Citrus Sinensis ID: 047315

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
MNTELDSKLLLVLFIICFSDAFAGGSRTMIAQVKNIHYKETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA
cccHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccEEEEEEEcccccccccccHHHHHHHHHHHHHccccEEEEEcccEEEEEEEEEEccccccccEEEEEEEEEEEcccccccccccEEEEEEcEEEEEEEEcEEEcccccccccccccccccccccccEEEEEEEEEcEEEEEEEEEcccccEEEEEcEEEEEEEEEEEEcccccccccEEEccccccEEEEEEEEcccccEEEEccccEEEEEEEEEEccccccEEEEEEcccccccEEEEEEEEEEEEccccEEEEEEcccccccEEEEEEEEEEEEEEcccccEEEEEEEcccccccccccccEEEEcEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEccccccccEEEEEEEEEEcccccccccc
ccHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccccEEEEHccccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEccccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEcEEEcccccHHccccccccccccccccEEEEEEEEccEEEEEEEEEccccEEEEEEccEEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccEEEEcccccEEEEEEEEEcccccEEEEEccccccccccEEEEEEEEEEEcccccEEEEEccccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccEEEEccccccEccEEcccccc
MNTELDSKLLLVLFIICFSdafaggsrTMIAQVKNIHYKETSSLLVNVKdfgaradgrtddSKAFEAAWKEACETTGavtllvphgtyligpikfagpcknvsniTVQMKGYLIAstnlseyrfgagwvefggvegltltgggtfdgrgakawpyngcpthfnckllptnVKFVAMKKTIVRRITSVNSKSFHIALVECKnfrgskikisapanspntdgihiersssvhvsrshigtgddcisvgqgnsevtiasitcgpghgisvgslgrypnegdvrglvVRDSTMTGTMNGVriktwanspgssaatnmTFENIImnnvsnpiiidqaycpftscptkppsrvklsdiyfknirgtSSSAVAVALEcskgipcqniylenvhldlssgekqptsscknveakyigtqvpppca
MNTELDSKLLLVLFIICFSDAFAGGSRTMIAQVKNIHYKETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRritsvnsksfHIALVECKNFRGSKIKisapanspntdgIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDstmtgtmngvriktwanspgsSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSgekqptsscknveakyigtqvpppca
MNTELDSKLLLVLFIICFSDAFAGGSRTMIAQVKNIHYKETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVefggvegltltgggtfdgrgAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIErsssvhvsrshIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA
*******KLLLVLFIICFSDAFAGGSRTMIAQVKNIHYKETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIK**************************HIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANS****AATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDL****************************
*****DSKLLLVLFIICFSDAFAGGSR*************TSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA
MNTELDSKLLLVLFIICFSDAFAGGSRTMIAQVKNIHYKETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERS**********GTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDL***********KNVEAKYIGTQVPPPCA
MNTELDSKLLLVLFIICFSDAFAGGS********NIHY**TSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNTELDSKLLLVLFIICFSDAFAGGSRTMIAQVKNIHYKETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query417 2.2.26 [Sep-21-2011]
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.884 0.978 0.473 6e-99
P24548362 Exopolygalacturonase (Fra N/A no 0.841 0.969 0.469 9e-90
Q05967396 Polygalacturonase OS=Nico N/A no 0.887 0.934 0.433 6e-89
Q39766407 Polygalacturonase OS=Goss N/A no 0.875 0.896 0.454 2e-88
Q39786407 Polygalacturonase OS=Goss N/A no 0.875 0.896 0.451 1e-87
P35336467 Polygalacturonase OS=Acti N/A no 0.880 0.785 0.457 1e-87
P35339410 Exopolygalacturonase OS=Z N/A no 0.865 0.880 0.421 1e-86
P49062422 Exopolygalacturonase clon no no 0.935 0.924 0.435 3e-85
P49063444 Exopolygalacturonase clon no no 0.877 0.824 0.456 5e-85
P26216410 Exopolygalacturonase OS=Z N/A no 0.952 0.968 0.383 6e-85
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function desciption
 Score =  361 bits (927), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 177/374 (47%), Positives = 246/374 (65%), Gaps = 5/374 (1%)

Query: 40  ETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPC 99
           ++S  + NV D+GA+  G  D S+A   AWK AC + G  T+L+P G Y +G +   GPC
Sbjct: 4   QSSGSVFNVNDYGAKGAG--DISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPC 61

Query: 100 KNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCP 159
           K  S I  Q+ G + A  + S+++   GWV F  ++GLT++G GT DG+G  AW  N C 
Sbjct: 62  KG-SKIGFQIDGVVKAPADPSKFK-SDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCD 119

Query: 160 THFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTD 219
            + NCK    N++F  +K  +VR ITS+NSK FHI ++EC++     + ++AP  S NTD
Sbjct: 120 KNPNCKHAAMNLRFDFLKHAMVRDITSLNSKMFHINVLECEDITFQHVTVTAPGTSINTD 179

Query: 220 GIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDV 279
           GIH+  S  V ++ + I TGDDCIS+G G+  VTI  + CGPGHGIS+GSLGRY NE +V
Sbjct: 180 GIHVGISKGVTITNTKIATGDDCISIGPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEV 239

Query: 280 RGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSC 339
           RG+ V+  T +GTMNGVR+KTW NSP   AAT++TF+++ MNNV NP+I+DQ YCP+  C
Sbjct: 240 RGITVKGCTFSGTMNGVRVKTWPNSP-PGAATDLTFQDLTMNNVQNPVILDQEYCPYGQC 298

Query: 340 PTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSS 399
             + PSR+KLS+I F NIRGTS+  VAV + CS G+PC N+ +  ++L         TS+
Sbjct: 299 SRQAPSRIKLSNINFNNIRGTSTGKVAVVIACSHGMPCSNMKIGEINLSYRGAGGPATST 358

Query: 400 CKNVEAKYIGTQVP 413
           C NV+  + G QVP
Sbjct: 359 CSNVKPTFSGKQVP 372
May function in depolymerizing pectin during pollen development, germination, and tube growth. Acts as an exo-polygalacturonase.
Platanus acerifolia (taxid: 140101)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 6EC: 7
>sp|P24548|PGLR_OENOR Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|P35339|PGLR3_MAIZE Exopolygalacturonase OS=Zea mays GN=PG2C PE=2 SV=1 Back     alignment and function description
>sp|P49062|PGLR1_ARATH Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana GN=PGA3 PE=2 SV=1 Back     alignment and function description
>sp|P49063|PGLR2_ARATH Exopolygalacturonase clone GBGA483 OS=Arabidopsis thaliana GN=At3g07850 PE=1 SV=2 Back     alignment and function description
>sp|P26216|PGLR1_MAIZE Exopolygalacturonase OS=Zea mays GN=PG1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
224102769410 predicted protein [Populus trichocarpa] 0.904 0.919 0.784 1e-176
359474790424 PREDICTED: exopolygalacturonase-like [Vi 0.983 0.966 0.723 1e-176
449454426406 PREDICTED: exopolygalacturonase-like [Cu 0.880 0.903 0.706 1e-155
297804362414 glycoside hydrolase family 28 protein [A 0.944 0.951 0.617 1e-153
15236790414 glycoside hydrolase family 28 protein / 0.894 0.900 0.658 1e-152
297744463388 unnamed protein product [Vitis vinifera] 0.896 0.963 0.644 1e-147
2832691362 polygalacturonase-like protein [Arabidop 0.836 0.964 0.671 1e-146
34223511399 oil palm polygalacturonase allergen PEST 0.952 0.994 0.621 1e-140
414868396390 TPA: hypothetical protein ZEAMMB73_39165 0.882 0.943 0.557 1e-118
242078937391 hypothetical protein SORBIDRAFT_07g01697 0.875 0.933 0.565 1e-117
>gi|224102769|ref|XP_002312795.1| predicted protein [Populus trichocarpa] gi|222849203|gb|EEE86750.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 299/381 (78%), Positives = 334/381 (87%), Gaps = 4/381 (1%)

Query: 37  HYKETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFA 96
           H+K  SSLL +VK FGARADGRTDDSKAF AAWKEAC  TG V LL+P GTYLIGP+KFA
Sbjct: 34  HHKGNSSLLFDVKRFGARADGRTDDSKAFIAAWKEACRATGKVELLIPKGTYLIGPVKFA 93

Query: 97  GPCKNVSNITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYN 156
           GPCKNVS++T    GYL A+  LS Y  G GWVEFG +E LTLTGGGTFDG+GAKAWPYN
Sbjct: 94  GPCKNVSSLT----GYLKATAKLSRYGSGTGWVEFGWLERLTLTGGGTFDGQGAKAWPYN 149

Query: 157 GCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSP 216
            C     CKLLPTNVKFVAM +T+V+ ITS+NSK FHIALVECKNF+G+KIKISAPA+SP
Sbjct: 150 NCTNDSKCKLLPTNVKFVAMNQTVVQGITSLNSKFFHIALVECKNFKGTKIKISAPADSP 209

Query: 217 NTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNE 276
           NTDGIH+ERSSSV++S+S IGTGDDCIS+GQGNS+VTI  I CGPGHGISVGSLGRY +E
Sbjct: 210 NTDGIHVERSSSVYISQSLIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSLGRYEDE 269

Query: 277 GDVRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPF 336
           GDV GLVVRD  ++GTMNG+RIKTWANSPGSSAATNMTFENI+MNNV+NPIIIDQ+YCPF
Sbjct: 270 GDVSGLVVRDCAISGTMNGIRIKTWANSPGSSAATNMTFENIVMNNVTNPIIIDQSYCPF 329

Query: 337 TSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQP 396
           +SC +  PS+VKLSDIYFK IRGTSSSAVAVALECSKGIPCQNIYLENVHL+LSSGEKQ 
Sbjct: 330 SSCISTEPSKVKLSDIYFKQIRGTSSSAVAVALECSKGIPCQNIYLENVHLELSSGEKQA 389

Query: 397 TSSCKNVEAKYIGTQVPPPCA 417
           TSSCKNV A+YIG Q+PPPCA
Sbjct: 390 TSSCKNVRARYIGEQIPPPCA 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359474790|ref|XP_002279959.2| PREDICTED: exopolygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454426|ref|XP_004144956.1| PREDICTED: exopolygalacturonase-like [Cucumis sativus] gi|449471315|ref|XP_004153273.1| PREDICTED: exopolygalacturonase-like [Cucumis sativus] gi|449500188|ref|XP_004161029.1| PREDICTED: exopolygalacturonase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297804362|ref|XP_002870065.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] gi|297315901|gb|EFH46324.1| glycoside hydrolase family 28 protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15236790|ref|NP_193552.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] gi|7268611|emb|CAB78820.1| polygalacturonase-like protein [Arabidopsis thaliana] gi|332658607|gb|AEE84007.1| glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297744463|emb|CBI37725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|2832691|emb|CAA16789.1| polygalacturonase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|34223511|gb|AAQ62998.1| oil palm polygalacturonase allergen PEST459 [Elaeis guineensis] Back     alignment and taxonomy information
>gi|414868396|tpg|DAA46953.1| TPA: hypothetical protein ZEAMMB73_391654 [Zea mays] Back     alignment and taxonomy information
>gi|242078937|ref|XP_002444237.1| hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] gi|241940587|gb|EES13732.1| hypothetical protein SORBIDRAFT_07g016970 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
TAIR|locus:2141877414 AT4G18180 [Arabidopsis thalian 0.894 0.900 0.598 1.4e-126
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.894 0.989 0.440 5.4e-86
TAIR|locus:2088252445 AT3G14040 [Arabidopsis thalian 0.875 0.820 0.436 3.2e-81
TAIR|locus:2077442444 AT3G07850 [Arabidopsis thalian 0.875 0.822 0.434 2.9e-80
TAIR|locus:2164773395 AT5G48140 [Arabidopsis thalian 0.884 0.934 0.398 6.5e-74
TAIR|locus:2077437401 AT3G07840 [Arabidopsis thalian 0.880 0.915 0.398 8.4e-74
TAIR|locus:2024680422 PGA4 "polygalacturonase 4" [Ar 0.952 0.940 0.403 4.6e-73
TAIR|locus:2046555 664 AT2G33160 [Arabidopsis thalian 0.882 0.554 0.396 9.6e-73
TAIR|locus:2032125404 AT1G78400 [Arabidopsis thalian 0.870 0.898 0.396 2e-72
TAIR|locus:2077412397 AT3G07830 [Arabidopsis thalian 0.848 0.891 0.396 6.1e-71
TAIR|locus:2141877 AT4G18180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 233/389 (59%), Positives = 295/389 (75%)

Query:    40 ETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGA-VTLLVPHGTYLIGPIKFAGP 98
             ++S  LV+V+ FGARA+   D +KAF AAW +AC+++ + V L++P G + +G ++F+GP
Sbjct:    29 KSSVFLVDVRSFGARANDHRDHTKAFVAAWDKACKSSSSSVNLIIPRGEFSVGSLRFSGP 88

Query:    99 CKNVSNITVQMKGYLIASTNLSEYRFGAGWVXXXXXXXXXXXXXXXXXXXXAKAWPYNGC 158
             C NVSN+TV++K    AST+LS+YR G GW+                    A AWP+N C
Sbjct:    89 CTNVSNLTVRVK----ASTDLSKYRSGGGWIQFGWINGLTLTGGGTFDGQGALAWPFNNC 144

Query:   159 PTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNT 218
              +  NCKLLPT++KFV M +T+VRRI+SVNSK FHIALVEC++F+G+++ I+AP++SPNT
Sbjct:   145 TSDSNCKLLPTSLKFVGMNRTVVRRISSVNSKFFHIALVECRDFKGTRLNITAPSDSPNT 204

Query:   219 DGIHIEXXXXXXXXXXXIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGD 278
             DGIHIE           I TGDDC+S+GQGNS++TI SI CGPGHGISVGSLGRYPNE D
Sbjct:   205 DGIHIERSSNVYFSRSHIATGDDCVSIGQGNSQITITSIKCGPGHGISVGSLGRYPNEKD 264

Query:   279 VRGLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTS 338
             V GLVV+D  ++GT NG+RIKTWANSPG SAATNMTFENIIMNNV+NPIIIDQ+YCPF+S
Sbjct:   265 VNGLVVKDCKISGTTNGIRIKTWANSPGLSAATNMTFENIIMNNVTNPIIIDQSYCPFSS 324

Query:   339 CPTKPPSRVKLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSS---GEKQ 395
             C +  PS+V+LS+IYFKNIRGTSSS VAV L CS+G+PC+ +YLENVHLDLSS   G KQ
Sbjct:   325 CISNVPSKVELSEIYFKNIRGTSSSLVAVQLHCSRGMPCKKVYLENVHLDLSSSDGGRKQ 384

Query:   396 PT--------SSCKNVEAKYIGTQVPPPC 416
              +        SSC+NV A YIGTQ+PPPC
Sbjct:   385 SSNRGNEAVSSSCRNVRANYIGTQIPPPC 413
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
TAIR|locus:2088252 AT3G14040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077442 AT3G07850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164773 AT5G48140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077437 AT3G07840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024680 PGA4 "polygalacturonase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046555 AT2G33160 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032125 AT1G78400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077412 AT3G07830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 0.0
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 1e-107
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-102
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 1e-101
PLN02155394 PLN02155, PLN02155, polygalacturonase 2e-87
PLN03010409 PLN03010, PLN03010, polygalacturonase 3e-83
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-78
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-24
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 1e-11
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information 
 Score =  673 bits (1738), Expect = 0.0
 Identities = 279/409 (68%), Positives = 326/409 (79%), Gaps = 10/409 (2%)

Query: 9   LLLVLFIICFSDAFAGGSRTMIAQVKNIHYKETSSLLVNVKDFGARADGRTDDSKAFEAA 68
           LLL++ +   +      +            K +S+ L +V+ FGARA+G TDDSKAF AA
Sbjct: 6   LLLLVVVFIVNALVLSSAGG------GSVVKGSSTFLFDVRSFGARANGHTDDSKAFMAA 59

Query: 69  WKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYRFGAGW 128
           WK AC +TGAVTLL+P GTY IGP++F GPC NVS++T  +K    A+T+LS Y  G  W
Sbjct: 60  WKAACASTGAVTLLIPPGTYYIGPVQFHGPCTNVSSLTFTLK----AATDLSRYGSGNDW 115

Query: 129 VEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVN 188
           +EFG V GLTLTGGGTFDG+GA AWP+N CP   +CKLLPT+VKFV M  T+VR ITSVN
Sbjct: 116 IEFGWVNGLTLTGGGTFDGQGAAAWPFNKCPIRKDCKLLPTSVKFVNMNNTVVRGITSVN 175

Query: 189 SKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQG 248
           SK FHIALVEC+NF+GS +KISAP++SPNTDGIHIERSS V++S S IGTGDDCIS+GQG
Sbjct: 176 SKFFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQG 235

Query: 249 NSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVVRDSTMTGTMNGVRIKTWANSPGSS 308
           NS+VTI  I CGPGHGISVGSLGRYPNEGDV GLVVRD T TGT NG+RIKTWANSPG S
Sbjct: 236 NSQVTITRIRCGPGHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKS 295

Query: 309 AATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVA 368
           AATNMTFENI+MNNV+NPIIIDQ YCPF SC +K PS V LSDIYFKNIRGTSSS VAV 
Sbjct: 296 AATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSSQVAVL 355

Query: 369 LECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA 417
           L+CS+G+PCQ +YL++VHLDLSSGE   +SSC+NV AKYIGTQ+PPPC 
Sbjct: 356 LKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404

Length = 404
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 417
PLN02155394 polygalacturonase 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03010409 polygalacturonase 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.9
PLN02793443 Probable polygalacturonase 99.89
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.88
PLN02218431 polygalacturonase ADPG 99.88
PLN03003456 Probable polygalacturonase At3g15720 99.87
PLN02155394 polygalacturonase 99.87
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.86
PLN03010409 polygalacturonase 99.85
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.81
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.73
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.37
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.07
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.87
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 98.81
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.77
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.76
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.73
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.69
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.65
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.56
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.56
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.55
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.53
PLN02480343 Probable pectinesterase 98.49
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.47
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.47
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.45
smart00656190 Amb_all Amb_all domain. 98.42
PLN02634359 probable pectinesterase 98.3
PLN02682369 pectinesterase family protein 98.27
PLN02176340 putative pectinesterase 98.23
PRK10531422 acyl-CoA thioesterase; Provisional 98.22
smart00656190 Amb_all Amb_all domain. 98.15
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.1
PLN02665366 pectinesterase family protein 98.07
PLN02773317 pectinesterase 98.07
PLN02497331 probable pectinesterase 98.04
PLN02304379 probable pectinesterase 97.97
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.94
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.92
PLN02671359 pectinesterase 97.89
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.88
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.87
PLN02432293 putative pectinesterase 97.86
PLN02916502 pectinesterase family protein 97.86
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.82
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.77
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.77
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.77
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.76
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.73
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.72
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.71
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.7
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.69
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.66
PLN02301548 pectinesterase/pectinesterase inhibitor 97.65
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.62
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.6
PLN02197588 pectinesterase 97.58
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.5
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.48
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.48
PLN02314586 pectinesterase 97.47
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 97.12
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.91
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.7
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 96.01
PLN02773317 pectinesterase 95.94
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 94.88
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 94.78
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 94.38
PLN02480343 Probable pectinesterase 94.22
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.66
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 93.6
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 93.57
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 93.15
PLN02682369 pectinesterase family protein 92.79
PLN02665366 pectinesterase family protein 92.27
PLN02634359 probable pectinesterase 91.59
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 91.54
PLN02170529 probable pectinesterase/pectinesterase inhibitor 91.35
PLN02916502 pectinesterase family protein 91.26
PLN02671359 pectinesterase 91.19
PLN02432293 putative pectinesterase 91.16
PLN02506537 putative pectinesterase/pectinesterase inhibitor 90.4
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 90.24
PLN02201520 probable pectinesterase/pectinesterase inhibitor 90.11
PRK10531422 acyl-CoA thioesterase; Provisional 90.11
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 90.08
PLN02497331 probable pectinesterase 90.01
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 89.98
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 89.96
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 89.76
PLN02304379 probable pectinesterase 89.69
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 89.65
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 89.58
PLN02488509 probable pectinesterase/pectinesterase inhibitor 89.56
PLN02416541 probable pectinesterase/pectinesterase inhibitor 89.42
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 89.37
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 89.33
PLN02176340 putative pectinesterase 89.25
PLN02301548 pectinesterase/pectinesterase inhibitor 89.21
PLN02468565 putative pectinesterase/pectinesterase inhibitor 88.97
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 88.82
PLN02484587 probable pectinesterase/pectinesterase inhibitor 88.73
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 88.62
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 88.6
PLN02314586 pectinesterase 88.21
PLN02313587 Pectinesterase/pectinesterase inhibitor 87.89
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 87.11
PLN02197588 pectinesterase 87.03
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 84.95
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=2.3e-76  Score=576.81  Aligned_cols=366  Identities=41%  Similarity=0.756  Sum_probs=335.3

Q ss_pred             eeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEeeeEEecCccCccceEEeEecEEEeecCccccc
Q 047315           44 LLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKGYLIASTNLSEYR  123 (417)
Q Consensus        44 ~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~~~  123 (417)
                      +++||+||||+|||.||||+|||+||+++|+..||++|+||+|+|++++|.|.|+||  |+++|+++|+|+.+.++..|.
T Consensus        26 ~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gpck--snv~l~l~G~l~~~~d~~~~~  103 (394)
T PLN02155         26 NVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCK--SKITFQVAGTVVAPEDYRTFG  103 (394)
T ss_pred             cEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEcccCC--CCceEEEeeEEECcccccccc
Confidence            489999999999999999999999998889988999999999999999999998888  999999999999888887776


Q ss_pred             CCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceecEE
Q 047315          124 FGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFR  203 (417)
Q Consensus       124 ~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~  203 (417)
                      ....|+.+.+.+++.|+| |+|||+|+.||...  ......+.+|+++.+.+|++++|++++++|+|.|++++..|++++
T Consensus       104 ~~~~wi~~~~~~~i~i~G-G~iDGqG~~ww~~~--~~~~~~~~~p~~i~~~~~~nv~i~gitl~nSp~w~i~~~~~~nv~  180 (394)
T PLN02155        104 NSGYWILFNKVNRFSLVG-GTFDARANGFWSCR--KSGQNCPPGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVV  180 (394)
T ss_pred             ccceeEEEECcCCCEEEc-cEEecCceeEEEcc--cCCCCCCCcccceeEEEeeeEEEECeEEEcCCCeEEEEECeeeEE
Confidence            556799999999999999 99999999999743  233344557889999999999999999999999999999999999


Q ss_pred             EEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEEEEE
Q 047315          204 GSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLV  283 (417)
Q Consensus       204 i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~ni~  283 (417)
                      |++++|.++.+++|+|||++.+|+||+|+||.|.++||||+++++++||+|+||+|..+||++|||++++...+.|+||+
T Consensus       181 i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~g~~~~~~~V~nV~  260 (394)
T PLN02155        181 VRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSLAKELNEDGVENVT  260 (394)
T ss_pred             EEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccccccCCCCcEEEEE
Confidence            99999999988899999999999999999999999999999999999999999999999999999998765568999999


Q ss_pred             EEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCC-CCCCCCCCceeEeeEEEEeEEEEec
Q 047315          284 VRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFT-SCPTKPPSRVKLSDIYFKNIRGTSS  362 (417)
Q Consensus       284 i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~~v~nI~~~ni~~~~~  362 (417)
                      ++||+|.++.+|++||+|.+.++|+ ++||+|+||+|+++++||.|+|.|++.. .|+ ...+.+.++||+|+||+++..
T Consensus       261 v~n~~~~~t~~GirIKT~~~~~gG~-v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~-~~~s~v~i~~It~~ni~gt~~  338 (394)
T PLN02155        261 VSSSVFTGSQNGVRIKSWARPSTGF-VRNVFFQDLVMKNVENPIIIDQNYCPTHEGCP-NEYSGVKISQVTYKNIQGTSA  338 (394)
T ss_pred             EEeeEEeCCCcEEEEEEecCCCCEE-EEEEEEEeEEEcCccccEEEEecccCCCCCCc-CCCCCeEEEEEEEEeeEEEec
Confidence            9999999999999999997644788 9999999999999999999999997753 354 335567999999999999987


Q ss_pred             CCceEEEeecCCCceeeEEEEeEEEEeCCCCCCCCeeeecceeeeeceecCCCCC
Q 047315          363 SAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAKYIGTQVPPPCA  417 (417)
Q Consensus       363 ~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~  417 (417)
                      ...++.+.|.++.||+||+|+||+++..++ .+..+.|+||++.+.+.++||+|.
T Consensus       339 ~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~-~~~~~~C~n~~G~~~~~~~p~~c~  392 (394)
T PLN02155        339 TQEAMKLVCSKSSPCTGITLQDIKLTYNKG-TPATSFCFNAVGKSLGVIQPTSCL  392 (394)
T ss_pred             CCceEEEEeCCCCCEEEEEEEeeEEEecCC-CccCcEEeccEeEEcccCCccccc
Confidence            677899999999999999999999998864 567899999999999999999994

>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 3e-16
1nhc_A336 Structural Insights Into The Processivity Of Endopo 5e-14
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 5e-12
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-11
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 1e-10
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 1e-10
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 3e-10
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 4e-10
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 1e-05
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 30/247 (12%)
Query: 168 PTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIEXXX 227
           P  ++    K   +  ++ +NS +FH+   +   F   K  I  P+ + NTDGI      
Sbjct: 151 PRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSK 210
Query: 228 XXXXXXXXIGTGDDCISVG--QGNSE---VTIASITCGPGHGISVGS--LGRYPNEGDVR 280
                   I TGDD +++   +G +E   ++I     G GHG+S+GS  +G Y       
Sbjct: 211 NITIAYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSETMGVY------- 263
Query: 281 GLVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCP 340
            + V D  M GT NG+RIK+  ++ G      + + N++M NV+ PI+ID  Y       
Sbjct: 264 NVTVDDLKMNGTTNGLRIKSDKSAAG--VVNGVRYSNVVMKNVAKPIVIDTVY------E 315
Query: 341 TKPPSRV-KLSDIYFKNIRGTSSSAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSS 399
            K  S V   SDI FK++   +   V +  E +K  P + + ++NV L   S     T  
Sbjct: 316 KKEGSNVPDWSDITFKDVTSETKGVVVLNGENAKK-PIE-VTMKNVKLTSDS-----TWQ 368
Query: 400 CKNVEAK 406
            KNV  K
Sbjct: 369 IKNVNVK 375
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-121
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 1e-112
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-109
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 1e-102
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 1e-101
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-98
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 2e-96
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 7e-96
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 5e-90
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 4e-85
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-36
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 1e-29
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 2e-27
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 6e-23
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-19
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 7e-15
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 7e-10
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 2e-09
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 1e-07
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  357 bits (918), Expect = e-121
 Identities = 79/376 (21%), Positives = 141/376 (37%), Gaps = 33/376 (8%)

Query: 46  VNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIG-PIKFAGPCKNVSN 104
            N+  +GA AD  TD   A  +AW  AC++ G   + +P G Y +   +   G       
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWA-ACKSGG--LVYIPSGNYALNTWVTLTGGS----A 73

Query: 105 ITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNC 164
             +Q+ G +  +   S         +    E  + T  G   G G               
Sbjct: 74  TAIQLDGIIYRTGTASGNMIA--VTDTTDFELFSSTSKGAVQGFGYVYHA--------EG 123

Query: 165 KLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIE 224
                 ++   +    V  I  V++ +FH  +  C +     + I    N    DGI + 
Sbjct: 124 TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVW 182

Query: 225 RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVV 284
             S++ V    +   D+C++V    + + + SI C    G ++GSLG      DV  +V 
Sbjct: 183 -GSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGAD---TDVTDIVY 238

Query: 285 RDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPP 344
           R+     +     IK+     GS   +N+  EN I +  +  + ID  +           
Sbjct: 239 RNVYTWSSNQMYMIKSN---GGSGTVSNVLLENFIGHGNAYSLDIDGYWSS---MTAVAG 292

Query: 345 SRVKLSDIYFKNIRGTSSSA---VAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCK 401
             V+L++I  KN +GT ++      + + CS   PC ++ LE++ +   SG       C+
Sbjct: 293 DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESGSS-ELYLCR 351

Query: 402 NVEAKYIGTQVPPPCA 417
           +        +      
Sbjct: 352 SAYGSGYCLKDSSSHT 367
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.94
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.92
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.91
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.9
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.88
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.87
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.87
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.85
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.85
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.82
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.82
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.8
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.66
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.6
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.59
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.47
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.46
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.43
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.31
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.28
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.21
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.8
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.8
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.8
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.77
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.76
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.76
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.74
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.67
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.52
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.5
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.46
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.37
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.34
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.34
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.32
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.29
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.27
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.2
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.17
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.15
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.05
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.02
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.92
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.86
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.8
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.7
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.69
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.55
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.3
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.25
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.16
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.79
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.36
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.29
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.19
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 95.78
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.72
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.33
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 94.72
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 94.71
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 92.98
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 88.45
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 82.34
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=3.7e-64  Score=502.67  Aligned_cols=346  Identities=26%  Similarity=0.400  Sum_probs=305.4

Q ss_pred             eeeccCccccCceeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEeeeEEecCccCccceEEeEec
Q 047315           32 QVKNIHYKETSSLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIGPIKFAGPCKNVSNITVQMKG  111 (417)
Q Consensus        32 ~~~~~~~~~~~~~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~~l~l~~~~~~~s~~~l~~~G  111 (417)
                      .++.+..|.+|+.++||++|||+|||.+|||+|||+||+ +|++.||++|+||+|+|++++|.|+      |+++|+++|
T Consensus        14 i~~~~~~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~ggg~v~vP~G~yl~~~l~l~------s~v~l~l~g   86 (448)
T 3jur_A           14 ILNHVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQGGGRLIVPEGVFLTGPIHLK------SNIELHVKG   86 (448)
T ss_dssp             HHHHCCCCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHTCEEEEECSSEEEESCEECC------TTEEEEESS
T ss_pred             HHhhccCCCCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcCCeEEEECCCcEEEeeeEeC------CCcEEEEEE
Confidence            344455677788899999999999999999999999986 5776789999999999999999998      999999999


Q ss_pred             EEEeecCcccc-cC------------CCCeEEEcCceeeEEecCeEEcCCC--cccccCCCCCC----------------
Q 047315          112 YLIASTNLSEY-RF------------GAGWVEFGGVEGLTLTGGGTFDGRG--AKAWPYNGCPT----------------  160 (417)
Q Consensus       112 ~l~~~~~~~~~-~~------------~~~~i~~~~~~nv~I~G~G~idg~g--~~~~~~~~~~~----------------  160 (417)
                      +|+++.++++| +.            ..+||++.+++||+|+|.|+|||+|  +.||.......                
T Consensus        87 tL~~s~d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~  166 (448)
T 3jur_A           87 TIKFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKK  166 (448)
T ss_dssp             EEEECCCGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHH
T ss_pred             EEEecCCHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhh
Confidence            99999999888 32            1468999999999999999999999  88997532100                


Q ss_pred             ----------------CCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceecEEEEeEEEECCCCCCCCCeEEee
Q 047315          161 ----------------HFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIE  224 (417)
Q Consensus       161 ----------------~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~v~i~n~~i~~~~~~~~~DGi~~~  224 (417)
                                      ......||++|.+.+|+|++|++++++|+|.|++++..|++++|++++|.++  ++++|||++.
T Consensus       167 l~~~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~  244 (448)
T 3jur_A          167 LKEMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPE  244 (448)
T ss_dssp             HHHHHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCB
T ss_pred             hhhhhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCcccccc
Confidence                            0123478999999999999999999999999999999999999999999986  5799999999


Q ss_pred             cceeEEEEeeEEecCCceEEecCC-----------ceeEEEEeeEE--cCCc-eEEEcccccCCCCCcEEEEEEEeeEEe
Q 047315          225 RSSSVHVSRSHIGTGDDCISVGQG-----------NSEVTIASITC--GPGH-GISVGSLGRYPNEGDVRGLVVRDSTMT  290 (417)
Q Consensus       225 ~s~nv~I~n~~i~~gdD~i~i~s~-----------s~nv~i~n~~~--~~~~-gi~igs~~~~~~~~~v~ni~i~n~~~~  290 (417)
                      +|+||+|+||+|.++||||+++++           ++||+|+||+|  ..+| |++|||+    ..+.++||+|+||++.
T Consensus       245 ~s~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~----~~~~v~nV~v~n~~~~  320 (448)
T 3jur_A          245 SCKYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSE----MSGGVRNVVARNNVYM  320 (448)
T ss_dssp             SCEEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSS----CTTCEEEEEEESCEEE
T ss_pred             CCcCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCc----ccCcEEEEEEEEEEEe
Confidence            999999999999999999999997           79999999999  6677 8999998    5688999999999999


Q ss_pred             cCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccE-EEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEecCCceEEE
Q 047315          291 GTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPI-IIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTSSSAVAVAL  369 (417)
Q Consensus       291 ~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~~~~~~~~i  369 (417)
                      ++.+|++||++.+. +|+ ++||+|+||++.++.+++ .|++.|+..  +.   ...+.++||+|+||+++. ...++.+
T Consensus       321 ~t~~GirIKt~~g~-gG~-v~nI~f~ni~m~~v~~~~i~I~~~Y~~~--~~---~~~~~i~nI~~~NI~~t~-~~~~i~i  392 (448)
T 3jur_A          321 NVERALRLKTNSRR-GGY-MENIFFIDNVAVNVSEEVIRINLRYDNE--EG---EYLPVVRSVFVKNLKATG-GKYAVRI  392 (448)
T ss_dssp             SCSEEEEEECCTTT-CSE-EEEEEEESCEEEEESSEEEEEESCGGGC--CC---SCCCEEEEEEEESCEEEE-CSEEEEE
T ss_pred             cccceEEEEEEcCC-Cce-EeeEEEEEEEEECCccccEEEEeeccCC--CC---CCCceEEEEEEEeEEEEe-cceEEEE
Confidence            99999999999876 688 999999999999999988 999999764  22   234589999999999998 5788999


Q ss_pred             eecCCCceeeEEEEeEEEEeCCCCCCCCeeeec
Q 047315          370 ECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKN  402 (417)
Q Consensus       370 ~~~~~~~~~~i~~~nv~i~~~~~~~~~~~~c~~  402 (417)
                      .|.++.||+||+|+||++++.+.    ...|.+
T Consensus       393 ~g~~~~p~~~I~~~nv~i~~~~~----~~~~~~  421 (448)
T 3jur_A          393 EGLENDYVKDILISDTIIEGAKI----SVLLEF  421 (448)
T ss_dssp             ECBTTBCEEEEEEEEEEEESCSE----EEEEEE
T ss_pred             EeCCCCCEeeEEEEEEEEEcccc----ceeEec
Confidence            99999999999999999997652    345554
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 417
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 3e-80
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 6e-80
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-75
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-71
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-65
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 4e-63
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 1e-61
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 8e-57
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  251 bits (642), Expect = 3e-80
 Identities = 80/365 (21%), Positives = 143/365 (39%), Gaps = 33/365 (9%)

Query: 46  VNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIG-PIKFAGPCKNVSN 104
            N+  +GA AD  TD   A  +AW  AC++ G   + +P G Y +   +   G       
Sbjct: 21  CNILSYGAVADNSTDVGPAITSAWA-ACKSGG--LVYIPSGNYALNTWVTLTGGS----A 73

Query: 105 ITVQMKGYLIASTNLSEYRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNC 164
             +Q+ G +  +   S         +    E  + T  G   G G               
Sbjct: 74  TAIQLDGIIYRTGTASGNMIA--VTDTTDFELFSSTSKGAVQGFGYVYHA--------EG 123

Query: 165 KLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKNFRGSKIKISAPANSPNTDGIHIE 224
                 ++   +    V  I  V++ +FH  +  C +     + I    N    DGI + 
Sbjct: 124 TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDVW 182

Query: 225 RSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRGLVV 284
            S+ + V    +   D+C++V    + + + SI C    G ++GSLG    + DV  +V 
Sbjct: 183 GSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTDIVY 238

Query: 285 RDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPP 344
           R+     +     IK+     GS   +N+  EN I +  +  + ID  +   T+      
Sbjct: 239 RNVYTWSSNQMYMIKSN---GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV---AG 292

Query: 345 SRVKLSDIYFKNIRGTSSSA---VAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCK 401
             V+L++I  KN +GT ++      + + CS   PC ++ LE++ +   SG       C+
Sbjct: 293 DGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESG-SSELYLCR 351

Query: 402 NVEAK 406
           +    
Sbjct: 352 SAYGS 356
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.89
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.88
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.86
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.85
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.85
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.8
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.73
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.66
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.66
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.64
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.49
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.44
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.22
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.15
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.01
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.99
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.94
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.86
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.84
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.81
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.77
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.75
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.55
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.41
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.84
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.73
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 95.93
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 94.81
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.78
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 92.61
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 90.19
d1tywa_554 P22 tailspike protein {Salmonella phage P22 [TaxId 83.22
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 83.21
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=7.5e-61  Score=474.76  Aligned_cols=335  Identities=23%  Similarity=0.378  Sum_probs=294.2

Q ss_pred             ceeEEeeeCCccCCCCcccHHHHHHHHHHHhhcCCCeEEEecCCeeeEe-eeEEecCccCccceEEeEecEEEeecCccc
Q 047315           43 SLLVNVKDFGARADGRTDDSKAFEAAWKEACETTGAVTLLVPHGTYLIG-PIKFAGPCKNVSNITVQMKGYLIASTNLSE  121 (417)
Q Consensus        43 ~~~~nv~d~GA~gdg~tDdt~aiq~Al~~a~~~~ggg~V~ip~GtY~~~-~l~l~~~~~~~s~~~l~~~G~l~~~~~~~~  121 (417)
                      .++|||+||||+|||+||||+|||+||+ ||+  +|++|+||+|+|++. ++.|++.    +++.|+++|+|++......
T Consensus        18 ~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~----~~~~l~~~G~i~~~~~~~~   90 (422)
T d1rmga_          18 TKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG----SATAIQLDGIIYRTGTASG   90 (422)
T ss_dssp             HCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC----EEEEEEECSEEEECCCCSS
T ss_pred             CcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC----CceEEEEeEEEEeccCCcc
Confidence            4699999999999999999999999984 784  478999999999887 6999876    7899999999998765544


Q ss_pred             ccCCCCeEEEcCceeeEEecCeEEcCCCcccccCCCCCCCCCCCCCcceEEEEeecceEEEeeEEecCCcceEEEeceec
Q 047315          122 YRFGAGWVEFGGVEGLTLTGGGTFDGRGAKAWPYNGCPTHFNCKLLPTNVKFVAMKKTIVRRITSVNSKSFHIALVECKN  201 (417)
Q Consensus       122 ~~~~~~~i~~~~~~nv~I~G~G~idg~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~nv~I~~v~i~n~~~~~i~~~~~~~  201 (417)
                      +..  .+....+.+.+.+.|.|+|||+|..||..        ...+|++|.+.+|+|++|++++++|++.|++.+..|++
T Consensus        91 ~~~--~~~~~~~~~~~~~~g~G~IdG~G~~~~~~--------~~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~  160 (422)
T d1rmga_          91 NMI--AVTDTTDFELFSSTSKGAVQGFGYVYHAE--------GTYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSD  160 (422)
T ss_dssp             EEE--EEEEEEEEEEECSSSCCEEECCTHHHHTT--------TCCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEE
T ss_pred             CEE--EeccCccEEEEEeecceEEecCcceecCC--------CCCCCcEEEEEeeeeeEEECcEecCCCceEEEEecccc
Confidence            321  33344455666678899999999999974        24568999999999999999999999999999999999


Q ss_pred             EEEEeEEEECCCCCCCCCeEEeecceeEEEEeeEEecCCceEEecCCceeEEEEeeEEcCCceEEEcccccCCCCCcEEE
Q 047315          202 FRGSKIKISAPANSPNTDGIHIERSSSVHVSRSHIGTGDDCISVGQGNSEVTIASITCGPGHGISVGSLGRYPNEGDVRG  281 (417)
Q Consensus       202 v~i~n~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~gdD~i~i~s~s~nv~i~n~~~~~~~gi~igs~~~~~~~~~v~n  281 (417)
                      ++|+|++|..+. ..++|||++.+ +||+|+||++.++||||+++++++||+|+|++|..+||++||+++.   ...++|
T Consensus       161 v~i~nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~---~~~V~n  235 (422)
T d1rmga_         161 GEVYNMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA---DTDVTD  235 (422)
T ss_dssp             EEEEEEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT---TEEEEE
T ss_pred             EEEEeeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC---CCCEEE
Confidence            999999999864 57899999976 5899999999999999999999999999999999999999999863   467999


Q ss_pred             EEEEeeEEecCceEEEEEEecCCCCCeeEEeEEEEeEEEecCCccEEEEeeeCCCCCCCCCCCCceeEeeEEEEeEEEEe
Q 047315          282 LVVRDSTMTGTMNGVRIKTWANSPGSSAATNMTFENIIMNNVSNPIIIDQAYCPFTSCPTKPPSRVKLSDIYFKNIRGTS  361 (417)
Q Consensus       282 i~i~n~~~~~~~~gi~i~~~~~~~~g~~i~ni~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~v~nI~~~ni~~~~  361 (417)
                      |+|+||++.++.+++++|++.+  .|. ++||+|+||+++++.+||.|+++|+....|.   .++..++||+|+||+++.
T Consensus       236 V~v~n~~~~~s~~g~~ik~~~g--~G~-V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~~---~~~v~isnIt~~Ni~GT~  309 (422)
T d1rmga_         236 IVYRNVYTWSSNQMYMIKSNGG--SGT-VSNVLLENFIGHGNAYSLDIDGYWSSMTAVA---GDGVQLNNITVKNWKGTE  309 (422)
T ss_dssp             EEEEEEEEESSSCSEEEEEBBC--CEE-EEEEEEEEEEEEEESCSEEEETBCTTSCCBS---SSCCEEEEEEEEEEEEEE
T ss_pred             EEEEeEEEeCCCceEEEEEcCC--Cce-ecceEEEEEEEecccccEEEecccCCCCCCC---CCCeEEEEEEEEeEEEEe
Confidence            9999999999999999999876  478 9999999999999999999999998876653   456789999999999987


Q ss_pred             c---CCceEEEeecCCCceeeEEEEeEEEEeCCCCCCCCeeeecceee
Q 047315          362 S---SAVAVALECSKGIPCQNIYLENVHLDLSSGEKQPTSSCKNVEAK  406 (417)
Q Consensus       362 ~---~~~~~~i~~~~~~~~~~i~~~nv~i~~~~~~~~~~~~c~~~~~~  406 (417)
                      .   ...++.+.|++..||+||+|+||+|+...+ ..+.+.|+|++|.
T Consensus       310 ~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~g-~~~~~~C~na~G~  356 (422)
T d1rmga_         310 ANGATRPPIRVVCSDTAPCTDLTLEDIAIWTESG-SSELYLCRSAYGS  356 (422)
T ss_dssp             SCTTTSCSEEEECBTTBCEEEEEEEEEEEEESSS-SCEEEEEESEEEE
T ss_pred             cCCcccccEEEEcCCCCCCcceEEEEEEEEcCCC-CCcceEEECceee
Confidence            4   356899999999999999999999998876 5667899999986
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure