity=0.125  Sum_probs=30.4

Q ss_pred             CChhHHHHHHHHHh----C---CCcEEEEECCCC-H--------------HHHHHHHHhcCCCCCCcEE-EE--CCEEE
Q 047313           39 TFEDCRTIRFLLQS----F---KVTFYERDVSLH-M--------------EFRDELWSSLSGRVIPPRL-FI--KGRYI   92 (174)
Q Consensus        39 ~c~~C~~vr~iL~~----~---~v~~~e~Dv~~~-~--------------~~~~el~~~~g~~~~~P~v-FI--~G~~I   92 (174)
                      .|+.|......|..    +   ++.+..+++..+ .              ....++.+.++ ...+|.+ +|  +|+.+
T Consensus        52 ~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-v~~~P~~~lid~~G~i~  129 (158)
T 3hdc_A           52 WCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYG-ANRLPDTFIVDRKGIIR  129 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTT-CCSSSEEEEECTTSBEE
T ss_pred             cCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhC-CCCcceEEEEcCCCCEE
Confidence            69999886665544    3   455666665431 0              00124556666 7789995 45  55433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	174
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	4e-23
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	4e-13
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	1e-12
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	3e-10
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	5e-06
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	5e-05
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	4e-04

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.7 bits (212), Expect = 4e-23
 Identities = 20/88 (22%), Positives = 38/88 (43%), Gaps = 1/88 (1%)

Query: 25  SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLS-GRVIPP 83
            +  Y+TS+ G R+       +  +L   ++ +   D+S     RDE+ +     +  PP
Sbjct: 3   GLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPP 62

Query: 84  RLFIKGRYIGGADEVVGLHEQGKLKKLL 111
           ++     Y G  +  V   EQ  L++ L
Sbjct: 63  QIVNGNHYCGDYELFVEAVEQDTLQEFL 90

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.4 bits (146), Expect = 4e-13
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
            + I  +L S  V +   D+    E R     + S     P+L+++G  +GG D V  L 
Sbjct: 33  SKQILEILNSTGVEYETFDILEDEEVRQG-LKTFSNWPTYPQLYVRGDLVGGLDIVKELK 91

Query: 103 EQGKLKKLLEG 113
           + G+L  +L+G
Sbjct: 92  DNGELLPILKG 102

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 58.4 bits (141), Expect = 1e-12
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)

Query: 43  CRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH 102
           C   + LL S  V+F E  +  +   R+E+    SGR   P++FI  ++IGG D++  L 
Sbjct: 14  CHRAKALLSSKGVSFQELPIDGNAAKREEMIK-RSGRTTVPQIFIDAQHIGGYDDLYALD 72

Query: 103 EQGKLKKLLE 112
            +G L  LL+
Sbjct: 73  ARGGLDPLLK 82

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 52.8 bits (126), Expect = 3e-10
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 23  EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKV-----TFYERDVSLHMEFRDELWSSLS 77
              V+ +         T   CR  + LL           F +   +       +    L+
Sbjct: 11  PGKVVVFIKP------TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLT 64

Query: 78  GRVIPPRLFIKGRYIGGADEVVGLHEQGKLKKLLE 112
           G    PR+FI    IGG  ++  +H++G+L   L+
Sbjct: 65  GARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQ 99

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 40.3 bits (94), Expect = 5e-06
 Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 8/77 (10%)

Query: 23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIP 82
          ++S+  +T            C   + LL    ++F E  +            ++SGR   
Sbjct: 4  QESISIFTKPGCP------FCAKAKQLLHDKGLSFEEIILGHDATIVSVR--AVSGRTTV 55

Query: 83 PRLFIKGRYIGGADEVV 99
          P++FI G++IGG+D++ 
Sbjct: 56 PQVFIGGKHIGGSDDLE 72

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 38.1 bits (88), Expect = 5e-05
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 43  CRTIRFLLQSFK-----VTFYERDVSLHMEFRDELWSSLSGRVIP-PRLFIKGRYIGGAD 96
           C   + L +          +   D+      +++L       V   P++F+  ++IGG  
Sbjct: 14  CVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYT 73

Query: 97  EVVGLHEQ 104
           +     ++
Sbjct: 74  DFAAWVKE 81

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (81), Expect = 4e-04
 Identities = 12/81 (14%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 25  SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPR 84
            +  YT +          C   +  +++    F   +V    E  + L +    ++  P 
Sbjct: 2   RITIYTRNDCV------QCHATKRAMENRGFDFEMINVDRVPEAAEALRAQGFRQL--PV 53

Query: 85  LFIKGRYIGG--ADEVVGLHE 103
           +        G   D +  LH 
Sbjct: 54  VIAGDLSWSGFRPDMINRLHP 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	174
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.92
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.91
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.89
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.8
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.77
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.77
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.75
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.68
d1wjka_	100	Thioredoxin-like structure containing protein C330	98.98
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.98
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	98.52
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.4
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	98.32
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	98.3
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	98.26
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	98.22
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	98.2
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	98.11
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	98.03
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	97.9
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	97.86
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	97.85
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	97.82
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	97.78
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	97.7
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	97.6
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	97.55
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	97.52
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	97.49
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	97.41
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	97.35
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.06
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	97.02
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	96.9
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	96.82
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	96.8
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	96.77
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	96.54
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.51
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	96.48
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	96.45
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	96.43
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	96.43
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	96.4
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	96.37
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	96.35
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	96.28
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	96.22
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.11
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	96.05
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	95.99
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.97
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.94
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	95.85
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	95.65
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	95.64
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	95.62
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	95.55
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	95.43
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	95.24
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	95.13
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	95.11
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	94.99
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	94.85
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.83
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	94.59
d1exka_	79	Cysteine-rich domain of the chaperone protein DnaJ	94.38
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	94.13
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	94.13
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	93.78
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	93.47
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	93.15
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	92.6
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	92.32
d1nlta3	74	Mitochondrial protein import protein mas5 (Hsp40,	92.31
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	92.15
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	91.86
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	91.81
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	91.58
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	89.31
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	89.26
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	88.41
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	86.71
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	86.55
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	85.16
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	84.67
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	83.95
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	83.89
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	83.7
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	82.41
d1oe8a2	81	Class alpha GST {Blood fluke (Schistosoma haematob	81.73
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	81.36

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.92  E-value=1.6e-25  Score=153.50  Aligned_cols=81  Identities=32%  Similarity=0.495  Sum_probs=78.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhhc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHEQ  104 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e~  104 (174)
                      +|+||+++      +||+|.+|+++|++++|+|+++||+.++..++++.+.+| .+++|||||||++|||++++++|+++
T Consensus         2 ~I~iys~~------~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g-~~tvP~i~i~~~~IGG~~el~~l~~~   74 (82)
T d1fova_           2 NVEIYTKE------TCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSG-RTTVPQIFIDAQHIGGYDDLYALDAR   74 (82)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHS-SCCSCEEEETTEEEESHHHHHHHHHT
T ss_pred             cEEEEeCC------CCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhC-CCCCCeEEECCEEEecHHHHHHHHHc
Confidence            59999998      799999999999999999999999999999999999998 99999999999999999999999999


Q ss_pred             CchhHHhh
Q 047313          105 GKLKKLLE  112 (174)
Q Consensus       105 G~L~~~L~  112 (174)
                      |+|+++|+
T Consensus        75 g~L~~lLk   82 (82)
T d1fova_          75 GGLDPLLK   82 (82)
T ss_dssp             TCSHHHHC
T ss_pred             CCHHHHhC
Confidence            99999985

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.5e-25  Score=157.51  Aligned_cols=90  Identities=22%  Similarity=0.362  Sum_probs=85.2

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECCEEEeccchhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ..|+||+|+++++|++-++|.+++++|++++|+|+++||+.|+..+++++++.|. ..++|||||||+||||++++.+|+
T Consensus         2 ~~i~vy~ts~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~del~~~~   81 (93)
T d1t1va_           2 SGLRVYSTSVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYELFVEAV   81 (93)
T ss_dssp             CCEEEEECSSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHHHHHHHH
T ss_pred             CCEEEEEccCcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEEEECCEEEecHHHHHHHH
Confidence            4599999999999999999999999999999999999999999999999999873 569999999999999999999999


Q ss_pred             hcCchhHHhhc
Q 047313          103 EQGKLKKLLEG  113 (174)
Q Consensus       103 e~G~L~~~L~~  113 (174)
                      ++|+|.++|+.
T Consensus        82 e~g~L~~~lk~   92 (93)
T d1t1va_          82 EQDTLQEFLKL   92 (93)
T ss_dssp             HTTCHHHHTTC
T ss_pred             HCCCHHHHhcc
Confidence            99999999974

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.3e-24  Score=155.90  Aligned_cols=96  Identities=23%  Similarity=0.317  Sum_probs=86.8

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      ..+++||||++... ..+.||+|.+|+++|++++++|+++||..+++.++++.+.++ +.|+|||||+|++|||+|++++
T Consensus        12 i~~~~VvvF~Kgt~-~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~-~~TvPqIFi~g~~IGG~ddl~~   89 (109)
T d1wika_          12 TNKASVMLFMKGNK-QEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN-WPTYPQLYVRGDLVGGLDIVKE   89 (109)
T ss_dssp             HTTSSEEEEESSTT-TCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS-CCSSCEEECSSSEEECHHHHHH
T ss_pred             HhcCCEEEEeCCCC-CCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcC-CCCCCeEEECCEEEcCHHHHHH
Confidence            46789999998531 234699999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             hhhcCchhHHhhcCCCCC
Q 047313          101 LHEQGKLKKLLEGIPRNL  118 (174)
Q Consensus       101 l~e~G~L~~~L~~~~~~~  118 (174)
                      |+++|+|.++|+..++..
T Consensus        90 l~~~G~L~~lL~~~~~~~  107 (109)
T d1wika_          90 LKDNGELLPILKGESGPS  107 (109)
T ss_dssp             HHHHTCSHHHHHTCCSCS
T ss_pred             HHHCCCHHHHHHhcCCCC
Confidence            999999999999876653

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.89  E-value=7.8e-24  Score=151.68  Aligned_cols=90  Identities=21%  Similarity=0.311  Sum_probs=78.8

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCc-----EEEEECCCCHHHHH-HHHHhcCCCCCCcEEEECCEEEec
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVT-----FYERDVSLHMEFRD-ELWSSLSGRVIPPRLFIKGRYIGG   94 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~-----~~e~Dv~~~~~~~~-el~~~~g~~~~~P~vFI~G~~IGG   94 (174)
                      ..+++||||+++      .||+|.+|+++|++++++     |+++|+..|....+ .+.+.+| ++++|||||+|++|||
T Consensus         9 i~~~~Vviysk~------~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g-~~tvPqIfi~g~~IGG   81 (105)
T d1ktea_           9 IQPGKVVVFIKP------TCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTG-ARTVPRVFIGKECIGG   81 (105)
T ss_dssp             CCTTCEEEEECS------SCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHS-CCCSCEEEETTEEEES
T ss_pred             hccCCEEEEECC------CCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccC-CCcCcEEEECCEEEec
Confidence            467899999998      699999999999999976     67778877765544 4667777 8999999999999999


Q ss_pred             cchhhhhhhcCchhHHhhcCCCC
Q 047313           95 ADEVVGLHEQGKLKKLLEGIPRN  117 (174)
Q Consensus        95 ~del~~l~e~G~L~~~L~~~~~~  117 (174)
                      ++++++|+++|+|.++|+.+++.
T Consensus        82 ~~el~~l~~~G~L~~~L~~~Ga~  104 (105)
T d1ktea_          82 CTDLESMHKRGELLTRLQQVGAV  104 (105)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHTCB
T ss_pred             HHHHHHHHHCCCHHHHHHHcCCC
Confidence            99999999999999999987764

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.80  E-value=4.4e-20  Score=123.70  Aligned_cols=70  Identities=23%  Similarity=0.377  Sum_probs=63.0

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      +.+|+|||++      +||+|.+|+++|++++|+|+++||..+.. ++++.+.+| ..++|+|||||++|||+++|.+
T Consensus         4 ~~~I~iYs~~------~C~~C~~ak~lL~~~~i~~~~~~v~~~~~-~~~~~~~~~-~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           4 QESISIFTKP------GCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSG-RTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCEEEEECS------SCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTC-CSSSCEEEETTEEEESHHHHHH
T ss_pred             cCcEEEEECC------CCHHHHHHHHHHHHcCCCeEEEEccCcHH-HHHHHHHhC-CccCCEEEECCEEEEChHHHhh
Confidence            5689999997      79999999999999999999999988865 456777777 9999999999999999999865

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.77  E-value=8.5e-19  Score=117.12  Aligned_cols=64  Identities=23%  Similarity=0.341  Sum_probs=59.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccc
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGAD   96 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~d   96 (174)
                      +|+||+++      +|++|.+|+++|+++||+|+++||..+++.+++++.. | ..++|+|||||++|||++
T Consensus         2 ~v~iYt~~------~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~-g-~~tvP~i~i~g~~igGf~   65 (74)
T d1r7ha_           2 SITLYTKP------ACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL-G-YVQAPVVEVDGEHWSGFR   65 (74)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHT-T-CBCCCEEEETTEEEESCC
T ss_pred             EEEEEeCC------CChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHh-C-CCCcCEEEECCEEEeCCC
Confidence            58999997      8999999999999999999999999999988888664 6 889999999999999984

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=1.1e-18  Score=117.42  Aligned_cols=71  Identities=17%  Similarity=0.177  Sum_probs=63.6

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEecc--chhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGA--DEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~--del~~l~  102 (174)
                      +|+||+++      +|++|.+|+++|++++|+|+++||..+++.+++++. +| ..++|+|||||++|||+  |.+.+|+
T Consensus         2 ki~iYs~~------~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~g-~~tvP~i~i~~~~i~Gf~~d~i~~L~   73 (76)
T d1h75a_           2 RITIYTRN------DCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QG-FRQLPVVIAGDLSWSGFRPDMINRLH   73 (76)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TT-CCSSCEEEETTEEEESCCHHHHGGGS
T ss_pred             EEEEEeCC------CCccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHh-cC-CCCCCEEEECCEEEECCCHHHHHHHh
Confidence            59999997      799999999999999999999999999998888866 56 89999999999999998  6676665


Q ss_pred             h
Q 047313          103 E  103 (174)
Q Consensus       103 e  103 (174)
                      +
T Consensus        74 ~   74 (76)
T d1h75a_          74 P   74 (76)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=2.2e-19  Score=123.30  Aligned_cols=74  Identities=14%  Similarity=0.258  Sum_probs=65.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCC-CCCCcEEEECCEEEeccchh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSG-RVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~-~~~~P~vFI~G~~IGG~del   98 (174)
                      +||||+++      +||+|.+|+++|+++     +++|+++|+..+++.++++.+..+. ..++|||||||++|||++++
T Consensus         2 kvviysk~------~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el   75 (85)
T d1egoa_           2 QTVIFGRS------GCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDF   75 (85)
T ss_dssp             EEEEECCT------TSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHH
T ss_pred             EEEEEeCC------CCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEECCEEEECHHHH
Confidence            69999997      899999999999985     4789999997777778888888763 46899999999999999999


Q ss_pred             hhhhhc
Q 047313           99 VGLHEQ  104 (174)
Q Consensus        99 ~~l~e~  104 (174)
                      .++.++
T Consensus        76 ~~~~~~   81 (85)
T d1egoa_          76 AAWVKE   81 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998774

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.68  E-value=5e-17  Score=112.18  Aligned_cols=76  Identities=22%  Similarity=0.254  Sum_probs=60.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC-----CHHHHHHHHHhcC----CCCCCcEEEE-CCEEEecc
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL-----HMEFRDELWSSLS----GRVIPPRLFI-KGRYIGGA   95 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~-----~~~~~~el~~~~g----~~~~~P~vFI-~G~~IGG~   95 (174)
                      +.||+.+.+  .+.||+|.+|+++|++++++|+++++..     +...++++.+..+    ++.|+||||| ||++|||+
T Consensus         2 ~~Iy~~~~~--~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~   79 (87)
T d1abaa_           2 FKVYGYDSN--IHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF   79 (87)
T ss_dssp             EEEEECCTT--TSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred             EEEEEeCCC--CCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECH
Confidence            568987621  2359999999999999999999999854     3566667766543    3789999999 69999999


Q ss_pred             chhhhhhh
Q 047313           96 DEVVGLHE  103 (174)
Q Consensus        96 del~~l~e  103 (174)
                      ++|+++.+
T Consensus        80 del~e~~k   87 (87)
T d1abaa_          80 DQLREYFK   87 (87)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHhC
Confidence            99988753

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.98  E-value=1.2e-10  Score=81.24  Aligned_cols=80  Identities=16%  Similarity=0.311  Sum_probs=62.1

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE--eccchhhh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI--GGADEVVG  100 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I--GG~del~~  100 (174)
                      ...|++|+++      .|+.|+.++.+|+.+...|..+++..|.....+|.+.++ .. +|+|||||+.+  |.+     
T Consensus        16 ~p~i~lft~~------~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~-~~-VPvl~idg~~~~~g~~-----   82 (100)
T d1wjka_          16 LPVLTLFTKA------PCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYK-FD-IPVFHLNGQFLMMHRV-----   82 (100)
T ss_dssp             CCEEEEEECS------SCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSS-SS-CSEEEESSSEEEESSC-----
T ss_pred             CCEEEEEECC------CCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhc-cc-CCceeecCceEEeCCC-----
Confidence            3579999987      699999999999999999877777666666678888887 44 99999999764  223     


Q ss_pred             hhhcCchhHHhhcCCCC
Q 047313          101 LHEQGKLKKLLEGIPRN  117 (174)
Q Consensus       101 l~e~G~L~~~L~~~~~~  117 (174)
                        +..+|+++|+++...
T Consensus        83 --d~~~L~~~L~~l~~~   97 (100)
T d1wjka_          83 --NTSKLEKQLRKLSGP   97 (100)
T ss_dssp             --CHHHHHHHHHSSSCS
T ss_pred             --CHHHHHHHHHHHhcC
Confidence              334778888776544

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.98  E-value=1.2e-09  Score=72.74  Aligned_cols=74  Identities=14%  Similarity=0.107  Sum_probs=53.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLHE  103 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~e  103 (174)
                      .|+|||++      +|+.|..|+++|.. .++.|+++||+.|++++    +++|  ..+|+|.++|..+-+     .-.+
T Consensus         1 altLyt~~------~C~LCe~A~~~l~~~~~~~~~~vdI~~d~~l~----~~y~--~~IPVl~~~~~~~l~-----w~fd   63 (75)
T d1ttza_           1 ALTLYQRD------DCHLCDQAVEALAQARAGAFFSVFIDDDAALE----SAYG--LRVPVLRDPMGRELD-----WPFD   63 (75)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHTTCCCEEEEECTTCHHHH----HHHT--TTCSEEECTTCCEEE-----SCCC
T ss_pred             CEEEECCC------CccHHHHHHHHHHhccCCcEEEEEccCCHHHH----HHhC--CeeeEEEECCeeEEc-----CccC
Confidence            38999997      89999999998755 68999999999987644    4444  458999997644322     1123


Q ss_pred             cCchhHHhhcCC
Q 047313          104 QGKLKKLLEGIP  115 (174)
Q Consensus       104 ~G~L~~~L~~~~  115 (174)
                      ..+|+++|...|
T Consensus        64 ~~~l~~~L~~~~   75 (75)
T d1ttza_          64 APRLRAWLDAAP   75 (75)
T ss_dssp             HHHHHHHHHTCC
T ss_pred             HHHHHHHHhcCC
Confidence            346777776543

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.2e-07  Score=62.31  Aligned_cols=68  Identities=12%  Similarity=0.112  Sum_probs=55.9

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhhhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGLHE  103 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l~e  103 (174)
                      .||+..      .||+|.+|+.+|..+|++|+.+++..+.  .+++.++.+ ..++|++.. ||+.|.....+.+..+
T Consensus         2 kLY~~~------~cP~~~rvr~~l~~kgi~~e~~~~~~~~--~~~~~~~~p-~~~VP~L~~~dg~~i~eS~~I~~yLd   70 (75)
T d1g7oa2           2 KLYIYD------HCPYCLKARMIFGLKNIPVELHVLLNDD--AETPTRMVG-QKQVPILQKDDSRYMPESMDIVHYVD   70 (75)
T ss_dssp             EEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTT--THHHHHHHS-SSCCCEEEETTTEEEECHHHHHHHHH
T ss_pred             EEEccC------CCCchHHHHHHHHHhCCCcccccccccc--hHHHHHhCC-CCceEEEEEcCCCEEecHHHHHHHHH
Confidence            478876      7999999999999999999999986553  356777777 899999997 6799988777766543

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.40  E-value=6.5e-07  Score=61.04  Aligned_cols=61  Identities=15%  Similarity=0.234  Sum_probs=49.1

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEe
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIG   93 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IG   93 (174)
                      ++-.|++|+++      .|++|..+..+|+..     .|.+..+|+..+++..+    .+| -.++|.+|+||+.++
T Consensus        15 ~~~~i~~F~s~------~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~l~~----~~~-I~~vPt~~~ng~~~~   80 (96)
T d1hyua4          15 GDFEFETYYSL------SCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQNEIT----ERN-VMGVPAVFVNGKEFG   80 (96)
T ss_dssp             SCEEEEEEECT------TCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHHHHH----HTT-CCSSSEEEETTEEEE
T ss_pred             CCeEEEEEECC------CCcchHHHHHHHHHHHHhCCceEEEEEecccchHHHh----hcc-cccccEEEECCEEEE
Confidence            44578889987      599999999999753     57899999988876443    445 788999999999875

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.32  E-value=9.2e-07  Score=59.24  Aligned_cols=75  Identities=16%  Similarity=0.108  Sum_probs=58.4

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .+++++||+..      .||+|++|+.+|..+|++|+.+.|..... .+++.++......+|.+..||..|-....+.+.
T Consensus         2 ~~~~l~Ly~~~------~Sp~~~rvr~~L~~kgi~~e~~~v~~~~~-~~~~~~~nP~~g~vP~L~~~g~~l~eS~~I~~Y   74 (84)
T d1oyja2           2 EEKELVLLDFW------VSPFGQRCRIAMAEKGLEFEYREEDLGNK-SDLLLRSNPVHRKIPVLLHAGRPVSESLVILQY   74 (84)
T ss_dssp             CSCCEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHSTTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             CCCceEEEcCC------CChHHHHHHHHHHHcCCCcEEEEEccCcC-CHHHHhhCCCcCcccEEEECCceEEcHHHHHHH
Confidence            45789999875      79999999999999999999998865322 345666654246899999999988777776655


Q ss_pred             hh
Q 047313          102 HE  103 (174)
Q Consensus       102 ~e  103 (174)
                      .+
T Consensus        75 L~   76 (84)
T d1oyja2          75 LD   76 (84)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=98.30  E-value=8.4e-07  Score=58.62  Aligned_cols=72  Identities=11%  Similarity=0.055  Sum_probs=56.1

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      +.+.||+..      .||+|++|+.+|..+|++|+.+.+..... .+++.++......+|.+..+|..|.....+.+..
T Consensus         2 ~~mkLy~~~------~sp~~~rvr~~l~~kgi~~e~~~v~~~~~-~~~~~~~~~~~~~~p~l~~dg~~i~eS~~I~~YL   73 (83)
T d1gwca2           2 DDLKLLGAW------PSPFVTRVKLALALKGLSYEDVEEDLYKK-SELLLKSNPVHKKIPVLIHNGAPVCESMIILQYI   73 (83)
T ss_dssp             CCEEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CeEEEEecC------CChHHHHHHHHHHHCCCCeEEEEEeccch-hHHHHHHHhccCCCceeecCCceEcCHHHHHHHH
Confidence            358899986      79999999999999999999999864322 2345555553567899999999998777766553

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=7e-07  Score=61.46  Aligned_cols=75  Identities=15%  Similarity=0.107  Sum_probs=58.0

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchh
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEV   98 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del   98 (174)
                      |..+++++||+..      .||+|++|+.+|..+||+|+.+.|.... ..+++.++.. ..++|.+..+ |..|.....+
T Consensus        14 ~~~~~~~~Ly~~~------~sP~~~rv~~~l~~kgi~~e~~~v~~~~-~~~~~~~~nP-~g~VPvL~~~dg~~i~eS~aI   85 (98)
T d1eema2          14 PVPEGSIRIYSMR------FCPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNP-FGLVPVLENSQGQLIYESAIT   85 (98)
T ss_dssp             CCCTTCEEEEECT------TCHHHHHHHHHHHHTTCCEEEEEBCTTS-CCGGGGGTCT-TCCSCEEEETTCCEEESHHHH
T ss_pred             CCCCCcEEEEcCC------CChHHHHHHHHHHHhCCCCEEEEecccC-CcHHHHhhhc-cccceeEEeCCCCEEcCHHHH
Confidence            5667899999987      6999999999999999999988885432 2345666655 7799999884 6788776666


Q ss_pred             hhhh
Q 047313           99 VGLH  102 (174)
Q Consensus        99 ~~l~  102 (174)
                      .+..
T Consensus        86 ~~YL   89 (98)
T d1eema2          86 CEYL   89 (98)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.22  E-value=2e-06  Score=56.81  Aligned_cols=71  Identities=13%  Similarity=0.056  Sum_probs=55.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      ++.||...      .|++|.+++.+|+.+|++|+.+.|..  ......++.++.. ..++|.+..+|..+.....+.+..
T Consensus         1 ~m~Ly~~~------~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~p-~~~vPvL~~~~~~l~eS~aI~~yL   73 (80)
T d1e6ba2           1 KLKLYSYW------RSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINP-MGTVPALVDGDVVINDSFAIIMYL   73 (80)
T ss_dssp             CCEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCT-TCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CEEEEeCC------CChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcCc-cccCCEEEECCEEEECHHHHHHHH
Confidence            57899876      78999999999999999999888753  3444456666655 789999999999887766665543

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=98.20  E-value=4.4e-06  Score=55.36  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=56.3

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL-HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~-~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +.+|..+      .+++|++|+.+|+.+|++|+.+.|.. ..+.++++.++.. ..++|.+..+|..|-....+.+.
T Consensus         1 m~LY~~~------~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP-~g~VP~L~~~g~~l~eS~aI~~Y   70 (83)
T d1v2aa2           1 MDYYYSL------ISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNP-QHTIPTLVDNGHVVWESYAIVLY   70 (83)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCT-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEECCC------CChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHhh-ccCCCEEEEccceeEcHHHHHHH
Confidence            3689887      68999999999999999999998863 4556778887765 78999999999988776666554

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.9e-06  Score=56.32  Aligned_cols=77  Identities=12%  Similarity=0.009  Sum_probs=58.0

Q ss_pred             cEEEEEeecCC--CCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhhh
Q 047313           25 SVIFYTTSLRG--IRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGLH  102 (174)
Q Consensus        25 ~VvlYttsl~~--ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l~  102 (174)
                      .+.+|.++-+.  ....||+|++++.+|..+||+|+.+.|.... ..+++.++.. ...+|.|..||..|.....+.+..
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~nP-~~~vPvL~~~~~~i~eS~~I~~YL   79 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLCP-GGELPFLLYGTEVHTDTNKIEEFL   79 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHCT-TCCSSEEEETTEEEECHHHHHHHH
T ss_pred             cEEEEEecCCCcCcCCCCHhHHHHHHHHHHHCCCcEEEEeeccc-ccHHHHHHhc-cCceeEEEEcccccccHHHHHHHH
Confidence            47888666321  1136999999999999999999888876532 2356777776 789999999999988877766554


Q ss_pred             h
Q 047313          103 E  103 (174)
Q Consensus       103 e  103 (174)
                      +
T Consensus        80 e   80 (86)
T d1k0ma2          80 E   80 (86)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=98.03  E-value=2.3e-06  Score=60.00  Aligned_cols=69  Identities=14%  Similarity=0.232  Sum_probs=52.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC----CEEEeccchhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK----GRYIGGADEVVG  100 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~----G~~IGG~del~~  100 (174)
                      +++||+..      +||+|.+|+.+|..+|++|+.+++.....  +++ ...+ ..++|++.+.    |+.|+....+.+
T Consensus         2 ~i~LY~~~------~sP~~~kvr~~L~~k~l~~~~~~v~~~~~--~~~-~~~~-~~~vP~l~~~~~~~g~~i~eS~~Ii~   71 (113)
T d1z9ha2           2 QLTLYQYK------TCPFCSKVRAFLDFHALPYQVVEVNPVLR--AEI-KFSS-YRKVPILVAQEGESSQQLNDSSVIIS   71 (113)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTC--GGG-TTCS-CCSSCEEEEEETTEEEEECSHHHHHH
T ss_pred             EEEEEcCC------CChHHHHHHHHHHHcCCeeEEeccCcccc--hhh-ccCc-cccccccccccCCCceEeecHHHHHH
Confidence            58999986      79999999999999999999999864322  222 3344 7899998753    478888888766


Q ss_pred             hhh
Q 047313          101 LHE  103 (174)
Q Consensus       101 l~e  103 (174)
                      ..+
T Consensus        72 YL~   74 (113)
T d1z9ha2          72 ALK   74 (113)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.90  E-value=2.5e-05  Score=52.65  Aligned_cols=72  Identities=8%  Similarity=0.052  Sum_probs=54.5

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEE---CCEEEeccch
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFI---KGRYIGGADE   97 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI---~G~~IGG~de   97 (174)
                      ...++||+..      .||+|.+|+.+|+.+|++|+.+.|...  .....++.+... ..++|.+.+   +|..|.....
T Consensus         3 ~~~~tLY~~~------~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~np-~g~vP~L~d~~~~~~~l~ES~a   75 (92)
T d1k0da2           3 LEGYTLFSHR------SAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNP-NARVPALIDHGMDNLSIWESGA   75 (92)
T ss_dssp             SSSEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCT-TCCSCEEEEGGGTTEEEESHHH
T ss_pred             CCceEEeeCC------CCccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHhh-ccccceeEEecccceEEcCHHH
Confidence            3569999987      799999999999999999998887643  233456666655 789999987   7777755554


Q ss_pred             hhhh
Q 047313           98 VVGL  101 (174)
Q Consensus        98 l~~l  101 (174)
                      +.+.
T Consensus        76 I~~Y   79 (92)
T d1k0da2          76 ILLH   79 (92)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=97.86  E-value=4.6e-06  Score=55.04  Aligned_cols=70  Identities=10%  Similarity=0.024  Sum_probs=54.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++.||..+      .|++|.+++.+|..+|++|+.+.|...  .....++.+... ..++|.+..+|..|.....+.+.
T Consensus         2 pm~Ly~~~------~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~~~l~eS~aI~~Y   73 (81)
T d1aw9a2           2 PLKLYGMP------LSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNP-FGQIPALVDGDEVLFESRAINRY   73 (81)
T ss_dssp             CEEEESCT------TCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCT-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEeCC------CChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHhh-cCeeEEEEECCcEEECHHHHHHH
Confidence            37899886      689999999999999999999887532  233445666554 77999999999988766665544

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=97.85  E-value=3.2e-05  Score=51.37  Aligned_cols=70  Identities=10%  Similarity=0.194  Sum_probs=55.4

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .+|||..+      .+++|++|+.+|+.+|++|+.+.|..  ......++.++.- ..++|.+..||..|.....+.+.
T Consensus         1 t~iLY~~~------~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~~~l~ES~aI~~Y   72 (85)
T d1r5aa2           1 TTVLYYLP------ASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNP-QHCIPTMDDHGLVLWESRVILSY   72 (85)
T ss_dssp             CEEEEECT------TCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCT-TCCSSEEEETTEEEECHHHHHHH
T ss_pred             CEEEEcCC------CCHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHHh-cCCCCEEEEcccceecHHHHHHH
Confidence            37899997      68999999999999999999888753  3445667777765 77899999999887666555444

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=3.3e-05  Score=51.03  Aligned_cols=70  Identities=16%  Similarity=0.152  Sum_probs=54.2

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC----HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH----MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~----~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      -|||+-.      .+++|.+++.+|..+|++|+.+.|...    .....++.++.. ..++|.+..||..|.....+.+.
T Consensus         2 piLY~~~------~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP-~g~vP~L~~~g~~i~eS~aI~~y   74 (83)
T d1fw1a2           2 PILYSYF------RSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNP-MKQVPTLKIDGITIHQSLAIIEY   74 (83)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCT-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEcCC------CChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhcc-CCccCEEEECCEEEecHHHHHHH
Confidence            4799876      689999999999999999988876432    234466777765 78999999999988776666554


Q ss_pred             h
Q 047313          102 H  102 (174)
Q Consensus       102 ~  102 (174)
                      .
T Consensus        75 L   75 (83)
T d1fw1a2          75 L   75 (83)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=97.78  E-value=2.4e-05  Score=51.44  Aligned_cols=70  Identities=9%  Similarity=-0.048  Sum_probs=54.8

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      .+.||+..      +++++.+++.+|+.+|++|+.++|...  .....++.++.. ...+|.+..+|..+.....+.+.
T Consensus         2 p~~Ly~~~------~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~VP~L~~~~~~l~ES~aI~~Y   73 (80)
T d1axda2           2 PMKLYGAV------MSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNP-FGQVPALQDGDLYLFESRAICKY   73 (80)
T ss_dssp             CEEEESCT------TCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCT-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEEECC------CChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhhc-cccCCEEEECCEEEECHHHHHHH
Confidence            48899987      689999999999999999999887543  334556777665 77999999999877666555444

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.8e-05  Score=49.45  Aligned_cols=69  Identities=12%  Similarity=0.043  Sum_probs=53.8

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +.||..+      .+++|++|+.+|+.+|++|+.+.|...  .....++.+... ...+|.+..+|..|-....+.+.
T Consensus         3 m~LY~~~------~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~np-~g~vP~L~d~~~~l~ES~aI~~y   73 (79)
T d1ljra2           3 LELFLDL------VSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINS-LGKLPTLKDGDFILTESSAILIY   73 (79)
T ss_dssp             CEEEECT------TSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCT-TCCSCEEEETTEEEECHHHHHHH
T ss_pred             EEEeeCC------CChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhhh-hcceeEEEeCCcEEEcHHHHHHH
Confidence            6789887      689999999999999999998887543  334566776665 78999999999887666555443

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.60  E-value=3.8e-05  Score=50.83  Aligned_cols=69  Identities=10%  Similarity=0.020  Sum_probs=52.5

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +.||+..      .+++|++|+.+|+.+|++|+.+.|...  +...+++.++.. ..++|.+..+|..|.....+.+.
T Consensus         2 ~kLY~~~------~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~~~~~~l~ES~aI~~Y   72 (84)
T d1gnwa2           2 IKVFGHP------ASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNP-FGQVPAFEDGDLKLFESRAITQY   72 (84)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCT-TCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeCC------CChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHhh-cCcceEEEECCcEEecHHHHHHH
Confidence            6789986      689999999999999999998887532  233455666654 67899999999877655554433

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=97.55  E-value=3.5e-05  Score=53.97  Aligned_cols=45  Identities=29%  Similarity=0.446  Sum_probs=37.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      |+||+.+      .|..|++|+++|+++|++|+.+|+..++--.++|.++.
T Consensus         2 i~ly~~~------~C~~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll   46 (114)
T d1z3ea1           2 VTLYTSP------SCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQIL   46 (114)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             EEEEcCC------CCHHHHHHHHHHHHCCCCeEEEeeeccCCCHHHHHHHH
Confidence            6799987      89999999999999999999999987654444554443

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=97.52  E-value=0.00014  Score=47.99  Aligned_cols=69  Identities=14%  Similarity=0.185  Sum_probs=52.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +.+|..+      .+++|++|+.+|..+|++|+.+.|..  ......++.++.. ..++|.+..+|..|-....+.+.
T Consensus         1 mkLY~~~------~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP-~g~vP~L~d~~~~l~ES~aI~~y   71 (84)
T d1jlva2           1 MDFYYLP------GSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINP-QHCIPTLVDNGFALWESRAICTY   71 (84)
T ss_dssp             CEEEECT------TCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCT-TCCSCEEEETTEEEESHHHHHHH
T ss_pred             CEEEcCC------CCHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHhc-cccCCEEEECCEEEEcHHHHHHH
Confidence            3588876      68999999999999999999988853  2334456777765 78999999888877555554433

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.49  E-value=5e-05  Score=49.84  Aligned_cols=59  Identities=17%  Similarity=0.313  Sum_probs=45.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE--EEec
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR--YIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~--~IGG   94 (174)
                      +|++|+++|      |++|.++..+|+.    +  .+.+..+|+..+++    +.+.+| -..+|.++++|+  ++|.
T Consensus         4 ~v~~F~a~w------C~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~-V~~~Pt~~~~~~~~~~G~   70 (85)
T d1nhoa_           4 NIEVFTSPT------CPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYG-LMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CEEEESCSS------SCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTC-SSCSSEEEETTTEEEECS
T ss_pred             EEEEEECCC------CcchHHHHHHHhhhcccccccccccccccccchh----hHHhcC-ceEeCEEEECCcEEEEcC
Confidence            578899984      9999999988875    2  37788899877665    444556 788999999874  4554

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.41  E-value=2.4e-05  Score=54.77  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=31.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL   64 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~   64 (174)
                      .++||+.+      .|.-|++++++|+.+||+|+++|+..
T Consensus         1 t~~iY~~p------~Cs~srka~~~L~~~~i~~~~idy~k   34 (114)
T d1rw1a_           1 TYVLYGIK------ACDTMKKARTWLDEHKVAYDFHDYKA   34 (114)
T ss_dssp             CEEEEECS------SCHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CEEEEECC------CChHHHHHHHHHHHcCCCeEEEEccc
Confidence            48999997      89999999999999999999999854

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.00046  Score=44.28  Aligned_cols=70  Identities=13%  Similarity=0.070  Sum_probs=51.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ++++|.-++      ...|+.+|.+|...|++|+++.+........+.....- ..++|.|..||..|.....+.+.
T Consensus         2 ~~~L~yf~~------~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~p-~g~vP~L~~~g~~i~eS~aI~~y   71 (77)
T d2a2ra2           2 PYTVVYFPV------RGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCL-YGQLPKFQDGDLTLYQSNTILRH   71 (77)
T ss_dssp             SEEEEECSS------SGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHST-TSCSCEEEETTEEEECHHHHHHH
T ss_pred             CEEEEEcCC------chhHHHHHHHHHHcCCCcEEEEecccccccccccccCC-CCCCCEEEECCEeeecHHHHHHH
Confidence            467777663      57899999999999999999999755443333333332 56899999999988766655443

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.06  E-value=0.0012  Score=44.28  Aligned_cols=58  Identities=16%  Similarity=0.154  Sum_probs=40.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC----------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF----------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~----------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~I   92 (174)
                      .|++|+++      .|++|.+++.+|+..          .|.+..+|+..+++    +.+.++ -..+|++++  +|+.+
T Consensus        18 ~i~~F~a~------wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~----l~~~~~-V~~vPTi~i~~~G~~~   86 (107)
T d1a8la2          18 RILVFVTP------TCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQYN-VMAVPKIVIQVNGEDR   86 (107)
T ss_dssp             EEEEEECS------SCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHTT-CCSSCEEEEEETTEEE
T ss_pred             EEEEEEcC------ccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc----cccccc-cccceEEEEEeCCeEE
Confidence            34458887      499999999888643          46778888877665    445556 778898865  67644


Q ss_pred             e
Q 047313           93 G   93 (174)
Q Consensus        93 G   93 (174)
                      +
T Consensus        87 ~   87 (107)
T d1a8la2          87 V   87 (107)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.0015  Score=41.67  Aligned_cols=67  Identities=12%  Similarity=0.122  Sum_probs=50.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      ++.||.-+      ..+.|+.+|.+|...||+|+++.+..+.  ..++++... ..++|.+.+||..|.....+.+
T Consensus         2 ~~kL~yf~------~~~~~~~vRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p-~g~vP~L~~~g~~l~qS~AI~~   68 (74)
T d2cvda2           2 NYKLTYFN------MRGRAEIIRYIFAYLDIQYEDHRIEQAD--WPEIKSTLP-FGKIPILEVDGLTLHQSLAIAR   68 (74)
T ss_dssp             CEEEEEES------SSGGGHHHHHHHHHTTCCCEEEEECGGG--HHHHHTTST-TSCSCEEEETTEEEECHHHHHH
T ss_pred             cEEEEEcC------CcHHHHHHHHHHHHcCCCCEeccccccc--chhhcccCC-CCCcCEEEECCEEEEcHHHHHH
Confidence            46777776      4589999999999999999999986543  344555444 6789999999988766555543

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00021  Score=51.55  Aligned_cols=35  Identities=6%  Similarity=-0.047  Sum_probs=32.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH   65 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~   65 (174)
                      .|+||+.+      .|..|++|.++|++++++|+.+|+..+
T Consensus         1 ni~iY~~p------~Cs~srkal~~L~~~~i~~~~idy~k~   35 (138)
T d1j9ba_           1 NITIYHNP------ACGTSRNTLEMIRNSGTEPTIILYLEN   35 (138)
T ss_dssp             CCEEECCT------TCHHHHHHHHHHHHTTCCCEEECTTTS
T ss_pred             CeEEEECC------CCHHHHHHHHHHHHCCCCeEEEeeccC
Confidence            47899987      899999999999999999999999765

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=96.82  E-value=0.0057  Score=40.85  Aligned_cols=59  Identities=8%  Similarity=0.190  Sum_probs=42.4

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCEEEecc
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGRYIGGA   95 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~~IGG~   95 (174)
                      +|.|+++      .|+.|.++...|+.    +  .+.+..+|+..++.+    .+.++ -..+|.+++  +|+.++-+
T Consensus        24 lv~f~a~------wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l----~~~~~-I~~~Pt~~~~~~g~~v~~~   90 (108)
T d1thxa_          24 LVYFWAS------WCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTT----VKKYK-VEGVPALRLVKGEQILDST   90 (108)
T ss_dssp             EEEEECT------TCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHH----HHHTT-CCSSSEEEEEETTEEEEEE
T ss_pred             EEEEECC------CCCCccccchHHHHHHHhcCCcceeceecccccHHH----HHHhc-ccCCCEEEEEECCEEEEEE
Confidence            4446665      59999999998865    2  367889999887764    34455 788998865  88765444

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.80  E-value=0.0029  Score=43.27  Aligned_cols=57  Identities=23%  Similarity=0.341  Sum_probs=42.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEe
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIG   93 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IG   93 (174)
                      ||.|+++|      |+.|..++..|++     .++.|..+|++.++++    .+..| -..+|.+  |-+|+.+.
T Consensus        30 vv~F~a~w------C~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~l----~~~~~-V~~~Pt~~~~~~G~~v~   93 (113)
T d1r26a_          30 VAWFTAVW------CGPCKTIERPMEKIAYEFPTVKFAKVDADNNSEI----VSKCR-VLQLPTFIIARSGKMLG   93 (113)
T ss_dssp             EEEEECTT------CHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTT-CCSSSEEEEEETTEEEE
T ss_pred             EEEEECCC------Cccchhhceeccccccccccccccccccccchhh----HHHcc-ccCCCEEEEEECCEEEE
Confidence            44466665      9999999988876     3788999999887764    44445 7788887  45886553

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=96.77  E-value=0.0031  Score=40.31  Aligned_cols=69  Identities=12%  Similarity=-0.001  Sum_probs=46.6

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      .++|.-+.      -..++.+|.+|...|++|+.+.+...+.....-........++|.+.+||..|.....+.+
T Consensus         2 pkL~yf~~------~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~   70 (77)
T d1gula2           2 PKLHYPNG------RGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILH   70 (77)
T ss_dssp             CEEEEESS------CTTTHHHHHHHHHTTCCCEEEEECSHHHHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHH
T ss_pred             CEEEEcCC------cchHHHHHHHHHHcCCCceEEeeccccccchhhhcccCCCCCCCEEEECCEeeecHHHHHH
Confidence            45666653      4789999999999999999888865443332211111124679999999987765554433

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=96.54  E-value=0.0012  Score=42.46  Aligned_cols=70  Identities=16%  Similarity=0.133  Sum_probs=48.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHh-cCCCCCCcEEEECCEEEeccchhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSS-LSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~-~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      .|.++|.-+.      -..++.+|.+|...||+|+.+.+........ .... .....++|.+.+||..|...-.+.+
T Consensus         2 ~K~kL~yf~~------~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~~-~~~~~~~p~g~lPvL~~~g~~l~eS~AI~r   72 (78)
T d1b48a2           2 AKPKLYYFNG------RGRMESIRWLLAAAGVEFEEEFLETREQYEK-MQKDGHLLFGQVPLVEIDGMMLTQTRAILS   72 (78)
T ss_dssp             CCCEEEBCSS------CTTTHHHHHHHHHHTCCCCCCBCCCHHHHHH-HHTTTCSSSSCSCEEEETTEEECCHHHHHH
T ss_pred             CCcEEEEcCC------chHHHHHHHHHHHcCCCcEEEEEcchhhhcc-hhhcccccCCCCCEEEeCCeEEECHHHHHH
Confidence            4567777663      4789999999999999999988865443322 2222 1114579999999987765544433

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.51  E-value=0.0042  Score=40.41  Aligned_cols=55  Identities=15%  Similarity=0.248  Sum_probs=41.4

Q ss_pred             cEEEEEeecCCCCCCChhHHH----HHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRT----IRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~----vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~I   92 (174)
                      +|.|+++       +|+.|.+    +++++.++|+..+..+|+.    ..++.+ +| --++|.|.|||+.+
T Consensus         3 ~IkVlg~-------gC~~C~~~~~~v~~a~~e~gi~a~v~kv~d----~~ei~~-yg-VmstPalvIdg~vv   61 (77)
T d1iloa_           3 KIQIYGT-------GCANCQMLEKNAREAVKELGIDAEFEKIKE----MDQILE-AG-LTALPGLAVDGELK   61 (77)
T ss_dssp             EEEEECS-------SSSTTHHHHHHHHHHHHHTTCCEEEEEECS----HHHHHH-HT-CSSSSCEEETTEEE
T ss_pred             EEEEeCC-------CCccHHHHHHHHHHHHHHcCCceEEEEeCC----HHHHHH-cC-CcCCCEEEECCEEE
Confidence            4667754       6999985    5555788999999989954    233444 46 88999999999875

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0063  Score=40.63  Aligned_cols=61  Identities=23%  Similarity=0.414  Sum_probs=43.6

Q ss_pred             CcEEE-EEeecCCCCCCChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEecc
Q 047313           24 DSVIF-YTTSLRGIRKTFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGA   95 (174)
Q Consensus        24 ~~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~   95 (174)
                      ..|+| |+++|      |+.|..+...|+..     ++.|..+|+..+++..+    ..+ -..+|.+  |-+|+.++-+
T Consensus        21 k~vvv~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~~~----~~~-V~~~Pt~~~~~~G~~v~~~   89 (105)
T d2ifqa1          21 KLVVVDFSATW------CGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVAS----ECE-VKCMPTFQFFKKGQKVGEF   89 (105)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHHHH----HTT-CCBSSEEEEEETTEEEEEE
T ss_pred             CEEEEEEEcCC------ccchhhhhhhhhhhccccccceeeecccccCHhHHH----HcC-ceEEEEEEEEECCEEEEEE
Confidence            34555 66664      99999999888652     56688999988876543    445 7889988  4589876543

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.00064  Score=44.35  Aligned_cols=52  Identities=25%  Similarity=0.531  Sum_probs=37.9

Q ss_pred             CCCCCCCCCcc------eEeCCCCCCCeeeeecCCCCCCccccccCcccccCccc---cCCCCC
Q 047313          120 DCSCNGCGNIR------FVLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLV---KCPFCS  174 (174)
Q Consensus       120 ~~~C~~Cgg~r------~v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~---~C~~C~  174 (174)
                      ...|..|.|.+      ...|+.|+|+.++.....+-   .....|+.|+=.|.+   +|+.|.
T Consensus        11 ~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~---~~~~~C~~C~G~G~~i~~~C~~C~   71 (79)
T d1exka_          11 LEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFF---AVQQTCPHCQGRGTLIKDPCNKCH   71 (79)
T ss_dssp             EEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTE---EEEEECTTTTTSSEECSSBCGGGT
T ss_pred             eccCCCCcCcccCCCccceeCCCccceeEEEEecccc---eeeEECcccCcceeECCCCCCCCC
Confidence            45688888875      47799999998876544431   235679999998865   788773

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.45  E-value=0.0099  Score=39.37  Aligned_cols=75  Identities=20%  Similarity=0.252  Sum_probs=50.7

Q ss_pred             cEEE-EEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313           25 SVIF-YTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD   96 (174)
Q Consensus        25 ~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d   96 (174)
                      .|+| |+++      .|+.|..+...|+.     .++.|..+|+..+++.    .+.++ -..+|.+  |.+|+.++.+.
T Consensus        20 ~vvv~F~a~------wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~~----~~~~~-V~~~Pt~i~~k~G~~v~~~~   88 (103)
T d1syra_          20 LVIVDFFAE------WCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEV----TEKEN-ITSMPTFKVYKNGSSVDTLL   88 (103)
T ss_dssp             EEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHHH----HHHTT-CCSSSEEEEEETTEEEEEEE
T ss_pred             cEEEEEeCC------cccCcccccccchhhhhcccceEEEeeccccCcce----eeeee-eecceEEEEEECCEEEEEEe
Confidence            4444 5555      59999999888865     3667899999877654    44556 7889986  56998765443


Q ss_pred             hhhhhhhcCchhHHhhcC
Q 047313           97 EVVGLHEQGKLKKLLEGI  114 (174)
Q Consensus        97 el~~l~e~G~L~~~L~~~  114 (174)
                      -.    ...+|.++|++.
T Consensus        89 G~----~~~~l~~~i~k~  102 (103)
T d1syra_          89 GA----NDSALKQLIEKY  102 (103)
T ss_dssp             SC----CHHHHHHHHHTT
T ss_pred             Cc----CHHHHHHHHHhh
Confidence            32    123577777653

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=96.43  E-value=0.0054  Score=39.06  Aligned_cols=68  Identities=18%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +.+||.-++      -..++.+|.+|...||+|+.+.+..+..  .+++.... ..++|.+.+||..|.....+.+.
T Consensus         2 ~~~L~yf~~------~g~~~~iRl~L~~~gi~ye~~~~~~~~~--~~~~~~~p-~g~lPvL~~~g~~i~eS~aI~~y   69 (75)
T d2gsqa2           2 KYTLHYFPL------MGRAELCRFVLAAHGEEFTDRVVEMADW--PNLKATMY-SNAMPVLDIDGTKMSQSMCIARH   69 (75)
T ss_dssp             CEEEEECSS------SGGGHHHHHHHHHTTCCCEEEECCTTTH--HHHGGGSG-GGSSCEEEETTEEECCHHHHHHH
T ss_pred             CEEEEecCC------chhHHHHHHHHHHcCCCchhhccccccc--hhhhhccc-cCCcCEEEECCeeeecHHHHHHH
Confidence            467777764      3789999999999999999999876543  34444443 56899999999887666555443

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.0008  Score=43.37  Aligned_cols=53  Identities=21%  Similarity=0.555  Sum_probs=36.1

Q ss_pred             CCCCCCCcce-----EeCCCCCCCeeeeecCCCCCC-ccccccCcccccCccc-----cCCCCC
Q 047313          122 SCNGCGNIRF-----VLCSNCSGSCKVFRDGDDDDD-DELHIRCPECNENGLV-----KCPFCS  174 (174)
Q Consensus       122 ~C~~Cgg~r~-----v~C~~C~Gs~k~~~~~~~~~~-~~~~~rC~~CnenGl~-----~C~~C~  174 (174)
                      .|..|.|.+.     ..|+.|+|+.+++........ ......|+.|+-.|.+     +|+.|.
T Consensus         4 ~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~   67 (74)
T d1nlta3           4 LCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCN   67 (74)
T ss_dssp             ECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSST
T ss_pred             CCcCCcccccCCCCCCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCC
Confidence            5888888884     459999999777643221111 1135689999999965     699884

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.0088  Score=40.33  Aligned_cols=59  Identities=19%  Similarity=0.167  Sum_probs=42.9

Q ss_pred             EEE-EEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEecc
Q 047313           26 VIF-YTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGA   95 (174)
Q Consensus        26 Vvl-Yttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~   95 (174)
                      |+| |+++|      |+.|.++...|+.     .++.|..+|+..+++..    +..+ -..+|.+  |-+|+.++..
T Consensus        24 vvv~F~a~w------C~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l~----~~~~-v~~~Pt~~~~~~G~~v~~~   90 (107)
T d1gh2a_          24 AVVKFTMRG------CGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTA----ATNN-ISATPTFQFFRNKVRIDQY   90 (107)
T ss_dssp             EEEEEECSS------CHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHHH----HHTT-CCSSSEEEEEETTEEEEEE
T ss_pred             EEEEEECCC------CCCccccchhhhccccccccccccccccccchhhh----hhcC-ceeceEEEEEECCEEEEEE
Confidence            444 67664      9999999888854     36789999998877654    4445 7788986  5699876544

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=96.37  E-value=0.0052  Score=41.70  Aligned_cols=74  Identities=23%  Similarity=0.329  Sum_probs=49.1

Q ss_pred             EEEEEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccch
Q 047313           26 VIFYTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGADE   97 (174)
Q Consensus        26 VvlYttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~de   97 (174)
                      ||.|+++      .|+.|..+...|+.    +  .+.|..+|+..++++.+    .++ -..+|.+  |-+|+.+..+.-
T Consensus        28 vv~f~a~------wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l~~----~~~-v~~~Pt~~~~~~G~~v~~~~G   96 (112)
T d1ep7a_          28 VVDFTAT------WCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAE----AAG-ITAMPTFHVYKDGVKADDLVG   96 (112)
T ss_dssp             EEEEECT------TCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHHHH----HHT-CCBSSEEEEEETTEEEEEEES
T ss_pred             EEEEEcC------CcCCCcccchhhhhhhhcccceEEEEEeeccccccccc----ccc-ccCCCEEEEEECCEEEEEEeC
Confidence            4445555      59999999988865    2  38899999988776544    345 7788886  458886644332


Q ss_pred             hhhhhhcCchhHHhhcC
Q 047313           98 VVGLHEQGKLKKLLEGI  114 (174)
Q Consensus        98 l~~l~e~G~L~~~L~~~  114 (174)
                      .    ...+|.++|+++
T Consensus        97 ~----~~~~l~~~i~k~  109 (112)
T d1ep7a_          97 A----SQDKLKALVAKH  109 (112)
T ss_dssp             C----CHHHHHHHHHHH
T ss_pred             c----CHHHHHHHHHHH
Confidence            1    123577777653

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=96.35  E-value=0.0073  Score=38.77  Aligned_cols=70  Identities=16%  Similarity=0.112  Sum_probs=47.8

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhc-CCCCCCcEEEECCEEEeccchhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSL-SGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~-g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      .|.+||.-+.      -..++.+|.+|...||+|+++.+...... ....... ....++|.+.+||..|...-.+.+
T Consensus         2 ~k~kL~Yf~~------~grae~irl~L~~~gv~yed~~~~~~~~~-~~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~   72 (79)
T d1k3ya2           2 EKPKLHYFNA------RGRMESTRWLLAAAGVEFEEKFIKSAEDL-DKLRNDGYLMFQQVPMVEIDGMKLVQTRAILN   72 (79)
T ss_dssp             CCCEEEEESS------STTTHHHHHHHHHHTCCCEEEEECSHHHH-HHHHHTTCCTTSCSCEEEETTEEEESHHHHHH
T ss_pred             CCcEEEEcCC------cHHHHHHHHHHHHcCCCceEEEecchhhh-hhhcccccCCCCCCCEEEECCeEEEcHHHHHH
Confidence            3556766554      37889999999999999999988754333 2222221 124689999999987765554443

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.28  E-value=0.014  Score=37.55  Aligned_cols=72  Identities=11%  Similarity=0.192  Sum_probs=49.2

Q ss_pred             CCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHH--H-HHHHHHh-cCCCCCCcEEEECCEEEeccchh
Q 047313           23 EDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHME--F-RDELWSS-LSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~--~-~~el~~~-~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      +.++++|.-+.      -..++.+|-+|...|++|+.+.+..+..  . ....... .....++|.|.++|..|.....+
T Consensus         2 ~~~i~L~Y~~~------~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI   75 (85)
T d1okta2           2 GDNIVLYYFDA------RGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAI   75 (85)
T ss_dssp             CCCEEEEEESS------STTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHH
T ss_pred             CCCeEEEEcCC------chhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEEecHHHH
Confidence            46899987664      3688999999999999999888765422  1 1222222 12256899999999887665554


Q ss_pred             hh
Q 047313           99 VG  100 (174)
Q Consensus        99 ~~  100 (174)
                      .+
T Consensus        76 ~~   77 (85)
T d1okta2          76 VR   77 (85)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=96.22  E-value=0.014  Score=39.30  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=46.7

Q ss_pred             EEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccchhhhh
Q 047313           29 YTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGADEVVGL  101 (174)
Q Consensus        29 Yttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~del~~l  101 (174)
                      |+++|      |+.|..+...|+.     .++.+..+|+..++++...+    + -..+|.+  |-+|+.++-....   
T Consensus        33 F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~~~----~-I~~~Pt~~~~k~G~~v~~~~G~---   98 (113)
T d1ti3a_          33 FTASW------CPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEEW----N-VEAMPTFIFLKDGKLVDKTVGA---   98 (113)
T ss_dssp             EECSS------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHHH----H-CSSTTEEEEEETTEEEEEEECC---
T ss_pred             EEcCc------cccchhhhhhhhhhhccCCCceEEeeeeeccccccccC----e-ecccceEEEEECCEEEEEEcCC---
Confidence            66664      9999998887764     35668889998887654433    4 6778887  5689765433221   


Q ss_pred             hhcCchhHHhhc
Q 047313          102 HEQGKLKKLLEG  113 (174)
Q Consensus       102 ~e~G~L~~~L~~  113 (174)
                       ...+|.++|++
T Consensus        99 -~~~~l~~~i~k  109 (113)
T d1ti3a_          99 -DKDGLPTLVAK  109 (113)
T ss_dssp             -CTTHHHHHHHH
T ss_pred             -CHHHHHHHHHH
Confidence             12357777654

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.01  Score=42.41  Aligned_cols=37  Identities=14%  Similarity=0.234  Sum_probs=24.3

Q ss_pred             CCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh---CCCcEEEEEC
Q 047313           20 PGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS---FKVTFYERDV   62 (174)
Q Consensus        20 ~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~---~~v~~~e~Dv   62 (174)
                      +..+..|++|+-.      .||+|+++...|+.   .++.+..+..
T Consensus        24 ~~ak~tIv~FsD~------~CpyC~~~~~~l~~~~~~~~~~~~~~~   63 (156)
T d1eeja1          24 PQEKHVITVFTDI------TCGYCHKLHEQMADYNALGITVRYLAF   63 (156)
T ss_dssp             TTCCEEEEEEECT------TCHHHHHHHTTHHHHHHTTEEEEEEEC
T ss_pred             CCCCEEEEEEeCC------CCHHHHHHHHHHHHhhccCceEEEEec
Confidence            3344467777765      89999998765543   4566666654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.05  E-value=0.013  Score=39.59  Aligned_cols=74  Identities=16%  Similarity=0.252  Sum_probs=47.9

Q ss_pred             cEEE-EEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccc
Q 047313           25 SVIF-YTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGAD   96 (174)
Q Consensus        25 ~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~d   96 (174)
                      .|+| |+++|      |+.|..+...|+.     .++.|..+|+..++++.+    .++ -..+|.+  |-+|+.+..+.
T Consensus        30 ~vlv~F~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~~----~~~-V~~~Pt~~~~~~G~~v~~~~   98 (114)
T d1xfla_          30 LVVVDFTASW------CGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVAS----DWA-IQAMPTFMFLKEGKILDKVV   98 (114)
T ss_dssp             EEEEEEECTT------CHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHHH----HTT-CCSSSEEEEEETTEEEEEEE
T ss_pred             eEEEEEEcCC------CCCccccccchhhhcccccccceeEEEeeeceeecc----ccc-eeeeEEEEEEECCEEEEEEe
Confidence            3444 66664      9999998888875     256788899988776543    345 7789987  45888764332


Q ss_pred             hhhhhhhcCchhHHhhc
Q 047313           97 EVVGLHEQGKLKKLLEG  113 (174)
Q Consensus        97 el~~l~e~G~L~~~L~~  113 (174)
                      -.    ...+|.++|++
T Consensus        99 G~----~~~~l~~~i~k  111 (114)
T d1xfla_          99 GA----KKDELQSTIAK  111 (114)
T ss_dssp             SC----CHHHHHHHHHH
T ss_pred             Cc----CHHHHHHHHHH
Confidence            21    12356665543

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=95.99  E-value=0.016  Score=38.26  Aligned_cols=59  Identities=24%  Similarity=0.308  Sum_probs=42.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEec
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGG   94 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG   94 (174)
                      -||.|+++      .|+.|..+...|+..      .+.+..+|+..++...    +.++ -..+|.+  |-+|+.++-
T Consensus        20 vvv~F~a~------wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~~----~~~~-V~~~Pt~~~~~~G~~~~~   86 (105)
T d1nw2a_          20 VLVDFWAA------WCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETT----SQFG-IMSIPTLILFKGGEPVKQ   86 (105)
T ss_dssp             EEEEEECT------TCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHHH----HHTT-CCBSSEEEEEETTEEEEE
T ss_pred             EEEEEECC------CCCCcccccchhhhhhhhcCCceEEEEEECCCCcccH----HHCC-cceeeEEEEEECCEEEEE
Confidence            34445555      599999998888752      5889999998877654    3445 7789988  458886643

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.97  E-value=0.033  Score=36.50  Aligned_cols=61  Identities=13%  Similarity=0.220  Sum_probs=41.7

Q ss_pred             CcEEE-EEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEec
Q 047313           24 DSVIF-YTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGG   94 (174)
Q Consensus        24 ~~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG   94 (174)
                      ..|+| |+++      -|+.|..+...|...      .+.+..+|+..++.    +.+.++ -..+|.+  |.+|+.++-
T Consensus        18 ~~vlv~F~a~------wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~----l~~~~~-V~~~Pt~~~~~~G~~v~~   86 (104)
T d1fb6a_          18 VPVMVDFWAP------WCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQYN-IRSIPTVLFFKNGERKES   86 (104)
T ss_dssp             SCEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTT-CCSSSEEEEEETTEEEEE
T ss_pred             CcEEEEEEcC------ccCCccccCchhHHHHHhhcCccceeEEecccchh----hhhhcc-eeeeeEEEEEEcCeEEEE
Confidence            44555 5665      499999998887652      34577788877765    444556 7889988  458876644


Q ss_pred             c
Q 047313           95 A   95 (174)
Q Consensus        95 ~   95 (174)
                      +
T Consensus        87 ~   87 (104)
T d1fb6a_          87 I   87 (104)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.94  E-value=0.052  Score=35.75  Aligned_cols=59  Identities=14%  Similarity=0.135  Sum_probs=40.9

Q ss_pred             CcEEE-EEeecCCCCCCChhHHHHHHHHHh------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEe
Q 047313           24 DSVIF-YTTSLRGIRKTFEDCRTIRFLLQS------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIG   93 (174)
Q Consensus        24 ~~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IG   93 (174)
                      ..|+| |+++|      |+.|.++...|..      ..+.+..+|+..+++.    .+..+ -..+|.++  -+|+.++
T Consensus        20 kpvlv~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~l----~~~~~-V~~~Pt~~~~~~G~~v~   87 (107)
T d1dbya_          20 VPVLVDFWAPW------CGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNV----ASEYG-IRSIPTIMVFKGGKKCE   87 (107)
T ss_dssp             SCEEEEEECTT------CHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHHT-CCSSCEEEEESSSSEEE
T ss_pred             CcEEEEEECCC------CCCccccChHHHHHHHhhcccceEEEEecccchhH----HHHhc-ccceEEEEEEECCeEEE
Confidence            34554 66664      9999999877654      2456888999877654    34455 78899884  4776554

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.85  E-value=0.018  Score=38.60  Aligned_cols=69  Identities=13%  Similarity=0.199  Sum_probs=44.6

Q ss_pred             EEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEeccchhhh
Q 047313           29 YTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGGADEVVG  100 (174)
Q Consensus        29 Yttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG~del~~  100 (174)
                      |+++|      |+.|..+...|+..      .+.+..+|+..+++    +.+..+ -..+|.++  -+|+.+..+.-.  
T Consensus        32 f~a~w------C~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~----l~~~~~-V~~~Pt~~~~~~G~~v~~~~G~--   98 (111)
T d1xwaa_          32 FFATW------CGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEYN-ISSMPTFVFLKNGVKVEEFAGA--   98 (111)
T ss_dssp             EECTT------CHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTT-CCSSSEEEEEETTEEEEEEESC--
T ss_pred             EECCc------ccCccccchhHHHHhhhcccceEEEEEEeecCcc----hhhcCC-CccccEEEEEECCEEEEEEeCC--
Confidence            77765      99999999888653      25567778777665    444556 77888874  488765444321  


Q ss_pred             hhhcCchhHHhh
Q 047313          101 LHEQGKLKKLLE  112 (174)
Q Consensus       101 l~e~G~L~~~L~  112 (174)
                        ...+|.++|+
T Consensus        99 --~~~~l~~~I~  108 (111)
T d1xwaa_          99 --NAKRLEDVIK  108 (111)
T ss_dssp             --CHHHHHHHHH
T ss_pred             --CHHHHHHHHH
Confidence              1124666665

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.65  E-value=0.012  Score=41.95  Aligned_cols=24  Identities=21%  Similarity=0.274  Sum_probs=18.2

Q ss_pred             HhcCCCCCCcEEEE-CCEEEeccchh
Q 047313           74 SSLSGRVIPPRLFI-KGRYIGGADEV   98 (174)
Q Consensus        74 ~~~g~~~~~P~vFI-~G~~IGG~del   98 (174)
                      +.+| -...|.+|+ ||+.|-|+-..
T Consensus       115 ~~lG-v~GTPt~~~~nG~~i~G~~~~  139 (150)
T d1t3ba1         115 IQFG-VRGTPSIVTSTGELIGGYLKP  139 (150)
T ss_dssp             HHHT-CCSSCEEECTTSCCCCSCCCH
T ss_pred             HhcC-cCCCCEEEEcCCcEecCCCCH
Confidence            3345 788999888 89999887544

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.64  E-value=0.0024  Score=40.94  Aligned_cols=55  Identities=13%  Similarity=0.240  Sum_probs=38.7

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh----CC--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS----FK--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGR   90 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~   90 (174)
                      .|++|+++|      |++|+.+...++.    ++  +.+..+|...+++    +.+..+ -..+|++++++.
T Consensus         5 ~v~~F~a~w------C~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~----la~~~~-V~~~Pt~~i~~~   65 (85)
T d1fo5a_           5 KIELFTSPM------CPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ----KAMEYG-IMAVPTIVINGD   65 (85)
T ss_dssp             EEEEEECCC------SSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC----TTTSTT-TCCSSEEEETTE
T ss_pred             EEEEEECCC------CcChHhhhhhcccccccccccccccccccccccc----ccccCC-ceEeeEEEEECC
Confidence            577788885      9999998887754    33  4566677765544    334455 788999988664

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.62  E-value=0.048  Score=36.58  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=47.0

Q ss_pred             hHhhhHhhCCCCCCCcEEEEEeecCCCCCCChhHHHHHHHHHh----CCCcEEEEECCC--CHHHHHHHHHhcCCCCCCc
Q 047313           10 FLKGYEEKCPPGGEDSVIFYTTSLRGIRKTFEDCRTIRFLLQS----FKVTFYERDVSL--HMEFRDELWSSLSGRVIPP   83 (174)
Q Consensus        10 ~~~~~~~~~~~~~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~~v~~~e~Dv~~--~~~~~~el~~~~g~~~~~P   83 (174)
                      .+.++++.-  .....++||...     +.|++|+++...|..    ++..+..+|+..  +......+.+..+ -.++|
T Consensus        15 t~~~~~~~i--~~~~~~~v~f~~-----~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~-V~~~P   86 (115)
T d1zmaa1          15 TVVRAQEAL--DKKETATFFIGR-----KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYG-IPTVP   86 (115)
T ss_dssp             CHHHHHHHH--HTTCCEEEEEEC-----TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHT-CCSSC
T ss_pred             CHHHHHHHH--hcCCCEEEEEcC-----CCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccc-ccccc
Confidence            344555443  123335555543     479999999888854    556666777753  3444445666666 88999


Q ss_pred             EEEE--CCEEEe
Q 047313           84 RLFI--KGRYIG   93 (174)
Q Consensus        84 ~vFI--~G~~IG   93 (174)
                      .+++  +|+.+.
T Consensus        87 Tli~~~~gk~~~   98 (115)
T d1zmaa1          87 GFVHITDGQINV   98 (115)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEECCEEEE
Confidence            9853  776543

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.022  Score=39.05  Aligned_cols=71  Identities=15%  Similarity=0.221  Sum_probs=43.7

Q ss_pred             cEEEEEeecC--CCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHH---HHHHhcCCCCCCcEEEE--CCEE
Q 047313           25 SVIFYTTSLR--GIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRD---ELWSSLSGRVIPPRLFI--KGRY   91 (174)
Q Consensus        25 ~VvlYttsl~--~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~---el~~~~g~~~~~P~vFI--~G~~   91 (174)
                      .|+||.++..  .-.+=|+.|+++.-.|+..      ++.|..+|+...++..+   .+.+..+ -..+|++.+  +|+-
T Consensus        23 ~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~-V~~iPT~i~~~~g~~  101 (119)
T d1woua_          23 TIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLK-VTAVPTLLKYGTPQK  101 (119)
T ss_dssp             EEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHC-CCSSSEEEETTSSCE
T ss_pred             EEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCC-eEEEEEEEEEECCeE
Confidence            5667665410  0001299999999998652      35678888865444333   2555566 889999753  5666


Q ss_pred             Eeccc
Q 047313           92 IGGAD   96 (174)
Q Consensus        92 IGG~d   96 (174)
                      +.+.+
T Consensus       102 l~~~~  106 (119)
T d1woua_         102 LVESE  106 (119)
T ss_dssp             EEGGG
T ss_pred             Eeeee
Confidence            65543

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.43  E-value=0.016  Score=36.84  Aligned_cols=69  Identities=12%  Similarity=0.130  Sum_probs=50.3

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      +...||.-+.      -..++.+|.+|...||+|+.+.+..+.  ..+.+.... ..++|.+.+||..|.....+.+.
T Consensus         2 ~s~kL~Yf~~------~g~~e~iRl~L~~~gi~yed~~~~~~~--~~~~~~~~p-~g~lP~l~~~g~~l~qS~aI~~Y   70 (76)
T d1m0ua2           2 HSYTLFYFNV------KALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMP-MGQMPVLEVDGKRVHQSISMARF   70 (76)
T ss_dssp             CCEEEEEESS------SGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSG-GGCSCEEEETTEEEECHHHHHHH
T ss_pred             ccEEEEecCC------chHHHHHHHHHHHcCCCCEEecCChhh--hhhhhccCc-CCCCcEEEECCcccccHHHHHHH
Confidence            4566776653      357899999999999999999886543  234444443 56899999999988766655443

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.013  Score=41.46  Aligned_cols=69  Identities=13%  Similarity=0.171  Sum_probs=47.2

Q ss_pred             hhHhhCCCCCCCcEEE-EEeecCCCCCCChhHHHHHHHHHhC------CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE
Q 047313           13 GYEEKCPPGGEDSVIF-YTTSLRGIRKTFEDCRTIRFLLQSF------KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL   85 (174)
Q Consensus        13 ~~~~~~~~~~~~~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~~------~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v   85 (174)
                      +|++.--......|+| |+++      .|+.|.++..+|+..      .+.|..+|+..+++    +.+.++ -..+|++
T Consensus        12 ~~dq~i~~~~~k~vvv~F~a~------wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~----la~~~~-I~~~PT~   80 (137)
T d1qgva_          12 QVDQAILSEEDRVVVIRFGHD------WDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMYE-LYDPCTV   80 (137)
T ss_dssp             HHHHHHHTCSSSEEEEEEECT------TSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSSC-SCSSCEE
T ss_pred             HHHHHHHhCCCCEEEEEEECC------CCccchhcChHHHHHHHHhhccceEEEeeccccch----hhhhcC-eeeEEEE
Confidence            3444332223334555 6666      599999999999763      36788999987765    444555 7789987


Q ss_pred             --EECCEEE
Q 047313           86 --FIKGRYI   92 (174)
Q Consensus        86 --FI~G~~I   92 (174)
                        |.+|++|
T Consensus        81 ~~f~~g~~i   89 (137)
T d1qgva_          81 MFFFRNKHI   89 (137)
T ss_dssp             EEEETTEEE
T ss_pred             EEEeCCcEE
Confidence              6799987

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=95.13  E-value=0.069  Score=35.09  Aligned_cols=60  Identities=13%  Similarity=0.211  Sum_probs=39.9

Q ss_pred             CcEEE-EEeecCCCCCCChhHHHHHHHHHh----C--CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEec
Q 047313           24 DSVIF-YTTSLRGIRKTFEDCRTIRFLLQS----F--KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGG   94 (174)
Q Consensus        24 ~~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~----~--~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG   94 (174)
                      ..|+| |+++      -|+.|+.+...+..    +  .+.+..+|+..++.    +.+.++ -..+|.++  .+|+.++-
T Consensus        21 ~~v~v~F~a~------wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~----l~~~~~-v~~~PT~~~~~~G~~v~~   89 (108)
T d2trxa_          21 GAILVDFWAE------WCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYG-IRGIPTLLLFKNGEVAAT   89 (108)
T ss_dssp             SEEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHTT-CCSSSEEEEEETTEEEEE
T ss_pred             CcEEEEEECC------CCCCccccCcHHHHHHHHhhcceeeeeccccchhh----HHHHhC-CCcEEEEEEEECCEEEEE
Confidence            44555 5665      49999988877754    2  34567788876654    445556 78899874  48876543

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=95.11  E-value=0.047  Score=34.59  Aligned_cols=58  Identities=10%  Similarity=0.059  Sum_probs=43.6

Q ss_pred             ChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhh
Q 047313           40 FEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        40 c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~  100 (174)
                      -..++.+|.+|...|++|+++.+..  +...+.+.... ..++|.+.+||..|.....+.+
T Consensus        12 ~gr~e~vR~~L~~~gi~ye~~~~~~--~~~~~~~~~~p-~g~lPvL~~~g~~i~qS~AI~~   69 (77)
T d1tw9a2          12 RGAGECARQVFALADQKYEDVRLTQ--ETFVPLKATFP-FGQVPVLEVDGQQLAQSQAICR   69 (77)
T ss_dssp             SGGGHHHHHHHHHTTCCCEEEEECH--HHHGGGGGGST-TSCSCEEEETTEEEECHHHHHH
T ss_pred             chHHHHHHHHHHHcCCCceeeeccc--ccchhhhhhcc-cCCCCEEEECCEEEEcHHHHHH
Confidence            4789999999999999999988853  33344444443 6689999999988866555443

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=94.99  E-value=0.02  Score=36.43  Aligned_cols=59  Identities=14%  Similarity=0.120  Sum_probs=44.5

Q ss_pred             ChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECCEEEeccchhhhh
Q 047313           40 FEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKGRYIGGADEVVGL  101 (174)
Q Consensus        40 c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G~~IGG~del~~l  101 (174)
                      ...++.+|-+|...|++|+++.+....  ..+++.... ..++|.+.++|..|.....+.+.
T Consensus        11 ~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p-~g~lPvL~~~~~~l~qS~AI~~Y   69 (77)
T d1tu7a2          11 RGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQFQ-FGQLPCLYDGDQQIVQSGAILRH   69 (77)
T ss_dssp             SGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGST-TSCSCEEEETTEEEESHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCceeeeccccc--chhhcccCC-CCCCCEEEECCEEEEcHHHHHHH
Confidence            478999999999999999988875432  233444443 67899999999988776665444

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=94.85  E-value=0.1  Score=36.66  Aligned_cols=20  Identities=20%  Similarity=0.346  Sum_probs=15.8

Q ss_pred             CCCCcEEEECCEEEeccchh
Q 047313           79 RVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        79 ~~~~P~vFI~G~~IGG~del   98 (174)
                      -..+|.+||||+|+-+....
T Consensus       145 i~gTPt~~InGk~~v~~~~~  164 (181)
T d1beda_         145 LTGVPAVVVNNRYLVQGQSV  164 (181)
T ss_dssp             CCSSSEEEETTTEEECGGGC
T ss_pred             CccccEEEECCEEeeCCCCC
Confidence            56899999999988665544

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.83  E-value=0.14  Score=34.28  Aligned_cols=60  Identities=17%  Similarity=0.280  Sum_probs=41.2

Q ss_pred             CCcEEE-EEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCC-CHHHHHHHHHhcCCCCCCcEEE--ECCEEEe
Q 047313           23 EDSVIF-YTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSL-HMEFRDELWSSLSGRVIPPRLF--IKGRYIG   93 (174)
Q Consensus        23 ~~~Vvl-Yttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~-~~~~~~el~~~~g~~~~~P~vF--I~G~~IG   93 (174)
                      +..|+| |+++      .|+.|..+...|+.     .++.+..+|++. +++    +.+.++ -..+|.+.  -+|+.+.
T Consensus        25 ~k~vvv~f~a~------wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~~----l~~~~~-V~~~Pt~~~~k~G~~v~   93 (112)
T d1f9ma_          25 DKPVVLDMFTQ------WCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKT----LAKELG-IRVVPTFKILKENSVVG   93 (112)
T ss_dssp             TSCEEEEEECT------TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTHH----HHHHHC-CSSSSEEEEEETTEEEE
T ss_pred             CCEEEEEEEcC------CCcchHHHHHHHhhhccccccceeecccccccchh----hHhhee-eccCCEEEEEECCEEEE
Confidence            334555 4554      59999999988875     567788888864 444    334445 77889884  3887654

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.59  E-value=0.13  Score=34.97  Aligned_cols=67  Identities=13%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             CCcEEEEEeecCCCCCCChhH------HHHHHHHHh--------CCCcEEEEECCCCHH----HHHHH-HHhcCCCCCCc
Q 047313           23 EDSVIFYTTSLRGIRKTFEDC------RTIRFLLQS--------FKVTFYERDVSLHME----FRDEL-WSSLSGRVIPP   83 (174)
Q Consensus        23 ~~~VvlYttsl~~ir~~c~~C------~~vr~iL~~--------~~v~~~e~Dv~~~~~----~~~el-~~~~g~~~~~P   83 (174)
                      +..|+||++..     .|+-|      .....+|+.        +.+.|+.+||..+++    ..+++ .++....--.|
T Consensus         7 ~v~i~VYGA~~-----iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYP   81 (111)
T d1xg8a_           7 SNAVVVYGADV-----ICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             CEEEEEEECSS-----CCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             eeEEEEEcccc-----cchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceee
Confidence            45799999974     67776      455555543        355689999966543    33344 34444355679


Q ss_pred             EEEECCEEEec
Q 047313           84 RLFIKGRYIGG   94 (174)
Q Consensus        84 ~vFI~G~~IGG   94 (174)
                      .|.|+|++||.
T Consensus        82 lV~i~~eiVaE   92 (111)
T d1xg8a_          82 LITMNDEYVAD   92 (111)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCEEeec
Confidence            99999999974

>d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Cysteine-rich domain of the chaperone protein DnaJ
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.017  Score=37.20  Aligned_cols=38  Identities=26%  Similarity=0.682  Sum_probs=30.5

Q ss_pred             CCCCCCCCcceE-----------eCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          121 CSCNGCGNIRFV-----------LCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       121 ~~C~~Cgg~r~v-----------~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      ..|..|.|.+.+           +|+.|+|+.+++           .-+|+.|+-+|.++
T Consensus        29 ~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i-----------~~~C~~C~G~G~v~   77 (79)
T d1exka_          29 QTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLI-----------KDPCNKCHGHGRVE   77 (79)
T ss_dssp             EECTTTTTSSEEEEEETTEEEEEECTTTTTSSEEC-----------SSBCGGGTTSSEEE
T ss_pred             eeCCCccceeEEEEecccceeeEECcccCcceeEC-----------CCCCCCCCCceEee
Confidence            459999999865           699999998873           23699999988764

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.1  Score=33.12  Aligned_cols=69  Identities=13%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCH-------HHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHM-------EFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~-------~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      ++++|.-++      -..++.+|.+|...|++|+.+.++.+.       +...+-.....-...+|.|..+|..|...-.
T Consensus         1 P~~L~Y~~~------~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~A   74 (84)
T d2c4ja2           1 PMTLGYWNI------RGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNA   74 (84)
T ss_dssp             CEEEEEESS------SGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHH
T ss_pred             CEEEEECCC------chhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEECCEEEecHHH
Confidence            366755553      468999999999999999999886542       1111111111114579999999988765544


Q ss_pred             hh
Q 047313           98 VV   99 (174)
Q Consensus        98 l~   99 (174)
                      +.
T Consensus        75 Il   76 (84)
T d2c4ja2          75 IL   76 (84)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=94.13  E-value=0.043  Score=34.89  Aligned_cols=57  Identities=9%  Similarity=0.000  Sum_probs=38.0

Q ss_pred             hhHHHHHHHHHhCCCcEEEEECCCC--HHHHHHHHHhcCCCCCCcEEEECCEEEeccch
Q 047313           41 EDCRTIRFLLQSFKVTFYERDVSLH--MEFRDELWSSLSGRVIPPRLFIKGRYIGGADE   97 (174)
Q Consensus        41 ~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~~el~~~~g~~~~~P~vFI~G~~IGG~de   97 (174)
                      ..++.+|.+|...|++|+.+.++.+  ++...+.........++|.+..+|..|...-.
T Consensus        11 grae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~A   69 (80)
T d1fhea2          11 GLAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVA   69 (80)
T ss_dssp             TTTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTH
T ss_pred             hHHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeeecCCeEEeCHHH
Confidence            5788999999999999999988764  33222221111125678999888766544333

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.78  E-value=0.21  Score=34.81  Aligned_cols=22  Identities=9%  Similarity=0.001  Sum_probs=17.2

Q ss_pred             CCCCcEEEECCEEEeccchhhh
Q 047313           79 RVIPPRLFIKGRYIGGADEVVG  100 (174)
Q Consensus        79 ~~~~P~vFI~G~~IGG~del~~  100 (174)
                      -..+|.+||||+++-|.-...+
T Consensus       144 I~gTPt~~Ing~~~~g~~~~~~  165 (172)
T d1z6ma1         144 IQFVPTIIIGEYIFDESVTEEE  165 (172)
T ss_dssp             CCSSCEEEETTEEECTTCCHHH
T ss_pred             CCcCCEEEECCEEecCCCCHHH
Confidence            5689999999999977655433

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.47  E-value=0.18  Score=33.71  Aligned_cols=56  Identities=13%  Similarity=0.060  Sum_probs=39.7

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh-------CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE--CCE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS-------FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI--KGR   90 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~-------~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI--~G~   90 (174)
                      .-+|.|+++      .|+.|..+...++.       .+|.+-.+|+..+.+    +.+.++ ...+|.|++  +|+
T Consensus        29 ~~lV~fya~------wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~----l~~~~~-v~~~Pti~~f~~g~   93 (119)
T d2b5ea4          29 LVLAEFFAP------WCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD----LCMEHN-IPGFPSLKIFKNSD   93 (119)
T ss_dssp             EEEEEEECT------TCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH----HHHHTT-CCSSSEEEEEETTC
T ss_pred             eEEEEEECC------ccCcccccchhhhhhhhhhcccceeeeeeeccchHH----HHHHhc-cccCCeEEEEECCE
Confidence            345566665      59999998877754       247788999987665    444455 788999965  663

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=93.15  E-value=0.017  Score=36.89  Aligned_cols=64  Identities=13%  Similarity=0.140  Sum_probs=41.5

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCC--HHHH-HHHHHhcCCCCCCcEEEEC-CEEEeccchh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLH--MEFR-DELWSSLSGRVIPPRLFIK-GRYIGGADEV   98 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~--~~~~-~el~~~~g~~~~~P~vFI~-G~~IGG~del   98 (174)
                      .+|+.+.     +  .+.+++.+|..+|++|+.+.|...  .+.+ .++.++.- ..++|.+.++ |..|-....+
T Consensus         2 kLY~~p~-----s--~s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~~g~~l~ES~aI   69 (80)
T d1pmta2           2 KLYYTPG-----S--CSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINP-KGQVPVLQLDNGDILTEGVAI   69 (80)
T ss_dssp             EEEECTT-----S--TTHHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCT-TCCSCEEECTTSCEEESHHHH
T ss_pred             EEEeCCC-----C--hHHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhcc-cccCCceecCCCcEEeCHHHH
Confidence            4787663     2  358999999999999886665432  2222 33555544 7799999875 4555443333

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=92.60  E-value=0.14  Score=32.35  Aligned_cols=60  Identities=10%  Similarity=-0.054  Sum_probs=40.1

Q ss_pred             ChhHHHHHHHHHhCCCcEEEEECCCCHH-HHHHHHHhcC-CCCCCcEEEECCEEEeccchhh
Q 047313           40 FEDCRTIRFLLQSFKVTFYERDVSLHME-FRDELWSSLS-GRVIPPRLFIKGRYIGGADEVV   99 (174)
Q Consensus        40 c~~C~~vr~iL~~~~v~~~e~Dv~~~~~-~~~el~~~~g-~~~~~P~vFI~G~~IGG~del~   99 (174)
                      -...+.+|.+|...|++|+++.+..... .....+.... ...++|.+..+|..|.....+.
T Consensus        10 rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~   71 (80)
T d1duga2          10 KGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAII   71 (80)
T ss_dssp             SGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHH
T ss_pred             chhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceeccCCeeehhHHHHH
Confidence            3788999999999999999988865432 2222211111 2468999998887665544443

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.21  Score=35.37  Aligned_cols=37  Identities=16%  Similarity=0.259  Sum_probs=23.7

Q ss_pred             CCCCcEEEEEeecCCCCCCChhHHHHHHHH----H-----hCCCcEEEEECC
Q 047313           21 GGEDSVIFYTTSLRGIRKTFEDCRTIRFLL----Q-----SFKVTFYERDVS   63 (174)
Q Consensus        21 ~~~~~VvlYttsl~~ir~~c~~C~~vr~iL----~-----~~~v~~~e~Dv~   63 (174)
                      .+...||-|.. +     +||+|.+.-..|    +     ...+.|..+.+.
T Consensus        17 ~~~~~VvEffd-y-----~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          17 AGAPQVLEFFS-F-----FCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             TTCCSEEEEEC-T-----TCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CCCCEEEEEEC-C-----CChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            44456777774 4     899998866543    2     124667777763

>d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: DnaJ/Hsp40 cysteine-rich domain
superfamily: DnaJ/Hsp40 cysteine-rich domain
family: DnaJ/Hsp40 cysteine-rich domain
domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.31  E-value=0.052  Score=34.32  Aligned_cols=41  Identities=22%  Similarity=0.592  Sum_probs=29.4

Q ss_pred             CCCCCCCCCcce---------------EeCCCCCCCeeeeecCCCCCCccccccCcccccCcccc
Q 047313          120 DCSCNGCGNIRF---------------VLCSNCSGSCKVFRDGDDDDDDELHIRCPECNENGLVK  169 (174)
Q Consensus       120 ~~~C~~Cgg~r~---------------v~C~~C~Gs~k~~~~~~~~~~~~~~~rC~~CnenGl~~  169 (174)
                      ...|..|.|.++               .+|+.|+|+.+++..         .-+|+.|+-.|.++
T Consensus        18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~---------~~~C~~C~G~g~v~   73 (74)
T d1nlta3          18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDP---------KDRCKSCNGKKVEN   73 (74)
T ss_dssp             CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCT---------TSBCSSSTTSCEEE
T ss_pred             CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCC---------CCCCCCCCCeeEeC
Confidence            346999999875               359999998766431         24689998887764

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=92.15  E-value=0.027  Score=35.91  Aligned_cols=67  Identities=12%  Similarity=0.129  Sum_probs=44.8

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCC--CH-HHHHHHHHhcCCCCCCcEEEEC-CEEEeccchhhhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSL--HM-EFRDELWSSLSGRVIPPRLFIK-GRYIGGADEVVGL  101 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~--~~-~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del~~l  101 (174)
                      .+|.++.     +|  ..+++-+|..+|++|+.+.+..  .. ...+++.++.- ..++|.+.++ |..|.....+.+.
T Consensus         2 kLY~~p~-----s~--s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~d~g~~l~ES~aI~~y   72 (80)
T d1f2ea2           2 KLFISPG-----AC--SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNP-SGKVPALTLDSGETLTENPAILLY   72 (80)
T ss_dssp             EEEECTT-----ST--THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCT-TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             EEecCCC-----ch--HHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHhh-ccccceEEECCCeEEecHHHHHHH
Confidence            4787652     34  4789999999999987766632  22 22345666655 7799999874 6666655555443

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.02  Score=36.53  Aligned_cols=67  Identities=12%  Similarity=0.132  Sum_probs=43.7

Q ss_pred             EEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECC--CCH-HHHHHHHHhcCCCCCCcEEEE-CCEEEeccchhhhh
Q 047313           27 IFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVS--LHM-EFRDELWSSLSGRVIPPRLFI-KGRYIGGADEVVGL  101 (174)
Q Consensus        27 vlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~--~~~-~~~~el~~~~g~~~~~P~vFI-~G~~IGG~del~~l  101 (174)
                      .||..+.     +|  +.+++.+|+.+|++|+.+.|.  ... ...+++.++.. ...+|.+.. ||..|-....+.+.
T Consensus         2 kLY~~p~-----s~--s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP-~g~vP~L~~~dg~~l~ES~aI~~y   72 (80)
T d1n2aa2           2 KLFYKPG-----AC--SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNP-KGQVPALLLDDGTLLTEGVAIMQY   72 (80)
T ss_dssp             EEEECTT-----ST--THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCT-TCCSCEEECTTSCEEESHHHHHHH
T ss_pred             EEEeCCC-----cc--HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHhc-ccceeeEEecCCCEEcCHHHHHHH
Confidence            4687663     33  578999999999998876653  222 22334555544 778999987 45666555554443

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.48  Score=33.60  Aligned_cols=34  Identities=18%  Similarity=0.113  Sum_probs=24.2

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHH----HHhCCCcEEEEECC
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFL----LQSFKVTFYERDVS   63 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~i----L~~~~v~~~e~Dv~   63 (174)
                      ..|++|+-.      .||+|++.-..    ++...+.|..+++.
T Consensus        38 ~tv~vF~D~------~CP~C~~~~~~l~~l~~~~~v~v~~~~~~   75 (169)
T d1v58a1          38 VIVYVFADP------FCPYCKQFWQQARPWVDSGKVQLRTLLVG   75 (169)
T ss_dssp             EEEEEEECT------TCHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             EEEEEEECC------CCcchHHHHHHHHHHHhccceeEEEEecc
Confidence            356777775      89999865544    45567888888873

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=91.58  E-value=0.34  Score=31.84  Aligned_cols=48  Identities=10%  Similarity=0.147  Sum_probs=35.0

Q ss_pred             CChhHHHHHHHH-------Hh-CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           39 TFEDCRTIRFLL-------QS-FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        39 ~c~~C~~vr~iL-------~~-~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      .|++|+.+...+       +. ..+.+..+|+..+...-.+|.+..+ ...+|.+++
T Consensus        33 wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-v~~~Pt~~~   88 (117)
T d2fwha1          33 WCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLN-VLGLPTILF   88 (117)
T ss_dssp             TCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTT-CCSSSEEEE
T ss_pred             cCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhe-hhhceEEEE
Confidence            599999986554       22 2455778888887776777777777 788898853

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.31  E-value=0.26  Score=33.33  Aligned_cols=55  Identities=9%  Similarity=0.141  Sum_probs=30.6

Q ss_pred             CChhHHHHHHHHHhC-----C--CcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEeccchh
Q 047313           39 TFEDCRTIRFLLQSF-----K--VTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGGADEV   98 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~-----~--v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG~del   98 (174)
                      -||.|..+.-+|...     +  +.+-.+|+    +.-.++.+.+| ...+|.++  -+|+.++-+.-.
T Consensus        41 wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~----d~~~~l~~~~~-V~~~Pt~~~~~~G~~v~~~~G~  104 (119)
T d2es7a1          41 RTPEVSDNPVMIAELLREFPQFDWQVAVADL----EQSEAIGDRFN-VRRFPATLVFTDGKLRGALSGI  104 (119)
T ss_dssp             C----CCHHHHHHHHHHTCTTSCCEEEEECH----HHHHHHHHTTT-CCSSSEEEEESCC----CEESC
T ss_pred             CCccHHHHHHHHHHHHHhcCCCceEEEEEEC----CCCHHHHHhcC-cCcceEEEEEEcCeEEEEeeCC
Confidence            499999998888652     3  33445554    34456777777 88999884  488877655443

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.26  E-value=0.33  Score=30.38  Aligned_cols=63  Identities=11%  Similarity=0.028  Sum_probs=46.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEEC-CEEEeccchh
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIK-GRYIGGADEV   98 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~-G~~IGG~del   98 (174)
                      ++++|+..       -+....++.+++..+++|+.++...   ..+++.+..- ...+|.+..+ |..|-....+
T Consensus         3 ~~tLY~~~-------~~rs~~~~~~l~~~~~d~~~~~~~~---~~~~~~~~nP-~gkVP~L~~~~g~~l~ES~aI   66 (75)
T d1nhya2           3 QGTLYANF-------RIRTWVPRGLVKALKLDVKVVTPDA---AAEQFARDFP-LKKVPAFVGPKGYKLTEAMAI   66 (75)
T ss_dssp             TCEEECCS-------SHHHHHHHHHHHHHTCCCEEECGGG---CHHHHHHHCT-TCCSSEEECGGGCEEESHHHH
T ss_pred             CeEEecCC-------CchHHHHHHHHHhcCccccccCccc---CCHHHHHhCc-CCCCCeEEeCCeeEecCHHHH
Confidence            56889975       3678999999999999998876532   3446777765 7899999754 6666544443

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=88.41  E-value=0.096  Score=33.79  Aligned_cols=61  Identities=20%  Similarity=0.170  Sum_probs=40.9

Q ss_pred             CCCcEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHH--HHHHhcCCCCCCcEEEECC
Q 047313           22 GEDSVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRD--ELWSSLSGRVIPPRLFIKG   89 (174)
Q Consensus        22 ~~~~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~--el~~~~g~~~~~P~vFI~G   89 (174)
                      +...++||..+.      -...+.+|-+|...|++|+.+.+......++  +.+.... ...+|.+.+++
T Consensus         4 ~M~~~~L~Y~~~------~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p-~~~~P~l~~~~   66 (87)
T d2fnoa2           4 GMNTFDLYYWPV------PFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVA-FMGPPVLIDRE   66 (87)
T ss_dssp             SCBSEEEECCSS------SSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSC-CSSSCEEEETT
T ss_pred             CCCCeEEEECCC------CcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCC-CCCCCEEEecC
Confidence            446788998874      3688999999999999999877632222111  1122222 56889998854

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=86.71  E-value=0.43  Score=32.94  Aligned_cols=57  Identities=12%  Similarity=0.163  Sum_probs=38.6

Q ss_pred             CChhHHHHHHHHHhC-----CCcE--EEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCEEEeccchhhh
Q 047313           39 TFEDCRTIRFLLQSF-----KVTF--YERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGRYIGGADEVVG  100 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~-----~v~~--~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~~IGG~del~~  100 (174)
                      -|+.|..+.-+|...     +..+  -.+|+    +.-.++.+.++ ...+|.+.  -+|+.++.+.-...
T Consensus        47 wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~----d~~~~la~~~~-V~~~PT~~~~~~G~~v~~~~G~~~  112 (132)
T d2hfda1          47 RTPEVSDNPVMIGELLREFPDYTWQVAIADL----EQSEAIGDRFG-VFRFPATLVFTGGNYRGVLNGIHP  112 (132)
T ss_dssp             CCSSSSCCTHHHHHHHTTCTTSCEEEEEECH----HHHHHHHHHHT-CCSCCEEEEEETTEEEEEECCCSC
T ss_pred             CChhHHHHHHHHHHHHHHccCCcceeEEEEe----cCCHHHHHhhc-cCcceeEEEEEcCcEeeeecCCCC
Confidence            599999888888763     2233  34555    33456767777 88999774  49998887655443

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.55  E-value=0.93  Score=30.90  Aligned_cols=55  Identities=20%  Similarity=0.254  Sum_probs=38.3

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFI   87 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI   87 (174)
                      .+++|+..     ..|++|..++++|+.     -+|.++++|...+ + ..++.+..+ ....|.+.|
T Consensus        25 ~l~~~~~~-----~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~-e-~~~~~~~~~-ver~Ps~~i   84 (119)
T d1a8la1          25 KLIVFVRK-----DHCQYCDQLKQLVQELSELTDKLSYEIVDFDTP-E-GKELAKRYR-IDRAPATTI   84 (119)
T ss_dssp             EEEEEECS-----SSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSH-H-HHHHHHHTT-CCSSSEEEE
T ss_pred             EEEEEecC-----CCchhHHHHHHHHHHHHhhCCCeEEEEeccCcc-h-hhhHHHhhc-cccCceEEE
Confidence            57777753     269999999999986     3567888888543 2 344555555 677897755

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.16  E-value=0.34  Score=34.01  Aligned_cols=79  Identities=10%  Similarity=0.071  Sum_probs=43.6

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHH----------HHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE-EEC---C
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRF----------LLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL-FIK---G   89 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~----------iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v-FI~---G   89 (174)
                      ..|+||..+     ..|++|+.+.+          +|+.+   |..+.|..+..--..+.+.++ ...+|.+ ||+   |
T Consensus        43 K~llV~~~~-----~~C~~C~~m~~~v~~d~~V~~~l~~~---fV~~~v~~~~~e~~~~~~~y~-v~~~Pti~~idp~~g  113 (147)
T d2dlxa1          43 KWLMINIQN-----VQDFACQCLNRDVWSNEAVKNIIREH---FIFWQVYHDSEEGQRYIQFYK-LGDFPYVSILDPRTG  113 (147)
T ss_dssp             CEEEEEEEC-----SCTTTHHHHHHHTTTCHHHHHHHHHT---EEEEEEESSSHHHHHHHHHHT-CCSSSEEEEECTTTC
T ss_pred             CcEEEEEec-----CCCCchHHHHHhccCCHHHHHHHhhh---eeEeeecccchhhhhhhhhee-cCceeEEEEEeCCCC
Confidence            457777776     36999977644          44332   444444333333445666666 7789987 564   4


Q ss_pred             EE---EeccchhhhhhhcCchhHHhhcC
Q 047313           90 RY---IGGADEVVGLHEQGKLKKLLEGI  114 (174)
Q Consensus        90 ~~---IGG~del~~l~e~G~L~~~L~~~  114 (174)
                      +.   .|+. +..++.  ..|.++|..-
T Consensus       114 e~v~~~~~~-~~~~fl--~~L~~fl~~~  138 (147)
T d2dlxa1         114 QKLVEWHQL-DVSSFL--DQVTGFLGEH  138 (147)
T ss_dssp             CCCEEESSC-CHHHHH--HHHHHHHHHT
T ss_pred             eEecccCCC-CHHHHH--HHHHHHHhhC
Confidence            43   3443 233332  2366666543

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=84.67  E-value=2.8  Score=27.72  Aligned_cols=33  Identities=15%  Similarity=0.017  Sum_probs=20.9

Q ss_pred             CChhHHHHHHHHH-------hCCCcEEEEECCCCHHHHHH
Q 047313           39 TFEDCRTIRFLLQ-------SFKVTFYERDVSLHMEFRDE   71 (174)
Q Consensus        39 ~c~~C~~vr~iL~-------~~~v~~~e~Dv~~~~~~~~e   71 (174)
                      .|+.|......|.       ..++.+.-+.+..+++..++
T Consensus        36 ~C~~C~~~~~~l~~~~~~~~~~~~~~v~i~~~~~~~~~~~   75 (137)
T d1st9a_          36 WCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHN   75 (137)
T ss_dssp             TCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHH
T ss_pred             cccceeecccccccccccccccccccccccccchhhhHHH
Confidence            6999976666554       34567777776655543333

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=83.95  E-value=0.097  Score=38.81  Aligned_cols=54  Identities=15%  Similarity=0.178  Sum_probs=35.1

Q ss_pred             HHHHHHHHhCCCcEEEEECC-CCHHHHHHHH------HhcCCCCCCcEEEECCEEEeccchh
Q 047313           44 RTIRFLLQSFKVTFYERDVS-LHMEFRDELW------SSLSGRVIPPRLFIKGRYIGGADEV   98 (174)
Q Consensus        44 ~~vr~iL~~~~v~~~e~Dv~-~~~~~~~el~------~~~g~~~~~P~vFI~G~~IGG~del   98 (174)
                      ..+++++.+.|++-+..+-. .+..++..+.      +.+| -..+|.++|||+|+-+...+
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~g-i~GtPtfiVnGky~v~~~~~   67 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQ-LRGVPAMFVNGKYQLNPQGM   67 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTT-CCSSSEEEETTTEEECGGGS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhC-CCcCCEEEECCeeeeccccc
Confidence            46788888888875444432 2334443332      2345 88999999999998665443

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.89  E-value=0.39  Score=35.85  Aligned_cols=73  Identities=16%  Similarity=0.182  Sum_probs=48.0

Q ss_pred             CChhHHHHHHHHHhC-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEEeccchhhhhh----hcCch
Q 047313           39 TFEDCRTIRFLLQSF-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYIGGADEVVGLH----EQGKL  107 (174)
Q Consensus        39 ~c~~C~~vr~iL~~~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~IGG~del~~l~----e~G~L  107 (174)
                      .|+.|..+...|..+     .|.|..+|...    .. +...++ ...+|.|  |-||+.++.+-.+..+-    ....|
T Consensus       131 ~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~----~~-~~~~~~-i~~lPtl~~yk~G~~v~~~vg~~~~~g~~~~~~~l  204 (217)
T d2trcp_         131 GVRGCDALNSSLECLAAEYPMVKFCKIRASN----TG-AGDRFS-SDVLPTLLVYKGGELISNFISVAEQFAEDFFAADV  204 (217)
T ss_dssp             TSTTHHHHHHHHHHHHTTCTTSEEEEEEHHH----HT-CSTTSC-GGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHH
T ss_pred             CCCChhhhhhhHHHHhhhcccceEEEEcccc----ch-hHHhCC-CCCCCeEEEEECCEEEEEEECccccccccCCHHHH
Confidence            699999999999873     45677777631    11 223344 6788987  56999888665554432    12347


Q ss_pred             hHHhhcCCCC
Q 047313          108 KKLLEGIPRN  117 (174)
Q Consensus       108 ~~~L~~~~~~  117 (174)
                      +.+|...+..
T Consensus       205 E~~L~~~g~l  214 (217)
T d2trcp_         205 ESFLNEYGLL  214 (217)
T ss_dssp             HHHHHTTTCS
T ss_pred             HHHHHHcCCC
Confidence            8888776654

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=83.70  E-value=0.68  Score=30.87  Aligned_cols=63  Identities=13%  Similarity=0.107  Sum_probs=38.1

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHH-------hCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEE--EECCEEE
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQ-------SFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRL--FIKGRYI   92 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~-------~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~v--FI~G~~I   92 (174)
                      -+|+|.++|.+-+...+.|..+...++       ..+|.+-.+|...++.+    .+..+ -..+|+|  |.+|+.+
T Consensus        31 ~~V~FyapwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l----~~~~~-I~~yPTi~~f~~g~~~  102 (124)
T d1a8ya1          31 LALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAV----AKKLG-LTEEDSIYVFKEDEVI  102 (124)
T ss_dssp             EEEEEECCCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHH----HHTTT-CCSTTCEEEEESSSEE
T ss_pred             EEEEEECCCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccch----hhccc-cccCCcEEEeccCccE
Confidence            588899987421111123444444443       45688999999887664    44445 6667777  4566544

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.41  E-value=0.5  Score=31.13  Aligned_cols=56  Identities=7%  Similarity=0.132  Sum_probs=36.0

Q ss_pred             CcEEEEEeecCCCCCCChhHHHHHHHHHh----C-----CCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEE--ECCE
Q 047313           24 DSVIFYTTSLRGIRKTFEDCRTIRFLLQS----F-----KVTFYERDVSLHMEFRDELWSSLSGRVIPPRLF--IKGR   90 (174)
Q Consensus        24 ~~VvlYttsl~~ir~~c~~C~~vr~iL~~----~-----~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vF--I~G~   90 (174)
                      .-+|.|+++|      |+.|+.+...+..    +     .|.+..+|+..+..+..    ..+ ...+|.|+  .+|+
T Consensus        26 ~vlV~Fya~w------C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~----~~~-i~~~Pt~~~~~~G~   92 (120)
T d1meka_          26 YLLVEFYAPW------CGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQ----QYG-VRGYPTIKFFRNGD   92 (120)
T ss_dssp             EEEEEEECSS------CSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHH----HHT-CCSSSEEEEEESSC
T ss_pred             cEEEEEECCC------cCCccccchhhhhhcccccccccceeeeccccccchhHHH----HhC-CccCCeEEEEECCe
Confidence            3455677764      9999877655533    2     36788899877655433    345 77899863  3653

>d1oe8a2 c.47.1.5 (A:4-84) Class alpha GST {Blood fluke (Schistosoma haematobium) [TaxId: 6185]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Blood fluke (Schistosoma haematobium) [TaxId: 6185]

Probab=81.73  E-value=0.89  Score=28.30  Aligned_cols=56  Identities=13%  Similarity=0.096  Sum_probs=38.0

Q ss_pred             cEEEEEeecCCCCCCChhHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHhcCCCCCCcEEEECC
Q 047313           25 SVIFYTTSLRGIRKTFEDCRTIRFLLQSFKVTFYERDVSLHMEFRDELWSSLSGRVIPPRLFIKG   89 (174)
Q Consensus        25 ~VvlYttsl~~ir~~c~~C~~vr~iL~~~~v~~~e~Dv~~~~~~~~el~~~~g~~~~~P~vFI~G   89 (174)
                      ++.+|.-+.      -..++.+|.+|...|++|+++.++.+..  .+.+.... ...+|.+.+.+
T Consensus         2 ~~kL~Y~~~------rgr~e~iR~lL~~~gv~ye~~~~~~~~~--~~~k~~~~-~~~lP~~~~p~   57 (81)
T d1oe8a2           2 HIKVIYFNG------RGRAESIRMTLVAAGVNYEDERISFQDW--PKIKPTIP-GGRLPAVKITD   57 (81)
T ss_dssp             EEEEEESCT------TSTTHHHHHHHHHTTCCCEEEECCTTTH--HHHGGGST-TSCSCEEEEEC
T ss_pred             CEEEEeCCC------chHHHHHHHHHHHcCCCceeEeccchhh--HHhhhccc-ccCCCcccCCc
Confidence            466766653      3689999999999999999998865432  23333332 34567776644

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.36  E-value=3.6  Score=27.24  Aligned_cols=38  Identities=16%  Similarity=0.011  Sum_probs=26.5

Q ss_pred             CChhHHHHHHHHHh-----CCCcEEEEECCCCHHHHHHHHHhc
Q 047313           39 TFEDCRTIRFLLQS-----FKVTFYERDVSLHMEFRDELWSSL   76 (174)
Q Consensus        39 ~c~~C~~vr~iL~~-----~~v~~~e~Dv~~~~~~~~el~~~~   76 (174)
                      .|+.|.+....|++     .++.+..+....+....+++.+..
T Consensus        35 wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~   77 (134)
T d1lu4a_          35 WCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKY   77 (134)
T ss_dssp             TCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHH
T ss_pred             ccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhh
Confidence            59999887766643     477788888877766555555444