Citrus Sinensis ID: 047314

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MELIERSMVQPIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNIRVEERSG
Secondary Structure (PSIPRED)
ccEEcccccccccccEEcHHHHHHHHHHHcccccEEEEcccccEEEccccccEEEEEEccccccccccccccccccccEEEEcccccccccHHHHccccccEEEccccccccccccccEEEccccccccccccccccccccccccEEEEEcccccccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccEEcHHHHHHHHHHHHHHHcccEEEEccccccEEcccccEEEEEEEccccccccccHHHHHHHHHHHHcccccccHHccHHHHHHHHHHEEccccccHHHccHHHHHHHHHHHEEEEccccccccccHHHccccccHHHHHHHHHHcEEEEEEEccccccc
Coil and Loop (DISEMBL)
meliersmvqpiktIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKlpssmgnlfnlqsldlsstlvdpipllkhvcfnefremvvnppveaslpnLQKLIgtemvcssgrfshlqflklSNIRVEERSG
Flexible Loop (DISEMBL)
meliersmvqpiktiqvhDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGrfshlqflklsnirveersg
Low Complexity Region (SEG)
MELIERSMVQPIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNIRVEERSG
Disordered region (IsUnstruct)
*********QPIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNI*******
Disordered Region (DISOPRED)
MELIERSMVQPIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNIRVE****
Disordered Region (DISEMBL)
MELIERSMVQPIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNIRVEERSG
Disordered Region (DISPRO)
MELIERSMVQPIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNIRV*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELIERSMVQPIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNIRVEERSG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q9SX38	857	Putative disease resistan	yes	no	0.601	0.121	0.324	4e-09
Q9STE7	847	Putative disease resistan	no	no	0.791	0.161	0.269	2e-08
Q39214	926	Disease resistance protei	no	no	0.965	0.180	0.237	5e-07
O04093	727	Putative inactive disease	no	no	0.468	0.111	0.320	5e-07
A7XGN8	910	Disease susceptibility pr	no	no	0.468	0.089	0.320	7e-07
Q80ZI6	727	E3 ubiquitin-protein liga	yes	no	0.549	0.130	0.324	2e-06
Q6UWE0	723	E3 ubiquitin-protein liga	yes	no	0.543	0.130	0.327	3e-06
Q9XIF0	906	Putative disease resistan	no	no	0.687	0.131	0.292	9e-06
P59584	910	Disease resistance protei	no	no	0.583	0.110	0.330	1e-05
Q9C646	899	Probable disease resistan	no	no	0.635	0.122	0.278	2e-05

>sp|Q9SX38|DRL4_ARATH Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=3 SV=2

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 75/148 (50%), Gaps = 44/148 (29%)

Query: 2   ELIERSMV---------QPIKTIQVHDLLRELAISKAKEDRFLDIIH---EDSNARFLA- 48
           EL++RSMV           + T ++HDL+RE+ + KAK++ F+ +I    +D    F++ 
Sbjct: 478 ELVKRSMVMVGRRDIVTSEVMTCRMHDLMREVCLQKAKQESFVQVIDSRDQDEAEAFISL 537

Query: 49  -----------------------------KECRLLQVLDLEGVYM--ALLDSSVGNLIHL 77
                                        ++ +LL+VLDLEG  +    L   VG+LIHL
Sbjct: 538 STNTSRRISVQLHGGAEEHHIKSLSQVSFRKMKLLRVLDLEGAQIEGGKLPDDVGDLIHL 597

Query: 78  RYLDLRKTWLKKLPSSMGNLFNLQSLDL 105
           R L +R T +K+L SS+GNL  + +LDL
Sbjct: 598 RNLSVRLTNVKELTSSIGNLKLMITLDL 625

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE7|R13L3_ARATH Putative disease resistance RPP13-like protein 3 OS=Arabidopsis thaliana GN=RPP13L3 PE=3 SV=1

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/204 (26%), Positives = 91/204 (44%), Gaps = 67/204 (32%)

Query: 2   ELIERSMVQP-------IKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAK----- 49
           EL++RS+V+        + + ++HDLLR+LAI KAKE  F+++ +E  ++  + +     
Sbjct: 466 ELVDRSLVKAERIERGKVMSCRIHDLLRDLAIKKAKELNFVNVYNEKQHSSDICRREVVH 525

Query: 50  -------------------------------------ECRLLQVLDLEGVYMA------L 66
                                                + +LL+VL++EG+          
Sbjct: 526 HLMNDYYLCDRRVNKRMRSFLFIGERRGFGYVNTTNLKLKLLRVLNMEGLLFVSKNISNT 585

Query: 67  LDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLS-------STLVDPIPLLKHV 119
           L   +G LIHLRYL +  T++  LP+S+ NL  LQ+LD S       +T +  +  L+HV
Sbjct: 586 LPDVIGELIHLRYLGIADTYVSILPASISNLRFLQTLDASGNDPFQYTTDLSKLTSLRHV 645

Query: 120 CFNEFREMVVNPPVEASLPNLQKL 143
                 E ++   V     NLQ L
Sbjct: 646 IGKFVGECLIGEGV-----NLQTL 664

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/219 (23%), Positives = 94/219 (42%), Gaps = 52/219 (23%)

Query: 2   ELIERSMVQPI--------KTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKE--- 50
           EL+ R+M+Q I        K  ++HD++ E+A+S +K +RF D+ ++DS+    A+    
Sbjct: 480 ELVYRNMLQVILWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMEN 539

Query: 51  ------C----------------------------------RLLQVLDLEGVYMALLDSS 70
                 C                                   LL+ LDLE   ++ L   
Sbjct: 540 YGSRHLCIQKEMTPDSIRATNLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDC 599

Query: 71  VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVN 130
           +  + +L+YL+L KT +K+LP +   L NL++L+   + ++ +P L      + R ++  
Sbjct: 600 LVTMFNLKYLNLSKTQVKELPKNFHKLVNLETLNTKHSKIEELP-LGMWKLKKLRYLITF 658

Query: 131 PPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNIRVE 169
              E    N   ++GT +V    +   LQ +   N   E
Sbjct: 659 RRNEGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDE 697

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|O04093|LOV1A_ARATH Putative inactive disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=5 SV=3

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 53/134 (39%)

Query: 13  KTIQVHDLLRELAISKAKEDRFLDIIHEDS-----NARFLAKECRL-------------- 53
           K  Q+HD++RE+ +SKAKE+ FL+I    +     NAR L+K  RL              
Sbjct: 370 KHCQMHDMMREVCLSKAKEENFLEIFKVSTATSAINARSLSKSRRLSVHGGNALPSLGQT 429

Query: 54  --------------------------------LQVLDLEGVYM--ALLDSSVGNLIHLRY 79
                                           L+VLDL  V      L SS+G+LIHLR+
Sbjct: 430 INKKVRSLLYFAFEDEFCILESTTPCFRSLPLLRVLDLSRVKFEGGKLPSSIGDLIHLRF 489

Query: 80  LDLRKTWLKKLPSS 93
           L L + W+  LPSS
Sbjct: 490 LSLHRAWISHLPSS 503

Arabidopsis thaliana (taxid: 3702)

>sp|A7XGN8|LOV1B_ARATH Disease susceptibility protein LOV1 OS=Arabidopsis thaliana GN=LOV1 PE=1 SV=1

 Score = 53.5 bits (127), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 53/134 (39%)

Query: 13  KTIQVHDLLRELAISKAKEDRFLDIIHEDS-----NARFLAKECRL-------------- 53
           K  Q+HD++RE+ +SKAKE+ FL+I    +     NAR L+K  RL              
Sbjct: 495 KHCQMHDMMREVCLSKAKEENFLEIFKVSTATSAINARSLSKSRRLSVHGGNALQSLGQT 554

Query: 54  --------------------------------LQVLDLEGVYM--ALLDSSVGNLIHLRY 79
                                           L+VLDL  V      L SS+G+LIHLR+
Sbjct: 555 INKKVRSLLYFAFEDEFCILESTTPCFRSLPLLRVLDLSRVKFEGGKLPSSIGDLIHLRF 614

Query: 80  LDLRKTWLKKLPSS 93
           L L + W+  LPSS
Sbjct: 615 LSLHRAWISHLPSS 628

Confers susceptibility to the fungus Cochliobolus victoriae by conditioning victorin-dependent (victorin is a toxin synthesized by C.victoriae) induction of defense-associated proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q80ZI6|LRSM1_MOUSE E3 ubiquitin-protein ligase LRSAM1 OS=Mus musculus GN=Lrsam1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 61/114 (53%), Gaps = 19/114 (16%)

Query: 53  LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDP 112
           +LQVL++E   +  L  S+GNL+ L+ L+++   LK+LP ++G L +L++LD+S   +  
Sbjct: 105 VLQVLNVERNQLTHLPRSIGNLLQLQTLNVKDNKLKELPDTLGELRSLRTLDISENEIQR 164

Query: 113 IP-LLKHVCFNEFREM----VVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFL 161
           +P +L HV   E   +    +V PP E              VC +G  +  QFL
Sbjct: 165 LPQMLAHVRTLETLSLNALAMVYPPPE--------------VCGAGTAAVQQFL 204

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) cargos.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 19/113 (16%)

Query: 54  LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI 113
           LQVL++E   +  L  S+GNL  L+ L+++   LK+LP ++G L +L++L++S   +  +
Sbjct: 106 LQVLNVERNQLMQLPRSIGNLTQLQTLNVKDNKLKELPDTVGELRSLRTLNISGNEIQRL 165

Query: 114 P-LLKHVCFNEF----REMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFL 161
           P +L HV   E        +V PP E              VC +G  + LQFL
Sbjct: 166 PQMLAHVRTLEMLSLDASAMVYPPRE--------------VCGAGTAAILQFL 204

E3 ubiquitin-protein ligase that mediates monoubiquitination of TSG101 at multiple sites, leading to inactivate the ability of TSG101 to sort endocytic (EGF receptors) and exocytic (HIV-1 viral proteins) cargos.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 69/188 (36%)

Query: 2   ELIERSMV--------QPIKTIQVHDLLRELAISKAKEDRFLDIIHEDSN---------- 43
           EL++R+MV           +  Q+HDL+RE+ + KAKE+ FL I+ + ++          
Sbjct: 467 ELVKRNMVISERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPTSSSSVHSLASS 526

Query: 44  ----------------------------------ARFLAK----ECRLLQVLDLEGVYM- 64
                                             +RF       E  LL+VLDL+G    
Sbjct: 527 RSRRLVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSMGSNFIELPLLRVLDLDGAKFK 586

Query: 65  -ALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDL---SSTLVDPIPLLKHVC 120
              L SS+G LIHL+YL L +  +  LPSS+ NL +L  L+L   S  L++ +P      
Sbjct: 587 GGKLPSSIGKLIHLKYLSLYQASVTYLPSSLRNLKSLLYLNLRINSGQLIN-VP------ 639

Query: 121 FNEFREMV 128
            N F+EM+
Sbjct: 640 -NVFKEML 646

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P59584|RP8HA_ARATH Disease resistance protein RPH8A OS=Arabidopsis thaliana GN=RPH8A PE=3 SV=1

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 63/133 (47%), Gaps = 32/133 (24%)

Query: 12  IKTIQVHDLLRELAISKAKEDRFLDIIHEDS-----NARFLAKECRL------------- 53
           IK  Q+HD++RE+ +SKAKE+ FL II + +     NA+  ++  RL             
Sbjct: 489 IKNCQMHDMMREVCLSKAKEENFLQIIKDPTCTSTINAQSPSRSRRLSIHSGKAFHILGH 548

Query: 54  --------LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLK----KLPSSMGNLFNLQ 101
                   L V   E  +     S   NL  LR LDL  +W+K    KLP S+G L +L+
Sbjct: 549 KRNAKVRSLIVSRFEEDFWIRSASVFHNLTLLRVLDL--SWVKFEGGKLPCSIGGLIHLR 606

Query: 102 SLDLSSTLVDPIP 114
            L L   +V  +P
Sbjct: 607 YLRLYGAVVSHLP 619

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. In contrast to RPP8, it does not specifically recognize the Emco5 avirulence protein from Hyaloperonospora parasitica.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C646|RX24L_ARATH Probable disease resistance protein RXW24L OS=Arabidopsis thaliana GN=RXW24L PE=2 SV=1

 Score = 48.5 bits (114), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 68/169 (40%), Gaps = 59/169 (34%)

Query: 2   ELIERSMV--------QPIKTIQVHDLLRELAISKAKEDRFLDIIHEDS----------- 42
           EL+ R+MV           +T ++HD++RE+ + KAKE+ FL I+   S           
Sbjct: 470 ELVRRNMVISERDVMTSRFETCRLHDMMREICLFKAKEENFLQIVSNHSPTSNPQTLGAS 529

Query: 43  ---------------------------------NARFLAK-----ECRLLQVLDLEGVYM 64
                                            N R++         +LL+VLDL     
Sbjct: 530 RRFVLHNPTTLHVERYKNNPKLRSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKF 589

Query: 65  --ALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVD 111
               L S +G LIHLRYL L+   +  LPSS+ NL  L  LD+ +   D
Sbjct: 590 KGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLLIYLDIRTDFTD 638

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
359491404	922	PREDICTED: probable disease resistance R	0.947	0.177	0.444	3e-35
297734140	965	unnamed protein product [Vitis vinifera]	0.710	0.127	0.436	3e-23
358348350	2223	NBS-containing resistance-like protein [	0.653	0.050	0.359	4e-16
357456255	1160	NBS-containing resistance-like protein [	0.653	0.097	0.359	5e-16
359489148	897	PREDICTED: probable disease resistance R	0.653	0.125	0.349	3e-15
359496848	856	PREDICTED: disease resistance RPP8-like	0.815	0.164	0.328	1e-14
147766035	902	hypothetical protein VITISV_038742 [Viti	0.815	0.156	0.328	1e-14
296083983	603	unnamed protein product [Vitis vinifera]	0.606	0.174	0.426	3e-14
358345419	797	NBS-containing resistance-like protein,	0.658	0.143	0.333	4e-14
297744820	807	unnamed protein product [Vitis vinifera]	0.653	0.140	0.337	4e-14

>gi|359491404|ref|XP_002274414.2| PREDICTED: probable disease resistance RPP8-like protein 2-like [Vitis vinifera]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/218 (44%), Positives = 125/218 (57%), Gaps = 54/218 (24%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLDIIHED------SNARFL 47
           EL+ RSM+Q         IKT  VHDLL EL++SK KED+FLDIIH +      +  R L
Sbjct: 484 ELVGRSMIQVATRKSNGRIKTCCVHDLLHELSVSKGKEDQFLDIIHGEFTVSSLTRVRRL 543

Query: 48  A-------------------------------KECRLLQVLDLEGVYMALLDSSVGNLIH 76
           A                               ++ +LL++LDLEGVY++ L SS+GNLIH
Sbjct: 544 AIHLGVPPTTKNTSKVRSLLCFDICEPSFQELRKFKLLRILDLEGVYISRLHSSIGNLIH 603

Query: 77  LRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPL-------LKHVCFNEFREMVV 129
           LRYL LR TWLKKLP S+  L NLQ+LDL STL++PIP+       L+H+ FNE  EM V
Sbjct: 604 LRYLGLRGTWLKKLPPSIQFLLNLQTLDLRSTLLNPIPIVIWKMQKLRHLYFNELEEMAV 663

Query: 130 NPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNIR 167
           NPP +ASL NLQ L G  +  +   +      KL+N+R
Sbjct: 664 NPPTDASLANLQTLHG--ICINQTSYVENGLSKLTNLR 699

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734140|emb|CBI15387.3| unnamed protein product [Vitis vinifera]

 Score =  113 bits (283), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 92/165 (55%), Gaps = 42/165 (25%)

Query: 49  KECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST 108
           ++ +LL++LDLEGVY++ L SS+GNLIHLRYL LR TWLKKLP S+  L NLQ+LDL ST
Sbjct: 337 RKFKLLRILDLEGVYISRLHSSIGNLIHLRYLGLRGTWLKKLPPSIQFLLNLQTLDLRST 396

Query: 109 LVDPIPL-------LKHVCFNEFREMVVNPP------------VEASLPN---------- 139
           L++PIP+       L+H+ FNE  EM ++               E SL            
Sbjct: 397 LLNPIPIVIWKMQKLRHLYFNELEEMALHTRDLFDAEYFPQNLTELSLKGSFLMEDPMVK 456

Query: 140 ---LQKL----------IGTEMVCSSGRFSHLQFLKLSNIRVEER 171
              LQ L          +G EM+CS G F  L FLKLS +   ER
Sbjct: 457 LEMLQSLRVLKLKHSAYLGKEMICSCGGFPQLHFLKLSFLNTVER 501

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358348350|ref|XP_003638210.1| NBS-containing resistance-like protein [Medicago truncatula] gi|355504145|gb|AES85348.1| NBS-containing resistance-like protein [Medicago truncatula]

 Score = 89.4 bits (220), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 51/164 (31%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNA--------- 44
           ELI+RS+VQ         ++T QVHDL+REL I K K+  F   +HEDS +         
Sbjct: 485 ELIQRSLVQVSNVGFEGKVQTCQVHDLMRELIIRKMKDLNFGHCMHEDSESVALGRTRRL 544

Query: 45  -------------------------------RFLAKEC---RLLQVLDLEGVYMALLDSS 70
                                           F+ K C   R+L+VLD++G  +  +  +
Sbjct: 545 SIATNPNNVFRSTNNLQFRAIYVFEEDGSLEHFMGKVCSQSRILKVLDIQGTSLNHIPKN 604

Query: 71  VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114
           +GNL HLRY++LR T +K LP S+G L NL++LDL  TLV  IP
Sbjct: 605 LGNLFHLRYINLRNTNVKALPKSIGELHNLETLDLRETLVHEIP 648

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456255|ref|XP_003598408.1| NBS-containing resistance-like protein [Medicago truncatula] gi|355487456|gb|AES68659.1| NBS-containing resistance-like protein [Medicago truncatula]

 Score = 89.4 bits (220), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 51/164 (31%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNA--------- 44
           ELI+RS+VQ         ++T QVHDL+REL I K K+  F   +HEDS +         
Sbjct: 485 ELIQRSLVQVSNVGFEGKVQTCQVHDLMRELIIRKMKDLNFGHCMHEDSESVALGRTRRL 544

Query: 45  -------------------------------RFLAKEC---RLLQVLDLEGVYMALLDSS 70
                                           F+ K C   R+L+VLD++G  +  +  +
Sbjct: 545 SIATNPNNVFRSTNNLQFRAIYVFEEDGSLEHFMGKVCSQSRILKVLDIQGTSLNHIPKN 604

Query: 71  VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114
           +GNL HLRY++LR T +K LP S+G L NL++LDL  TLV  IP
Sbjct: 605 LGNLFHLRYINLRNTNVKALPKSIGELHNLETLDLRETLVHEIP 648

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489148|ref|XP_003633887.1| PREDICTED: probable disease resistance RPP8-like protein 4-like [Vitis vinifera]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 50/163 (30%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLD----------------I 37
           EL+ RSM+Q         + + ++HDLLR+LAIS+AK+ +F +                 
Sbjct: 458 ELVHRSMIQVAARSFDGRVMSCRMHDLLRDLAISEAKDTKFFEGYESIDSTSPVSVRRLT 517

Query: 38  IHEDSNA--------------------------RFLAKECRLLQVLDLEGVYMALLDSSV 71
           IH+                              R L +  +LL VLDLEG+ +  +   +
Sbjct: 518 IHQGKKTNSKHLHTSRSLRSFICFSVCFQKNSLRSLHRRVKLLTVLDLEGMTINTIPEGI 577

Query: 72  GNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114
           G LIHL+YL LR+T +K+LPSS+G L NLQ+LD  STL++ IP
Sbjct: 578 GELIHLKYLCLRRTRIKRLPSSIGRLTNLQTLDFRSTLIEIIP 620

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496848|ref|XP_002269653.2| PREDICTED: disease resistance RPP8-like protein 3-like [Vitis vinifera]

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 63/204 (30%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLDIIHEDS----------- 42
           EL++RSM+Q         IK  ++HDLLR+LA+S+AKE +FL+I+   +           
Sbjct: 430 ELVDRSMIQVAEKRYNGKIKACRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARR 489

Query: 43  ----------------NARF--------------------LAKECRLLQVLDLEGVYMAL 66
                           N  F                    L +  +LL+VLDLE V    
Sbjct: 490 ISVHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRRDQWKSLFESLKLLRVLDLERVQTHA 549

Query: 67  LDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPL-------LKHV 119
           L   +  L+HLRYL LR+T L++LPSS+ N  NLQ+LD+ +T V  +P+       L+H+
Sbjct: 550 LPKEIRELVHLRYLGLRRTGLQRLPSSIQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHL 609

Query: 120 CFNEFREMVVNPPVEASLPNLQKL 143
            + E   +  +PPV  S+ +LQ L
Sbjct: 610 -YLEKTSIAGHPPVHVSVMHLQTL 632

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766035|emb|CAN70214.1| hypothetical protein VITISV_038742 [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 100/204 (49%), Gaps = 63/204 (30%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLDIIHEDS----------- 42
           EL++RSM+Q         IK  ++HDLLR+LA+S+AKE +FL+I+   +           
Sbjct: 476 ELVDRSMIQVAEKRYNGKIKMCRIHDLLRDLAMSEAKECKFLEILDSTNIDTSVTTRARR 535

Query: 43  ----------------NARF--------------------LAKECRLLQVLDLEGVYMAL 66
                           N  F                    L +  +LL+VLDLE V    
Sbjct: 536 ISVHSSLEEYMKLRHPNPHFRSMLHFSRCEESLRREQWKSLFESLKLLRVLDLERVQTHA 595

Query: 67  LDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPL-------LKHV 119
           L   +  L+HLRYL LR+T L++LPSS+ N  NLQ+LD+ +T V  +P+       L+H+
Sbjct: 596 LPKEIRELVHLRYLGLRRTGLQRLPSSVQNFCNLQTLDIRATKVSRLPIQLWNMPGLRHL 655

Query: 120 CFNEFREMVVNPPVEASLPNLQKL 143
            + E   +  +PPV  S+ +LQ L
Sbjct: 656 -YLEKTSIAGHPPVHVSVMHLQTL 678

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083983|emb|CBI24371.3| unnamed protein product [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 17/122 (13%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNARFLAKECRL 53
           ELI RS+VQ         I++ +VHDL+RE+ + KA+E          S  R      +L
Sbjct: 263 ELIHRSLVQLSYVDYRGKIRSCRVHDLMREIILRKAEEL---------SLCRTFLANFKL 313

Query: 54  LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI 113
           L+VLD E   +  +   +GNL HLRYL LR+T +K LP S+G L NLQ+LDL  +LVD +
Sbjct: 314 LKVLDFEKAPLYSVPEDLGNLFHLRYLSLRRTKVKMLPKSIGKLQNLQTLDLKHSLVDAL 373

Query: 114 PL 115
           P+
Sbjct: 374 PV 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345419|ref|XP_003636776.1| NBS-containing resistance-like protein, partial [Medicago truncatula] gi|355502711|gb|AES83914.1| NBS-containing resistance-like protein, partial [Medicago truncatula]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 82/165 (49%), Gaps = 51/165 (30%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLDIIHEDSNA--------- 44
           ELI RS+VQ         ++T QVHDLLRE+ I K K+  F   +HE+S +         
Sbjct: 471 ELIHRSLVQVSNVGFEGKVQTCQVHDLLREVIIRKMKDLTFCHCVHENSESIVVVKTRRL 530

Query: 45  -------------------------------RFLAKEC---RLLQVLDLEGVYMALLDSS 70
                                           F+ K C   ++L+VLD++G  +  +  +
Sbjct: 531 SITTSPSNVLKSTDNSHFRAIHVFEKGGSLEHFMGKLCSQSKILKVLDIQGTSLNHIPKN 590

Query: 71  VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPL 115
           +GNL HLRY++LR T ++ LP S+G L NL++LDL  TLV  +P+
Sbjct: 591 LGNLFHLRYINLRNTKVEALPKSVGELQNLETLDLRETLVHELPI 635

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744820|emb|CBI38088.3| unnamed protein product [Vitis vinifera]

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 50/163 (30%)

Query: 2   ELIERSMVQ--------PIKTIQVHDLLRELAISKAKEDRFLD----------------I 37
           EL+ RSM+Q         + + ++HDLLR+LAIS+AK+ +F +                 
Sbjct: 345 ELVHRSMIQVADKSFDGRVMSCRMHDLLRDLAISEAKDTKFFEGYESIDSTSPVSVRRLT 404

Query: 38  IHEDSNA--------------------------RFLAKECRLLQVLDLEGVYMALLDSSV 71
           IH+                              R L +  +LL VLDLEG+ +  +   +
Sbjct: 405 IHQGKKTNSKHLHTSRSLRSFICFSVCFQKNILRSLHRRVKLLTVLDLEGMTINTIPEGI 464

Query: 72  GNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114
           G LIHL+YL L++T +K+LPSS+G L NLQ+LD  ST ++ IP
Sbjct: 465 GELIHLKYLCLKRTRIKRLPSSIGRLTNLQTLDFRSTSIEIIP 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.410	0.078	0.435	9.6e-10
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.664	0.127	0.314	2.3e-09
TAIR|locus:504956186	1138	AT1G58602 [Arabidopsis thalian	0.526	0.079	0.353	4.9e-08
UNIPROTKB|E2RR59	728	LRSAM1 "Uncharacterized protei	0.566	0.134	0.349	1.6e-07
UNIPROTKB|J9P525	728	LRSAM1 "Uncharacterized protei	0.566	0.134	0.349	1.6e-07
UNIPROTKB|F1RS16	723	LRSAM1 "Uncharacterized protei	0.381	0.091	0.432	3.3e-07
TAIR|locus:2037639	907	AT1G58390 "AT1G58390" [Arabido	0.312	0.059	0.5	4.9e-07
DICTYBASE|DDB_G0294094	510	lrrA "leucine-rich repeat-cont	0.676	0.229	0.322	6.7e-07
UNIPROTKB|Q08E63	724	LRSAM1 "Uncharacterized protei	0.566	0.135	0.339	1.1e-06
TAIR|locus:2197409	727	LOV1 "LOCUS ORCHESTRATING VICT	0.774	0.184	0.319	1.1e-06

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 9.6e-10, Sum P(3) = 9.6e-10
 Identities = 34/78 (43%), Positives = 43/78 (55%)

Query:    53 LLQVLDLEGVYM--ALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLV 110
             LL+VLDL  V      L  S+G LIHLRYL L +  +  LPS+M NL  L  L+L     
Sbjct:   577 LLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLNLRVDTE 636

Query:   111 DPIPLLKHVCFNEFREMV 128
             +PI    HV  N  +EM+
Sbjct:   637 EPI----HVP-NVLKEMI 649

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
 Identities = 40/127 (31%), Positives = 62/127 (48%)

Query:    33 RFLDIIHED-SNARFLAK-----ECRLLQVLDL-EGVYMA-LLDSSVGNLIHLRYLDLRK 84
             R L ++++D  N R++         +LL+VLDL +  +    L S +G LIHLRYL L+ 
Sbjct:   552 RSLVVVYDDIGNRRWMLSGSIFTRVKLLRVLDLVQAKFKGGKLPSDIGKLIHLRYLSLKD 611

Query:    85 TWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREM----VVNPPVEASLPNL 140
               +  LPSS+ NL  L  LD+ +   D       +   E R +     ++   +  L NL
Sbjct:   612 AKVSHLPSSLRNLVLLIYLDIRTDFTDIFVPNVFMGMRELRYLELPRFMHEKTKLELSNL 671

Query:   141 QKLIGTE 147
             +KL   E
Sbjct:   672 EKLEALE 678

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:504956186 AT1G58602 [Arabidopsis thaliana (taxid:3702)]

 Score = 93 (37.8 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
 Identities = 35/99 (35%), Positives = 48/99 (48%)

Query:    53 LLQVLDLEGVYM--ALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLV 110
             LL+VLDL    +    L S +G LIHLRYL L    +  +P S+GNL  L  L+L  +L 
Sbjct:   583 LLRVLDLVQAKLKGGKLASCIGKLIHLRYLSLEYAEVTHIPYSLGNLKLLIYLNLHISLS 642

Query:   111 DPIPLLKHVCFN--EFREMVVNPPVEAS----LPNLQKL 143
                  + +V     E R + +   +E      L NL KL
Sbjct:   643 SRSNFVPNVLMGMQELRYLALPSLIERKTKLELSNLVKL 681

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|E2RR59 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 37/106 (34%), Positives = 59/106 (55%)

Query:    54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI 113
             LQVL++E   +  L  S+GNLI L+ L+++   LK+LP ++G L +L++LD+S+  +  +
Sbjct:   106 LQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELPDTVGELRSLRTLDISNNEIQRL 165

Query:   114 P-LLKHV----CFNEFREMVVNPPVEASLPNLQKLIGTEMVCS-SG 153
             P LL HV      N     +V PP E      Q +   + +C  SG
Sbjct:   166 PQLLAHVRTLETLNLDASSMVYPPQEVCSAGTQAI--QQFLCKESG 209

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P525 LRSAM1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 131 (51.2 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 37/106 (34%), Positives = 59/106 (55%)

Query:    54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI 113
             LQVL++E   +  L  S+GNLI L+ L+++   LK+LP ++G L +L++LD+S+  +  +
Sbjct:   106 LQVLNVEKNQLTYLPRSIGNLIQLQTLNMKDNKLKELPDTVGELRSLRTLDISNNEIQRL 165

Query:   114 P-LLKHV----CFNEFREMVVNPPVEASLPNLQKLIGTEMVCS-SG 153
             P LL HV      N     +V PP E      Q +   + +C  SG
Sbjct:   166 PQLLAHVRTLETLNLDASSMVYPPQEVCSAGTQAI--QQFLCKESG 209

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RS16 LRSAM1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 128 (50.1 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 29/67 (43%), Positives = 45/67 (67%)

Query:    54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI 113
             LQVL++E   +  L  S+GNLI L+ L+L+   LK+LP ++G L +L++LD+S   V  +
Sbjct:   106 LQVLNVERNQLTSLPRSIGNLIQLQTLNLKDNKLKELPDTLGELRSLRTLDISDNKVQRL 165

Query:   114 P-LLKHV 119
             P +L HV
Sbjct:   166 PQMLAHV 172

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2037639 AT1G58390 "AT1G58390" [Arabidopsis thaliana (taxid:3702)]

 Score = 107 (42.7 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
 Identities = 28/56 (50%), Positives = 37/56 (66%)

Query:    52 RLLQVLDLEGV-YMAL-LDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDL 105
             +LL+VLDL  V +  + L   +GNLIHLRYL L+   +  LPSS+GNL  L  L+L
Sbjct:   584 KLLRVLDLFYVDFEGMKLPFGIGNLIHLRYLSLQDAKVSHLPSSLGNLMLLIYLNL 639

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

DICTYBASE|DDB_G0294094 lrrA "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 126 (49.4 bits), Expect = 6.7e-07, P = 6.7e-07
 Identities = 41/127 (32%), Positives = 63/127 (49%)

Query:    54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLR--KTWLKKLPSSMGNLFNLQSLDLSSTLVD 111
             LQ LDL G  M ++   VGNLI+L+ LDLR  K  +  +PS +G L NL+ L LS+ L+ 
Sbjct:   295 LQKLDLFGNNMRIVPREVGNLINLQTLDLRQNKLTIDNIPSEIGKLVNLKKLLLSNNLLI 354

Query:   112 PIP--LLKHVCFNEFR----EMVVNPPVEASLPNLQK--LIGTEMVCSSGRFSHLQFLKL 163
              +P  +       EF     ++   P     L  L K  L G ++      F +L  L++
Sbjct:   355 ALPPEIASMKALKEFEASNNQLQAIPTEIGELSGLTKINLSGNKLTSIPASFGNLSELQI 414

Query:   164 SNIRVEE 170
              +++  E
Sbjct:   415 CDLKSNE 421

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IMP

GO:0043326 "chemotaxis to folate" evidence=IMP

GO:0031589 "cell-substrate adhesion" evidence=IMP

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0031152 "aggregation involved in sorocarp development" evidence=IMP

GO:0030833 "regulation of actin filament polymerization" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q08E63 LRSAM1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 37/109 (33%), Positives = 60/109 (55%)

Query:    54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI 113
             LQVL++E   +  L  S+GNLI L+ L+++   LK+LP ++G L +L++LD+S   +  +
Sbjct:   106 LQVLNMERNQLTYLPRSIGNLIQLQTLNVKDNRLKELPDTLGELRSLRTLDISENEIQRL 165

Query:   114 P-LLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFL 161
             P +L HV     R +        SL  L  +   + VC +G  +  QFL
Sbjct:   166 PRMLAHV-----RTLET-----LSLDALSMVYPPQEVCGAGTEAIQQFL 204

GO:0005737 "cytoplasm" evidence=ISS

GO:0046755 "non-lytic virus budding" evidence=ISS

GO:0044425 "membrane part" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0070086 "ubiquitin-dependent endocytosis" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

GO:0045806 "negative regulation of endocytosis" evidence=ISS

GO:0030163 "protein catabolic process" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197409 LOV1 "LOCUS ORCHESTRATING VICTORIN EFFECTS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.1e-06, P = 1.1e-06
 Identities = 46/144 (31%), Positives = 75/144 (52%)

Query:    29 AKEDRFLDIIHEDSNARFLAKECRLLQVLDLEGVYM--ALLDSSVGNLIHLRYLDLRKTW 86
             A ED F   I E +   F  +   LL+VLDL  V      L SS+G+LIHLR+L L + W
Sbjct:   441 AFEDEFC--ILESTTPCF--RSLPLLRVLDLSRVKFEGGKLPSSIGDLIHLRFLSLHRAW 496

Query:    87 LKKLPSSMGNLFNLQSLDLSSTLVDPIP-LLKHVCFNEFREMVVNPPVEASLPNLQKLIG 145
             +  LPSS+ NL  L  L+L    +  +P +LK +    + ++ ++   +  L  L  L+ 
Sbjct:   497 ISHLPSSLRNLKLLLYLNLGFNGMVHVPNVLKEMQELRYLQLPMSMHDKTKL-ELSDLVN 555

Query:   146 TEMVCS-SGRF-SHLQFLKLSNIR 167
              E + + S ++ S +  L ++ +R
Sbjct:   556 LESLMNFSTKYASVMDLLHMTKLR 579

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.47
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.45
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.32
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.3
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.26
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.06
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.99
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.93
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.9
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.83
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.82
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.71
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.58
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.57
PLN03150	623	hypothetical protein; Provisional	98.55
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.54
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.51
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.48
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.46
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.45
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.41
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.37
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.35
PLN03150	623	hypothetical protein; Provisional	98.34
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.3
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.29
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.17
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.16
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.97
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.95
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.84
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.78
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.7
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.7
PRK15386	426	type III secretion protein GogB; Provisional	97.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.66
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.57
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.2
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.16
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.05
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.98
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.71
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.58
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.36
PRK15386	426	type III secretion protein GogB; Provisional	96.28
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.13
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.01
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.91
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.36
smart00370	26	LRR Leucine-rich repeats, outliers.	93.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.98
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.57
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	90.99
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.16
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.55
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.24
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	82.0

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=2.5e-17  Score=114.57  Aligned_cols=121  Identities=26%  Similarity=0.336  Sum_probs=111.5

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCC--CCCC-------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLV--DPIP-------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~--~~lp-------~L  116 (173)
                      |.++++.+|++|++.+|+++++|.+++++++|+.|+++.|++..+|..|+.++.|+.|++++|++  ..+|       .|
T Consensus        50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl  129 (264)
T KOG0617|consen   50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL  129 (264)
T ss_pred             CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence            77999999999999999999999999999999999999999999999999999999999999965  4466       78


Q ss_pred             eEEEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      +.|+++.|.+.  -+|.. +.+++|+.|.+     -++|.+++.+.+|++|.+.+.+-
T Consensus       130 ralyl~dndfe--~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  130 RALYLGDNDFE--ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             HHHHhcCCCcc--cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            99999999998  88988 99999999998     56899999999999999887653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.47  E-value=8e-14  Score=119.64  Aligned_cols=163  Identities=28%  Similarity=0.306  Sum_probs=118.3

Q ss_pred             cccccCCccc-c-----ceeEeCHHHHHHHHHhcc-----ccceEeecCCCCc-c---------C------------ccc
Q 047314            2 ELIERSMVQP-I-----KTIQVHDLLRELAISKAK-----EDRFLDIIHEDSN-A---------R------------FLA   48 (173)
Q Consensus         2 ~l~~r~l~~~-~-----~~~~~h~~~~~~~~~~~~-----~~~~~~~~~~~~~-~---------r------------~~~   48 (173)
                      +||.|+|++. .     .+|+|||+++++|.++++     +++.+...+.... .         |            +.-
T Consensus       462 ~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~  541 (889)
T KOG4658|consen  462 ELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS  541 (889)
T ss_pred             HHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC
Confidence            6889999988 2     899999999999999999     6665555431111 1         1            333


Q ss_pred             cCCCcccEEEecCcc--cccchhh-hCCCCCCcEEeccCCc-ccccCccccCCCCccEEEecCCCCCCCC-------cce
Q 047314           49 KECRLLQVLDLEGVY--MALLDSS-VGNLIHLRYLDLRKTW-LKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLK  117 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~--l~~~~~~-~~~l~~L~~l~l~~~~-~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~  117 (173)
                      ...++|++|-+.+|.  +..++.. |..++.|+.||+++|. +..+|..++.+-+|++|+++++.+..+|       .|.
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI  621 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence            445578888888886  4555444 6678999999998765 5689999999999999999999998888       788


Q ss_pred             EEEeeceeccccCCCCC-CCccccceeec--------cccccccCCCCCcCEEEEec
Q 047314          118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG--------TEMVCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l--------~~~~~~l~~l~~L~~L~l~~  165 (173)
                      +|++..+.... .+|.. ..+.+|++|.+        .....++..+++|+.+.+..
T Consensus       622 ~Lnl~~~~~l~-~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~  677 (889)
T KOG4658|consen  622 YLNLEVTGRLE-SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI  677 (889)
T ss_pred             eeccccccccc-cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence            88888776553 44455 67889999888        22333455566666555543

>PLN03210 Resistant to P

Probab=99.45  E-value=3.5e-13  Score=119.50  Aligned_cols=164  Identities=21%  Similarity=0.270  Sum_probs=98.0

Q ss_pred             cccccCCccc-cceeEeCHHHHHHHHHhccccc-------eEeec-------CCCCcc-------------------Ccc
Q 047314            2 ELIERSMVQP-IKTIQVHDLLRELAISKAKEDR-------FLDII-------HEDSNA-------------------RFL   47 (173)
Q Consensus         2 ~l~~r~l~~~-~~~~~~h~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~-------------------r~~   47 (173)
                      .|+++|||+. ..++.|||++++||.++++++.       +....       .....+                   +.+
T Consensus       474 ~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~a  553 (1153)
T PLN03210        474 NLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENA  553 (1153)
T ss_pred             HHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHH
Confidence            6899999988 7889999999999999986542       11110       000000                   145


Q ss_pred             ccCCCcccEEEecCcc------cc-cchhhhCC-----------------------CCCCcEEeccCCcccccCccccCC
Q 047314           48 AKECRLLQVLDLEGVY------MA-LLDSSVGN-----------------------LIHLRYLDLRKTWLKKLPSSMGNL   97 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~------l~-~~~~~~~~-----------------------l~~L~~l~l~~~~~~~~p~~l~~l   97 (173)
                      |.+|++|+.|.+..+.      +. .+|+.+..                       ..+|+.|+++++.+..++..+..+
T Consensus       554 F~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l  633 (1153)
T PLN03210        554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSL  633 (1153)
T ss_pred             HhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccC
Confidence            7777777777765432      11 23333333                       345555555555555555555666


Q ss_pred             CCccEEEecCC-CCCCCC------cceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEE
Q 047314           98 FNLQSLDLSST-LVDPIP------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKL  163 (173)
Q Consensus        98 ~~L~~L~l~~~-~~~~lp------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l  163 (173)
                      ++|+.++++++ .++.+|      +|+.|++.+|.... .+|.. +.+++|+.|++      +.+|..+ ++++|+.|++
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~L  711 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNL  711 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeC
Confidence            66666666655 244443      56666666654333 56666 66667777666      3344443 5667777777


Q ss_pred             ecee
Q 047314          164 SNIR  167 (173)
Q Consensus       164 ~~~~  167 (173)
                      ++|.
T Consensus       712 sgc~  715 (1153)
T PLN03210        712 SGCS  715 (1153)
T ss_pred             CCCC
Confidence            6664

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.32  E-value=3.2e-12  Score=111.83  Aligned_cols=118  Identities=27%  Similarity=0.293  Sum_probs=49.5

Q ss_pred             ccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------cce
Q 047314           48 AKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------LLK  117 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------~L~  117 (173)
                      ++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|+.|++++|.+. .+|       +|+
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  239 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN  239 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence            334444444444444443 34444444444444444444433 33444444444444444444322 122       444


Q ss_pred             EEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEece
Q 047314          118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      +|++++|.+.+ .+|.. +++++|+.|++      +..|..+.++++|+.|+++++
T Consensus       240 ~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        240 HLDLVYNNLTG-PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             EEECcCceecc-ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            44444444443 33333 44444444444      223333444444444444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.30  E-value=8e-12  Score=109.36  Aligned_cols=118  Identities=29%  Similarity=0.368  Sum_probs=84.3

Q ss_pred             CCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------cceEE
Q 047314           50 ECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------LLKHV  119 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------~L~~L  119 (173)
                      .+++|++|++++|.++ ..|..++++++|+.|++++|.+. .+|..++.+++|++|++++|.+. .+|       +|+.|
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            4556666666666665 56667777777888888777765 66777777778888888777543 233       67788


Q ss_pred             EeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314          120 CFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++++|.+.+ .+|.. +.+++|++|++      +..|..++++++|+.|+++++..
T Consensus       218 ~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        218 YLGYNNLSG-EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             ECcCCccCC-cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            888887775 66766 77788888877      45677778888888888877653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.26  E-value=2.7e-13  Score=94.53  Aligned_cols=121  Identities=18%  Similarity=0.219  Sum_probs=104.1

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCC-------CCCCcceE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLV-------DPIPLLKH  118 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~-------~~lp~L~~  118 (173)
                      +.+-.+.+++.|.++.|.++.+|+.+..+.+|+.|++++|+++++|.+++.+++|+.|+++-|.+       +.+|.|+.
T Consensus        27 ~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            44667788899999999999999999999999999999999999999999999999999998854       44558999


Q ss_pred             EEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          119 VCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      |++.+|.+....+|.. -.+..|+-|.+     .-+|..++++++||.|.+++.
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn  160 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN  160 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence            9999999987677765 55666666666     567999999999999988764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.18  E-value=4.3e-12  Score=102.61  Aligned_cols=122  Identities=19%  Similarity=0.142  Sum_probs=96.0

Q ss_pred             ccccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      ..|..|.+++.|++..|+++.+.+ ++.+++.|+.|+++.|.|. ..++++..+++|..|++++|.+.+++        .
T Consensus       263 G~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~  342 (873)
T KOG4194|consen  263 GAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQ  342 (873)
T ss_pred             cceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHH
Confidence            688999999999999999995544 5789999999999999999 44788999999999999999999988        6


Q ss_pred             ceEEEeeceeccccCCCCC--CCccccceeec---------cccccccCCCCCcCEEEEeceeee
Q 047314          116 LKHVCFNEFREMVVNPPVE--ASLPNLQKLIG---------TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l---------~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      |+.|+++.|++.  .+...  ..+++|+.|++         +.-...+..++.|++|++.+...+
T Consensus       343 Le~LnLs~Nsi~--~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  343 LEELNLSHNSID--HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK  405 (873)
T ss_pred             hhhhcccccchH--HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee
Confidence            778888888777  66554  67777777777         122223566777777776665443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=1.9e-11  Score=86.52  Aligned_cols=121  Identities=26%  Similarity=0.346  Sum_probs=37.6

Q ss_pred             cCCCcccEEEecCcccccchhhhC-CCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC--------CcceEE
Q 047314           49 KECRLLQVLDLEGVYMALLDSSVG-NLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI--------PLLKHV  119 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~-~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l--------p~L~~L  119 (173)
                      .+..+++.|++.+|.|+.+ +.++ .+.+|+.|++++|.++.++ .+..++.|++|++++|.+..+        |+|+.|
T Consensus        16 ~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL   93 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred             ccccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence            3444567777777777644 2344 4566777777777777664 466677777777777765544        267777


Q ss_pred             EeeceeccccCCCCC-CCccccceeec---------cccccccCCCCCcCEEEEeceeeecc
Q 047314          120 CFNEFREMVVNPPVE-ASLPNLQKLIG---------TEMVCSSGRFSHLQFLKLSNIRVEER  171 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l---------~~~~~~l~~l~~L~~L~l~~~~~~~~  171 (173)
                      ++++|.+..+.-... ..+++|+.|++         .-....+..+|+|+.||-..+...++
T Consensus        94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~~ER  155 (175)
T PF14580_consen   94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTEEER  155 (175)
T ss_dssp             E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS-B-
T ss_pred             ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccHHHh
Confidence            777777762222223 66777777777         11122356677777777666555443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.06  E-value=1.4e-11  Score=100.71  Aligned_cols=120  Identities=26%  Similarity=0.309  Sum_probs=76.5

Q ss_pred             CCcccEEEecCcccccchhhh-CCCCCCcEEeccCCcccccCccccCCCCccEEEecCCC-----CCCCC---cceEEEe
Q 047314           51 CRLLQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTL-----VDPIP---LLKHVCF  121 (173)
Q Consensus        51 l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~-----~~~lp---~L~~L~l  121 (173)
                      .+++-+|++++|+|..+|.++ -+++-|-+|+++.|++..+|+.+..+..|++|.+++|.     ++.+|   +|+.|.+
T Consensus       125 AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm  204 (1255)
T KOG0444|consen  125 AKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM  204 (1255)
T ss_pred             hcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence            334444555555555555543 24555555555555555666666666666666666662     34455   6666777


Q ss_pred             eceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceeeec
Q 047314          122 NEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVEE  170 (173)
Q Consensus       122 ~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~~  170 (173)
                      +++.-+...+|.. ..+.+|..+|+     ..+|..+..+++|+.|++++....+
T Consensus       205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             ccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee
Confidence            7666555567777 77788888887     4567778899999999998876543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.99  E-value=1.5e-11  Score=100.50  Aligned_cols=122  Identities=23%  Similarity=0.242  Sum_probs=71.0

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH  118 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~  118 (173)
                      +.+..+.+|+.++++.|+++.+|..+.++.+|+.|++++|.++++.-..+...+|++|+++.|++..+|       .|+.
T Consensus       216 tsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~k  295 (1255)
T KOG0444|consen  216 TSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTK  295 (1255)
T ss_pred             CchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHH
Confidence            445555566666666666666666666666666666666666655555555556666666666665555       4555


Q ss_pred             EEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314          119 VCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                      |++.+|.+.=+-+|.+ |.+.+|+.++.     .-+|..+..|..|++|.+++.+
T Consensus       296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr  350 (1255)
T KOG0444|consen  296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR  350 (1255)
T ss_pred             HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc
Confidence            5566655543345555 66655555554     3345556666666666555443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.94  E-value=4e-10  Score=91.48  Aligned_cols=122  Identities=26%  Similarity=0.260  Sum_probs=82.7

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      ..|.++++|+.+++.+|.++.+|.......++..|++..|.|..+ ...+..++.|+.+|++.|.+..+|        ++
T Consensus        96 ~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni  175 (873)
T KOG4194|consen   96 EFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNI  175 (873)
T ss_pred             HHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCc
Confidence            456777788888888887777777666666677777777777744 456677777788888887666655        67


Q ss_pred             eEEEeeceeccccCCCCC--CCccccceeec-----ccccc-ccCCCCCcCEEEEeceeee
Q 047314          117 KHVCFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~~~  169 (173)
                      ++|++++|+++  ++-..  ..+.+|-.|.+     ..+|. .++++++|+.|++...+..
T Consensus       176 ~~L~La~N~It--~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir  234 (873)
T KOG4194|consen  176 KKLNLASNRIT--TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR  234 (873)
T ss_pred             eEEeecccccc--ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence            77888877777  55433  55566666666     33443 3666777777776655443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.93  E-value=1.1e-10  Score=90.99  Aligned_cols=108  Identities=25%  Similarity=0.335  Sum_probs=82.5

Q ss_pred             EEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeeceecccc
Q 047314           57 LDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNEFREMVV  129 (173)
Q Consensus        57 L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~n~~~~~  129 (173)
                      +.++.|.+..+|..++.+++|..|++++|.+..+|..++.+..|+.++++.|+++.+|       .++.+-.+.|.+.  
T Consensus       417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~--  494 (565)
T KOG0472|consen  417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIG--  494 (565)
T ss_pred             HHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccccc--
Confidence            4455555555566677778888888888888888888888888888888888888777       4455555567777  


Q ss_pred             CCCC-C-CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          130 NPPV-E-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       130 ~lp~-~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      .++. . .+|.+|..||+     ..+|..++++.+|++|++++.
T Consensus       495 ~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  495 SVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             ccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCC
Confidence            5554 4 88889999988     678999999999999998874

>PLN03210 Resistant to P

Probab=98.90  E-value=4.8e-09  Score=93.59  Aligned_cols=116  Identities=25%  Similarity=0.282  Sum_probs=98.6

Q ss_pred             CCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCc-ccccCccccCCCCccEEEecCC-CCCCCC----cceEEEeec
Q 047314           51 CRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTW-LKKLPSSMGNLFNLQSLDLSST-LVDPIP----LLKHVCFNE  123 (173)
Q Consensus        51 l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~-~~~~p~~l~~l~~L~~L~l~~~-~~~~lp----~L~~L~l~~  123 (173)
                      .++|+.|++++|... .+|.+++++++|+.|++++|. +..+|..+ .+++|+.|++++| .+..+|    +|+.|++++
T Consensus       777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCC
Confidence            467889999998644 899999999999999998864 66888766 7899999999998 466665    899999999


Q ss_pred             eeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEeceeee
Q 047314          124 FREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       124 n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      |.+.  .+|.. +.+++|+.|++      ..+|..+..+++|+.+++++|...
T Consensus       856 n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L  906 (1153)
T PLN03210        856 TGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL  906 (1153)
T ss_pred             CCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence            9998  88988 99999999988      467777889999999999988643

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.89  E-value=1.5e-09  Score=76.83  Aligned_cols=96  Identities=26%  Similarity=0.307  Sum_probs=49.3

Q ss_pred             ccc-CCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccc-cCCCCccEEEecCCCCCCCC---------c
Q 047314           47 LAK-ECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLVDPIP---------L  115 (173)
Q Consensus        47 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l-~~l~~L~~L~l~~~~~~~lp---------~  115 (173)
                      .++ .+.+|+.|++++|.++.+. .+..++.|+.|++++|.++.++..+ ..+++|+.|.+++|.+..+.         +
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~  114 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK  114 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred             chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence            344 5789999999999999764 5788999999999999999887666 46899999999999775543         8


Q ss_pred             ceEEEeeceeccccCCCC----C-CCccccceeec
Q 047314          116 LKHVCFNEFREMVVNPPV----E-ASLPNLQKLIG  145 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~----~-~~l~~L~~L~l  145 (173)
                      |+.|++.+|++.  ..+.    . ..+|+|+.||.
T Consensus       115 L~~L~L~~NPv~--~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen  115 LRVLSLEGNPVC--EKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TT-GGG--GSTTHHHHHHHH-TT-SEETT
T ss_pred             cceeeccCCccc--chhhHHHHHHHHcChhheeCC
Confidence            999999999998  4443    1 67899999997

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.83  E-value=2e-11  Score=94.98  Aligned_cols=120  Identities=28%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+.++..+++.+|.++++|+..-+|+.|+.++.-.|-++.+|+.++.+.+|..|++..|.+..+|      .|..+
T Consensus       154 ~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~El  233 (565)
T KOG0472|consen  154 EDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKEL  233 (565)
T ss_pred             hHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHH
Confidence            556677777788888888887777766688888888877878888888888888888888888887777      67778


Q ss_pred             EeeceeccccCCCCC--CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314          120 CFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                      +++.|.+.  -+|..  ..++++-.||+     .++|.++.-+.+|.+||+++..
T Consensus       234 h~g~N~i~--~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~  286 (565)
T KOG0472|consen  234 HVGENQIE--MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND  286 (565)
T ss_pred             HhcccHHH--hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc
Confidence            88888777  67766  57777777777     6677777777777777777654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.82  E-value=8.9e-09  Score=60.35  Aligned_cols=59  Identities=36%  Similarity=0.450  Sum_probs=51.8

Q ss_pred             CcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCC
Q 047314           52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLV  110 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~  110 (173)
                      ++|++|++++|.++.+|+ .+..+++|+++++++|.+..++ ..+..+++|+.|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            578999999999997775 5788999999999999999775 5789999999999999864

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.76  E-value=7.6e-10  Score=93.56  Aligned_cols=100  Identities=26%  Similarity=0.233  Sum_probs=81.0

Q ss_pred             ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKH  118 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~  118 (173)
                      |.+-++++|++|++++|.+..+|.+ +.++..|+.|++++|.++.+|..+..+..|++|..-+|.+..+|      .|+.
T Consensus       377 p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~~~l~qL~~  456 (1081)
T KOG0618|consen  377 PVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPELAQLPQLKV  456 (1081)
T ss_pred             hhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhhhhcCcceE
Confidence            7888888999999999988877776 56788888899999988888888888888888888888777777      7888


Q ss_pred             EEeeceeccccCCCCCCCccccceeec
Q 047314          119 VCFNEFREMVVNPPVEASLPNLQKLIG  145 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~~~l~~L~~L~l  145 (173)
                      ++++.|.+....+|..-.+++|++||+
T Consensus       457 lDlS~N~L~~~~l~~~~p~p~LkyLdl  483 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPSPNLKYLDL  483 (1081)
T ss_pred             EecccchhhhhhhhhhCCCcccceeec
Confidence            899988888544444433388888888

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.71  E-value=2.5e-09  Score=90.47  Aligned_cols=69  Identities=22%  Similarity=0.290  Sum_probs=58.1

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp  114 (173)
                      .+++.+.+|+.+....|.++.+|..+..+++|+.+....|.++.+|+...++.+|++|++..|.+..+|
T Consensus       258 ~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp  326 (1081)
T KOG0618|consen  258 EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLP  326 (1081)
T ss_pred             HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccc
Confidence            677788888888888888888888888888888888888888888888888888999998888887776

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.68  E-value=1.5e-09  Score=87.80  Aligned_cols=116  Identities=28%  Similarity=0.343  Sum_probs=82.1

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH  118 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~  118 (173)
                      ..++.+..|++++++.|+++.+|..++.++ |+.+.+++|+++.+|..++....|..++.+.|.+..+|       +|+.
T Consensus       115 ~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~  193 (722)
T KOG0532|consen  115 EAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRD  193 (722)
T ss_pred             hhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHH
Confidence            567778888888888888888888887774 78888888888888888887778888888888777776       5555


Q ss_pred             EEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEec
Q 047314          119 VCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~  165 (173)
                      +.+..|.+.  .+|.. ..++ |..||+     ..+|..+.+++.|+.|-+.+
T Consensus       194 l~vrRn~l~--~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~Len  243 (722)
T KOG0532|consen  194 LNVRRNHLE--DLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLEN  243 (722)
T ss_pred             HHHhhhhhh--hCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeecc
Confidence            666666665  55655 5443 445555     44566666666666665554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.59  E-value=7.8e-08  Score=82.06  Aligned_cols=38  Identities=11%  Similarity=0.216  Sum_probs=18.8

Q ss_pred             cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCc
Q 047314           53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPS   92 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~   92 (173)
                      +|+.|++++|.++.+|..+.  .+|+.|++++|.+..+|.
T Consensus       221 nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~  258 (754)
T PRK15370        221 NIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPE  258 (754)
T ss_pred             CCCEEECCCCccccCChhhh--ccccEEECcCCccCcCCh
Confidence            56666666666655554432  234444444444444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.58  E-value=3.8e-08  Score=85.18  Aligned_cols=124  Identities=33%  Similarity=0.450  Sum_probs=90.5

Q ss_pred             ccccCCCcccEEEecCcc-cccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCC-CCCCC-------cc
Q 047314           46 FLAKECRLLQVLDLEGVY-MALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTL-VDPIP-------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~-l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~lp-------~L  116 (173)
                      +.|..++.|++||+++|. +.++|.+++.+.+|++|+++.+.+..+|.+++.+..|.+|++..+. ...+|       +|
T Consensus       565 ~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             HHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccc
Confidence            458889999999999875 5699999999999999999999999999999999999999998873 23333       78


Q ss_pred             eEEEeeceeccccCC-CCC-CCccccceeec-------------------------------cccccccCCCCCcCEEEE
Q 047314          117 KHVCFNEFREMVVNP-PVE-ASLPNLQKLIG-------------------------------TEMVCSSGRFSHLQFLKL  163 (173)
Q Consensus       117 ~~L~l~~n~~~~~~l-p~~-~~l~~L~~L~l-------------------------------~~~~~~l~~l~~L~~L~l  163 (173)
                      ++|.+.......+.. ... .++..|+.+..                               ...+..++.+.+|+.|.+
T Consensus       645 r~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i  724 (889)
T KOG4658|consen  645 RVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSI  724 (889)
T ss_pred             cEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEE
Confidence            888887654221011 111 23333333322                               223445778888999999


Q ss_pred             eceeee
Q 047314          164 SNIRVE  169 (173)
Q Consensus       164 ~~~~~~  169 (173)
                      .+|...
T Consensus       725 ~~~~~~  730 (889)
T KOG4658|consen  725 LDCGIS  730 (889)
T ss_pred             EcCCCc
Confidence            888764

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.57  E-value=1.3e-09  Score=88.11  Aligned_cols=119  Identities=23%  Similarity=0.239  Sum_probs=102.2

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH  118 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~  118 (173)
                      ..++.+..|..+.+..|.+..+|..++++..|.+++++.|+++.+|..+..|+ |+.+.+++|+++.+|       .|.+
T Consensus        92 ~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~  170 (722)
T KOG0532|consen   92 EEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAH  170 (722)
T ss_pred             hHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHH
Confidence            34455667888888888888889999999999999999999999999888776 888999999888777       8899


Q ss_pred             EEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          119 VCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++.+.|.+.  .+|.. +++.+|+.|.+     ..+|.++..|+ |.+||+++...
T Consensus       171 ld~s~nei~--slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNki  223 (722)
T KOG0532|consen  171 LDVSKNEIQ--SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKI  223 (722)
T ss_pred             hhhhhhhhh--hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCce
Confidence            999999998  89988 99999998887     67899988777 88999998654

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=1.7e-07  Score=78.81  Aligned_cols=92  Identities=22%  Similarity=0.349  Sum_probs=74.7

Q ss_pred             cccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------cceEEEee
Q 047314           53 LLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------LLKHVCFN  122 (173)
Q Consensus        53 ~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------~L~~L~l~  122 (173)
                      .++.|++.+|.++ .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|       +|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            3778899999988 78888999999999999999887 78888999999999999999764 444       78999999


Q ss_pred             ceeccccCCCCC-CC-ccccceeec
Q 047314          123 EFREMVVNPPVE-AS-LPNLQKLIG  145 (173)
Q Consensus       123 ~n~~~~~~lp~~-~~-l~~L~~L~l  145 (173)
                      +|.+.+ .+|.. +. ..++..+++
T Consensus       499 ~N~l~g-~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        499 GNSLSG-RVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCcccc-cCChHHhhccccCceEEe
Confidence            999887 77876 43 345555555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.54  E-value=1.5e-07  Score=80.42  Aligned_cols=89  Identities=21%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             CCcEEeccCCcccccCccccC-----------------CCCccEEEecCCCCCCCC----cceEEEeeceeccccCCCCC
Q 047314           76 HLRYLDLRKTWLKKLPSSMGN-----------------LFNLQSLDLSSTLVDPIP----LLKHVCFNEFREMVVNPPVE  134 (173)
Q Consensus        76 ~L~~l~l~~~~~~~~p~~l~~-----------------l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~~~~lp~~  134 (173)
                      +|+.|++++|+++.+|.....                 ..+|+.|++++|.+..+|    +|+.|++++|.+.  .+|..
T Consensus       343 ~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~Ls--sIP~l  420 (788)
T PRK15387        343 GLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT--SLPML  420 (788)
T ss_pred             ccceEecCCCccCCCCCCCcccceehhhccccccCcccccccceEEecCCcccCCCCcccCCCEEEccCCcCC--CCCcc
Confidence            466777777766655532111                 124666777777666665    6777777777776  56643


Q ss_pred             CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          135 ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       135 ~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                        ..+|+.|++     ..+|..+.++++|+.|+++++.-
T Consensus       421 --~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        421 --PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             --hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence              234556666     66788888899999999887643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.51  E-value=5.3e-08  Score=77.46  Aligned_cols=120  Identities=32%  Similarity=0.352  Sum_probs=69.4

Q ss_pred             ccccCCC-cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cce
Q 047314           46 FLAKECR-LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLK  117 (173)
Q Consensus        46 ~~~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~  117 (173)
                      +....+. +|+.|++++|.+..+|..+..+++|+.|+++.|.+..+|...+..+.|+.+++++|.+..+|       .|+
T Consensus       133 ~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~  212 (394)
T COG4886         133 PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALE  212 (394)
T ss_pred             cccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhh
Confidence            4444443 67777777777776666666777777777777777777666556667777777777666666       356


Q ss_pred             EEEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314          118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                      .+.+++|...  ..+.. +.++++..+.+     ...+..++.++.++.|++++..
T Consensus       213 ~l~~~~N~~~--~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         213 ELDLSNNSII--ELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             hhhhcCCcce--ecchhhhhcccccccccCCceeeeccchhccccccceecccccc
Confidence            6666666433  23333 44444444433     1123444555555555555443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.48  E-value=1.4e-08  Score=76.87  Aligned_cols=97  Identities=26%  Similarity=0.226  Sum_probs=62.1

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH  118 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~  118 (173)
                      ..+..+..|+.+++++|.|+.+-+++.-++.++.|+++.|++..+-. +..+++|+.||+++|.+..+.       +++.
T Consensus       278 ~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  278 VSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT  356 (490)
T ss_pred             EecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence            34455566777888888777766776667777888887777765533 667777788888877554433       5566


Q ss_pred             EEeeceeccccCCCCCCCccccceeec
Q 047314          119 VCFNEFREMVVNPPVEASLPNLQKLIG  145 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~~~l~~L~~L~l  145 (173)
                      |.++.|.+.  ++...+.+-+|..||+
T Consensus       357 L~La~N~iE--~LSGL~KLYSLvnLDl  381 (490)
T KOG1259|consen  357 LKLAQNKIE--TLSGLRKLYSLVNLDL  381 (490)
T ss_pred             eehhhhhHh--hhhhhHhhhhheeccc
Confidence            666665554  3322245555555555

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.46  E-value=6.8e-07  Score=76.42  Aligned_cols=106  Identities=15%  Similarity=0.170  Sum_probs=68.0

Q ss_pred             CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEEeeceec
Q 047314           52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEFRE  126 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n~~  126 (173)
                      ++++.|++++|.++.+|..+.  .+|+.|++++|.++.+|..+.  .+|+.|++++|.+..+|     +|+.|++++|.+
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L  274 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLPSALQSLDLFHNKI  274 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHhCCCCEEECcCCcc
Confidence            357777777777777776554  467777777777777776543  35777778877777776     677788877777


Q ss_pred             cccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          127 MVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       127 ~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      .  .+|.. -.++|+.|++     ..+|..+.  ++|+.|+++++
T Consensus       275 ~--~LP~~-l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N  314 (754)
T PRK15370        275 S--CLPEN-LPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN  314 (754)
T ss_pred             C--ccccc-cCCCCcEEECCCCccccCcccch--hhHHHHHhcCC
Confidence            7  56653 1246777776     33333222  24555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.45  E-value=3.2e-08  Score=76.12  Aligned_cols=121  Identities=19%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             cccCCCcccEEEecCcccc-cchhhhCCCCC---CcEEeccCCccc-----ccCccccCC-CCccEEEecCCCCCC----
Q 047314           47 LAKECRLLQVLDLEGVYMA-LLDSSVGNLIH---LRYLDLRKTWLK-----KLPSSMGNL-FNLQSLDLSSTLVDP----  112 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~---L~~l~l~~~~~~-----~~p~~l~~l-~~L~~L~l~~~~~~~----  112 (173)
                      .+..+++|+.|++++|.+. ..+..+..+..   |+.|++++|.+.     .+...+..+ ++|+.+++++|.+..    
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~  155 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE  155 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence            3455666667777666665 34444433333   666666666554     112233444 566666666665441    


Q ss_pred             -C-------CcceEEEeeceeccccCC---CCC-CCccccceeec----------cccccccCCCCCcCEEEEecee
Q 047314          113 -I-------PLLKHVCFNEFREMVVNP---PVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       113 -l-------p~L~~L~l~~n~~~~~~l---p~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                       +       ++|+.|++++|.+.+..+   +.. ..+++|++|++          ..++..+..+++|+.|+++++.
T Consensus       156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence             0       146666666665553111   111 22345666655          1122334455566666666543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.44  E-value=3.5e-07  Score=49.86  Aligned_cols=40  Identities=25%  Similarity=0.334  Sum_probs=28.5

Q ss_pred             CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC
Q 047314           52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP   91 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p   91 (173)
                      ++|++|++++|+|+.+|+.+.++++|+.|++++|.++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4677888888888877777778888888888877776553

...

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.41  E-value=5.6e-08  Score=74.81  Aligned_cols=14  Identities=29%  Similarity=0.235  Sum_probs=6.6

Q ss_pred             CCCcEEeccCCccc
Q 047314           75 IHLRYLDLRKTWLK   88 (173)
Q Consensus        75 ~~L~~l~l~~~~~~   88 (173)
                      ++|+.+++++|.++
T Consensus       137 ~~L~~L~L~~n~l~  150 (319)
T cd00116         137 PALEKLVLGRNRLE  150 (319)
T ss_pred             CCceEEEcCCCcCC
Confidence            44455555444433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.37  E-value=7.4e-08  Score=73.07  Aligned_cols=99  Identities=19%  Similarity=0.170  Sum_probs=83.0

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      ..+.-++.++.|++++|.+..+.. +..+.+|+.|++++|.+..+-.+-.++.+..+|.+++|.+..+.      +|..|
T Consensus       301 ESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnL  379 (490)
T KOG1259|consen  301 ESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNL  379 (490)
T ss_pred             hhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheec
Confidence            456668899999999999986544 78899999999999999887766678899999999999777665      89999


Q ss_pred             EeeceeccccCCCCC-CCccccceeec
Q 047314          120 CFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      ++.+|++...+-.+. |++|.|+++.+
T Consensus       380 Dl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  380 DLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             cccccchhhHHHhcccccccHHHHHhh
Confidence            999999983333455 99999999887

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.35  E-value=1.9e-07  Score=74.33  Aligned_cols=121  Identities=30%  Similarity=0.344  Sum_probs=99.2

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCC-CCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cce
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLI-HLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLK  117 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~-~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~  117 (173)
                      .....++.++.+++.+|.++.+++....+. +|+.++++.|.+..+|..+..++.|+.|++++|.+..+|       .|+
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~  189 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLN  189 (394)
T ss_pred             hhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhh
Confidence            344555779999999999999999888885 999999999999999888899999999999999887776       788


Q ss_pred             EEEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      .+++++|.+.  ++|.. +....|+.+.+     ...+..+..++++..+.+.+...
T Consensus       190 ~L~ls~N~i~--~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         190 NLDLSGNKIS--DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             heeccCCccc--cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee
Confidence            9999999999  88876 56666888887     24566677788777777665543

>PLN03150 hypothetical protein; Provisional

Probab=98.34  E-value=9.3e-07  Score=74.48  Aligned_cols=81  Identities=25%  Similarity=0.377  Sum_probs=69.9

Q ss_pred             ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC--------
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP--------  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp--------  114 (173)
                      +.++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|        
T Consensus       436 ~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~  515 (623)
T PLN03150        436 NDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLL  515 (623)
T ss_pred             HHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccc
Confidence            56788999999999999998 89999999999999999999998 88999999999999999999764 566        


Q ss_pred             cceEEEeeceec
Q 047314          115 LLKHVCFNEFRE  126 (173)
Q Consensus       115 ~L~~L~l~~n~~  126 (173)
                      ++..+++.+|..
T Consensus       516 ~~~~l~~~~N~~  527 (623)
T PLN03150        516 HRASFNFTDNAG  527 (623)
T ss_pred             cCceEEecCCcc
Confidence            344667776643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.30  E-value=2.1e-06  Score=73.52  Aligned_cols=83  Identities=23%  Similarity=0.193  Sum_probs=50.1

Q ss_pred             cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceeccc
Q 047314           53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREMV  128 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~~  128 (173)
                      +++.|++.+|+++.+|..   +++|+.|++++|.++.+|..   .++|+.|++++|.+..+|    .|+.|++++|.+. 
T Consensus       223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-  295 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-  295 (788)
T ss_pred             CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCccc-
Confidence            566666666666655542   35667777777766666542   245666666666555544    5666677776666 


Q ss_pred             cCCCCCCCccccceeec
Q 047314          129 VNPPVEASLPNLQKLIG  145 (173)
Q Consensus       129 ~~lp~~~~l~~L~~L~l  145 (173)
                       .+|.  ..++|+.|++
T Consensus       296 -~LP~--~p~~L~~LdL  309 (788)
T PRK15387        296 -SLPV--LPPGLQELSV  309 (788)
T ss_pred             -cccc--cccccceeEC
Confidence             4554  2356777776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.29  E-value=5.7e-07  Score=52.56  Aligned_cols=52  Identities=35%  Similarity=0.463  Sum_probs=41.7

Q ss_pred             CCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEEeeceec
Q 047314           75 IHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFRE  126 (173)
Q Consensus        75 ~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~  126 (173)
                      ++|+.+++++|.+..+|. .+..+++|++|++++|.+..++        +|+++++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            468999999999998874 6788999999999998665443        778888777753

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=7.1e-07  Score=48.65  Aligned_cols=40  Identities=35%  Similarity=0.538  Sum_probs=34.5

Q ss_pred             CCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC
Q 047314           75 IHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP  114 (173)
Q Consensus        75 ~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp  114 (173)
                      ++|++|++++|+++.+|+.++.|++|+.|++++|.+.+++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4789999999999999988999999999999999888764

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.17  E-value=8.8e-08  Score=74.75  Aligned_cols=98  Identities=21%  Similarity=0.222  Sum_probs=64.8

Q ss_pred             ccccCCCc-ccEEEecCcccccchhh-hCCCCCCcEEeccCCccccc-CccccCCCCccEEEecC-CCCCCCC-------
Q 047314           46 FLAKECRL-LQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSS-TLVDPIP-------  114 (173)
Q Consensus        46 ~~~~~l~~-L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~-~~~~~lp-------  114 (173)
                      .+-.+++. ...+++..|+|+.+|+. |..+++|+.++++.|.|+.+ |+.|..+.++..|-+.+ |+|+++|       
T Consensus        60 eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL  139 (498)
T KOG4237|consen   60 EVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGL  139 (498)
T ss_pred             cCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhH
Confidence            34444443 44578888888876665 77888899999998888855 77888888876666655 7888887       


Q ss_pred             -cceEEEeeceeccccCCCCC--CCccccceeec
Q 047314          115 -LLKHVCFNEFREMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       115 -~L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                       +++.|.+.-|.+.  .+++.  ..+++|..|.+
T Consensus       140 ~slqrLllNan~i~--Cir~~al~dL~~l~lLsl  171 (498)
T KOG4237|consen  140 SSLQRLLLNANHIN--CIRQDALRDLPSLSLLSL  171 (498)
T ss_pred             HHHHHHhcChhhhc--chhHHHHHHhhhcchhcc
Confidence             4444545544444  44433  45555555544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.16  E-value=1e-07  Score=74.43  Aligned_cols=98  Identities=21%  Similarity=0.185  Sum_probs=74.5

Q ss_pred             ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccC-CcccccCc-cccCCCCccEEEecCCCCCCCC--------
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRK-TWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~-~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------  114 (173)
                      .+|+.+++|+.|+++.|+|+ .-|..|..++.+..|-+.+ |+|+.+|. .|+.+.+++.|.+.-|.+.-++        
T Consensus        85 ~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~  164 (498)
T KOG4237|consen   85 GAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLP  164 (498)
T ss_pred             hhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhh
Confidence            68999999999999999999 5677799999977766654 99999985 5789999999988887655443        


Q ss_pred             cceEEEeeceeccccCCCCC--CCccccceeec
Q 047314          115 LLKHVCFNEFREMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       115 ~L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      ++..|.+..|.+.  .++..  ..+.+++.+++
T Consensus       165 ~l~lLslyDn~~q--~i~~~tf~~l~~i~tlhl  195 (498)
T KOG4237|consen  165 SLSLLSLYDNKIQ--SICKGTFQGLAAIKTLHL  195 (498)
T ss_pred             hcchhcccchhhh--hhccccccchhccchHhh
Confidence            6667777777666  55542  55555555554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.97  E-value=7.4e-06  Score=58.84  Aligned_cols=57  Identities=21%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccC-CCCccEEEecCCCC
Q 047314           53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGN-LFNLQSLDLSSTLV  110 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~-l~~L~~L~l~~~~~  110 (173)
                      +...+++.+|.+-.+ ..+..+..|.+|.+.+|.|+.+.+.+.. +++|..|.+.+|.+
T Consensus        43 ~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi  100 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI  100 (233)
T ss_pred             ccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence            444566666665533 2345556666666666666655444432 34566666666544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.95  E-value=9.2e-08  Score=79.79  Aligned_cols=92  Identities=22%  Similarity=0.182  Sum_probs=60.3

Q ss_pred             CCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeec
Q 047314           51 CRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNE  123 (173)
Q Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~  123 (173)
                      ...|.+.+.++|.+..+-.++.-++.++.|+++.|++..+- .+..|++|.+||+++|.++.+|       .|..|.+.+
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence            34566667777777666666666677777777777766543 5566677777777777666666       566677777


Q ss_pred             eeccccCCCCCCCccccceeec
Q 047314          124 FREMVVNPPVEASLPNLQKLIG  145 (173)
Q Consensus       124 n~~~~~~lp~~~~l~~L~~L~l  145 (173)
                      |-++  ++....++++|+.||+
T Consensus       242 N~l~--tL~gie~LksL~~LDl  261 (1096)
T KOG1859|consen  242 NALT--TLRGIENLKSLYGLDL  261 (1096)
T ss_pred             cHHH--hhhhHHhhhhhhccch
Confidence            7665  4433356666666666

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.84  E-value=3.1e-06  Score=67.98  Aligned_cols=79  Identities=27%  Similarity=0.351  Sum_probs=40.2

Q ss_pred             ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEe
Q 047314           48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCF  121 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l  121 (173)
                      +..+++++.+++.+|.|..+...+..+++|+++++++|.|+.+. .+..++.|+.|++.+|.+..++      .|+.+++
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDL  169 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccC
Confidence            44555555555555555544333445555555555555555442 2334444555555555444333      4455555


Q ss_pred             eceecc
Q 047314          122 NEFREM  127 (173)
Q Consensus       122 ~~n~~~  127 (173)
                      ++|.+.
T Consensus       170 ~~n~i~  175 (414)
T KOG0531|consen  170 SYNRIV  175 (414)
T ss_pred             Ccchhh
Confidence            555554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.78  E-value=9.9e-06  Score=62.44  Aligned_cols=125  Identities=17%  Similarity=0.092  Sum_probs=94.3

Q ss_pred             ccccCCCcccEEEecCcccc-cchhh----hCCCCCCcEEeccCCcccc--------------cCccccCCCCccEEEec
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSS----VGNLIHLRYLDLRKTWLKK--------------LPSSMGNLFNLQSLDLS  106 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~----~~~l~~L~~l~l~~~~~~~--------------~p~~l~~l~~L~~L~l~  106 (173)
                      +++..+++|++++|+.|.+. ..++.    +.++..|+.|.+.+|++..              .....+.-+.|+++...
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            77788889999999999987 55444    3467889999999987662              12234556789999999


Q ss_pred             CCCCCCCC------------cceEEEeeceeccccCC---CCC-CCccccceeec----------cccccccCCCCCcCE
Q 047314          107 STLVDPIP------------LLKHVCFNEFREMVVNP---PVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQF  160 (173)
Q Consensus       107 ~~~~~~lp------------~L~~L~l~~n~~~~~~l---p~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~  160 (173)
                      .|++..-+            .|+.+.+..|.+....+   ... ..+++|+.|++          ..+...++.+++|+.
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            99877655            78889999988874222   123 67899999999          335556888999999


Q ss_pred             EEEeceeeec
Q 047314          161 LKLSNIRVEE  170 (173)
Q Consensus       161 L~l~~~~~~~  170 (173)
                      +++.+|-..+
T Consensus       246 l~l~dcll~~  255 (382)
T KOG1909|consen  246 LNLGDCLLEN  255 (382)
T ss_pred             eccccccccc
Confidence            9999885543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=5.4e-06  Score=65.66  Aligned_cols=35  Identities=17%  Similarity=0.063  Sum_probs=15.4

Q ss_pred             CCcccEEEecCcccc--cchhhhCCCCCCcEEeccCC
Q 047314           51 CRLLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKT   85 (173)
Q Consensus        51 l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~   85 (173)
                      +++++.|.+++|.++  ++..-....+++..|++..|
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N  232 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN  232 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence            445555555555554  22222223444444444444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=9.3e-06  Score=64.35  Aligned_cols=120  Identities=21%  Similarity=0.206  Sum_probs=66.6

Q ss_pred             cccCCCcccEEEecCcccc---cchhhhCCCCCCcEEeccCCccccc-Cccc-cCCCCccEEEecCCCCCC---------
Q 047314           47 LAKECRLLQVLDLEGVYMA---LLDSSVGNLIHLRYLDLRKTWLKKL-PSSM-GNLFNLQSLDLSSTLVDP---------  112 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~---~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l-~~l~~L~~L~l~~~~~~~---------  112 (173)
                      ....|++++.|+++.|-+.   .+..-...+++|+.|+++.|++... .... ..+++|+.|.++.|.+..         
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            3455777777777777655   2223344567777777776655522 1111 234555566666554321         


Q ss_pred             CC------------------------cceEEEeeceeccccCCCC--C-CCccccceeec-------cccccc-----cC
Q 047314          113 IP------------------------LLKHVCFNEFREMVVNPPV--E-ASLPNLQKLIG-------TEMVCS-----SG  153 (173)
Q Consensus       113 lp------------------------~L~~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l-------~~~~~~-----l~  153 (173)
                      +|                        .|+.|++++|.+.  +.++  . +.++.|..|.+       -..|+.     ..
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li--~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~  298 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI--DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTH  298 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc--ccccccccccccchhhhhccccCcchhcCCCccchhhhc
Confidence            22                        5677777777666  5553  2 66677776666       112222     34


Q ss_pred             CCCCcCEEEEeceee
Q 047314          154 RFSHLQFLKLSNIRV  168 (173)
Q Consensus       154 ~l~~L~~L~l~~~~~  168 (173)
                      .++.|+.|++.....
T Consensus       299 ~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  299 TFPKLEYLNISENNI  313 (505)
T ss_pred             ccccceeeecccCcc
Confidence            566777777665443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.70  E-value=0.00015  Score=57.97  Aligned_cols=73  Identities=16%  Similarity=0.207  Sum_probs=50.5

Q ss_pred             ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccC-CcccccCccccCCCCccEEEecCC-CCCCCC-cceEEEeece
Q 047314           48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRK-TWLKKLPSSMGNLFNLQSLDLSST-LVDPIP-LLKHVCFNEF  124 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~-~~~~~~p~~l~~l~~L~~L~l~~~-~~~~lp-~L~~L~l~~n  124 (173)
                      +..+.+++.|++++|.++.+|. +  ..+|+.|.+++ +.++.+|..+.  .+|+.|.+++| .+..+| +|+.|.+..+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~sLe~L~L~~n  122 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPESVRSLEIKGS  122 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccccceEEeCCC
Confidence            4456888899999988887762 1  23588888876 34556665442  46888888887 677777 7777777654


Q ss_pred             e
Q 047314          125 R  125 (173)
Q Consensus       125 ~  125 (173)
                      .
T Consensus       123 ~  123 (426)
T PRK15386        123 A  123 (426)
T ss_pred             C
Confidence            4

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.66  E-value=7.9e-06  Score=65.69  Aligned_cols=118  Identities=24%  Similarity=0.235  Sum_probs=83.2

Q ss_pred             CCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEeec
Q 047314           50 ECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCFNE  123 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l~~  123 (173)
                      .+..++.+.+..|.++..-..+..+.++..+++..|.+..+...+..+++|+++++++|.|+.+.      .|+.|++.+
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSG  149 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheecc
Confidence            45667777788887776555577888888888888888877665778888888999988777665      678888888


Q ss_pred             eeccccCCCCCCCccccceeec-----cccccc-cCCCCCcCEEEEeceeee
Q 047314          124 FREMVVNPPVEASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       124 n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~~~  169 (173)
                      |.+.  .+.....+++|+.+++     ..+... +..+.+++.+.+.+....
T Consensus       150 N~i~--~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  150 NLIS--DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             Ccch--hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            8887  5554444777777777     111111 356666666666655443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.57  E-value=5e-06  Score=56.38  Aligned_cols=63  Identities=16%  Similarity=0.168  Sum_probs=32.0

Q ss_pred             CcccEEEecCcccccchhhhCCC-CCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC
Q 047314           52 RLLQVLDLEGVYMALLDSSVGNL-IHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP  114 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~l-~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp  114 (173)
                      .+|+..++++|.+.++|+.+... +..+++++..|.+..+|..+..++.|+.|++++|.+...|
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p  116 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEP  116 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccch
Confidence            34444555555555555554432 3455555555555555555555555555555555444443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.53  E-value=1.6e-05  Score=53.98  Aligned_cols=74  Identities=18%  Similarity=0.185  Sum_probs=36.7

Q ss_pred             ccEEEecCcccc---cchhhhCCCCCCcEEeccCCcccccCccccCC-CCccEEEecCCCCCCCC-------cceEEEee
Q 047314           54 LQVLDLEGVYMA---LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNL-FNLQSLDLSSTLVDPIP-------LLKHVCFN  122 (173)
Q Consensus        54 L~~L~l~~n~l~---~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l-~~L~~L~l~~~~~~~lp-------~L~~L~l~  122 (173)
                      +..++++.|.+-   ..+..+.....|..+++++|.++..|+.+... +.++++++++|.+.++|       .|+.++++
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~  108 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR  108 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence            344455555433   22223333444555555555555555555332 34555555555555555       45555555


Q ss_pred             ceecc
Q 047314          123 EFREM  127 (173)
Q Consensus       123 ~n~~~  127 (173)
                      .|.+.
T Consensus       109 ~N~l~  113 (177)
T KOG4579|consen  109 FNPLN  113 (177)
T ss_pred             cCccc
Confidence            55555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.43  E-value=0.00028  Score=50.85  Aligned_cols=113  Identities=24%  Similarity=0.320  Sum_probs=72.5

Q ss_pred             cEEEecCcccccchhhhCC-CCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cceEEEeecee
Q 047314           55 QVLDLEGVYMALLDSSVGN-LIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFR  125 (173)
Q Consensus        55 ~~L~l~~n~l~~~~~~~~~-l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~  125 (173)
                      +.+++.+.++...-. ++- +.+.-.++++.|.+..++ .+..++.|.+|.+++|+|..+.        .|..|.+.+|+
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence            445566655532211 221 244566778777766553 4666778888888888776654        68888888888


Q ss_pred             ccccCCCC--C-CCccccceeec-------cc--cccccCCCCCcCEEEEeceeeecc
Q 047314          126 EMVVNPPV--E-ASLPNLQKLIG-------TE--MVCSSGRFSHLQFLKLSNIRVEER  171 (173)
Q Consensus       126 ~~~~~lp~--~-~~l~~L~~L~l-------~~--~~~~l~~l~~L~~L~l~~~~~~~~  171 (173)
                      +.  .+..  . ..+|.|++|.+       ..  .--.+..+|+|+.||+..++.+++
T Consensus       100 i~--~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ER  155 (233)
T KOG1644|consen  100 IQ--ELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRKER  155 (233)
T ss_pred             hh--hhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHHHH
Confidence            77  4433  3 67788888877       11  111267788888888888776654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.30  E-value=1.1e-05  Score=67.80  Aligned_cols=98  Identities=22%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC------cceE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP------LLKH  118 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp------~L~~  118 (173)
                      ..+.-++.++.|+++.|+++++. .+..+++|++||++.|.+..+|. +...+. |+.|.+.+|.++.+-      +|+.
T Consensus       181 ~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~  258 (1096)
T KOG1859|consen  181 ESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYG  258 (1096)
T ss_pred             HHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhc
Confidence            45666788899999999988765 67888999999999998888874 233444 899999998555443      8888


Q ss_pred             EEeeceeccccCCCCC-CCccccceeec
Q 047314          119 VCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      |++++|-+.+.+-... ..+..|+.|.+
T Consensus       259 LDlsyNll~~hseL~pLwsLs~L~~L~L  286 (1096)
T KOG1859|consen  259 LDLSYNLLSEHSELEPLWSLSSLIVLWL  286 (1096)
T ss_pred             cchhHhhhhcchhhhHHHHHHHHHHHhh
Confidence            9999988873111222 56667777776

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.20  E-value=0.0004  Score=52.48  Aligned_cols=124  Identities=15%  Similarity=0.067  Sum_probs=91.8

Q ss_pred             ccccCCCcccEEEecCcccc-cchhh----hCCCCCCcEEeccCCcccccC--------------ccccCCCCccEEEec
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSS----VGNLIHLRYLDLRKTWLKKLP--------------SSMGNLFNLQSLDLS  106 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~----~~~l~~L~~l~l~~~~~~~~p--------------~~l~~l~~L~~L~l~  106 (173)
                      +++.+|++|+..+++.|.+. ..|+.    +.+.+.|..|.+.+|++..+.              +....-|.|++++..
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg  165 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG  165 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence            88899999999999999987 55554    456788999999999765221              122346789999999


Q ss_pred             CCCCCCCC------------cceEEEeeceeccccCCC----CC-CCccccceeec----------cccccccCCCCCcC
Q 047314          107 STLVDPIP------------LLKHVCFNEFREMVVNPP----VE-ASLPNLQKLIG----------TEMVCSSGRFSHLQ  159 (173)
Q Consensus       107 ~~~~~~lp------------~L~~L~l~~n~~~~~~lp----~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~  159 (173)
                      .|++...|            .|+.+.+..|.++..-+.    .. ..+.+|+.||+          ..+...+..++.|+
T Consensus       166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr  245 (388)
T COG5238         166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR  245 (388)
T ss_pred             cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence            99877766            688888999988842111    12 46678999998          23455577888899


Q ss_pred             EEEEeceeee
Q 047314          160 FLKLSNIRVE  169 (173)
Q Consensus       160 ~L~l~~~~~~  169 (173)
                      .|.+.+|=..
T Consensus       246 EL~lnDClls  255 (388)
T COG5238         246 ELRLNDCLLS  255 (388)
T ss_pred             hccccchhhc
Confidence            9988887543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=8e-06  Score=62.10  Aligned_cols=63  Identities=21%  Similarity=0.251  Sum_probs=34.7

Q ss_pred             ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCC-cccccC--ccccCCCCccEEEecCC
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKT-WLKKLP--SSMGNLFNLQSLDLSST  108 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~-~~~~~p--~~l~~l~~L~~L~l~~~  108 (173)
                      ..++.+.+|+.|.+.|+.+. .+-..+..-.+|..++++.+ ++++..  --+..|..|..|++++|
T Consensus       204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc  270 (419)
T KOG2120|consen  204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWC  270 (419)
T ss_pred             HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHh
Confidence            44555666666666666655 34444555556666666653 244221  22355666666666666

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.05  E-value=0.00058  Score=58.33  Aligned_cols=76  Identities=21%  Similarity=0.232  Sum_probs=40.2

Q ss_pred             cCCCcccEEEecCcccc--cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC---------cce
Q 047314           49 KECRLLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP---------LLK  117 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp---------~L~  117 (173)
                      .-+|.|+.|.+.+-.+.  ++..-..++++|..||++++.++.+ .+++.+++|+.|.+.+-.+....         +|+
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~  223 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR  223 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence            34566666666665543  2222233556666666666665544 45556666666655544333221         556


Q ss_pred             EEEeecee
Q 047314          118 HVCFNEFR  125 (173)
Q Consensus       118 ~L~l~~n~  125 (173)
                      +|+++...
T Consensus       224 vLDIS~~~  231 (699)
T KOG3665|consen  224 VLDISRDK  231 (699)
T ss_pred             eeeccccc
Confidence            66666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.98  E-value=2.1e-05  Score=59.37  Aligned_cols=77  Identities=17%  Similarity=0.195  Sum_probs=44.1

Q ss_pred             CCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC---------CcceEEE
Q 047314           50 ECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI---------PLLKHVC  120 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l---------p~L~~L~  120 (173)
                      .+.+++.|+..|+.++++ .-...|+.|..|.++-|.|+.+. .+..|+.|+.|.+..|.|..+         |+|+.|+
T Consensus        17 dl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   17 DLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            355566677777766643 11235666777777777666552 245566666666666644433         2555666


Q ss_pred             eeceeccc
Q 047314          121 FNEFREMV  128 (173)
Q Consensus       121 l~~n~~~~  128 (173)
                      +..|...+
T Consensus        95 L~ENPCc~  102 (388)
T KOG2123|consen   95 LDENPCCG  102 (388)
T ss_pred             hccCCccc
Confidence            65554443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.00061  Score=52.11  Aligned_cols=63  Identities=25%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             ccccCCCcccEEEecCcccccchhhh-CCCCCCcEEeccCCccc--ccCccccCCCCccEEEecCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLK--KLPSSMGNLFNLQSLDLSST  108 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~-~~l~~L~~l~l~~~~~~--~~p~~l~~l~~L~~L~l~~~  108 (173)
                      .++..|+.+++|+++.|++.....+. ..+.+|+.+-+-++.+.  ..-..+..+|.++.+.++.|
T Consensus        91 ~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   91 AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            34455555666666665554222232 23445555555444333  22223344555555555554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.87  E-value=0.00079  Score=30.76  Aligned_cols=21  Identities=38%  Similarity=0.471  Sum_probs=13.6

Q ss_pred             cccEEEecCcccccchhhhCC
Q 047314           53 LLQVLDLEGVYMALLDSSVGN   73 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~   73 (173)
                      +|++|++++|.++.+|+++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            366777777777766666543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.00059  Score=50.84  Aligned_cols=79  Identities=22%  Similarity=0.231  Sum_probs=44.8

Q ss_pred             ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCC--ccc-ccCccccCCCCccEEEecCCCCCCCC---------c
Q 047314           48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKT--WLK-KLPSSMGNLFNLQSLDLSSTLVDPIP---------L  115 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~--~~~-~~p~~l~~l~~L~~L~l~~~~~~~lp---------~  115 (173)
                      ...+..+..+.+.+..++.+ ..+..|++|+.|.++.|  .+. .++.-.-.+++|+++++++|.+..+.         +
T Consensus        39 ~d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   39 TDEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             cccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            34445555566666555532 23455667777777766  444 44444445577777777777554322         4


Q ss_pred             ceEEEeeceecc
Q 047314          116 LKHVCFNEFREM  127 (173)
Q Consensus       116 L~~L~l~~n~~~  127 (173)
                      |..|.++.|...
T Consensus       118 L~~Ldl~n~~~~  129 (260)
T KOG2739|consen  118 LKSLDLFNCSVT  129 (260)
T ss_pred             hhhhhcccCCcc
Confidence            556666665554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.58  E-value=0.00049  Score=53.35  Aligned_cols=123  Identities=17%  Similarity=0.129  Sum_probs=81.9

Q ss_pred             cccCCCcccEEEecCcccc-----cchhhhCCCCCCcEEeccCCccc-----ccCccccCCCCccEEEecCCCCCC----
Q 047314           47 LAKECRLLQVLDLEGVYMA-----LLDSSVGNLIHLRYLDLRKTWLK-----KLPSSMGNLFNLQSLDLSSTLVDP----  112 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~l~l~~~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~----  112 (173)
                      -.+.-++|+++....|.+.     .+...+..++.|..+.++.|.|.     .+...+..+++|+.|++.+|.++.    
T Consensus       152 k~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~  231 (382)
T KOG1909|consen  152 KAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV  231 (382)
T ss_pred             ccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH
Confidence            3455677888888888755     23344566778888888777665     123456778888888888884432    


Q ss_pred             --------CCcceEEEeeceeccccC---CC-CC-CCccccceeec----------cccccccCCCCCcCEEEEeceeee
Q 047314          113 --------IPLLKHVCFNEFREMVVN---PP-VE-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       113 --------lp~L~~L~l~~n~~~~~~---lp-~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                              +|+|+.+++++|.+...-   +. .. ...|+|+.+.+          ..+...+...|.|.+|++.+++..
T Consensus       232 ~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  232 ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence                    336888888888776311   11 12 45678888887          223334666888899999888874

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.0012  Score=50.51  Aligned_cols=79  Identities=23%  Similarity=0.196  Sum_probs=51.4

Q ss_pred             cCCCcccEEEecCcccccchh---hhCCCCCCcEEeccCCcccccCccc-cCCCCccEEEecCCCC---------CCCCc
Q 047314           49 KECRLLQVLDLEGVYMALLDS---SVGNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLV---------DPIPL  115 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~~~~---~~~~l~~L~~l~l~~~~~~~~p~~l-~~l~~L~~L~l~~~~~---------~~lp~  115 (173)
                      ..+..++.+++.+|.|+++.+   -+.+|+.|++|+++.|++..--..+ .+..+|++|.+.+..+         ..+|.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            346678888888888874433   2457888888888888766322333 3567788888877632         23445


Q ss_pred             ceEEEeeceecc
Q 047314          116 LKHVCFNEFREM  127 (173)
Q Consensus       116 L~~L~l~~n~~~  127 (173)
                      ++.|+++.|+++
T Consensus       148 vtelHmS~N~~r  159 (418)
T KOG2982|consen  148 VTELHMSDNSLR  159 (418)
T ss_pred             hhhhhhccchhh
Confidence            666666666544

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.28  E-value=0.009  Score=47.97  Aligned_cols=58  Identities=12%  Similarity=0.168  Sum_probs=43.1

Q ss_pred             hCCCCCCcEEeccCCcccccCccccCCCCccEEEecCC-CCCCCC-----cceEEEeece-eccccCCCC
Q 047314           71 VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST-LVDPIP-----LLKHVCFNEF-REMVVNPPV  133 (173)
Q Consensus        71 ~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~-~~~~lp-----~L~~L~l~~n-~~~~~~lp~  133 (173)
                      +..+.++..|+++++.++.+|. +  ..+|+.|.+++| .+..+|     +|+.|.+++| .+.  .+|.
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~--sLP~  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEIS--GLPE  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhhhhhhheEccCccccc--cccc
Confidence            3446889999999998888882 2  246999999886 455554     8999999988 444  5554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.13  E-value=0.00018  Score=54.45  Aligned_cols=60  Identities=28%  Similarity=0.345  Sum_probs=25.2

Q ss_pred             ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC--ccccCCCCccEEEecCC
Q 047314           48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP--SSMGNLFNLQSLDLSST  108 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p--~~l~~l~~L~~L~l~~~  108 (173)
                      ..+|+.|++|.|+-|.|+.+ ..+..++.|+.|+++.|.|..+-  ..+.++++|++|.+..|
T Consensus        37 c~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   37 CEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             HHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence            34444444444444444432 22334444444444444444221  22344444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.13  E-value=0.0027  Score=28.92  Aligned_cols=21  Identities=48%  Similarity=0.738  Sum_probs=16.5

Q ss_pred             CCcEEeccCCcccccCccccC
Q 047314           76 HLRYLDLRKTWLKKLPSSMGN   96 (173)
Q Consensus        76 ~L~~l~l~~~~~~~~p~~l~~   96 (173)
                      +|++|++++|.++.+|++++.
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            478889998888888877654

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.01  E-value=0.0046  Score=46.17  Aligned_cols=69  Identities=25%  Similarity=0.223  Sum_probs=52.8

Q ss_pred             ccccCCCcccEEEecCc--ccc-cchhhhCCCCCCcEEeccCCccccc--CccccCCCCccEEEecCCCCCCCC
Q 047314           46 FLAKECRLLQVLDLEGV--YMA-LLDSSVGNLIHLRYLDLRKTWLKKL--PSSMGNLFNLQSLDLSSTLVDPIP  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n--~l~-~~~~~~~~l~~L~~l~l~~~~~~~~--p~~l~~l~~L~~L~l~~~~~~~lp  114 (173)
                      ..+..+++|+.|.++.|  .+. .++......++|+++.+++|++..+  -..+..+.+|..|++.+|....+.
T Consensus        59 ~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~  132 (260)
T KOG2739|consen   59 TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLD  132 (260)
T ss_pred             ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccc
Confidence            66788889999999999  555 5555566679999999999998842  233566778889999998655543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.00025  Score=54.15  Aligned_cols=116  Identities=22%  Similarity=0.157  Sum_probs=73.9

Q ss_pred             cccEEEecCcccc--cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCC-CCCCCC---------cceEE
Q 047314           53 LLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSST-LVDPIP---------LLKHV  119 (173)
Q Consensus        53 ~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~-~~~~lp---------~L~~L  119 (173)
                      .++.+|++...|+  .+..-+..+.+|+.+.+.++++. .+...+.+-..|+.++++.+ .+....         .|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4888999999888  44455667788999999998887 55666777788999999887 343322         34444


Q ss_pred             Eeeceecccc---------------------------C-CCCC-CCccccceeec-------cccccccCCCCCcCEEEE
Q 047314          120 CFNEFREMVV---------------------------N-PPVE-ASLPNLQKLIG-------TEMVCSSGRFSHLQFLKL  163 (173)
Q Consensus       120 ~l~~n~~~~~---------------------------~-lp~~-~~l~~L~~L~l-------~~~~~~l~~l~~L~~L~l  163 (173)
                      +++.|.....                           . +... ..+|+|.+||+       .....++..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            4443322210                           1 1112 55666666666       233445667777777777


Q ss_pred             eceee
Q 047314          164 SNIRV  168 (173)
Q Consensus       164 ~~~~~  168 (173)
                      +.|..
T Consensus       346 sRCY~  350 (419)
T KOG2120|consen  346 SRCYD  350 (419)
T ss_pred             hhhcC
Confidence            66643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.36  E-value=0.012  Score=24.96  Aligned_cols=16  Identities=31%  Similarity=0.343  Sum_probs=7.1

Q ss_pred             cccEEEecCcccccch
Q 047314           53 LLQVLDLEGVYMALLD   68 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~   68 (173)
                      +|+.|++++|.++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4566666666655443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.98  E-value=0.049  Score=25.59  Aligned_cols=19  Identities=26%  Similarity=0.265  Sum_probs=11.1

Q ss_pred             CcccEEEecCcccccchhh
Q 047314           52 RLLQVLDLEGVYMALLDSS   70 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~   70 (173)
                      ++|+.|++++|.++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666655554

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.98  E-value=0.049  Score=25.59  Aligned_cols=19  Identities=26%  Similarity=0.265  Sum_probs=11.1

Q ss_pred             CcccEEEecCcccccchhh
Q 047314           52 RLLQVLDLEGVYMALLDSS   70 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~   70 (173)
                      ++|+.|++++|.++.+|+.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4556666666666655554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.92  E-value=0.24  Score=32.56  Aligned_cols=76  Identities=14%  Similarity=0.270  Sum_probs=39.5

Q ss_pred             cccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCC--C-----CCCCcce
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTL--V-----DPIPLLK  117 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~--~-----~~lp~L~  117 (173)
                      +|.++.+|+.+.+.. .+..++.. +....+++.+.+..+ +..++ ..+..+.+++.+.+..+.  +     ...+.++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~   84 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNNLKSIGDNAFSNCTNLK   84 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETSTT-EE-TTTTTT-TTEC
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccccccccccccccccccccc
Confidence            577788888888774 45544443 566777888888765 55554 345667678888876531  1     1122666


Q ss_pred             EEEeece
Q 047314          118 HVCFNEF  124 (173)
Q Consensus       118 ~L~l~~n  124 (173)
                      .+.+..+
T Consensus        85 ~i~~~~~   91 (129)
T PF13306_consen   85 NIDIPSN   91 (129)
T ss_dssp             EEEETTT
T ss_pred             ccccCcc
Confidence            6666543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.57  E-value=0.053  Score=41.37  Aligned_cols=78  Identities=24%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             CCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCc---cc-ccC-------ccccCCCCccEEEecCCCCCC-
Q 047314           50 ECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTW---LK-KLP-------SSMGNLFNLQSLDLSSTLVDP-  112 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~---~~-~~p-------~~l~~l~~L~~L~l~~~~~~~-  112 (173)
                      .+..++.++++||.|. .    +...+.+-.+|+..+++.-.   .. ++|       +.+-+|+.|+.+++|+|.++. 
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~  107 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE  107 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence            3566677777777765 2    22333444555555554321   11 222       334556777777777774432 


Q ss_pred             CC-----------cceEEEeeceecc
Q 047314          113 IP-----------LLKHVCFNEFREM  127 (173)
Q Consensus       113 lp-----------~L~~L~l~~n~~~  127 (173)
                      .|           .|.||.+++|.+.
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlG  133 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLG  133 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCC
Confidence            22           5667777766554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=90.99  E-value=0.61  Score=30.59  Aligned_cols=61  Identities=18%  Similarity=0.322  Sum_probs=39.6

Q ss_pred             ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSST  108 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~  108 (173)
                      ..|..+++++.+.+..+ +..++.. +.+.+.++.+.+.. .+..++ ..+..+.+++.+.+..+
T Consensus        29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~   91 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN   91 (129)
T ss_dssp             TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT
T ss_pred             hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc
Confidence            46888989999999875 6655444 66677899999976 455554 45667899999998764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.16  E-value=0.19  Score=23.01  Aligned_cols=14  Identities=29%  Similarity=0.342  Sum_probs=8.1

Q ss_pred             CcccEEEecCcccc
Q 047314           52 RLLQVLDLEGVYMA   65 (173)
Q Consensus        52 ~~L~~L~l~~n~l~   65 (173)
                      ++|+.|++++|.++
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            56677777777665

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.55  E-value=0.011  Score=44.01  Aligned_cols=67  Identities=22%  Similarity=0.198  Sum_probs=37.9

Q ss_pred             ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC
Q 047314           48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP  114 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp  114 (173)
                      +..++..++||++.|.+..+-..+.-++.+..++++.|++..+|..++++..+..+++..|.....|
T Consensus        38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p  104 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQP  104 (326)
T ss_pred             hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCC
Confidence            3445566666666666554444455555555566666666666666666655555555555444444

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.24  E-value=0.29  Score=22.90  Aligned_cols=18  Identities=22%  Similarity=0.134  Sum_probs=13.7

Q ss_pred             CCCcCEEEEeceeeeccC
Q 047314          155 FSHLQFLKLSNIRVEERS  172 (173)
Q Consensus       155 l~~L~~L~l~~~~~~~~~  172 (173)
                      +++|++|+++.|...++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            467889999988876554

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=82.00  E-value=0.84  Score=21.63  Aligned_cols=17  Identities=18%  Similarity=0.217  Sum_probs=8.6

Q ss_pred             cccEEEecCcccccchh
Q 047314           53 LLQVLDLEGVYMALLDS   69 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~   69 (173)
                      +|+.|++++|+++.+|.
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            34555555555554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-05
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-04
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 51.5 bits (124), Expect = 2e-08
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 54  LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS 107
              L+L  V +         L HL+++ +    L +LP +M     L++L L+ 
Sbjct: 83  RVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR 136

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 49.9 bits (120), Expect = 7e-08
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 54  LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS 107
           LQ L LE   +  L +S+ NL +L+ L +R + L  L  ++ +L  L+ LDL  
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 3e-05
 Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 51  CRLLQVLDLEG----------VYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNL 100
              L+ L +            +           L++L+ L L  T ++ LP+S+ NL NL
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208

Query: 101 QSLDLSS 107
           +SL + +
Sbjct: 209 KSLKIRN 215

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 53  LLQVLDLEGVYMALLDSSVGNLIH--LRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST 108
             Q+    G  +      + +        L+LR   L + P     L +LQ + + + 
Sbjct: 57  NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA 114

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 51  CRLLQVLDLEGV-YMALLDSSVGNLIHLRYLDLRK-TWLKKLPSSMGNLFNLQSLDLSST 108
              L+ L L+    +  L   +  L  L  LDLR    L +LPS +  L     + +   
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 109 LVDPIP 114
           L   + 
Sbjct: 312 LQAQLD 317

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 33/154 (21%), Positives = 57/154 (37%), Gaps = 25/154 (16%)

Query: 21  LRELAISKAKEDRFLDIIHEDSNARFLAKECRL-LQVLDLEGVYMALLDSSV-GNLIHLR 78
           L+   I       F D+  ED +       C + ++ ++L+  Y   + S+       L+
Sbjct: 222 LKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQ 281

Query: 79  YLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLP 138
            LDL  T L +LPS +  L  L+ L LS+              N+F    +     ++ P
Sbjct: 282 ELDLTATHLSELPSGLVGLSTLKKLVLSA--------------NKFEN--LCQISASNFP 325

Query: 139 NLQKL-------IGTEMVCSSGRFSHLQFLKLSN 165
           +L  L                    +L+ L LS+
Sbjct: 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 10/103 (9%)

Query: 51  CRLLQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSS- 107
              L  LDL    +  +      +   L  L L    L  +  +       L+ L     
Sbjct: 56  LINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT 115

Query: 108 --TLVDPIPL-----LKHVCFNEFREMVVNPPVEASLPNLQKL 143
             + +D IPL     L+ +         +  P       L+ L
Sbjct: 116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 9/102 (8%)

Query: 51  CRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS--- 107
              L+ LDL    +A +     +   + ++ LR   L  +  ++    NL+  DL     
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249

Query: 108 ------TLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKL 143
                         ++ V     +++      E ++P L   
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 26/124 (20%), Positives = 42/124 (33%), Gaps = 27/124 (21%)

Query: 54  LQVLDLEGVYMAL----LDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST- 108
           +  +DL    + +    + SS+ +L  L  L L  + +    S      +L SLDLS   
Sbjct: 52  VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNS 111

Query: 109 LVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQ-------KLIGTEMVCSSGRFSHLQFL 161
           L  P+  L  +                S   L+        L     V    + + L+ L
Sbjct: 112 LSGPVTTLTSLG---------------SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVL 156

Query: 162 KLSN 165
            LS 
Sbjct: 157 DLSA 160

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 28/124 (22%), Positives = 42/124 (33%), Gaps = 28/124 (22%)

Query: 51  CRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSS-T 108
           C  L+ LD+     +     +G+   L++LD+    L      ++     L+ L++SS  
Sbjct: 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258

Query: 109 LVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQ-------KLIGTEMVCSSGRFSHLQFL 161
            V PIP                      L +LQ       K  G      SG    L  L
Sbjct: 259 FVGPIP-------------------PLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 162 KLSN 165
            LS 
Sbjct: 300 DLSG 303

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 9e-05
 Identities = 28/130 (21%), Positives = 40/130 (30%), Gaps = 36/130 (27%)

Query: 50  ECRLLQVLDL-----EGVYMALLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSL 103
               L+ L L     EG     +   +  +  L  L L    L  ++PS + N  NL  +
Sbjct: 440 SLSKLRDLKLWLNMLEGE----IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

Query: 104 DLSS-TLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLI-------GTEMVCSSGRF 155
            LS+  L   IP                      L NL  L        G  +    G  
Sbjct: 496 SLSNNRLTGEIP-------KWIG----------RLENLAILKLSNNSFSG-NIPAELGDC 537

Query: 156 SHLQFLKLSN 165
             L +L L+ 
Sbjct: 538 RSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 51  CRLLQVLDLEGVYM--ALLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSS 107
            + LQ L L        + D   G    L  LDL        +P   G+   L+SL LSS
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327

Query: 108 T-LVDPIP 114
                 +P
Sbjct: 328 NNFSGELP 335

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 39.1 bits (92), Expect = 4e-04
 Identities = 20/129 (15%), Positives = 34/129 (26%), Gaps = 35/129 (27%)

Query: 51  CRLLQVLDLEGVYM--ALLDSSVGNLIHLRYLDLRKTWL-KKLPSSM---GNLFNLQSLD 104
           C  L+ L++    +      S    L  L  LDL    +                L+ L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA 184

Query: 105 LSST-LVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQ-------KLIGTEMVCSSGRFS 156
           +S   +   + +                   +   NL+              +   G  S
Sbjct: 185 ISGNKISGDVDV-------------------SRCVNLEFLDVSSNNFSTG--IPFLGDCS 223

Query: 157 HLQFLKLSN 165
            LQ L +S 
Sbjct: 224 ALQHLDISG 232

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 38.0 bits (89), Expect = 8e-04
 Identities = 6/61 (9%), Positives = 16/61 (26%), Gaps = 4/61 (6%)

Query: 51  CRLLQVLDLEGVYMAL---LDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLS 106
             + +     G  +         +  L      ++           +  N  ++  LD+S
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640

Query: 107 S 107
            
Sbjct: 641 Y 641

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 51  CRLLQVLDLEGVYM---ALLDSSVGNLIHLRYLDLRKTWLKKL----PSSMGNLFNLQSL 103
              +  LDL G+ +     + SS+ NL +L +L +    +  L    P ++  L  L  L
Sbjct: 49  TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGG--INNLVGPIPPAIAKLTQLHYL 106

Query: 104 DLSST-LVDPIP 114
            ++ T +   IP
Sbjct: 107 YITHTNVSGAIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.1 bits (100), Expect = 3e-05
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 69  SSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSS-TLVDPIP 114
            ++  L  L YL +  T +   +P  +  +  L +LD S   L   +P
Sbjct: 95  PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 69  SSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSS-TLVDPIP 114
             +  +  L  LD     L   LP S+ +L NL  +      +   IP
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 37.9 bits (89), Expect = 8e-04
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 8/69 (11%)

Query: 51  CRLLQVLDLEGVYMALLD---SSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLS 106
            +  Q + L       L      VG   +L  LDLR   +   LP  +  L  L SL++S
Sbjct: 220 DKNTQKIHLAK---NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 107 S-TLVDPIP 114
              L   IP
Sbjct: 277 FNNLCGEIP 285

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 10/130 (7%)

Query: 54  LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS------ 107
           L+ LDL    +A +     +   + ++ LR   L  +  ++    NL+  DL        
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 108 ---TLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEM-VCSSGRFSHLQFLKL 163
                      ++ V     +++      E ++P L            +     L  LK 
Sbjct: 253 TLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKR 312

Query: 164 SNIRVEERSG 173
               +    G
Sbjct: 313 KEHALLSGQG 322

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 15/120 (12%)

Query: 54  LQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVD 111
           L +LDL    + ++ +     L  L Y  L    ++ L   S+  LFN++ L+L  +   
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSF-- 307

Query: 112 PIPLLKHVCFNEFREMVVNPPVEASLPNLQKL------IGTEMVCSSGRFSHLQFLKLSN 165
                + +      +  ++      L  L+ L      I            +L++L LSN
Sbjct: 308 ---TKQSISLASLPK--IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSN 362

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 38.1 bits (89), Expect = 8e-04
 Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 18/95 (18%)

Query: 51  CRLLQVLDLEGVYM-ALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSST 108
             +L+VL+L+   +  L D +     +L  L L    ++K+  +      NL +LDLS  
Sbjct: 72  LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS-- 129

Query: 109 LVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKL 143
                        N           +  L NLQ+L
Sbjct: 130 ------------HNGLSS--TKLGTQVQLENLQEL 150

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 9e-05
 Identities = 28/140 (20%), Positives = 42/140 (30%), Gaps = 24/140 (17%)

Query: 35  LDIIHEDSNARFLAKECRLLQVLDLEG---VYMALLDSSVGNLIHLRYLDLRKTWLKKLP 91
           L          F   +   L+ LDL      +      S      L+YLDL    +  + 
Sbjct: 330 LTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS 389

Query: 92  SSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKL------IG 145
           S+   L  L+ LD                 +  ++M     V  SL NL  L        
Sbjct: 390 SNFLGLEQLEHLDFQH--------------SNLKQM-SEFSVFLSLRNLIYLDISHTHTR 434

Query: 146 TEMVCSSGRFSHLQFLKLSN 165
                     S L+ LK++ 
Sbjct: 435 VAFNGIFNGLSSLEVLKMAG 454

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 2/61 (3%)

Query: 49  KECRLLQVLDLEGVYM-ALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLS 106
            E R L  LDL    +  L  ++  +L  L+ L++       L       L +LQ LD S
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 526

Query: 107 S 107
            
Sbjct: 527 L 527

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 5/37 (13%)

Query: 1   MELIERSMVQP-----IKTIQVHDLLRELAISKAKED 32
            E + +S++            +HDL  +    K    
Sbjct: 416 QEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNCSQ 452

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 7/42 (16%), Positives = 14/42 (33%)

Query: 68  DSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTL 109
           D     L +L  +D+        P+   N   L++  +    
Sbjct: 746 DFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 32/130 (24%)

Query: 51  CRLLQVLDLEGV-YMALLDSSVGNLIHLRYLDLR----------KTWLKKLPSSMGNLFN 99
            + L  ++L     M  L   + +L  L+ L++           K    +L         
Sbjct: 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPK 549

Query: 100 LQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQ 159
           +Q   +                N   E     P  ASL  + KL    + C   +  HL+
Sbjct: 550 IQIFYMGY--------------NNLEEF----PASASLQKMVKL--GLLDCVHNKVRHLE 589

Query: 160 -FLKLSNIRV 168
            F     +  
Sbjct: 590 AFGTNVKLTD 599

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 14/117 (11%)

Query: 54  LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI 113
           +  L +    +  L +    L   R L++    L  LP     L  L       T +  +
Sbjct: 63  ITTLVIPDNNLTSLPALPPEL---RTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL 119

Query: 114 P--LLK-HVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSS--GRFSHLQFLKLSN 165
           P  L K  +  N+         +    P LQ+L  ++   +S     S L  L   N
Sbjct: 120 PSGLCKLWIFGNQLTS------LPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN 170

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 51  CRLLQVLDLEGVYMALL--DSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST 108
             LL  +DL    +  L  D     L +L  +DL      K P+   N   L+   + + 
Sbjct: 487 TYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQ 546

Query: 109 L 109
            
Sbjct: 547 R 547

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 5/78 (6%), Positives = 22/78 (28%), Gaps = 3/78 (3%)

Query: 69  SSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS---TLVDPIPLLKHVCFNEFR 125
            S    +    +      +  +  ++  L  L+   + +      +     ++      +
Sbjct: 177 KSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQ 236

Query: 126 EMVVNPPVEASLPNLQKL 143
           +         +L +L  +
Sbjct: 237 QYKTEDLKWDNLKDLTDV 254

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 9/39 (23%), Positives = 18/39 (46%)

Query: 69  SSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS 107
           +S+  +  L  L+     L+    + G+   L SL+L+ 
Sbjct: 324 TSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 19/146 (13%)

Query: 38  IHEDSNARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP--SSMG 95
           +       +       L+ LDL      ++ ++   L  L++LD + + LK++   S+  
Sbjct: 362 LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFL 421

Query: 96  NLFNLQSLDLSSTLVDPIP--------LLKH--VCFNEFREMVVNPPVEASLPNLQKL-- 143
           +L  L  LD+S T               L    +  N F++      V A+  NL  L  
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN-TLSNVFANTTNLTFLDL 480

Query: 144 ----IGTEMVCSSGRFSHLQFLKLSN 165
               +             LQ L +S+
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSH 506

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 18/92 (19%)

Query: 54  LQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLVD 111
           L  LDL    +  +   V   L  L+ L++    L  L SS    L++L +LD S     
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS----- 529

Query: 112 PIPLLKHVCFNEFREMVVNPPVEASLPNLQKL 143
                    FN          ++    +L   
Sbjct: 530 ---------FNRIE--TSKGILQHFPKSLAFF 550

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 24/120 (20%)

Query: 54  LQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLVD 111
           ++ LDL   ++  L+S V   L  L+ L+L    + K+       L NLQ L+LS     
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN--- 324

Query: 112 PIPLLKHVCFNEFREMVVNPPVEASLPNLQKL------IGTEMVCSSGRFSHLQFLKLSN 165
              LL  +  + F            LP +  +      I      +      LQ L L +
Sbjct: 325 ---LLGELYSSNFYG----------LPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 27/122 (22%), Positives = 47/122 (38%), Gaps = 24/122 (19%)

Query: 54  LQVLDLEG--VYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLV 110
           LQ+L+L      + +   +  NL +LR LDL  + +  L       LF+L  L L     
Sbjct: 50  LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY---- 105

Query: 111 DPIPLLKHVCFNEFREMVVNPPVEASLPNLQKL------IGTEMVCSS-GRFSHLQFLKL 163
                     F    + V+      +L  L +L      I +  +  S G+ + L+ +  
Sbjct: 106 ----------FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155

Query: 164 SN 165
           S+
Sbjct: 156 SS 157

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 51  CRLLQVLDLEGVYMALLDSSV-GNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSST 108
           C  LQVL L+   +  ++     +L  L +LDL    L  L SS  G L +L+ L+L   
Sbjct: 49  CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN 108

Query: 109 LVDPIPL---------LKHVCF-NEFREMVVNPPVEASLPNLQKL 143
               + +         L+ +   N      +     A L +L +L
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 38.9 bits (91), Expect = 4e-04
 Identities = 11/54 (20%), Positives = 21/54 (38%)

Query: 54  LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS 107
           L+ L +    +  L+     +  L+ LDL    L  +  +      L++L L  
Sbjct: 274 LERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDH 327

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 10/109 (9%)

Query: 43  NARFLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQS 102
               L  E   ++VL L    + +L   +  L+ + +LDL    L+ LP ++  L  L+ 
Sbjct: 432 ENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEV 490

Query: 103 LDLSS---TLVDPIPLLKH-----VCFNEFREMVVNPPVEASLPNLQKL 143
           L  S      VD +  L       +C N  ++     P+  S P L  L
Sbjct: 491 LQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPL-VSCPRLVLL 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 27/142 (19%), Positives = 42/142 (29%), Gaps = 24/142 (16%)

Query: 33  RFLDIIHEDSNARFLAKECRLLQVLDLEG---VYMALLDSSVGNLIHLRYLDLRKTWLKK 89
           + L          F   +   L+ LDL      +      S      L+YLDL    +  
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

Query: 90  LPSSMGNLFNLQSLDLSSTLVDPIPLLKHVCFNEFREMVVNPPVEASLPNLQKL------ 143
           + S+   L  L+ LD   + +  +                   V  SL NL  L      
Sbjct: 388 MSSNFLGLEQLEHLDFQHSNLKQMS---------------EFSVFLSLRNLIYLDISHTH 432

Query: 144 IGTEMVCSSGRFSHLQFLKLSN 165
                       S L+ LK++ 
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAG 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.51
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.51
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.5
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.5
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.48
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.48
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.48
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.47
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.47
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.46
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.45
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.45
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.44
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.44
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.43
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.42
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.41
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.4
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.4
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.39
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.38
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.38
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.37
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.37
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.37
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.36
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.36
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.35
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.34
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.34
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.34
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.34
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.33
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.32
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.32
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.32
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.31
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.31
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.31
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.3
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.3
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.29
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.29
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.28
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.28
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.28
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.27
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.27
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.27
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.25
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.24
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.23
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.23
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.22
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.21
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.18
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.18
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.17
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.17
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.15
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.14
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.03
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.02
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.99
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.99
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.98
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.98
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.79
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.75
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.58
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.45
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.33
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.26
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.22
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.2
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.95
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.84
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.63
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.61
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.56
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.49
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.44
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.38
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.42
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.75
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.71
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	95.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.27
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.15
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.99
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.88
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.46
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	82.99

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=4.2e-15  Score=114.25  Aligned_cols=98  Identities=28%  Similarity=0.266  Sum_probs=52.2

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcc-cccCccccC---------CCCccEEEecCCCCCCCC-
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWL-KKLPSSMGN---------LFNLQSLDLSSTLVDPIP-  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~-~~~p~~l~~---------l~~L~~L~l~~~~~~~lp-  114 (173)
                      +.++.+++|++|++++|.++.+|..+.++++|+.|++++|.. ..+|..++.         +++|+.|++++|.+..+| 
T Consensus       121 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~  200 (328)
T 4fcg_A          121 DTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA  200 (328)
T ss_dssp             SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCG
T ss_pred             HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchH
Confidence            345666667777777776666666666666666666665432 244444332         555555555555444443 


Q ss_pred             ------cceEEEeeceeccccCCCCC-CCccccceeec
Q 047314          115 ------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       115 ------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                            +|+.|++++|.+.  .+|.. +.+++|++|++
T Consensus       201 ~l~~l~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~L  236 (328)
T 4fcg_A          201 SIANLQNLKSLKIRNSPLS--ALGPAIHHLPKLEELDL  236 (328)
T ss_dssp             GGGGCTTCCEEEEESSCCC--CCCGGGGGCTTCCEEEC
T ss_pred             hhcCCCCCCEEEccCCCCC--cCchhhccCCCCCEEEC
Confidence                  4444444444444  34333 44444444444

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=4.9e-15  Score=113.85  Aligned_cols=120  Identities=20%  Similarity=0.210  Sum_probs=93.9

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCC-CCC------------
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTL-VDP------------  112 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~-~~~------------  112 (173)
                      +.+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+|..++.+++|+.|++++|. ++.            
T Consensus        98 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A           98 DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             SCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            4466688888888888888888888888888888888888888888888888888888888862 333            


Q ss_pred             ----CCcceEEEeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314          113 ----IPLLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       113 ----lp~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                          +++|+.|++++|.+.  .+|.. +.+++|++|++     ..+|..+..+++|+.|+++++.
T Consensus       178 ~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCT
T ss_pred             hhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCc
Confidence                336788888888887  77777 88888888887     4566677788888888887754

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.54  E-value=7e-14  Score=103.35  Aligned_cols=121  Identities=24%  Similarity=0.266  Sum_probs=99.0

Q ss_pred             ccccCCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      ..+..+++|++|++++|.++.++ ..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|.+..+|        +
T Consensus        53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  132 (251)
T 3m19_A           53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTK  132 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCc
Confidence            46888999999999999998544 45788999999999999999776 45688999999999999776655        8


Q ss_pred             ceEEEeeceeccccCCCC-C-CCccccceeec-----cccc-cccCCCCCcCEEEEeceee
Q 047314          116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~~~  168 (173)
                      |+.|++++|.+.  .++. . +.+++|++|++     ..++ ..+..+++|+.|++++...
T Consensus       133 L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          133 LKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ccEEECcCCcCC--ccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            899999999998  6665 4 88899999998     3333 3578899999999987643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=2.5e-14  Score=99.53  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=101.7

Q ss_pred             CCCcccEEEecCcccc--cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCC-CC-------cceEE
Q 047314           50 ECRLLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDP-IP-------LLKHV  119 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-lp-------~L~~L  119 (173)
                      ..++++.|++++|.++  .+|..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.. +|       +|+.|
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            3478999999999998  8888888999999999999998877 778999999999999998877 55       89999


Q ss_pred             EeeceeccccCCC--CC-CCccccceeec-----ccccc----ccCCCCCcCEEEEeceeeecc
Q 047314          120 CFNEFREMVVNPP--VE-ASLPNLQKLIG-----TEMVC----SSGRFSHLQFLKLSNIRVEER  171 (173)
Q Consensus       120 ~l~~n~~~~~~lp--~~-~~l~~L~~L~l-----~~~~~----~l~~l~~L~~L~l~~~~~~~~  171 (173)
                      ++++|.+.  .++  .. +.+++|++|++     ...|.    .+..+++|+.|+++++...+.
T Consensus       101 ~Ls~N~l~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          101 NLSGNKLK--DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             ECBSSSCC--SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             eccCCccC--cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            99999998  555  45 88999999999     34454    688899999999998876543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.52  E-value=1.7e-13  Score=102.53  Aligned_cols=119  Identities=24%  Similarity=0.266  Sum_probs=74.6

Q ss_pred             ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      +.+..+++|++|++++|.++.+++. +..+++|+.|++++|.+..+|. .++.+++|+.|++++|.+..++        +
T Consensus        79 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  158 (272)
T 3rfs_A           79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTN  158 (272)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCcc
Confidence            4456666677777777766644443 5666777777777776665543 3566677777777777554443        6


Q ss_pred             ceEEEeeceeccccCCCC-C-CCccccceeec-----ccc-ccccCCCCCcCEEEEece
Q 047314          116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEM-VCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~-~~~l~~l~~L~~L~l~~~  166 (173)
                      |+.|++++|.+.  .++. . +.+++|++|++     ... +..+..+++|+.|+++++
T Consensus       159 L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          159 LTELDLSYNQLQ--SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCCcC--ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence            777777777776  4443 3 66677777776     222 333567777777777664

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.51  E-value=1.6e-13  Score=100.29  Aligned_cols=115  Identities=24%  Similarity=0.235  Sum_probs=97.8

Q ss_pred             CCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314           51 CRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVC  120 (173)
Q Consensus        51 l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~  120 (173)
                      .++|++|++++|.++.+ |..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+..++        +|+.|+
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            37899999999999954 6678899999999999999998875 4688999999999999776665        899999


Q ss_pred             eeceeccccCCCCC-CCccccceeec-----cccc-cccCCCCCcCEEEEecee
Q 047314          121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~~  167 (173)
                      +++|.+.  .+|.. ..+++|++|++     ..++ ..+..+++|+.|++++..
T Consensus       119 Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          119 MCCNKLT--ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCSSCCC--SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             ccCCccc--ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            9999999  88888 89999999998     3444 457889999999998754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.51  E-value=1.7e-13  Score=103.56  Aligned_cols=115  Identities=23%  Similarity=0.208  Sum_probs=58.1

Q ss_pred             cCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEE
Q 047314           49 KECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHV  119 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L  119 (173)
                      +.+++|++|++++|.++.+|..+..+++|+.|++++|+++.+| ..+..+++|+.|++++|.+..+|        +|+.|
T Consensus        74 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence            3444455555555554444444455555555555555555443 33455555555555555444333        45555


Q ss_pred             EeeceeccccCCCCC--CCccccceeec-----cccccccCCCCCcCEEEEec
Q 047314          120 CFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~  165 (173)
                      ++++|.+.  .+|..  ..+++|+.|++     ..+|..+..+++|+.+++++
T Consensus       154 ~L~~N~l~--~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~  204 (290)
T 1p9a_G          154 SLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHG  204 (290)
T ss_dssp             ECTTSCCS--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCS
T ss_pred             ECCCCcCC--ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCC
Confidence            55555555  44432  44555555555     34455555555555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.50  E-value=6.3e-14  Score=106.92  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=26.1

Q ss_pred             ccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCC
Q 047314           48 AKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTL  109 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~  109 (173)
                      ++.+++|++|++++|.++ ..|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus        97 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~  160 (313)
T 1ogq_A           97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             GGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred             HhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence            334444444444444443 33444444444444444444443 334444444444444444443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.50  E-value=1.8e-13  Score=103.47  Aligned_cols=121  Identities=25%  Similarity=0.253  Sum_probs=100.0

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cce
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLK  117 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~  117 (173)
                      ..+..+++|+.|++++|.++.++.. ..+++|+.|++++|.+..+|..+..+++|+.|++++|.+..+|        +|+
T Consensus        49 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~  127 (290)
T 1p9a_G           49 ATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (290)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             HHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCC
Confidence            4688889999999999998866554 7788999999999999988888889999999999999777665        899


Q ss_pred             EEEeeceeccccCCCCC--CCccccceeec-----cccccc-cCCCCCcCEEEEeceeee
Q 047314          118 HVCFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~~~  169 (173)
                      .|++++|.+.  .+|..  ..+++|+.|++     ..+|.. +..+++|+.|+++++...
T Consensus       128 ~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          128 ELYLKGNELK--TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             EEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEECCCCCCC--ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC
Confidence            9999999998  66654  78899999998     455544 578999999999876543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.49  E-value=3.1e-13  Score=98.21  Aligned_cols=114  Identities=19%  Similarity=0.232  Sum_probs=93.7

Q ss_pred             CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      ++++.|++++|.++.+++ .+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+|        +|+.|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            578999999999996555 688899999999999998855 778899999999999999877665        7899999


Q ss_pred             eceeccccCC-CCC-CCccccceeec-----cccc-cccCCCCCcCEEEEecee
Q 047314          122 NEFREMVVNP-PVE-ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       122 ~~n~~~~~~l-p~~-~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~~  167 (173)
                      ++|.+.  .+ |.. +.+++|+.|++     ..++ ..+..+++|+.|++++..
T Consensus       112 ~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          112 NANKIN--CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCCC--EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            999998  45 445 88899999998     3333 347889999999988754

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.48  E-value=6.2e-14  Score=106.94  Aligned_cols=120  Identities=19%  Similarity=0.265  Sum_probs=85.7

Q ss_pred             ccccCCCcccEEEecC-cccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------
Q 047314           46 FLAKECRLLQVLDLEG-VYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~-n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------  114 (173)
                      +.++.+++|++|++++ |.++ .+|..+.++++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|       
T Consensus        70 ~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~  149 (313)
T 1ogq_A           70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP  149 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred             hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence            4577788888888884 7777 77888888888888888888887 77778888888888888888654 333       


Q ss_pred             cceEEEeeceeccccCCCCC-CCcc-ccceeec------cccccccCCCCCcCEEEEecee
Q 047314          115 LLKHVCFNEFREMVVNPPVE-ASLP-NLQKLIG------TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       115 ~L~~L~l~~n~~~~~~lp~~-~~l~-~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                      +|+.|++++|.+.+ .+|.. +.++ +|+.|++      +..|..+..++ |+.|+++++.
T Consensus       150 ~L~~L~L~~N~l~~-~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~  208 (313)
T 1ogq_A          150 NLVGITFDGNRISG-AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM  208 (313)
T ss_dssp             TCCEEECCSSCCEE-ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred             CCCeEECcCCcccC-cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence            78888888888776 66666 6665 7777777      23444444444 5555554443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.48  E-value=4.3e-13  Score=100.08  Aligned_cols=118  Identities=22%  Similarity=0.245  Sum_probs=62.5

Q ss_pred             cccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cc
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      .|..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..+|. .+..+++|+.|++++|.+..++        +|
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  135 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL  135 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCC
Confidence            455666666666666666654444 3456666666666666655443 3355566666666655443332        55


Q ss_pred             eEEEeeceeccccCCCCC--CCccccceeec-----ccccc-ccCCCCCcCEEEEece
Q 047314          117 KHVCFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNI  166 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~  166 (173)
                      +.|++++|.+.  .+|..  +.+++|+.|++     ..++. .+..+++|+.|+++++
T Consensus       136 ~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          136 TYLSLGYNELQ--SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCC--ccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            55555555555  34332  45555555555     12222 2444555555555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.48  E-value=4.6e-13  Score=100.12  Aligned_cols=121  Identities=22%  Similarity=0.247  Sum_probs=101.7

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      +.+..+++|++|++++|.++.+ +.+..+++|++|++++|.++.++. .++.+++|+.|++++|.+..++        +|
T Consensus        57 ~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  135 (272)
T 3rfs_A           57 QGIQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL  135 (272)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccccCCCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence            5688899999999999999875 478899999999999999997765 4689999999999999776654        89


Q ss_pred             eEEEeeceeccccCCCC-C-CCccccceeec-----cccc-cccCCCCCcCEEEEeceeee
Q 047314          117 KHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~~~~  169 (173)
                      +.|++++|.+.  .++. . +.+++|+.|++     ..++ ..++.+++|+.|+++++...
T Consensus       136 ~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          136 TYLNLAHNQLQ--SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             CEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CEEECCCCccC--ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            99999999998  5654 4 88999999999     3333 34688999999999987543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.47  E-value=3.3e-13  Score=101.31  Aligned_cols=61  Identities=28%  Similarity=0.413  Sum_probs=24.2

Q ss_pred             ccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCc-cccc-CccccCCCCccEEEecCC
Q 047314           48 AKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTW-LKKL-PSSMGNLFNLQSLDLSST  108 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~-~~~~-p~~l~~l~~L~~L~l~~~  108 (173)
                      +..+++|++|++++|.++.+ |..+..+++|+.|++++|. +..+ |..+..+++|+.|++++|
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n  115 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC  115 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCC
Confidence            33444444444444444422 3333444444444444443 3322 233333444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.47  E-value=2.4e-13  Score=96.98  Aligned_cols=120  Identities=15%  Similarity=0.139  Sum_probs=95.7

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCCC--------CCcc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVDP--------IPLL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~--------lp~L  116 (173)
                      +.+..+++|++|++++|.++.++ .+..+++|+.|++++|.++ ..|..++.+++|+.|++++|.+..        +++|
T Consensus        60 ~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L  138 (197)
T 4ezg_A           60 TGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV  138 (197)
T ss_dssp             TTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSC
T ss_pred             HHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCC
Confidence            45778899999999999776554 6888999999999999988 468888999999999999997654        3389


Q ss_pred             eEEEeecee-ccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314          117 KHVCFNEFR-EMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       117 ~~L~l~~n~-~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      +.|++++|. +.  .++..+.+++|++|++     ..++ .+..+++|+.|++++....
T Consensus       139 ~~L~L~~n~~i~--~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          139 NSIDLSYNGAIT--DIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CEEECCSCTBCC--CCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC---
T ss_pred             CEEEccCCCCcc--ccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccC
Confidence            999999997 66  6662288899999998     3333 6788999999999887654

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.47  E-value=3.9e-14  Score=96.63  Aligned_cols=113  Identities=19%  Similarity=0.181  Sum_probs=94.7

Q ss_pred             CCCcccEEEecCcccc--cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCC-CC-------cceEE
Q 047314           50 ECRLLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDP-IP-------LLKHV  119 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~-lp-------~L~~L  119 (173)
                      ..++++.|++++|.++  .+|..+..+++|+.|++++|.++.+ ..++.+++|+.|++++|.+.. +|       +|+.|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3467999999999998  7888888999999999999998876 778899999999999998877 44       89999


Q ss_pred             EeeceeccccCCC--CC-CCccccceeec-----ccccc----ccCCCCCcCEEEEec
Q 047314          120 CFNEFREMVVNPP--VE-ASLPNLQKLIG-----TEMVC----SSGRFSHLQFLKLSN  165 (173)
Q Consensus       120 ~l~~n~~~~~~lp--~~-~~l~~L~~L~l-----~~~~~----~l~~l~~L~~L~l~~  165 (173)
                      ++++|.+.  .++  .. +.+++|++|++     ...|.    .+..+++|+.|++++
T Consensus        94 ~ls~N~i~--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIK--DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCC--SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCC--ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999998  443  55 88999999998     33443    578899999998764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.47  E-value=1.8e-13  Score=112.41  Aligned_cols=114  Identities=20%  Similarity=0.198  Sum_probs=95.3

Q ss_pred             cccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEEee
Q 047314           53 LLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFN  122 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~  122 (173)
                      .+++|++++|.|+.+|+ +|.++++|++|++++|.++.+|+ .|..+++|++|++++|.+..+|        +|++|+++
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls  132 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV  132 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence            78999999999996654 68899999999999999997754 6889999999999999877665        89999999


Q ss_pred             ceeccccCCCC-C-CCccccceeec-------cccccccCCCCCcCEEEEeceee
Q 047314          123 EFREMVVNPPV-E-ASLPNLQKLIG-------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       123 ~n~~~~~~lp~-~-~~l~~L~~L~l-------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      +|.+.  .++. . +++++|++|++       ...|..++.+++|++|+++++..
T Consensus       133 ~N~l~--~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          133 ETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TSCCC--CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCcCC--CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            99998  6665 3 88999999998       23466788899999999887653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=4.4e-14  Score=99.16  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=99.7

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCC-CCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLI-HLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~-~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      +.+.++.+|+.|++++|.++.+|. +..+. +|+.|++++|.++.+ ..++.+++|+.|++++|.+..+|        +|
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             HhcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            456778899999999999997754 55554 899999999999877 67889999999999999887665        89


Q ss_pred             eEEEeeceeccccCCCC--C-CCccccceeec-----cccccc----cCCCCCcCEEEEeceeeec
Q 047314          117 KHVCFNEFREMVVNPPV--E-ASLPNLQKLIG-----TEMVCS----SGRFSHLQFLKLSNIRVEE  170 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l-----~~~~~~----l~~l~~L~~L~l~~~~~~~  170 (173)
                      +.|++++|.+.  .+|.  . +.+++|+.|++     ...|..    +..+++|+.|+++++...+
T Consensus        91 ~~L~L~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           91 TELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CEEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CEEECCCCcCC--cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999997  7776  5 88899999998     444553    7889999999998876543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.46  E-value=6e-13  Score=99.86  Aligned_cols=121  Identities=23%  Similarity=0.237  Sum_probs=93.9

Q ss_pred             ccccCCCcccEEEecCcc-cccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------
Q 047314           46 FLAKECRLLQVLDLEGVY-MALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------  114 (173)
                      ..+..+++|++|++++|. ++.+ |..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+..++        
T Consensus        74 ~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  153 (285)
T 1ozn_A           74 AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG  153 (285)
T ss_dssp             TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCC
Confidence            467888888999998887 7754 66688888899999888888855 566788888899998888665544        


Q ss_pred             cceEEEeeceeccccCCCC-C-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314          115 LLKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       115 ~L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      +|+.|++++|.+.  .++. . ..+++|+.|++      +..|..+..+++|+.|+++++..
T Consensus       154 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  213 (285)
T 1ozn_A          154 NLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (285)
T ss_dssp             TCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CccEEECCCCccc--ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence            7888888888887  5554 3 77888888888      23366788888888888887644

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=4e-13  Score=97.63  Aligned_cols=115  Identities=15%  Similarity=0.144  Sum_probs=90.1

Q ss_pred             CcccEEEecCcccccch--hhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314           52 RLLQVLDLEGVYMALLD--SSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVC  120 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~--~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~  120 (173)
                      ..++.|++++|.++.++  ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++        +|+.|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  111 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM  111 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEE
Confidence            35678999999988553  237788899999999998886654 7888899999999998776655        788999


Q ss_pred             eeceeccccCCCCC-CCccccceeec-----cc-cccccCCCCCcCEEEEecee
Q 047314          121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TE-MVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~-~~~~l~~l~~L~~L~l~~~~  167 (173)
                      +++|.+.+ ..|.. ..+++|+.|++     .. .|..+..+++|+.|++++..
T Consensus       112 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          112 LRSNRITC-VGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CTTSCCCC-BCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CCCCcCCe-ECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            99998883 33555 88889999988     23 36678889999999888754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.45  E-value=2.1e-13  Score=101.73  Aligned_cols=118  Identities=17%  Similarity=0.119  Sum_probs=79.6

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.+|....  ++|+.|++++|.+..++      +|+.|
T Consensus        57 ~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L  133 (263)
T 1xeu_A           57 AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEIL  133 (263)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEE
T ss_pred             hHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEE
Confidence            446667777777777777776655 6777777777777777776654322  67777777777665544      67777


Q ss_pred             EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      ++++|.+.  .++..+.+++|+.|++     ... ..+..+++|+.|++++....
T Consensus       134 ~Ls~N~i~--~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          134 SIRNNKLK--SIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ECTTSCCC--BCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred             ECCCCcCC--CChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence            77777777  4442266777777777     222 45777888888888776543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.45  E-value=8.5e-13  Score=97.49  Aligned_cols=116  Identities=23%  Similarity=0.337  Sum_probs=98.4

Q ss_pred             CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      +.++.|++++|.++.+ +..+.++++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++        +|+.|++
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  114 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL  114 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence            5799999999999954 456899999999999999999665 55799999999999999877665        8999999


Q ss_pred             eceeccccCCCCC--CCccccceeec-----ccccc-ccCCCCCcCEEEEeceeee
Q 047314          122 NEFREMVVNPPVE--ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       122 ~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~~~  169 (173)
                      ++|.+.  .++..  +.+++|+.|++     ..+|. .++.+++|+.|+++++...
T Consensus       115 ~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A          115 GGNQLK--SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             CSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCcCC--CcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            999999  66654  78999999999     44444 5889999999999987543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=5.8e-13  Score=100.66  Aligned_cols=95  Identities=23%  Similarity=0.229  Sum_probs=50.8

Q ss_pred             cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEE
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVC  120 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~  120 (173)
                      .+..+++|+.|++++|.++.+++ +..+++|+.|++++|.++.+|. +..+++|+.|++++|.+..++      +|+.|+
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~  140 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLY  140 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEE
T ss_pred             hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCChhhcCCCCCCEEE
Confidence            35556666666666666665444 5566666666666665555432 555555666666555544433      455555


Q ss_pred             eeceeccccCCCCCCCccccceeec
Q 047314          121 FNEFREMVVNPPVEASLPNLQKLIG  145 (173)
Q Consensus       121 l~~n~~~~~~lp~~~~l~~L~~L~l  145 (173)
                      +++|.+.  .++..+.+++|+.|++
T Consensus       141 l~~n~l~--~~~~l~~l~~L~~L~L  163 (291)
T 1h6t_A          141 LGNNKIT--DITVLSRLTKLDTLSL  163 (291)
T ss_dssp             CCSSCCC--CCGGGGGCTTCSEEEC
T ss_pred             ccCCcCC--cchhhccCCCCCEEEc
Confidence            5555554  2211144444444444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.44  E-value=1.2e-12  Score=97.69  Aligned_cols=120  Identities=23%  Similarity=0.257  Sum_probs=101.0

Q ss_pred             ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      ..|..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..+| ..++.+++|+.|++++|.+..+|        +
T Consensus        79 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  158 (270)
T 2o6q_A           79 GIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS  158 (270)
T ss_dssp             TTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcc
Confidence            4578899999999999999976654 678999999999999999775 45789999999999999776655        8


Q ss_pred             ceEEEeeceeccccCCCC-C-CCccccceeec-----ccccc-ccCCCCCcCEEEEecee
Q 047314          116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~  167 (173)
                      |+.|++++|.+.  .++. . ..+++|++|++     ..+|. .+..+++|+.|++++..
T Consensus       159 L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          159 LKELRLYNNQLK--RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cceeEecCCcCc--EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            999999999998  6665 3 78999999999     34444 47889999999998754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.44  E-value=4.7e-13  Score=113.27  Aligned_cols=122  Identities=25%  Similarity=0.281  Sum_probs=98.1

Q ss_pred             ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCC-CCC-------c
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVD-PIP-------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~-~lp-------~  115 (173)
                      ..++.+++|++|++++|.++ ..|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+. .+|       +
T Consensus       412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  491 (768)
T 3rgz_A          412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN  491 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence            45777888888888888887 67777888888888888888877 67788888888888888888665 344       7


Q ss_pred             ceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314          116 LKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      |+.|++++|.+.+ .+|.. +.+++|++|++      +.+|..++.+++|+.|+++++..
T Consensus       492 L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  550 (768)
T 3rgz_A          492 LNWISLSNNRLTG-EIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF  550 (768)
T ss_dssp             CCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEE
T ss_pred             CCEEEccCCccCC-cCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCcc
Confidence            8888888888886 67777 88888888888      56788888889999998887754

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=1.6e-12  Score=93.27  Aligned_cols=115  Identities=25%  Similarity=0.294  Sum_probs=89.8

Q ss_pred             CCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314           51 CRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------LLKHVC  120 (173)
Q Consensus        51 l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~L~~L~  120 (173)
                      .+++++|++++|.++.++.. +..+++|+.|++++|.++.+|.. +..+++|++|++++|.+..++        +|+.|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            45788999999988865554 67888999999999988877654 578889999999988766554        788999


Q ss_pred             eeceeccccCCCC-C-CCccccceeec-----cccccc-cCCCCCcCEEEEecee
Q 047314          121 FNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIR  167 (173)
Q Consensus       121 l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~  167 (173)
                      +++|.+.  .++. . +.+++|+.|++     ..++.. +..+++|+.|++++..
T Consensus       107 L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  159 (208)
T 2o6s_A          107 LNTNQLQ--SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP  159 (208)
T ss_dssp             CCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             cCCCcCc--ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCC
Confidence            9999888  5554 3 78888999988     334443 7788899999888753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.43  E-value=7.8e-13  Score=100.66  Aligned_cols=116  Identities=24%  Similarity=0.228  Sum_probs=63.8

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+++|++|++++|.++.+++ +..+++|+.|++++|.++.++ .+..+++|+.|++++|.+..++      +|+.|
T Consensus        57 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L  134 (308)
T 1h6u_A           57 EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (308)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEE
Confidence            345566666666666666665555 666666666666666665543 4556666666666666554433      55566


Q ss_pred             EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      ++++|.+.  .++..+.+++|+.|++     ..++. +..+++|+.|+++++
T Consensus       135 ~l~~n~l~--~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          135 YLDLNQIT--NISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN  183 (308)
T ss_dssp             ECCSSCCC--CCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ECCCCccC--cCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC
Confidence            66655555  3322244455555555     12222 444455555554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.42  E-value=1.5e-12  Score=97.00  Aligned_cols=118  Identities=19%  Similarity=0.224  Sum_probs=101.5

Q ss_pred             cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEEe
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCF  121 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l  121 (173)
                      .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+|. +..+++|+.|++++|.+..+|     +|+.|++
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L  113 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFL  113 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEEC
T ss_pred             chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccccCcccEEEc
Confidence            4678899999999999999877 78899999999999999998877 899999999999999887776     8999999


Q ss_pred             eceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314          122 NEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       122 ~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      ++|.+.  .++..+.+++|+.|++     ..++ .+..+++|+.|+++++...
T Consensus       114 ~~N~l~--~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~  163 (263)
T 1xeu_A          114 DNNELR--DTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT  163 (263)
T ss_dssp             CSSCCS--BSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC
T ss_pred             cCCccC--CChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc
Confidence            999998  5543388999999999     3444 6888999999999987654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.42  E-value=3.2e-13  Score=102.29  Aligned_cols=61  Identities=23%  Similarity=0.224  Sum_probs=30.7

Q ss_pred             ccCCCcccEEEecCcccccc---hhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCC
Q 047314           48 AKECRLLQVLDLEGVYMALL---DSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST  108 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~---~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~  108 (173)
                      |.++++|++|++++|.++..   +..+..+++|+.|++++|.+..+|..+..+++|+.|++++|
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n  111 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS  111 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCC
Confidence            45555566666655555422   33444455555555555554444444444445555555444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.42  E-value=7.5e-13  Score=102.27  Aligned_cols=118  Identities=23%  Similarity=0.176  Sum_probs=63.3

Q ss_pred             cccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC---------c
Q 047314           47 LAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP---------L  115 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp---------~  115 (173)
                      .+.++++|++|++++|.++.+ |..+.++++|++|++++|.++.+|.. ++.+++|+.|++++|.+..+|         +
T Consensus        71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence            455566666666666665533 33455566666666666666555543 455666666666665443322         5


Q ss_pred             ceEEEeecee-ccccCC-CCC-CCccccceeec------cccccccCCCCCcCEEEEece
Q 047314          116 LKHVCFNEFR-EMVVNP-PVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       116 L~~L~l~~n~-~~~~~l-p~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      |+.|++++|. +.  .+ +.. +.+++|+.|++      +..|..++.+++|++|+++++
T Consensus       151 L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  208 (353)
T 2z80_A          151 LQILRVGNMDTFT--KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK  208 (353)
T ss_dssp             CCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred             CcEEECCCCcccc--ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence            5666666552 33  23 223 55556666655      122445555555555555544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.42  E-value=9.8e-13  Score=99.60  Aligned_cols=119  Identities=23%  Similarity=0.229  Sum_probs=76.8

Q ss_pred             cccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCcccc--cCccccCCCCccEEEecCCCCCCC--------Cc
Q 047314           47 LAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKK--LPSSMGNLFNLQSLDLSSTLVDPI--------PL  115 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~~--~p~~l~~l~~L~~L~l~~~~~~~l--------p~  115 (173)
                      .+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+..  .|..+..+++|+.|++++|.+..+        ++
T Consensus       121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence            4566667777777777666 444456666777777777776653  566667777777777777755443        26


Q ss_pred             ceEEEeeceeccccCCCC-C-CCccccceeec------cccccccCCCC-CcCEEEEecee
Q 047314          116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG------TEMVCSSGRFS-HLQFLKLSNIR  167 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l------~~~~~~l~~l~-~L~~L~l~~~~  167 (173)
                      |+.|++++|.+.  .++. . ..+++|+.|++      +..|..+..++ +|+.|++++..
T Consensus       201 L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          201 LQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCEEECTTSCCS--BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCEEECCCCccC--ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            777777777776  4444 3 66677777777      33455566663 77777776654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.41  E-value=7.8e-13  Score=111.90  Aligned_cols=62  Identities=23%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             cccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCC
Q 047314           47 LAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSST  108 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~  108 (173)
                      .+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+. .+|..++.+++|+.|++++|
T Consensus       485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            3455555555555555555 45555555555555555555554 44545555555555544444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.40  E-value=2.8e-12  Score=97.61  Aligned_cols=116  Identities=21%  Similarity=0.264  Sum_probs=55.7

Q ss_pred             ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEe
Q 047314           48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCF  121 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l  121 (173)
                      +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++. ++.+++|+.|++++|.+..++      +|+.|++
T Consensus       103 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l  180 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA  180 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred             hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEEC
Confidence            3334444444444444443322 4444444444444444443332 444445555555555433332      4555555


Q ss_pred             eceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.  .++....+++|++|++     ...+ .+..+++|+.|+++++..
T Consensus       181 ~~n~l~--~~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          181 DDNKIS--DISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CSSCCC--CCGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred             CCCccC--cChhhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence            555554  3332244556666665     2223 356677777777766654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.40  E-value=1.3e-12  Score=104.25  Aligned_cols=63  Identities=25%  Similarity=0.301  Sum_probs=29.7

Q ss_pred             ccccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCC
Q 047314           46 FLAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSST  108 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~  108 (173)
                      ..|..+++|+.|++++|.++. .+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus        93 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  157 (452)
T 3zyi_A           93 DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN  157 (452)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSC
T ss_pred             HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCC
Confidence            344555555555555555552 22334445555555555554444432 2344444444444444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.40  E-value=3.6e-12  Score=96.27  Aligned_cols=119  Identities=20%  Similarity=0.192  Sum_probs=101.2

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+++|+.|++++|.++.++. +..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..++      +|+.|
T Consensus        84 ~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L  161 (291)
T 1h6t_A           84 KPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL  161 (291)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             cccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcchhhccCCCCCEE
Confidence            348899999999999999987654 89999999999999999876 46889999999999999877665      89999


Q ss_pred             EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      ++++|.+.  .++....+++|+.|++     ..++ .+..+++|+.|+++++...
T Consensus       162 ~L~~N~l~--~~~~l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          162 SLEDNQIS--DIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSSCCC--CCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEE
T ss_pred             EccCCccc--cchhhcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCccc
Confidence            99999998  4543477899999999     3444 4889999999999987653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.39  E-value=1.4e-12  Score=97.50  Aligned_cols=99  Identities=24%  Similarity=0.194  Sum_probs=47.8

Q ss_pred             cccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           47 LAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      .+..+++|++|++++|.++.++. .+..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++        +|
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTC
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCC
Confidence            34455555555555555553222 3445555555555555555332 34455555555555555333222        45


Q ss_pred             eEEEeeceeccccCCCCC-CCccccceeec
Q 047314          117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      +.|++++|.+....+|.. +.+++|++|++
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~L  156 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEEC
Confidence            555555555542223444 45555555555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.39  E-value=5.5e-13  Score=110.75  Aligned_cols=121  Identities=14%  Similarity=0.117  Sum_probs=103.5

Q ss_pred             ccccCCCcccEEEecCccccc------------------chhhhC--CCCCCcEEeccCCccc-ccCccccCCCCccEEE
Q 047314           46 FLAKECRLLQVLDLEGVYMAL------------------LDSSVG--NLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLD  104 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~--~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~  104 (173)
                      +.++++++|++|++++|.++.                  +|..++  ++++|++|++++|.+. .+|..++.+++|+.|+
T Consensus       200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  279 (636)
T 4eco_A          200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN  279 (636)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred             HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence            458899999999999999996                  999988  9999999999999866 8899999999999999


Q ss_pred             ecCCC-CCC--C-------------CcceEEEeeceeccccCCCC--C-CCccccceeec------cccccccCCCCCcC
Q 047314          105 LSSTL-VDP--I-------------PLLKHVCFNEFREMVVNPPV--E-ASLPNLQKLIG------TEMVCSSGRFSHLQ  159 (173)
Q Consensus       105 l~~~~-~~~--l-------------p~L~~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l------~~~~~~l~~l~~L~  159 (173)
                      +++|. +..  +             ++|+.|++++|.+.  .+|.  . +.+++|++|++      +.+| .++.+++|+
T Consensus       280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            99997 664  3             37899999999998  8888  7 88999999988      3677 778888888


Q ss_pred             EEEEeceeee
Q 047314          160 FLKLSNIRVE  169 (173)
Q Consensus       160 ~L~l~~~~~~  169 (173)
                      .|+++++...
T Consensus       357 ~L~L~~N~l~  366 (636)
T 4eco_A          357 SLNLAYNQIT  366 (636)
T ss_dssp             EEECCSSEEE
T ss_pred             EEECCCCccc
Confidence            8888876543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.39  E-value=2.1e-12  Score=102.95  Aligned_cols=44  Identities=23%  Similarity=0.252  Sum_probs=21.2

Q ss_pred             cccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCccccc
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKL   90 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~   90 (173)
                      .|.++++|++|++++|.++.+|.. +..+++|+.|++++|.+..+
T Consensus       118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  162 (452)
T 3zyi_A          118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI  162 (452)
T ss_dssp             TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE
T ss_pred             hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee
Confidence            344455555555555555533332 44455555555555544433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.38  E-value=2.5e-12  Score=91.50  Aligned_cols=92  Identities=23%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             cccEEEecCcccccchhh--hCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           53 LLQVLDLEGVYMALLDSS--VGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~--~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      +++.|++++|.++.+++.  +..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+..++        +|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            455555555555543332  44555555555555555533 444555555555555555433222        4555555


Q ss_pred             eceeccccCCCCC-CCccccceeec
Q 047314          122 NEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       122 ~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      ++|.+.+ ..|.. +.+++|++|++
T Consensus       110 ~~N~l~~-~~~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A          110 YDNQISC-VMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CSSCCCE-ECTTSSTTCTTCCEEEC
T ss_pred             CCCcCCe-eCHHHhhcCCCCCEEEe
Confidence            5555553 22333 44455555544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=2.9e-12  Score=101.82  Aligned_cols=65  Identities=23%  Similarity=0.266  Sum_probs=35.2

Q ss_pred             ccccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLV  110 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~  110 (173)
                      ..|..+++|++|++++|.++.+ +..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.+
T Consensus        82 ~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i  148 (440)
T 3zyj_A           82 NSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI  148 (440)
T ss_dssp             TTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred             HHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence            3455566666666666665532 3345555556666665555554443 345555555555555533

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.38  E-value=2.8e-12  Score=101.88  Aligned_cols=121  Identities=21%  Similarity=0.168  Sum_probs=66.8

Q ss_pred             ccccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccCc-c-------------------------ccCCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLPS-S-------------------------MGNLF   98 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~-~-------------------------l~~l~   98 (173)
                      ..|.++++|++|++++|.++.+|. .+..+++|+.|++++|.+..+|. .                         +..++
T Consensus       106 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          106 GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             hhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            345666666666666666664444 35566666666666665554432 3                         34455


Q ss_pred             CccEEEecCCCCCCCC------cceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEec
Q 047314           99 NLQSLDLSSTLVDPIP------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSN  165 (173)
Q Consensus        99 ~L~~L~l~~~~~~~lp------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~  165 (173)
                      +|+.|++++|.+..+|      +|+.|++++|.+.+ ..|.. ..+++|+.|++      ...+..+.++++|+.|++++
T Consensus       186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSA-IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             ccCeecCCCCcCccccccCCCcccCEEECCCCccCc-cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            5555555555544444      55666666666552 22333 55566666665      12233455666666666655


Q ss_pred             ee
Q 047314          166 IR  167 (173)
Q Consensus       166 ~~  167 (173)
                      +.
T Consensus       265 N~  266 (440)
T 3zyj_A          265 NN  266 (440)
T ss_dssp             SC
T ss_pred             CC
Confidence            43

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=3.9e-12  Score=90.65  Aligned_cols=92  Identities=26%  Similarity=0.311  Sum_probs=62.2

Q ss_pred             CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEee
Q 047314           52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFN  122 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~  122 (173)
                      ++++.|++++|.++.+|..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|.+..++        +|+.|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            4677777777777766666777777777777777777554 45677777777777777655443        67777777


Q ss_pred             ceeccccCCCCC--CCccccceeec
Q 047314          123 EFREMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       123 ~n~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      +|.+.  .+|..  ..+++|+.|++
T Consensus       111 ~N~l~--~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A          111 GNDIS--VVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             SSCCC--BCCTTTTTTCTTCCEEEC
T ss_pred             CCCCC--eeChhhhhcCccccEEEe
Confidence            77776  45542  56666776666

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.38  E-value=1e-12  Score=108.04  Aligned_cols=99  Identities=23%  Similarity=0.199  Sum_probs=48.3

Q ss_pred             cccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           47 LAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      .|.++++|++|++++|.++.+ |..+.++++|++|++++|.+..+ |..++.+++|++|++++|.+..++        +|
T Consensus        51 ~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCC
Confidence            344555555555555555532 33445555555555555555433 444555555555555555443322        45


Q ss_pred             eEEEeeceeccccCCCCC-CCccccceeec
Q 047314          117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      +.|++++|.+.+..+|.. +++++|++|++
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~L  160 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDL  160 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEEC
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEc
Confidence            555555555542233444 45555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.38  E-value=1.4e-12  Score=107.12  Aligned_cols=108  Identities=19%  Similarity=0.202  Sum_probs=91.1

Q ss_pred             cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEeeceec
Q 047314           53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCFNEFRE  126 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l~~n~~  126 (173)
                      .|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|++++|.+..+|      +|+.|++++|.+
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l  520 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL  520 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCC
Confidence            48899999999998876 89999999999999999999999999999999999999887776      899999999999


Q ss_pred             cccCC--CCC-CCccccceeec-----cccccc----cCCCCCcCEEEE
Q 047314          127 MVVNP--PVE-ASLPNLQKLIG-----TEMVCS----SGRFSHLQFLKL  163 (173)
Q Consensus       127 ~~~~l--p~~-~~l~~L~~L~l-----~~~~~~----l~~l~~L~~L~l  163 (173)
                      .  .+  |.. +.+++|+.|++     ...|..    +..+++|+.|++
T Consensus       521 ~--~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          521 Q--QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             C--SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             C--CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            8  45  777 89999999998     333333    234788888863

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.38  E-value=1.6e-12  Score=105.62  Aligned_cols=117  Identities=24%  Similarity=0.243  Sum_probs=70.7

Q ss_pred             cccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCC--C-------c
Q 047314           47 LAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPI--P-------L  115 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~l--p-------~  115 (173)
                      .+..+++|++|++++|.++. .|..+..+++|++|++++|.+..+|+. ++.+++|++|++++|.+..+  |       +
T Consensus        45 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~  124 (549)
T 2z81_A           45 DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTN  124 (549)
T ss_dssp             TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTT
T ss_pred             hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCC
Confidence            46667777777777777763 334566777777777777776655543 66777777777777755432  1       6


Q ss_pred             ceEEEeeceeccccCCCC-C-CCccccceeec------cccccccCCCCCcCEEEEe
Q 047314          116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLS  164 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~  164 (173)
                      |+.|++++|.+.+ .+|. . +.+++|++|++      +..|..++.+++|+.|+++
T Consensus       125 L~~L~L~~n~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          125 LQTLRIGNVETFS-EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             CCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             ccEEECCCCcccc-ccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            6777777666332 4442 3 66666776666      2244445554444444443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.37  E-value=2e-12  Score=103.46  Aligned_cols=99  Identities=24%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             ccccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCC--------Cc
Q 047314           46 FLAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPI--------PL  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~l--------p~  115 (173)
                      ..|..+++|++|++++|.++. .|..+.++++|+.|++++|.++.+|. .+..+++|+.|++++|.+..+        ++
T Consensus        50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~  129 (477)
T 2id5_A           50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN  129 (477)
T ss_dssp             TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence            356666777777777776663 35556666777777777666665554 346666666776666644332        25


Q ss_pred             ceEEEeeceeccccCCCCC-CCccccceeec
Q 047314          116 LKHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      |+.|++++|.+.. ..+.. +.+++|+.|++
T Consensus       130 L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A          130 LKSLEVGDNDLVY-ISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             CCEEEECCTTCCE-ECTTSSTTCTTCCEEEE
T ss_pred             CCEEECCCCccce-eChhhccCCCCCCEEEC
Confidence            6666666665552 22333 55556666555

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.37  E-value=2.7e-12  Score=106.12  Aligned_cols=96  Identities=23%  Similarity=0.216  Sum_probs=59.6

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+++|+.|++++|.++.+++ +..+++|+.|++++|.+..+| .+..+++|+.|++++|.+..++      +|+.|
T Consensus        59 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L  136 (605)
T 1m9s_A           59 QGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL  136 (605)
T ss_dssp             TTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEE
T ss_pred             hHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCccccCCCccCEE
Confidence            446667777777777777775554 666777777777777666554 4666666666666666555543      56666


Q ss_pred             EeeceeccccCCCCCCCccccceeec
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG  145 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l  145 (173)
                      ++++|.+.  .++..+.+++|+.|++
T Consensus       137 ~Ls~N~l~--~l~~l~~l~~L~~L~L  160 (605)
T 1m9s_A          137 YLGNNKIT--DITVLSRLTKLDTLSL  160 (605)
T ss_dssp             ECCSSCCC--CCGGGGSCTTCSEEEC
T ss_pred             ECCCCccC--CchhhcccCCCCEEEC
Confidence            66666655  3321155555555555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.37  E-value=1.9e-12  Score=96.68  Aligned_cols=115  Identities=20%  Similarity=0.190  Sum_probs=86.7

Q ss_pred             CcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      ++++.|++++|.++.++. .+.++++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++        +|+.|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            358888888888885544 6778888888888888888665 46788888888888888654433        7888888


Q ss_pred             eceeccccCCCC-C-CCccccceeec-----cc--cccccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPPV-E-ASLPNLQKLIG-----TE--MVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~--~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.  .++. . +.+++|++|++     ..  +|..++.+++|+.|+++++..
T Consensus       108 ~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          108 VETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             TTSCCC--CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCCCcc--ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            888887  5544 4 77888888888     22  567788888888888887653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.36  E-value=2.7e-12  Score=98.22  Aligned_cols=114  Identities=18%  Similarity=0.211  Sum_probs=80.7

Q ss_pred             CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314           52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF  124 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n  124 (173)
                      +.+++|++++|.++.++. .+.++++|++|++++|.++.+ |..++.+++|++|++++|.+..+|     +|+.|++++|
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n  131 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  131 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence            567788888888775544 577788888888888877755 667778888888888888777666     6778888877


Q ss_pred             eccccCCCC-C-CCccccceeec--------cccccccCCCCCcCEEEEecee
Q 047314          125 REMVVNPPV-E-ASLPNLQKLIG--------TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       125 ~~~~~~lp~-~-~~l~~L~~L~l--------~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                      .+.  .++. . +.+++|+.|++        +..+..+..+++|+.|+++++.
T Consensus       132 ~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~  182 (330)
T 1xku_A          132 EIT--KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN  182 (330)
T ss_dssp             CCC--BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred             ccc--ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence            777  4443 3 66777777777        1234456667777777766544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.36  E-value=3.4e-12  Score=98.56  Aligned_cols=115  Identities=18%  Similarity=0.195  Sum_probs=99.1

Q ss_pred             CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      ++++.|++++|.++.+|. .+.++++|+.|++++|.++.+ |..++.+++|++|++++|.+..+|        +|+.|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  131 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL  131 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence            589999999999996665 689999999999999999966 567899999999999999887776        8999999


Q ss_pred             eceeccccCCCC--C-CCccccceeec------ccc-ccccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPPV--E-ASLPNLQKLIG------TEM-VCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp~--~-~~l~~L~~L~l------~~~-~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.  .+|.  . +.+++|++|++      ..+ +..+..+++|++|+++++..
T Consensus       132 ~~n~l~--~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l  186 (353)
T 2z80_A          132 LGNPYK--TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL  186 (353)
T ss_dssp             TTCCCS--SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCCCc--ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence            999999  7776  4 88999999998      222 45688999999999987653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.35  E-value=9.6e-12  Score=89.20  Aligned_cols=98  Identities=26%  Similarity=0.326  Sum_probs=82.5

Q ss_pred             ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.++.+|.. +..+++|+.|++++|.+..++        +
T Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  125 (208)
T 2o6s_A           46 GVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ  125 (208)
T ss_dssp             TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCc
Confidence            4578899999999999999976665 67899999999999999977654 688999999999999776654        8


Q ss_pred             ceEEEeeceeccccCCCCC--CCccccceeec
Q 047314          116 LKHVCFNEFREMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      |+.|++++|.+.  .++..  +.+++|+.|++
T Consensus       126 L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A          126 LKDLRLYQNQLK--SVPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             CCEEECCSSCCS--CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCccc--eeCHHHhccCCCccEEEe
Confidence            999999999998  56543  78889999887

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.35  E-value=5.1e-12  Score=103.82  Aligned_cols=115  Identities=20%  Similarity=0.248  Sum_probs=100.3

Q ss_pred             CcccEEEecCcccccch-hhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCC-C-------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPI-P-------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~l-p-------~L~~L~l  121 (173)
                      +++++|++++|.++.++ ..+.++++|+.|++++|.+..+ |..++.+++|++|++++|.+..+ |       +|+.|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            78999999999999554 4789999999999999999966 66789999999999999987666 3       8999999


Q ss_pred             eceeccccCCC-CC-CCccccceeec-----c--ccccccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPP-VE-ASLPNLQKLIG-----T--EMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp-~~-~~l~~L~~L~l-----~--~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.  .++ .. +.+++|++|++     .  .+|..++++++|++|+++++..
T Consensus       112 ~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l  165 (606)
T 3vq2_A          112 VETKLA--SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI  165 (606)
T ss_dssp             TTSCCC--CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCC
T ss_pred             cCCccc--cccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcc
Confidence            999998  565 45 99999999999     2  4688899999999999998754

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.35  E-value=6.3e-12  Score=91.24  Aligned_cols=98  Identities=19%  Similarity=0.183  Sum_probs=86.6

Q ss_pred             ccccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      ..|..+++|+.|++++|.++. .|..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..++        +
T Consensus        50 ~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  129 (220)
T 2v9t_B           50 GAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHN  129 (220)
T ss_dssp             TSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCC
Confidence            368899999999999999994 577899999999999999999988765 588999999999999877664        8


Q ss_pred             ceEEEeeceeccccCCCC-C-CCccccceeec
Q 047314          116 LKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG  145 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l  145 (173)
                      |+.|++++|.+.  .++. . ..+++|+.|++
T Consensus       130 L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B          130 LNLLSLYDNKLQ--TIAKGTFSPLRAIQTMHL  159 (220)
T ss_dssp             CCEEECCSSCCS--CCCTTTTTTCTTCCEEEC
T ss_pred             CCEEECCCCcCC--EECHHHHhCCCCCCEEEe
Confidence            999999999999  5654 4 88999999998

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.34  E-value=6.2e-12  Score=100.67  Aligned_cols=116  Identities=24%  Similarity=0.295  Sum_probs=98.8

Q ss_pred             CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      ++++.|++++|.++.+ +..+.++++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+|        +|+.|++
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  111 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI  111 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence            5899999999999954 56799999999999999999955 778999999999999999777665        8999999


Q ss_pred             eceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.. ..+.. +.+++|+.|++      ...+..+..+++|+.|+++++..
T Consensus       112 s~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  164 (477)
T 2id5_A          112 SENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL  164 (477)
T ss_dssp             TTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred             CCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence            9999984 34555 89999999998      23355688999999999988754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.34  E-value=7e-12  Score=91.52  Aligned_cols=112  Identities=23%  Similarity=0.298  Sum_probs=96.8

Q ss_pred             ccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314           54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF  124 (173)
Q Consensus        54 L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n  124 (173)
                      -+.++.+++.++.+|..+.  ++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+|        +|+.|++++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            5678999999998888664  8899999999999966 677899999999999999877765        8999999999


Q ss_pred             eccccCCCCC--CCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314          125 REMVVNPPVE--ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       125 ~~~~~~lp~~--~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      .+.  .++..  +.+++|+.|++     ..+|..+..+++|+.|++++....
T Consensus        99 ~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~  148 (229)
T 3e6j_A           99 QLT--VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK  148 (229)
T ss_dssp             CCC--CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCC
T ss_pred             cCC--ccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCC
Confidence            999  66654  88999999999     677888999999999999987543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.34  E-value=1.7e-12  Score=111.15  Aligned_cols=120  Identities=18%  Similarity=0.161  Sum_probs=100.9

Q ss_pred             ccccCCCcccEEEecCccccc------------------chhhhC--CCCCCcEEeccCCccc-ccCccccCCCCccEEE
Q 047314           46 FLAKECRLLQVLDLEGVYMAL------------------LDSSVG--NLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLD  104 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~------------------~~~~~~--~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~  104 (173)
                      +.++++++|++|++++|.++.                  +|..++  ++++|+.|++++|.+. .+|..++.+++|+.|+
T Consensus       442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~  521 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN  521 (876)
T ss_dssp             GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred             HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence            458889999999999999986                  888887  9999999999998866 8898999999999999


Q ss_pred             ecCCC-CCC--CC--------------cceEEEeeceeccccCCCC--C-CCccccceeec-----cccccccCCCCCcC
Q 047314          105 LSSTL-VDP--IP--------------LLKHVCFNEFREMVVNPPV--E-ASLPNLQKLIG-----TEMVCSSGRFSHLQ  159 (173)
Q Consensus       105 l~~~~-~~~--lp--------------~L~~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l-----~~~~~~l~~l~~L~  159 (173)
                      +++|. +..  +|              +|+.|++++|.+.  .+|.  . +.+++|+.|++     ..+| .++.+++|+
T Consensus       522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~  598 (876)
T 4ecn_A          522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT  598 (876)
T ss_dssp             CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred             CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence            99997 653  33              6899999999998  8888  6 88899999988     4566 777888888


Q ss_pred             EEEEeceee
Q 047314          160 FLKLSNIRV  168 (173)
Q Consensus       160 ~L~l~~~~~  168 (173)
                      .|+++++..
T Consensus       599 ~L~Ls~N~l  607 (876)
T 4ecn_A          599 DLKLDYNQI  607 (876)
T ss_dssp             EEECCSSCC
T ss_pred             EEECcCCcc
Confidence            888877653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.34  E-value=4.3e-12  Score=99.17  Aligned_cols=118  Identities=15%  Similarity=0.133  Sum_probs=72.4

Q ss_pred             ccCCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cce
Q 047314           48 AKECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLK  117 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~  117 (173)
                      +..+++|++|++++|.++.++ ..+..+++|+.|++++|.+..+| ..++.+++|+.|++++|.+..+|        +|+
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            566677777777777776433 35667777777777777776553 44667777777777777655544        667


Q ss_pred             EEEeeceeccccCCCCC-CCccccceeec--ccc-ccccCCCCCcCEEEEece
Q 047314          118 HVCFNEFREMVVNPPVE-ASLPNLQKLIG--TEM-VCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~-~~l~~L~~L~l--~~~-~~~l~~l~~L~~L~l~~~  166 (173)
                      .|++++|.+.+ ..+.. +.+++|+.|++  ..+ ...+..+++|+.|++++.
T Consensus       145 ~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          145 TLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN  196 (390)
T ss_dssp             EEECCSSCCCB-CCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSS
T ss_pred             EEECCCCccCc-cChhhccCCCCCCEEECCCCcCCccccccccccceeecccc
Confidence            77777777762 22333 66677777776  111 112445555555555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.34  E-value=5e-12  Score=102.68  Aligned_cols=117  Identities=19%  Similarity=0.198  Sum_probs=100.0

Q ss_pred             CcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      +++++|++++|.++. .|..+.++++|++|++++|.+..++ ..++.+++|++|++++|.+..++        +|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            689999999999994 4677999999999999999999664 67899999999999999887766        8999999


Q ss_pred             eceeccccCCCCC-CCccccceeec------cccc-cccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPPVE-ASLPNLQKLIG------TEMV-CSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~-~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.+...|.. +.+++|++|++      +.+| ..+.++++|++|+++++..
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l  160 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL  160 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence            9999984334566 89999999998      3344 4688999999999987654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.34  E-value=3.6e-12  Score=104.71  Aligned_cols=122  Identities=15%  Similarity=0.045  Sum_probs=93.2

Q ss_pred             ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      ..|+++++|++|++++|.++ ..|..+.++++|+.|++++|.+..+ |..++.+++|++|++++|.+..++        +
T Consensus        51 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~  130 (606)
T 3t6q_A           51 TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT  130 (606)
T ss_dssp             TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT
T ss_pred             hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc
Confidence            46788889999999999888 4567788899999999998888744 677888899999999988766542        7


Q ss_pred             ceEEEeeceeccccCCCCCCCccccceeec------cccccccCCCCCcC--EEEEecee
Q 047314          116 LKHVCFNEFREMVVNPPVEASLPNLQKLIG------TEMVCSSGRFSHLQ--FLKLSNIR  167 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l------~~~~~~l~~l~~L~--~L~l~~~~  167 (173)
                      |+.|++++|.+.+...|....+++|++|++      +..|..++.+++|+  .|+++++.
T Consensus       131 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             CCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             ccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            889999999888422344444888888888      22355577888888  77776654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.34  E-value=5.4e-12  Score=100.23  Aligned_cols=117  Identities=21%  Similarity=0.191  Sum_probs=96.5

Q ss_pred             CCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314           51 CRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVC  120 (173)
Q Consensus        51 l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~  120 (173)
                      .++|+.|++++|.++ ..|..+..+++|+.|++++|.+..+ |..++.+++|+.|++++|.+..++        +|+.|+
T Consensus       274 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  353 (455)
T 3v47_A          274 ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD  353 (455)
T ss_dssp             TSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred             ccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence            368999999999998 5677788999999999999999855 668889999999999999776553        899999


Q ss_pred             eeceeccccCCCCC-CCccccceeec-----ccccc-ccCCCCCcCEEEEeceee
Q 047314          121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~~  168 (173)
                      +++|.+.+ ..|.. +.+++|++|++     ..+|. .+..+++|+.|+++++..
T Consensus       354 Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  407 (455)
T 3v47_A          354 LSYNHIRA-LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW  407 (455)
T ss_dssp             CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCCcccc-cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence            99999984 34666 88999999998     44444 468899999999987653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.33  E-value=2.6e-12  Score=94.05  Aligned_cols=97  Identities=18%  Similarity=0.105  Sum_probs=59.5

Q ss_pred             cccCCCcccEEEecCcc-cccchh-hhCCCCCCcEEeccC-CcccccC-ccccCCCCccEEEecCCCCCCCC------cc
Q 047314           47 LAKECRLLQVLDLEGVY-MALLDS-SVGNLIHLRYLDLRK-TWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP------LL  116 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~-l~~~~~-~~~~l~~L~~l~l~~-~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp------~L  116 (173)
                      .|..+++|++|++++|. ++.+++ .+..+++|+.|++++ |.++.+| ..+..+++|+.|++++|.+..+|      +|
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L  129 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYST  129 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccccccccccc
Confidence            46667777777777775 664444 466677777777766 6666554 34566667777777766555444      44


Q ss_pred             e---EEEeece-eccccCCCC-C-CCccccc-eeec
Q 047314          117 K---HVCFNEF-REMVVNPPV-E-ASLPNLQ-KLIG  145 (173)
Q Consensus       117 ~---~L~l~~n-~~~~~~lp~-~-~~l~~L~-~L~l  145 (173)
                      +   .|++++| .+.  .++. . +.+++|+ .|++
T Consensus       130 ~~L~~L~l~~N~~l~--~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          130 DIFFILEITDNPYMT--SIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             CSEEEEEEESCTTCC--EECTTTTTTTBSSEEEEEC
T ss_pred             ccccEEECCCCcchh--hcCcccccchhcceeEEEc
Confidence            4   6666666 555  3433 2 5566666 6655

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.32  E-value=3.4e-12  Score=104.76  Aligned_cols=100  Identities=24%  Similarity=0.201  Sum_probs=88.0

Q ss_pred             ccccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      ..|.++++|++|++++|.++.+|+ .|.++++|++|++++|+++.+|. .|..+++|++|++++|.+..+|        +
T Consensus        70 ~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~  149 (635)
T 4g8a_A           70 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  149 (635)
T ss_dssp             TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence            579999999999999999996655 58899999999999999998875 5799999999999999776665        8


Q ss_pred             ceEEEeeceeccccCCCCC-CCccccceeec
Q 047314          116 LKHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      |+.|++++|.+.....|.. +.+++|++|++
T Consensus       150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             cCeeccccCccccCCCchhhccchhhhhhcc
Confidence            9999999999985445666 88999999998

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.32  E-value=4.2e-12  Score=103.39  Aligned_cols=99  Identities=25%  Similarity=0.201  Sum_probs=62.5

Q ss_pred             cccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           47 LAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      .|..+++|++|++++|.++.+ |..+.++++|++|++++|.+..+| ..++.+++|++|++++|.+..++        +|
T Consensus        47 ~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccc
Confidence            566667777777777766643 344666677777777776666443 45666677777777766554433        66


Q ss_pred             eEEEeeceeccccCCCCC-CCccccceeec
Q 047314          117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      ++|++++|.+.+..+|.. +++++|++|++
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l  156 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDL  156 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeC
Confidence            677777766663234555 66667777666

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.32  E-value=5.6e-12  Score=101.87  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=87.2

Q ss_pred             ccccCCCcccEEEecCcccc---cchhhhCCCCCCcEEeccCCcccc-cCcc-ccCCCCccEEEecCCCCCC-----C-C
Q 047314           46 FLAKECRLLQVLDLEGVYMA---LLDSSVGNLIHLRYLDLRKTWLKK-LPSS-MGNLFNLQSLDLSSTLVDP-----I-P  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~---~~~~~~~~l~~L~~l~l~~~~~~~-~p~~-l~~l~~L~~L~l~~~~~~~-----l-p  114 (173)
                      ..++.+++|+.|++++|.++   .+|..+..+++|+.|++++|.+.. +|.. +..+++|+.|++++|.+..     + +
T Consensus       342 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  421 (520)
T 2z7x_B          342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP  421 (520)
T ss_dssp             TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCT
T ss_pred             hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcc
Confidence            44566777777777777776   344557777777777777777774 6654 5667777777777776532     2 2


Q ss_pred             cceEEEeeceeccccCCCCC-CCccccceeec-----cccccc-cCCCCCcCEEEEecee
Q 047314          115 LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIR  167 (173)
Q Consensus       115 ~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~  167 (173)
                      +|+.|++++|.+.  .+|.. ..+++|++|++     ..+|.. +..+++|+.|+++++.
T Consensus       422 ~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          422 RIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             TCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence            7888888888887  78877 78888888888     556665 7788888888888754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.32  E-value=3.2e-12  Score=98.21  Aligned_cols=116  Identities=18%  Similarity=0.239  Sum_probs=53.9

Q ss_pred             ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEe
Q 047314           48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCF  121 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l  121 (173)
                      +..+++|+.|++++|.++..+. +..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..++      +|+.|++
T Consensus       217 ~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          217 VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL  294 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence            4444455555555555444333 44455555555555544433 23444555555555555444333      4555555


Q ss_pred             eceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314          122 NEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       122 ~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                      ++|.+.+ ..+.. +.+++|+.|++     ...+. +..+++|+.|+++++.
T Consensus       295 ~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          295 NNNQLGN-EDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CSSCCCG-GGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC-
T ss_pred             cCCcCCC-cChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhc
Confidence            5555442 22222 44555555555     11221 4455555555555543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.32  E-value=9.9e-12  Score=95.49  Aligned_cols=118  Identities=17%  Similarity=0.222  Sum_probs=83.5

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+++|++|++++|.++.++. +..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..++      +|+.+
T Consensus        60 ~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L  137 (347)
T 4fmz_A           60 QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISPLANLTKMYSL  137 (347)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchhhccCCceeEE
Confidence            457778888888888888886666 778888888888888777664 5778888888888888766554      77888


Q ss_pred             EeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          120 CFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++++|...  ..+.. +.+++|++|++     ...+. +..+++|+.|+++++..
T Consensus       138 ~l~~n~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l  189 (347)
T 4fmz_A          138 NLGANHNL--SDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQI  189 (347)
T ss_dssp             ECTTCTTC--CCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCC
T ss_pred             ECCCCCCc--ccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcc
Confidence            88877544  23333 66777777776     22222 56667777777766543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.31  E-value=6.9e-12  Score=97.36  Aligned_cols=116  Identities=22%  Similarity=0.256  Sum_probs=81.9

Q ss_pred             CcccEEEecCcccccchhh-hC-CCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314           52 RLLQVLDLEGVYMALLDSS-VG-NLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVC  120 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~-~~-~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~  120 (173)
                      ..++.|++++|.++.++.. +. .+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++        +|+.|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            3477888888888855554 44 7888888888888888665 45788888888888888665443        788888


Q ss_pred             eeceeccccCCCCC-CCccccceeec-----ccccccc----CCCCCcCEEEEeceee
Q 047314          121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSS----GRFSHLQFLKLSNIRV  168 (173)
Q Consensus       121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l----~~l~~L~~L~l~~~~~  168 (173)
                      +++|.+.. ..+.. +.+++|+.|++     ..+|..+    ..+++|+.|++++...
T Consensus       119 L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l  175 (361)
T 2xot_A          119 LYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL  175 (361)
T ss_dssp             CCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred             CCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence            88888873 22444 77888888887     3445443    5678888888877543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.31  E-value=3.8e-12  Score=88.35  Aligned_cols=97  Identities=28%  Similarity=0.239  Sum_probs=85.7

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccc-cCccccCCCCccEEEecCCCCCCCC---------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKK-LPSSMGNLFNLQSLDLSSTLVDPIP---------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~lp---------~  115 (173)
                      ..+..+++|++|++++|.++.+ ..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+..+|         +
T Consensus        43 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  121 (168)
T 2ell_A           43 GLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLEC  121 (168)
T ss_dssp             SCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSC
T ss_pred             HHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCC
Confidence            4568899999999999999976 778899999999999999996 6777778999999999999887754         8


Q ss_pred             ceEEEeeceeccccCCCC----C-CCccccceeec
Q 047314          116 LKHVCFNEFREMVVNPPV----E-ASLPNLQKLIG  145 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~----~-~~l~~L~~L~l  145 (173)
                      |+.|++++|.+.  .+|.    . ..+++|++|++
T Consensus       122 L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A          122 LKSLDLFNCEVT--NLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             CCEEECCSSGGG--TSTTHHHHHHTTCSSCCEETT
T ss_pred             CCEEEeeCCcCc--chHHHHHHHHHhCccCcEecC
Confidence            999999999999  6776    5 88999999998

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.31  E-value=1.2e-11  Score=96.68  Aligned_cols=117  Identities=16%  Similarity=0.200  Sum_probs=78.7

Q ss_pred             CCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEE
Q 047314           50 ECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHV  119 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L  119 (173)
                      .+.+++++++.++.++.+|.. +..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+..++        +|+.|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            356777777777777766655 456777777777777777554 46677777777777777655443        67777


Q ss_pred             EeeceeccccCCCCC--CCccccceeec-----cc-cccccCCCCCcCEEEEeceee
Q 047314          120 CFNEFREMVVNPPVE--ASLPNLQKLIG-----TE-MVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~-~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++++|.+.  .+|..  +.+++|++|++     .. .+..+..+++|+.|+++++..
T Consensus       123 ~L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  177 (390)
T 3o6n_A          123 VLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL  177 (390)
T ss_dssp             ECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred             ECCCCccC--cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence            77777777  56553  66777777777     22 234466777777777776543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.31  E-value=1.1e-11  Score=99.14  Aligned_cols=116  Identities=17%  Similarity=0.174  Sum_probs=88.9

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+++|++|++++|.++.+++ +.++++|++|++++|.+..++. ++.+++|++|++++|.+..++      +|++|
T Consensus        62 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  139 (466)
T 1o6v_A           62 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  139 (466)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChHHcCCCCCCEE
Confidence            557889999999999999997776 8999999999999999987766 899999999999999776655      89999


Q ss_pred             EeeceeccccCCCCCCCccccceeec----cccccccCCCCCcCEEEEece
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      ++++|.+.  .++..+.+++|+.|++    ... ..+..+++|+.|+++++
T Consensus       140 ~l~~n~l~--~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~L~~L~l~~n  187 (466)
T 1o6v_A          140 ELSSNTIS--DISALSGLTSLQQLSFGNQVTDL-KPLANLTTLERLDISSN  187 (466)
T ss_dssp             EEEEEEEC--CCGGGTTCTTCSEEEEEESCCCC-GGGTTCTTCCEEECCSS
T ss_pred             ECCCCccC--CChhhccCCcccEeecCCcccCc-hhhccCCCCCEEECcCC
Confidence            99999888  4543256666666665    111 12455555555555544

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.31  E-value=3.9e-12  Score=107.18  Aligned_cols=98  Identities=30%  Similarity=0.288  Sum_probs=86.5

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKH  118 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~  118 (173)
                      +.+..+..|+.|++++|.+..+|..+..+++|+.|++++|.++.+|..++.+++|++|++++|.+..+|       +|+.
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            457888999999999999998888888999999999999999999999999999999999999888887       8899


Q ss_pred             EEeeceeccccCCCCC-CCccccceeec
Q 047314          119 VCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      |++++|.+.  .+|.. +.+++|+.|++
T Consensus       298 L~L~~N~l~--~lp~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          298 FYFFDNMVT--TLPWEFGNLCNLQFLGV  323 (727)
T ss_dssp             EECCSSCCC--CCCSSTTSCTTCCCEEC
T ss_pred             EECCCCCCC--ccChhhhcCCCccEEeC
Confidence            999999998  88888 89999999998

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.31  E-value=1.2e-11  Score=89.82  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=85.2

Q ss_pred             cccCCCcccEEEecCcccccchh-hhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cc
Q 047314           47 LAKECRLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      .|..+++|+.|++++|.++.+++ .+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..++        +|
T Consensus        52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  131 (220)
T 2v70_A           52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSV  131 (220)
T ss_dssp             CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTC
T ss_pred             hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccC
Confidence            48899999999999999996554 78999999999999999997765 5889999999999999877653        89


Q ss_pred             eEEEeeceeccccCCCCC-CCccccceeec
Q 047314          117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      +.|++++|.+.+ ..|.. +.+++|+.|++
T Consensus       132 ~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A          132 RLLSLYDNQITT-VAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             SEEECTTSCCCC-BCTTTTTTCTTCCEEEC
T ss_pred             CEEECCCCcCCE-ECHHHhcCCCCCCEEEe
Confidence            999999999994 33556 88999999998

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.31  E-value=9.2e-12  Score=95.24  Aligned_cols=32  Identities=22%  Similarity=0.213  Sum_probs=15.1

Q ss_pred             CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          135 ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       135 ~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      +.+++|+.|++     ..+|..+..+++|+.|+++++
T Consensus       237 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N  273 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN  273 (330)
T ss_dssp             GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSS
T ss_pred             cCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCC
Confidence            44444444444     334444445555555555443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.31  E-value=5e-12  Score=92.57  Aligned_cols=118  Identities=14%  Similarity=0.169  Sum_probs=75.3

Q ss_pred             cccCCCcccEEEecC-cccccchh-hhCCCCCCcEEeccCCcccccCccccCCCCcc---EEEecCC-CCCCCC------
Q 047314           47 LAKECRLLQVLDLEG-VYMALLDS-SVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQ---SLDLSST-LVDPIP------  114 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~-n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~---~L~l~~~-~~~~lp------  114 (173)
                      .|.++++|++|++++ |.++.+++ .+..+++|+.|++++|.++.+|. ++.+++|+   .|++++| .+..+|      
T Consensus        75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~  153 (239)
T 2xwt_C           75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG  153 (239)
T ss_dssp             TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT
T ss_pred             HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccc
Confidence            567777777777777 77775443 46677777777777777776665 66666666   7777777 554433      


Q ss_pred             --cce-EEEeeceeccccCCCCC-CCccccceeec------cccc-cccCCC-CCcCEEEEecee
Q 047314          115 --LLK-HVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMV-CSSGRF-SHLQFLKLSNIR  167 (173)
Q Consensus       115 --~L~-~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~-~~l~~l-~~L~~L~l~~~~  167 (173)
                        +|+ .+++++|.+.  .+|.. ...++|+.|++      ..+| ..+..+ ++|+.|++++..
T Consensus       154 l~~L~~~L~l~~n~l~--~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~  216 (239)
T 2xwt_C          154 LCNETLTLKLYNNGFT--SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS  216 (239)
T ss_dssp             TBSSEEEEECCSCCCC--EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred             hhcceeEEEcCCCCCc--ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence              566 7777777666  55544 22266777666      1222 335566 677777776643

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.31  E-value=2.6e-12  Score=98.02  Aligned_cols=118  Identities=14%  Similarity=0.091  Sum_probs=90.5

Q ss_pred             CCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCccccc-Cccc-cCCCCccEEEecCCCCCCCC------cceEEE
Q 047314           50 ECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKL-PSSM-GNLFNLQSLDLSSTLVDPIP------LLKHVC  120 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~-p~~l-~~l~~L~~L~l~~~~~~~lp------~L~~L~  120 (173)
                      .+++|+.|++++|.++.++ ..+..+++|+.|++++|.+... |..+ ..+++|+.|++++|.+..++      +|+.|+
T Consensus       118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~  197 (317)
T 3o53_A          118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLD  197 (317)
T ss_dssp             CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEE
T ss_pred             ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEE
Confidence            3566777777777777443 3577788889999988888854 4455 46788999999988765543      889999


Q ss_pred             eeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314          121 FNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       121 l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      +++|.+.  .+|.. ..+++|+.|++     ..+|..+..+++|+.|+++++...
T Consensus       198 Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          198 LSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred             CCCCcCC--cchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence            9999888  67766 78889999988     567777888899999998876543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=1e-11  Score=102.27  Aligned_cols=118  Identities=15%  Similarity=0.139  Sum_probs=82.4

Q ss_pred             cccCCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           47 LAKECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      .+..+++|++|++++|.++.+ |..+..+++|+.|++++|.+..+| ..++.+++|++|++++|.+..+|        +|
T Consensus        70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L  149 (597)
T 3oja_B           70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL  149 (597)
T ss_dssp             HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCC
Confidence            466788888888888888844 446788888888888888888664 45688888888888888766655        78


Q ss_pred             eEEEeeceeccccCCCCC-CCccccceeec--ccc-ccccCCCCCcCEEEEec
Q 047314          117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG--TEM-VCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l--~~~-~~~l~~l~~L~~L~l~~  165 (173)
                      +.|++++|.+.+ ..|.. +.+++|+.|++  ..+ ...++.+++|+.|++++
T Consensus       150 ~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~  201 (597)
T 3oja_B          150 TTLSMSNNNLER-IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY  201 (597)
T ss_dssp             CEEECCSSCCCB-CCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCS
T ss_pred             CEEEeeCCcCCC-CChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhccc
Confidence            888888888874 33444 77888888887  111 11234455555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=2.7e-12  Score=103.56  Aligned_cols=118  Identities=14%  Similarity=0.073  Sum_probs=93.5

Q ss_pred             cCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccc-cCcccc-CCCCccEEEecCCCCCCCC------cceEE
Q 047314           49 KECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKK-LPSSMG-NLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~-~p~~l~-~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      ..+++|+.|++++|.++. .|..+..+++|+.|++++|.++. .|..+. .+++|+.|++++|.+..+|      +|+.|
T Consensus       117 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L  196 (487)
T 3oja_A          117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTL  196 (487)
T ss_dssp             CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEE
T ss_pred             cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEE
Confidence            345677888888888874 45567888899999999998884 566664 6889999999999765543      88999


Q ss_pred             EeeceeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          120 CFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++++|.+.  .+|.. +.+++|+.|++     ..+|..+..+++|+.|+++++..
T Consensus       197 ~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l  249 (487)
T 3oja_A          197 DLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF  249 (487)
T ss_dssp             ECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred             ECCCCCCC--CCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence            99999988  56666 88889999998     55787888899999999987654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.30  E-value=1.1e-11  Score=101.83  Aligned_cols=122  Identities=20%  Similarity=0.149  Sum_probs=79.8

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCC---------CCCc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVD---------PIPL  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~---------~lp~  115 (173)
                      ..|..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+ |..+..+++|+.|++++|.+.         .+++
T Consensus       272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  351 (606)
T 3t6q_A          272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN  351 (606)
T ss_dssp             TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred             HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence            347778888888888888888888888888888888888887754 556677777777777777432         2226


Q ss_pred             ceEEEeeceeccccCC-CCC-CCccccceeec------cccccccCCCCCcCEEEEecee
Q 047314          116 LKHVCFNEFREMVVNP-PVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       116 L~~L~l~~n~~~~~~l-p~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                      |+.|++++|.+.+... +.. +.+++|++|++      +..|..+..+++|+.|+++++.
T Consensus       352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            6777777766653110 333 56666666666      1223445555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.30  E-value=7.7e-12  Score=89.13  Aligned_cols=98  Identities=18%  Similarity=0.138  Sum_probs=87.4

Q ss_pred             ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCC-CCCCC------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTL-VDPIP------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~-~~~lp------~L  116 (173)
                      +.+..+++|++|++++|.++ ..|..+..+++|+.|++++|.+. ..|..++.+++|+.|++++|. ++.+|      +|
T Consensus        82 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L  161 (197)
T 4ezg_A           82 NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL  161 (197)
T ss_dssp             GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSC
T ss_pred             hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCC
Confidence            57889999999999999999 57888999999999999999998 567889999999999999997 87776      89


Q ss_pred             eEEEeeceeccccCCCCCCCccccceeec
Q 047314          117 KHVCFNEFREMVVNPPVEASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~~~l~~L~~L~l  145 (173)
                      +.|++++|.+.  .++....+++|+.|++
T Consensus       162 ~~L~l~~n~i~--~~~~l~~l~~L~~L~l  188 (197)
T 4ezg_A          162 KSLNIQFDGVH--DYRGIEDFPKLNQLYA  188 (197)
T ss_dssp             CEEECTTBCCC--CCTTGGGCSSCCEEEE
T ss_pred             CEEECCCCCCc--ChHHhccCCCCCEEEe
Confidence            99999999998  6663388899999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.29  E-value=1.1e-11  Score=102.96  Aligned_cols=94  Identities=13%  Similarity=0.088  Sum_probs=42.5

Q ss_pred             CCCcccEEEecCcccccchhhhC-CCCCCcEEeccCCcccccCccccC-C-------CCccEEEecCCCCCCCC------
Q 047314           50 ECRLLQVLDLEGVYMALLDSSVG-NLIHLRYLDLRKTWLKKLPSSMGN-L-------FNLQSLDLSSTLVDPIP------  114 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~-~l~~L~~l~l~~~~~~~~p~~l~~-l-------~~L~~L~l~~~~~~~lp------  114 (173)
                      .+++|+.|++++|.++.+|..+. .+++|+.|++++|.++.+|..+.. .       ++|+.|++++|.+..+|      
T Consensus       431 ~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~  510 (636)
T 4eco_A          431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRAT  510 (636)
T ss_dssp             CCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTT
T ss_pred             cCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhc
Confidence            34455555555555554444422 345555555555554444433211 1       14455555554433322      


Q ss_pred             ---cceEEEeeceeccccCCCCC-CCccccceeec
Q 047314          115 ---LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       115 ---~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                         +|+.|++++|.+.  .+|.. +.+++|+.|++
T Consensus       511 ~l~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFS--KFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             TCTTCCEEECCSSCCS--SCCCGGGGCSSCCEEEC
T ss_pred             cCCCcCEEECCCCCCC--CcChhhhcCCCCCEEEC
Confidence               3444555555444  34444 44444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.29  E-value=1.2e-11  Score=100.76  Aligned_cols=115  Identities=19%  Similarity=0.182  Sum_probs=98.8

Q ss_pred             CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      ++++.|++++|.++.+ +..+.++++|+.|++++|.+..++ ..++.+++|++|++++|.+..++        +|+.|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            5799999999999954 557899999999999999999764 56899999999999999765443        8999999


Q ss_pred             eceeccccCCCC-C-CCccccceeec-----c--ccccccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPPV-E-ASLPNLQKLIG-----T--EMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp~-~-~~l~~L~~L~l-----~--~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.  .++. . +.+++|++|++     .  .+|..++++++|+.|+++++..
T Consensus       108 ~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l  161 (570)
T 2z63_A          108 VETNLA--SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (570)
T ss_dssp             TTSCCC--CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred             cccccc--cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence            999998  6765 4 89999999999     2  3688899999999999988754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.28  E-value=4.2e-12  Score=107.00  Aligned_cols=105  Identities=20%  Similarity=0.169  Sum_probs=87.7

Q ss_pred             cccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeeceeccccCCCCC
Q 047314           62 VYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNEFREMVVNPPVE  134 (173)
Q Consensus        62 n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~n~~~~~~lp~~  134 (173)
                      |.+...+..+..+..|+.|++++|.+..+|..+..+++|+.|++++|.+..+|       +|+.|++++|.+.  .+|..
T Consensus       211 n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~  288 (727)
T 4b8c_D          211 NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAE  288 (727)
T ss_dssp             -----------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSS
T ss_pred             cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChh
Confidence            33344466688899999999999999999999999999999999999988888       8999999999999  89988


Q ss_pred             -CCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          135 -ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       135 -~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                       +.+++|++|++     +.+|..++.+++|+.|+++++..
T Consensus       289 ~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          289 LGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             GGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             hcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCcc
Confidence             99999999999     67888899999999999998754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.28  E-value=8.2e-12  Score=100.90  Aligned_cols=117  Identities=23%  Similarity=0.156  Sum_probs=96.8

Q ss_pred             CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314           52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF  124 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n  124 (173)
                      +++++|++++|.++.+ |..+.++++|++|++++|.++.+ |..++.+++|++|++++|.+..+|     +|++|++++|
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~N  100 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFN  100 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECCCCCCCSEEECCSS
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCccccCCccEEeccCC
Confidence            7899999999999954 46799999999999999999965 778999999999999999887665     8999999999


Q ss_pred             eccccCCCCC-CCccccceeec--ccc-ccccCCCCCc--CEEEEeceee
Q 047314          125 REMVVNPPVE-ASLPNLQKLIG--TEM-VCSSGRFSHL--QFLKLSNIRV  168 (173)
Q Consensus       125 ~~~~~~lp~~-~~l~~L~~L~l--~~~-~~~l~~l~~L--~~L~l~~~~~  168 (173)
                      .+.+..+|.. +.+++|++|++  ..+ ...+..+++|  +.|+++++..
T Consensus       101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B          101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             CCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTT
T ss_pred             ccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccc
Confidence            9984345667 89999999998  111 2346677777  8999887643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.28  E-value=1.9e-11  Score=87.10  Aligned_cols=109  Identities=17%  Similarity=0.163  Sum_probs=89.0

Q ss_pred             cEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cceEEEeeceec
Q 047314           55 QVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFRE  126 (173)
Q Consensus        55 ~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~  126 (173)
                      ++++.+++.++.+|..+.  .+++.|++++|.++.+|..+..+++|+.|++++|.+..++        +|+.|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            578889998888887654  5799999999999988888899999999999999776655        789999999999


Q ss_pred             cccCCCC-C-CCccccceeec-----ccccc-ccCCCCCcCEEEEecee
Q 047314          127 MVVNPPV-E-ASLPNLQKLIG-----TEMVC-SSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       127 ~~~~lp~-~-~~l~~L~~L~l-----~~~~~-~l~~l~~L~~L~l~~~~  167 (173)
                      .  .++. . +.+++|+.|++     ..+|. .+..+++|+.|++++..
T Consensus        91 ~--~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A           91 R--CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             C--BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             C--EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            8  5554 4 88899999998     44444 47788999999888753

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.28  E-value=1.3e-11  Score=101.74  Aligned_cols=118  Identities=16%  Similarity=0.189  Sum_probs=101.0

Q ss_pred             CCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEE
Q 047314           50 ECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHV  119 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L  119 (173)
                      .+.+++.+++.+|.++.+|+. +..+++|+.|++++|.+..++ ..++.+++|+.|++++|.+..+|        +|+.|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            467899999999999977776 578999999999999999665 58899999999999999776655        89999


Q ss_pred             EeeceeccccCCCCC--CCccccceeec------cccccccCCCCCcCEEEEeceeee
Q 047314          120 CFNEFREMVVNPPVE--ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~--~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      ++++|.+.  .+|..  +.+++|++|++      +..|..++.+++|+.|+++++...
T Consensus       129 ~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          129 VLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             ECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             EeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            99999999  67764  88999999999      334556899999999999987543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.28  E-value=1.7e-11  Score=93.88  Aligned_cols=112  Identities=22%  Similarity=0.234  Sum_probs=82.2

Q ss_pred             CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314           52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF  124 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n  124 (173)
                      +++++|++++|.++.+ |..+.++++|+.|++++|.++.+ |..++.+++|+.|++++|.+..+|     +|+.|++++|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n  133 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN  133 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            5788888888888854 44688888888888888888855 667888888888888888877776     7888888888


Q ss_pred             eccccCCCCC--CCccccceeec-----c---ccccccCCCCCcCEEEEece
Q 047314          125 REMVVNPPVE--ASLPNLQKLIG-----T---EMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       125 ~~~~~~lp~~--~~l~~L~~L~l-----~---~~~~~l~~l~~L~~L~l~~~  166 (173)
                      .+.  .++..  +.+++|+.|++     .   ..+..+..+ +|+.|+++++
T Consensus       134 ~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n  182 (332)
T 2ft3_A          134 RIR--KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA  182 (332)
T ss_dssp             CCC--CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS
T ss_pred             ccC--ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC
Confidence            887  56553  77888888887     1   224445544 5555555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.28  E-value=2.4e-12  Score=87.67  Aligned_cols=97  Identities=24%  Similarity=0.221  Sum_probs=84.5

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccc-cCccccCCCCccEEEecCCCCCCCC---------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKK-LPSSMGNLFNLQSLDLSSTLVDPIP---------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~-~p~~l~~l~~L~~L~l~~~~~~~lp---------~  115 (173)
                      +.+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++. +|..+..+++|+.|++++|.+..++         +
T Consensus        36 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~  114 (149)
T 2je0_A           36 GLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLEN  114 (149)
T ss_dssp             SCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTT
T ss_pred             HHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCC
Confidence            4578899999999999999976 778899999999999999996 7777778999999999999887643         8


Q ss_pred             ceEEEeeceeccccCCCC----C-CCccccceeec
Q 047314          116 LKHVCFNEFREMVVNPPV----E-ASLPNLQKLIG  145 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~----~-~~l~~L~~L~l  145 (173)
                      |+.|++++|.+.  .++.    . +.+++|+.|++
T Consensus       115 L~~L~l~~N~l~--~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A          115 LKSLDLFNCEVT--NLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             CCEEECTTCGGG--GSTTHHHHHHHHCTTCCEETT
T ss_pred             CCEEeCcCCccc--chHHHHHHHHHHCCCcccccC
Confidence            999999999999  5665    4 78899998875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.27  E-value=9.9e-12  Score=103.44  Aligned_cols=120  Identities=23%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             cccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cc
Q 047314           47 LAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      .|+++++|++|++++|.++ ..|..+.++++|++|++++|.++.+|. .++.+++|++|++++|.+..++        +|
T Consensus        44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence            4667777777777777777 345556677777777777777776665 4677777777777777555443        67


Q ss_pred             eEEEeeceeccccCCCCC-CCccccceeec-----ccc-cccc--CCCCCcCEEEEecee
Q 047314          117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEM-VCSS--GRFSHLQFLKLSNIR  167 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~-~~~l--~~l~~L~~L~l~~~~  167 (173)
                      ++|++++|.+.+ ..|.. +.+++|++|++     ... +..+  ..+++|+.|+++++.
T Consensus       124 ~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          124 ITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             CEEECCSSCCSC-CCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             CEEECCCCcccc-cCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            777777777763 33444 66777777776     111 2222  234667777766553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.27  E-value=5.2e-12  Score=101.85  Aligned_cols=115  Identities=16%  Similarity=0.120  Sum_probs=68.8

Q ss_pred             cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEEe
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCF  121 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l  121 (173)
                      .++.+++|++|++++|.++..++ +..+++|+.|++++|.++.+|.    .++|+.|++++|.+..++     +|+.|++
T Consensus        53 ~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L  127 (487)
T 3oja_A           53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNIYL  127 (487)
T ss_dssp             GGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCCCEEECCCSSCEEEEC
T ss_pred             HHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcCCcCCCCCccccCCCCEEEC
Confidence            56667777777777777664333 6666777777777766665442    245555566555554432     6677777


Q ss_pred             eceeccccCCCCC-CCccccceeec------cccccccC-CCCCcCEEEEecee
Q 047314          122 NEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSG-RFSHLQFLKLSNIR  167 (173)
Q Consensus       122 ~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~-~l~~L~~L~l~~~~  167 (173)
                      ++|.+.+ ..|.. +.+++|+.|++      +..|..+. .+++|+.|+++++.
T Consensus       128 ~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          128 ANNKITM-LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             CSSCCCS-GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             CCCCCCC-CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            7777663 22334 66677777776      22344443 56666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.27  E-value=2.8e-11  Score=100.01  Aligned_cols=120  Identities=20%  Similarity=0.196  Sum_probs=100.7

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+ +.+..+++|+.|++++|.+..++      +|+.|
T Consensus        81 ~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L  158 (605)
T 1m9s_A           81 KPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL  158 (605)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEE
T ss_pred             hhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCchhhcccCCCCEE
Confidence            44889999999999999998765 688999999999999998876 45889999999999999876655      89999


Q ss_pred             EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeeec
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVEE  170 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~~  170 (173)
                      ++++|.+.  .++....+++|+.|++     ..+ ..+..+++|+.|+++++....
T Consensus       159 ~Ls~N~l~--~~~~l~~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          159 SLEDNQIS--DIVPLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             ECCSSCCC--CCGGGTTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEECCSEEEEC
T ss_pred             ECcCCcCC--CchhhccCCCCCEEECcCCCCCCC-hHHccCCCCCEEEccCCcCcC
Confidence            99999998  4433577899999999     333 358899999999999876543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.27  E-value=4.6e-14  Score=100.86  Aligned_cols=118  Identities=18%  Similarity=0.176  Sum_probs=97.7

Q ss_pred             cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEE
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVC  120 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~  120 (173)
                      .+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+..+|      +|+.|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~  121 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY  121 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence            6788999999999999999877 888899999999999999988887788899999999999888776      899999


Q ss_pred             eeceeccccCCCC--C-CCccccceeec------ccccc----------ccCCCCCcCEEEEecee
Q 047314          121 FNEFREMVVNPPV--E-ASLPNLQKLIG------TEMVC----------SSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       121 l~~n~~~~~~lp~--~-~~l~~L~~L~l------~~~~~----------~l~~l~~L~~L~l~~~~  167 (173)
                      +++|.+.  .++.  . ..+++|++|++      +..|.          .+..+++|+.|+-..+.
T Consensus       122 l~~N~i~--~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~  185 (198)
T 1ds9_A          122 MSNNKIT--NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVD  185 (198)
T ss_dssp             ESEEECC--CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGT
T ss_pred             CCCCcCC--chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccC
Confidence            9999998  5544  4 78899999998      22222          27789999988744443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.27  E-value=2.2e-11  Score=99.50  Aligned_cols=120  Identities=22%  Similarity=0.190  Sum_probs=82.1

Q ss_pred             ccccCCCcccEEEecCcccccc---hhhhCCCCCCcEEeccCCcccc-cCcc-ccCCCCccEEEecCCCCCC-----C-C
Q 047314           46 FLAKECRLLQVLDLEGVYMALL---DSSVGNLIHLRYLDLRKTWLKK-LPSS-MGNLFNLQSLDLSSTLVDP-----I-P  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~---~~~~~~l~~L~~l~l~~~~~~~-~p~~-l~~l~~L~~L~l~~~~~~~-----l-p  114 (173)
                      ..++.+++|+.|++++|.++.+   |..+..+++|+.|++++|.+.. +|.. +..+++|+.|++++|.+..     + +
T Consensus       371 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~  450 (562)
T 3a79_B          371 QGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPP  450 (562)
T ss_dssp             TTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCT
T ss_pred             hhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcC
Confidence            3456666777777777766633   3446667777777777777664 5543 5666777777777775532     2 2


Q ss_pred             cceEEEeeceeccccCCCCC-CCccccceeec-----cccccc-cCCCCCcCEEEEecee
Q 047314          115 LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIR  167 (173)
Q Consensus       115 ~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~  167 (173)
                      +|+.|++++|.+.  .+|.. ..+++|+.|++     ..+|.. +..+++|+.|++++..
T Consensus       451 ~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  508 (562)
T 3a79_B          451 KVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP  508 (562)
T ss_dssp             TCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred             cCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence            7788888888877  77777 77888888888     556665 7788888888887653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.27  E-value=2.4e-11  Score=104.05  Aligned_cols=114  Identities=19%  Similarity=0.186  Sum_probs=55.3

Q ss_pred             CCCcccEEEecCcccccchhhhCCCC--------CCcEEeccCCcccccCcccc--CCCCccEEEecCCCCCCCC-----
Q 047314           50 ECRLLQVLDLEGVYMALLDSSVGNLI--------HLRYLDLRKTWLKKLPSSMG--NLFNLQSLDLSSTLVDPIP-----  114 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~l~--------~L~~l~l~~~~~~~~p~~l~--~l~~L~~L~l~~~~~~~lp-----  114 (173)
                      .+++|+.|++++|.++.+|..+....        +|+.|++++|.+..+|..+.  .+++|+.|++++|.+..+|     
T Consensus       695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~  774 (876)
T 4ecn_A          695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN  774 (876)
T ss_dssp             TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGG
T ss_pred             cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhc
Confidence            44455555555555554444433221        45555555555555555444  4555555555555444444     


Q ss_pred             --cceEEEeec------eeccccCCCCC-CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          115 --LLKHVCFNE------FREMVVNPPVE-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       115 --~L~~L~l~~------n~~~~~~lp~~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                        +|+.|++++      |.+.+ .+|.. +.+++|+.|++     +.+|..+.  ++|+.|+++++
T Consensus       775 L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N  837 (876)
T 4ecn_A          775 SSQLKAFGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADN  837 (876)
T ss_dssp             CTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSC
T ss_pred             CCCCCEEECCCCCCcccccccc-cChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCC
Confidence              455555543      33333 44444 55555555555     33444332  35555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.26  E-value=1.9e-11  Score=101.70  Aligned_cols=115  Identities=21%  Similarity=0.169  Sum_probs=98.9

Q ss_pred             CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      ++++.|++++|.++.+|+ .+.++++|+.|++++|.+..+ |..++.+++|++|++++|.+..+|        +|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            689999999999996555 589999999999999999855 677899999999999999877666        8999999


Q ss_pred             eceeccccCCC-CC-CCccccceeec------cccccccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPP-VE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp-~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.  .++ .. +.+++|++|++      +..|..++++++|+.|+++++..
T Consensus       105 ~~n~l~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  157 (680)
T 1ziw_A          105 MSNSIQ--KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI  157 (680)
T ss_dssp             CSSCCC--CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred             CCCccC--ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence            999998  665 45 89999999999      33466688999999999988643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.25  E-value=2.2e-11  Score=99.47  Aligned_cols=117  Identities=21%  Similarity=0.142  Sum_probs=96.0

Q ss_pred             CcccEEEecCcccccch-hhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314           52 RLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF  124 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n  124 (173)
                      ++++.|++++|.++.++ ..+.++++|+.|++++|.++.+ |..++.+++|++|++++|.+..+|     +|+.|++++|
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N  131 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN  131 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence            78999999999999655 5799999999999999999966 677899999999999999887776     8999999999


Q ss_pred             eccccCCCCC-CCccccceeec--ccc-ccccCCCCCc--CEEEEeceee
Q 047314          125 REMVVNPPVE-ASLPNLQKLIG--TEM-VCSSGRFSHL--QFLKLSNIRV  168 (173)
Q Consensus       125 ~~~~~~lp~~-~~l~~L~~L~l--~~~-~~~l~~l~~L--~~L~l~~~~~  168 (173)
                      .+.+...|.. +++++|++|++  ..+ ...+..+++|  +.|+++++..
T Consensus       132 ~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          132 DFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             CCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred             CccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence            9984334456 89999999999  111 2235566666  8998887644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.24  E-value=1.2e-11  Score=93.99  Aligned_cols=116  Identities=17%  Similarity=0.051  Sum_probs=63.8

Q ss_pred             CCCcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccc---cC--ccccCCCCccEEEecCCCCCCCC---------
Q 047314           50 ECRLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKK---LP--SSMGNLFNLQSLDLSSTLVDPIP---------  114 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~---~p--~~l~~l~~L~~L~l~~~~~~~lp---------  114 (173)
                      .+++|++|++++|.++.. |..+..+++|++|++++|.+..   ++  ..++.+++|++|++++|.+..++         
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            356666666666666633 3445566666666666665431   21  22245566666666666554322         


Q ss_pred             --cceEEEeeceeccccCCCCC-CCc---cccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          115 --LLKHVCFNEFREMVVNPPVE-ASL---PNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       115 --~L~~L~l~~n~~~~~~lp~~-~~l---~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                        +|++|++++|.+.+ ..|.. +.+   ++|++|++     ..+|..+.  ++|+.|+++++..
T Consensus       223 l~~L~~L~Ls~N~l~~-~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l  284 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRA-TVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRL  284 (310)
T ss_dssp             TCCCSSEECTTSCCCC-CCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCC
T ss_pred             CCCCCEEECCCCCCCc-cchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcC
Confidence              56667777776663 22443 333   56666666     34444442  5666666665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.24  E-value=8.7e-11  Score=82.13  Aligned_cols=93  Identities=24%  Similarity=0.298  Sum_probs=65.0

Q ss_pred             CCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------cceEEE
Q 047314           51 CRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------LLKHVC  120 (173)
Q Consensus        51 l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~L~~L~  120 (173)
                      .++++.|++++|.++.+|.. +..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+|        +|+.|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            35777888888877755543 56777788888887777766543 577777888888777665544        677777


Q ss_pred             eeceeccccCCCCC--CCccccceeec
Q 047314          121 FNEFREMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       121 l~~n~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      +++|.+.  .+|..  ..+++|++|++
T Consensus       107 l~~N~l~--~~~~~~~~~l~~L~~L~l  131 (177)
T 2o6r_A          107 LDTNQLK--SVPDGIFDRLTSLQKIWL  131 (177)
T ss_dssp             CCSSCCS--CCCTTTTTTCTTCCEEEC
T ss_pred             CcCCcce--EeCHHHhcCCcccCEEEe
Confidence            7777777  55543  56677777776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.24  E-value=1.8e-11  Score=100.48  Aligned_cols=97  Identities=19%  Similarity=0.159  Sum_probs=86.1

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC--C-------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI--P-------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l--p-------~L  116 (173)
                      +.++.+++|+.|++++|.++.+|..++.+++|+.|++++|.++.+| .++.+++|+.|++++|.+..+  |       +|
T Consensus       457 p~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L  535 (567)
T 1dce_A          457 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL  535 (567)
T ss_dssp             CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCC
Confidence            4589999999999999999999999999999999999999999988 899999999999999988877  6       89


Q ss_pred             eEEEeeceeccccCCCCC-----CCccccceeec
Q 047314          117 KHVCFNEFREMVVNPPVE-----ASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-----~~l~~L~~L~l  145 (173)
                      +.|++++|.+.  ..|..     ..+++|+.|++
T Consensus       536 ~~L~L~~N~l~--~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          536 VLLNLQGNSLC--QEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CEEECTTSGGG--GSSSCTTHHHHHCTTCSEEEC
T ss_pred             CEEEecCCcCC--CCccHHHHHHHHCcccCccCC
Confidence            99999999999  44433     34788888864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.24  E-value=4.6e-11  Score=91.47  Aligned_cols=121  Identities=18%  Similarity=0.144  Sum_probs=87.0

Q ss_pred             ccccCCCcccEEEecCccccc-chhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMAL-LDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~-~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      ..+..+++|++|++++|.++. .|..+.++++|+.|++++|.+..+|..+.  ++|+.|++++|.+..++        +|
T Consensus        72 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L  149 (332)
T 2ft3_A           72 DDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNM  149 (332)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred             hHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccC
Confidence            468889999999999999984 47778899999999999998888887665  68888888888766655        78


Q ss_pred             eEEEeeceeccccCC-CCC-CCc--------------------cccceeec-----cc-cccccCCCCCcCEEEEeceee
Q 047314          117 KHVCFNEFREMVVNP-PVE-ASL--------------------PNLQKLIG-----TE-MVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       117 ~~L~l~~n~~~~~~l-p~~-~~l--------------------~~L~~L~l-----~~-~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      +.|++++|.+..... +.. +.+                    ++|+.|++     .. .+..+..+++|+.|+++++..
T Consensus       150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l  229 (332)
T 2ft3_A          150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI  229 (332)
T ss_dssp             CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCC
T ss_pred             CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcC
Confidence            888888887752112 222 333                    34555555     12 234577778888888777543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.23  E-value=2.2e-11  Score=103.99  Aligned_cols=100  Identities=22%  Similarity=0.211  Sum_probs=58.5

Q ss_pred             ccccCCCcccEEEecCcccc-cc-hhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCC----------
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LL-DSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDP----------  112 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~-~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~----------  112 (173)
                      ..|+++++|++|++++|... .+ |..+.++++|++|++++|.+..+ |..++.+++|+.|++++|.+..          
T Consensus        42 ~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           42 SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSS
T ss_pred             hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccc
Confidence            34666666666666666433 33 45566666666666666666633 5566666666666666664432          


Q ss_pred             CCcceEEEeeceeccccCCCCC-CCccccceeec
Q 047314          113 IPLLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       113 lp~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      +++|++|++++|.+.+...+.. +++++|++|++
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence            1256666666666663111223 66666666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.23  E-value=9.1e-12  Score=94.78  Aligned_cols=61  Identities=23%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             cCCCcccEEEecCcccccchhhhCCC-----CCCcEEeccCCcccccC-ccccCCCCccEEEecCCC
Q 047314           49 KECRLLQVLDLEGVYMALLDSSVGNL-----IHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTL  109 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~l-----~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~  109 (173)
                      ..+++|++|++++|.++..|..+..+     ++|++|++++|.+..++ ..++.+++|+.|++++|.
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~  184 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNP  184 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCT
T ss_pred             hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCC
Confidence            55666666666666666445444444     55666666665555443 455555555555555554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.23  E-value=1.8e-11  Score=93.08  Aligned_cols=93  Identities=18%  Similarity=0.041  Sum_probs=44.5

Q ss_pred             CcccEEEecCcccccch-hhhCCCCCCcEEeccCCccc-c--cCccc--cCCCCccEEEecCCCCCCC-----------C
Q 047314           52 RLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLK-K--LPSSM--GNLFNLQSLDLSSTLVDPI-----------P  114 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~-~--~p~~l--~~l~~L~~L~l~~~~~~~l-----------p  114 (173)
                      ++|++|++++|.++.++ ..+..+++|+.|++++|.+. .  .|..+  +.+++|+.|++++|.+..+           +
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            55555555555555332 44555555555555555533 1  22222  4455555555555554421           1


Q ss_pred             cceEEEeeceeccccCCC-CC-CCccccceeec
Q 047314          115 LLKHVCFNEFREMVVNPP-VE-ASLPNLQKLIG  145 (173)
Q Consensus       115 ~L~~L~l~~n~~~~~~lp-~~-~~l~~L~~L~l  145 (173)
                      +|+.|++++|.+.+ ..| .. ..+++|++|++
T Consensus       229 ~L~~L~Ls~N~l~~-~~~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          229 QLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             CCSEEECTTSCCCS-SCCCSCCCCCTTCCEEEC
T ss_pred             CCCEEECCCCcCCc-ccchhhhhhcCCCCEEEC
Confidence            45555555555552 122 11 33455555554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.23  E-value=4.3e-12  Score=96.78  Aligned_cols=116  Identities=15%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEEe
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCF  121 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l  121 (173)
                      .+..+++|++|++++|.++..++ +..+++|++|++++|.++.+|.    .++|+.|++++|.+..++     +|+.|++
T Consensus        53 ~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l  127 (317)
T 3o53_A           53 DLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSRGQGKKNIYL  127 (317)
T ss_dssp             HHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEECCCSSCEEEEC
T ss_pred             HhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCccccCCCCEEEC
Confidence            45566666666666666653333 5566666666666666554432    256666666666554433     7888888


Q ss_pred             eceeccccCCCC-C-CCccccceeec-----cc-ccccc-CCCCCcCEEEEeceeee
Q 047314          122 NEFREMVVNPPV-E-ASLPNLQKLIG-----TE-MVCSS-GRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       122 ~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~-~~~~l-~~l~~L~~L~l~~~~~~  169 (173)
                      ++|.+.  .++. . +.+++|++|++     .. .+..+ ..+++|+.|+++++...
T Consensus       128 ~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  182 (317)
T 3o53_A          128 ANNKIT--MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (317)
T ss_dssp             CSSCCC--SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             CCCCCC--CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCc
Confidence            888887  4543 4 77888999988     22 23444 46889999999887643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.23  E-value=6.6e-11  Score=94.72  Aligned_cols=93  Identities=17%  Similarity=0.083  Sum_probs=56.9

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVC  120 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~  120 (173)
                      +.++.+++|++|++++|.++.+|  ++.+++|++|++++|.++.+|  ++.+++|++|++++|.+..+|     +|+.|+
T Consensus        58 ~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~  133 (457)
T 3bz5_A           58 TGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN  133 (457)
T ss_dssp             TTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred             hhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEE
Confidence            34566667777777777666543  566666777777666666554  566666777777766554444     666666


Q ss_pred             eeceeccccCCCCCCCccccceeec
Q 047314          121 FNEFREMVVNPPVEASLPNLQKLIG  145 (173)
Q Consensus       121 l~~n~~~~~~lp~~~~l~~L~~L~l  145 (173)
                      +++|.+.+  ++ .+.+++|++|++
T Consensus       134 l~~N~l~~--l~-l~~l~~L~~L~l  155 (457)
T 3bz5_A          134 CARNTLTE--ID-VSHNTQLTELDC  155 (457)
T ss_dssp             CTTSCCSC--CC-CTTCTTCCEEEC
T ss_pred             CCCCccce--ec-cccCCcCCEEEC
Confidence            66666662  22 144455555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.22  E-value=1.5e-11  Score=97.70  Aligned_cols=120  Identities=18%  Similarity=0.090  Sum_probs=94.2

Q ss_pred             cCCCcccEEEecCcccc-cchhhhCC---------------------------------------CCCCcEEeccCCccc
Q 047314           49 KECRLLQVLDLEGVYMA-LLDSSVGN---------------------------------------LIHLRYLDLRKTWLK   88 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~-~~~~~~~~---------------------------------------l~~L~~l~l~~~~~~   88 (173)
                      ..+++|+.|++++|.++ ..|..+..                                       ..+|+.+++++|.+.
T Consensus       209 ~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  288 (455)
T 3v47_A          209 FKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIF  288 (455)
T ss_dssp             TTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCC
T ss_pred             cccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcccc
Confidence            35578999999999876 44443321                                       257899999999888


Q ss_pred             -ccCccccCCCCccEEEecCCCCCCC--------CcceEEEeeceeccccCCCCC-CCccccceeec------ccccccc
Q 047314           89 -KLPSSMGNLFNLQSLDLSSTLVDPI--------PLLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSS  152 (173)
Q Consensus        89 -~~p~~l~~l~~L~~L~l~~~~~~~l--------p~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l  152 (173)
                       ..|..++.+++|+.|++++|.+..+        ++|+.|++++|.+.+ ..|.. +.+++|+.|++      +..|..+
T Consensus       289 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  367 (455)
T 3v47_A          289 ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS-IDSRMFENLDKLEVLDLSYNHIRALGDQSF  367 (455)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC-cChhHhcCcccCCEEECCCCcccccChhhc
Confidence             4577889999999999999976554        289999999999984 33455 88999999999      3346779


Q ss_pred             CCCCCcCEEEEeceeee
Q 047314          153 GRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       153 ~~l~~L~~L~l~~~~~~  169 (173)
                      ..+++|+.|+++++...
T Consensus       368 ~~l~~L~~L~L~~N~l~  384 (455)
T 3v47_A          368 LGLPNLKELALDTNQLK  384 (455)
T ss_dssp             TTCTTCCEEECCSSCCS
T ss_pred             cccccccEEECCCCccc
Confidence            99999999999987544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.22  E-value=3e-11  Score=85.80  Aligned_cols=109  Identities=20%  Similarity=0.171  Sum_probs=61.7

Q ss_pred             cEEEecCcccccchhhhCCCCCCcEEeccCCcccccCcc--ccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314           55 QVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSS--MGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF  124 (173)
Q Consensus        55 ~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~--l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n  124 (173)
                      ++++++++.++.+|..+..  +++.|++++|.++.++..  ++.+++|+.|++++|.+..++        +|+.|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            4566666666665554433  566666666666655432  566666666666666554432        5666666666


Q ss_pred             eccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEece
Q 047314          125 REMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       125 ~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      .+.+ ..+.. +.+++|++|++      +..|..+..+++|+.|++++.
T Consensus        89 ~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           89 KIKE-ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CCCE-ECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             cCCc-cCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence            6663 22233 55666666666      223445666666666666553

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.22  E-value=3.9e-11  Score=96.08  Aligned_cols=113  Identities=17%  Similarity=0.095  Sum_probs=95.8

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----cceEEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVC  120 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~  120 (173)
                      ..++.+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|  ++.+++|+.|++++|.+..++     +|+.|+
T Consensus        36 ~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~  112 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPLTKLTYLN  112 (457)
T ss_dssp             EEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEE
T ss_pred             cChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceeecCCCCcCCEEE
Confidence            35778999999999999999776 6899999999999999999876  889999999999999776655     899999


Q ss_pred             eeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          121 FNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       121 l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      +++|.+.  .++ .+.+++|++|++     ..+  .++.+++|+.|+++++
T Consensus       113 L~~N~l~--~l~-~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n  158 (457)
T 3bz5_A          113 CDTNKLT--KLD-VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLN  158 (457)
T ss_dssp             CCSSCCS--CCC-CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTC
T ss_pred             CCCCcCC--eec-CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCC
Confidence            9999998  454 378899999998     233  3677888888887766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.21  E-value=9.4e-11  Score=93.75  Aligned_cols=116  Identities=20%  Similarity=0.243  Sum_probs=62.7

Q ss_pred             ccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEe
Q 047314           48 AKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCF  121 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l  121 (173)
                      +..+++|+.|++++|.++..++ +..+++|+.|++++|.+..++. ++.+++|+.|++++|.+..++      +|+.|++
T Consensus       261 ~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l  338 (466)
T 1o6v_A          261 LSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF  338 (466)
T ss_dssp             GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEEC
T ss_pred             hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeEC
Confidence            4444455555555554443333 4455555555555555554433 455555666666665444332      5666666


Q ss_pred             eceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          122 NEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       122 ~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|.+.  .++..+.+++|+.|++     ...+. +..+++|+.|+++++..
T Consensus       339 ~~n~l~--~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          339 YNNKVS--DVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             CSSCCC--CCGGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEE
T ss_pred             CCCccC--CchhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcc
Confidence            666665  3321166677777776     12222 66777777777776643

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.20  E-value=1.6e-11  Score=85.92  Aligned_cols=95  Identities=15%  Similarity=0.128  Sum_probs=82.6

Q ss_pred             ccCCC-cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccc-cCCCCccEEEecCCCCCCCC---------cc
Q 047314           48 AKECR-LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSM-GNLFNLQSLDLSSTLVDPIP---------LL  116 (173)
Q Consensus        48 ~~~l~-~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l-~~l~~L~~L~l~~~~~~~lp---------~L  116 (173)
                      +..+. +|++|++++|.++.+ +.+..+++|+.|++++|.++.+|+.+ ..+++|+.|++++|.++.+|         +|
T Consensus        37 ~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L  115 (176)
T 1a9n_A           37 LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL  115 (176)
T ss_dssp             GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTC
T ss_pred             hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCC
Confidence            44444 999999999999976 67889999999999999999888665 89999999999999887655         79


Q ss_pred             eEEEeeceeccccCCCC----C-CCccccceeec
Q 047314          117 KHVCFNEFREMVVNPPV----E-ASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~----~-~~l~~L~~L~l  145 (173)
                      +.+++++|.+.  .+|.    . +.+++|+.|++
T Consensus       116 ~~L~l~~N~i~--~~~~~~~~~~~~l~~L~~Ld~  147 (176)
T 1a9n_A          116 TYLCILRNPVT--NKKHYRLYVIYKVPQVRVLDF  147 (176)
T ss_dssp             CEEECCSSGGG--GSTTHHHHHHHHCTTCSEETT
T ss_pred             CEEEecCCCCC--CcHhHHHHHHHHCCccceeCC
Confidence            99999999998  6665    3 78899999998

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.18  E-value=5.8e-13  Score=95.06  Aligned_cols=110  Identities=21%  Similarity=0.250  Sum_probs=90.9

Q ss_pred             ccEEEecCc--ccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeece
Q 047314           54 LQVLDLEGV--YMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNEF  124 (173)
Q Consensus        54 L~~L~l~~n--~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~n  124 (173)
                      ++...+.+.  .++.+|..+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+..+|       +|+.|++++|
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC
Confidence            444445443  34456668999999999999999999888 8899999999999999888888       7999999999


Q ss_pred             eccccCCCCC-CCccccceeec-----ccccc--ccCCCCCcCEEEEecee
Q 047314          125 REMVVNPPVE-ASLPNLQKLIG-----TEMVC--SSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       125 ~~~~~~lp~~-~~l~~L~~L~l-----~~~~~--~l~~l~~L~~L~l~~~~  167 (173)
                      .+.  .+| . +.+++|++|++     ..++.  .+..+++|+.|+++++.
T Consensus       104 ~l~--~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          104 QIA--SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ECC--CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             cCC--cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            998  566 5 78899999998     33333  68899999999998864

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.18  E-value=7.1e-11  Score=100.89  Aligned_cols=120  Identities=23%  Similarity=0.217  Sum_probs=96.1

Q ss_pred             ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCCccc-ccCcc--ccCCCCccEEEecCCCCCCCC-------
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLK-KLPSS--MGNLFNLQSLDLSSTLVDPIP-------  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~~~~-~~p~~--l~~l~~L~~L~l~~~~~~~lp-------  114 (173)
                      ..|.++++|++|++++|.++ ..|..+.++++|+.|++++|.+. ..|..  ++.+++|+.|++++|.+..++       
T Consensus        67 ~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~  146 (844)
T 3j0a_A           67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGK  146 (844)
T ss_dssp             TTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGT
T ss_pred             HHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhh
Confidence            46899999999999999999 45888999999999999999988 45554  899999999999999765542       


Q ss_pred             --cceEEEeeceeccccCCCCC-CCc--cccceeec------cccccccCCCCC------cCEEEEece
Q 047314          115 --LLKHVCFNEFREMVVNPPVE-ASL--PNLQKLIG------TEMVCSSGRFSH------LQFLKLSNI  166 (173)
Q Consensus       115 --~L~~L~l~~n~~~~~~lp~~-~~l--~~L~~L~l------~~~~~~l~~l~~------L~~L~l~~~  166 (173)
                        +|+.|++++|.+.+ ..+.. +.+  ++|+.|++      +..|..++.+++      |+.|+++++
T Consensus       147 L~~L~~L~Ls~N~i~~-~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  214 (844)
T 3j0a_A          147 LNSLKSIDFSSNQIFL-VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN  214 (844)
T ss_dssp             CSSCCEEEEESSCCCC-CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred             CCCCCEEECCCCcCCe-eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence              89999999999884 34444 555  78888887      334555555554      889988876

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.17  E-value=2.2e-10  Score=80.10  Aligned_cols=110  Identities=19%  Similarity=0.216  Sum_probs=82.5

Q ss_pred             ccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314           54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF  124 (173)
Q Consensus        54 L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n  124 (173)
                      .+.+++.++.++.+|..+.  ++++.|++++|.++.+|. .++.+++|+.|++++|.+..++        +|+.|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4678888888887776543  578888888888886664 4578888888888888766654        7888888888


Q ss_pred             eccccCCCC-C-CCccccceeec-----cccccc-cCCCCCcCEEEEecee
Q 047314          125 REMVVNPPV-E-ASLPNLQKLIG-----TEMVCS-SGRFSHLQFLKLSNIR  167 (173)
Q Consensus       125 ~~~~~~lp~-~-~~l~~L~~L~l-----~~~~~~-l~~l~~L~~L~l~~~~  167 (173)
                      .+.  .++. . +.+++|++|++     ..+|.. +..+++|+.|++++..
T Consensus        87 ~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A           87 KLQ--SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             CCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             Ccc--ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence            888  5554 3 77888888888     444544 5778888888887754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.17  E-value=2.8e-11  Score=91.94  Aligned_cols=119  Identities=17%  Similarity=0.061  Sum_probs=95.3

Q ss_pred             ccccCCCcccEEEecCccccc---chhh--hCCCCCCcEEeccCCcccccCcc----ccCCCCccEEEecCCCCCCC-C-
Q 047314           46 FLAKECRLLQVLDLEGVYMAL---LDSS--VGNLIHLRYLDLRKTWLKKLPSS----MGNLFNLQSLDLSSTLVDPI-P-  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~---~~~~--~~~l~~L~~l~l~~~~~~~~p~~----l~~l~~L~~L~l~~~~~~~l-p-  114 (173)
                      ..++.+++|++|++++|.+..   ++..  +..+++|++|++++|.++.++..    ++.+++|+.|++++|.+... | 
T Consensus       163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~  242 (310)
T 4glp_A          163 EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP  242 (310)
T ss_dssp             TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS
T ss_pred             HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh
Confidence            567899999999999999762   3333  36889999999999999865542    47789999999999977665 3 


Q ss_pred             ---------cceEEEeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314          115 ---------LLKHVCFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       115 ---------~L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                               +|+.|++++|.+.  .+|.. -.++|+.|++     ..+|. +..+++|+.|++++...
T Consensus       243 ~~~~~~~~~~L~~L~Ls~N~l~--~lp~~-~~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          243 SAPRCMWSSALNSLNLSFAGLE--QVPKG-LPAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCSSCCCCTTCCCEECCSSCCC--SCCSC-CCSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred             hHHhccCcCcCCEEECCCCCCC--chhhh-hcCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence                     7999999999999  78775 2279999999     33443 67899999999987654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.16  E-value=5.2e-11  Score=92.44  Aligned_cols=119  Identities=22%  Similarity=0.214  Sum_probs=94.2

Q ss_pred             cccc-CCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCCC--------C
Q 047314           46 FLAK-ECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDPI--------P  114 (173)
Q Consensus        46 ~~~~-~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~l--------p  114 (173)
                      ..+. .+++|+.|++++|.++.++ ..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+..+        +
T Consensus        57 ~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~  136 (361)
T 2xot_A           57 EWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA  136 (361)
T ss_dssp             TSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             hhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence            4465 8999999999999999655 568999999999999999997764 678999999999999977654        3


Q ss_pred             cceEEEeeceeccccCCCCC-----CCccccceeec-----cccc-cccCCCCC--cCEEEEece
Q 047314          115 LLKHVCFNEFREMVVNPPVE-----ASLPNLQKLIG-----TEMV-CSSGRFSH--LQFLKLSNI  166 (173)
Q Consensus       115 ~L~~L~l~~n~~~~~~lp~~-----~~l~~L~~L~l-----~~~~-~~l~~l~~--L~~L~l~~~  166 (173)
                      +|+.|++++|.+.  .+|..     ..+++|+.|++     ..+| ..+..++.  ++.|++.+.
T Consensus       137 ~L~~L~L~~N~l~--~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N  199 (361)
T 2xot_A          137 QLQKLYLSQNQIS--RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN  199 (361)
T ss_dssp             TCCEEECCSSCCC--SCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSS
T ss_pred             cCCEEECCCCcCC--eeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCC
Confidence            8999999999999  67654     35889999998     3333 23556665  367777764

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.15  E-value=2.6e-10  Score=91.18  Aligned_cols=93  Identities=17%  Similarity=0.259  Sum_probs=54.8

Q ss_pred             cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEee
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFN  122 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~  122 (173)
                      .++.+++|++|++++|.++.+|..+   .+|+.|++++|.++.+| .++.+++|+.|++++|.+..+|    +|+.|+++
T Consensus       148 ~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~  223 (454)
T 1jl5_A          148 ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAG  223 (454)
T ss_dssp             CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECC
T ss_pred             ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECc
Confidence            3455555555555555554443322   34555555555555554 4666677777777777665554    67777777


Q ss_pred             ceeccccCCCCCCCccccceeec
Q 047314          123 EFREMVVNPPVEASLPNLQKLIG  145 (173)
Q Consensus       123 ~n~~~~~~lp~~~~l~~L~~L~l  145 (173)
                      +|.+.  .+|..+.+++|++|++
T Consensus       224 ~n~l~--~lp~~~~l~~L~~L~l  244 (454)
T 1jl5_A          224 NNILE--ELPELQNLPFLTTIYA  244 (454)
T ss_dssp             SSCCS--SCCCCTTCTTCCEEEC
T ss_pred             CCcCC--cccccCCCCCCCEEEC
Confidence            77666  5663366677777776

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.14  E-value=2.1e-10  Score=79.97  Aligned_cols=76  Identities=28%  Similarity=0.310  Sum_probs=42.1

Q ss_pred             CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      +++++|++++|.++.+ |..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+|        +|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            4555666666666533 33455566666666666665555433 355566666666666544443        4555666


Q ss_pred             eceecc
Q 047314          122 NEFREM  127 (173)
Q Consensus       122 ~~n~~~  127 (173)
                      ++|.+.
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.14  E-value=1.1e-11  Score=94.78  Aligned_cols=15  Identities=33%  Similarity=0.230  Sum_probs=6.0

Q ss_pred             cCCCCCcCEEEEece
Q 047314          152 SGRFSHLQFLKLSNI  166 (173)
Q Consensus       152 l~~l~~L~~L~l~~~  166 (173)
                      +..+++|+.|+++++
T Consensus       243 l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          243 FFQLNYLQHLSLSRC  257 (336)
T ss_dssp             GGGCTTCCEEECTTC
T ss_pred             HhCCCCCCEeeCCCC
Confidence            333444444444333

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=2.6e-10  Score=79.82  Aligned_cols=76  Identities=24%  Similarity=0.288  Sum_probs=44.6

Q ss_pred             CcccEEEecCcccccc-hhhhCCCCCCcEEeccCCcccccCcc-ccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           52 RLLQVLDLEGVYMALL-DSSVGNLIHLRYLDLRKTWLKKLPSS-MGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~-~~~~~~l~~L~~l~l~~~~~~~~p~~-l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      ++|+.|++++|.++.+ |..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|.+..+|        +|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            4566666666666643 34455666666666666666655543 355666666666666554443        5566666


Q ss_pred             eceecc
Q 047314          122 NEFREM  127 (173)
Q Consensus       122 ~~n~~~  127 (173)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            666555

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.11  E-value=6.9e-12  Score=95.88  Aligned_cols=122  Identities=18%  Similarity=0.129  Sum_probs=100.3

Q ss_pred             cccCCCcccEEEecCcccc-c-chhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCC-CCCC---------C
Q 047314           47 LAKECRLLQVLDLEGVYMA-L-LDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSST-LVDP---------I  113 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-~-~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~-~~~~---------l  113 (173)
                      .+..+++|+.|++++|.++ . +|..+..+++|+.|++++|.+. ..|..++.+++|+.|++++| .++.         +
T Consensus        88 ~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~  167 (336)
T 2ast_B           88 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  167 (336)
T ss_dssp             SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence            3567899999999999988 4 7888899999999999999888 67788889999999999999 5653         3


Q ss_pred             CcceEEEeece-eccccCCCCC-CCcc-ccceeec-c--------ccccccCCCCCcCEEEEeceee
Q 047314          114 PLLKHVCFNEF-REMVVNPPVE-ASLP-NLQKLIG-T--------EMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       114 p~L~~L~l~~n-~~~~~~lp~~-~~l~-~L~~L~l-~--------~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|+.|++++| .+.+..++.. +.++ +|++|++ +        .++..+..+++|+.|+++++..
T Consensus       168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence            38999999999 8875335666 7888 9999998 1        1244567899999999998863

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.08  E-value=7.2e-10  Score=91.88  Aligned_cols=67  Identities=21%  Similarity=0.151  Sum_probs=47.1

Q ss_pred             CCccEEEecCCCCCCCC----cceEEEeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceee
Q 047314           98 FNLQSLDLSSTLVDPIP----LLKHVCFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus        98 ~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                      ++|+.|++++|.+..+|    +|+.|++++|.+.  .+|.  .+++|+.|++     ..+|..+.++++|+.|+++++..
T Consensus       221 ~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~--~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLPVLPSELKELMVSGNRLT--SLPM--LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS--CCCC--CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             CCCCEEEccCCccCcCCCCCCcCcEEECCCCCCC--cCCc--ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCC
Confidence            45666666666665554    6777777777666  5554  4567777777     56777788889999998887653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.05  E-value=1.1e-09  Score=87.62  Aligned_cols=109  Identities=20%  Similarity=0.254  Sum_probs=65.6

Q ss_pred             CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceecc
Q 047314           52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREM  127 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~  127 (173)
                      ++|+.|++++|.++.+|..   .++|+.|++++|.++.+| .++.+++|++|++++|.+..+|    +|+.|++++|.+.
T Consensus       111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~  186 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE  186 (454)
T ss_dssp             TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCC
Confidence            4455555555554433221   146777777777777666 4677777777777777666655    6777777777666


Q ss_pred             ccCCCCCCCccccceeec-------------------------cccccccCCCCCcCEEEEecee
Q 047314          128 VVNPPVEASLPNLQKLIG-------------------------TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       128 ~~~lp~~~~l~~L~~L~l-------------------------~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                        .+|..+.+++|++|++                         ..+| .++.+++|+.|+++++.
T Consensus       187 --~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          187 --ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL  248 (454)
T ss_dssp             --SCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred             --cCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc
Confidence              4542255555555555                         2334 35666777777776654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.04  E-value=1.2e-09  Score=89.74  Aligned_cols=103  Identities=22%  Similarity=0.227  Sum_probs=64.7

Q ss_pred             CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceecc
Q 047314           52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREM  127 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~  127 (173)
                      ++|++|++++|.++.+|   ..+++|+.|++++|.++.+|. +..  +|+.|++++|.+..+|    +|+.|++++|.+.
T Consensus        80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~  153 (571)
T 3cvr_A           80 PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLT  153 (571)
T ss_dssp             TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccC
Confidence            56777777777777666   345667777777777666665 443  6777777777665555    5677777777666


Q ss_pred             ccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314          128 VVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       128 ~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                        .+|.  .+++|+.|++     ..+|. +.  ++|+.|+++++.
T Consensus       154 --~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~  191 (571)
T 3cvr_A          154 --MLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNL  191 (571)
T ss_dssp             --CCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSC
T ss_pred             --cCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCC
Confidence              4544  4556666666     33444 33  566666666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.03  E-value=9e-10  Score=90.46  Aligned_cols=112  Identities=15%  Similarity=0.045  Sum_probs=60.7

Q ss_pred             cCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccc-----------------cCCCCccEEEecCCCCC
Q 047314           49 KECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSM-----------------GNLFNLQSLDLSSTLVD  111 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l-----------------~~l~~L~~L~l~~~~~~  111 (173)
                      ..+++|++|++++|.++.+|. +.+  +|+.|++++|.++.+|..+                 ..+++|+.|++++|.+.
T Consensus        97 ~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~  173 (571)
T 3cvr_A           97 ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLT  173 (571)
T ss_dssp             CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS
T ss_pred             cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCC
Confidence            345666666666666665555 433  5555555555555444400                 02344455555555444


Q ss_pred             CCC----cceEEEeeceeccccCCCCCCCcccc-------ceeec-----cccccccCCCCCcCEEEEecee
Q 047314          112 PIP----LLKHVCFNEFREMVVNPPVEASLPNL-------QKLIG-----TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       112 ~lp----~L~~L~l~~n~~~~~~lp~~~~l~~L-------~~L~l-----~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                      .+|    +|+.|++++|.+.  .+|..  ..+|       +.|++     ..+|..+..+++|+.|+++++.
T Consensus       174 ~lp~l~~~L~~L~Ls~N~L~--~lp~~--~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~  241 (571)
T 3cvr_A          174 FLPELPESLEALDVSTNLLE--SLPAV--PVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNP  241 (571)
T ss_dssp             CCCCCCTTCCEEECCSSCCS--SCCCC--C--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSS
T ss_pred             CcchhhCCCCEEECcCCCCC--chhhH--HHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCc
Confidence            443    4555555555555  44443  0144       66766     4567767778888888877754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.02  E-value=7.1e-10  Score=85.59  Aligned_cols=121  Identities=19%  Similarity=0.093  Sum_probs=82.3

Q ss_pred             ccccCCCcccEEEecCcccc-cchh-hhCCCCCCcE-EeccCCccccc-CccccCCCCccEEEecCCCCCCCC-------
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDS-SVGNLIHLRY-LDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-------  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~-~~~~l~~L~~-l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-------  114 (173)
                      .+|.++++|++|++++|.+. .+|. .+.+++++.. +.+..|.+..+ |..+..+++|+.|++++|.+..+|       
T Consensus        48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~  127 (350)
T 4ay9_X           48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHS  127 (350)
T ss_dssp             TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCB
T ss_pred             HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhccc
Confidence            46788888888888888875 4544 3667777665 44556777766 456788888888888888665544       


Q ss_pred             ---------------------------cceEEEeeceeccccCCCCC-CCccccceeec------ccccc-ccCCCCCcC
Q 047314          115 ---------------------------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVC-SSGRFSHLQ  159 (173)
Q Consensus       115 ---------------------------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~-~l~~l~~L~  159 (173)
                                                 .++.|++++|.+.  .++.. ....+|+.+++      +.+|. .+..+++|+
T Consensus       128 ~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~  205 (350)
T 4ay9_X          128 LQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPV  205 (350)
T ss_dssp             SSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred             chhhhhhhccccccccccccchhhcchhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccc
Confidence                                       3455666666666  45554 44455666665      44554 367888888


Q ss_pred             EEEEeceee
Q 047314          160 FLKLSNIRV  168 (173)
Q Consensus       160 ~L~l~~~~~  168 (173)
                      .|++++...
T Consensus       206 ~LdLs~N~l  214 (350)
T 4ay9_X          206 ILDISRTRI  214 (350)
T ss_dssp             EEECTTSCC
T ss_pred             hhhcCCCCc
Confidence            888887654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.99  E-value=7.4e-11  Score=92.09  Aligned_cols=40  Identities=20%  Similarity=0.164  Sum_probs=22.6

Q ss_pred             cCCCcccEEEecCccccc-----chhhhCCCCCCcEEeccCCccc
Q 047314           49 KECRLLQVLDLEGVYMAL-----LDSSVGNLIHLRYLDLRKTWLK   88 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~l~l~~~~~~   88 (173)
                      ..+++|++|++++|.++.     +|..+..+++|+.|++++|.++
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  135 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG  135 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence            455666666666665553     4445555556666666655554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.99  E-value=1.6e-09  Score=75.82  Aligned_cols=88  Identities=22%  Similarity=0.305  Sum_probs=76.9

Q ss_pred             ccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314           54 LQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF  124 (173)
Q Consensus        54 L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n  124 (173)
                      -+.+++++|.++.+|..+.  ++|+.|++++|.+..+ |..+..+++|+.|++++|.+..+|        +|+.|++++|
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            3689999999999888775  7899999999999976 567899999999999999877765        8999999999


Q ss_pred             eccccCCCCC--CCccccceeec
Q 047314          125 REMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       125 ~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      .+.  .+|..  +.+++|++|++
T Consensus        92 ~l~--~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           92 HLK--SIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             CCC--CCCTTTTTTCTTCSEEEC
T ss_pred             ccc--eeCHHHhccccCCCEEEe
Confidence            999  67654  88999999998

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.98  E-value=3.6e-09  Score=87.74  Aligned_cols=70  Identities=19%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             CcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceecc
Q 047314           52 RLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREM  127 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~  127 (173)
                      ++|+.|++++|.++.+|.   .+++|+.|++++|.++.+|.   .+++|+.|++++|.+..+|    +|+.|++++|.+.
T Consensus        61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~~l~~L~~L~L~~N~l~  134 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT  134 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCCCCTTCCEEECCSSCCS
T ss_pred             CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCCCCCCcCEEECCCCCCC
Confidence            466666666666665555   35566666666666665554   4455566666665555444    4555555555444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.98  E-value=2e-09  Score=74.99  Aligned_cols=89  Identities=21%  Similarity=0.287  Sum_probs=77.5

Q ss_pred             cccEEEecCcccccchhhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEeec
Q 047314           53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNE  123 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~  123 (173)
                      ..+.+++++|.++.+|..+.  .+++.|++++|.++.+ |..+..+++|+.|++++|.+..+|        +|+.|++++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            35789999999999888764  7899999999999977 567899999999999999887766        799999999


Q ss_pred             eeccccCCCC-C-CCccccceeec
Q 047314          124 FREMVVNPPV-E-ASLPNLQKLIG  145 (173)
Q Consensus       124 n~~~~~~lp~-~-~~l~~L~~L~l  145 (173)
                      |.+.  .++. . +.+++|+.|++
T Consensus        88 N~l~--~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           88 NQLK--SIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             SCCC--CCCTTTTTTCTTCCEEEC
T ss_pred             CccC--EeCHHHhcCCCCCCEEEe
Confidence            9999  6765 4 88999999998

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.88  E-value=1.5e-10  Score=90.35  Aligned_cols=121  Identities=17%  Similarity=0.091  Sum_probs=63.6

Q ss_pred             cccCCCcccEEEecCcccc-cchh----hhCCC---------CCCcEEeccCCccc--ccC---ccccCCCCccEEEecC
Q 047314           47 LAKECRLLQVLDLEGVYMA-LLDS----SVGNL---------IHLRYLDLRKTWLK--KLP---SSMGNLFNLQSLDLSS  107 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-~~~~----~~~~l---------~~L~~l~l~~~~~~--~~p---~~l~~l~~L~~L~l~~  107 (173)
                      .+..+++|++|++++|.++ ..+.    .+..+         ++|+.|++++|.++  .+|   ..+..+++|+.|++++
T Consensus       117 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  196 (386)
T 2ca6_A          117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ  196 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence            4556667777777777665 2222    22223         56666666666654  223   3445566666666666


Q ss_pred             CCCC-------------CCCcceEEEeeceeccc---cCCCCC-CCccccceeec----------ccccccc--CCCCCc
Q 047314          108 TLVD-------------PIPLLKHVCFNEFREMV---VNPPVE-ASLPNLQKLIG----------TEMVCSS--GRFSHL  158 (173)
Q Consensus       108 ~~~~-------------~lp~L~~L~l~~n~~~~---~~lp~~-~~l~~L~~L~l----------~~~~~~l--~~l~~L  158 (173)
                      |.++             .+++|+.|++++|.+..   ..+|.. ..+++|++|++          ..++..+  +.+++|
T Consensus       197 n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L  276 (386)
T 2ca6_A          197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL  276 (386)
T ss_dssp             SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCC
T ss_pred             CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCe
Confidence            6554             12256666666666531   033444 45556666655          0123333  225556


Q ss_pred             CEEEEecee
Q 047314          159 QFLKLSNIR  167 (173)
Q Consensus       159 ~~L~l~~~~  167 (173)
                      +.|+++++.
T Consensus       277 ~~L~L~~n~  285 (386)
T 2ca6_A          277 QTLRLQYNE  285 (386)
T ss_dssp             CEEECCSSC
T ss_pred             EEEECcCCc
Confidence            666665544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.86  E-value=7.8e-09  Score=79.39  Aligned_cols=80  Identities=19%  Similarity=0.182  Sum_probs=69.6

Q ss_pred             ccCCCcccEEEecC-cccccch-hhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC-------cce
Q 047314           48 AKECRLLQVLDLEG-VYMALLD-SSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP-------LLK  117 (173)
Q Consensus        48 ~~~l~~L~~L~l~~-n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp-------~L~  117 (173)
                      +..+++|+.|++++ |.++.+| ..+..+++|+.|++++|.++.+| ..|..+++|+.|++++|.+..+|       .|+
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~  106 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCce
Confidence            78888999999996 9999655 56889999999999999999665 56799999999999999988887       589


Q ss_pred             EEEeeceecc
Q 047314          118 HVCFNEFREM  127 (173)
Q Consensus       118 ~L~l~~n~~~  127 (173)
                      .|++.+|.+.
T Consensus       107 ~l~l~~N~~~  116 (347)
T 2ifg_A          107 ELVLSGNPLH  116 (347)
T ss_dssp             EEECCSSCCC
T ss_pred             EEEeeCCCcc
Confidence            9999998776

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.81  E-value=1.1e-08  Score=78.57  Aligned_cols=86  Identities=16%  Similarity=0.114  Sum_probs=73.9

Q ss_pred             EEEecCc-ccccchhhhCCCCCCcEEeccC-CcccccC-ccccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314           56 VLDLEGV-YMALLDSSVGNLIHLRYLDLRK-TWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF  124 (173)
Q Consensus        56 ~L~l~~n-~l~~~~~~~~~l~~L~~l~l~~-~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n  124 (173)
                      .++.+++ .++.+|. +..+++|+.|++++ |.++.+| ..|+.+++|+.|++++|.+..++        +|+.|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4688888 8999999 99999999999996 9999776 57899999999999999876654        8999999999


Q ss_pred             eccccCCCCC--CCccccceeec
Q 047314          125 REMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       125 ~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      .+.  .+|..  ..++ |+.|++
T Consensus        91 ~l~--~~~~~~~~~~~-L~~l~l  110 (347)
T 2ifg_A           91 ALE--SLSWKTVQGLS-LQELVL  110 (347)
T ss_dssp             CCS--CCCSTTTCSCC-CCEEEC
T ss_pred             ccc--eeCHHHcccCC-ceEEEe
Confidence            999  67765  4444 888888

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.79  E-value=1.1e-09  Score=84.94  Aligned_cols=117  Identities=16%  Similarity=0.136  Sum_probs=65.3

Q ss_pred             CcccEEEecCcccc-cchhh----hCCC-CCCcEEeccCCcccccCc-c----ccC-CCCccEEEecCCCCCC-------
Q 047314           52 RLLQVLDLEGVYMA-LLDSS----VGNL-IHLRYLDLRKTWLKKLPS-S----MGN-LFNLQSLDLSSTLVDP-------  112 (173)
Q Consensus        52 ~~L~~L~l~~n~l~-~~~~~----~~~l-~~L~~l~l~~~~~~~~p~-~----l~~-l~~L~~L~l~~~~~~~-------  112 (173)
                      ++|++|++++|.++ ..+..    +..+ ++|+.|++++|.++..+. .    +.. ..+|+.|++++|.++.       
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            66777777777666 33332    2233 567777777776664432 2    222 2467777777776552       


Q ss_pred             -----CC-cceEEEeeceeccccCCCC----C-CCc-cccceeec-----cc-----cccccCC-CCCcCEEEEeceeee
Q 047314          113 -----IP-LLKHVCFNEFREMVVNPPV----E-ASL-PNLQKLIG-----TE-----MVCSSGR-FSHLQFLKLSNIRVE  169 (173)
Q Consensus       113 -----lp-~L~~L~l~~n~~~~~~lp~----~-~~l-~~L~~L~l-----~~-----~~~~l~~-l~~L~~L~l~~~~~~  169 (173)
                           .+ +|+.|++++|.+.+ ..+.    . ..+ ++|++|++     +.     ++..+.. .++|+.|+++++...
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLAS-KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHHhcCCccccEeeecCCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence                 22 67777777777663 2221    1 223 47777777     11     3444444 347777777776543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.79  E-value=1.9e-08  Score=77.61  Aligned_cols=117  Identities=17%  Similarity=0.077  Sum_probs=68.2

Q ss_pred             ccccCCCcccEEEecCcccccchhh-hCCCC--------------------------CCcEEeccCCcccccCccccCCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLI--------------------------HLRYLDLRKTWLKKLPSSMGNLF   98 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~--------------------------~L~~l~l~~~~~~~~p~~l~~l~   98 (173)
                      ..|..+++|++|++++|.++.+|.. +....                          .++.|++++|+++.+|.......
T Consensus        98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~  177 (350)
T 4ay9_X           98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT  177 (350)
T ss_dssp             TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTE
T ss_pred             hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcccc
Confidence            4677888888888888877644331 22222                          34555555666665555544455


Q ss_pred             CccEEEecC-CCCCCCC--------cceEEEeeceeccccCCCCC--CCccccceeec---cccccccCCCCCcCEEEEe
Q 047314           99 NLQSLDLSS-TLVDPIP--------LLKHVCFNEFREMVVNPPVE--ASLPNLQKLIG---TEMVCSSGRFSHLQFLKLS  164 (173)
Q Consensus        99 ~L~~L~l~~-~~~~~lp--------~L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l---~~~~~~l~~l~~L~~L~l~  164 (173)
                      +|+.+++++ |.++.+|        +|+.|++++|.+.  .+|..  .+++.|+.++.   ..+| .+.++++|+.+++.
T Consensus       178 ~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~--~lp~~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH--SLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT  254 (350)
T ss_dssp             EEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC--CCCSSSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred             chhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC--ccChhhhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence            566666653 3455544        5667777777666  56553  44444444443   4455 36667777777764


Q ss_pred             c
Q 047314          165 N  165 (173)
Q Consensus       165 ~  165 (173)
                      +
T Consensus       255 ~  255 (350)
T 4ay9_X          255 Y  255 (350)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.75  E-value=2.1e-09  Score=83.33  Aligned_cols=123  Identities=14%  Similarity=0.135  Sum_probs=72.4

Q ss_pred             cccCCC-cccEEEecCcccc-cchhhhCCC-----CCCcEEeccCCcccccC-cc----ccCC-CCccEEEecCCCCCCC
Q 047314           47 LAKECR-LLQVLDLEGVYMA-LLDSSVGNL-----IHLRYLDLRKTWLKKLP-SS----MGNL-FNLQSLDLSSTLVDPI  113 (173)
Q Consensus        47 ~~~~l~-~L~~L~l~~n~l~-~~~~~~~~l-----~~L~~l~l~~~~~~~~p-~~----l~~l-~~L~~L~l~~~~~~~l  113 (173)
                      .+..++ +|+.|++++|.++ ..+..+..+     ++|+.|++++|.++..+ ..    +..+ ++|+.|++++|.++..
T Consensus        45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~  124 (362)
T 3goz_A           45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK  124 (362)
T ss_dssp             HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred             HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence            455666 7777777777777 345555543     67777777777776433 22    3334 6777777777765443


Q ss_pred             C-------------cceEEEeeceeccccCC---CCC-CCcc-ccceeec------cccc----cccCCC-CCcCEEEEe
Q 047314          114 P-------------LLKHVCFNEFREMVVNP---PVE-ASLP-NLQKLIG------TEMV----CSSGRF-SHLQFLKLS  164 (173)
Q Consensus       114 p-------------~L~~L~l~~n~~~~~~l---p~~-~~l~-~L~~L~l------~~~~----~~l~~l-~~L~~L~l~  164 (173)
                      +             +|+.|++++|.+.....   +.. ..++ +|++|++      ...+    ..+..+ ++|+.|+++
T Consensus       125 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls  204 (362)
T 3goz_A          125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLS  204 (362)
T ss_dssp             CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECC
Confidence            2             67777777777763111   111 2333 7777777      1111    223444 478888877


Q ss_pred             ceeee
Q 047314          165 NIRVE  169 (173)
Q Consensus       165 ~~~~~  169 (173)
                      ++...
T Consensus       205 ~N~i~  209 (362)
T 3goz_A          205 ANLLG  209 (362)
T ss_dssp             TSCGG
T ss_pred             CCCCC
Confidence            76543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.67  E-value=1.2e-09  Score=86.78  Aligned_cols=117  Identities=17%  Similarity=-0.002  Sum_probs=54.0

Q ss_pred             CCcccEEEecCccccc-----chhhhCCCCCCcEEeccCCccc-ccCcccc-----CCCCccEEEecCCCCCCC------
Q 047314           51 CRLLQVLDLEGVYMAL-----LDSSVGNLIHLRYLDLRKTWLK-KLPSSMG-----NLFNLQSLDLSSTLVDPI------  113 (173)
Q Consensus        51 l~~L~~L~l~~n~l~~-----~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~-----~l~~L~~L~l~~~~~~~l------  113 (173)
                      +++|+.|++++|.++.     ++..+..+++|+.|++++|.+. ..+..+.     ..++|+.|++++|.+...      
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            4445555555554442     3344444455555555555443 1111111     113455555555544322      


Q ss_pred             ------CcceEEEeeceeccccCCC---CC--CCccccceeec-----c-----ccccccCCCCCcCEEEEecee
Q 047314          114 ------PLLKHVCFNEFREMVVNPP---VE--ASLPNLQKLIG-----T-----EMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       114 ------p~L~~L~l~~n~~~~~~lp---~~--~~l~~L~~L~l-----~-----~~~~~l~~l~~L~~L~l~~~~  167 (173)
                            ++|+.|++++|.+.+....   ..  ...++|+.|++     .     .+|..+..+++|+.|+++++.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence                  2556666666655421111   11  11346666666     1     345555566667777766654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.58  E-value=7.1e-09  Score=82.25  Aligned_cols=13  Identities=31%  Similarity=0.181  Sum_probs=6.7

Q ss_pred             CCCcCEEEEecee
Q 047314          155 FSHLQFLKLSNIR  167 (173)
Q Consensus       155 l~~L~~L~l~~~~  167 (173)
                      .++|+.|+++++.
T Consensus       369 ~~~L~~L~L~~n~  381 (461)
T 1z7x_W          369 GSVLRVLWLADCD  381 (461)
T ss_dssp             TCCCCEEECTTSC
T ss_pred             CCceEEEECCCCC
Confidence            4455555555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.48  E-value=9.7e-08  Score=78.00  Aligned_cols=74  Identities=19%  Similarity=0.205  Sum_probs=41.4

Q ss_pred             cCCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCccc-----ccCccccCCCCccEEEecCCCCCCCC----
Q 047314           49 KECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTWLK-----KLPSSMGNLFNLQSLDLSSTLVDPIP----  114 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~lp----  114 (173)
                      ..+++|++|++++|.++ .    ++.....+++|+.|+++.|.++     .++..+..+++|+.|++++|.+..++    
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~  240 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFK  240 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHH
T ss_pred             hhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHh
Confidence            35667777777777654 2    2223344566666666666554     22333445666666666666544333    


Q ss_pred             ---cceEEEee
Q 047314          115 ---LLKHVCFN  122 (173)
Q Consensus       115 ---~L~~L~l~  122 (173)
                         +|+.+.++
T Consensus       241 ~~~~L~~L~l~  251 (592)
T 3ogk_B          241 AAANLEEFCGG  251 (592)
T ss_dssp             HCTTCCEEEEC
T ss_pred             hhhHHHhhccc
Confidence               55555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.45  E-value=4.4e-08  Score=80.03  Aligned_cols=118  Identities=16%  Similarity=0.079  Sum_probs=65.0

Q ss_pred             cccCCCcccEEEecCcccc-----cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEec---------------
Q 047314           47 LAKECRLLQVLDLEGVYMA-----LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLS---------------  106 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~---------------  106 (173)
                      .+..+++|+.|++++|.++     .++..+.++++|+.|+++++.+..+|..+..+++|+.++++               
T Consensus       187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            3445677777777777664     23333456677777777776665555555555555555554               


Q ss_pred             ------------CCCCCCCC-------cceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCE
Q 047314          107 ------------STLVDPIP-------LLKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQF  160 (173)
Q Consensus       107 ------------~~~~~~lp-------~L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~  160 (173)
                                  ++....+|       +|+.|++++|.+.+..++.. +.+++|+.|++      ..++.....+++|++
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~  346 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR  346 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence                        32222222       56666666666543222233 55666666665      122222345566666


Q ss_pred             EEEe
Q 047314          161 LKLS  164 (173)
Q Consensus       161 L~l~  164 (173)
                      |+++
T Consensus       347 L~L~  350 (592)
T 3ogk_B          347 LRIE  350 (592)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            6666

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.33  E-value=1.3e-08  Score=79.35  Aligned_cols=117  Identities=14%  Similarity=0.091  Sum_probs=68.5

Q ss_pred             CcccEEEecCcccc-cchhhh-CCCCCCcEEeccCCccccc-Cccc-----cCCCCccEEEecCCCCCC-----------
Q 047314           52 RLLQVLDLEGVYMA-LLDSSV-GNLIHLRYLDLRKTWLKKL-PSSM-----GNLFNLQSLDLSSTLVDP-----------  112 (173)
Q Consensus        52 ~~L~~L~l~~n~l~-~~~~~~-~~l~~L~~l~l~~~~~~~~-p~~l-----~~l~~L~~L~l~~~~~~~-----------  112 (173)
                      ++|+.|++++|.++ .....+ ..+.+|+.|++++|.++.. ...+     ...++|+.|++++|.++.           
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            57777777777765 222222 2345677777777776522 2222     235667777777776633           


Q ss_pred             -CCcceEEEeeceeccccC---CCCC-CCccccceeec----------cccccccCCCCCcCEEEEeceee
Q 047314          113 -IPLLKHVCFNEFREMVVN---PPVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       113 -lp~L~~L~l~~n~~~~~~---lp~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                       .++|++|++++|.+....   ++.. ...++|+.|++          ..++..+...++|+.|+++++..
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL  251 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence             336777777777766311   1222 44567777777          12333455567778888777654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.28  E-value=5e-08  Score=76.10  Aligned_cols=118  Identities=17%  Similarity=0.118  Sum_probs=65.4

Q ss_pred             CCcccEEEecCcccc-cchhhh----CC-CCCCcEEeccCCccc-ccCccc-cCCCCccEEEecCCCCCC----------
Q 047314           51 CRLLQVLDLEGVYMA-LLDSSV----GN-LIHLRYLDLRKTWLK-KLPSSM-GNLFNLQSLDLSSTLVDP----------  112 (173)
Q Consensus        51 l~~L~~L~l~~n~l~-~~~~~~----~~-l~~L~~l~l~~~~~~-~~p~~l-~~l~~L~~L~l~~~~~~~----------  112 (173)
                      ++.++.|++++|.++ .....+    .. ..+|+.|++++|.++ .....+ ..+.+|+.|++++|.++.          
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            345667777777766 222222    21 256777777777665 222222 334567777777776643          


Q ss_pred             ---CCcceEEEeeceeccccC---CCCC-CCccccceeec----------cccccccCCCCCcCEEEEeceee
Q 047314          113 ---IPLLKHVCFNEFREMVVN---PPVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       113 ---lp~L~~L~l~~n~~~~~~---lp~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                         .+.|+.|++++|.+....   ++.. ...++|++|++          ..++..+...++|+.|+++++..
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence               125777777777665211   2222 34566777776          12244455666777777776654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.26  E-value=2e-06  Score=65.63  Aligned_cols=65  Identities=22%  Similarity=0.172  Sum_probs=36.0

Q ss_pred             CCCccEEEecCCCCCCCC--------cceEEEeeceeccccCCCCC--CCccccc-eeec----ccc-ccccCCCCCcCE
Q 047314           97 LFNLQSLDLSSTLVDPIP--------LLKHVCFNEFREMVVNPPVE--ASLPNLQ-KLIG----TEM-VCSSGRFSHLQF  160 (173)
Q Consensus        97 l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~~~~~lp~~--~~l~~L~-~L~l----~~~-~~~l~~l~~L~~  160 (173)
                      +++|+.+++++|.+..+|        +|+.+.+..| +.  .++..  .++++|+ .+.+    ..+ +.++.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECTTCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcccceEEchhhhhCCccCCE
Confidence            456666666665555444        5666666665 44  44433  5666666 6655    222 234566666666


Q ss_pred             EEEe
Q 047314          161 LKLS  164 (173)
Q Consensus       161 L~l~  164 (173)
                      +++.
T Consensus       302 l~l~  305 (329)
T 3sb4_A          302 VLAT  305 (329)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            6653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.22  E-value=7.2e-08  Score=78.75  Aligned_cols=60  Identities=17%  Similarity=0.176  Sum_probs=30.0

Q ss_pred             CCCcccEEEecCcccc-cchhhhC-CCCCCcEEeccCC-cccc--cCccccCCCCccEEEecCCC
Q 047314           50 ECRLLQVLDLEGVYMA-LLDSSVG-NLIHLRYLDLRKT-WLKK--LPSSMGNLFNLQSLDLSSTL  109 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~-~~~~~~~-~l~~L~~l~l~~~-~~~~--~p~~l~~l~~L~~L~l~~~~  109 (173)
                      .+++|+.|++++|.++ ..+..+. .+++|+.|++++| .++.  ++..+..+++|+.|++++|.
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  167 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD  167 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence            3455666666665555 3333333 3555666666555 3332  23333345556666665553

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.20  E-value=4.2e-06  Score=63.78  Aligned_cols=89  Identities=18%  Similarity=0.089  Sum_probs=51.4

Q ss_pred             CCcccEEEecCcccccchhh-hCCCCCCcEEeccCCcccccC-ccccCCCCcc-EEEecCCCCCCCC--------cceEE
Q 047314           51 CRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQ-SLDLSSTLVDPIP--------LLKHV  119 (173)
Q Consensus        51 l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~-~L~l~~~~~~~lp--------~L~~L  119 (173)
                      +++|+.+++.+|.++.+|.. |.++.+|+.++++.| ++.++ ..|..+.+|+ .+.+.+ .+..++        +|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            66777777777777655554 566777777777666 55554 4566677776 776665 332222        55555


Q ss_pred             EeeceeccccCCCCC--CCcccccee
Q 047314          120 CFNEFREMVVNPPVE--ASLPNLQKL  143 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~--~~l~~L~~L  143 (173)
                      .+..|.+.  .++..  .++++|+.+
T Consensus       303 ~l~~n~i~--~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKIT--TLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCC--EECTTTTCTTCCCCEE
T ss_pred             EeCCCccC--ccchhhhcCCcchhhh
Confidence            55555554  33332  444444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.06  E-value=1.2e-06  Score=71.40  Aligned_cols=75  Identities=24%  Similarity=0.251  Sum_probs=45.1

Q ss_pred             CCCcccEEEecCc-cccc--chhhhCCCCCCcEEeccCCccccc-Cc----cccCCCCccEEEecCCC--CC--------
Q 047314           50 ECRLLQVLDLEGV-YMAL--LDSSVGNLIHLRYLDLRKTWLKKL-PS----SMGNLFNLQSLDLSSTL--VD--------  111 (173)
Q Consensus        50 ~l~~L~~L~l~~n-~l~~--~~~~~~~l~~L~~l~l~~~~~~~~-p~----~l~~l~~L~~L~l~~~~--~~--------  111 (173)
                      .+++|+.|++.+| .++.  ++..+.++++|+.|++++|.++.. +.    ....+++|+.|++++|.  +.        
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~  207 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLV  207 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH
Confidence            5677888888877 4552  333344677788888877765521 22    22355677777777765  11        


Q ss_pred             -CCCcceEEEeece
Q 047314          112 -PIPLLKHVCFNEF  124 (173)
Q Consensus       112 -~lp~L~~L~l~~n  124 (173)
                       ..|+|+.|++++|
T Consensus       208 ~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          208 TRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHCTTCCEEECCTT
T ss_pred             HhCCCCcEEecCCC
Confidence             1136677777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.06  E-value=1.3e-06  Score=67.88  Aligned_cols=120  Identities=20%  Similarity=0.212  Sum_probs=76.0

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccc-ccCccc--cCCCCccEEEecCC------C--C----
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLK-KLPSSM--GNLFNLQSLDLSST------L--V----  110 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l--~~l~~L~~L~l~~~------~--~----  110 (173)
                      +.+..+++|+.|.+.++.-..++. + .+.+|+.|.+..+.+. .....+  ..+++|+.|+++.+      .  +    
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~  243 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR  243 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred             HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence            455677888888888873123333 3 3778888888777665 222333  26788888887531      1  1    


Q ss_pred             -----CCCCcceEEEeeceeccccCCCC---C-CCccccceeec----------cccccccCCCCCcCEEEEeceee
Q 047314          111 -----DPIPLLKHVCFNEFREMVVNPPV---E-ASLPNLQKLIG----------TEMVCSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       111 -----~~lp~L~~L~l~~n~~~~~~lp~---~-~~l~~L~~L~l----------~~~~~~l~~l~~L~~L~l~~~~~  168 (173)
                           ..+|+|+.|.+.+|.+.. ..+.   . ..+++|++|++          ..++..+..+++|+.|+++.+..
T Consensus       244 ~~l~~~~~p~Lr~L~L~~~~i~~-~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          244 PLFSKDRFPNLKWLGIVDAEEQN-VVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             GGSCTTTCTTCCEEEEESCTTHH-HHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             HHHhcCCCCCcCEEeCCCCCCch-HHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence                 134688899888887663 2211   1 45788888888          12333445678899998887754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.95  E-value=1.3e-06  Score=65.06  Aligned_cols=97  Identities=20%  Similarity=0.148  Sum_probs=61.2

Q ss_pred             ccCCCcccE--EEecCcccccchhh----hCCCCCCcEEeccCCccccc---CccccCCCCccEEEecCCCCCCCC----
Q 047314           48 AKECRLLQV--LDLEGVYMALLDSS----VGNLIHLRYLDLRKTWLKKL---PSSMGNLFNLQSLDLSSTLVDPIP----  114 (173)
Q Consensus        48 ~~~l~~L~~--L~l~~n~l~~~~~~----~~~l~~L~~l~l~~~~~~~~---p~~l~~l~~L~~L~l~~~~~~~lp----  114 (173)
                      +...+.|..  +++..|....++..    ..++++|+.|++++|.++.+   |..+..+++|+.|++++|.+..+.    
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~  216 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK  216 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh
Confidence            444444544  55566643322221    23578888889888887744   355567888888888888776543    


Q ss_pred             ----cceEEEeeceeccccCCCC-------C-CCccccceeec
Q 047314          115 ----LLKHVCFNEFREMVVNPPV-------E-ASLPNLQKLIG  145 (173)
Q Consensus       115 ----~L~~L~l~~n~~~~~~lp~-------~-~~l~~L~~L~l  145 (173)
                          +|+.|++.+|.+.+ .+|.       . ..+|+|+.||-
T Consensus       217 l~~l~L~~L~L~~Npl~~-~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          217 IKGLKLEELWLDGNSLCD-TFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             GTTSCCSEEECTTSTTGG-GCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             cccCCcceEEccCCcCcc-ccCcchhHHHHHHHHCcccCeECC
Confidence                67788888888775 4442       1 45555655553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.84  E-value=2.3e-06  Score=60.14  Aligned_cols=82  Identities=11%  Similarity=0.072  Sum_probs=60.1

Q ss_pred             ccccCCCcccEEEecCc-ccc-----cchhhhCCCCCCcEEeccCCcccc-----cCccccCCCCccEEEecCCCCCCCC
Q 047314           46 FLAKECRLLQVLDLEGV-YMA-----LLDSSVGNLIHLRYLDLRKTWLKK-----LPSSMGNLFNLQSLDLSSTLVDPIP  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n-~l~-----~~~~~~~~l~~L~~l~l~~~~~~~-----~p~~l~~l~~L~~L~l~~~~~~~lp  114 (173)
                      ..+...+.|+.|++++| .+.     .+...+...++|+.|++++|.+..     +...+...+.|+.|++++|.++.-.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g  109 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG  109 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence            45667788999999998 776     245556677889999999988762     3445556678899999988776521


Q ss_pred             ------------cceEEEe--eceecc
Q 047314          115 ------------LLKHVCF--NEFREM  127 (173)
Q Consensus       115 ------------~L~~L~l--~~n~~~  127 (173)
                                  +|+.|++  ++|.+.
T Consensus       110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          110 ILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHhCCCceEEEecCCCCCCC
Confidence                        6888888  667665

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.81  E-value=6.6e-05  Score=58.99  Aligned_cols=62  Identities=18%  Similarity=0.154  Sum_probs=43.4

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSST  108 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~  108 (173)
                      .+|.++.+|+.+++..|.++.++.......+|+.+.+..+ +..++ ..|..+++|+.+.+..+
T Consensus       174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~  236 (401)
T 4fdw_A          174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN  236 (401)
T ss_dssp             STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT
T ss_pred             HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC
Confidence            5788888999999988887766665444567777777644 55443 45667777777777653

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.63  E-value=2.3e-05  Score=54.70  Aligned_cols=33  Identities=15%  Similarity=0.128  Sum_probs=18.4

Q ss_pred             cccEEEecCcccc-cchhhhCCCCCCcEEeccCC
Q 047314           53 LLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKT   85 (173)
Q Consensus        53 ~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~   85 (173)
                      +|+.|+++++.++ .-...+..+++|+.|+++++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C   95 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC   95 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence            4566666666655 33344555556666666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.61  E-value=2.1e-05  Score=55.14  Aligned_cols=82  Identities=12%  Similarity=0.088  Sum_probs=65.0

Q ss_pred             ccccCCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCcccc-----cCccccCCCCccEEEe--cCCCCCCC
Q 047314           46 FLAKECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTWLKK-----LPSSMGNLFNLQSLDL--SSTLVDPI  113 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~~~~-----~p~~l~~l~~L~~L~l--~~~~~~~l  113 (173)
                      ..+...++|++|++++|.+. .    +...+...+.|+.|++++|.+..     +...+...+.|+.|++  ++|.++.-
T Consensus        59 ~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~  138 (185)
T 1io0_A           59 EALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNN  138 (185)
T ss_dssp             HHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHH
T ss_pred             HHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHH
Confidence            55667789999999999987 2    34445566889999999999883     4567777889999999  88887652


Q ss_pred             C------------cceEEEeeceecc
Q 047314          114 P------------LLKHVCFNEFREM  127 (173)
Q Consensus       114 p------------~L~~L~l~~n~~~  127 (173)
                      .            +|+.|++++|.+.
T Consensus       139 g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          139 VEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            1            7899999988775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.56  E-value=7.9e-05  Score=55.43  Aligned_cols=62  Identities=23%  Similarity=0.193  Sum_probs=50.1

Q ss_pred             cCCCcccEEEecCcccccc---hhhhCCCCCCcEEeccCCcccccCccccCCC--CccEEEecCCCCC
Q 047314           49 KECRLLQVLDLEGVYMALL---DSSVGNLIHLRYLDLRKTWLKKLPSSMGNLF--NLQSLDLSSTLVD  111 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~~---~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~--~L~~L~l~~~~~~  111 (173)
                      ..+++|+.|++++|.++.+   |..+..+++|+.|++++|.+..+ ..+..+.  +|+.|++++|.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence            4688999999999999854   35567899999999999999865 2344444  8999999999764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.49  E-value=0.00022  Score=55.27  Aligned_cols=119  Identities=18%  Similarity=0.077  Sum_probs=76.8

Q ss_pred             ccCCCcccEEEecCcccc----------cchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCC------
Q 047314           48 AKECRLLQVLDLEGVYMA----------LLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVD------  111 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~----------~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~------  111 (173)
                      ...+++|+.|.+......          .+...+..+++|+.|.++++....++. + .+++|+.|.+..|.+.      
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~  212 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED  212 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH
Confidence            456788999988654321          244455678899999998774234444 3 3789999999888553      


Q ss_pred             ----CCCcceEEEeec--eecccc----CCCC-C--CCccccceeec--cc----cccc---cCCCCCcCEEEEeceee
Q 047314          112 ----PIPLLKHVCFNE--FREMVV----NPPV-E--ASLPNLQKLIG--TE----MVCS---SGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       112 ----~lp~L~~L~l~~--n~~~~~----~lp~-~--~~l~~L~~L~l--~~----~~~~---l~~l~~L~~L~l~~~~~  168 (173)
                          .+|+|+.|+++.  +...+.    .+.. .  +.+|+|++|++  ..    .+..   .+.+++|+.|+++.+..
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L  291 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL  291 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred             HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence                567999998863  221110    1111 1  45789999998  11    1112   24688999999987543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.44  E-value=7.6e-05  Score=52.07  Aligned_cols=71  Identities=10%  Similarity=0.036  Sum_probs=51.9

Q ss_pred             CCCcEEeccCCccc-ccCccccCCCCccEEEecCCC-CCC--------C----CcceEEEeecee-ccccCCCCCCCccc
Q 047314           75 IHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTL-VDP--------I----PLLKHVCFNEFR-EMVVNPPVEASLPN  139 (173)
Q Consensus        75 ~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~-~~~--------l----p~L~~L~l~~n~-~~~~~lp~~~~l~~  139 (173)
                      ..|+.++++++.++ .--..+..+++|+.|++++|. ++.        .    ++|++|++++|. ++...+.....+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            47999999998887 334567889999999999993 543        2    158999999985 55312221256899


Q ss_pred             cceeec
Q 047314          140 LQKLIG  145 (173)
Q Consensus       140 L~~L~l  145 (173)
                      |++|++
T Consensus       141 L~~L~L  146 (176)
T 3e4g_A          141 LKYLFL  146 (176)
T ss_dssp             CCEEEE
T ss_pred             CCEEEC
Confidence            999988

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.38  E-value=0.00078  Score=52.87  Aligned_cols=114  Identities=8%  Similarity=0.028  Sum_probs=65.9

Q ss_pred             ccccCCCcccEEEecCcccccchhh-hCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCC-----CCC----
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVD-----PIP----  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~-----~lp----  114 (173)
                      .+|.++++|+.+.+..+ ++.++.. |.+ .+|+.+.+.. .+..+ +..|..|++|+.+.+.++.+.     .++    
T Consensus       220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF  296 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCL  296 (401)
T ss_dssp             TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTT
T ss_pred             hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHh
Confidence            45667777777777654 3433332 333 5666666643 34544 345677777777777665432     122    


Q ss_pred             ----cceEEEeeceeccccCCCCC--CCccccceeec----ccc-ccccCCCCCcCEEEEece
Q 047314          115 ----LLKHVCFNEFREMVVNPPVE--ASLPNLQKLIG----TEM-VCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       115 ----~L~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l----~~~-~~~l~~l~~L~~L~l~~~  166 (173)
                          +|+.+.+.. .+.  .++..  .++++|+.+.+    ..+ ..++.++ +|+.+.+.+.
T Consensus       297 ~~c~~L~~l~l~~-~i~--~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          297 EGCPKLARFEIPE-SIR--ILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTCTTCCEECCCT-TCC--EECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred             hCCccCCeEEeCC-ceE--EEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCC
Confidence                677777663 344  44443  66677777776    222 3346667 7777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.42  E-value=0.014  Score=45.28  Aligned_cols=115  Identities=15%  Similarity=0.178  Sum_probs=64.8

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCC--CCCC-----CCcce
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSST--LVDP-----IPLLK  117 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~--~~~~-----lp~L~  117 (173)
                      .+|..+..|+.+.+..+..+--...+.++..|+.+.+.. .+..++ ..|..|.+|+.+.+..+  .++.     ..+|+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEGITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCC
T ss_pred             ceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCcccEehHhHhhCCCCCC
Confidence            467777778877776554333334466777788877753 355554 45677788888887654  1211     11677


Q ss_pred             EEEeeceeccccCCCCC--CCccccceeec-c--ccccccCCCCCcCEEEEe
Q 047314          118 HVCFNEFREMVVNPPVE--ASLPNLQKLIG-T--EMVCSSGRFSHLQFLKLS  164 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-~--~~~~~l~~l~~L~~L~l~  164 (173)
                      .+.+..+ +.  .+...  .++++|+.+.+ +  .....+..+..|+.+.+.
T Consensus       338 ~i~ip~s-v~--~I~~~aF~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          338 RIAIPSS-VT--KIPESAFSNCTALNNIEYSGSRSQWNAISTDSGLQNLPVA  386 (394)
T ss_dssp             EEEECTT-CC--BCCGGGGTTCTTCCEEEESSCHHHHHTCBCCCCC------
T ss_pred             EEEECcc-cC--EEhHhHhhCCCCCCEEEECCceeehhhhhccCCCCEEEeC
Confidence            7777543 44  45443  67777777776 1  112235556666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.38  E-value=0.0062  Score=40.02  Aligned_cols=55  Identities=18%  Similarity=0.170  Sum_probs=40.0

Q ss_pred             cEEEecCcccc--cchhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCC
Q 047314           55 QVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVD  111 (173)
Q Consensus        55 ~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~  111 (173)
                      ..++-+++.++  .+|..+.  .+++.|++++|.++.+|. .|..+++|+.|++.+|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777777777  7776532  358888888888887765 4577888888888887543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.75  E-value=0.039  Score=42.73  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=59.7

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC--------Ccce
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI--------PLLK  117 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l--------p~L~  117 (173)
                      ..+..+..++.+.+..+........+.....++.+....+.+.  ...+..+.+|+.+.+..+ +..+        .+|+
T Consensus       247 ~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~  323 (394)
T 4fs7_A          247 SVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLV  323 (394)
T ss_dssp             STTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCC
T ss_pred             ccccccccceeEEcCCCcceeeccccccccccceeccCceeec--cccccccccccccccccc-cceechhhhcCCCCCC
Confidence            4677778888888776643333334555566666555443221  123455566666666543 1111        1566


Q ss_pred             EEEeeceeccccCCCCC--CCccccceeec----ccc-ccccCCCCCcCEEEEec
Q 047314          118 HVCFNEFREMVVNPPVE--ASLPNLQKLIG----TEM-VCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~--~~l~~L~~L~l----~~~-~~~l~~l~~L~~L~l~~  165 (173)
                      .+.+..+ +.  .+...  .++.+|+.+.+    ..+ ..++.++++|+++++..
T Consensus       324 ~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          324 SIDLPYL-VE--EIGKRSFRGCTSLSNINFPLSLRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             EECCCTT-CC--EECTTTTTTCTTCCEECCCTTCCEECTTTBTTCTTCCEEEEEG
T ss_pred             EEEeCCc-cc--EEhHHhccCCCCCCEEEECccccEehHHHhhCCCCCCEEEECC
Confidence            6655432 33  33332  55666666666    222 22466666777666643

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.71  E-value=0.046  Score=41.93  Aligned_cols=14  Identities=14%  Similarity=0.216  Sum_probs=6.2

Q ss_pred             cCCCCccEEEecCC
Q 047314           95 GNLFNLQSLDLSST  108 (173)
Q Consensus        95 ~~l~~L~~L~l~~~  108 (173)
                      ..+.+|+.+.+.++
T Consensus       283 ~~c~~L~~i~l~~~  296 (379)
T 4h09_A          283 SGCSNLTKVVMDNS  296 (379)
T ss_dssp             TTCTTCCEEEECCT
T ss_pred             cccccccccccccc
Confidence            44444444444433

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=95.35  E-value=0.0048  Score=50.27  Aligned_cols=34  Identities=9%  Similarity=0.204  Sum_probs=29.3

Q ss_pred             CcccccCCccc-----cceeEeCHHHHHHHHHhccccce
Q 047314            1 MELIERSMVQP-----IKTIQVHDLLRELAISKAKEDRF   34 (173)
Q Consensus         1 ~~l~~r~l~~~-----~~~~~~h~~~~~~~~~~~~~~~~   34 (173)
                      ++|++|||++.     ..+|+|||+++++|..++.++++
T Consensus       435 ~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          435 KRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             HHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             HHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence            47999999997     35799999999999999887664

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.27  E-value=0.13  Score=39.78  Aligned_cols=93  Identities=19%  Similarity=0.129  Sum_probs=42.2

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      ..|..+..++.+......+..  ..+....+|+.+.+..+ ++.++ ..|..+.+|+.+.+..+ +..++        +|
T Consensus       270 ~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          270 SLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL  345 (394)
T ss_dssp             CTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred             cccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence            345555555555554433221  12344555555555433 33332 34455555655555432 22111        45


Q ss_pred             eEEEeeceeccccCCCCC--CCccccceeec
Q 047314          117 KHVCFNEFREMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      +.+.+..+ +.  .+...  .++++|+.+.+
T Consensus       346 ~~i~lp~~-l~--~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          346 SNINFPLS-LR--KIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             CEECCCTT-CC--EECTTTBTTCTTCCEEEE
T ss_pred             CEEEECcc-cc--EehHHHhhCCCCCCEEEE
Confidence            55555443 32  33322  45555555555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.15  E-value=0.019  Score=37.63  Aligned_cols=36  Identities=22%  Similarity=0.145  Sum_probs=31.9

Q ss_pred             cccEEEecCcccccchhh-hCCCCCCcEEeccCCccc
Q 047314           53 LLQVLDLEGVYMALLDSS-VGNLIHLRYLDLRKTWLK   88 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~l~l~~~~~~   88 (173)
                      +++.|+|++|.|+.+|.. +..+++|+.+++++|.+.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            699999999999987776 677999999999999776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.10  E-value=0.14  Score=39.18  Aligned_cols=115  Identities=11%  Similarity=0.078  Sum_probs=76.3

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCC--------CCcc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDP--------IPLL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~--------lp~L  116 (173)
                      ..+..+..++.+.+..+--..-...+.....|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ +..        ..+|
T Consensus       211 ~~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          211 YGFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred             cccccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence            5667777888888765522233345667788888888765 55443 45677888888888654 222        2278


Q ss_pred             eEEEeeceeccccCCCCC--CCccccceeec----cccc-cccCCCCCcCEEEEe
Q 047314          117 KHVCFNEFREMVVNPPVE--ASLPNLQKLIG----TEMV-CSSGRFSHLQFLKLS  164 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~--~~l~~L~~L~l----~~~~-~~l~~l~~L~~L~l~  164 (173)
                      +.+.+..+.+.  .++..  .++.+|+.+.+    ..+. .++.++++|+.+.+-
T Consensus       289 ~~i~l~~~~i~--~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          289 TKVVMDNSAIE--TLEPRVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CEEEECCTTCC--EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccccccccc--eehhhhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence            88888777666  55543  77888888887    2332 347778888877663

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.99  E-value=0.21  Score=38.54  Aligned_cols=92  Identities=16%  Similarity=0.145  Sum_probs=60.3

Q ss_pred             hCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cceEEEeeceeccccCCCCC--CCcccc
Q 047314           71 VGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFREMVVNPPVE--ASLPNL  140 (173)
Q Consensus        71 ~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~~~~~lp~~--~~l~~L  140 (173)
                      +.....|+.+.+..+....-...+..+.+|+.+.+... +..++        +|+.+.+..+ +.  .+...  .++.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR-ITELPESVFAGCISLKSIDIPEG-IT--QILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTC
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCCc-ccccCceeecCCCCcCEEEeCCc-cc--EehHhHhhCCCCC
Confidence            45567777777765533333455677888888887643 33322        7888888653 33  44433  778889


Q ss_pred             ceeec----ccc-ccccCCCCCcCEEEEece
Q 047314          141 QKLIG----TEM-VCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       141 ~~L~l----~~~-~~~l~~l~~L~~L~l~~~  166 (173)
                      +.+.+    ..+ ..++.++++|+.+++.+.
T Consensus       337 ~~i~ip~sv~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          337 ERIAIPSSVTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             CEEEECTTCCBCCGGGGTTCTTCCEEEESSC
T ss_pred             CEEEECcccCEEhHhHhhCCCCCCEEEECCc
Confidence            98888    233 335888999999988753

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.88  E-value=0.013  Score=41.46  Aligned_cols=78  Identities=15%  Similarity=0.174  Sum_probs=50.8

Q ss_pred             cccCCCcccEEEecCc-ccc-----cchhhhCCCCCCcEEeccCCccc-c----cCccccCCCCccEEEecCCCCCCCC-
Q 047314           47 LAKECRLLQVLDLEGV-YMA-----LLDSSVGNLIHLRYLDLRKTWLK-K----LPSSMGNLFNLQSLDLSSTLVDPIP-  114 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n-~l~-----~~~~~~~~l~~L~~l~l~~~~~~-~----~p~~l~~l~~L~~L~l~~~~~~~lp-  114 (173)
                      ....-+.|+.|+++++ .+.     .+.+.+..-+.|+.|++++|.+. .    +...+..-..|+.|++++|.|+.-. 
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3445567888888875 554     24455556677888888888777 2    2233444567888888888776422 


Q ss_pred             -----------cceEEEeece
Q 047314          115 -----------LLKHVCFNEF  124 (173)
Q Consensus       115 -----------~L~~L~l~~n  124 (173)
                                 .|+.|++++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence                       6777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.46  E-value=0.049  Score=38.46  Aligned_cols=81  Identities=14%  Similarity=0.075  Sum_probs=56.7

Q ss_pred             ccccCCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCccc-----ccCccccCCCCccEEEecCCCCCCCC-
Q 047314           46 FLAKECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTWLK-----KLPSSMGNLFNLQSLDLSSTLVDPIP-  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~lp-  114 (173)
                      ..+..-..|+.|++++|.+. .    +...+..-+.|+.|++++|.++     .+...+..-..|+.|+++++....+. 
T Consensus        64 ~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~  143 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  143 (197)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCH
Confidence            45666789999999999988 3    2333444578999999999988     23345555667999999865332222 


Q ss_pred             --------------cceEEEeeceec
Q 047314          115 --------------LLKHVCFNEFRE  126 (173)
Q Consensus       115 --------------~L~~L~l~~n~~  126 (173)
                                    +|..|++..|.+
T Consensus       144 ~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          144 QVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                          677777776543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=82.99  E-value=0.5  Score=41.60  Aligned_cols=32  Identities=19%  Similarity=0.273  Sum_probs=26.4

Q ss_pred             CcccccCCccc--c---ceeEeCHHHHHHHHHhcccc
Q 047314            1 MELIERSMVQP--I---KTIQVHDLLRELAISKAKED   32 (173)
Q Consensus         1 ~~l~~r~l~~~--~---~~~~~h~~~~~~~~~~~~~~   32 (173)
                      ++|++|||++.  .   ..|+||+++++++...+.++
T Consensus       416 ~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          416 QEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            37899999988  2   35999999999999886554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.002
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 51  CRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSST-L 109
            + L  L L    ++ + S V +L  L+ L      +  + S + NL N+  L      +
Sbjct: 306 LKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQI 363

Query: 110 VDPIPL 115
            D  PL
Sbjct: 364 SDLTPL 369

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 51  CRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS 107
              LQ L      ++ + SS+ NL ++ +L      +  L   + NL  +  L L+ 
Sbjct: 328 LTKLQRLFFANNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 9/46 (19%), Positives = 18/46 (39%)

Query: 69  SSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP 114
           +   N +  R LDLR   +  + +    L    ++D S   +  + 
Sbjct: 12  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD 57

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 24/127 (18%), Positives = 44/127 (34%), Gaps = 7/127 (5%)

Query: 54  LQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVD 111
             +LDL+   +  + D    NL +L  L L    + K+ P +   L  L+ L LS   + 
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 112 PIP-----LLKHVCFNEFREMVVNPPVEASLPNLQKLIGTEMVCSSGRFSHLQFLKLSNI 166
            +P      L+ +  +E     V   V   L  +  +        S    +  F  +  +
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 167 RVEERSG 173
                + 
Sbjct: 153 SYIRIAD 159

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 69  SSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSS 107
             +  L  L+ L L K  +  L + +  L NL  L+L S
Sbjct: 172 VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFS 209

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.42
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.41
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.28
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.23
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.21
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.2
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.14
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.13
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.12
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.08
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.06
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.99
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.91
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.9
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.9
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.86
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.71
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.36
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.33
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.04
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.84
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.81
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.26
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.21
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.69
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.37
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.84

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=6.3e-15  Score=100.88  Aligned_cols=121  Identities=17%  Similarity=0.158  Sum_probs=99.6

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cce
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLK  117 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~  117 (173)
                      +.+.++.+++.|++++|.|+.++..+..+.+|+.|++++|.++.++ .+..+++|++|++++|.+..++        +|+
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            3467778899999999999988776678999999999999999885 5889999999999999887765        899


Q ss_pred             EEEeeceeccccCCCC--C-CCccccceeec-----ccccc----ccCCCCCcCEEEEeceeee
Q 047314          118 HVCFNEFREMVVNPPV--E-ASLPNLQKLIG-----TEMVC----SSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~--~-~~l~~L~~L~l-----~~~~~----~l~~l~~L~~L~l~~~~~~  169 (173)
                      +|++++|.+.  .++.  . ..+++|+++++     ...|.    .+..+|+|+.||-..+...
T Consensus        91 ~L~L~~N~i~--~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~~i~~~  152 (162)
T d1a9na_          91 ELILTNNSLV--ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  152 (162)
T ss_dssp             EEECCSCCCC--CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cceecccccc--ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCCCCCHH
Confidence            9999999998  5553  4 78899999999     22332    4778999999986665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=2.7e-14  Score=93.44  Aligned_cols=88  Identities=24%  Similarity=0.300  Sum_probs=67.7

Q ss_pred             cEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEeeceeccc
Q 047314           55 QVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCFNEFREMV  128 (173)
Q Consensus        55 ~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l~~n~~~~  128 (173)
                      |+|++++|.++.++ .+..+++|++|++++|.++.+|+.++.+++|++|++++|.+..+|      +|+++++++|.+. 
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~-   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ-   78 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC-
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccC-
Confidence            57888888888665 477788888888888888888877888888888888888776665      7888888888887 


Q ss_pred             cCCCC--C-CCccccceeec
Q 047314          129 VNPPV--E-ASLPNLQKLIG  145 (173)
Q Consensus       129 ~~lp~--~-~~l~~L~~L~l  145 (173)
                       .++.  . +.+++|+.+++
T Consensus        79 -~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          79 -QSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             -SSSTTGGGGGCTTCCEEEC
T ss_pred             -CCCCchhhcCCCCCCEEEC
Confidence             4543  3 67778888887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=7.4e-13  Score=96.98  Aligned_cols=118  Identities=25%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC--------cce
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP--------LLK  117 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~  117 (173)
                      ..|.++++|+.|++++|.++.+|. +..+++|+.|++++|++...+..+..+++|+.++++++.+..++        ++.
T Consensus        49 ~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~  127 (266)
T d1p9ag_          49 ATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ  127 (266)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCC
T ss_pred             HHhhcccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccceeeccccccccccc
Confidence            346667777777777776665543 35566677777776666666666666666666666666444433        344


Q ss_pred             EEEeeceeccccCCCCC--CCccccceeec-----cccc-cccCCCCCcCEEEEece
Q 047314          118 HVCFNEFREMVVNPPVE--ASLPNLQKLIG-----TEMV-CSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       118 ~L~l~~n~~~~~~lp~~--~~l~~L~~L~l-----~~~~-~~l~~l~~L~~L~l~~~  166 (173)
                      .+.+.+|.+.  .++..  ..+++|+.+++     ..++ ..+..+++|++|++++.
T Consensus       128 ~L~l~~n~l~--~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         128 ELYLKGNELK--TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             EEECTTSCCC--CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccccccccc--eeccccccccccchhcccccccccccCccccccccccceeecccC
Confidence            4444444444  33322  34444444444     1122 22444455555554443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=1.1e-12  Score=92.90  Aligned_cols=116  Identities=24%  Similarity=0.243  Sum_probs=73.9

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.+..+++|+.|++++|.++.++ .+..+++|+.|++++|+++.+| .+..+++|+.+++++|.+..++      .++.+
T Consensus        62 ~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l  139 (210)
T d1h6ta2          62 QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESL  139 (210)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEE
T ss_pred             hhHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            34677888999999999888765 3678888999999888888776 4777888888888888655443      45555


Q ss_pred             EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      +++.|.+.  ..+....+++|+++++     ..++ .+.++++|++|+++++
T Consensus       140 ~~~~n~l~--~~~~~~~l~~L~~l~l~~n~l~~i~-~l~~l~~L~~L~Ls~N  188 (210)
T d1h6ta2         140 YLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKN  188 (210)
T ss_dssp             ECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSS
T ss_pred             cccccccc--ccccccccccccccccccccccccc-cccCCCCCCEEECCCC
Confidence            55555444  2221144445555554     1111 2444555555555444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.5e-12  Score=94.08  Aligned_cols=119  Identities=23%  Similarity=0.185  Sum_probs=103.9

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      +.++.+++|++|++++|.++..+..+..+++|+.++++++.+..++ ..+..+.+++.+.+++|.+..+|        .+
T Consensus        71 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          71 QVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             ECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccc
Confidence            5678899999999999999988888899999999999999988664 55678899999999999887765        79


Q ss_pred             eEEEeeceeccccCCCC-C-CCccccceeec-----cccccccCCCCCcCEEEEece
Q 047314          117 KHVCFNEFREMVVNPPV-E-ASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      +.+++++|.+.  .++. . +.+++|++|++     ..+|..+..+++|+.|++++.
T Consensus       151 ~~l~l~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         151 EKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             CEEECTTSCCS--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred             hhccccccccc--ccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCC
Confidence            99999999999  5654 4 88999999999     678888889999999999863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.37  E-value=8.5e-13  Score=86.14  Aligned_cols=81  Identities=20%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC---------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP---------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp---------~L  116 (173)
                      +.+..+++|+.|++++|.++.+|+.+..+++|+.+++++|.++.+| .++.+++|+.+++++|.+..++         +|
T Consensus        14 ~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L   92 (124)
T d1dcea3          14 CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL   92 (124)
T ss_dssp             CCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTC
T ss_pred             cccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCccCCCCCchhhcCCCCC
Confidence            3478899999999999999999999999999999999999999886 5899999999999999887665         79


Q ss_pred             eEEEeeceecc
Q 047314          117 KHVCFNEFREM  127 (173)
Q Consensus       117 ~~L~l~~n~~~  127 (173)
                      +.+++++|.+.
T Consensus        93 ~~L~l~~N~i~  103 (124)
T d1dcea3          93 VLLNLQGNSLC  103 (124)
T ss_dssp             CEEECTTSGGG
T ss_pred             CEEECCCCcCC
Confidence            99999999988

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.36  E-value=2.6e-12  Score=90.20  Aligned_cols=119  Identities=18%  Similarity=0.190  Sum_probs=95.8

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCC------CcceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPI------PLLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~l------p~L~~L  119 (173)
                      +.+..+++|++|++++|.++.+++ +.++++|+.+++++|.+..++ .+..+++|+.++++++....+      ++|+.+
T Consensus        56 ~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L  133 (199)
T d2omxa2          56 DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL  133 (199)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cccccCCCcCcCccccccccCccc-ccCCccccccccccccccccc-ccccccccccccccccccccccccchhhhhHHh
Confidence            457789999999999999987665 889999999999999887775 478899999999998855443      389999


Q ss_pred             EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      ++++|.+.  .++....+++|+.|++     ..++ .++++++|+.|+++++...
T Consensus       134 ~l~~n~l~--~~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         134 ELSSNTIS--DISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCC--CCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred             hhhhhhhc--ccccccccccccccccccccccCCc-cccCCCCCCEEECCCCCCC
Confidence            99999887  5543377889999988     2332 4789999999999987543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.28  E-value=7.8e-12  Score=87.21  Aligned_cols=91  Identities=21%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             cccEEEecCcccc-cch-hhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC--------cceEEEe
Q 047314           53 LLQVLDLEGVYMA-LLD-SSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCF  121 (173)
Q Consensus        53 ~L~~L~l~~n~l~-~~~-~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l  121 (173)
                      +++.|++++|.|+ ..+ ..+..+++|+.|++++|.+..+ +..+..+++|+.|++++|.+..+|        +|++|++
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            4445555555554 221 2234455555555555544432 233444455555555555443332        4445555


Q ss_pred             eceeccccCCCCC--CCccccceeec
Q 047314          122 NEFREMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       122 ~~n~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      ++|.+.  .++..  ..+++|+++++
T Consensus       110 ~~N~l~--~i~~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_         110 YDNQIS--CVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CSSCCC--EECTTSSTTCTTCCEEEC
T ss_pred             CCcccc--ccCHHHhcCCcccccccc
Confidence            555444  33222  44444444444

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.25  E-value=5.8e-12  Score=93.91  Aligned_cols=115  Identities=28%  Similarity=0.299  Sum_probs=91.4

Q ss_pred             CcccEEEecCcccc---cchhhhCCCCCCcEEeccC-Cccc-ccCccccCCCCccEEEecCCCCCCCC--------cceE
Q 047314           52 RLLQVLDLEGVYMA---LLDSSVGNLIHLRYLDLRK-TWLK-KLPSSMGNLFNLQSLDLSSTLVDPIP--------LLKH  118 (173)
Q Consensus        52 ~~L~~L~l~~n~l~---~~~~~~~~l~~L~~l~l~~-~~~~-~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~  118 (173)
                      .+++.|+++++.++   .+|++++++++|++|++++ |.+. .+|..++++++|++|++++|.+..++        .|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            36888999998877   5788899999999999986 6766 88999999999999999998765543        7889


Q ss_pred             EEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCc-CEEEEecee
Q 047314          119 VCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHL-QFLKLSNIR  167 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L-~~L~l~~~~  167 (173)
                      ++++.|.+.. .+|.. +.++.|+.+++      +.+|..+..+..+ +.+++++..
T Consensus       130 l~l~~N~~~~-~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         130 LDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             EECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             cccccccccc-cCchhhccCcccceeecccccccccccccccccccccccccccccc
Confidence            9999888876 67777 88888988888      4567777777765 566655543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.23  E-value=4.5e-14  Score=99.55  Aligned_cols=123  Identities=20%  Similarity=0.190  Sum_probs=98.5

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      ..+..+++|+.|++++|.|+.++ .+..+++|+.|++++|.++.+|.....+++|+.|++++|.+..++      +|+.|
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L  120 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL  120 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEE
T ss_pred             hHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccccccccccccccccccccc
Confidence            35788999999999999999775 588899999999999999988765566678999999999888776      89999


Q ss_pred             EeeceeccccCCCC--C-CCccccceeecc-----cc-cc----------ccCCCCCcCEEEEeceeeecc
Q 047314          120 CFNEFREMVVNPPV--E-ASLPNLQKLIGT-----EM-VC----------SSGRFSHLQFLKLSNIRVEER  171 (173)
Q Consensus       120 ~l~~n~~~~~~lp~--~-~~l~~L~~L~l~-----~~-~~----------~l~~l~~L~~L~l~~~~~~~~  171 (173)
                      ++++|.+.  .++.  . +.+++|+.|++.     .. +.          .+..+|+|+.||-..++..++
T Consensus       121 ~L~~N~i~--~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~~er  189 (198)
T d1m9la_         121 YMSNNKIT--NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDER  189 (198)
T ss_dssp             EESEEECC--CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTTTTT
T ss_pred             ccccchhc--cccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCHHHH
Confidence            99999998  5553  4 789999999981     11 11          156789999998766655443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.4e-11  Score=88.56  Aligned_cols=120  Identities=23%  Similarity=0.261  Sum_probs=98.4

Q ss_pred             ccccCCCcccEEEecCcccccch-hhhCCCCCCcEEeccCCcccccC-ccccCCCCccEEEecCCCCCCCC--------c
Q 047314           46 FLAKECRLLQVLDLEGVYMALLD-SSVGNLIHLRYLDLRKTWLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~  115 (173)
                      ..|+++++|++|++.+|.+..++ ..+....+|+.+++++|.++.+| ..+..+++|+.|++++|.+..++        +
T Consensus        99 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~  178 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS  178 (284)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             hhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccc
Confidence            57888999999999999988544 45667888999999999999776 45778899999999999776554        8


Q ss_pred             ceEEEeeceeccccCCCCC-CCccccceeec------cccccccCCCCCcCEEEEece
Q 047314          116 LKHVCFNEFREMVVNPPVE-ASLPNLQKLIG------TEMVCSSGRFSHLQFLKLSNI  166 (173)
Q Consensus       116 L~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~l~~~  166 (173)
                      |+.+.+++|.+.+ ..|.. +.+++|++|++      +..+..++.+++|+.|++++.
T Consensus       179 L~~l~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         179 LDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cchhhhhhccccc-cChhHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            9999999999984 44666 88999999998      334456889999999999874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.20  E-value=2.4e-11  Score=90.51  Aligned_cols=43  Identities=19%  Similarity=0.264  Sum_probs=33.8

Q ss_pred             ccccCCCcccEEEecC-cccc-cchhhhCCCCCCcEEeccCCccc
Q 047314           46 FLAKECRLLQVLDLEG-VYMA-LLDSSVGNLIHLRYLDLRKTWLK   88 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~-n~l~-~~~~~~~~l~~L~~l~l~~~~~~   88 (173)
                      +.++++++|++|++++ |.++ .+|.+++++++|++|++++|.+.
T Consensus        70 ~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~  114 (313)
T d1ogqa_          70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS  114 (313)
T ss_dssp             GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE
T ss_pred             hHHhcCccccccccccccccccccccccccccccchhhhcccccc
Confidence            5677888888888876 6677 78888888888888888877655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=7.4e-11  Score=82.55  Aligned_cols=111  Identities=23%  Similarity=0.266  Sum_probs=91.6

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHV  119 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L  119 (173)
                      +.++++++|+.|++++|.+..++ .+.+++.|+.++++++..... ..+..+++|+.+++++|.+..++      +++.+
T Consensus        78 ~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L  155 (199)
T d2omxa2          78 TPLKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDI-DPLKNLTNLNRLELSSNTISDISALSGLTSLQQL  155 (199)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             ccccCCccccccccccccccccc-ccccccccccccccccccccc-cccchhhhhHHhhhhhhhhccccccccccccccc
Confidence            45889999999999999988765 488999999999998877654 35778999999999999776655      89999


Q ss_pred             EeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEE
Q 047314          120 CFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFL  161 (173)
Q Consensus       120 ~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L  161 (173)
                      ++.+|.+.  .++..+++++|++|++     ..++ .++.+++|+.|
T Consensus       156 ~l~~n~l~--~l~~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         156 NFSSNQVT--DLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             ECCSSCCC--CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             cccccccc--CCccccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            99999988  5553388999999999     3333 57788888875

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.9e-11  Score=83.23  Aligned_cols=98  Identities=22%  Similarity=0.229  Sum_probs=81.7

Q ss_pred             hhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEeeceeccccCCCCC--CCccccc
Q 047314           70 SVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCFNEFREMVVNPPVE--ASLPNLQ  141 (173)
Q Consensus        70 ~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l~~n~~~~~~lp~~--~~l~~L~  141 (173)
                      .+.+...++.|++++|+++.+|..+..+++|+.|++++|.+..++      +|+.|++++|.+.  .++..  ..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~--~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC--RIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC--EECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhccccccc--CCCccccccccccc
Confidence            356778899999999999999876678999999999999776544      8999999999998  67665  6799999


Q ss_pred             eeec-----cccc--cccCCCCCcCEEEEeceeee
Q 047314          142 KLIG-----TEMV--CSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       142 ~L~l-----~~~~--~~l~~l~~L~~L~l~~~~~~  169 (173)
                      .|++     ..++  ..+..+++|+.|+++++...
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc
Confidence            9999     3343  35788999999999987543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.14  E-value=5.2e-11  Score=82.91  Aligned_cols=107  Identities=19%  Similarity=0.158  Sum_probs=55.4

Q ss_pred             cEEEecCcccccchhhhCCCCCCcEEeccCCccc-cc-CccccCCCCccEEEecCCCCCCCC--------cceEEEeece
Q 047314           55 QVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLK-KL-PSSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEF  124 (173)
Q Consensus        55 ~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~-~~-p~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n  124 (173)
                      ++++.+++.++.+|..+.  .+++.|++++|.++ .. +..++.+++|+.|++++|.+..++        +|+.|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            345555555555555442  34555666666554 23 233455556666666555444333        5556666666


Q ss_pred             eccccCCCC-C-CCccccceeec-----ccc-ccccCCCCCcCEEEEec
Q 047314          125 REMVVNPPV-E-ASLPNLQKLIG-----TEM-VCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       125 ~~~~~~lp~-~-~~l~~L~~L~l-----~~~-~~~l~~l~~L~~L~l~~  165 (173)
                      .+.  .++. . .++++|++|++     ..+ +..+..+++|++|++++
T Consensus        89 ~l~--~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~  135 (192)
T d1w8aa_          89 KIK--EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLAS  135 (192)
T ss_dssp             CCC--EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred             ccc--ccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccc
Confidence            555  3433 2 55556666655     222 22355555566655554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=1.9e-10  Score=81.85  Aligned_cols=117  Identities=21%  Similarity=0.234  Sum_probs=75.9

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----------
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----------  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----------  114 (173)
                      +.+..+++|+.|++++|.++.+++ +..+.+++++++++|.++.++ .+..++.|+.+.++++....++           
T Consensus        57 ~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l  134 (227)
T d1h6ua2          57 EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL  134 (227)
T ss_dssp             TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEE
T ss_pred             hhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccc-cccccccccccccccccccccchhccccchhhh
Confidence            346778888888888888775543 677788888888877766553 4667777777777776433221           


Q ss_pred             -----------------cceEEEeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEecee
Q 047314          115 -----------------LLKHVCFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       115 -----------------~L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                                       +|+.+.+++|.+.  ..+..+++++|+.|++     ..++ .++++++|++|+++++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~  206 (227)
T d1h6ua2         135 YLDLNQITNISPLAGLTNLQYLSIGNAQVS--DLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQ  206 (227)
T ss_dssp             ECCSSCCCCCGGGGGCTTCCEEECCSSCCC--CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSC
T ss_pred             hchhhhhchhhhhccccccccccccccccc--cchhhcccccceecccCCCccCCCh-hhcCCCCCCEEECcCCc
Confidence                             4666666666554  2222256677777776     2222 35667777777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.1e-10  Score=84.18  Aligned_cols=121  Identities=23%  Similarity=0.245  Sum_probs=77.6

Q ss_pred             ccccCCCcccEEEecCcccccc--------------------------hhhhCCCCCCcEEeccCCcccccC-ccccCCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALL--------------------------DSSVGNLIHLRYLDLRKTWLKKLP-SSMGNLF   98 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~--------------------------~~~~~~l~~L~~l~l~~~~~~~~p-~~l~~l~   98 (173)
                      ..|.++++|++|++++|.+..+                          +..+.++++|+.++++.|.+..++ ..+....
T Consensus        50 ~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  129 (284)
T d1ozna_          50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA  129 (284)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             HHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhc
Confidence            3577788888888887765422                          333455666777777666665443 3445566


Q ss_pred             CccEEEecCCCCCCCC--------cceEEEeeceeccccCCCC-C-CCccccceeec------cccccccCCCCCcCEEE
Q 047314           99 NLQSLDLSSTLVDPIP--------LLKHVCFNEFREMVVNPPV-E-ASLPNLQKLIG------TEMVCSSGRFSHLQFLK  162 (173)
Q Consensus        99 ~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~~~~~lp~-~-~~l~~L~~L~l------~~~~~~l~~l~~L~~L~  162 (173)
                      +|+.+++++|.++.+|        +|+.|++++|.+.  .++. . .++++|+.+++      ...|..+..+++|+.|+
T Consensus       130 ~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~--~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~  207 (284)
T d1ozna_         130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (284)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             ccchhhhccccccccChhHhccccchhhcccccCccc--ccchhhhccccccchhhhhhccccccChhHhhhhhhccccc
Confidence            6777777776665554        5677777777776  4433 3 66677777766      23356677778888887


Q ss_pred             Eeceee
Q 047314          163 LSNIRV  168 (173)
Q Consensus       163 l~~~~~  168 (173)
                      +++...
T Consensus       208 l~~N~i  213 (284)
T d1ozna_         208 LFANNL  213 (284)
T ss_dssp             CCSSCC
T ss_pred             cccccc
Confidence            777554

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.08  E-value=1.2e-10  Score=82.09  Aligned_cols=116  Identities=19%  Similarity=0.182  Sum_probs=94.3

Q ss_pred             CCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEeec
Q 047314           50 ECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCFNE  123 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l~~  123 (173)
                      .+.+++.|++.+|.++.++ .+..+++|+.|++++|.++.++ .++.+++|+.|++++|.+..+|      +|+.+++.+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTT
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCcc-ccccCcccccccccccccccccccccccccccccccc
Confidence            4678999999999998665 4788999999999999999876 4688999999999999887765      899999999


Q ss_pred             eeccccCCCCCCCccccceeec----cccccccCCCCCcCEEEEeceeee
Q 047314          124 FREMVVNPPVEASLPNLQKLIG----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       124 n~~~~~~lp~~~~l~~L~~L~l----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                      |.+.  .++....++.++.+++    -..+..+..+++|+.++++++...
T Consensus       122 ~~~~--~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~  169 (210)
T d1h6ta2         122 NGIS--DINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS  169 (210)
T ss_dssp             SCCC--CCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred             cccc--cccccccccccccccccccccccccccccccccccccccccccc
Confidence            9877  5543377788888887    122345778999999999887543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.06  E-value=5.4e-10  Score=84.54  Aligned_cols=116  Identities=22%  Similarity=0.249  Sum_probs=70.4

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccC---------------------ccccCCCCccEEE
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLP---------------------SSMGNLFNLQSLD  104 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p---------------------~~l~~l~~L~~L~  104 (173)
                      +.+..+++++.+++.+|.++.+++ +..+++|+.++++++.+..++                     ..+..+++++.++
T Consensus       235 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~  313 (384)
T d2omza2         235 GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLT  313 (384)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEE
T ss_pred             chhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEE
Confidence            455666777777777777665443 566666777777666554332                     2244556666666


Q ss_pred             ecCCCCCCCC------cceEEEeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEec
Q 047314          105 LSSTLVDPIP------LLKHVCFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       105 l~~~~~~~lp------~L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~  165 (173)
                      +++|.+..++      +|+.|++++|.++  .++..+.+++|++|++     ..++ .+.++++|+.|++++
T Consensus       314 ls~n~l~~l~~l~~l~~L~~L~L~~n~l~--~l~~l~~l~~L~~L~l~~N~l~~l~-~l~~l~~L~~L~L~~  382 (384)
T d2omza2         314 LYFNNISDISPVSSLTKLQRLFFANNKVS--DVSSLANLTNINWLSAGHNQISDLT-PLANLTRITQLGLND  382 (384)
T ss_dssp             CCSSCCSCCGGGGGCTTCCEEECCSSCCC--CCGGGGGCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCC
T ss_pred             CCCCCCCCCcccccCCCCCEEECCCCCCC--CChhHcCCCCCCEEECCCCcCCCCh-hhccCCCCCEeeCCC
Confidence            6666554443      6777777777666  4442256677777776     2222 266677777777665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=6.2e-12  Score=88.36  Aligned_cols=112  Identities=21%  Similarity=0.222  Sum_probs=91.4

Q ss_pred             cccEEEecCc--ccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-------cceEEEeec
Q 047314           53 LLQVLDLEGV--YMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-------LLKHVCFNE  123 (173)
Q Consensus        53 ~L~~L~l~~n--~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-------~L~~L~l~~  123 (173)
                      .++.+++.+.  .++.++.++..+++|+.|++++|.++.++ .+..+++|+.|++++|.+..+|       +|+.|++++
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY  102 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccccccccccccccccccccc
Confidence            3455666654  35578889999999999999999999885 5889999999999999888887       799999999


Q ss_pred             eeccccCCCCCCCccccceeec-----cccc--cccCCCCCcCEEEEecee
Q 047314          124 FREMVVNPPVEASLPNLQKLIG-----TEMV--CSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       124 n~~~~~~lp~~~~l~~L~~L~l-----~~~~--~~l~~l~~L~~L~l~~~~  167 (173)
                      |.+.  .++....+++|+.|++     ..++  ..+..+++|+.|+++++.
T Consensus       103 N~i~--~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         103 NQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EECC--CHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccc--ccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            9988  5532277899999998     3333  358899999999998753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.01  E-value=8.3e-10  Score=83.51  Aligned_cols=119  Identities=19%  Similarity=0.242  Sum_probs=93.2

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC-----------
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP-----------  114 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp-----------  114 (173)
                      +....+++++.|++.+|.++.++ .+..+++++.+++++|.++.+++ ++.+++|+.++++++.+..++           
T Consensus       213 ~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l  290 (384)
T d2omza2         213 TPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNL  290 (384)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             CcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCCCCccccccccccc
Confidence            44677889999999999998764 67889999999999999887654 788899999999988665443           


Q ss_pred             -----------------cceEEEeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEeceeee
Q 047314          115 -----------------LLKHVCFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSNIRVE  169 (173)
Q Consensus       115 -----------------~L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~~~~~  169 (173)
                                       +++.+++++|.+.  .++....+++|+.|++     ..++ .++++++|++|+++++...
T Consensus       291 ~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~--~l~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         291 ELNENQLEDISPISNLKNLTYLTLYFNNIS--DISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             ECCSSCCSCCGGGGGCTTCSEEECCSSCCS--CCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccccchhcccCeEECCCCCCC--CCcccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCC
Confidence                             6677778877777  4443367888999988     2333 5888999999999886543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.01  E-value=1.2e-09  Score=80.73  Aligned_cols=119  Identities=15%  Similarity=0.106  Sum_probs=94.5

Q ss_pred             ccccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCCCCCCCC--------cc
Q 047314           46 FLAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSSTLVDPIP--------LL  116 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~~~~~lp--------~L  116 (173)
                      ..+..+++|+++++.+|.++.+|..+  .++++.+++++|... ..+..+..++.++.|++++|.+..++        +|
T Consensus       144 ~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         144 GAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             TGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             cccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccc
Confidence            56788899999999999988776654  578999999988877 55677888899999999998776654        89


Q ss_pred             eEEEeeceeccccCCCCC-CCccccceeec-----cccc-------cccCCCCCcCEEEEeceee
Q 047314          117 KHVCFNEFREMVVNPPVE-ASLPNLQKLIG-----TEMV-------CSSGRFSHLQFLKLSNIRV  168 (173)
Q Consensus       117 ~~L~l~~n~~~~~~lp~~-~~l~~L~~L~l-----~~~~-------~~l~~l~~L~~L~l~~~~~  168 (173)
                      +.|++++|.+.  .+|.. ..+++|++|++     ..++       ......++|+.|++++...
T Consensus       222 ~~L~L~~N~L~--~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         222 RELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             eeeeccccccc--ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            99999999998  78877 88999999998     2222       2345677888999887653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.99  E-value=1e-09  Score=81.05  Aligned_cols=76  Identities=24%  Similarity=0.309  Sum_probs=65.5

Q ss_pred             CcccEEEecCcccccchh-hhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-----cceEEEeece
Q 047314           52 RLLQVLDLEGVYMALLDS-SVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-----LLKHVCFNEF  124 (173)
Q Consensus        52 ~~L~~L~l~~n~l~~~~~-~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-----~L~~L~l~~n  124 (173)
                      +++++|++++|.++.+|+ .+.++++|+.+++++|.+..+ |..+..+++|+.+++++|.+..+|     .+..+....|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n  110 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN  110 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcccc
Confidence            679999999999998876 588999999999999999866 567899999999999999888877     6777777777


Q ss_pred             ecc
Q 047314          125 REM  127 (173)
Q Consensus       125 ~~~  127 (173)
                      .+.
T Consensus       111 ~l~  113 (305)
T d1xkua_         111 EIT  113 (305)
T ss_dssp             CCC
T ss_pred             chh
Confidence            666

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2.8e-09  Score=71.71  Aligned_cols=82  Identities=20%  Similarity=0.199  Sum_probs=67.7

Q ss_pred             ccccCCCcccEEEecCc-ccccch-hhhCCCCCCcEEeccCCccccc-CccccCCCCccEEEecCCCCCCCC-------c
Q 047314           46 FLAKECRLLQVLDLEGV-YMALLD-SSVGNLIHLRYLDLRKTWLKKL-PSSMGNLFNLQSLDLSSTLVDPIP-------L  115 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~l~~L~~l~l~~~~~~~~-p~~l~~l~~L~~L~l~~~~~~~lp-------~  115 (173)
                      ..+..+++++.|++.++ .++.++ ..|.++++|+.|++++|+++.+ |..|..+++|++|++++|.+..+|       .
T Consensus        25 ~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~  104 (156)
T d2ifga3          25 HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS  104 (156)
T ss_dssp             TTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC
T ss_pred             ccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccc
Confidence            34677889999999766 488654 4588899999999999999977 456889999999999999888887       7


Q ss_pred             ceEEEeeceecc
Q 047314          116 LKHVCFNEFREM  127 (173)
Q Consensus       116 L~~L~l~~n~~~  127 (173)
                      |+.|++++|.+.
T Consensus       105 l~~L~L~~Np~~  116 (156)
T d2ifga3         105 LQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCC
T ss_pred             ccccccCCCccc
Confidence            889999988764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.90  E-value=8e-09  Score=73.18  Aligned_cols=115  Identities=23%  Similarity=0.276  Sum_probs=80.6

Q ss_pred             cccCCCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccc---------------------cCccccCCCCccEEEe
Q 047314           47 LAKECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKK---------------------LPSSMGNLFNLQSLDL  105 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~---------------------~p~~l~~l~~L~~L~l  105 (173)
                      .+..+++++++++++|.++.++ .+..+++|+.+.++.+....                     ....+..+++|+.+.+
T Consensus        80 ~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  158 (227)
T d1h6ua2          80 PLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSI  158 (227)
T ss_dssp             GGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEEC
T ss_pred             cccccccccccccccccccccc-cccccccccccccccccccccchhccccchhhhhchhhhhchhhhhccccccccccc
Confidence            4666666777777666666443 35566666666665543221                     1123566788999999


Q ss_pred             cCCCCCC------CCcceEEEeeceeccccCCCCCCCccccceeec-----cccccccCCCCCcCEEEEec
Q 047314          106 SSTLVDP------IPLLKHVCFNEFREMVVNPPVEASLPNLQKLIG-----TEMVCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       106 ~~~~~~~------lp~L~~L~l~~n~~~~~~lp~~~~l~~L~~L~l-----~~~~~~l~~l~~L~~L~l~~  165 (173)
                      ++|.+..      +++|+.|++++|.+.  .++..+.+++|++|++     ..++ .+.++++|+.|++++
T Consensus       159 ~~n~~~~~~~l~~l~~L~~L~Ls~n~l~--~l~~l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         159 GNAQVSDLTPLANLSKLTTLKADDNKIS--DISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCCCCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             cccccccchhhcccccceecccCCCccC--CChhhcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            9986543      349999999999988  6654478899999999     3444 478999999999975

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.90  E-value=7e-09  Score=77.14  Aligned_cols=85  Identities=19%  Similarity=0.124  Sum_probs=62.1

Q ss_pred             cccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC----cceEEEeeceeccc
Q 047314           53 LLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP----LLKHVCFNEFREMV  128 (173)
Q Consensus        53 ~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp----~L~~L~l~~n~~~~  128 (173)
                      +++.|+++++.++.+|+.   .++|+.|++++|+++.+|..+   .+|+.|++++|.+..++    .|++|++++|.+. 
T Consensus        39 ~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~-  111 (353)
T d1jl5a_          39 QAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-  111 (353)
T ss_dssp             TCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-
T ss_pred             CCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhccccccccccccccc-
Confidence            577888888888877753   457788888888888777643   46777788877655544    6888888888877 


Q ss_pred             cCCCCCCCccccceeec
Q 047314          129 VNPPVEASLPNLQKLIG  145 (173)
Q Consensus       129 ~~lp~~~~l~~L~~L~l  145 (173)
                       .+|..+.+++|++|++
T Consensus       112 -~lp~~~~l~~L~~L~l  127 (353)
T d1jl5a_         112 -KLPELQNSSFLKIIDV  127 (353)
T ss_dssp             -SCCCCTTCTTCCEEEC
T ss_pred             -cccchhhhccceeecc
Confidence             6664466777888776

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=4e-09  Score=70.94  Aligned_cols=95  Identities=13%  Similarity=-0.049  Sum_probs=79.1

Q ss_pred             cCCCcccEEEecCcccccchhhhCCCCCCcEEeccCC-cccccC-ccccCCCCccEEEecCCCCCCCC--------cceE
Q 047314           49 KECRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKT-WLKKLP-SSMGNLFNLQSLDLSSTLVDPIP--------LLKH  118 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~-~~~~~p-~~l~~l~~L~~L~l~~~~~~~lp--------~L~~  118 (173)
                      +.+.....++..++.++..|..+..+++++.|++.++ .++.++ ..|..+++|+.|++++|.+..++        +|+.
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~   84 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR   84 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence            3445566788899988888999999999999999765 588776 56899999999999999887765        8999


Q ss_pred             EEeeceeccccCCCCC-CCccccceeec
Q 047314          119 VCFNEFREMVVNPPVE-ASLPNLQKLIG  145 (173)
Q Consensus       119 L~l~~n~~~~~~lp~~-~~l~~L~~L~l  145 (173)
                      |++++|.+.  .+|.. -....|+.|++
T Consensus        85 L~Ls~N~l~--~l~~~~~~~~~l~~L~L  110 (156)
T d2ifga3          85 LNLSFNALE--SLSWKTVQGLSLQELVL  110 (156)
T ss_dssp             EECCSSCCS--CCCSTTTCSCCCCEEEC
T ss_pred             eeccCCCCc--ccChhhhcccccccccc
Confidence            999999999  88876 44446888888

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.5e-10  Score=85.38  Aligned_cols=122  Identities=20%  Similarity=0.206  Sum_probs=61.1

Q ss_pred             ccccCCCcccEEEecCcccc-cchhhhCCCCCCcEEeccCC-cccc--cCccccCCCCccEEEecCC-CCCC--------
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLDSSVGNLIHLRYLDLRKT-WLKK--LPSSMGNLFNLQSLDLSST-LVDP--------  112 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~l~~L~~l~l~~~-~~~~--~p~~l~~l~~L~~L~l~~~-~~~~--------  112 (173)
                      ..+..+++|++|++.++.++ ..+..+..+++|+.|+++++ .++.  +..-...+++|+.|++++| .+..        
T Consensus        65 ~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~  144 (284)
T d2astb2          65 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  144 (284)
T ss_dssp             HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhc
Confidence            34556666777777766665 55556666666777776663 3441  2222244566666666665 2211        


Q ss_pred             --CCcceEEEeecee--ccccCCCCC-CCccccceeec-------cccccccCCCCCcCEEEEecee
Q 047314          113 --IPLLKHVCFNEFR--EMVVNPPVE-ASLPNLQKLIG-------TEMVCSSGRFSHLQFLKLSNIR  167 (173)
Q Consensus       113 --lp~L~~L~l~~n~--~~~~~lp~~-~~l~~L~~L~l-------~~~~~~l~~l~~L~~L~l~~~~  167 (173)
                        .+.|+.|+++++.  +....+... .++++|++|++       ...+..+.++++|++|++++|.
T Consensus       145 ~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~  211 (284)
T d2astb2         145 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  211 (284)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCC
Confidence              0145555554431  221111222 34455555555       1233345555555555555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=4.7e-08  Score=69.49  Aligned_cols=68  Identities=22%  Similarity=0.230  Sum_probs=43.7

Q ss_pred             ccccCCCcccEEEecCcccc-cch-hhhCCCCCCcEEeccC-Cccccc-CccccCCCCccEEEecCCCCCCC
Q 047314           46 FLAKECRLLQVLDLEGVYMA-LLD-SSVGNLIHLRYLDLRK-TWLKKL-PSSMGNLFNLQSLDLSSTLVDPI  113 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~~~-~~~~~l~~L~~l~l~~-~~~~~~-p~~l~~l~~L~~L~l~~~~~~~l  113 (173)
                      ..|.++++|++|++++|.+. .++ ..+..++.++.+.+.. +.+... +..+..+++|+.+++++|.+...
T Consensus        47 ~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~  118 (242)
T d1xwdc1          47 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL  118 (242)
T ss_dssp             TTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSC
T ss_pred             hHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhccc
Confidence            35677777777777777765 232 2356677777776643 455533 45567778888888887765444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.7e-09  Score=79.54  Aligned_cols=122  Identities=17%  Similarity=0.103  Sum_probs=89.8

Q ss_pred             cCCCcccEEEecCcccc-c-chhhhCCCCCCcEEeccCCccc-ccCccccCCCCccEEEecCC-CCCC---------CCc
Q 047314           49 KECRLLQVLDLEGVYMA-L-LDSSVGNLIHLRYLDLRKTWLK-KLPSSMGNLFNLQSLDLSST-LVDP---------IPL  115 (173)
Q Consensus        49 ~~l~~L~~L~l~~n~l~-~-~~~~~~~l~~L~~l~l~~~~~~-~~p~~l~~l~~L~~L~l~~~-~~~~---------lp~  115 (173)
                      ....+|++|+++++.++ . ++.-+.++++|+.|.++++.+. ..+..++.+++|+.|++++| .++.         .|+
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~  122 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR  122 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHh
Confidence            34568999999999887 3 4455778999999999999887 56677889999999999997 4542         348


Q ss_pred             ceEEEeecee-ccccCCCCC--CCccccceeec-c--------ccccccCCCCCcCEEEEeceeeec
Q 047314          116 LKHVCFNEFR-EMVVNPPVE--ASLPNLQKLIG-T--------EMVCSSGRFSHLQFLKLSNIRVEE  170 (173)
Q Consensus       116 L~~L~l~~n~-~~~~~lp~~--~~l~~L~~L~l-~--------~~~~~l~~l~~L~~L~l~~~~~~~  170 (173)
                      |++|++++|. +....+...  ...+.|+.|++ +        .+.....++++|++|++++|...+
T Consensus       123 L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~it  189 (284)
T d2astb2         123 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK  189 (284)
T ss_dssp             CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC
T ss_pred             ccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCC
Confidence            9999999863 332122222  34578888887 1        122234578999999999876544

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=3.4e-07  Score=64.85  Aligned_cols=96  Identities=15%  Similarity=0.030  Sum_probs=41.4

Q ss_pred             ccCCCcccEEEecCcccccchh--hhCCCCCCcEEeccCCcccccC-ccccCC-CCccEEEecCCCCCCCC-------cc
Q 047314           48 AKECRLLQVLDLEGVYMALLDS--SVGNLIHLRYLDLRKTWLKKLP-SSMGNL-FNLQSLDLSSTLVDPIP-------LL  116 (173)
Q Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~--~~~~l~~L~~l~l~~~~~~~~p-~~l~~l-~~L~~L~l~~~~~~~lp-------~L  116 (173)
                      |..+++|+.+++.+|.+...+.  .+..+..+..+...++.+..++ ..+..+ ..++.+++.+|.+..++       ++
T Consensus        99 ~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l  178 (242)
T d1xwdc1          99 FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQL  178 (242)
T ss_dssp             EECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCE
T ss_pred             ccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhh
Confidence            4445555555555554442221  1222333333333333444332 223333 24555555555444333       23


Q ss_pred             eEE-EeeceeccccCCCCC--CCccccceeec
Q 047314          117 KHV-CFNEFREMVVNPPVE--ASLPNLQKLIG  145 (173)
Q Consensus       117 ~~L-~l~~n~~~~~~lp~~--~~l~~L~~L~l  145 (173)
                      ..+ .+.+|.+.  .+|..  .++++|+.|++
T Consensus       179 ~~~~~l~~n~l~--~l~~~~f~~l~~L~~L~L  208 (242)
T d1xwdc1         179 DELNLSDNNNLE--ELPNDVFHGASGPVILDI  208 (242)
T ss_dssp             EEEECTTCTTCC--CCCTTTTTTSCCCSEEEC
T ss_pred             hccccccccccc--cccHHHhcCCCCCCEEEC
Confidence            333 23444555  45442  55666666666

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.33  E-value=3.1e-06  Score=62.33  Aligned_cols=71  Identities=20%  Similarity=0.115  Sum_probs=51.8

Q ss_pred             CCcccEEEecCcccccchhhhCCCCCCcEEeccCCcccccCccccCCCCccEEEecCCCCCCCC------cceEEEeece
Q 047314           51 CRLLQVLDLEGVYMALLDSSVGNLIHLRYLDLRKTWLKKLPSSMGNLFNLQSLDLSSTLVDPIP------LLKHVCFNEF  124 (173)
Q Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~l~~L~~l~l~~~~~~~~p~~l~~l~~L~~L~l~~~~~~~lp------~L~~L~l~~n  124 (173)
                      .++|++|++++|.++.+|..+   .+|+.|++.+|+++.++.-   .+.|++|++++|.+..+|      +|+++++.++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhh---ccccccccccccccccccchhhhccceeeccccc
Confidence            468999999999999887654   4677778877777765531   135788888888776665      6777877776


Q ss_pred             ecc
Q 047314          125 REM  127 (173)
Q Consensus       125 ~~~  127 (173)
                      .+.
T Consensus       131 ~~~  133 (353)
T d1jl5a_         131 SLK  133 (353)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            655

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=5.2e-08  Score=65.65  Aligned_cols=57  Identities=23%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             hCCCCCCcEEeccCCcccccC---ccccCCCCccEEEecCCCCCCCC--------cceEEEeeceecc
Q 047314           71 VGNLIHLRYLDLRKTWLKKLP---SSMGNLFNLQSLDLSSTLVDPIP--------LLKHVCFNEFREM  127 (173)
Q Consensus        71 ~~~l~~L~~l~l~~~~~~~~p---~~l~~l~~L~~L~l~~~~~~~lp--------~L~~L~l~~n~~~  127 (173)
                      ...++.|+.|++++|.++.++   ..+..+++|+.|++++|.+..++        .|+.+++.+|.+.
T Consensus        61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            345777888888888877543   34566788888888888777765        5677777777776

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=2.4e-07  Score=70.78  Aligned_cols=93  Identities=17%  Similarity=0.143  Sum_probs=66.2

Q ss_pred             cccEEEecCcccc--cchhhhCCCCCCcEEeccCCccc-----ccCccccCCCCccEEEecCCCCCC---------C---
Q 047314           53 LLQVLDLEGVYMA--LLDSSVGNLIHLRYLDLRKTWLK-----KLPSSMGNLFNLQSLDLSSTLVDP---------I---  113 (173)
Q Consensus        53 ~L~~L~l~~n~l~--~~~~~~~~l~~L~~l~l~~~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~---------l---  113 (173)
                      +|+.|++++++++  .+..-+..+++++.+++++|.++     .++..+..+++|+.|++++|.++.         +   
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            5889999999988  34445667888999999999876     234556788899999999987742         1   


Q ss_pred             -CcceEEEeeceeccccC---CCCC-CCccccceeec
Q 047314          114 -PLLKHVCFNEFREMVVN---PPVE-ASLPNLQKLIG  145 (173)
Q Consensus       114 -p~L~~L~l~~n~~~~~~---lp~~-~~l~~L~~L~l  145 (173)
                       ++|+.|++++|.+....   ++.. ..+++|++|++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L  119 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL  119 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred             CCCCCEEECCCCCccccccccccchhhcccccccccc
Confidence             16888888888776311   1222 45566666666

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.84  E-value=2.8e-06  Score=63.19  Aligned_cols=122  Identities=16%  Similarity=0.043  Sum_probs=65.6

Q ss_pred             ccccCCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCcccc-cC----c---------cccCCCCccEEEec
Q 047314           46 FLAKECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTWLKK-LP----S---------SMGNLFNLQSLDLS  106 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~~~~-~p----~---------~l~~l~~L~~L~l~  106 (173)
                      ..+..+++|+.|++++|.++ .    +...+...++|+.|++++|.+.. ..    .         .....+.|+.+.++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            34556677777888777765 2    33334456777777777765431 00    0         01234456666666


Q ss_pred             CCCCCCC------------CcceEEEeeceeccccC----CCCC-CCccccceeec----------cccccccCCCCCcC
Q 047314          107 STLVDPI------------PLLKHVCFNEFREMVVN----PPVE-ASLPNLQKLIG----------TEMVCSSGRFSHLQ  159 (173)
Q Consensus       107 ~~~~~~l------------p~L~~L~l~~n~~~~~~----lp~~-~~l~~L~~L~l----------~~~~~~l~~l~~L~  159 (173)
                      +|.+..-            +.|+.++++.|.+....    +... ..+++|+.|++          ..+...+..+++|+
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccch
Confidence            6654321            15666666666654210    1222 45566666666          11233455666666


Q ss_pred             EEEEecee
Q 047314          160 FLKLSNIR  167 (173)
Q Consensus       160 ~L~l~~~~  167 (173)
                      +|++++|.
T Consensus       247 ~L~Ls~n~  254 (344)
T d2ca6a1         247 ELGLNDCL  254 (344)
T ss_dssp             EEECTTCC
T ss_pred             hhhhhcCc
Confidence            66666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=8.9e-07  Score=59.36  Aligned_cols=67  Identities=21%  Similarity=0.159  Sum_probs=53.3

Q ss_pred             ccccCCCcccEEEecCcccccc---hhhhCCCCCCcEEeccCCcccccCc-cccCCCCccEEEecCCCCCC
Q 047314           46 FLAKECRLLQVLDLEGVYMALL---DSSVGNLIHLRYLDLRKTWLKKLPS-SMGNLFNLQSLDLSSTLVDP  112 (173)
Q Consensus        46 ~~~~~l~~L~~L~l~~n~l~~~---~~~~~~l~~L~~l~l~~~~~~~~p~-~l~~l~~L~~L~l~~~~~~~  112 (173)
                      .++..+++|++|++++|.++.+   +..+..+++|+.|++++|.++.++. ......+|+.+++++|.+..
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            3456789999999999999854   3456789999999999999997764 23344578999999998754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.26  E-value=4.4e-05  Score=56.50  Aligned_cols=61  Identities=11%  Similarity=0.088  Sum_probs=28.4

Q ss_pred             CCCcccEEEecCcccc-----cchhhhCCCCCCcEEeccCCcccc------cCccccCCCCccEEEecCCCC
Q 047314           50 ECRLLQVLDLEGVYMA-----LLDSSVGNLIHLRYLDLRKTWLKK------LPSSMGNLFNLQSLDLSSTLV  110 (173)
Q Consensus        50 ~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~l~l~~~~~~~------~p~~l~~l~~L~~L~l~~~~~  110 (173)
                      ..+.++.+.+.+|.++     .+...+...+.++.+++++|.+..      +...+..+++|+.|++++|.+
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccc
Confidence            3445555555555443     122223344555555555555431      122334455555555555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=5.5e-05  Score=57.18  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=53.3

Q ss_pred             cccCCCcccEEEecCcccc-----cchhhhCCCCCCcEEeccCCcccc-----cCcccc-CCCCccEEEecCCCCCC---
Q 047314           47 LAKECRLLQVLDLEGVYMA-----LLDSSVGNLIHLRYLDLRKTWLKK-----LPSSMG-NLFNLQSLDLSSTLVDP---  112 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-----~~~~~~~~l~~L~~l~l~~~~~~~-----~p~~l~-~l~~L~~L~l~~~~~~~---  112 (173)
                      .++.++++++|++.+|.++     .++..+..+++|+.|++++|.++.     +...+. ...+|+.|++++|.++.   
T Consensus        22 l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            3555677888888888776     234445677788888888887652     222332 23468888888886643   


Q ss_pred             ---------CCcceEEEeeceecc
Q 047314          113 ---------IPLLKHVCFNEFREM  127 (173)
Q Consensus       113 ---------lp~L~~L~l~~n~~~  127 (173)
                               .++|+.|++++|.+.
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ccccchhhccccccccccccccch
Confidence                     227888888887665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.75  E-value=0.00089  Score=44.32  Aligned_cols=79  Identities=15%  Similarity=0.185  Sum_probs=53.8

Q ss_pred             cCCCcccEEEecCc-ccc-c----chhhhCCCCCCcEEeccCCccc-c----cCccccCCCCccEEEecCCCCCCC----
Q 047314           49 KECRLLQVLDLEGV-YMA-L----LDSSVGNLIHLRYLDLRKTWLK-K----LPSSMGNLFNLQSLDLSSTLVDPI----  113 (173)
Q Consensus        49 ~~l~~L~~L~l~~n-~l~-~----~~~~~~~l~~L~~l~l~~~~~~-~----~p~~l~~l~~L~~L~l~~~~~~~l----  113 (173)
                      .+.++|+.|+++++ .++ .    +...+...+.|+.|++++|.+. .    +...+...+.|+.|++++|.++.-    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            34577888888874 455 2    3445666778888888888776 2    223445567888888888866541    


Q ss_pred             --------CcceEEEeeceecc
Q 047314          114 --------PLLKHVCFNEFREM  127 (173)
Q Consensus       114 --------p~L~~L~l~~n~~~  127 (173)
                              ++|++|++++|...
T Consensus        92 l~~aL~~n~sL~~L~l~~n~~~  113 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQRQS  113 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSC
T ss_pred             HHHHHHhCCcCCEEECCCCcCC
Confidence                    17888888877544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.69  E-value=0.00041  Score=46.05  Aligned_cols=67  Identities=13%  Similarity=0.124  Sum_probs=35.6

Q ss_pred             cccCCCcccEEEecCcccc-c----chhhhCCCCCCcEEeccCCcccc-----cCccccCCCCccEEEecCCCCCCC
Q 047314           47 LAKECRLLQVLDLEGVYMA-L----LDSSVGNLIHLRYLDLRKTWLKK-----LPSSMGNLFNLQSLDLSSTLVDPI  113 (173)
Q Consensus        47 ~~~~l~~L~~L~l~~n~l~-~----~~~~~~~l~~L~~l~l~~~~~~~-----~p~~l~~l~~L~~L~l~~~~~~~l  113 (173)
                      .+...++|+.|++++|.+. .    +...+...+.|+.|++++|.++.     +...+...++|+.|++++|.+..+
T Consensus        39 ~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~  115 (167)
T d1pgva_          39 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVL  115 (167)
T ss_dssp             HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCC
T ss_pred             HHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCc
Confidence            4445556666666666655 1    22223344556666666665551     223444555666666666544443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.37  E-value=0.038  Score=35.82  Aligned_cols=97  Identities=11%  Similarity=0.009  Sum_probs=57.2

Q ss_pred             cCCCcccEEEecC-cccc-----cchhhhCCCCCCcEEeccCCccc-c----cCccccCCCCccEEEecCCCCCCC----
Q 047314           49 KECRLLQVLDLEG-VYMA-----LLDSSVGNLIHLRYLDLRKTWLK-K----LPSSMGNLFNLQSLDLSSTLVDPI----  113 (173)
Q Consensus        49 ~~l~~L~~L~l~~-n~l~-----~~~~~~~~l~~L~~l~l~~~~~~-~----~p~~l~~l~~L~~L~l~~~~~~~l----  113 (173)
                      .+.+.|+.|++.+ +.++     .+...+...++|+.|++++|.++ .    +...+...++++.+++++|.++.-    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            4456788888876 3454     23344556777888888888765 2    233445567788888887755431    


Q ss_pred             --------CcceEEEee--ceeccccC---CCCC-CCccccceeec
Q 047314          114 --------PLLKHVCFN--EFREMVVN---PPVE-ASLPNLQKLIG  145 (173)
Q Consensus       114 --------p~L~~L~l~--~n~~~~~~---lp~~-~~l~~L~~L~l  145 (173)
                              ++|+.+++.  .|.+....   +... ...+.|+.|++
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeC
Confidence                    156665554  44443201   2222 35567777776

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.84  E-value=0.046  Score=35.41  Aligned_cols=94  Identities=12%  Similarity=-0.032  Sum_probs=47.1

Q ss_pred             CCCCCCcEEeccC-Cccc-----ccCccccCCCCccEEEecCCCCCCCC------------cceEEEeeceeccccCC--
Q 047314           72 GNLIHLRYLDLRK-TWLK-----KLPSSMGNLFNLQSLDLSSTLVDPIP------------LLKHVCFNEFREMVVNP--  131 (173)
Q Consensus        72 ~~l~~L~~l~l~~-~~~~-----~~p~~l~~l~~L~~L~l~~~~~~~lp------------~L~~L~l~~n~~~~~~l--  131 (173)
                      .+.+.|+.+++.+ +.++     .+...+...++|+.|++++|.++.-.            +++.+++..|.+.....  
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3456666666665 3343     12234445666667777766554311            56666666665542111  


Q ss_pred             -CCC-CCccccceeec------------cccccccCCCCCcCEEEEec
Q 047314          132 -PVE-ASLPNLQKLIG------------TEMVCSSGRFSHLQFLKLSN  165 (173)
Q Consensus       132 -p~~-~~l~~L~~L~l------------~~~~~~l~~l~~L~~L~l~~  165 (173)
                       ... ...++|+.+++            ..+...+...+.|++|++..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence             122 33455554443            12333345566666666543