Citrus Sinensis ID: 047322

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340---
MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSATPVA
cccHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHHHHHHHccccccEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccccccccccEEEEEEEEEEEEEEccEEEccccccccccccccccccccEEEEEEEEccEEEEcEEEEccccEEEEEEcEEEEEEEEEEEEcccccccccEEEccccccEEEEEcEEEccccEEEEccccccEEEEEEEEcccccEEEcccEEEcccccccccEEEEEEEEEEEEccccEEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEcEEccccccccccccEEEEEEEEEEEEEEEccccc
ccHHHHHHHHHHHHHHccccccccEEEEHHcccccccccccHHHHHHHHHHHHcccccEEEEEcccEEEEEEEEEEccccccEEEEEEEEEEccccHHHccccccEEEEEEEcEEEEEEEEEccccccHccccccccccccccccEEEEccEEEEEEEEEEEccccccEEEEccEEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEcccccEEEEEEEEEccccccccEEEEcccccccccccEEEEEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccccEEEEccccccccccccccEEEEEEEEEEEEccccccccc
MAKLAVSCTLFIFFINTLFQSASAAYNVInfgakpdgksdATQAFLRAWSsacysnspatlhvprglFLVKsisfngpcrhrIVFQIdgtiiapssywslgnsGFWILFYKVNrlsihggtidatgAGYWacrksgkscppptrsisfvgasnivvsgltsinsrFFHIAIDECVNIMLRKLkinapswspntdgihiqsssgitisnsaimtgddcisvgpgtknlwieriacgpghgiRMKKALAALGPMLLKMVLKNvtvtdsiftgtqngvriktwarpsngfarniRFRNIImtkvfnpiiidqnycpdnhcphqtsgvtisgvtyrnikgtsatpva
MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTdsiftgtqngvriktwarpsngfarniRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTsgvtisgvtyrnikgtsatpva
MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSATPVA
***LAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNI*********
***LAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMK***********KMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSA****
MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWAC*********PTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSATPVA
*AKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKG*******
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSATPVA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query343 2.2.26 [Sep-21-2011]
P48979393 Polygalacturonase OS=Prun N/A no 0.959 0.837 0.519 6e-99
O22818405 Probable polygalacturonas no no 0.950 0.804 0.486 1e-84
O23147431 Polygalacturonase ADPG1 O no no 0.924 0.735 0.422 2e-67
Q6H9K0377 Exopolygalacturonase (Fra N/A no 0.921 0.838 0.393 8e-66
Q39766407 Polygalacturonase OS=Goss N/A no 0.967 0.815 0.397 1e-65
Q39786407 Polygalacturonase OS=Goss N/A no 0.967 0.815 0.397 2e-65
Q05967396 Polygalacturonase OS=Nico N/A no 0.970 0.840 0.376 1e-64
P35336467 Polygalacturonase OS=Acti N/A no 0.918 0.674 0.432 1e-63
Q8RY29433 Polygalacturonase ADPG2 O no no 0.906 0.718 0.427 5e-63
P35338410 Exopolygalacturonase OS=Z N/A no 0.918 0.768 0.383 5e-61
>sp|P48979|PGLR_PRUPE Polygalacturonase OS=Prunus persica PE=2 SV=1 Back     alignment and function desciption
 Score =  360 bits (925), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 175/337 (51%), Positives = 237/337 (70%), Gaps = 8/337 (2%)

Query: 10  LFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFL 69
           +F+F IN+   S    YNV + GAK DGK+D+T+AFL AW+ AC S +P  ++VP G F 
Sbjct: 13  IFVFMINSAIASP-LTYNVASLGAKADGKTDSTKAFLSAWAKACASMNPGVIYVPAGTFF 71

Query: 70  VKSISFNGPCRHR-IVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAG 128
           ++ + F+GPC++  I F+I GT++APS Y  +GN+  WI F+ VN ++I GG +D  G  
Sbjct: 72  LRDVVFSGPCKNNAITFRIAGTLVAPSDYRVIGNAANWIFFHHVNGVTISGGILDGQGTA 131

Query: 129 YWACRK-SGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAP 187
            WAC+   G+SCP    ++ F  ++NIVVSGL S+NS+ FHI I++  N+ ++ ++++  
Sbjct: 132 LWACKACHGESCPSGATTLGFSDSNNIVVSGLASLNSQMFHIVINDFQNVQMQGVRVSRS 191

Query: 188 SWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALA 247
             SPNTDGIH+Q SSG+TI NS I TGDDC+S+GPGT NLWIE +ACGPGHGI    ++ 
Sbjct: 192 GNSPNTDGIHVQMSSGVTILNSKIATGDDCVSIGPGTSNLWIEGVACGPGHGI----SIG 247

Query: 248 ALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIII 307
           +LG    +  ++NVTV    F+GTQNG+RIK+W RPS GFARNI F++  M  V NPI+I
Sbjct: 248 SLGKEQEEAGVQNVTVKTVTFSGTQNGLRIKSWGRPSTGFARNILFQHATMVNVENPIVI 307

Query: 308 DQNYCPDNH-CPHQTSGVTISGVTYRNIKGTSATPVA 343
           DQ+YCPDN  CP Q SGV IS VTY +I GTSAT VA
Sbjct: 308 DQHYCPDNKGCPGQVSGVQISDVTYEDIHGTSATEVA 344
Acts in concert with the pectinesterase, in the ripening process. Is involved in cell wall metabolism, specifically in polyuronide degradation.
Prunus persica (taxid: 3760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q6H9K0|PGLR2_PLAAC Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1 Back     alignment and function description
>sp|Q39766|PGLR_GOSBA Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q39786|PGLR_GOSHI Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1 Back     alignment and function description
>sp|Q05967|PGLR_TOBAC Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|Q8RY29|ADPG2_ARATH Polygalacturonase ADPG2 OS=Arabidopsis thaliana GN=ADPG2 PE=2 SV=2 Back     alignment and function description
>sp|P35338|PGLR2_MAIZE Exopolygalacturonase OS=Zea mays GN=PG9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
255576406390 Polygalacturonase precursor, putative [R 0.988 0.869 0.625 1e-128
255576404390 Polygalacturonase precursor, putative [R 0.988 0.869 0.630 1e-123
224117790391 predicted protein [Populus trichocarpa] 0.976 0.856 0.612 1e-121
224117798390 predicted protein [Populus trichocarpa] 0.988 0.869 0.582 1e-118
357450573391 Polygalacturonase [Medicago truncatula] 0.962 0.843 0.602 1e-115
297824383387 hypothetical protein ARALYDRAFT_903793 [ 0.962 0.852 0.572 1e-111
147783619389 hypothetical protein VITISV_035657 [Viti 0.985 0.868 0.579 1e-111
224092830390 predicted protein [Populus trichocarpa] 0.988 0.869 0.559 1e-111
15224383392 putative polygalacturonase /pectinase [A 0.962 0.841 0.573 1e-111
255576410388 Polygalacturonase precursor, putative [R 0.976 0.863 0.558 1e-111
>gi|255576406|ref|XP_002529095.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531446|gb|EEF33279.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 215/344 (62%), Positives = 281/344 (81%), Gaps = 5/344 (1%)

Query: 1   MAKLAVSCTLFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPAT 60
           M+K+ + C LF+ F ++ F  ++AAYNV++FGAKPDGKSD++QAF+RAW SAC S  PAT
Sbjct: 1   MSKIMIYCALFLIFFSSSFHESNAAYNVVSFGAKPDGKSDSSQAFVRAWLSACRSTGPAT 60

Query: 61  LHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGG 120
           ++VP+G FLVK + F+GPC+++I F IDG IIAP++YWS G SGFWILFYKV+R++IHGG
Sbjct: 61  VYVPKGSFLVKPVEFSGPCKNKISFWIDGKIIAPTNYWSFGTSGFWILFYKVSRVTIHGG 120

Query: 121 TIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLR 180
           T+DA GA +WAC+++GK CPP  RSISFVG+S++VVSGLTS+NS+ FHIAI +  NI+L+
Sbjct: 121 TLDARGASFWACKRAGKVCPPGARSISFVGSSDVVVSGLTSMNSQMFHIAIHKSHNIVLQ 180

Query: 181 KLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGI 240
           KLKI APS SPNTDG+H+QSS+GITI +S I TGDDCIS+GPG++N+WI+RIACGPGHGI
Sbjct: 181 KLKIIAPSLSPNTDGLHMQSSTGITIKDSTITTGDDCISLGPGSQNIWIQRIACGPGHGI 240

Query: 241 RMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTK 300
               ++ +L     +  ++NVTV + +FTGTQNGVRIK+W RPS  F +NI FR+I+M  
Sbjct: 241 ----SIGSLAQYKNEEGVQNVTVANVVFTGTQNGVRIKSWERPSTAFVKNILFRDIVMKN 296

Query: 301 VFNPIIIDQNYCPDNH-CPHQTSGVTISGVTYRNIKGTSATPVA 343
            +NPIIIDQ YCP+   CP+Q+SGV ISGVTY+NI+GTSA  VA
Sbjct: 297 TYNPIIIDQEYCPNGRGCPNQSSGVKISGVTYKNIRGTSAMRVA 340

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255576404|ref|XP_002529094.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531445|gb|EEF33278.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224117790|ref|XP_002331632.1| predicted protein [Populus trichocarpa] gi|222874028|gb|EEF11159.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117798|ref|XP_002331634.1| predicted protein [Populus trichocarpa] gi|222874030|gb|EEF11161.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357450573|ref|XP_003595563.1| Polygalacturonase [Medicago truncatula] gi|355484611|gb|AES65814.1| Polygalacturonase [Medicago truncatula] Back     alignment and taxonomy information
>gi|297824383|ref|XP_002880074.1| hypothetical protein ARALYDRAFT_903793 [Arabidopsis lyrata subsp. lyrata] gi|297325913|gb|EFH56333.1| hypothetical protein ARALYDRAFT_903793 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|147783619|emb|CAN68140.1| hypothetical protein VITISV_035657 [Vitis vinifera] gi|296084360|emb|CBI24748.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224092830|ref|XP_002309713.1| predicted protein [Populus trichocarpa] gi|222852616|gb|EEE90163.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15224383|ref|NP_181917.1| putative polygalacturonase /pectinase [Arabidopsis thaliana] gi|3212847|gb|AAC23398.1| putative polygalacturonase [Arabidopsis thaliana] gi|67633606|gb|AAY78727.1| putative polygalacturonase/pectinase [Arabidopsis thaliana] gi|330255247|gb|AEC10341.1| putative polygalacturonase /pectinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255576410|ref|XP_002529097.1| Polygalacturonase precursor, putative [Ricinus communis] gi|223531448|gb|EEF33281.1| Polygalacturonase precursor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query343
TAIR|locus:2043894394 AT2G43880 [Arabidopsis thalian 0.979 0.852 0.556 5.7e-107
TAIR|locus:2051764392 AT2G43890 [Arabidopsis thalian 0.962 0.841 0.573 5.1e-106
TAIR|locus:2031963394 AT1G05660 [Arabidopsis thalian 0.985 0.857 0.536 9.8e-103
TAIR|locus:2031953394 AT1G05650 [Arabidopsis thalian 0.985 0.857 0.530 4.9e-101
TAIR|locus:2043924384 AT2G43870 [Arabidopsis thalian 0.967 0.864 0.533 9.1e-100
TAIR|locus:2080422388 AT3G59850 [Arabidopsis thalian 0.967 0.855 0.516 1.3e-98
TAIR|locus:2043974405 AT2G43860 [Arabidopsis thalian 0.947 0.802 0.487 1.1e-80
TAIR|locus:2034131397 AT1G65570 [Arabidopsis thalian 0.927 0.801 0.450 2.7e-77
UNIPROTKB|Q6H9K0377 plaa2 "Exopolygalacturonase" [ 0.921 0.838 0.393 2.5e-65
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.921 0.733 0.420 8.8e-63
TAIR|locus:2043894 AT2G43880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 192/345 (55%), Positives = 258/345 (74%)

Query:     4 LAVSCTLFIFFINTLF--QSASA--AYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPA 59
             ++  C +  F IN  F  +S+ A  ++NV  +GA+ DG++DAT++FL AWS AC S + A
Sbjct:     5 ISFPCAIIFFSINIFFLIKSSHAMPSFNVQRYGARGDGRADATKSFLTAWSLACGSRARA 64

Query:    60 TLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHG 119
              ++VPRG +LVK++ F GPC++ I F+ DGT++AP++YW +GNSG+WILF KVNR+S++G
Sbjct:    65 MVYVPRGTYLVKNLVFWGPCKNIITFKNDGTLVAPANYWDIGNSGYWILFAKVNRISVYG 124

Query:   120 GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIML 179
             GTIDA GAGYW+CRK G  CP   RSISF   +N+++SGL+S NS+  H+ +    N+ +
Sbjct:   125 GTIDARGAGYWSCRKKGSHCPQGARSISFSWCNNVLLSGLSSFNSQNMHVTVHHSSNVRI 184

Query:   180 RKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHG 239
               ++I APS SPNTDGIH+QSSSG+TIS   I TGDDCI++  G++N+WIER+ CGPGHG
Sbjct:   185 ENVRIRAPSGSPNTDGIHVQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHG 244

Query:   240 IRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMT 299
             I    ++ +LG    +  ++NVTVT S+FT TQNGVRIKTWARPS GF  N+ FRN+IM 
Sbjct:   245 I----SIGSLGDYANEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVNNVVFRNLIMN 300

Query:   300 KVFNPIIIDQNYCPDNH-CPHQTSGVTISGVTYRNIKGTSATPVA 343
              V NP+IIDQNYCP+   CP Q+SGV ISGVT+ NIKGTS TP+A
Sbjct:   301 NVENPVIIDQNYCPNGKGCPRQSSGVKISGVTFANIKGTSTTPIA 345
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
TAIR|locus:2051764 AT2G43890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031963 AT1G05660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031953 AT1G05650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043924 AT2G43870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080422 AT3G59850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043974 AT2G43860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2034131 AT1G65570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H9K0 plaa2 "Exopolygalacturonase" [Platanus x acerifolia (taxid:140101)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P48979PGLR_PRUPE3, ., 2, ., 1, ., 1, 50.51920.95910.8371N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
PLN02155394 PLN02155, PLN02155, polygalacturonase 1e-134
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 2e-96
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 4e-84
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 2e-82
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 4e-82
PLN03003 456 PLN03003, PLN03003, Probable polygalacturonase At3 1e-68
PLN03010409 PLN03010, PLN03010, polygalacturonase 1e-68
COG5434 542 COG5434, PGU1, Endopygalactorunase [Cell envelope 6e-16
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 0.002
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information 
 Score =  387 bits (995), Expect = e-134
 Identities = 178/324 (54%), Positives = 246/324 (75%), Gaps = 5/324 (1%)

Query: 21  SASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCR 80
           SAS  +NV++FGAKPDG +D+T AFL+AW  AC S S AT+ VP G FL+K I+F GPC+
Sbjct: 23  SASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGPCK 82

Query: 81  HRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCP 140
            +I FQ+ GT++AP  Y + GNSG+WILF KVNR S+ GGT DA   G+W+CRKSG++CP
Sbjct: 83  SKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCP 142

Query: 141 PPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQS 200
           P  RSISF  A ++++SG+ S+NS+  H+ ++ C N+++R +K+ AP  SPNTDG H+Q 
Sbjct: 143 PGVRSISFNSAKDVIISGVKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQF 202

Query: 201 SSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKN 260
           S+G+T + S + TGDDC+++GPGT+N  I ++ACGPGHG+    ++ +L   L +  ++N
Sbjct: 203 STGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGV----SIGSLAKELNEDGVEN 258

Query: 261 VTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNH-CPH 319
           VTV+ S+FTG+QNGVRIK+WARPS GF RN+ F++++M  V NPIIIDQNYCP +  CP+
Sbjct: 259 VTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPN 318

Query: 320 QTSGVTISGVTYRNIKGTSATPVA 343
           + SGV IS VTY+NI+GTSAT  A
Sbjct: 319 EYSGVKISQVTYKNIQGTSATQEA 342

Length = 394
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 343
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02793443 Probable polygalacturonase 100.0
PLN03003 456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.9
PLN02793443 Probable polygalacturonase 99.87
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.85
PLN03003456 Probable polygalacturonase At3g15720 99.85
PLN02155394 polygalacturonase 99.84
PLN02218431 polygalacturonase ADPG 99.84
PLN03010409 polygalacturonase 99.81
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.81
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.76
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.72
COG5434 542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.48
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.14
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 99.08
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.81
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 98.77
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.73
TIGR03808 455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.73
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.64
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.62
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.57
smart00656190 Amb_all Amb_all domain. 98.56
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.55
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.52
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.49
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.47
PLN02497331 probable pectinesterase 98.45
PF14592 425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.36
PLN02480343 Probable pectinesterase 98.33
PRK10123 464 wcaM putative colanic acid biosynthesis protein; P 98.25
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 98.25
PLN02176340 putative pectinesterase 98.22
PLN02773317 pectinesterase 98.2
PLN02682369 pectinesterase family protein 98.16
PRK10531422 acyl-CoA thioesterase; Provisional 98.15
PLN02634359 probable pectinesterase 98.09
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 98.07
smart00656190 Amb_all Amb_all domain. 98.05
PLN02170529 probable pectinesterase/pectinesterase inhibitor 98.04
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.99
PLN02432293 putative pectinesterase 97.98
PLN02916502 pectinesterase family protein 97.96
PLN02665366 pectinesterase family protein 97.96
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.91
PLN02671359 pectinesterase 97.87
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.86
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.86
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.85
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.84
PLN02304379 probable pectinesterase 97.84
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.82
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.76
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.73
PLN02301548 pectinesterase/pectinesterase inhibitor 97.73
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.7
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.69
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.68
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.66
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.66
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 97.66
PLN02197588 pectinesterase 97.6
PLN02314586 pectinesterase 97.57
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 97.55
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 97.37
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.36
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.3
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.11
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.31
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.62
PLN02480343 Probable pectinesterase 95.23
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 95.12
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 94.5
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 94.23
PF01696 386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 91.95
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 90.89
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 90.61
PLN02217 670 probable pectinesterase/pectinesterase inhibitor 90.1
PLN02468565 putative pectinesterase/pectinesterase inhibitor 89.95
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 89.32
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 89.28
PLN02634359 probable pectinesterase 88.97
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 88.68
PLN02197588 pectinesterase 88.26
PRK10531422 acyl-CoA thioesterase; Provisional 88.2
>PLN02155 polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=6.6e-73  Score=532.34  Aligned_cols=337  Identities=54%  Similarity=1.019  Sum_probs=300.3

Q ss_pred             CchhhHHHHHHH-HHhh-hccccCCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEeEEecCC
Q 047322            1 MAKLAVSCTLFI-FFIN-TLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGP   78 (343)
Q Consensus         1 m~~~~~~~~~~~-~~~~-~~~~~~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~l~l~~~   78 (343)
                      |.|..+.+.|++ +|.. ..+..++.+|||+||||+|||.+|||+|||+||++||++.+|++|+||+|+|++++|.|.||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~yGA~gDG~td~t~Ai~~Ai~~aC~~~gGg~v~vP~G~yl~g~i~l~gp   80 (394)
T PLN02155          1 MTKSAITFPLLFTLLTFIDVSSSASNVFNVVSFGAKPDGVTDSTAAFLKAWQGACGSASSATVVVPTGTFLLKVITFGGP   80 (394)
T ss_pred             CccceeehhHHHHHHHHhhccccCCcEEEhhhcCcCCCCccccHHHHHHHHHHHcccCCCeEEEECCCcEEEEEEEEccc
Confidence            677654333322 2222 22233367999999999999999999999999987899889999999999999999999999


Q ss_pred             CcccEEEEEeeEEEecCCcCCcCCCcceEEEEeeeeEEEEcceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEe
Q 047322           79 CRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSG  158 (343)
Q Consensus        79 ~ks~~~l~~~g~l~~~~~~~~~~~~~~~i~~~~~~ni~I~GG~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~  158 (343)
                      |||+++|+++|+|+++.++..|.....|+.+.+.+++.|.||+|||+|+.||.....+..++.+|+++.|.+|++++|++
T Consensus        81 cksnv~l~l~G~l~~~~d~~~~~~~~~wi~~~~~~~i~i~GG~iDGqG~~ww~~~~~~~~~~~~p~~i~~~~~~nv~i~g  160 (394)
T PLN02155         81 CKSKITFQVAGTVVAPEDYRTFGNSGYWILFNKVNRFSLVGGTFDARANGFWSCRKSGQNCPPGVRSISFNSAKDVIISG  160 (394)
T ss_pred             CCCCceEEEeeEEECccccccccccceeEEEECcCCCEEEccEEecCceeEEEcccCCCCCCCcccceeEEEeeeEEEEC
Confidence            99999999999999988887776556799999999999999999999999998765544556678899999999999999


Q ss_pred             eEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCc
Q 047322          159 LTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGH  238 (343)
Q Consensus       159 v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~  238 (343)
                      ++++|+|.|++++..|++|+|++++|.++.+++|+|||++.+|+||+|+||+|.++||||+++++++||+|+||+|..+|
T Consensus       161 itl~nSp~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~Gh  240 (394)
T PLN02155        161 VKSMNSQVSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGH  240 (394)
T ss_pred             eEEEcCCCeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCc
Confidence            99999999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             eEEEeecccCcCcccccCcEEEEEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCCC-C
Q 047322          239 GIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNH-C  317 (343)
Q Consensus       239 gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~-~  317 (343)
                      |++|    ||+|++.+.+.++||+|+||+|.++.+|++||+|.+.++|.|+||+|+||+|+++++||.|++.|++... |
T Consensus       241 GisI----GS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~  316 (394)
T PLN02155        241 GVSI----GSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGC  316 (394)
T ss_pred             eEEe----ccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCC
Confidence            9999    9999876577899999999999999999999998654689999999999999999999999999987544 7


Q ss_pred             CCCCCceEEEeEEEEeEEEEecCC
Q 047322          318 PHQTSGVTISGVTYRNIKGTSATP  341 (343)
Q Consensus       318 ~~~~~~~~i~~I~~~ni~~~~~~~  341 (343)
                      +.+.+.+.|+||+|+||++|.++.
T Consensus       317 ~~~~s~v~i~~It~~ni~gt~~~~  340 (394)
T PLN02155        317 PNEYSGVKISQVTYKNIQGTSATQ  340 (394)
T ss_pred             cCCCCCeEEEEEEEEeeEEEecCC
Confidence            655667899999999999998754

>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 8e-16
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 3e-13
1nhc_A336 Structural Insights Into The Processivity Of Endopo 7e-13
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 3e-11
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 4e-11
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 3e-10
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-08
1k5c_A335 Endopolygalacturonase I From Stereum Purpureum At 0 1e-06
1rmg_A 422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 2e-05
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 4e-05
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 80.9 bits (198), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 124/290 (42%), Gaps = 43/290 (14%)
Query: 46  LRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSG- 104
           L A S++ + + P +L     L + K ++       R V        APSS   +  +G 
Sbjct: 44  LSAGSTSVFLSGPLSLPSGVSLLIDKGVTL------RAVNNAKSFENAPSSCGVVDKNGK 97
Query: 105 ---FWILFYKVNRLSIHG-GTIDATGA--------GYWA------CRKSGKSCPPPTRSI 146
               +I         I+G GTID  G          +W        +K  ++ P   R I
Sbjct: 98  GCDAFITAVSTTNSGIYGPGTIDGQGGVKLQDKKVSWWELAADAKVKKLKQNTP---RLI 154
Query: 147 SFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITI 206
               + N  +  ++ INS  FH+   +       K  I  PS + NTDGI   SS  ITI
Sbjct: 155 QINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITI 214
Query: 207 SNSAIMTGDDCISVG-----PGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKNV 261
           + S I TGDD +++        T+N+ I     G GHG+ +             M + NV
Sbjct: 215 AYSNIATGDDNVAIKAYKGRAETRNISILHNDFGTGHGMSIGSET---------MGVYNV 265
Query: 262 TVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNY 311
           TV D    GT NG+RIK+  + + G    +R+ N++M  V  PI+ID  Y
Sbjct: 266 TVDDLKMNGTTNGLRIKS-DKSAAGVVNGVRYSNVVMKNVAKPIVIDTVY 314
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1K5C|A Chain A, Endopolygalacturonase I From Stereum Purpureum At 0.96 A Resolution Length = 335 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query343
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 5e-99
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 2e-95
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-87
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 9e-85
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 2e-82
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 5e-82
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-81
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 2e-80
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 3e-71
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-33
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 5e-33
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 1e-30
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 4e-21
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-15
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 1e-10
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-09
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 4e-08
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 6e-05
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
 Score =  295 bits (758), Expect = 5e-99
 Identities = 76/340 (22%), Positives = 132/340 (38%), Gaps = 25/340 (7%)

Query: 10  LFIFFINTLFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFL 69
            F   +      A A +   +     D  +  T A  +A  + C + +   + VP G   
Sbjct: 3   SFASLLAYGL-VAGATFASASPIEARDSCTFTTAAAAKAGKAKCSTITLNNIEVPAG--- 58

Query: 70  VKSISFNGPCRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGY 129
             ++   G          +GT       W+       +    +      G  I+  GA +
Sbjct: 59  -TTLDLTGLTSG-TKVIFEGTTTFQYEEWA--GPLISMSGEHITVTGASGHLINCDGARW 114

Query: 130 WAC-RKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPS 188
           W     SGK  P         G  +  ++GL   N+     ++    +I    + IN   
Sbjct: 115 WDGKGTSGKKKPK---FFYAHGLDSSSITGLNIKNTPLMAFSVQ-ANDITFTDVTINNAD 170

Query: 189 ----WSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKK 244
                  NTD   + +S G+ I    +   DDC++V  G  N+W     C  GHG+    
Sbjct: 171 GDTQGGHNTDAFDVGNSVGVNIIKPWVHNQDDCLAVNSGE-NIWFTGGTCIGGHGL---- 225

Query: 245 ALAALGPMLLKMVLKNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFN- 303
           ++ ++G     +V KNVT+  S  + ++N VRIKT    + G    I + NI+M+ + + 
Sbjct: 226 SIGSVGDRSNNVV-KNVTIEHSTVSNSENAVRIKTI-SGATGSVSEITYSNIVMSGISDY 283

Query: 304 PIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSATPVA 343
            ++I Q+Y         T+GVTI  V   ++ G+  +   
Sbjct: 284 GVVIQQDYEDGKPTGKPTNGVTIQDVKLESVTGSVDSGAT 323
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1rmg_A 422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.97
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.97
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.92
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.86
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.86
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.85
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.85
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.84
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.84
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.83
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.79
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.78
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.76
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.75
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.7
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.45
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.38
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 99.37
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.3
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.29
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.28
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.22
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.18
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.86
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.82
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.73
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.72
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.69
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.68
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.68
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.65
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.62
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.59
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.58
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.57
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.56
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.56
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.53
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.37
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.35
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.31
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 98.26
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.2
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 98.17
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.16
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.92
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.79
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.78
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.61
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.5
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.47
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.07
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.04
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.83
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 96.59
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 96.46
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 96.22
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 96.02
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 95.84
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 95.47
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 95.35
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.93
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 93.88
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 92.86
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 87.05
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 84.91
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=6.1e-61  Score=461.40  Aligned_cols=301  Identities=24%  Similarity=0.394  Sum_probs=267.4

Q ss_pred             ccccCCceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEeEEecCCCcccEEEEEeeEEEecCCc
Q 047322           18 LFQSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKSISFNGPCRHRIVFQIDGTIIAPSSY   97 (343)
Q Consensus        18 ~~~~~~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~l~l~~~~ks~~~l~~~g~l~~~~~~   97 (343)
                      .+..++.+++|+||||+|||.+|||+|||+||+ +|++.++++|+||+|+|++++|.|    ||+++|+++|+|+++.++
T Consensus        20 ~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~-~c~~~ggg~v~vP~G~yl~~~l~l----~s~v~l~l~gtL~~s~d~   94 (448)
T 3jur_A           20 EPQIPDREVNLLDFGARGDGRTDCSESFKRAIE-ELSKQGGGRLIVPEGVFLTGPIHL----KSNIELHVKGTIKFIPDP   94 (448)
T ss_dssp             CCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHH-HHHHHTCEEEEECSSEEEESCEEC----CTTEEEEESSEEEECCCG
T ss_pred             CCCCCCcEEEEEecccCCCCCeecHHHHHHHHH-hhhhcCCeEEEECCCcEEEeeeEe----CCCcEEEEEEEEEecCCH
Confidence            344457799999999999999999999999997 566667899999999999999999    799999999999999998


Q ss_pred             CCc-CC------------CcceEEEEeeeeEEEEc-ceEeCCC--CccccccCC--------------------------
Q 047322           98 WSL-GN------------SGFWILFYKVNRLSIHG-GTIDATG--AGYWACRKS--------------------------  135 (343)
Q Consensus        98 ~~~-~~------------~~~~i~~~~~~ni~I~G-G~idg~g--~~~w~~~~~--------------------------  135 (343)
                      .+| +.            ..+||.+.+.+||+|+| |+|||+|  +.||+....                          
T Consensus        95 ~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  174 (448)
T 3jur_A           95 ERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERG  174 (448)
T ss_dssp             GGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHHHHT
T ss_pred             HHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhhhhhccc
Confidence            888 32            14689999999999999 9999999  889974321                          


Q ss_pred             --------CCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEEeEEEECCCCCCCCCeeeeeCcccEEEE
Q 047322          136 --------GKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHIQSSSGITIS  207 (343)
Q Consensus       136 --------~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~~~~i~~~~~~~~~DGi~~~~s~nv~I~  207 (343)
                              +.....||++|.|.+|+|++|++++++|+|.|++++..|++++|++++|.++  ++++|||++.+|+||+|+
T Consensus       175 ~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV~I~  252 (448)
T 3jur_A          175 TPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYMLIE  252 (448)
T ss_dssp             CCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEEEEE
T ss_pred             CcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCEEEE
Confidence                    0123468999999999999999999999999999999999999999999987  589999999999999999


Q ss_pred             ccEEecCCceEEeCCC-----------ceeEEEEeeEE--cCCc-eEEEeecccCcCcccccCcEEEEEEEceEEeCCce
Q 047322          208 NSAIMTGDDCISVGPG-----------TKNLWIERIAC--GPGH-GIRMKKALAALGPMLLKMVLKNVTVTDSIFTGTQN  273 (343)
Q Consensus       208 n~~i~~~dD~i~i~~~-----------~~ni~i~n~~~--~~~~-gi~i~~~~gs~g~~~~~~~~~ni~i~n~~~~~~~~  273 (343)
                      ||+|.++||||+++++           ++||+|+||+|  ..+| |++|    ||++    .+.++||+|+||+|.++.+
T Consensus       253 n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisi----GS~~----~~~v~nV~v~n~~~~~t~~  324 (448)
T 3jur_A          253 KCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVI----GSEM----SGGVRNVVARNNVYMNVER  324 (448)
T ss_dssp             SCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEE----CSSC----TTCEEEEEEESCEEESCSE
T ss_pred             eeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEE----CCcc----cCcEEEEEEEEEEEecccc
Confidence            9999999999999997           89999999999  6677 8999    9974    4579999999999999999


Q ss_pred             EEEEEeecCCCCceEEeEEEEeEEEecCCeeE-EEEeeeCCCCCCCCCCCceEEEeEEEEeEEEEe
Q 047322          274 GVRIKTWARPSNGFARNIRFRNIIMTKVFNPI-IIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTS  338 (343)
Q Consensus       274 gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~i~~I~~~ni~~~~  338 (343)
                      |++||++.+ ++|.++||+|+||+|+++.+|+ .|++.|+..  +  ....+.|+||+|+||+++.
T Consensus       325 GirIKt~~g-~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~--~--~~~~~~i~nI~~~NI~~t~  385 (448)
T 3jur_A          325 ALRLKTNSR-RGGYMENIFFIDNVAVNVSEEVIRINLRYDNE--E--GEYLPVVRSVFVKNLKATG  385 (448)
T ss_dssp             EEEEECCTT-TCSEEEEEEEESCEEEEESSEEEEEESCGGGC--C--CSCCCEEEEEEEESCEEEE
T ss_pred             eEEEEEEcC-CCceEeeEEEEEEEEECCccccEEEEeeccCC--C--CCCCceEEEEEEEeEEEEe
Confidence            999999876 6799999999999999999988 999988753  2  1234589999999999987
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 343
d1rmga_ 422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-64
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 4e-64
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-63
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-56
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-50
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-50
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 8e-50
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 3e-41
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  207 bits (529), Expect = 2e-64
 Identities = 63/325 (19%), Positives = 120/325 (36%), Gaps = 26/325 (8%)

Query: 20  QSASAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKS-ISFNGP 78
           + A+   N++++GA  D  +D   A   AW +AC   S   +++P G + + + ++  G 
Sbjct: 15  KGATKTCNILSYGAVADNSTDVGPAITSAW-AAC--KSGGLVYIPSGNYALNTWVTLTGG 71

Query: 79  CRHRIVFQIDGTIIAPSSYWSLGNSGFWILFYKVNRLSIHGGTIDATGAGYWACRKSGKS 138
                  Q+DG I     Y +   SG  I         +   T      G+     +  +
Sbjct: 72  S--ATAIQLDGII-----YRTGTASGNMIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGT 124

Query: 139 CPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLRKLKINAPSWSPNTDGIHI 198
                R +     ++  V  +  +++  FH  +D C +  +  + I         DGI +
Sbjct: 125 YGA--RILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLDGIDV 181

Query: 199 QSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVL 258
             S+ I + +  +   D+C++V     N+ +E I C    G  M    A          +
Sbjct: 182 WGSN-IWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD-------V 233

Query: 259 KNVTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCP 318
            ++   +     +     IK+     +G   N+   N I       + ID  +       
Sbjct: 234 TDIVYRNVYTWSSNQMYMIKSN--GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAVA 291

Query: 319 HQTSGVTISGVTYRNIKGTSATPVA 343
               GV ++ +T +N KGT A    
Sbjct: 292 --GDGVQLNNITVKNWKGTEANGAT 314
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query343
d1rmga_ 422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.86
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.84
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.83
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.82
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.81
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.73
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.72
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.64
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.63
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.81
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 98.66
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.56
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.55
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.39
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 98.34
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.18
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 98.01
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.89
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.78
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.7
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.64
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.5
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.2
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 96.92
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.37
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 96.2
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 95.49
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 94.18
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 93.8
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 82.12
d1tywa_ 554 P22 tailspike protein {Salmonella phage P22 [TaxId 80.63
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=5.2e-56  Score=423.27  Aligned_cols=292  Identities=21%  Similarity=0.342  Sum_probs=252.0

Q ss_pred             CceEEEeecCccCCCCcchHHHHHHHHHHhhhcCCCcEEEEcCcEEEEEe-EEecCCCcccEEEEEeeEEEecCCcCCcC
Q 047322           23 SAAYNVINFGAKPDGKSDATQAFLRAWSSACYSNSPATLHVPRGLFLVKS-ISFNGPCRHRIVFQIDGTIIAPSSYWSLG  101 (343)
Q Consensus        23 ~~~~~v~d~GA~gdg~tDdt~Aiq~Ai~~a~~~~~g~~V~ip~G~Y~~~~-l~l~~~~ks~~~l~~~g~l~~~~~~~~~~  101 (343)
                      .++|||+||||+|||.+|||+|||+||+ ||+  +|++|+||+|+|++.+ +.|.++  +++.|+++|+|+++.....+.
T Consensus        18 ~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~--~gg~V~iP~Gty~l~~~i~l~g~--~~~~l~~~G~i~~~~~~~~~~   92 (422)
T d1rmga_          18 TKTCNILSYGAVADNSTDVGPAITSAWA-ACK--SGGLVYIPSGNYALNTWVTLTGG--SATAIQLDGIIYRTGTASGNM   92 (422)
T ss_dssp             HCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHT--BTCEEEECSSEEEECSCEEEESC--EEEEEEECSEEEECCCCSSEE
T ss_pred             CcEEEEecCCCCCCCCccCHHHHHHHHH-hcC--CCCEEEECCCcEEEeCcEEEcCC--CceEEEEeEEEEeccCCccCE
Confidence            5699999999999999999999999995 675  4679999999998775 888875  788999999998865543221


Q ss_pred             CCcceEEEEeeeeEEEEc-ceEeCCCCccccccCCCCCCCCCceEEEEEecCcEEEEeeEEecCCccEEEEeceecEEEE
Q 047322          102 NSGFWILFYKVNRLSIHG-GTIDATGAGYWACRKSGKSCPPPTRSISFVGASNIVVSGLTSINSRFFHIAIDECVNIMLR  180 (343)
Q Consensus       102 ~~~~~i~~~~~~ni~I~G-G~idg~g~~~w~~~~~~~~~~~~~~~i~~~~~~nv~i~~v~i~n~~~~~i~~~~~~~v~i~  180 (343)
                        ..+....+.+.+++.| |+|||+|..||...      ..+|.++.|.+|+|++|++++++|++.|++.+..|++++++
T Consensus        93 --~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~------~~~p~~l~~~~~~n~~i~git~~nsp~~~i~i~~c~~v~i~  164 (422)
T d1rmga_          93 --IAVTDTTDFELFSSTSKGAVQGFGYVYHAEG------TYGARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVY  164 (422)
T ss_dssp             --EEEEEEEEEEEECSSSCCEEECCTHHHHTTT------CCCCEEEEEEEEEEEEEEEEEEECCSSCSEEEEEEEEEEEE
T ss_pred             --EEeccCccEEEEEeecceEEecCcceecCCC------CCCCcEEEEEeeeeeEEECcEecCCCceEEEEeccccEEEE
Confidence              1222333445566677 99999999999633      34789999999999999999999999999999999999999


Q ss_pred             eEEEECCCCCCCCCeeeeeCcccEEEEccEEecCCceEEeCCCceeEEEEeeEEcCCceEEEeecccCcCcccccCcEEE
Q 047322          181 KLKINAPSWSPNTDGIHIQSSSGITISNSAIMTGDDCISVGPGTKNLWIERIACGPGHGIRMKKALAALGPMLLKMVLKN  260 (343)
Q Consensus       181 ~~~i~~~~~~~~~DGi~~~~s~nv~I~n~~i~~~dD~i~i~~~~~ni~i~n~~~~~~~gi~i~~~~gs~g~~~~~~~~~n  260 (343)
                      |++|..+. .+++|||++.+ +||+|+||++.++||||+++++++||+|+|++|..+||+++    |++|.+   ..++|
T Consensus       165 nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~Gisi----Gs~g~~---~~V~n  235 (422)
T d1rmga_         165 NMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAM----GSLGAD---TDVTD  235 (422)
T ss_dssp             EEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEE----EEECTT---EEEEE
T ss_pred             eeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeE----eeccCC---CCEEE
Confidence            99999864 57999999976 58999999999999999999999999999999999999999    998753   46999


Q ss_pred             EEEEceEEeCCceEEEEEeecCCCCceEEeEEEEeEEEecCCeeEEEEeeeCCCCCCCCCCCceEEEeEEEEeEEEEecC
Q 047322          261 VTVTDSIFTGTQNGVRIKTWARPSNGFARNIRFRNIIMTKVFNPIIIDQNYCPDNHCPHQTSGVTISGVTYRNIKGTSAT  340 (343)
Q Consensus       261 i~i~n~~~~~~~~gi~i~~~~~~~~g~i~nI~~~ni~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~I~~~ni~~~~~~  340 (343)
                      |+|+||++.++.+++++|++.+  .|.|+||+|+||+++++.+||.|++.|+....+  +...+.|+||+|+||+||..+
T Consensus       236 V~v~n~~~~~s~~g~~ik~~~g--~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~~--~~~~v~isnIt~~Ni~GT~~~  311 (422)
T d1rmga_         236 IVYRNVYTWSSNQMYMIKSNGG--SGTVSNVLLENFIGHGNAYSLDIDGYWSSMTAV--AGDGVQLNNITVKNWKGTEAN  311 (422)
T ss_dssp             EEEEEEEEESSSCSEEEEEBBC--CEEEEEEEEEEEEEEEESCSEEEETBCTTSCCB--SSSCCEEEEEEEEEEEEEESC
T ss_pred             EEEEeEEEeCCCceEEEEEcCC--CceecceEEEEEEEecccccEEEecccCCCCCC--CCCCeEEEEEEEEeEEEEecC
Confidence            9999999999999999998743  689999999999999999999999999865443  235678999999999999854
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1tywa_ b.80.1.6 (A:) P22 tailspike protein {Salmonella phage P22 [TaxId: 10754]} Back     information, alignment and structure