Citrus Sinensis ID: 047341
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | 2.2.26 [Sep-21-2011] | |||||||
| Q58FX0 | 207 | BON1-associated protein 2 | no | no | 0.5 | 0.613 | 0.294 | 1e-06 |
| >sp|Q58FX0|BAP2_ARATH BON1-associated protein 2 OS=Arabidopsis thaliana GN=BAP2 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPE 65
LEI +ISA+GLK +++ +TY++V ID + ++VD G PIW ++F ++
Sbjct: 10 LEIEVISAEGLKVDRKPLKK-KTYSVVRIDEKS-WASKVDELGGSYPIWKDRFDMEMP-- 65
Query: 66 FLSSETSAISVEIY--ASGYLRDYLIGTVRFLVSNISLSVATKTP-SFTAFQIRRPSGRF 122
+++ IS+E+Y SG RD +G + V++ A + +F ++++R G
Sbjct: 66 -INASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAPQGHLNFLSYRLRDEYGDK 124
Query: 123 QGVLSIGSML-IDGSD 137
G++++ M+ DG+D
Sbjct: 125 CGIVNVSIMVKPDGND 140
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Negative regulator of cell death and defense responses. Exhibits calcium-dependent phospholipid binding properties. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | ||||||
| 255541764 | 265 | conserved hypothetical protein [Ricinus | 0.921 | 0.883 | 0.564 | 5e-60 | |
| 15234097 | 250 | calcium-dependent lipid-binding domain-c | 0.944 | 0.96 | 0.505 | 5e-58 | |
| 356571218 | 260 | PREDICTED: uncharacterized protein LOC10 | 0.960 | 0.938 | 0.494 | 2e-57 | |
| 225454414 | 265 | PREDICTED: uncharacterized protein LOC10 | 0.980 | 0.939 | 0.519 | 3e-57 | |
| 224064119 | 310 | predicted protein [Populus trichocarpa] | 0.925 | 0.758 | 0.579 | 5e-57 | |
| 297810041 | 256 | C2 domain-containing protein [Arabidopsi | 0.905 | 0.898 | 0.506 | 2e-56 | |
| 357512471 | 284 | hypothetical protein MTR_7g116840 [Medic | 0.917 | 0.820 | 0.530 | 2e-55 | |
| 356504149 | 238 | PREDICTED: BON1-associated protein 2-lik | 0.866 | 0.924 | 0.489 | 1e-54 | |
| 147867306 | 380 | hypothetical protein VITISV_040896 [Viti | 0.976 | 0.652 | 0.490 | 2e-51 | |
| 449432070 | 279 | PREDICTED: uncharacterized protein LOC10 | 0.921 | 0.838 | 0.452 | 1e-45 |
| >gi|255541764|ref|XP_002511946.1| conserved hypothetical protein [Ricinus communis] gi|223549126|gb|EEF50615.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/248 (56%), Positives = 171/248 (68%), Gaps = 14/248 (5%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKV 62
T+ILEI LISAQ LK PS+ +R+MQTYA+VW+DS+ KL TR+DR G E+P WN+KFLFKV
Sbjct: 4 TKILEINLISAQDLKPPSASLRQMQTYAVVWLDSTAKLRTRIDRVGGENPTWNDKFLFKV 63
Query: 63 TPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLS---VATKTPSFTAFQIRRPS 119
TPE LS ETS +S EIYA G RD LIGTVRFL+S I L T+TPS A QI+RPS
Sbjct: 64 TPEILSRETSGVSFEIYAVGCFRDPLIGTVRFLISTIPLPSPIKPTRTPSCIALQIQRPS 123
Query: 120 GRFQGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGESKRKESLMTRKSKSMADEFDAGDD 179
GRFQGVL+IG+M+IDGSD + SAIGYRDLMGE +R+ R K + G+
Sbjct: 124 GRFQGVLNIGAMVIDGSDFATLNGASAIGYRDLMGEKQRRRRRPPRDLKKSVSMEEVGNA 183
Query: 180 ESWENSSCAES--LCSDGAD-STTSSSSTTSTVLKEWNGSLNCLARINRLRSASE--SML 234
E +SC ES L SDGAD +T+SSSS ST LK+WN N N LRS+S+
Sbjct: 184 E----NSCGESGDLSSDGADSTTSSSSSAASTALKDWNSVRNLAG--NHLRSSSDGGGFF 237
Query: 235 CGLLMERK 242
CGL+ +R+
Sbjct: 238 CGLMKQRR 245
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15234097|ref|NP_192029.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|7267617|emb|CAB80929.1| hypothetical protein [Arabidopsis thaliana] gi|19424081|gb|AAL87353.1| unknown protein [Arabidopsis thaliana] gi|21281235|gb|AAM45098.1| unknown protein [Arabidopsis thaliana] gi|332656593|gb|AEE81993.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 130/257 (50%), Positives = 172/257 (66%), Gaps = 17/257 (6%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKV 62
TQ+LEI LISAQGLK P+ K+RR+QTYA VW+DSS+KL TR+DR G+E+PIWN+KF+F+V
Sbjct: 4 TQVLEINLISAQGLKEPTGKLRRLQTYASVWVDSSSKLRTRIDRIGSENPIWNDKFVFQV 63
Query: 63 TPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF 122
+PEFLSSETS +S+EIYA GYLRD+LIGTVRFLVSN + A K PS A QIRRPSG+F
Sbjct: 64 SPEFLSSETSGVSIEIYAVGYLRDHLIGTVRFLVSNFLPTAAVKVPSLVALQIRRPSGKF 123
Query: 123 QGVLSIGSMLIDGSDLPA--FDEVSAIGYRDLMGESKRKESLMTRKSKSMADEFDAGDDE 180
GVL+I +M++D S+LPA F V I + ++ +R + S ++ A D E
Sbjct: 124 HGVLNIAAMVMDASELPADFFKSVQEI--------RRSRKMRKSRSAVSSSENGSADDGE 175
Query: 181 -SWENSSCAE-SLCSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLRSASE--SMLCG 236
S ENS C + DG DST +SS + L++WN N LA N +RS+S+ ++C
Sbjct: 176 SSKENSVCGSVNFSDDGTDST--ASSPMPSPLRDWNAVRN-LAGKNHVRSSSDGGGLMCC 232
Query: 237 LLMERKNRSKPSDENVD 253
LM+ P + D
Sbjct: 233 FLMKSSGMLPPRRKMTD 249
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571218|ref|XP_003553776.1| PREDICTED: uncharacterized protein LOC100793541 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 127/257 (49%), Positives = 171/257 (66%), Gaps = 13/257 (5%)
Query: 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVT 63
Q+LEI LISAQGLK PSS RR+QTYA+ WID +TKL TRVD+ G +P WN+KFLF+VT
Sbjct: 9 QVLEINLISAQGLKPPSSPRRRLQTYAVTWIDPATKLRTRVDKLGGHNPTWNDKFLFRVT 68
Query: 64 PEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNI-SLSVATKTPSFTAFQIRRPSGRF 122
P+FL+ +TS++ V IYA G RD+L+GTVRFL+SN+ S TP F+AFQIRRPSGRF
Sbjct: 69 PDFLAGDTSSVCVAIYAVGTFRDHLVGTVRFLISNMFSPDADYATPCFSAFQIRRPSGRF 128
Query: 123 QGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGES----KRKESLMTRKSKSMADEFDAGD 178
GV++IG+M++D S PA +++SAIGYRDLMGE +RK K + +
Sbjct: 129 HGVMNIGAMVMDSSGFPALEKISAIGYRDLMGEKIHQRRRKTPEEKSKETKEEEVLSS-- 186
Query: 179 DESWENSSCAESLCSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLRSASESMLCGLL 238
ESWEN SC E + + +++SSS T T LK+WNG + LA L ++ LC L+
Sbjct: 187 -ESWEN-SCTEEGEGESSTASSSSSPRT-TALKDWNG-VKELAGNKGLAMSASGFLCCLV 242
Query: 239 MERKNRSK--PSDENVD 253
+R + P++ V+
Sbjct: 243 TQRSVHQQLTPTNHTVE 259
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225454414|ref|XP_002276427.1| PREDICTED: uncharacterized protein LOC100258448 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/262 (51%), Positives = 183/262 (69%), Gaps = 13/262 (4%)
Query: 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLF 60
M TQ+LEIILISAQGLK PS +RRMQTYA+ WIDS+ KL T+VDR GAE+P WN+KF+F
Sbjct: 1 METQLLEIILISAQGLKPPSGNLRRMQTYAIAWIDSANKLRTQVDRVGAENPTWNDKFIF 60
Query: 61 KVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNI-------SLSVATKTPSFTAF 113
+V+ +FL+ +TSA++VEIYA G +RD+LIGTVR L+SN S + A ++PS TA
Sbjct: 61 RVSSDFLACDTSAVAVEIYAVGVIRDHLIGTVRILISNCLPAADLRSRNFAARSPSLTAV 120
Query: 114 QIRRPSGRFQGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGESKRKESLMTRKSKSMADE 173
QIRRPSGRF GVL++ + +++ SD + + AI +RDLMG+S R+ R++ + +++
Sbjct: 121 QIRRPSGRFHGVLNVAAAVVNASDFASLTGMLAIDHRDLMGQSLRRRRGHRRRT-AKSEQ 179
Query: 174 FDAGDDESWENSSCAESL-CSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLRSASES 232
G ES ++ SCA+S SDGADSTTSSSST STVLK+ N L +A +S
Sbjct: 180 LSGG--ESCDH-SCADSADYSDGADSTTSSSSTASTVLKDCN-ILREMAGTKAFKSDDGG 235
Query: 233 MLCGLLMERKNRSKPSDENVDV 254
+LCGL +RK PSD+N V
Sbjct: 236 VLCGLGFQRKIHLSPSDQNFQV 257
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064119|ref|XP_002301388.1| predicted protein [Populus trichocarpa] gi|222843114|gb|EEE80661.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 227 bits (578), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 146/252 (57%), Positives = 178/252 (70%), Gaps = 17/252 (6%)
Query: 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLF 60
M ++LEI LISAQGLK PS+ +RRMQTYA+VWID STKL TR DR G+E+P WN+KFLF
Sbjct: 1 MEMKVLEINLISAQGLKPPSANLRRMQTYAIVWIDPSTKLRTRTDRVGSENPTWNDKFLF 60
Query: 61 KVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISL---SVATKTPSFTAFQIRR 117
KVTPE+LSSETS +S+EIYA G +RD LIGTVRFLV N+ L S A PS A QIRR
Sbjct: 61 KVTPEYLSSETSGVSIEIYAIGCIRDALIGTVRFLVGNLRLSTPSAAITMPSCIALQIRR 120
Query: 118 PSGRFQGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGES-KRKESLMTRKSKSMADEFDA 176
PSGRF GV++IG+ +IDGSD A SAIG+RDLMGES +R+ R +KS
Sbjct: 121 PSGRFHGVINIGANVIDGSDFWALHGASAIGFRDLMGESIRRRRKERQRDTKS-----SV 175
Query: 177 GDDESWENSSCAESL-CSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLRSASESMLC 235
G+D N SC ES SDG DSTTSSSST STVLK+WN + A N +RS+S+
Sbjct: 176 GED---VNHSCGESGDLSDGTDSTTSSSSTASTVLKDWN-RVGDFAGTNLVRSSSDG--- 228
Query: 236 GLLMERKNRSKP 247
G +++ ++R KP
Sbjct: 229 GDILQGESRQKP 240
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297810041|ref|XP_002872904.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318741|gb|EFH49163.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 164/241 (68%), Gaps = 11/241 (4%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKV 62
T +LEI LISAQGLK P+ K+RR+QTYA VW+DSS KL TR+DR G+E+PIWN+KF+F+V
Sbjct: 4 THVLEINLISAQGLKEPTGKLRRLQTYASVWVDSSNKLRTRIDRIGSENPIWNDKFVFQV 63
Query: 63 TPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF 122
+PEFLSSETS +S+EIYA GYLRD+ IGTVRFLVSN + A K PS A QIRRPSG+F
Sbjct: 64 SPEFLSSETSGVSIEIYAVGYLRDHQIGTVRFLVSNFLPTAAVKVPSLVALQIRRPSGKF 123
Query: 123 QGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGESKRKESLMTRKSKSMADEFDAGDDESW 182
GVL+I +M++D S+LPA D ++ ++ S ++ AD+ + S
Sbjct: 124 HGVLNIAAMVMDASELPA-DFFKSVQETRRSRRMRKSRSAVSSSENGFADD----GESSK 178
Query: 183 ENSSC-AESLCSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLRSASE--SMLCGLLM 239
ENS C + + DG DST +SS + L++WN N LA N +RS+S+ ++C LM
Sbjct: 179 ENSVCDSVNYSDDGTDST--ASSPMPSPLRDWNAVRN-LAGKNHVRSSSDGGGLMCCFLM 235
Query: 240 E 240
+
Sbjct: 236 K 236
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Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357512471|ref|XP_003626524.1| hypothetical protein MTR_7g116840 [Medicago truncatula] gi|355501539|gb|AES82742.1| hypothetical protein MTR_7g116840 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 131/247 (53%), Positives = 169/247 (68%), Gaps = 14/247 (5%)
Query: 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTP 64
+LEI LISAQGLK PSS R QTYAL WIDSSTKL TRVD+ G ++P WN+KFLF++TP
Sbjct: 14 VLEINLISAQGLKPPSSPRRNFQTYALTWIDSSTKLRTRVDKIGGQNPTWNDKFLFRITP 73
Query: 65 EFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSV----ATKTPSFTAFQIRRPSG 120
EFL+SETS +SV IYA G RD+L+GTVRFL+SNI S +TP F+A QIRRPSG
Sbjct: 74 EFLASETSGVSVAIYAVGTFRDHLVGTVRFLISNILSSSSADSGNRTPCFSAVQIRRPSG 133
Query: 121 RFQGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGE--SKRKESLMTRKSKSMADEFDAGD 178
F G+L+IG+M++DGS PA +++SAIGY DLMGE R++ L+ +K K + AG+
Sbjct: 134 SFCGILNIGAMVVDGSGFPALEKISAIGYHDLMGEKIKHRRKKLLEQKPKEVT---VAGE 190
Query: 179 DESWENSSC-AESLCSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLRSASESMLCGL 237
+ S E SC AES +G+ +T+S+SS +T LKEWNG A L LC L
Sbjct: 191 EVSSE--SCDAESSVDEGSTTTSSTSSPKTTALKEWNGVRELSAGNKGL--VGSGFLCCL 246
Query: 238 LMERKNR 244
+ +R +
Sbjct: 247 VAQRNSH 253
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Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504149|ref|XP_003520861.1| PREDICTED: BON1-associated protein 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/239 (48%), Positives = 157/239 (65%), Gaps = 19/239 (7%)
Query: 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVT 63
Q+LEI LISAQG+K PSS RR+QTYA+ WID +TKL TRVD+ G +P WN+KFLF VT
Sbjct: 9 QVLEINLISAQGMKPPSSPRRRLQTYAVTWIDPATKLRTRVDKLGGHNPTWNDKFLFGVT 68
Query: 64 PEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNI-SLSVATKTPSFTAFQIRRPSGRF 122
+FL+ +TS++ V IYA G R +L+GTVRFL+SN+ S TP F+AFQIRRPSGRF
Sbjct: 69 KDFLAGDTSSVCVAIYAVGTFRHHLVGTVRFLISNMFSPDADDATPCFSAFQIRRPSGRF 128
Query: 123 QGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGESKRKESLMTRKSKSMADEFDAGDDESW 182
GV++IG+M++DGS PA +++SA+GYRDLMGE + R+ + E G+ ESW
Sbjct: 129 HGVMNIGAMVMDGSGFPALEKISALGYRDLMGEKIHQRRRRNRRKRKCCRE---GEGESW 185
Query: 183 ENSSCAESLCSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLRSASESMLCGLLMER 241
+++SSS T+ LK+WNG L LA L ++ LC L+ +R
Sbjct: 186 T--------------ASSSSSPRTTAALKDWNG-LRELAGNKGLAMSASGFLCCLVTQR 229
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147867306|emb|CAN79006.1| hypothetical protein VITISV_040896 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 129/263 (49%), Positives = 172/263 (65%), Gaps = 15/263 (5%)
Query: 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLF 60
M TQ+LEIILIS Q LK PS +RRMQT ALVW+DS+ KL T+VDR G E+P WN+KF+F
Sbjct: 24 METQLLEIILISTQDLKPPSGNLRRMQTCALVWVDSANKLRTQVDRVGVENPTWNDKFIF 83
Query: 61 KVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNI-------SLSVATKTPSFTAF 113
+ + +FL+ TS ++VEIYA G +RD+LIGTVR L+SN S + A ++PS TA
Sbjct: 84 RASSDFLACATSIVAVEIYAVGVIRDHLIGTVRILISNCLPAADLRSRNFAARSPSLTAV 143
Query: 114 QIRRPSGRFQGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGESKR-KESLMTRKSKSMAD 172
QIRRPSGRF VL++ + +++ SD + AI + DLMG+S R + R +KS +
Sbjct: 144 QIRRPSGRFHSVLNVAAAVVNASDFASLTGTLAIDHHDLMGQSLRCRRGHRQRTAKS--E 201
Query: 173 EFDAGDDESWENSSCAESL-CSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLRSASE 231
+ G ES ++ SCA+S SDGADSTTSSSST STVLK+ N L +A +S
Sbjct: 202 QLSGG--ESCDH-SCADSTDYSDGADSTTSSSSTASTVLKDRN-ILREMAGTKAFKSDDG 257
Query: 232 SMLCGLLMERKNRSKPSDENVDV 254
+LCGL + K PSD+N +
Sbjct: 258 GVLCGLGFQMKIHLSPSDQNFQL 280
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432070|ref|XP_004133823.1| PREDICTED: uncharacterized protein LOC101212280 [Cucumis sativus] gi|449480295|ref|XP_004155854.1| PREDICTED: uncharacterized protein LOC101225970 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 109/241 (45%), Positives = 146/241 (60%), Gaps = 7/241 (2%)
Query: 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVT 63
+LEI LISAQ LK PS+ TYA+ W+ S +L TR+D G E+P WN+KFLF+V+
Sbjct: 18 HVLEINLISAQDLKIPSNHFNPKHTYAVAWVHPSHRLRTRLDTIGGENPTWNDKFLFRVS 77
Query: 64 PEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSN-ISLSVATKTPSFTAFQIRRPSGRF 122
PEFL+ ETS +S+EIY+ G D L+GTVRFL+ N I+ + + TPSFTA Q+RRPSGRF
Sbjct: 78 PEFLARETSGVSIEIYSLGRFCDTLVGTVRFLIGNVIAPNDCSTTPSFTAVQVRRPSGRF 137
Query: 123 QGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGESKRKESLMTRKSKSMADEFDAGDDESW 182
GVL++ M+ SD + + VSAIGYRDLMGES ++ K D+ D
Sbjct: 138 HGVLNVAVMVNGNSDFASLNGVSAIGYRDLMGESLNRKQRTRSKVWGSETSLDSHDL--- 194
Query: 183 ENSSCAESLCSDGADSTTSSSSTTSTVLKEWNGSLNCLARINRLR-SASESMLCGLLMER 241
S S S+ + S+ S S VL++ N N L L+ S S LCGL+M++
Sbjct: 195 --ESSEMSDGSESSSSSACSPSRNPNVLRDLNAIRNNLGGTKTLKPSKSSGFLCGLMMQK 252
Query: 242 K 242
K
Sbjct: 253 K 253
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 254 | ||||||
| TAIR|locus:2124933 | 250 | AT4G01200 "AT4G01200" [Arabido | 0.952 | 0.968 | 0.494 | 1.4e-55 | |
| TAIR|locus:2197868 | 601 | AT1G04540 "AT1G04540" [Arabido | 0.511 | 0.216 | 0.466 | 1.1e-26 | |
| TAIR|locus:2102980 | 391 | AT3G04360 "AT3G04360" [Arabido | 0.665 | 0.432 | 0.390 | 6.8e-24 | |
| TAIR|locus:2041654 | 401 | AT2G13350 "AT2G13350" [Arabido | 0.716 | 0.453 | 0.375 | 5.7e-23 | |
| TAIR|locus:2172828 | 219 | AT5G23950 "AT5G23950" [Arabido | 0.476 | 0.552 | 0.288 | 9.7e-09 | |
| TAIR|locus:2050782 | 207 | BAP2 "AT2G45760" [Arabidopsis | 0.5 | 0.613 | 0.301 | 2.9e-08 | |
| TAIR|locus:2025002 | 352 | AT1G07310 "AT1G07310" [Arabido | 0.511 | 0.369 | 0.270 | 1.2e-07 | |
| TAIR|locus:5019474737 | 367 | AT2G40815 "AT2G40815" [Arabido | 0.358 | 0.247 | 0.322 | 5.2e-07 | |
| TAIR|locus:2088334 | 360 | AT3G16510 "AT3G16510" [Arabido | 0.488 | 0.344 | 0.288 | 0.00033 |
| TAIR|locus:2124933 AT4G01200 "AT4G01200" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
Identities = 126/255 (49%), Positives = 169/255 (66%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKV 62
TQ+LEI LISAQGLK P+ K+RR+QTYA VW+DSS+KL TR+DR G+E+PIWN+KF+F+V
Sbjct: 4 TQVLEINLISAQGLKEPTGKLRRLQTYASVWVDSSSKLRTRIDRIGSENPIWNDKFVFQV 63
Query: 63 TPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF 122
+PEFLSSETS +S+EIYA GYLRD+LIGTVRFLVSN + A K PS A QIRRPSG+F
Sbjct: 64 SPEFLSSETSGVSIEIYAVGYLRDHLIGTVRFLVSNFLPTAAVKVPSLVALQIRRPSGKF 123
Query: 123 QGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGESKRKESLMTRKSKSMADEFDAGDDESW 182
GVL+I +M++D S+LPA D ++ +++ K ++S R + S ++ A D ES
Sbjct: 124 HGVLNIAAMVMDASELPA-DFFKSV--QEIRRSRKMRKS---RSAVSSSENGSADDGESS 177
Query: 183 -ENSSCAE-SLCSDGADXXXXXXXXXXXVLKEWNGSLNCLARINRLRSASES--MLCGLL 238
ENS C + DG D L++WN N LA N +RS+S+ ++C L
Sbjct: 178 KENSVCGSVNFSDDGTDSTASSPMPSP--LRDWNAVRN-LAGKNHVRSSSDGGGLMCCFL 234
Query: 239 MERKNRSKPSDENVD 253
M+ P + D
Sbjct: 235 MKSSGMLPPRRKMTD 249
|
|
| TAIR|locus:2197868 AT1G04540 "AT1G04540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 293 (108.2 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 69/148 (46%), Positives = 95/148 (64%)
Query: 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVT 63
Q+LE+ +ISAQ L +P + R+ +TYA+ W+ S KL TRVD G +P WN+KF+F+V
Sbjct: 9 QLLELNIISAQDL-APVA--RKTKTYAVAWVHSERKLTTRVDYNGGTNPTWNDKFVFRVN 65
Query: 64 PEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNI-----------SLSVATKTPS--- 109
EFL ++TSA+ +EIYA + RD +GTVR L+SN+ S + +TP
Sbjct: 66 EEFLYADTSAVVIEIYALHWFRDVHVGTVRVLISNLIPPNRRPGYRTSNNEYRRTPPPGM 125
Query: 110 -FTAFQIRRPSGRFQGVLSIGSMLIDGS 136
F A Q+RR SGR QG+L+IG LIDGS
Sbjct: 126 RFVALQVRRTSGRPQGILNIGVGLIDGS 153
|
|
| TAIR|locus:2102980 AT3G04360 "AT3G04360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
Identities = 75/192 (39%), Positives = 106/192 (55%)
Query: 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLCTRVDRAGAESPIWNEKFL 59
A +LEI LISAQ L +P S R M+TY++ WI D KL TRVD++ +PIWNEKF+
Sbjct: 7 ACPVLEINLISAQDL-APVS--RNMKTYSVAWINTDPMRKLTTRVDQSNRANPIWNEKFV 63
Query: 60 FKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVA-----------TKTP 108
F+V + L + SAI +EIYA+ + +D L+GTV L+S++ +
Sbjct: 64 FRVNDKILYVDASAIVIEIYAAAWAKDALVGTVNVLLSDLFAPWSGFGDGNDGGGGNNNM 123
Query: 109 SFTAFQIRRPSGRFQGVLSIGSMLIDGSD--LPAFDEV---SAIGYRDLMGESKRKESLM 163
QIRRPSGR QG L +G L+DG +P EV S G R+ + + +M
Sbjct: 124 RLVTLQIRRPSGRLQGFLRLGVALLDGGQRSMPLSIEVFDGSRKGERNSVKRDQEASRMM 183
Query: 164 TRKSKSMADEFD 175
R++ S D+ D
Sbjct: 184 HRRTNS--DQTD 193
|
|
| TAIR|locus:2041654 AT2G13350 "AT2G13350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 266 (98.7 bits), Expect = 5.7e-23, P = 5.7e-23
Identities = 74/197 (37%), Positives = 103/197 (52%)
Query: 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVT 63
QILE+ +ISAQ L +P + R M+TYA+ WID KL TRVD G SP WN+KF+F++
Sbjct: 8 QILELNIISAQEL-APVA--RCMKTYAIAWIDPERKLTTRVDNTGGTSPTWNDKFVFRLD 64
Query: 64 PEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSN-ISLSVATKTPSFTAFQIRRPSGRF 122
E L TS + +EIYA + +D +GTV+ L+S+ +S S A + F ++ R SGR
Sbjct: 65 EEALYDATSIVVIEIYALHWFKDIHVGTVQALISDLVSPSSAMR---FVTLEVLRASGRP 121
Query: 123 QGVLSIGSMLID--GSDLPAFDEVSAIGYRDLMGESKRKESLMTRKSKSMADEFDAGDDE 180
G+L+I LID G +P E DL+ K S +S +D D
Sbjct: 122 HGLLNIAVGLIDNSGQSMPLLFE------EDLLFHKKNISSKPVGLRRSKSDTSSMVDSP 175
Query: 181 SWENSSCAESLCSDGAD 197
S S + G D
Sbjct: 176 RKVTQSRVSSTTNSGFD 192
|
|
| TAIR|locus:2172828 AT5G23950 "AT5G23950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 145 (56.1 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 36/125 (28%), Positives = 62/125 (49%)
Query: 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPE 65
+E+ + SA+ +K+ + + + YA+VWID K TRVD G WNE F+ + P
Sbjct: 8 VEVTISSAKDIKNVNWRNGPNKPYAVVWIDPKFKSSTRVDEDGNTCTTWNETFVIALPPA 67
Query: 66 FLSSETSAISVEIYASGYLRDY--LIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQ 123
+ + + + I +G + LIG+ + ++ V P +++RPSGR Q
Sbjct: 68 --NDDDDKVYINIVHAGREENTKPLIGSAHLSLRDVIDDVGFGVPFMKTLKLKRPSGRPQ 125
Query: 124 GVLSI 128
G L +
Sbjct: 126 GKLDV 130
|
|
| TAIR|locus:2050782 BAP2 "AT2G45760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 140 (54.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 41/136 (30%), Positives = 77/136 (56%)
Query: 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPE 65
LEI +ISA+GLK +++ +TY++V ID + ++VD G PIW ++F ++ P
Sbjct: 10 LEIEVISAEGLKVDRKPLKK-KTYSVVRIDEKS-WASKVDELGGSYPIWKDRFDMEM-P- 65
Query: 66 FLSSETSAISVEIY--ASGYLRDYLIGTVRFLVSNISLSVATKTP-SFTAFQIRRPSGRF 122
+++ IS+E+Y SG RD +G + V++ A + +F ++++R G
Sbjct: 66 -INASVRFISIEVYYRTSGSGRDKNVGYAKIPVTDFMGGFAPQGHLNFLSYRLRDEYGDK 124
Query: 123 QGVLSIGSMLI-DGSD 137
G++++ M+ DG+D
Sbjct: 125 CGIVNVSIMVKPDGND 140
|
|
| TAIR|locus:2025002 AT1G07310 "AT1G07310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 37/137 (27%), Positives = 73/137 (53%)
Query: 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPE 65
L + ++SA+ LK+ + + ++ Y ++++D L TR D + + P+WNE+ +T
Sbjct: 9 LVVTVVSAKHLKNVNWRNGDLKPYVVLYLDQDHPLSTRSDDSSSIKPVWNERITLPLTR- 67
Query: 66 FLSSETSAISVEIYASGY--LRDYLIGTVRFLVSNISLSVATKTPSF-TAFQIRRPSGRF 122
S S +++E++ S L L+G+VRF ++ + S + P + ++ RPSGR
Sbjct: 68 --SVHESVLNIEVFHSNSSDLAKTLVGSVRFPLARLIDSDGSMIPELINSLELVRPSGRP 125
Query: 123 QGVLSIGSMLIDGSDLP 139
QG + + + I +P
Sbjct: 126 QGKIRL-KLAIKDRPIP 141
|
|
| TAIR|locus:5019474737 AT2G40815 "AT2G40815" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 138 (53.6 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 31/96 (32%), Positives = 52/96 (54%)
Query: 1 MATQILEIILISAQGLK---SPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEK 57
M ++EI +ISA+GL+ S + + Q YA+ W+D K CT +D + A++P+W K
Sbjct: 1 MGKILVEICMISARGLRVGIGIGSSLLKHQWYAVGWLDPEDKYCTTIDASRADNPVWRTK 60
Query: 58 FLFKVTPEFLSSETSAISVEIYASG--YLRDYLIGT 91
F + + A+ VE+Y+ +LR L G+
Sbjct: 61 FATLLDDSTIQDSKLALQVEVYSREPLFLRKRLHGS 96
|
|
| TAIR|locus:2088334 AT3G16510 "AT3G16510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 114 (45.2 bits), Expect = 0.00033, P = 0.00033
Identities = 41/142 (28%), Positives = 63/142 (44%)
Query: 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLC---TRVDRAGAESPIWN 55
MA LE+ + SA+ L++ + + +M YA+VWI D S K T +DR G P WN
Sbjct: 1 MANLTLELNVYSAKDLENVNL-ITKMDVYAVVWITGDDSRKNHKEKTPIDRTGESEPTWN 59
Query: 56 EKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPS------ 109
F V + V++ D +G V+ V + L + +PS
Sbjct: 60 HTVKFSVDQRLAHEGRLTLVVKLVCDRIFGDKDLGEVQVPV--LELLHGSSSPSSNGDGQ 117
Query: 110 ----FTAFQIRRPSGRFQGVLS 127
F +Q+R P G+ QG L+
Sbjct: 118 GMMRFVTYQVRTPFGKGQGSLT 139
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.369 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 254 243 0.00097 113 3 11 22 0.45 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 9
No. of states in DFA: 606 (64 KB)
Total size of DFA: 181 KB (2104 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.30u 0.12s 20.42t Elapsed: 00:00:01
Total cpu time: 20.30u 0.12s 20.42t Elapsed: 00:00:01
Start: Sat May 11 04:47:40 2013 End: Sat May 11 04:47:41 2013
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 254 | |||
| cd04051 | 125 | cd04051, C2_SRC2_like, C2 domain present in Soybea | 4e-38 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-10 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 9e-10 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 1e-09 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 8e-05 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 2e-04 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 2e-04 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 5e-04 | |
| cd04011 | 111 | cd04011, C2B_Ferlin, C2 domain second repeat in Fe | 0.003 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 0.004 |
| >gnl|CDD|176016 cd04051, C2_SRC2_like, C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-38
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 3/126 (2%)
Query: 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTP 64
LEI +ISA+ LK+ + +M+ YA+VWID S K T VDR G +P WNE F +
Sbjct: 1 TLEITIISAEDLKNVNLF-GKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDE 59
Query: 65 EFLSSETSAISVEIYASGY-LRDYLIGTVRFLVSNISLSVATK-TPSFTAFQIRRPSGRF 122
L A+++E+Y L D LIG VR + ++ + F ++Q+RRPSG+
Sbjct: 60 RLLQQGRLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKP 119
Query: 123 QGVLSI 128
QGVL+
Sbjct: 120 QGVLNF 125
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-10
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 9/98 (9%)
Query: 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKV 62
L + +ISA+ L P K + Y V +D K T+V + +P+WNE F F+V
Sbjct: 1 TLTVKIISARNLP-PKDKGGKSDPYVKVSLDGDPKEKKKTKVVK-NTLNPVWNETFEFEV 58
Query: 63 TPEFLSSETSAISVEIYAS-GYLRDYLIGTVRFLVSNI 99
P E + + +E+Y + RD IG V +S++
Sbjct: 59 PP----PELAELEIEVYDKDRFGRDDFIGQVTIPLSDL 92
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-10
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 6 LEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLCTRVDRAGAESPIWNEKFLFKVT 63
L + +ISA+ L P + Y V + T+V + +P+WNE F F+VT
Sbjct: 1 LRVTVISAKNLP-PKDLNGKSDPYVKVSLGGQKKDTKKTKVVK-NTLNPVWNETFTFEVT 58
Query: 64 PEFLSSETSAISVEIYASGYL-RDYLIGTVR 93
L+ + +E+Y +D IG V
Sbjct: 59 LPELAE----LRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-09
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPE 65
L + +I A+ L + + Y V + K T+V + +P+WNE F F V
Sbjct: 1 LRVTVIEARNLPAKDLN-GKSDPYVKVSLGGKQKFKTKVVKNTL-NPVWNETFEFPVLDP 58
Query: 66 FLSSETSAISVEIY-ASGYLRDYLIGTVRFLVSNI 99
E+ ++VE++ + +D +G V +S +
Sbjct: 59 ----ESDTLTVEVWDKDRFSKDDFLGEVEIPLSEL 89
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 8e-05
Identities = 24/128 (18%), Positives = 46/128 (35%), Gaps = 15/128 (11%)
Query: 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLF 60
+ TQ+ + SA+GL S Y ++ + + V + SP ++ + +F
Sbjct: 3 VVTQV---HVHSAEGLSKQDSGGGA-DPYVII-KCEGESVRSPVQK-DTLSPEFDTQAIF 56
Query: 61 -KVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS 119
+ P S I ++++ S L D +G P + R +
Sbjct: 57 YRKKPR------SPIKIQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPLRK--RGRDAA 108
Query: 120 GRFQGVLS 127
G G +S
Sbjct: 109 GEVPGTIS 116
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKV 62
LE++LISA+GL+ + + ++ Y ++ + + V + +P WNEKF F V
Sbjct: 2 TLEVLLISAKGLQD-TDFLGKIDPYVIIQCRTQERKSK-VAKGDGRNPEWNEKFKFTV 57
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 24/92 (26%), Positives = 44/92 (47%), Gaps = 8/92 (8%)
Query: 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLC-TRVDRAGAESPIWNEKFLFKVT 63
+L + + SA+GLK + Y I + +L T+V + + +P+WNE
Sbjct: 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTS-NPVWNETKYI--- 58
Query: 64 PEFLSSETSAISVEIYA-SGYLRDYLIGTVRF 94
++S T +++ +Y + +D LIGT F
Sbjct: 59 --LVNSLTEPLNLTVYDFNDKRKDKLIGTAEF 88
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 5e-04
Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 3 TQILEIILISAQGL-KSPSSKMRRMQTYALVWI-----DSSTKLCTRVDRAGAESPIWNE 56
L I +IS Q L K K + Y V I D S K T+V + +P+WNE
Sbjct: 1 PLTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNE 60
Query: 57 KFLFKVT-PEFLSSETSAISVEIYASGYLRDYLIGT 91
F F VT PE + + +Y D +G
Sbjct: 61 TFEFDVTVPEL-----AFLRFVVYDEDSGDDDFLGQ 91
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.003
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 42 TRVDRAGAESPIWNEKFLF--KVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNI 99
T V + G P +NE F F +P+ L + ISV + D LIG+ + V +
Sbjct: 36 TSV-KKGTNCPFYNEYFFFNFHESPDELFDKIIKISV-YDSRSLRSDTLIGSFKLDVGTV 93
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 46 RAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDY-LIGTV 92
GA SP +NE F FKVT L +T+++S+ + SG +R L+G V
Sbjct: 58 VDGAASPSFNESFSFKVTSRQL--DTASLSLSVMQSGGVRKSKLLGRV 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.91 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.89 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.89 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.88 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.88 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.86 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.86 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.86 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.86 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.86 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.85 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.85 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.85 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.85 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.85 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.84 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.84 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.83 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.83 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.83 | |
| KOG1030 | 168 | consensus Predicted Ca2+-dependent phospholipid-bi | 99.83 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.82 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.82 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.82 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.82 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.81 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.81 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.81 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.81 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.8 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.8 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.79 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.79 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.79 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.79 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.78 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.78 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.78 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.78 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.78 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.78 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.78 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.77 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.77 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.77 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.77 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.77 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.77 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.77 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.76 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.76 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.76 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.76 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.76 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.75 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.75 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.75 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.75 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.74 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.74 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.74 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.74 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.74 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.73 | |
| PLN03008 | 868 | Phospholipase D delta | 99.72 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.72 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.72 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.72 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.72 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.71 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.71 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.71 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.71 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.7 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.7 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.7 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.69 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.69 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.68 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.67 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.67 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.67 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.67 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.67 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.67 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.66 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.66 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.65 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.65 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.64 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.64 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.62 | |
| KOG0696 | 683 | consensus Serine/threonine protein kinase [Signal | 99.6 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.59 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.58 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.57 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.47 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.43 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.43 | |
| PLN02270 | 808 | phospholipase D alpha | 99.43 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 99.41 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.38 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 99.38 | |
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.37 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 99.37 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 99.29 | |
| KOG0169 | 746 | consensus Phosphoinositide-specific phospholipase | 99.29 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 99.27 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 99.26 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 99.26 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 99.23 | |
| KOG1028 | 421 | consensus Ca2+-dependent phospholipid-binding prot | 99.18 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 99.0 | |
| KOG1264 | 1267 | consensus Phospholipase C [Lipid transport and met | 98.98 | |
| KOG1328 | 1103 | consensus Synaptic vesicle protein BAIAP3, involve | 98.93 | |
| PLN02352 | 758 | phospholipase D epsilon | 98.92 | |
| KOG1031 | 1169 | consensus Predicted Ca2+-dependent phospholipid-bi | 98.8 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 98.79 | |
| KOG2059 | 800 | consensus Ras GTPase-activating protein [Signal tr | 98.45 | |
| KOG1265 | 1189 | consensus Phospholipase C [Lipid transport and met | 98.34 | |
| KOG0905 | 1639 | consensus Phosphoinositide 3-kinase [Signal transd | 98.21 | |
| KOG1013 | 362 | consensus Synaptic vesicle protein rabphilin-3A [I | 97.96 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.9 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.82 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.67 | |
| KOG1011 | 1283 | consensus Neurotransmitter release regulator, UNC- | 97.65 | |
| KOG3837 | 523 | consensus Uncharacterized conserved protein, conta | 97.64 | |
| KOG2060 | 405 | consensus Rab3 effector RIM1 and related proteins, | 97.4 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 97.21 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.17 | |
| KOG1326 | 1105 | consensus Membrane-associated protein FER-1 and re | 97.04 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 96.31 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.29 | |
| PF11618 | 107 | DUF3250: Protein of unknown function (DUF3250); In | 96.26 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 96.04 | |
| KOG1452 | 442 | consensus Predicted Rho GTPase-activating protein | 95.97 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 95.11 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 94.96 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 94.91 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 94.8 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 94.62 | |
| PF15625 | 168 | CC2D2AN-C2: CC2D2A N-terminal C2 domain | 94.37 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 94.21 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 93.88 | |
| cd08687 | 98 | C2_PKN-like C2 domain in Protein kinase C-like (PK | 93.67 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 93.37 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 93.14 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 92.21 | |
| cd08679 | 178 | C2_DOCK180_related C2 domains found in Dedicator O | 89.55 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 87.37 | |
| cd08696 | 179 | C2_Dock-C C2 domains found in Dedicator Of CytoKin | 85.41 | |
| KOG1327 | 529 | consensus Copine [Signal transduction mechanisms] | 81.42 |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=168.66 Aligned_cols=118 Identities=17% Similarity=0.274 Sum_probs=98.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|+|+|+|++|++|++. + +|++||||+|.+++. +++|+++.+++.||+|||+|.|.+.. ....|.|+|||++
T Consensus 1 ~g~L~v~v~~Ak~l~~~-~-~g~sDPYv~i~lg~~-~~kT~v~~~~~~nP~WNe~F~f~v~~-----~~~~l~~~V~d~d 72 (121)
T cd04016 1 VGRLSITVVQAKLVKNY-G-LTRMDPYCRIRVGHA-VYETPTAYNGAKNPRWNKTIQCTLPE-----GVDSIYIEIFDER 72 (121)
T ss_pred CcEEEEEEEEccCCCcC-C-CCCCCceEEEEECCE-EEEeEEccCCCCCCccCeEEEEEecC-----CCcEEEEEEEeCC
Confidence 47999999999999887 5 799999999999764 67999988778999999999999976 3568999999999
Q ss_pred -CCCCceeEEEEEeCcc-ccccCCCCCCeeEEEEeeCCCC-CcceEEEEEEEE
Q 047341 83 -YLRDYLIGTVRFLVSN-ISLSVATKTPSFTAFQIRRPSG-RFQGVLSIGSML 132 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~-l~~~~~~~~~~~~~~~L~~~~g-~~~G~I~lsl~f 132 (254)
+.+|++||.+.|+|.. +..+.. ...||+|...++ ...|.|+|+++|
T Consensus 73 ~~~~dd~iG~~~i~l~~~~~~g~~----~~~W~~L~~~~~~~~~g~i~l~l~y 121 (121)
T cd04016 73 AFTMDERIAWTHITIPESVFNGET----LDDWYSLSGKQGEDKEGMINLVFSY 121 (121)
T ss_pred CCcCCceEEEEEEECchhccCCCC----ccccEeCcCccCCCCceEEEEEEeC
Confidence 5679999999999964 554432 357888875433 468999999987
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=159.23 Aligned_cols=118 Identities=19% Similarity=0.364 Sum_probs=100.5
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|.|+|+|++|++|++. +..+.+||||+|.+++. +.+|+++.+++.||+|||.|.|.+... ....|.|+|||++.
T Consensus 1 g~L~V~v~~A~~L~~~-~~~~~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNK-RKLDKQDPYCVLRIGGV-TKKTKTDFRGGQHPEWDEELRFEITED----KKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCC-CcCCCCCceEEEEECCC-ccccccccCCCCCCccCceEEEEecCC----CCCEEEEEEEeCCC
Confidence 6899999999999998 78899999999999864 568888766689999999999999863 36789999999986
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
.+|++||++.+++.++..+.. ...||+|.. +++..|+|+|+++|
T Consensus 75 ~~~~~iG~~~~~l~~~~~~~~----~~~w~~L~~-~~~~~G~i~l~l~f 118 (118)
T cd08681 75 RKPDLIGDTEVDLSPALKEGE----FDDWYELTL-KGRYAGEVYLELTF 118 (118)
T ss_pred CCCcceEEEEEecHHHhhcCC----CCCcEEecc-CCcEeeEEEEEEEC
Confidence 569999999999999876532 246788865 56789999999987
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=160.25 Aligned_cols=123 Identities=40% Similarity=0.673 Sum_probs=103.7
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY- 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~- 83 (254)
+|+|+|++|++|+.. +..+++||||+|++++..+.+|+++++++.||.|||.|.|.+....+......|.|+|||++.
T Consensus 1 ~L~V~V~sA~~L~~~-~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~ 79 (125)
T cd04051 1 TLEITIISAEDLKNV-NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPS 79 (125)
T ss_pred CEEEEEEEcccCCCC-CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCC
Confidence 589999999999998 788999999999998756779999876689999999999999873211236899999999984
Q ss_pred CCCceeEEEEEeCccccccCCC-CCCeeEEEEeeCCCCCcceEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVAT-KTPSFTAFQIRRPSGRFQGVLSI 128 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~-~~~~~~~~~L~~~~g~~~G~I~l 128 (254)
.+|++||++.|+|.++..+... ......+|+|..++|+++|+|+|
T Consensus 80 ~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~ 125 (125)
T cd04051 80 LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF 125 (125)
T ss_pred CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence 6799999999999999876642 12357899999889999999985
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-22 Score=156.67 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=102.0
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-C
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY-L 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~-~ 84 (254)
|+|+|++|++|+.. +..|.+||||++.+++...++|+++++ +.||+|||.|.|.+.. ....|.|+|||++. .
T Consensus 2 L~v~v~~a~~L~~~-d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~-----~~~~l~~~v~D~d~~~ 74 (121)
T cd04042 2 LDIHLKEGRNLAAR-DRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIED-----VTQPLYIKVFDYDRGL 74 (121)
T ss_pred eEEEEEEeeCCCCc-CCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecC-----CCCeEEEEEEeCCCCC
Confidence 89999999999998 788999999999998766789999875 8999999999999875 36789999999994 4
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC-CcceEEEEEEEEEe
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG-RFQGVLSIGSMLID 134 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g-~~~G~I~lsl~f~p 134 (254)
+|++||.+.+++.++..+.. ...+++|..+++ +..|+|+|.++|.|
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~----~~~~~~L~~~~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKP----TEVKLKLEDPNSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCcceEEEEEEHHHcCCCCC----eEEEEECCCCCCccCceEEEEEEEECC
Confidence 79999999999999886543 457889976543 67999999999975
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=161.89 Aligned_cols=125 Identities=21% Similarity=0.326 Sum_probs=103.7
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
.|+|+|++|++|++. +..|.+||||+|.+++ ++.+|++..+++.||+|||.|.|.+... ....|.|+|||++ .
T Consensus 1 ~L~V~Vi~A~~L~~~-d~~g~sDPYV~v~l~~-~~~kTk~~~~~t~nP~WNE~F~f~v~~~----~~~~l~v~V~d~~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPS-DKNRVPEVFVKAQLGN-QVLRTRPSQTRNGNPSWNEELMFVAAEP----FEDHLILSVEDRVGP 74 (150)
T ss_pred CEEEEEEEeECCCCC-CCCCCCCeEEEEEECC-EEeeeEeccCCCCCCcccCcEEEEecCc----cCCeEEEEEEEecCC
Confidence 389999999999998 8889999999999987 4679998876579999999999999752 2578999999998 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC--------CcceEEEEEEEEEeC
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG--------RFQGVLSIGSMLIDG 135 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g--------~~~G~I~lsl~f~p~ 135 (254)
.+|++||++.|||+++..+...+.....||+|..+.+ +..|+|+|.++|.+.
T Consensus 75 ~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~ 134 (150)
T cd04019 75 NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG 134 (150)
T ss_pred CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence 5799999999999998765322233468999986543 568999999999854
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=153.27 Aligned_cols=120 Identities=15% Similarity=0.337 Sum_probs=96.0
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCc-cCCCcEEEEEEEecC-C
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL-SSETSAISVEIYASG-Y 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l-~~~~~~L~veV~D~d-~ 83 (254)
|+|+|++|+||+.. +..|.+||||+|.+++. +++|+++++ +.||+|||+|.|.+..... ......|.|+|||++ +
T Consensus 1 ~~V~V~~A~~L~~~-d~~g~~dpYv~v~l~~~-~~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~ 77 (126)
T cd08682 1 VQVTVLQARGLLCK-GKSGTNDAYVIIQLGKE-KYSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL 77 (126)
T ss_pred CEEEEEECcCCcCC-CCCcCCCceEEEEECCe-eeeeeeecC-CCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence 58999999999988 78899999999999754 679999876 8999999999999976200 013678999999998 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCC---CCcceEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS---GRFQGVLSIGS 130 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~---g~~~G~I~lsl 130 (254)
.+|++||++.|+|.++..... .....||+|.... .+..|+|+|++
T Consensus 78 ~~d~~iG~~~i~l~~l~~~~~--~~~~~W~~L~~~~~~~~~~~Gei~l~~ 125 (126)
T cd08682 78 GLDKFLGQVSIPLNDLDEDKG--RRRTRWFKLESKPGKDDKERGEIEVDI 125 (126)
T ss_pred CCCceeEEEEEEHHHhhccCC--CcccEEEECcCCCCCCccccceEEEEe
Confidence 569999999999999873221 2245899997432 35689999987
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-21 Score=150.87 Aligned_cols=122 Identities=22% Similarity=0.321 Sum_probs=100.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC-cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS-STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~-~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
.|.|+|+|++|++|+......+.+||||+|.+++ ....+|+++++ +.||.|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~-----~~~~l~~~v~d~ 74 (124)
T cd04044 1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNS-----LTEPLNLTVYDF 74 (124)
T ss_pred CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCC-----CCCEEEEEEEec
Confidence 4789999999999997522446799999999987 46789999875 9999999999999974 478999999999
Q ss_pred C-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEe
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLID 134 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p 134 (254)
+ ..+|++||.+.++|.++...... ...++.+. .+++.+|+|+++++|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~---~~~~~~~~-~~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPEQ---ENLTKNLL-RNGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCccc---cCcchhhh-cCCccceEEEEEEEeCC
Confidence 8 45789999999999998866531 12234443 47788999999999986
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-21 Score=152.24 Aligned_cols=122 Identities=20% Similarity=0.411 Sum_probs=101.2
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc------CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS------TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~------~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+.. ....|.|+|
T Consensus 1 ~L~v~Vi~a~~L~~~-d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~~~v 73 (133)
T cd04033 1 ILRVKVLAGIDLAKK-DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNP-----REHRLLFEV 73 (133)
T ss_pred CEEEEEEEeECCCcc-cCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcC-----CCCEEEEEE
Confidence 489999999999988 78899999999999754 2568998875 9999999999999975 357899999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCC--CCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATK--TPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~--~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
||++ ..+|++||.+.|++.++....+.+ .....||+|..+ .++..|+|+|++.|.
T Consensus 74 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~ 133 (133)
T cd04033 74 FDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL 133 (133)
T ss_pred EECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence 9999 457899999999999988765421 234678888753 567899999999984
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=149.60 Aligned_cols=119 Identities=18% Similarity=0.423 Sum_probs=99.0
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECC-cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDS-STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~-~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
|.|+|++|++|+. ..|.+||||++.++. ..+.+|++.++ +.||+|||.|.|.+.. ....|.|+|||++ .
T Consensus 1 l~v~v~~A~~L~~---~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE---AAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSP-----NSKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC---CCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCC-----CCCEEEEEEEECCCC
Confidence 5799999999986 468999999999974 35679999875 8999999999999965 3678999999999 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC---CCCcceEEEEEEEEEeCCC
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP---SGRFQGVLSIGSMLIDGSD 137 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~---~g~~~G~I~lsl~f~p~~~ 137 (254)
.+|++||++.|++.++..... ...+|+|... +....|+|.+.+.|.+.+.
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPS----GRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred CCCceEEEEEEeHHHhccCCc----eeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 569999999999999876543 2467888643 3467999999999998753
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=150.98 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=99.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY- 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~- 83 (254)
.|+|+|++|++|++. +..|.+||||+|.+++. +.+|++.++ +.||+|||.|.|.+.... ......|.|+|||.+.
T Consensus 1 ~L~V~vi~A~~L~~~-d~~g~~dpyv~v~~~~~-~~rT~v~~~-t~nP~Wne~f~f~~~~~~-~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPK-DGQGSSSAYVELDFDGQ-KKRTRTKPK-DLNPVWNEKLVFNVSDPS-RLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCC-CCCCCcCcEEEEEECCE-EecceeEcC-CCCCccceEEEEEccCHH-HccCCeEEEEEeeCCCC
Confidence 489999999999988 78899999999999865 569999865 899999999999997421 0124689999999884
Q ss_pred C-CCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 84 L-RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 ~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
. +|++||++.|++.++...+ .....||+|..+ .++.+|+|.|++.|.
T Consensus 77 ~~~d~~lG~v~i~l~~l~~~~---~~~~~w~~L~~~~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 77 GRRRSFLGRVRISGTSFVPPS---EAVVQRYPLEKRGLFSRVRGEIGLKVYIT 126 (127)
T ss_pred cCCCCeeeEEEEcHHHcCCCC---CccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence 3 7999999999999987432 234678898754 346899999999985
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=152.17 Aligned_cols=112 Identities=22% Similarity=0.360 Sum_probs=93.2
Q ss_pred EEEEEEEeeeC---CCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 5 ILEIILISAQG---LKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 5 ~L~V~VisA~~---L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
.|+|+|++|++ |+.. +..|.+||||+|.++++ +.||+++++ ++||+|||+|.|.+.. ....|.|+|||+
T Consensus 1 ~L~v~v~~A~~~~~l~~~-d~~g~sDPYv~i~~g~~-~~rTk~~~~-~~nP~WnE~f~f~v~~-----~~~~l~v~V~d~ 72 (126)
T cd08379 1 ILEVGILGAQGLDVLRAK-DGRGSTDAYCVAKYGPK-WVRTRTVED-SSNPRWNEQYTWPVYD-----PCTVLTVGVFDN 72 (126)
T ss_pred CeEEEEEEeECCcccccc-ccCCCCCeeEEEEECCE-EeEcCcccC-CCCCcceeEEEEEecC-----CCCEEEEEEEEC
Confidence 38999999999 7777 88899999999999755 779999975 8999999999999975 356899999999
Q ss_pred CCC-------CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCC---CCcceEEEE
Q 047341 82 GYL-------RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS---GRFQGVLSI 128 (254)
Q Consensus 82 d~~-------~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~---g~~~G~I~l 128 (254)
+.. +|++||++.|+|..+..+.. ...+|+|...+ .+..|.|++
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~----~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRV----YAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCE----EeeEEEeEeCCCCCccCCcEEEe
Confidence 843 89999999999999876543 45789997532 456788765
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.5e-20 Score=148.04 Aligned_cols=117 Identities=22% Similarity=0.305 Sum_probs=97.7
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-CC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YL 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~~ 84 (254)
|.|+|+.|++|+......|.+||||.|.++.....+|++.++ +.||+|||.|.|.+.. ....|.|.|||++ ..
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~-----~~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPR-----TFRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCC-----CCCEEEEEEEECCCCC
Confidence 789999999999863345789999999997666789999876 9999999999999986 3579999999998 55
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeC--CCCCcceEEEEEEEE
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR--PSGRFQGVLSIGSML 132 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~--~~g~~~G~I~lsl~f 132 (254)
+|++||.+.++|+++..... ...||+|.. +.++.+|+|+++++|
T Consensus 76 ~~~~iG~~~i~l~~l~~~~~----~~~w~~L~~~~~~~~~~G~i~l~~~~ 121 (121)
T cd08401 76 RDSVIGKVAIKKEDLHKYYG----KDTWFPLQPVDADSEVQGKVHLELRL 121 (121)
T ss_pred CCceEEEEEEEHHHccCCCC----cEeeEEEEccCCCCcccEEEEEEEEC
Confidence 79999999999999875432 357888874 345679999999875
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-20 Score=155.22 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=100.3
Q ss_pred ccEEEEEEEeeeCCCCCCC------------------------------CCCCCCeEEEEEECCcCeEEeEeecCCCCCC
Q 047341 3 TQILEIILISAQGLKSPSS------------------------------KMRRMQTYALVWIDSSTKLCTRVDRAGAESP 52 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d------------------------------~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP 52 (254)
.|+|+|+|.+|++|+++ | ..|.+||||+|.+++....||+++++ +.||
T Consensus 6 hG~L~v~I~eA~~L~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~-~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNM-DMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN-SENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCc-ccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-CCCC
Confidence 47899999999999987 5 34678999999998765679999875 7999
Q ss_pred eeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC---CcceEEEEE
Q 047341 53 IWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG---RFQGVLSIG 129 (254)
Q Consensus 53 ~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g---~~~G~I~ls 129 (254)
+|||.|.|.+.. ....|.|+|||.+..++++||.+.||+.++..+.. ...||+|..+.+ +..|.|+++
T Consensus 84 ~WnE~F~~~~~~-----~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~----~~~w~~L~~~~~~~~~~~~~l~v~ 154 (158)
T cd04015 84 VWNESFHIYCAH-----YASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEP----VEGWLPILDSNGKPPKPGAKIRVS 154 (158)
T ss_pred ccceEEEEEccC-----CCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCC----cceEEECcCCCCCCCCCCCEEEEE
Confidence 999999999875 35789999999997788999999999999876442 357899976533 346899999
Q ss_pred EEEE
Q 047341 130 SMLI 133 (254)
Q Consensus 130 l~f~ 133 (254)
++|.
T Consensus 155 ~~f~ 158 (158)
T cd04015 155 LQFT 158 (158)
T ss_pred EEEC
Confidence 9984
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-20 Score=147.67 Aligned_cols=120 Identities=17% Similarity=0.319 Sum_probs=100.6
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+..+|+|+|++|++|+.. +.+|.+||||+|.+++. +++|++.++ +.||+|||.|.|.+.. ....|.|+|||+
T Consensus 1 ~~~~~~V~v~~A~~L~~~-d~~g~~dPyv~v~~~~~-~~kT~v~~~-t~nP~Wne~f~f~~~~-----~~~~l~i~V~d~ 72 (126)
T cd04046 1 PQVVTQVHVHSAEGLSKQ-DSGGGADPYVIIKCEGE-SVRSPVQKD-TLSPEFDTQAIFYRKK-----PRSPIKIQVWNS 72 (126)
T ss_pred CcEEEEEEEEeCcCCCCC-CCCCCcCccEEEEECCE-EEEeCccCC-CCCCcccceEEEEecC-----CCCEEEEEEEEC
Confidence 357899999999999988 78899999999999765 679999875 8999999999999875 478999999999
Q ss_pred CCCCCceeEEEEEeCccccccCCCCCCeeEEEEee----CCCCCcceEEEEEEEEEeC
Q 047341 82 GYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR----RPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 82 d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~----~~~g~~~G~I~lsl~f~p~ 135 (254)
+..+|++||.+.+++.++... ...+|+|. ..+++..|+|.+++++.+.
T Consensus 73 ~~~~d~~lG~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~ 124 (126)
T cd04046 73 NLLCDEFLGQATLSADPNDSQ------TLRTLPLRKRGRDAAGEVPGTISVKVTSSDD 124 (126)
T ss_pred CCCCCCceEEEEEecccCCCc------CceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence 977899999999999875322 23556663 2467899999999998764
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.4e-20 Score=147.71 Aligned_cols=119 Identities=18% Similarity=0.315 Sum_probs=96.8
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.+.|+|+|++|+||+.. +.+||||+|.+++.+..+|++. . +.||.|||.|.|.+.+. ....|+|.|||.+
T Consensus 3 ~~~L~V~Vi~A~~L~~~----~~~DPYv~v~l~~~~~~kT~v~-~-~~nP~WnE~f~f~~~~~----~~~~l~v~v~d~~ 72 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK----HVPHPYCVISLNEVKVARTKVR-E-GPNPVWSEEFVFDDLPP----DVNSFTISLSNKA 72 (126)
T ss_pred eeEEEEEEEEeeCCCCC----CCCCeeEEEEECCEeEEEeecC-C-CCCCccCCEEEEecCCC----CcCEEEEEEEECC
Confidence 35799999999999875 4689999999987666789874 3 79999999999997552 2357899999998
Q ss_pred -CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCC---CCcceEEEEEEEEEeC
Q 047341 83 -YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS---GRFQGVLSIGSMLIDG 135 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~---g~~~G~I~lsl~f~p~ 135 (254)
..+|++||.+.|||.++..+.. ...||.|...+ .+..|+|+|+++|.+.
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~----~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQE----TDEWYPLSSASPLKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCc----ccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence 5679999999999999876543 35788987542 4567999999999864
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-20 Score=143.56 Aligned_cols=116 Identities=17% Similarity=0.302 Sum_probs=98.7
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|.|+|+|++|++|+.. +..+.+||||+|.+++. +.+|+++++ +.||.|||+|.|.+.. ....|.|+|||++.
T Consensus 1 g~l~v~v~~a~~L~~~-~~~~~~dPyv~v~~~~~-~~~T~~~~~-t~nP~W~e~f~~~~~~-----~~~~l~~~v~d~~~ 72 (119)
T cd08377 1 GFLQVKVIRASGLAAA-DIGGKSDPFCVLELVNA-RLQTHTIYK-TLNPEWNKIFTFPIKD-----IHDVLEVTVYDEDK 72 (119)
T ss_pred CEEEEEEEeeeCCCCC-CCCCCCCcEEEEEECCE-eeecceecC-CcCCccCcEEEEEecC-----cCCEEEEEEEECCC
Confidence 6899999999999998 78889999999999755 569999875 8999999999999865 36899999999984
Q ss_pred -CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 84 -LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 -~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
.++++||++.+++.++..+. ..||+|..+ .++.+|+|.+++.|.
T Consensus 73 ~~~~~~iG~~~~~l~~~~~~~------~~~~~l~~~~~~~~~~G~i~l~~~~~ 119 (119)
T cd08377 73 DKKPEFLGKVAIPLLSIKNGE------RKWYALKDKKLRTRAKGSILLEMDVI 119 (119)
T ss_pred CCCCceeeEEEEEHHHCCCCC------ceEEECcccCCCCceeeEEEEEEEeC
Confidence 67899999999999986443 368888754 346899999999873
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-20 Score=148.73 Aligned_cols=121 Identities=18% Similarity=0.288 Sum_probs=98.0
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
..|.|+|+|++|++|++. +..|.+||||++.++. .+++|+++++ +.||.|||+|.|.+... ....|.|+|||+
T Consensus 13 ~~G~L~V~Vi~A~~L~~~-d~~g~~DPYv~v~~~~-~~~kT~vi~~-t~nP~Wne~f~f~v~~~----~~~~l~i~V~D~ 85 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPC-NSNGKSDPYCEVSMGS-QEHKTKVVSD-TLNPKWNSSMQFFVKDL----EQDVLCITVFDR 85 (136)
T ss_pred CcEEEEEEEEEeeCCCCC-CCCCCcCcEEEEEECC-EeeeccccCC-CCCCccCceEEEEecCc----cCCEEEEEEEEC
Confidence 358999999999999998 7889999999999964 4679999875 89999999999999752 367899999999
Q ss_pred C-CCCCceeEEEEEeCccccccCC-CCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVA-TKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~-~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
+ ...|++||.+.|+|.++..... .......+.++ ++..+|+|+++++|
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~---~~~~~g~i~l~~~~ 135 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILKETKESKGPITKRLLL---HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhccccccCCCcEEEEecc---ccccceeEEEEEEe
Confidence 9 5568999999999999886332 11112233333 46778999999987
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=143.98 Aligned_cols=115 Identities=21% Similarity=0.411 Sum_probs=95.6
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|+|+|++|++|++. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++.
T Consensus 2 L~V~vi~a~~L~~~-~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~----~~~~l~v~v~d~d~ 75 (119)
T cd04036 2 LTVRVLRATNITKG-DLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQ----VKNVLELTVMDEDY 75 (119)
T ss_pred eEEEEEEeeCCCcc-CCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcc----cCCEEEEEEEECCC
Confidence 78999999999988 7789999999999964 35679999875 89999999999999763 35689999999995
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
.+|++||++.+++.++..+. ....+|+|.. +.+|+|++.+.+.
T Consensus 76 ~~~~~iG~~~~~l~~l~~g~----~~~~~~~L~~---~~~g~l~~~~~~~ 118 (119)
T cd04036 76 VMDDHLGTVLFDVSKLKLGE----KVRVTFSLNP---QGKEELEVEFLLE 118 (119)
T ss_pred CCCcccEEEEEEHHHCCCCC----cEEEEEECCC---CCCceEEEEEEee
Confidence 58999999999999987654 2467888853 3578888888763
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=145.08 Aligned_cols=117 Identities=21% Similarity=0.317 Sum_probs=97.3
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLR 85 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~ 85 (254)
|+|+|++|++|+.. .+||||+|.+++ .+.+|+++++ +.||+|||+|.|.+... ....|.|+|||++..+
T Consensus 2 L~V~Vi~a~~L~~~-----~~Dpyv~v~l~~-~~~kT~v~~~-t~nP~Wne~F~f~~~~~----~~~~L~~~v~d~d~~~ 70 (121)
T cd08378 2 LYVRVVKARGLPAN-----SNDPVVEVKLGN-YKGSTKAIER-TSNPEWNQVFAFSKDRL----QGSTLEVSVWDKDKAK 70 (121)
T ss_pred EEEEEEEecCCCcc-----cCCCEEEEEECC-ccccccccCC-CCCCccceEEEEEcCCC----cCCEEEEEEEeCCCCc
Confidence 89999999999875 589999999976 4679999875 89999999999998641 4688999999999668
Q ss_pred CceeEEEEEeCccccccCC-CCCCeeEEEEeeCCC-CCcceEEEEEEEEE
Q 047341 86 DYLIGTVRFLVSNISLSVA-TKTPSFTAFQIRRPS-GRFQGVLSIGSMLI 133 (254)
Q Consensus 86 D~~LG~~~IpL~~l~~~~~-~~~~~~~~~~L~~~~-g~~~G~I~lsl~f~ 133 (254)
+++||.+.|+|.++..... ++.....||+|.... .+.+|+|+|+++|.
T Consensus 71 ~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~~ 120 (121)
T cd08378 71 DDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWFG 120 (121)
T ss_pred CceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEec
Confidence 9999999999999876432 223346899997643 47899999999985
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=143.83 Aligned_cols=114 Identities=20% Similarity=0.423 Sum_probs=94.7
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC-
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL- 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~- 84 (254)
|+|+|++|++|+.. +..+.+||||+|.+++...++|+++++ +.||.|||.|.|.+.. ...|.|+|||++..
T Consensus 2 l~v~v~~A~~L~~~-~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~------~~~l~i~V~d~~~~~ 73 (123)
T cd08382 2 VRLTVLCADGLAKR-DLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP------SSIITIQVFDQKKFK 73 (123)
T ss_pred eEEEEEEecCCCcc-CCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC------CCEEEEEEEECCCCC
Confidence 89999999999998 788999999999998666789999875 8999999999999964 67999999999843
Q ss_pred C--CceeEEEEEeCccccccCCCCCCeeEEEEeeCC----CCCcceEEEEEE
Q 047341 85 R--DYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP----SGRFQGVLSIGS 130 (254)
Q Consensus 85 ~--D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~----~g~~~G~I~lsl 130 (254)
. |++||++.|++.++...... ...||+|+.. .+...|+|.+++
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDT---GYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCC---ccceeEeecCCCCCCceEeeEEEEEe
Confidence 2 58999999999998765431 1347777543 356789998876
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-20 Score=154.21 Aligned_cols=95 Identities=20% Similarity=0.352 Sum_probs=86.0
Q ss_pred CcccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 1 M~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
|.-|.|+|+|++|.+|... |..+++||||++.++++ +.+|++.++ ++||+|||.|+|.|.+ ++..|.++|||
T Consensus 3 ~~vGLL~v~v~~g~~L~~r-D~~~sSDPyVVl~lg~q-~lkT~~v~~-n~NPeWNe~ltf~v~d-----~~~~lkv~VyD 74 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIR-DFLGSSDPYVVLELGNQ-KLKTRVVYK-NLNPEWNEELTFTVKD-----PNTPLKVTVYD 74 (168)
T ss_pred ccceEEEEEEEeecCeeee-ccccCCCCeEEEEECCe-eeeeeeecC-CCCCcccceEEEEecC-----CCceEEEEEEe
Confidence 5678999999999999998 88899999999999755 779998865 9999999999999997 68999999999
Q ss_pred cC-CCCCceeEEEEEeCccccccC
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+| +..|+++|.|.|+|..+....
T Consensus 75 ~D~fs~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 75 KDTFSSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred CCCCCcccccceeeeccHHHHHHh
Confidence 99 678999999999999987654
|
|
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=140.28 Aligned_cols=114 Identities=16% Similarity=0.291 Sum_probs=96.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
+|+|+|++|++|+.. +..+.+||||++.+++. +.+|++.++ +.||.|||.|.|.+.+. ....|.|+|||++ .
T Consensus 1 ~~~V~v~~a~~L~~~-~~~~~~dPyv~v~~~~~-~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~v~v~d~~~~ 73 (116)
T cd08376 1 VVTIVLVEGKNLPPM-DDNGLSDPYVKFRLGNE-KYKSKVCSK-TLNPQWLEQFDLHLFDD----QSQILEIEVWDKDTG 73 (116)
T ss_pred CEEEEEEEEECCCCC-CCCCCCCcEEEEEECCE-eEecccccC-CCCCceeEEEEEEecCC----CCCEEEEEEEECCCC
Confidence 479999999999998 77899999999999754 679999875 99999999999999762 3789999999999 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
.+|++||.+.++|.++..+. ....||+|... .|+|++.+.|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~----~~~~w~~L~~~----~G~~~~~~~~~ 115 (116)
T cd08376 74 KKDEFIGRCEIDLSALPREQ----THSLELELEDG----EGSLLLLLTLT 115 (116)
T ss_pred CCCCeEEEEEEeHHHCCCCC----ceEEEEEccCC----CcEEEEEEEec
Confidence 57999999999999987543 24678888642 59999998875
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-19 Score=141.31 Aligned_cols=116 Identities=19% Similarity=0.286 Sum_probs=96.7
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-CC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YL 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~~ 84 (254)
|.|+|++|++|++. +..|.+||||+|.+++....+|+++++ ++||+|||.|.|.+.. ....|.|+|||++ ..
T Consensus 2 l~v~vi~a~~L~~~-d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~-----~~~~l~v~v~d~~~~~ 74 (121)
T cd04054 2 LYIRIVEGKNLPAK-DITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPP-----GFHTVSFYVLDEDTLS 74 (121)
T ss_pred EEEEEEEeeCCcCC-CCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCC-----CCCEEEEEEEECCCCC
Confidence 88999999999998 788999999999998765579999876 8999999999999975 3579999999999 45
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeC--CCCCcceEEEEEEE
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR--PSGRFQGVLSIGSM 131 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~--~~g~~~G~I~lsl~ 131 (254)
.|++||++.+++.++..... ....|++|.. +.+...|+|++.++
T Consensus 75 ~d~~iG~~~~~~~~~~~~~~---~~~~W~~L~~~~~~~~~~G~i~l~~~ 120 (121)
T cd04054 75 RDDVIGKVSLTREVISAHPR---GIDGWMNLTEVDPDEEVQGEIHLELS 120 (121)
T ss_pred CCCEEEEEEEcHHHhccCCC---CCCcEEECeeeCCCCccccEEEEEEE
Confidence 79999999999988764321 1246788853 45567999999876
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-19 Score=141.58 Aligned_cols=121 Identities=12% Similarity=0.217 Sum_probs=98.5
Q ss_pred cEEEEEEEeeeCCCCCCCC--CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 4 QILEIILISAQGLKSPSSK--MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~--~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
|+|+|+|++|++|+.. +. .+.+||||+|.+++ .+.+|+++++ +.||.|||.|.|.+... ....|.|+|||+
T Consensus 1 g~l~v~v~~a~~L~~~-~~~~~~~~dPyv~v~~~~-~~~kT~~~~~-t~~P~Wne~f~~~~~~~----~~~~l~i~v~d~ 73 (128)
T cd04024 1 GVLRVHVVEAKDLAAK-DRSGKGKSDPYAILSVGA-QRFKTQTIPN-TLNPKWNYWCEFPIFSA----QNQLLKLILWDK 73 (128)
T ss_pred CEEEEEEEEeeCCCcc-cCCCCCCcCCeEEEEECC-EEEecceecC-CcCCccCCcEEEEecCC----CCCEEEEEEEEC
Confidence 6899999999999988 67 78999999999965 4679999875 89999999999999752 478999999999
Q ss_pred CC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC----CCCcceEEEEEEEE
Q 047341 82 GY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP----SGRFQGVLSIGSML 132 (254)
Q Consensus 82 d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~----~g~~~G~I~lsl~f 132 (254)
+. ..+++||.+.|+|.++...... .....||.|... .....|+|+|.+++
T Consensus 74 ~~~~~~~~lG~~~i~l~~~~~~~~~-~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 74 DRFAGKDYLGEFDIALEEVFADGKT-GQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCCcceEEEEEHHHhhccccc-CccceeEEccCcccCccccccceEEEEEEC
Confidence 84 4789999999999998742211 123578888643 23479999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-19 Score=143.33 Aligned_cols=105 Identities=18% Similarity=0.263 Sum_probs=84.6
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----c--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDS----S--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.|+|+|++|++|+.. + .|.+||||+|.+.+ . ++.+|++.+ +++||+|||+|.|.+..+. ..+...|.|.|
T Consensus 1 kL~V~Vi~A~~L~~~-d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~-~tlnPvwNE~f~F~v~~~~-~~~~~~L~~~V 76 (120)
T cd08395 1 KVTVKVVAANDLKWQ-T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKN-NNWSPKYNETFQFILGNED-DPESYELHICV 76 (120)
T ss_pred CEEEEEEECcCCCcc-c-CCCCCCEEEEEEecCCCcccccEeeeEEec-CCCCCccCcEEEEEeeCcC-CCceeEEEEEE
Confidence 489999999999987 6 49999999999842 2 356898885 5999999999999997531 12457899999
Q ss_pred EecCCC-CCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASGYL-RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d~~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
||++.. .|++||++.|||.++..++. ...|++|..
T Consensus 77 ~D~d~~~~dd~IG~~~l~l~~~~~~~~----~~~w~~L~~ 112 (120)
T cd08395 77 KDYCFARDDRLVGVTVLQLRDIAQAGS----CACWLPLGR 112 (120)
T ss_pred EEecccCCCCEEEEEEEEHHHCcCCCc----EEEEEECcC
Confidence 999854 58999999999999986653 457888854
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.5e-19 Score=141.58 Aligned_cols=119 Identities=18% Similarity=0.225 Sum_probs=98.6
Q ss_pred CcccEEEEEEEeeeCCCCCCCC----------CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCC
Q 047341 1 MATQILEIILISAQGLKSPSSK----------MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSE 70 (254)
Q Consensus 1 M~~g~L~V~VisA~~L~~~~d~----------~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~ 70 (254)
|-.|.|+|+|++|++|++. +. .|.+||||+|.++++...+|++.++ +.||.|||+|.|.+..
T Consensus 1 ~~~g~l~V~v~~a~~L~~~-d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~------ 72 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPT-DWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVHN------ 72 (132)
T ss_pred CcceEEEEEEEEecCCCCC-CchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcCC------
Confidence 5678999999999999987 54 2579999999998766579998765 9999999999999974
Q ss_pred CcEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEe
Q 047341 71 TSAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLID 134 (254)
Q Consensus 71 ~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p 134 (254)
...|.|+|||.+ ...|++||.+.|+|.++..... .....|++|. ++|.|++.+.|..
T Consensus 73 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~--~~~~~w~~L~-----~~G~l~l~~~~~~ 130 (132)
T cd04014 73 GRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGS--GSFDLWVDLE-----PQGKLHVKIELKG 130 (132)
T ss_pred CCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCC--CcccEEEEcc-----CCcEEEEEEEEec
Confidence 689999999988 4578999999999999887411 1235788884 5799999999875
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.8e-19 Score=140.01 Aligned_cols=115 Identities=17% Similarity=0.257 Sum_probs=96.1
Q ss_pred cEEEEEEEeeeCCCCCCCC------CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 4 QILEIILISAQGLKSPSSK------MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~------~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
|+|+|+|++|++|++. +. .|.+||||+|.+++ ..++|++.++ +.||+|||.|.|.+... ....|.|+
T Consensus 1 g~l~v~v~~a~~L~~~-d~~~~~~~~g~~dPyv~v~~~~-~~~kT~~~~~-t~~P~W~e~f~~~v~~~----~~~~l~i~ 73 (121)
T cd08391 1 GVLRIHVIEAQDLVAK-DKFVGGLVKGKSDPYVIVRVGA-QTFKSKVIKE-NLNPKWNEVYEAVVDEV----PGQELEIE 73 (121)
T ss_pred CeEEEEEEEccCCccc-ccccccCCCCCcCCEEEEEECC-EeEEccccCC-CCCCcccceEEEEeCCC----CCCEEEEE
Confidence 6799999999999987 43 36899999999986 5679999875 99999999999999752 47899999
Q ss_pred EEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 78 IYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 78 V~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
|||++..+|++||.+.|++.++..... ...||+|.. ..+|+|++.+.|
T Consensus 74 v~d~~~~~~~~iG~~~i~l~~l~~~~~----~~~w~~L~~---~~~G~~~~~~~~ 121 (121)
T cd08391 74 LFDEDPDKDDFLGRLSIDLGSVEKKGF----IDEWLPLED---VKSGRLHLKLEW 121 (121)
T ss_pred EEecCCCCCCcEEEEEEEHHHhcccCc----cceEEECcC---CCCceEEEEEeC
Confidence 999995589999999999999876432 357888854 268999998764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-19 Score=144.08 Aligned_cols=104 Identities=18% Similarity=0.303 Sum_probs=85.9
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEe-cCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKV-TPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v-~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. + .+.+||||+|.+.+. .+.+|+++++ +.||+|||+|.|.+ +...+ ....|.|+
T Consensus 12 ~~~L~V~Vi~A~~L~~~-~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~~l--~~~~L~~~ 86 (122)
T cd08381 12 NGTLFVMVMHAKNLPLL-D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVEDL--QQRVLQVS 86 (122)
T ss_pred CCEEEEEEEEeeCCCCC-C-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChHHh--CCCEEEEE
Confidence 46899999999999998 7 889999999999752 4679999875 89999999999997 43222 46899999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||++ ..++++||++.|+|.++..... ...||+|
T Consensus 87 V~d~d~~~~~~~lG~~~i~l~~l~~~~~----~~~W~~L 121 (122)
T cd08381 87 VWSHDSLVENEFLGGVCIPLKKLDLSQE----TEKWYPL 121 (122)
T ss_pred EEeCCCCcCCcEEEEEEEeccccccCCC----ccceEEC
Confidence 99999 5579999999999999875532 3467765
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.9e-19 Score=140.26 Aligned_cols=116 Identities=22% Similarity=0.324 Sum_probs=95.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
.|+|+|++|++|+.. +..+.+||||+|.+.+. +.+|+++++ +.||.|||+|.|.+... ....|.|+|||++ .
T Consensus 1 ~L~v~vi~a~~L~~~-d~~~~~DPyv~v~~~~~-~~kT~v~~~-t~nP~Wne~f~f~~~~~----~~~~l~~~v~d~~~~ 73 (123)
T cd04025 1 RLRCHVLEARDLAPK-DRNGTSDPFVRVFYNGQ-TLETSVVKK-SCYPRWNEVFEFELMEG----ADSPLSVEVWDWDLV 73 (123)
T ss_pred CEEEEEEEeeCCCCC-CCCCCcCceEEEEECCE-EEeceeecC-CCCCccCcEEEEEcCCC----CCCEEEEEEEECCCC
Confidence 489999999999988 77889999999999754 579999875 89999999999999762 3678999999998 4
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeC------CCCCcceEEEEEEE
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR------PSGRFQGVLSIGSM 131 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~------~~g~~~G~I~lsl~ 131 (254)
..+++||.+.++|.++..... ...||.|.. ++++..|.|+|.|+
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~----~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAKQ----EEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred CCCcEeEEEEEEHHHcccCCC----CCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 568999999999999865432 245777764 25677899998763
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=138.58 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=96.9
Q ss_pred EEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-CCCCce
Q 047341 10 LISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YLRDYL 88 (254)
Q Consensus 10 VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~~~D~~ 88 (254)
|++|++|++ ..|.+||||+|.+++. +++|++.++ +.||+|||+|.|.+.... .....|.|+|||++ ..+|++
T Consensus 2 vi~a~~L~~---~~g~~Dpyv~v~~~~~-~~kT~v~~~-~~nP~Wne~f~f~~~~~~--~~~~~l~~~v~d~~~~~~d~~ 74 (127)
T cd08373 2 VVSLKNLPG---LKGKGDRIAKVTFRGV-KKKTRVLEN-ELNPVWNETFEWPLAGSP--DPDESLEIVVKDYEKVGRNRL 74 (127)
T ss_pred eEEeeCCcc---cCCCCCCEEEEEECCE-eeecceeCC-CcCCcccceEEEEeCCCc--CCCCEEEEEEEECCCCCCCce
Confidence 789999998 4688999999999765 579999875 899999999999997521 25789999999998 457899
Q ss_pred eEEEEEeCccccccCCCCCCeeEEEEeeCCCCC-cceEEEEEEEEEeCCC
Q 047341 89 IGTVRFLVSNISLSVATKTPSFTAFQIRRPSGR-FQGVLSIGSMLIDGSD 137 (254)
Q Consensus 89 LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~-~~G~I~lsl~f~p~~~ 137 (254)
||++.++|.++..+.. ...+++|..++++ ..|+|+++++|.|...
T Consensus 75 iG~~~~~l~~l~~~~~----~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 75 IGSATVSLQDLVSEGL----LEVTEPLLDSNGRPTGATISLEVSYQPPDG 120 (127)
T ss_pred EEEEEEEhhHcccCCc----eEEEEeCcCCCCCcccEEEEEEEEEeCCCC
Confidence 9999999999876442 4678999765554 5899999999998753
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.1e-19 Score=142.07 Aligned_cols=108 Identities=19% Similarity=0.370 Sum_probs=88.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKM-RRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|+||+.. +.. |.+||||+|.+.|. .+.||++.++ +.||+|||+|.|.++...+ ....|.|.
T Consensus 14 ~~~L~V~V~~a~nL~~~-d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~l--~~~~L~v~ 89 (128)
T cd08392 14 TSCLEITIKACRNLAYG-DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADLL--SSRQLQVS 89 (128)
T ss_pred CCEEEEEEEecCCCCcc-CCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHHh--CCcEEEEE
Confidence 57899999999999988 654 89999999999754 3679999875 9999999999999976433 46799999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||.+ ..++++||++.|+|.++..... ......||+|
T Consensus 90 V~~~~~~~~~~~lG~~~i~L~~~~~~~~-~~~~~~W~~l 127 (128)
T cd08392 90 VWHSRTLKRRVFLGEVLIPLADWDFEDT-DSQRFLWYPL 127 (128)
T ss_pred EEeCCCCcCcceEEEEEEEcCCcccCCC-CccccceEEC
Confidence 99998 5678999999999999854431 1234678876
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.5e-19 Score=140.65 Aligned_cols=92 Identities=15% Similarity=0.319 Sum_probs=79.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.+.|.|+|++|++|+ . + |.+||||+|.+.+. .+.+|+|.++ ++||+|||+|.|.|+.+.+ +...|.|.||
T Consensus 13 ~~~L~V~vikA~~L~-~-~--g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l--~~~tL~~~V~ 85 (118)
T cd08677 13 KAELHVNILEAENIS-V-D--AGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEES--LDGTLTLTLR 85 (118)
T ss_pred CCEEEEEEEEecCCC-C-C--CCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHh--CCcEEEEEEE
Confidence 478999999999999 3 2 56999999999752 5779999876 9999999999999987654 6889999999
Q ss_pred ecC-CCCCceeEEEEEeCccccc
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISL 101 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~ 101 (254)
|+| ++++++||++.++++++..
T Consensus 86 d~Drfs~~d~IG~v~l~l~~~~~ 108 (118)
T cd08677 86 CCDRFSRHSTLGELRLKLADVSM 108 (118)
T ss_pred eCCCCCCCceEEEEEEccccccC
Confidence 999 6789999999999998633
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-18 Score=138.74 Aligned_cols=126 Identities=21% Similarity=0.294 Sum_probs=97.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecC-----CCccCCCcEEEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTP-----EFLSSETSAISVEIY 79 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~-----~~l~~~~~~L~veV~ 79 (254)
.|+|+|++|++|+.. +..|.+||||+|.+.+. +.+|++.++ +.||+|||.|.|.+.. ..+......|.|+||
T Consensus 2 ~l~v~V~~a~~L~~~-d~~g~~dpyv~v~~~~~-~~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~ 78 (135)
T cd04017 2 QLRAYIYQARDLLAA-DKSGLSDPFARVSFLNQ-SQETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELF 78 (135)
T ss_pred EEEEEEEEeecCcCC-CCCCCCCCEEEEEECCe-eeEeeeEcC-CCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEE
Confidence 589999999999998 88899999999999754 679999875 9999999999998532 001112367999999
Q ss_pred ecC-CCCCceeEEEEE-eCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 80 ASG-YLRDYLIGTVRF-LVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 80 D~d-~~~D~~LG~~~I-pL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
|++ ..+|++||++.+ |+..+... ..+.....|++|.. .+..+|+|.+++.+++.
T Consensus 79 d~d~~~~d~~iG~~~i~~~~~~~~~-~~~~~~~~W~~L~~-~~~~~Geil~~~~~~~~ 134 (135)
T cd04017 79 DQDSVGKDEFLGRSVAKPLVKLDLE-EDFPPKLQWFPIYK-GGQSAGELLAAFELIEV 134 (135)
T ss_pred eCcCCCCCccceEEEeeeeeecccC-CCCCCCceEEEeec-CCCchhheeEEeEEEEe
Confidence 999 456899999987 54444332 12334568999964 56789999999999864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=139.83 Aligned_cols=106 Identities=17% Similarity=0.353 Sum_probs=86.7
Q ss_pred cccEEEEEEEeeeCCCCCCCC-CCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSK-MRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~-~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
..+.|.|+|++|+||+.. +. .|.+||||+|.+.+. .+.||+++++ +.||+|||+|.|.++.+.+ ....|.|
T Consensus 13 ~~~~L~V~Vi~a~~L~~~-~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~l--~~~~L~~ 88 (125)
T cd04029 13 KTQSLNVHVKECRNLAYG-DEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQL--ETRTLQL 88 (125)
T ss_pred CCCeEEEEEEEecCCCcc-CCCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHHh--CCCEEEE
Confidence 357899999999999987 44 588999999999652 3569999875 8999999999999976432 4678999
Q ss_pred EEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
+|||++ ..++++||++.|+|.++..... ...||+|
T Consensus 89 ~V~d~~~~~~~~~lG~~~i~l~~~~~~~~----~~~w~~l 124 (125)
T cd04029 89 SVWHYDRFGRNTFLGEVEIPLDSWNFDSQ----HEECLPL 124 (125)
T ss_pred EEEECCCCCCCcEEEEEEEeCCcccccCC----cccEEEC
Confidence 999999 5678999999999999866543 3467776
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-19 Score=140.34 Aligned_cols=105 Identities=21% Similarity=0.324 Sum_probs=86.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKM-RRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|+||+.. +.. |.+||||+|.+.+. .+.+|+++++ +.||+|||+|.|.++...+ ....|.|+
T Consensus 14 ~~~L~V~vi~a~~L~~~-d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l--~~~~L~~~ 89 (125)
T cd08393 14 LRELHVHVIQCQDLAAA-DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREEL--PTRVLNLS 89 (125)
T ss_pred CCEEEEEEEEeCCCCCc-CCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHh--CCCEEEEE
Confidence 46899999999999998 665 89999999999642 3569999875 8999999999999975333 46799999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||.+ ..++++||++.|+|.++..... ...||+|
T Consensus 90 V~d~~~~~~~~~iG~~~i~L~~~~~~~~----~~~W~~L 124 (125)
T cd08393 90 VWHRDSLGRNSFLGEVEVDLGSWDWSNT----QPTWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeEEEEEecCccccCCC----CcceEEC
Confidence 99998 5578999999999999855432 3467765
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=139.12 Aligned_cols=101 Identities=22% Similarity=0.387 Sum_probs=84.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
++.|.|+|++|++|... + ..||||+|.+++ .+.+|++.+ +.||.|||.|.|.+.. ....|.|+|||++
T Consensus 1 m~~L~V~Vv~Ar~L~~~-~---~~dPYV~Ik~g~-~k~kT~v~~--~~nP~WnE~F~F~~~~-----~~~~L~v~V~dkd 68 (127)
T cd08394 1 MSLLCVLVKKAKLDGAP-D---KFNTYVTLKVQN-VKSTTIAVR--GSQPCWEQDFMFEINR-----LDLGLVIELWNKG 68 (127)
T ss_pred CceEEEEEEEeeCCCCC-C---CCCCeEEEEECC-EEeEeeECC--CCCCceeeEEEEEEcC-----CCCEEEEEEEeCC
Confidence 46899999999999775 3 458999999965 577998885 3699999999999976 3566999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
..+|++||++.|||+++..+.. .....||+|..
T Consensus 69 ~~~DD~lG~v~i~L~~v~~~~~--~~~~~Wy~L~~ 101 (127)
T cd08394 69 LIWDTLVGTVWIPLSTIRQSNE--EGPGEWLTLDS 101 (127)
T ss_pred CcCCCceEEEEEEhHHcccCCC--CCCCccEecCh
Confidence 7799999999999999987754 33367898864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=133.79 Aligned_cols=113 Identities=19% Similarity=0.342 Sum_probs=94.7
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-CC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YL 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~~ 84 (254)
|+|+|++|++|+.. +..+.+||||+|.+++....+|+++.+ +.||+|||+|.|.+... ....|.|+|||++ ..
T Consensus 1 l~v~vi~a~~L~~~-~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~----~~~~l~~~v~d~~~~~ 74 (115)
T cd04040 1 LTVDVISAENLPSA-DRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSR----VRAVLKVEVYDWDRGG 74 (115)
T ss_pred CEEEEEeeeCCCCC-CCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccC----CCCEEEEEEEeCCCCC
Confidence 68999999999988 678899999999998766679999865 99999999999999752 3689999999998 45
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEE
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSI 128 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~l 128 (254)
++++||++.+++.++..+.. ...+++|...++...|.|.+
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~----~~~~~~L~~~g~~~~~~~~~ 114 (115)
T cd04040 75 KDDLLGSAYIDLSDLEPEET----TELTLPLDGQGGGKLGAVFL 114 (115)
T ss_pred CCCceEEEEEEHHHcCCCCc----EEEEEECcCCCCccCceEEc
Confidence 78999999999999876432 46788887666677887754
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-18 Score=141.76 Aligned_cols=106 Identities=20% Similarity=0.385 Sum_probs=87.2
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|+||....+..|.+||||++.+.+. .+.||+++++ ++||+|||+|.|.+.. ....|.|+|
T Consensus 28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l-----~~~~L~v~V 101 (146)
T cd04028 28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSP-----TGKTLQVIV 101 (146)
T ss_pred CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcC-----CCCEEEEEE
Confidence 47899999999999876235688999999999653 3679999875 9999999999999973 588999999
Q ss_pred E-ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 79 Y-ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 79 ~-D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
| |.+ ..++++||++.|+|+++..... ...||+|..+
T Consensus 102 ~~d~~~~~~~~~iG~~~i~L~~l~~~~~----~~~Wy~L~~~ 139 (146)
T cd04028 102 WGDYGRMDKKVFMGVAQILLDDLDLSNL----VIGWYKLFPT 139 (146)
T ss_pred EeCCCCCCCCceEEEEEEEcccccCCCC----ceeEEecCCc
Confidence 9 566 4578999999999999854432 3579998753
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=136.28 Aligned_cols=112 Identities=22% Similarity=0.351 Sum_probs=92.4
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY- 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~- 83 (254)
.|+|+|++|++|+.. +..|..||||+|.+++ .+.+|+++++ +.||.|||.|.|.+.. ....|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~-d~~g~~DPyv~v~~~~-~~~kT~~v~~-t~~P~Wne~f~f~~~~-----~~~~l~i~v~d~d~~ 73 (127)
T cd04027 2 KISITVVCAQGLIAK-DKTGTSDPYVTVQVGK-TKKRTKTIPQ-NLNPVWNEKFHFECHN-----SSDRIKVRVWDEDDD 73 (127)
T ss_pred eEEEEEEECcCCcCC-CCCCCcCcEEEEEECC-EeeecceecC-CCCCccceEEEEEecC-----CCCEEEEEEEECCCC
Confidence 689999999999998 7889999999999965 4679998875 8999999999999865 35689999999873
Q ss_pred -----------CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEE
Q 047341 84 -----------LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGS 130 (254)
Q Consensus 84 -----------~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl 130 (254)
..+++||.+.|++.++... ...||.|... .+..+|+|.+++
T Consensus 74 ~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~------~~~w~~L~~~~~~~~~~G~i~~~~ 127 (127)
T cd04027 74 IKSRLKQKFTRESDDFLGQTIIEVRTLSGE------MDVWYNLEKRTDKSAVSGAIRLHI 127 (127)
T ss_pred cccccceeccccCCCcceEEEEEhHHccCC------CCeEEECccCCCCCcEeEEEEEEC
Confidence 3589999999999887422 2478888643 346899999874
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-18 Score=136.22 Aligned_cols=98 Identities=22% Similarity=0.408 Sum_probs=82.2
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
|.|+|+|++|++|++. +..+.+||||+|++.+. ..+|++.++++.||+|||.|.|.+..... .....|.|+|||.+
T Consensus 1 g~L~V~V~~A~~L~~~-~~~~~~dpyv~v~~~~~-~~~T~~~~~~t~nP~Wne~f~f~v~~~~~-~~~~~l~v~V~d~~~ 77 (124)
T cd04049 1 GTLEVLLISAKGLQDT-DFLGKIDPYVIIQCRTQ-ERKSKVAKGDGRNPEWNEKFKFTVEYPGW-GGDTKLILRIMDKDN 77 (124)
T ss_pred CeEEEEEEecCCCCCC-CCCCCcCceEEEEECCE-eeeeeEcCCCCCCCcccceEEEEecCccc-CCCCEEEEEEEECcc
Confidence 6899999999999988 77889999999999755 45888876568999999999999986310 12578999999998
Q ss_pred CCCCceeEEEEEeCccccccCC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVA 104 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~ 104 (254)
..+|++||++.|+|.++...+.
T Consensus 78 ~~~d~~iG~~~i~l~~l~~~~~ 99 (124)
T cd04049 78 FSDDDFIGEATIHLKGLFEEGV 99 (124)
T ss_pred CCCCCeEEEEEEEhHHhhhCCC
Confidence 5579999999999999886543
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-18 Score=134.36 Aligned_cols=95 Identities=16% Similarity=0.249 Sum_probs=80.2
Q ss_pred cEEEEEEEeeeCCCCCCCCC----CCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKM----RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~----G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
|+|.|+|++|++|+.. +.. +.+||||+|.+++ .++||+++++ +.||+|||.|.|.+.... ....|.|+||
T Consensus 1 g~l~v~v~~A~~L~~~-~~~~~~~~~~DPYv~v~~~~-~~~kT~v~~~-t~nPvWne~f~f~v~~~~---~~~~L~~~V~ 74 (108)
T cd04039 1 GVVFMEIKSITDLPPL-KNMTRTGFDMDPFVIISFGR-RVFRTSWRRH-TLNPVFNERLAFEVYPHE---KNFDIQFKVL 74 (108)
T ss_pred CEEEEEEEeeeCCCCc-cccCCCCCccCceEEEEECC-EeEeeeeecC-CCCCcccceEEEEEeCcc---CCCEEEEEEE
Confidence 6899999999999987 422 3589999999964 4679999976 899999999999986532 3568999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVA 104 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~ 104 (254)
|++ ..+|++||++.++|.++..+..
T Consensus 75 D~d~~~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 75 DKDKFSFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred ECCCCCCCcceEEEEEEHHHHHhhCC
Confidence 999 5679999999999999987664
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-18 Score=136.11 Aligned_cols=106 Identities=25% Similarity=0.367 Sum_probs=88.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
.+.|.|+|++|++|+.. +..|.+||||+|.+.+ ....+|++.++ +.||+|||+|.|.+....+ ....|.|+|||
T Consensus 15 ~~~L~V~v~~a~~L~~~-d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~i~V~d 90 (124)
T cd08387 15 MGILNVKLIQARNLQPR-DFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQEL--PKRTLEVLLYD 90 (124)
T ss_pred CCEEEEEEEEeeCCCCC-CCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHh--CCCEEEEEEEE
Confidence 47899999999999988 7889999999999953 45679999875 9999999999999876322 35789999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
++ ..+|++||++.|+|+++..+.. ...||.|.
T Consensus 91 ~~~~~~~~~iG~~~i~l~~~~~~~~----~~~W~~l~ 123 (124)
T cd08387 91 FDQFSRDECIGVVELPLAEVDLSEK----LDLWRKIQ 123 (124)
T ss_pred CCCCCCCceeEEEEEecccccCCCC----cceEEECc
Confidence 98 4579999999999999875543 35688764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-18 Score=133.30 Aligned_cols=102 Identities=19% Similarity=0.309 Sum_probs=86.4
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL 84 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~ 84 (254)
.|.|+|++|++|+.. +..+.+||||+|.+++ ++.+|++.++ +.||+|||.|.|.+... ....|.|+|||.+.
T Consensus 1 ~L~V~v~~A~~L~~~-~~~~~~dpyv~v~~~~-~~~kT~v~~~-t~nP~Wne~f~f~v~~~----~~~~l~v~v~d~~~- 72 (105)
T cd04050 1 LLFVYLDSAKNLPLA-KSTKEPSPYVELTVGK-TTQKSKVKER-TNNPVWEEGFTFLVRNP----ENQELEIEVKDDKT- 72 (105)
T ss_pred CEEEEEeeecCCCCc-ccCCCCCcEEEEEECC-EEEeCccccC-CCCCcccceEEEEeCCC----CCCEEEEEEEECCC-
Confidence 488999999999988 7789999999999986 5679999864 89999999999999863 36789999999886
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|++||++.|+|.++..... .....||+|..
T Consensus 73 -~~~iG~~~i~l~~l~~~~~--~~~~~w~~L~~ 102 (105)
T cd04050 73 -GKSLGSLTLPLSELLKEPD--LTLDQPFPLDN 102 (105)
T ss_pred -CCccEEEEEEHHHhhcccc--ceeeeeEecCC
Confidence 8999999999999876541 23467888864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=139.05 Aligned_cols=106 Identities=16% Similarity=0.216 Sum_probs=87.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|+||+.. +..|.+||||++.+.|. .+.+|++.++ +.||+|||+|.|+|+.+.+ ....|.|.
T Consensus 13 ~~~L~V~V~~arnL~~~-~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~L--~~~~L~~~ 88 (124)
T cd08680 13 DSSLVISVEQLRNLSAL-SIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTKL--YQKTLQVD 88 (124)
T ss_pred CCEEEEEEeEecCCccc-ccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHHh--hcCEEEEE
Confidence 46899999999999998 77789999999999753 3689999876 9999999999999987544 67899999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
||+.+ ..++++||++.|+|.++..... ....||.|
T Consensus 89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~---~~~~Wy~l 124 (124)
T cd08680 89 VCSVGPDQQEECLGGAQISLADFESSEE---MSTKWYNL 124 (124)
T ss_pred EEeCCCCCceeEEEEEEEEhhhccCCCc---cccccccC
Confidence 99998 4578999999999999854432 12456543
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-18 Score=134.58 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=80.6
Q ss_pred cEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 4 QILEIILISAQGLKSPSSKM-RRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
|+|+|+|++|++|+.. +.. +.+||||+|.+.+ ....+|+++++ ++||+|||.|.|.+....+ .....|.|+|||
T Consensus 1 G~L~V~v~~a~~L~~~-d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~-~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKA-DFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEV-KAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcc-cCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhc-cCCCEEEEEEEe
Confidence 6899999999999998 777 8999999999954 34679999876 8999999999998865211 125789999999
Q ss_pred cC-CCCCceeEEEEEeCcccccc
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~ 102 (254)
++ ...|++||++.+++.++...
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~~~ 100 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELIED 100 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHhcC
Confidence 99 55789999999999998743
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-17 Score=131.57 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=96.0
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|.|+|++|++|+.. +..+.+||||+|.+.+. ...+|++.++ +.||.|||+|.|.+... ....|.|+|||++
T Consensus 2 ~~~V~v~~a~~L~~~-~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~----~~~~L~i~v~d~d 75 (126)
T cd04043 2 LFTIRIVRAENLKAD-SSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAG----EPLWISATVWDRS 75 (126)
T ss_pred EEEEEEEEeECCCCC-CCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCC----CCCEEEEEEEECC
Confidence 689999999999998 78899999999998643 3569999875 89999999999999763 3678999999999
Q ss_pred C-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 83 Y-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 83 ~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
. ..+++||++.++|.++..... +.....|+.|. .+|.|++.+.+...
T Consensus 76 ~~~~~~~iG~~~i~l~~~~~~~~-~~~~~~w~~l~-----~~g~i~l~~~~~~~ 123 (126)
T cd04043 76 FVGKHDLCGRASLKLDPKRFGDD-GLPREIWLDLD-----TQGRLLLRVSMEGE 123 (126)
T ss_pred CCCCCceEEEEEEecCHHHcCCC-CCCceEEEEcC-----CCCeEEEEEEEeee
Confidence 4 478999999999987644321 22345788874 26889999988754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=8e-18 Score=134.20 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=88.3
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
|.|+|+|++|++|++. +..+.+||||+|.+++..+.+|++.++ +.||.|||.|.|.+.. ....|.|+|||++
T Consensus 1 g~L~V~Vi~a~~L~~~-d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~-----~~~~L~v~v~d~~~ 73 (120)
T cd04045 1 GVLRLHIRKANDLKNL-EGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTS-----PNQKITLEVMDYEK 73 (120)
T ss_pred CeEEEEEEeeECCCCc-cCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecC-----CCCEEEEEEEECCC
Confidence 6899999999999998 788999999999998766779988765 9999999999999875 3679999999998
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
...|++||++.++|.++..... ..||.+.+.
T Consensus 74 ~~~d~~IG~~~~~l~~l~~~~~-----~~~~~~~~~ 104 (120)
T cd04045 74 VGKDRSLGSVEINVSDLIKKNE-----DGKYVEYDD 104 (120)
T ss_pred CCCCCeeeEEEEeHHHhhCCCC-----CceEEecCC
Confidence 5578999999999999987632 467777653
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-18 Score=135.16 Aligned_cols=105 Identities=24% Similarity=0.346 Sum_probs=86.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+.+. .+.+|++.++ +.||+|||.|.|.+....+ ....|.|+|||
T Consensus 15 ~~~L~V~v~~a~~L~~~-d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~V~d 90 (124)
T cd08385 15 SNQLTVGIIQAADLPAM-DMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSEL--GNKTLVFSVYD 90 (124)
T ss_pred CCEEEEEEEEeeCCCCc-cCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHh--CCCEEEEEEEe
Confidence 47899999999999988 78889999999999653 4679998865 8999999999999875222 35789999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
++ +.++++||++.|+|.++..+.. ...|++|
T Consensus 91 ~d~~~~~~~lG~~~i~l~~~~~~~~----~~~W~~l 122 (124)
T cd08385 91 FDRFSKHDLIGEVRVPLLTVDLGHV----TEEWRDL 122 (124)
T ss_pred CCCCCCCceeEEEEEecCcccCCCC----cceEEEc
Confidence 98 5578999999999999865432 3467765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-18 Score=140.81 Aligned_cols=106 Identities=21% Similarity=0.300 Sum_probs=82.6
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCC-----------CccC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPE-----------FLSS 69 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~-----------~l~~ 69 (254)
.|.|+|++|++|... .|.+||||+|.+.+. .+.+|+++++ +.||+|||+|.|.+... .-..
T Consensus 1 kL~V~Vi~ArnL~~~---~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~ 76 (148)
T cd04010 1 KLSVRVIECSDLALK---NGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDA 76 (148)
T ss_pred CEEEEEEeCcCCCCC---CCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccccccccCCcccc
Confidence 489999999999873 588999999999763 4568999875 99999999999999510 0001
Q ss_pred CCcEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 70 ETSAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 70 ~~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
....|.|+|||++ ..+|+|||++.|+|.++..... ....||+|..
T Consensus 77 ~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~---~~~~W~~L~~ 122 (148)
T cd04010 77 EKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAG---SHQAWYFLQP 122 (148)
T ss_pred cEEEEEEEEEcCCCCCCCceeEEEEEecccccccCC---cCcceeecCC
Confidence 2467999999998 4579999999999999876511 1357888854
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.9e-18 Score=134.39 Aligned_cols=105 Identities=22% Similarity=0.286 Sum_probs=87.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+....+ ....|.|.|
T Consensus 15 ~~~L~V~vi~a~~L~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l--~~~~l~i~v 90 (127)
T cd04030 15 RQKLIVTVHKCRNLPPC-DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEEL--KRRTLDVAV 90 (127)
T ss_pred CCEEEEEEEEEECCCCc-cCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHh--cCCEEEEEE
Confidence 47899999999999998 7889999999999964 35679999875 8999999999999976322 357899999
Q ss_pred EecCC---CCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 79 YASGY---LRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 79 ~D~d~---~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
||.+. .+|++||++.|+|.++..+.. ...||.|
T Consensus 91 ~~~~~~~~~~~~~iG~~~i~l~~l~~~~~----~~~W~~L 126 (127)
T cd04030 91 KNSKSFLSREKKLLGQVLIDLSDLDLSKG----FTQWYDL 126 (127)
T ss_pred EECCcccCCCCceEEEEEEecccccccCC----ccceEEC
Confidence 99984 478999999999999865432 3567765
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=131.95 Aligned_cols=118 Identities=27% Similarity=0.340 Sum_probs=94.0
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
..|+|+|++|+ |... +..+.+||||+|.+++....+|++.++ +.||.|||.|.|.+.. ...|.|+|||++
T Consensus 2 ~~L~V~i~~a~-l~~~-~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~------~~~l~~~V~d~~~ 72 (125)
T cd04021 2 SQLQITVESAK-LKSN-SKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP------QSTLEFKVWSHHT 72 (125)
T ss_pred ceEEEEEEeeE-CCCC-CcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC------CCEEEEEEEeCCC
Confidence 46999999999 5544 457899999999998765779999865 9999999999999864 678999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCC-eeEEEEeeCC---CCCcceEEEEEE
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTP-SFTAFQIRRP---SGRFQGVLSIGS 130 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~-~~~~~~L~~~---~g~~~G~I~lsl 130 (254)
...|++||++.++|.++......... ...++++..+ ++...|+|.+.+
T Consensus 73 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 124 (125)
T cd04021 73 LKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL 124 (125)
T ss_pred CCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence 45789999999999998765431111 2357888654 347799999875
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-18 Score=136.17 Aligned_cols=103 Identities=17% Similarity=0.260 Sum_probs=83.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|+||++. + .|.+||||+|.+.+. .+.||++.++ +.||+|||+|.|.+....+ ...|.|.|
T Consensus 11 ~~~L~V~Vi~ar~L~~~-~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~~---~~~l~v~V 84 (119)
T cd08685 11 NRKLTLHVLEAKGLRST-N-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERDY---QKRLLVTV 84 (119)
T ss_pred CCEEEEEEEEEECCCCC-C-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHHh---CCEEEEEE
Confidence 46899999999999988 6 789999999999763 3568998865 9999999999999976332 35788999
Q ss_pred EecCC-C-CCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 79 YASGY-L-RDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 79 ~D~d~-~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
||.+. . ++++||.+.|||.++..+.. ...||.|
T Consensus 85 ~~~~~~~~~~~~lG~~~i~l~~~~~~~~----~~~Wy~l 119 (119)
T cd08685 85 WNKLSKSRDSGLLGCMSFGVKSIVNQKE----ISGWYYL 119 (119)
T ss_pred ECCCCCcCCCEEEEEEEecHHHhccCcc----ccceEeC
Confidence 99883 3 47899999999999974432 3467764
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.1e-17 Score=134.26 Aligned_cols=116 Identities=17% Similarity=0.269 Sum_probs=93.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc------------CeEEeEeecCCCCCCee-ceEEEEEecCCCccCCC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS------------TKLCTRVDRAGAESPIW-NEKFLFKVTPEFLSSET 71 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~------------~k~rTkv~k~gt~NP~W-NE~f~F~v~~~~l~~~~ 71 (254)
++.|++++|++|+ . +.+|++||||++.+.+. ++++|+++++ ++||+| ||+|.|.+.. +
T Consensus 2 ~~~~~~~~A~~L~-~-~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f~v~~------~ 72 (137)
T cd08691 2 SFSLSGLQARNLK-K-GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVFVGLP------T 72 (137)
T ss_pred EEEEEEEEeCCCC-C-ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEEEcCC------C
Confidence 4679999999998 5 67899999999999652 2679999875 899999 9999999964 5
Q ss_pred cEEEEEEEecCCC----CCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEE
Q 047341 72 SAISVEIYASGYL----RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGS 130 (254)
Q Consensus 72 ~~L~veV~D~d~~----~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl 130 (254)
..|.|+|||++.. .|++||.+.|||.++..+... .....+|++... .+...|+|.+.+
T Consensus 73 ~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~-~~~~~~~~l~k~~~~s~v~G~~~l~~ 136 (137)
T cd08691 73 DVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAI-GDQELSYTLGRRTPTDHVSGQLTFRF 136 (137)
T ss_pred CEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccC-CceEEEEECCcCCCCCcEEEEEEEEe
Confidence 6899999997632 279999999999999876532 225678888643 457899998875
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-18 Score=131.97 Aligned_cols=106 Identities=21% Similarity=0.273 Sum_probs=86.3
Q ss_pred EEEEEEeeeCCCCCCC-CCCCCCeEEEEEECCcCeEEeEeecCCCCCCee-ceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 6 LEIILISAQGLKSPSS-KMRRMQTYALVWIDSSTKLCTRVDRAGAESPIW-NEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d-~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~W-NE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|+|+|++|++|+.. + ..|.+||||+|.+++ .++||+++++ +.||+| ||.|.|.+....+ ....|.|+|||++.
T Consensus 1 l~V~v~~a~~L~~~-d~~~~~~Dpyv~v~~~~-~~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l--~~~~l~i~V~d~d~ 75 (110)
T cd08688 1 LKVRVVAARDLPVM-DRSSDLTDAFVEVKFGS-TTYKTDVVKK-SLNPVWNSEWFRFEVDDEEL--QDEPLQIRVMDHDT 75 (110)
T ss_pred CEEEEEEEECCCcc-ccCCCCCCceEEEEECC-eeEecceecC-CCCCcccCcEEEEEcChHHc--CCCeEEEEEEeCCC
Confidence 68999999999987 5 468899999999976 5789999875 899999 9999999976322 35789999999994
Q ss_pred -CCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 84 -LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 84 -~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
.+|++||++.++|.++..... ......||+|.+
T Consensus 76 ~~~~~~iG~~~~~l~~l~~~~~-~~~~~~w~~l~~ 109 (110)
T cd08688 76 YSANDAIGKVYIDLNPLLLKDS-VSQISGWFPIYD 109 (110)
T ss_pred CCCCCceEEEEEeHHHhcccCC-ccccCCeEEccc
Confidence 568999999999999887421 122457888753
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.3e-18 Score=132.76 Aligned_cols=105 Identities=20% Similarity=0.389 Sum_probs=85.7
Q ss_pred ccEEEEEEEeeeCCCCCCC-CCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSS-KMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d-~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. + ..+.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|+
T Consensus 13 ~~~L~V~v~~a~~L~~~-~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~l--~~~~l~i~ 88 (123)
T cd08521 13 TGSLEVHIKECRNLAYA-DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQL--ETRTLQLS 88 (123)
T ss_pred CCEEEEEEEEecCCCCc-CCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHHh--CCCEEEEE
Confidence 57899999999999988 6 6789999999998543 4579998764 9999999999999876322 36789999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||.+ ..++++||++.++|.++..+.. ...||+|
T Consensus 89 v~d~~~~~~~~~iG~~~i~l~~l~~~~~----~~~w~~l 123 (123)
T cd08521 89 VWHHDRFGRNTFLGEVEIPLDSWDLDSQ----QSEWYPL 123 (123)
T ss_pred EEeCCCCcCCceeeEEEEecccccccCC----CccEEEC
Confidence 99998 5578999999999999864432 3567765
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-17 Score=133.76 Aligned_cols=107 Identities=21% Similarity=0.309 Sum_probs=84.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEE-EecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKM-RRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLF-KVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F-~v~~~~l~~~~~~L~veV 78 (254)
...|+|+|++|++|+.. +.. |.+||||+|.+.+ .++.||+++++ +.||+|||+|.| .++...+ ....|.|+|
T Consensus 15 ~~~L~V~Vi~a~~L~~~-~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~--~~~~L~~~V 90 (128)
T cd08388 15 KKALLVNIIECRDLPAM-DEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQL--QDLSLHFAV 90 (128)
T ss_pred CCEEEEEEEEeECCCCC-CCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHh--CCCEEEEEE
Confidence 46899999999999988 665 8999999999964 34669999876 999999999999 4654221 356899999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
||++ ..+|++||++.|+|.++..... .....|+++
T Consensus 91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~--~~~~~~~~~ 126 (128)
T cd08388 91 LSFDRYSRDDVIGEVVCPLAGADLLNE--GELLVSREI 126 (128)
T ss_pred EEcCCCCCCceeEEEEEeccccCCCCC--ceEEEEEec
Confidence 9998 5679999999999999865532 123455554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=135.57 Aligned_cols=125 Identities=18% Similarity=0.282 Sum_probs=97.4
Q ss_pred EEEEEEEeeeC--CCCCCCCCCCCCeEEEEEE----CCcCeEEeEeecCCCCCCeeceEEEEEecCCC---c-cCCCcEE
Q 047341 5 ILEIILISAQG--LKSPSSKMRRMQTYALVWI----DSSTKLCTRVDRAGAESPIWNEKFLFKVTPEF---L-SSETSAI 74 (254)
Q Consensus 5 ~L~V~VisA~~--L~~~~d~~G~~DPYV~V~l----~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~---l-~~~~~~L 74 (254)
..+|+|+.|.+ |+.. +..+.+||||++.+ ...++.||+++++ ++||+|||+|.|.|+... . ......|
T Consensus 3 ~~el~i~~~~~~~l~~~-~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L 80 (155)
T cd08690 3 SIELTIVRCIGIPLPSG-WNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRSFQRVFKRHGL 80 (155)
T ss_pred ceEEEEEEeeccccCCC-cCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccchhhhhccCCcE
Confidence 46788888888 4555 56788999999997 2346789999876 999999999999997631 0 0135679
Q ss_pred EEEEEecC-C-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 75 SVEIYASG-Y-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 75 ~veV~D~d-~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
.|+|||.+ + .+|++||++.|+|..+..... ...+++|.+......|.|++.++...+
T Consensus 81 ~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~----~~~~~~L~~~~k~~Gg~l~v~ir~r~p 139 (155)
T cd08690 81 KFEVYHKGGFLRSDKLLGTAQVKLEPLETKCE----IHESVDLMDGRKATGGKLEVKVRLREP 139 (155)
T ss_pred EEEEEeCCCcccCCCeeEEEEEEcccccccCc----ceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence 99999998 4 369999999999999866543 245888876556678899999998754
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.75 E-value=6e-17 Score=128.66 Aligned_cols=117 Identities=25% Similarity=0.344 Sum_probs=95.2
Q ss_pred cEEEEEEEeeeCCCCCCC--CCCCCCeEEEEEECC-----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 4 QILEIILISAQGLKSPSS--KMRRMQTYALVWIDS-----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d--~~G~~DPYV~V~l~~-----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
-.|+|+|++|++|+.. + ..+..||||+|++.+ ..+.+|+++++++.||.|||+|.|.+... ....|.|
T Consensus 2 ~~l~v~vi~a~~L~~~-~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~----~~~~l~~ 76 (128)
T cd00275 2 LTLTIKIISGQQLPKP-KGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP----ELAFLRF 76 (128)
T ss_pred eEEEEEEEeeecCCCC-CCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC----CeEEEEE
Confidence 3689999999999987 5 578899999999953 34579998876556999999999998752 3467999
Q ss_pred EEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC--CcceEEEEEEEE
Q 047341 77 EIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG--RFQGVLSIGSML 132 (254)
Q Consensus 77 eV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g--~~~G~I~lsl~f 132 (254)
+|||.+..++++||++.++|.++..+ ..+++|..++| ...|.|.+.+++
T Consensus 77 ~V~d~~~~~~~~iG~~~~~l~~l~~g-------~~~~~l~~~~~~~~~~~~l~v~~~~ 127 (128)
T cd00275 77 VVYDEDSGDDDFLGQACLPLDSLRQG-------YRHVPLLDSKGEPLELSTLFVHIDI 127 (128)
T ss_pred EEEeCCCCCCcEeEEEEEEhHHhcCc-------eEEEEecCCCCCCCcceeEEEEEEE
Confidence 99999855899999999999998543 35788887666 457899988876
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.9e-17 Score=131.40 Aligned_cols=104 Identities=17% Similarity=0.265 Sum_probs=83.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecC-CCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTP-EFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~-~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|++|+.. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+.. ..+ ....|.|+
T Consensus 15 ~~~L~V~vi~a~~L~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~l~~~ 90 (125)
T cd04031 15 TSQLIVTVLQARDLPPR-DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRETL--KERTLEVT 90 (125)
T ss_pred CCEEEEEEEEecCCCCc-CCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHHh--CCCEEEEE
Confidence 57899999999999998 7788999999999975 24668999875 9999999999998643 111 35789999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||++ ..++++||++.++|.+..... ...||+|
T Consensus 91 V~d~~~~~~~~~iG~~~i~l~~~~~~~-----~~~W~~L 124 (125)
T cd04031 91 VWDYDRDGENDFLGEVVIDLADALLDD-----EPHWYPL 124 (125)
T ss_pred EEeCCCCCCCcEeeEEEEecccccccC-----CcceEEC
Confidence 99998 456899999999999833221 2467876
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=128.81 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=84.0
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-C
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-Y 83 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d-~ 83 (254)
.|+|+|++|++|+ .|.+||||+|+++++ +.+|++.++ +.||+|||+|.|.+...........|.|+|||.+ .
T Consensus 5 ~l~V~v~~a~~L~-----~~~~dpyv~v~~~~~-~~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~ 77 (111)
T cd04011 5 QVRVRVIEARQLV-----GGNIDPVVKVEVGGQ-KKYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL 77 (111)
T ss_pred EEEEEEEEcccCC-----CCCCCCEEEEEECCE-eeeeeEEec-cCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence 5899999999998 257999999999865 569998864 8999999999999754211112468999999998 5
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
.+|++||++.|+|+++..+.. ......||+|..|
T Consensus 78 ~~~~~iG~~~i~l~~v~~~~~-~~~~~~w~~L~~~ 111 (111)
T cd04011 78 RSDTLIGSFKLDVGTVYDQPD-HAFLRKWLLLTDP 111 (111)
T ss_pred ccCCccEEEEECCccccCCCC-CcceEEEEEeeCc
Confidence 578999999999999976643 2344678888653
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=132.58 Aligned_cols=105 Identities=24% Similarity=0.365 Sum_probs=86.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~veV~ 79 (254)
.+.|.|+|++|+||++. +..|..||||++.+.+. .+.+|++.+ + .||+|||+|.|+ ++...+ ....|.|+||
T Consensus 15 ~~~L~V~Vi~a~nL~~~-~~~~~~d~yVk~~llp~~~~~~kTkv~~-~-~nP~fnE~F~f~~i~~~~l--~~~~L~~~V~ 89 (124)
T cd08389 15 ARKLTVTVIRAQDIPTK-DRGGASSWQVHLVLLPSKKQRAKTKVQR-G-PNPVFNETFTFSRVEPEEL--NNMALRFRLY 89 (124)
T ss_pred CCEEEEEEEEecCCCch-hcCCCCCcEEEEEEccCCcceeeccccc-C-CCCcccCEEEECCCCHHHh--ccCEEEEEEE
Confidence 46899999999999998 77888999999888653 567998875 4 999999999998 765333 5788999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
|++ ..++++||++.|+|+++..... ...||.|.
T Consensus 90 ~~~~~~~~~~lG~~~i~L~~l~~~~~----~~~w~~L~ 123 (124)
T cd08389 90 GVERMRKERLIGEKVVPLSQLNLEGE----TTVWLTLE 123 (124)
T ss_pred ECCCcccCceEEEEEEeccccCCCCC----ceEEEeCC
Confidence 998 5679999999999999865432 46778763
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-17 Score=130.23 Aligned_cols=106 Identities=22% Similarity=0.368 Sum_probs=85.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecC-CCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTP-EFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~-~~l~~~~~~L~veV~ 79 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+.+ ..+.+|++.++ +.||+|||+|.|.+.+ +.+ ....|.|+||
T Consensus 15 ~~~L~v~v~~a~~L~~~-d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l--~~~~l~~~v~ 90 (125)
T cd08386 15 ESTLTLKILKAVELPAK-DFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKL--QQRVLYLQVL 90 (125)
T ss_pred CCEEEEEEEEecCCCCc-cCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHh--CCCEEEEEEE
Confidence 46899999999999988 7889999999999953 45679999875 8999999999998532 111 3568999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
|++ ..++++||++.|+|.++..+.. ...|+.|.
T Consensus 91 d~d~~~~~~~iG~~~i~l~~l~~~~~----~~~W~~l~ 124 (125)
T cd08386 91 DYDRFSRNDPIGEVSLPLNKVDLTEE----QTFWKDLK 124 (125)
T ss_pred eCCCCcCCcEeeEEEEecccccCCCC----cceEEecC
Confidence 998 5578999999999999875432 34677653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.2e-17 Score=156.43 Aligned_cols=141 Identities=21% Similarity=0.347 Sum_probs=112.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
...|.|+|++|++|+.. +..|.+||||++++.|. .+.+|+|.++ ++||+|||+|.|.|..+.+ ...+|.|.|||
T Consensus 166 ~~~L~V~V~qa~~Lp~~-d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l--~~~~L~l~V~~ 241 (421)
T KOG1028|consen 166 LNLLTVRVIQAHDLPAK-DRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEEL--SNRVLHLSVYD 241 (421)
T ss_pred CCEEEEEEEEecCCCcc-cCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHh--ccCEEEEEEEe
Confidence 46799999999999999 66788999999999875 5789999875 9999999999999876433 68999999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC---CCCcceEEEEEEEEEeCCC--------CCCcccccccc
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP---SGRFQGVLSIGSMLIDGSD--------LPAFDEVSAIG 148 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~---~g~~~G~I~lsl~f~p~~~--------~p~l~~~~~~~ 148 (254)
.| +.++++||++.++|..+..... ...|+.+... .....|+|.++++|.|... +..|..++..+
T Consensus 242 ~drfsr~~~iGev~~~l~~~~~~~~----~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~ 317 (421)
T KOG1028|consen 242 FDRFSRHDFIGEVILPLGEVDLLST----TLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGG 317 (421)
T ss_pred cCCcccccEEEEEEecCcccccccc----ceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCC
Confidence 99 7889999999999888755442 2456666542 2222389999999999865 44566666666
Q ss_pred ccc
Q 047341 149 YRD 151 (254)
Q Consensus 149 ~~d 151 (254)
..|
T Consensus 318 ~~d 320 (421)
T KOG1028|consen 318 LSD 320 (421)
T ss_pred CCC
Confidence 665
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=128.17 Aligned_cols=104 Identities=21% Similarity=0.312 Sum_probs=85.7
Q ss_pred CCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCcccc
Q 047341 21 SKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 21 d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~ 100 (254)
..+|.+||||+|.++++...+|+++++ +.||+|||.|.|.+.+. ....|.|+|||.+..+|++||.+.|+|.++.
T Consensus 8 ~~~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~----~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~ 82 (111)
T cd04052 8 SKTGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDR----RKSRVTVVVKDDRDRHDPVLGSVSISLNDLI 82 (111)
T ss_pred ccCCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCc----CCCEEEEEEEECCCCCCCeEEEEEecHHHHH
Confidence 467899999999998766679998765 89999999999999762 3678999999999449999999999999986
Q ss_pred ccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 101 LSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 101 ~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
.... ....||+|.. ..+|+|++++.|.|.
T Consensus 83 ~~~~---~~~~w~~L~~---~~~G~i~~~~~~~p~ 111 (111)
T cd04052 83 DATS---VGQQWFPLSG---NGQGRIRISALWKPV 111 (111)
T ss_pred hhhh---ccceeEECCC---CCCCEEEEEEEEecC
Confidence 5432 1247888853 568999999999873
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.7e-17 Score=162.35 Aligned_cols=127 Identities=18% Similarity=0.276 Sum_probs=104.9
Q ss_pred ccEEEEEEEeeeCCCCCCCC------------------------------------------CCCCCeEEEEEECCcCeE
Q 047341 3 TQILEIILISAQGLKSPSSK------------------------------------------MRRMQTYALVWIDSSTKL 40 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~------------------------------------------~G~~DPYV~V~l~~~~k~ 40 (254)
-|+|+|+|..|++|+++ +. .+++||||+|.+++++..
T Consensus 13 hg~l~~~i~ea~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~ 91 (868)
T PLN03008 13 HGDLDLKIVKARRLPNM-DMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA 91 (868)
T ss_pred ecccEEEEEEcccCCch-hHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence 37899999999999862 11 246799999999766667
Q ss_pred EeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC
Q 047341 41 CTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG 120 (254)
Q Consensus 41 rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g 120 (254)
||+|.++ +.||+|||.|.|.+.. ....|.|+|||.+..++++||++.|||.++..+.. ...|++|....+
T Consensus 92 RTrVi~n-~~NPvWNE~F~f~vah-----~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~----vd~Wl~Ll~~~~ 161 (868)
T PLN03008 92 RTRVLKN-SQEPLWDEKFNISIAH-----PFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGER----ISGWFPVLGASG 161 (868)
T ss_pred eEEeCCC-CCCCCcceeEEEEecC-----CCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCc----eEEEEEccccCC
Confidence 9999865 8999999999999986 36799999999997788999999999999887653 468899987654
Q ss_pred C---cceEEEEEEEEEeCCCCCC
Q 047341 121 R---FQGVLSIGSMLIDGSDLPA 140 (254)
Q Consensus 121 ~---~~G~I~lsl~f~p~~~~p~ 140 (254)
+ ..|.|+|+|.|.|....|.
T Consensus 162 kp~k~~~kl~v~lqf~pv~~~~~ 184 (868)
T PLN03008 162 KPPKAETAIFIDMKFTPFDQIHS 184 (868)
T ss_pred CCCCCCcEEEEEEEEEEcccccc
Confidence 3 4579999999999876553
|
|
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.2e-17 Score=131.86 Aligned_cols=99 Identities=18% Similarity=0.200 Sum_probs=81.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC------cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS------STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~------~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+...........|.|
T Consensus 15 ~~~L~V~Vi~A~~L~~~-~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~~~~~~~~l~~ 92 (133)
T cd04009 15 EQSLRVEILNARNLLPL-DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQCSVEGALLLF 92 (133)
T ss_pred CCEEEEEEEEeeCCCCc-CCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhhcccCCCEEEE
Confidence 46799999999999998 7789999999999963 24679999875 8999999999999875211113578999
Q ss_pred EEEecCC-CCCceeEEEEEeCccccccC
Q 047341 77 EIYASGY-LRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 77 eV~D~d~-~~D~~LG~~~IpL~~l~~~~ 103 (254)
+|||++. .+|++||++.|+|.++..-.
T Consensus 93 ~V~d~d~~~~d~~iG~~~i~l~~l~~~~ 120 (133)
T cd04009 93 TVKDYDLLGSNDFEGEAFLPLNDIPGVE 120 (133)
T ss_pred EEEecCCCCCCcEeEEEEEeHHHCCccc
Confidence 9999994 45999999999999987443
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-16 Score=126.81 Aligned_cols=105 Identities=21% Similarity=0.410 Sum_probs=85.4
Q ss_pred ccEEEEEEEeeeCCCCCCC-CCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSS-KMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d-~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.+.|.|+|++|++|+.. + ..+..||||+|.+.+ ....+|++.++ +.||+|||.|.|.++...+ ....|.|+||
T Consensus 13 ~~~L~V~v~~a~~L~~~-~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l--~~~~l~i~v~ 88 (123)
T cd08390 13 EEQLTVSLIKARNLPPR-TKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKEL--QRRTLRLSVY 88 (123)
T ss_pred CCEEEEEEEEecCCCCc-cCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHh--cccEEEEEEE
Confidence 57899999999999988 6 578999999999854 34568988875 9999999999999976321 3468999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|.+ ..++++||++.|+|.++..... ...|++|
T Consensus 89 d~~~~~~~~~iG~~~i~L~~l~~~~~----~~~w~~L 121 (123)
T cd08390 89 DVDRFSRHCIIGHVLFPLKDLDLVKG----GVVWRDL 121 (123)
T ss_pred ECCcCCCCcEEEEEEEeccceecCCC----ceEEEeC
Confidence 998 4468999999999999876543 2467776
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.4e-17 Score=133.46 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=85.7
Q ss_pred EEEEEEEeeeCCCCCCCCC--------------CCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCC
Q 047341 5 ILEIILISAQGLKSPSSKM--------------RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSE 70 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~--------------G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~ 70 (254)
.|.|+|++|++|+.+ +.. +.+||||+|.+++. +.+|+++++ +.||+|||+|.|++.... .
T Consensus 1 ~~~V~V~~A~dLp~~-d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~-~~kT~v~~~-t~nPvWNE~f~f~v~~p~---~ 74 (151)
T cd04018 1 RFIFKIYRAEDLPQM-DSGIMANVKKAFLGEKKELVDPYVEVSFAGQ-KVKTSVKKN-SYNPEWNEQIVFPEMFPP---L 74 (151)
T ss_pred CeEEEEEEeCCCCcc-ChhhhccceeccccCCCCCcCcEEEEEECCE-eeecceEcC-CCCCCcceEEEEEeeCCC---c
Confidence 478999999999998 644 36899999999876 569999875 899999999999975322 3
Q ss_pred CcEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCC---CeeEEEEeeC
Q 047341 71 TSAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKT---PSFTAFQIRR 117 (254)
Q Consensus 71 ~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~---~~~~~~~L~~ 117 (254)
...|.|+|||++ ..+|++||.+.|+|.++......+. ..+.|+.+..
T Consensus 75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 579999999999 4589999999999999876553221 2357888764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=130.16 Aligned_cols=120 Identities=24% Similarity=0.367 Sum_probs=97.3
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
..|.|.|++|++|+.. -+|||.|.+++....||++..+ +.||.|||.|.|.... ....|+|.||+.+
T Consensus 11 ~sL~v~V~EAk~Lp~~------~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~-----~~~~l~v~v~k~~~ 78 (146)
T cd04013 11 NSLKLWIIEAKGLPPK------KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLP-----PVSVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEccCCCCc------CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCC-----cccEEEEEEEEccC
Confidence 4689999999999876 3899999999887789999865 8999999999998654 3578999998654
Q ss_pred CC----CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCC----------cceEEEEEEEEEeCCCCC
Q 047341 83 YL----RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGR----------FQGVLSIGSMLIDGSDLP 139 (254)
Q Consensus 83 ~~----~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~----------~~G~I~lsl~f~p~~~~p 139 (254)
.. ++.+||.+.||+.++..+. ....||+|...++. ..+.|+++++|.+....|
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~----~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQ----FVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCC----cccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 22 5789999999999988543 34689999875443 347999999999875544
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.71 E-value=8e-17 Score=130.21 Aligned_cols=92 Identities=21% Similarity=0.292 Sum_probs=77.7
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+.+.|+|+|++|++|+. +..+.+||||+|.+++. +++|+++++ +.||+|||+|.|..... .....|.|+|||+
T Consensus 26 ~~~~L~V~V~~A~~L~~--d~~g~~DPYVkV~~~~~-~~kT~vi~~-t~nPvWNE~F~f~~~~~---~~~~~L~v~V~D~ 98 (127)
T cd04032 26 GLATLTVTVLRATGLWG--DYFTSTDGYVKVFFGGQ-EKRTEVIWN-NNNPRWNATFDFGSVEL---SPGGKLRFEVWDR 98 (127)
T ss_pred CcEEEEEEEEECCCCCc--CcCCCCCeEEEEEECCc-cccCceecC-CCCCcCCCEEEEecccC---CCCCEEEEEEEeC
Confidence 35899999999999984 56789999999999765 779999975 89999999999975321 1478999999999
Q ss_pred C-CCCCceeEEEEEeCcccc
Q 047341 82 G-YLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~ 100 (254)
+ ...|++||++.++|....
T Consensus 99 d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCeeEEEEEEecCCc
Confidence 9 558999999999998654
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.9e-17 Score=132.42 Aligned_cols=91 Identities=16% Similarity=0.373 Sum_probs=80.8
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
|.|+|+|++|++|+.. +. +.+||||+|.++++ +.+|++.++ +.||+|||.|.|.+.. +...|.|+|||++
T Consensus 2 G~L~V~Vi~a~nL~~~-d~-~~sDPYV~v~~g~~-~~kT~vvk~-t~nP~WnE~f~f~i~~-----~~~~l~~~V~D~d~ 72 (145)
T cd04038 2 GLLKVRVVRGTNLAVR-DF-TSSDPYVVLTLGNQ-KVKTRVIKK-NLNPVWNEELTLSVPN-----PMAPLKLEVFDKDT 72 (145)
T ss_pred eEEEEEEEeeECCCCC-CC-CCcCcEEEEEECCE-EEEeeeEcC-CCCCeecccEEEEecC-----CCCEEEEEEEECCC
Confidence 7899999999999987 66 89999999999754 679999875 9999999999999976 4789999999999
Q ss_pred CCCCceeEEEEEeCccccccC
Q 047341 83 YLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+.+|++||++.+++.++....
T Consensus 73 ~~~dd~iG~a~i~l~~l~~~~ 93 (145)
T cd04038 73 FSKDDSMGEAEIDLEPLVEAA 93 (145)
T ss_pred CCCCCEEEEEEEEHHHhhhhh
Confidence 667999999999999987654
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=133.55 Aligned_cols=101 Identities=21% Similarity=0.369 Sum_probs=83.5
Q ss_pred CcccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----------------------------CeEEeEeecCCCCCC
Q 047341 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----------------------------TKLCTRVDRAGAESP 52 (254)
Q Consensus 1 M~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----------------------------~k~rTkv~k~gt~NP 52 (254)
++...|+|+|++|++|.+. +..|.+||||+|.+.+. ...+|++.++ +.||
T Consensus 25 ~~~~~L~V~vi~a~~L~~~-d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP 102 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAK-DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQ-TLNP 102 (153)
T ss_pred CCeEEEEEEEEeccCCccc-CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecC-CCCC
Confidence 3568899999999999998 88899999999999642 2368888865 9999
Q ss_pred eeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 53 IWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 53 ~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
+|||+|.|.+... ....|.|+|||++ |++||++.|++.++.... ...||+|
T Consensus 103 ~WnE~F~f~v~~~----~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~~~-----~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEVEDV----SNDQLHLDIWDHD---DDFLGCVNIPLKDLPSCG-----LDSWFKL 153 (153)
T ss_pred ccccEEEEEeccC----CCCEEEEEEEecC---CCeEEEEEEEHHHhCCCC-----CCCeEeC
Confidence 9999999999652 4689999999987 899999999999987322 2456654
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=123.05 Aligned_cols=113 Identities=21% Similarity=0.300 Sum_probs=84.5
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC-
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL- 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~- 84 (254)
|+|+|++|++|+.. |.+||||+|.+++...++|++.++ .||.|||+|.|.+....+ ....|.|.|||.+..
T Consensus 2 L~v~vi~a~~l~~~----~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~--~~~~l~i~v~d~~~~~ 73 (117)
T cd08383 2 LRLRILEAKNLPSK----GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDV--TFFTLSFYNKDKRSKD 73 (117)
T ss_pred eEEEEEEecCCCcC----CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccc--cEEEEEEEEEecccCC
Confidence 78999999999864 789999999998765679998864 999999999999976321 246778888887733
Q ss_pred CCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEE
Q 047341 85 RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSML 132 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f 132 (254)
.+.++|. ++|..+..+. ....||+|... .+...|+|+|.++|
T Consensus 74 ~~~~~g~--v~l~~~~~~~----~~~~w~~L~~~~~~~~~~G~l~l~~~~ 117 (117)
T cd08383 74 RDIVIGK--VALSKLDLGQ----GKDEWFPLTPVDPDSEVQGSVRLRARY 117 (117)
T ss_pred CeeEEEE--EEecCcCCCC----cceeEEECccCCCCCCcCceEEEEEEC
Confidence 4555555 5555554432 23578888643 34669999999987
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-17 Score=132.07 Aligned_cols=92 Identities=21% Similarity=0.291 Sum_probs=78.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
...|.|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.|+...+ ....|.|.|
T Consensus 14 ~~~L~V~Vi~A~nL~~~-~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l--~~~~l~~~V 89 (136)
T cd08406 14 AERLTVVVVKARNLVWD-NGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVL--QDLSLRVTV 89 (136)
T ss_pred CCEEEEEEEEeeCCCCc-cCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHh--CCcEEEEEE
Confidence 46799999999999988 78899999999999653 2558888875 8999999999999986433 678999999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..++++||++.|+...
T Consensus 90 ~~~d~~~~~~~iG~v~lg~~~ 110 (136)
T cd08406 90 AESTEDGKTPNVGHVIIGPAA 110 (136)
T ss_pred EeCCCCCCCCeeEEEEECCCC
Confidence 9998 6789999999997653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.5e-17 Score=131.83 Aligned_cols=92 Identities=20% Similarity=0.348 Sum_probs=77.9
Q ss_pred ccEEEEEEEeeeCCCCCCC--CCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 3 TQILEIILISAQGLKSPSS--KMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d--~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
.+.|.|+|++|+||... + ..+.+||||+|.+.+. .+.||++.++ +.||+|||.|.|.++.+.+ ....|.|
T Consensus 14 ~~~L~V~V~karnL~~~-d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~L--~~~~L~~ 89 (138)
T cd08407 14 ANRLLVVVIKAKNLHSD-QLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSELL--AASSVEL 89 (138)
T ss_pred CCeEEEEEEEecCCCcc-ccCCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHHh--CccEEEE
Confidence 57899999999999988 5 2355899999999763 3568998875 9999999999999987543 5788999
Q ss_pred EEEecC-CCCCceeEEEEEeCcc
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~ 98 (254)
+|||++ +.++++||++.+++..
T Consensus 90 ~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 90 EVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred EEEeCCCCcCcceeceEEecCcC
Confidence 999999 6679999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=127.91 Aligned_cols=119 Identities=13% Similarity=0.135 Sum_probs=89.5
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC-eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSST-KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~-k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
+|+|.|++|++|++. +..|.+||||+|.+++.. ..+|.+.++ +.||+|||+|.|.+... ....|.|+|||++
T Consensus 1 ~lrV~Vi~a~~L~~~-d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~----~~~~L~~~V~d~d~ 74 (124)
T cd04037 1 LVRVYVVRARNLQPK-DPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLP----GNSILKISVMDYDL 74 (124)
T ss_pred CEEEEEEECcCCCCC-CCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCC----CCCEEEEEEEECCC
Confidence 489999999999998 788999999999997653 357777765 99999999999998642 4679999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
..+|++||++.|+|.+..-... +.++- ..++-...|.++...++.|.
T Consensus 75 ~~~dd~iG~~~i~l~~~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~ 121 (124)
T cd04037 75 LGSDDLIGETVIDLEDRFFSKH-----RATCG-LPPTYEESGPNQWRDSLKPS 121 (124)
T ss_pred CCCCceeEEEEEeecccccchH-----HHhcc-CCCcccccCceecCcccCcc
Confidence 4579999999999988653210 11111 11222356777777776654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-16 Score=128.10 Aligned_cols=92 Identities=14% Similarity=0.278 Sum_probs=78.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|++|++. +..|..||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 12 ~~~L~V~Vi~a~~L~~~-d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l--~~~~l~~~V 87 (133)
T cd08384 12 RRGLIVGIIRCVNLAAM-DANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDL--AKKTLEITV 87 (133)
T ss_pred CCEEEEEEEEEcCCCCc-CCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHh--CCCEEEEEE
Confidence 57899999999999998 78899999999999642 3579999875 9999999999999875322 357899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ...|++||++.|++..
T Consensus 88 ~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 88 WDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred EeCCCCCCccEEEEEEEecCC
Confidence 9998 4568999999999975
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-16 Score=132.23 Aligned_cols=97 Identities=18% Similarity=0.316 Sum_probs=80.4
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEec-CCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVT-PEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~-~~~l~~~~~~L~v 76 (254)
..+.|.|+|++|++|+.. +..+.+||||+|.+.+ ..++||+++++ +.||+|||+|.|.+. .+.+ ....|.|
T Consensus 25 ~~g~L~V~Vi~A~nL~~~-d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~~l--~~~~L~i 100 (162)
T cd04020 25 STGELHVWVKEAKNLPAL-KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPEDL--SQACLEL 100 (162)
T ss_pred CCceEEEEEEeeeCCCCC-CCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHHHh--CCCEEEE
Confidence 357899999999999998 7789999999999853 35679999876 899999999999853 2111 3568999
Q ss_pred EEEecC-CCCCceeEEEEEeCcccccc
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~l~~~ 102 (254)
+|||++ ..+|++||++.|++.++...
T Consensus 101 ~V~d~d~~~~d~~lG~v~i~l~~~~~~ 127 (162)
T cd04020 101 TVWDHDKLSSNDFLGGVRLGLGTGKSY 127 (162)
T ss_pred EEEeCCCCCCCceEEEEEEeCCccccC
Confidence 999998 45699999999999997644
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.7e-16 Score=128.58 Aligned_cols=93 Identities=22% Similarity=0.292 Sum_probs=79.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|+||+.. +..|..||||+|.+.+. .+.+|++.++ +.||+|||+|.|.++.+.+ ....|.|.
T Consensus 14 ~~~L~V~VikarnL~~~-~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~l--~~~~L~~~ 89 (138)
T cd08408 14 TGRLSVEVIKGSNFKNL-AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQL--SEVTLMFS 89 (138)
T ss_pred CCeEEEEEEEecCCCcc-ccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHHh--CccEEEEE
Confidence 57899999999999998 78899999999999652 2568999875 8999999999999986433 57799999
Q ss_pred EEecC-CCCCceeEEEEEeCccc
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l 99 (254)
|||.+ ..++++||++.|++...
T Consensus 90 V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 90 VYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred EEECCCCCCCcEEEEEEECCcCC
Confidence 99998 66899999999988643
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-16 Score=126.65 Aligned_cols=92 Identities=29% Similarity=0.390 Sum_probs=77.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|+||... + .+.+||||+|.+.+. .+.+|++.+ ++.||+|||.|.|.++.+.+ ....|.|+|
T Consensus 14 ~~~L~V~V~~a~nL~~~-~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~-~~~nP~fnE~F~f~i~~~~l--~~~~L~~~V 88 (137)
T cd08409 14 LNRLTVVVLRARGLRQL-D-HAHTSVYVKVSLMIHNKVVKTKKTEVVD-GAASPSFNESFSFKVTSRQL--DTASLSLSV 88 (137)
T ss_pred CCeEEEEEEEecCCCcc-c-CCCCCeEEEEEEEECCEEeeeeecccEe-CCCCCcccceEEEECCHHHh--CccEEEEEE
Confidence 46799999999999988 6 788999999999753 356898876 49999999999999986443 458999999
Q ss_pred EecC-CCCCceeEEEEEeCccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l 99 (254)
||.+ ..++++||++.|+....
T Consensus 89 ~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 89 MQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred EeCCCCCCcceEEEEEECCccc
Confidence 9998 66799999999986544
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.4e-16 Score=126.80 Aligned_cols=92 Identities=22% Similarity=0.320 Sum_probs=78.1
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 14 ~~~L~V~vi~a~~L~~~-d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~--~~~~l~~~v 89 (136)
T cd08404 14 TNRLTVVVLKARHLPKM-DVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEEL--EDISVEFLV 89 (136)
T ss_pred CCeEEEEEEEeeCCCcc-ccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHh--CCCEEEEEE
Confidence 46899999999999998 78899999999999642 2568888865 9999999999999975322 467899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..++++||++.|++..
T Consensus 90 ~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 90 LDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred EECCCCCCCccEEEEEECCcC
Confidence 9998 5578999999999987
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=126.51 Aligned_cols=92 Identities=20% Similarity=0.269 Sum_probs=77.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 14 ~~~l~V~Vi~a~~L~~~-d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l--~~~~l~~~v 89 (136)
T cd08402 14 AGKLTVVILEAKNLKKM-DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQI--QKVHLIVTV 89 (136)
T ss_pred CCeEEEEEEEeeCCCcc-cCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHHh--CCCEEEEEE
Confidence 47899999999999988 78899999999999532 3568888764 9999999999999875322 345899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..+|++||++.|++..
T Consensus 90 ~d~~~~~~~~~iG~~~i~~~~ 110 (136)
T cd08402 90 LDYDRIGKNDPIGKVVLGCNA 110 (136)
T ss_pred EeCCCCCCCceeEEEEECCcc
Confidence 9998 5578999999999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.2e-16 Score=126.82 Aligned_cols=93 Identities=22% Similarity=0.361 Sum_probs=78.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|++|+.. +..|..||||+|.+.+ ..+.+|++.++ +.||+|||+|.|.++.+.+ ....|.|+|
T Consensus 14 ~~~L~v~vi~a~~L~~~-~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~--~~~~l~~~v 89 (136)
T cd08405 14 ANRITVNIIKARNLKAM-DINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERL--RETTLIITV 89 (136)
T ss_pred CCeEEEEEEEeeCCCcc-ccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHh--CCCEEEEEE
Confidence 47899999999999988 7889999999999843 13568988875 8999999999999874321 356899999
Q ss_pred EecC-CCCCceeEEEEEeCccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l 99 (254)
||.+ ..+|++||++.|++.+.
T Consensus 90 ~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 90 MDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred EECCCCCCCcEeEEEEECCccC
Confidence 9998 55789999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-16 Score=123.71 Aligned_cols=105 Identities=20% Similarity=0.292 Sum_probs=87.5
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
+.|+|+|++|++|+.. +..+..||||+|.+.+ ..+.+|++.++ +.||.|||+|.|.+.... ....|.|+||
T Consensus 13 ~~l~v~i~~a~nL~~~-~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~~---~~~~l~v~v~ 87 (131)
T cd04026 13 NKLTVEVREAKNLIPM-DPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPAD---KDRRLSIEVW 87 (131)
T ss_pred CEEEEEEEEeeCCCCc-CCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCchh---cCCEEEEEEE
Confidence 6799999999999987 6778999999999964 25679999875 899999999999987521 3578999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
|.+ ...+++||++.++|.++.... ...||+|.+.
T Consensus 88 d~~~~~~~~~iG~~~~~l~~l~~~~-----~~~w~~L~~~ 122 (131)
T cd04026 88 DWDRTTRNDFMGSLSFGVSELIKMP-----VDGWYKLLNQ 122 (131)
T ss_pred ECCCCCCcceeEEEEEeHHHhCcCc-----cCceEECcCc
Confidence 998 457899999999999987542 3578998764
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.9e-16 Score=126.05 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=76.8
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--c--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--S--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|+|+|++|++|++. +..|.+||||+|.+.+ . .+.+|++.+ ++.||+|||+|.|.+..+.+ ....|.|+
T Consensus 12 ~~~~L~V~v~~A~~L~~~-d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~f~i~~~~~--~~~~l~~~ 87 (134)
T cd08403 12 TAGRLTLTIIKARNLKAM-DITGFSDPYVKVSLMCEGRRLKKKKTSVKK-NTLNPTYNEALVFDVPPENV--DNVSLIIA 87 (134)
T ss_pred CCCEEEEEEEEeeCCCcc-ccCCCCCceEEEEEEeCCcccceecCCccc-CCCCCcccceEEEECCHHHh--CCCEEEEE
Confidence 467899999999999998 7889999999999853 1 356888875 49999999999999875322 34579999
Q ss_pred EEecC-CCCCceeEEEEEeCc
Q 047341 78 IYASG-YLRDYLIGTVRFLVS 97 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~ 97 (254)
|||++ ..++++||++.|++.
T Consensus 88 v~d~~~~~~~~~IG~~~l~~~ 108 (134)
T cd08403 88 VVDYDRVGHNELIGVCRVGPN 108 (134)
T ss_pred EEECCCCCCCceeEEEEECCC
Confidence 99998 456999999999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-15 Score=120.85 Aligned_cols=98 Identities=15% Similarity=0.229 Sum_probs=80.5
Q ss_pred EEEeeeCCCCCCCCCCCCCeEEEEEECCcC------eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 9 ILISAQGLKSPSSKMRRMQTYALVWIDSST------KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 9 ~VisA~~L~~~~d~~G~~DPYV~V~l~~~~------k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
..++|++|++. +..|.+||||+|.+.+.. .++|+++++ +.||+|||+|.|.+..+ ....|.|+|||++
T Consensus 5 ~~i~a~~L~~~-d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~----~~~~l~~~V~d~d 78 (120)
T cd04048 5 LSISCRNLLDK-DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFE----EVQKLRFEVYDVD 78 (120)
T ss_pred EEEEccCCCCC-CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeE----eeeEEEEEEEEec
Confidence 34889999998 788999999999997653 479999976 99999999999986532 4678999999998
Q ss_pred C-----CCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 83 Y-----LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 83 ~-----~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
. .+|++||++.+++.++..... ...++.|.
T Consensus 79 ~~~~~~~~~d~iG~~~i~l~~l~~~~~----~~~~~~l~ 113 (120)
T cd04048 79 SKSKDLSDHDFLGEAECTLGEIVSSPG----QKLTLPLK 113 (120)
T ss_pred CCcCCCCCCcEEEEEEEEHHHHhcCCC----cEEEEEcc
Confidence 4 578999999999999976532 34677773
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.66 E-value=6e-16 Score=125.61 Aligned_cols=91 Identities=21% Similarity=0.285 Sum_probs=75.2
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|++.++ +.||+|||+|.|.+..+.+ ....|.|+
T Consensus 12 ~~~~L~V~vi~a~~L~~~-d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~l--~~~~l~~~ 87 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQT-DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEEL--ENVSLVFT 87 (135)
T ss_pred CCCeEEEEEEEecCCCcc-cCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHHh--CCCEEEEE
Confidence 357899999999999998 78899999999998432 3468888765 9999999999999965322 34579999
Q ss_pred EEecC-CCCCceeEEEEEeC
Q 047341 78 IYASG-YLRDYLIGTVRFLV 96 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL 96 (254)
|||++ ..++++||++.|..
T Consensus 88 V~d~d~~~~~~~iG~~~l~~ 107 (135)
T cd08410 88 VYGHNVKSSNDFIGRIVIGQ 107 (135)
T ss_pred EEeCCCCCCCcEEEEEEEcC
Confidence 99998 56799999988764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=124.69 Aligned_cols=106 Identities=19% Similarity=0.329 Sum_probs=85.1
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECC---cCeEEeEeecCCCCCCeeceEEEEEecCCCc-----------cCCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDS---STKLCTRVDRAGAESPIWNEKFLFKVTPEFL-----------SSET 71 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~---~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l-----------~~~~ 71 (254)
|+|+|++|++|+.. ..|.+||||+|.+++ ..+.+|+++++ +.||.|||.|.|.+....- ....
T Consensus 1 L~V~Vi~A~~L~~~--~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALK--SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcc--cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEccccccccccccccccccccc
Confidence 68999999999876 468899999999984 45779999875 8999999999999876210 0135
Q ss_pred cEEEEEEEecCC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 72 SAISVEIYASGY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 72 ~~L~veV~D~d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
..|.|+|||.+. .++++||++.|+|.++..... ...||+|...
T Consensus 78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~----~~~W~~L~~~ 121 (137)
T cd08675 78 SELRVELWHASMVSGDDFLGEVRIPLQGLQQAGS----HQAWYFLQPR 121 (137)
T ss_pred cEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCc----ccceEecCCc
Confidence 789999999984 479999999999999875432 3578888653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=120.04 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=80.5
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~v 76 (254)
..+.|+|+|++|++|++. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||.|.|. +....+ ....|.|
T Consensus 13 ~~~~L~V~v~~a~~L~~~-~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~--~~~~l~~ 88 (123)
T cd04035 13 ANSALHCTIIRAKGLKAM-DANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDI--QRKTLRL 88 (123)
T ss_pred CCCEEEEEEEEeeCCCCC-CCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHh--CCCEEEE
Confidence 357899999999999988 7788999999999854 23679999875 8999999999996 442111 3578999
Q ss_pred EEEecCCCCCceeEEEEEeCccccccC
Q 047341 77 EIYASGYLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 77 eV~D~d~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+|||.+..++++||++.++|.++....
T Consensus 89 ~v~d~~~~~~~~iG~~~i~l~~l~~~~ 115 (123)
T cd04035 89 LVLDEDRFGNDFLGETRIPLKKLKPNQ 115 (123)
T ss_pred EEEEcCCcCCeeEEEEEEEcccCCCCc
Confidence 999998448999999999999987654
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=121.06 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=67.9
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
|.|+|++|+||+.. +||||++.+++. .+++|+++++ ++||+|||+|.|.+.. ...|.|.|||+
T Consensus 1 L~V~V~~A~~L~~~------sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~------s~~L~~~v~d~ 67 (118)
T cd08686 1 LNVIVHSAQGFKQS------ANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG------SQTLRILCYEK 67 (118)
T ss_pred CEEEEEeCCCCCCC------CCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC------CCEEEEEEEEc
Confidence 68999999999743 799999999762 4689999975 9999999999999974 67999999998
Q ss_pred C--------CCCCceeEEEEEeCcc
Q 047341 82 G--------YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 82 d--------~~~D~~LG~~~IpL~~ 98 (254)
. ...|+++|.+.|.|+-
T Consensus 68 ~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 68 CYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccccccCcccEEEEEEEEECH
Confidence 3 2468999999998853
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=121.53 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=79.5
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|.|+|++|++|+.. +..+..||||+|.+.+. .+.+|++.++ +.||.|||+|.|.+....+ ....|.|+
T Consensus 12 ~~~~L~V~v~~a~~L~~~-~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l--~~~~l~~~ 87 (134)
T cd00276 12 TAERLTVVVLKARNLPPS-DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQL--EEVSLVIT 87 (134)
T ss_pred CCCEEEEEEEEeeCCCCc-cCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHh--CCcEEEEE
Confidence 457899999999999988 77889999999999754 3568888865 8999999999999986322 36789999
Q ss_pred EEecC-CCCCceeEEEEEeCcc
Q 047341 78 IYASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~ 98 (254)
|||.+ ..++++||.+.|++.+
T Consensus 88 v~d~~~~~~~~~lG~~~i~l~~ 109 (134)
T cd00276 88 VVDKDSVGRNEVIGQVVLGPDS 109 (134)
T ss_pred EEecCCCCCCceeEEEEECCCC
Confidence 99998 4678999999999988
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-15 Score=122.46 Aligned_cols=92 Identities=21% Similarity=0.294 Sum_probs=75.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--c--CeEEeEeecCCC-CCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--S--TKLCTRVDRAGA-ESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~--~k~rTkv~k~gt-~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|.|+|++|++|++. ...+..||||+|.+-+ . .+.+|++.++ + .||+|||+|.|.|+.+. ....|.|+
T Consensus 13 ~~rLtV~VikarnL~~~-~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~---~~v~l~v~ 87 (135)
T cd08692 13 NSRIQLQILEAQNLPSS-STPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQE---HGIQFLIK 87 (135)
T ss_pred CCeEEEEEEEccCCCcc-cCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchh---heeEEEEE
Confidence 57899999999999987 4566779999999853 2 4678988875 6 57999999999998742 35788899
Q ss_pred EEecC-CCCCceeEEEEEeCccc
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l 99 (254)
|||++ ..++++||.+.++.+..
T Consensus 88 v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 88 LYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred EEeCCCCcCCceEEEEEECCccC
Confidence 99998 56799999999998763
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.4e-16 Score=146.14 Aligned_cols=105 Identities=20% Similarity=0.349 Sum_probs=91.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
...|.|+|..|+||.++ |.+|-+||||++.+-|. .|.+|++++. ++||+|||+|+|.+.++. ....|.|+|
T Consensus 179 ~~~l~v~i~ea~NLiPM-DpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~D---kdrRlsiEv 253 (683)
T KOG0696|consen 179 RDVLTVTIKEAKNLIPM-DPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSD---KDRRLSIEV 253 (683)
T ss_pred CceEEEEehhhcccccc-CCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEeccccc---ccceeEEEE
Confidence 35689999999999999 99999999999999653 5678999886 999999999999998753 589999999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
||+| ..+++|+|+..+.+++|...+. ..||.|..
T Consensus 254 WDWDrTsRNDFMGslSFgisEl~K~p~-----~GWyKlLs 288 (683)
T KOG0696|consen 254 WDWDRTSRNDFMGSLSFGISELQKAPV-----DGWYKLLS 288 (683)
T ss_pred ecccccccccccceecccHHHHhhcch-----hhHHHHhh
Confidence 9999 7789999999999999987765 35788765
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.2e-15 Score=160.76 Aligned_cols=120 Identities=13% Similarity=0.228 Sum_probs=99.8
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|.|.|+|++|+||. +.+|.+||||+|.++.+.+.||+++++ +.||+|||.|+|.+.... .+..|+|+|||++
T Consensus 1979 ~G~L~V~V~~a~nl~---~~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~---~~~~l~iev~d~d 2051 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK---QSMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPP---KGQKLHISCKSKN 2051 (2102)
T ss_pred CcceEEEEeeccccc---cccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCC---CCCceEEEEEecC
Confidence 478999999999998 247899999999998665669999986 899999999998887632 3578999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceE---EEEEEEEEe
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGV---LSIGSMLID 134 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~---I~lsl~f~p 134 (254)
.++++.+|.+.|+|.++..++. ...+|+|.. +|+..|. |++.+.|.+
T Consensus 2052 ~f~kd~~G~~~i~l~~vv~~~~----~~~~~~L~~-~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2052 TFGKSSLGKVTIQIDRVVMEGT----YSGEYSLNP-ESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred ccCCCCCceEEEEHHHHhcCce----eeeeeecCc-ccccCCCcceEEEEEEecC
Confidence 6687899999999999987654 357889874 4566777 999988764
|
|
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=110.98 Aligned_cols=92 Identities=16% Similarity=0.220 Sum_probs=73.2
Q ss_pred EEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 8 IILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 8 V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
+-.++|++|+.. +..|.+||||+|.+.+. ..++|+++++ +.||+|| .|.|++..-.-......|.|+|||++
T Consensus 4 ~~~i~a~~L~~~-d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 4 ELQFSGKKLDKK-DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEeCCCCCC-CCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 445699999998 88899999999998654 2579999975 8999999 68887642000012679999999999
Q ss_pred -CCCCceeEEEEEeCcccccc
Q 047341 83 -YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~ 102 (254)
..+|++||++.+++.++...
T Consensus 81 ~~~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 SSGKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CCCCCcEEEEEEEEHHHHhcC
Confidence 45789999999999998744
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.1e-14 Score=104.63 Aligned_cols=82 Identities=29% Similarity=0.543 Sum_probs=70.1
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC--eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSST--KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~--k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
|+|+|++|++|... +..+..||||++.+++.. .++|++.++ +.+|.|||.|.|.+... ....|.|+|||.+.
T Consensus 1 L~v~I~~a~~L~~~-~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~----~~~~l~~~V~~~~~ 74 (85)
T PF00168_consen 1 LTVTIHSARNLPSK-DSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDP----DLDSLSFEVWDKDS 74 (85)
T ss_dssp EEEEEEEEESSSSS-STTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHG----CGTEEEEEEEEETS
T ss_pred CEEEEEEEECCCCc-ccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecc----cccceEEEEEECCC
Confidence 78999999999987 677899999999998754 389998875 79999999999997764 35569999999995
Q ss_pred C-CCceeEEEE
Q 047341 84 L-RDYLIGTVR 93 (254)
Q Consensus 84 ~-~D~~LG~~~ 93 (254)
. .|++||++.
T Consensus 75 ~~~~~~iG~~~ 85 (85)
T PF00168_consen 75 FGKDELIGEVK 85 (85)
T ss_dssp SSSEEEEEEEE
T ss_pred CCCCCEEEEEC
Confidence 4 499999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.5e-13 Score=139.12 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=105.0
Q ss_pred cccEEEEEEEeeeCCCCCCC--CCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSS--KMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d--~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
+.|+|.|+|.+|++|+.. + ..+.+|||+++........||++.++ +.||+|||+|+..+.. -...|.|+||
T Consensus 434 aIGVv~vkI~sa~~lk~~-d~~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns-----~~d~L~Lsly 506 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKS-DSTINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNS-----FTDPLNLSLY 506 (1227)
T ss_pred eeEEEEEEEeeccCcccc-cccccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEecc-----cCCceeEEEE
Confidence 579999999999999987 5 57899999999988766779999875 9999999999999986 3899999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGS 136 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~ 136 (254)
|.+ ...|+.+|.+.++|..|...... ....|+++. +.+..|.|++.+.|.|.-
T Consensus 507 D~n~~~sd~vvG~~~l~L~~L~~~~~~---~ne~~e~~~-~~k~vGrL~yDl~ffp~~ 560 (1227)
T COG5038 507 DFNSFKSDKVVGSTQLDLALLHQNPVK---KNELYEFLR-NTKNVGRLTYDLRFFPVI 560 (1227)
T ss_pred eccccCCcceeeeEEechHHhhhcccc---ccceeeeec-cCccceEEEEeeeeeccc
Confidence 976 77899999999999988765532 233566654 578899999999999864
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-12 Score=95.68 Aligned_cols=93 Identities=32% Similarity=0.523 Sum_probs=78.0
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|.|.|++|++|... ...+..+|||++.+.+. ...+|++..+ +.||.|||.|.|.+... ....|.|+|||..
T Consensus 1 ~l~i~i~~~~~l~~~-~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~----~~~~l~i~v~~~~ 74 (101)
T smart00239 1 TLTVKIISARNLPKK-DKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPP----ELAELEIEVYDKD 74 (101)
T ss_pred CeEEEEEEeeCCCCC-CCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCc----ccCEEEEEEEecC
Confidence 378999999999987 45567999999999875 5679988865 67999999999999862 2789999999998
Q ss_pred C-CCCceeEEEEEeCccccccC
Q 047341 83 Y-LRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 83 ~-~~D~~LG~~~IpL~~l~~~~ 103 (254)
. .++.+||.+.+++.++..+.
T Consensus 75 ~~~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 75 RFGRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred CccCCceeEEEEEEHHHcccCc
Confidence 4 35899999999999886554
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-12 Score=106.59 Aligned_cols=95 Identities=16% Similarity=0.312 Sum_probs=77.9
Q ss_pred EEEEEEeeeCCCCCC-CCCC--CCCeEEEEEECC--cCeEEeEeecCCCCC--CeeceEEEEEecC--------------
Q 047341 6 LEIILISAQGLKSPS-SKMR--RMQTYALVWIDS--STKLCTRVDRAGAES--PIWNEKFLFKVTP-------------- 64 (254)
Q Consensus 6 L~V~VisA~~L~~~~-d~~G--~~DPYV~V~l~~--~~k~rTkv~k~gt~N--P~WNE~f~F~v~~-------------- 64 (254)
|||.|..|+++.... ...| .+||||++++.+ ..+++|.|+.+ ++| |.||+.|.|++..
T Consensus 2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 899999999965431 3356 499999999987 36789999986 889 9999999998765
Q ss_pred -------CCccCCCcEEEEEEEecC-CCCCceeEEEEEeCccccccC
Q 047341 65 -------EFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 65 -------~~l~~~~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+.+ ....|.|+|||.| +..|++||++.++|..+..+.
T Consensus 81 ~~~~~~~e~~--~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYK--IPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEe--cCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 221 3678999999999 668999999999999887654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=130.16 Aligned_cols=130 Identities=15% Similarity=0.104 Sum_probs=107.4
Q ss_pred ccEEEEEEEeeeCCCCC-----------------CCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCC
Q 047341 3 TQILEIILISAQGLKSP-----------------SSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPE 65 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~-----------------~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~ 65 (254)
.|+|+|+|..|++|++. ....+.+||||.|.+.+..-.||+++.+...||.|||.|.+++.-
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah- 85 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH- 85 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-
Confidence 57899999999999862 011246799999999988778999997655799999999999974
Q ss_pred CccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcc---eEEEEEEEEEeCCCCCCc
Q 047341 66 FLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQ---GVLSIGSMLIDGSDLPAF 141 (254)
Q Consensus 66 ~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~---G~I~lsl~f~p~~~~p~l 141 (254)
....|.|.|.|.+..+..+||.+.||+.++..+.. -..|+++...+|++. -.|++++.|.|....|.+
T Consensus 86 ----~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~----i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~ 156 (808)
T PLN02270 86 ----MASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEE----VDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNW 156 (808)
T ss_pred ----CcceEEEEEecCCccCceEEEEEEEEHHHhcCCCc----cccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcch
Confidence 47899999999998899999999999999988754 347899988776542 389999999997765544
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.4e-12 Score=123.99 Aligned_cols=107 Identities=21% Similarity=0.332 Sum_probs=84.1
Q ss_pred cEEEEEEEeeeCCC-CC---CCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEE
Q 047341 4 QILEIILISAQGLK-SP---SSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAIS 75 (254)
Q Consensus 4 g~L~V~VisA~~L~-~~---~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ 75 (254)
.+|.|+|++|+++. +. .+.....||||+|.|.|. .+.+|.|. +++.||+|||+|.|.|... +-..|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~-nNg~nPvWne~F~F~i~~P----ELAlLr 483 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVK-NNEWKPTWGEEFTFPLTYP----DLALIS 483 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeC-CCCcCceecceeEEEEEcc----CceEEE
Confidence 57999999999874 11 022346899999999752 35578654 5699999999999998753 457899
Q ss_pred EEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc
Q 047341 76 VEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF 122 (254)
Q Consensus 76 veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~ 122 (254)
|+|+|+| ...|+|||++.+|+..+..+. ++.+|++..|..
T Consensus 484 f~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy-------R~VpL~~~~g~~ 524 (537)
T PLN02223 484 FEVYDYEVSTADAFCGQTCLPVSELIEGI-------RAVPLYDERGKA 524 (537)
T ss_pred EEEEecCCCCCCcEEEEEecchHHhcCCc-------eeEeccCCCcCC
Confidence 9999999 457899999999999987664 677888777754
|
|
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.7e-12 Score=129.93 Aligned_cols=153 Identities=19% Similarity=0.194 Sum_probs=113.4
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
..|.++|.|..|.+|.+. ...|++|||++|.+++..++||-.. ..++||+||+..+.++.. ..+.|.++++|.
T Consensus 709 pIg~irv~v~~andl~n~-i~g~~~dPya~v~~n~~~k~rti~~-~~~~npiw~~i~Yv~v~s-----k~~r~~l~~~~~ 781 (1227)
T COG5038 709 PIGAIRVSVRKANDLRNE-IPGGKSDPYATVLVNNLVKYRTIYG-SSTLNPIWNEILYVPVTS-----KNQRLTLECMDY 781 (1227)
T ss_pred ccceEEEEeehhhccccc-ccCcccccceEEEecceeEEEEecc-cCccccceeeeEEEEecC-----CccEEeeeeecc
Confidence 578999999999999987 7889999999999999888999544 459999999999999987 578899999999
Q ss_pred C-CCCCceeEEEEEeCccccccCCCCCC-e-----eEEEEeeCCCCCcceEEEEEEEEEeCCCCCCcccccccccccccc
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVATKTP-S-----FTAFQIRRPSGRFQGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMG 154 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~~~~~-~-----~~~~~L~~~~g~~~G~I~lsl~f~p~~~~p~l~~~~~~~~~dl~~ 154 (254)
+ ...|++||++.|++.++....++... . ...-+|..+....+|+|+|.++|+|. +...+..+.++..+
T Consensus 782 ~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~-----~i~~s~ee~~~~~k 856 (1227)
T COG5038 782 EESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPA-----VIVLSLEEVRYVDK 856 (1227)
T ss_pred hhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEee-----cccCChHHhcchhh
Confidence 8 55689999999999998875542211 1 11112222234679999999999955 44444455555444
Q ss_pred chhHHHhhhhhc
Q 047341 155 ESKRKESLMTRK 166 (254)
Q Consensus 155 ~~~~~~~~~~~k 166 (254)
...+.++.+++|
T Consensus 857 ~~~e~~~~~~~~ 868 (1227)
T COG5038 857 VSSEKRKSEKRK 868 (1227)
T ss_pred hhhHHHHhhhhh
Confidence 444444433333
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-13 Score=129.10 Aligned_cols=116 Identities=21% Similarity=0.348 Sum_probs=93.4
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
..+.++|++|++|... |..|++||||.+.++.. +.||+++. +.+||+|||.|.|.+.+ ....|.+.|||++.
T Consensus 295 akitltvlcaqgl~ak-dktg~sdpyvt~qv~kt-krrtrti~-~~lnpvw~ekfhfechn-----stdrikvrvwded~ 366 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAK-DKTGKSDPYVTAQVGKT-KRRTRTIH-QELNPVWNEKFHFECHN-----STDRIKVRVWDEDN 366 (1283)
T ss_pred eeeEEeeeecccceec-ccCCCCCCcEEEeeccc-chhhHhhh-hccchhhhhheeeeecC-----CCceeEEEEecCcc
Confidence 3578999999999998 89999999999999754 55888886 48999999999999987 47899999999873
Q ss_pred ------------CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 84 ------------LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 84 ------------~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
.+|+|||+..|-+..+...- ..||.|... +....|-|++.++..
T Consensus 367 dlksklrqkl~resddflgqtvievrtlsgem------dvwynlekrtdksavsgairlhisve 424 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLSGEM------DVWYNLEKRTDKSAVSGAIRLHISVE 424 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecccch------hhhcchhhccchhhccceEEEEEEEE
Confidence 25999999999887764322 378888532 445678777766654
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.6e-12 Score=91.74 Aligned_cols=89 Identities=26% Similarity=0.472 Sum_probs=76.2
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-C
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY-L 84 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~-~ 84 (254)
|.|.|++|++|... ...+..+|||++.+.+....+|++..+ +.||.|||.|.|.+... ....|.|+||+.+. .
T Consensus 1 l~v~i~~~~~l~~~-~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~----~~~~l~i~v~~~~~~~ 74 (102)
T cd00030 1 LRVTVIEARNLPAK-DLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDP----ESDTLTVEVWDKDRFS 74 (102)
T ss_pred CEEEEEeeeCCCCc-CCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCC----CCCEEEEEEEecCCCC
Confidence 57999999999886 466789999999998756779988865 79999999999999752 36889999999984 4
Q ss_pred CCceeEEEEEeCcccc
Q 047341 85 RDYLIGTVRFLVSNIS 100 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~ 100 (254)
.+++||.+.+++.++.
T Consensus 75 ~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 75 KDDFLGEVEIPLSELL 90 (102)
T ss_pred CCceeEEEEEeHHHhh
Confidence 5899999999999987
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.37 E-value=8e-12 Score=123.30 Aligned_cols=117 Identities=17% Similarity=0.242 Sum_probs=92.0
Q ss_pred cEEEEEEEeeeCCCCCC-----CCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 4 QILEIILISAQGLKSPS-----SKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~-----d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
..|.|+|++|++|+... +.....||||+|.+.| ..+.+|+++.+ +.||+|||+|.|++... +-..|
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~P----ELAll 544 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVP----ELALL 544 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcC----CccEE
Confidence 57999999999975321 1223469999999975 25669999876 59999999999998763 45789
Q ss_pred EEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 75 SVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 75 ~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
.|+|+|+| ...|+|+|++.|||..|..+. ++++|++..|...+...|-+.|
T Consensus 545 rf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy-------R~VpL~~~~G~~l~~a~Llv~f 596 (599)
T PLN02952 545 RIEVREYDMSEKDDFGGQTCLPVSELRPGI-------RSVPLHDKKGEKLKNVRLLMRF 596 (599)
T ss_pred EEEEEecCCCCCCCeEEEEEcchhHhcCCc-------eeEeCcCCCCCCCCCEEEEEEE
Confidence 99999998 457999999999999997764 5789987778776766666665
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.3e-12 Score=122.35 Aligned_cols=125 Identities=19% Similarity=0.272 Sum_probs=105.9
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY 83 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~ 83 (254)
..|.|.|..|++|+.. +..|..||||+|.++.....||.++.+ ++.|.|.|.|+|.++.. -..|.|-|||+|.
T Consensus 5 ~sl~vki~E~knL~~~-~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~-----F~~l~fYv~D~d~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSY-GPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRT-----FRYLSFYVWDRDL 77 (800)
T ss_pred cceeEEEeecccCCCC-CCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcc-----eeeEEEEEecccc
Confidence 4589999999999998 889999999999999877889998865 99999999999999984 5899999999998
Q ss_pred CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCCC
Q 047341 84 LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGSD 137 (254)
Q Consensus 84 ~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~~ 137 (254)
.+|+.||.+.|.=.+|...+. ...|..++-.+++..++|+|++++.+.+...
T Consensus 78 ~~D~~IGKvai~re~l~~~~~--~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~ 129 (800)
T KOG2059|consen 78 KRDDIIGKVAIKREDLHMYPG--KDTWFSLQPVDPDSEVQGKVHLELALTEAIQ 129 (800)
T ss_pred ccccccceeeeeHHHHhhCCC--CccceeccccCCChhhceeEEEEEEeccccC
Confidence 889999999998877765442 2234444445678889999999999988644
|
|
| >KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.4e-11 Score=120.61 Aligned_cols=119 Identities=24% Similarity=0.322 Sum_probs=93.9
Q ss_pred EEEEEEEeeeCCCCCCCC---CCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 5 ILEIILISAQGLKSPSSK---MRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~---~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
+|.|.|++++++....+. ...+||||.|.+-|. .+.+|+++++++-||.|+|+|.|++... +-.-|+|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vP----ELAliRF~ 692 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVP----ELALIRFE 692 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEecc----ceeEEEEE
Confidence 699999999976543222 246899999999753 4679997788899999999999999874 46889999
Q ss_pred EEecCC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEEEe
Q 047341 78 IYASGY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSMLID 134 (254)
Q Consensus 78 V~D~d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f~p 134 (254)
|+|+|. .+|+|+|+..+|+..|..+. +..+|.+..|.. .-+|.+.+.+.+
T Consensus 693 V~d~d~~~~ddF~GQ~tlP~~~L~~Gy-------RhVpL~~~~G~~~~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 693 VHDYDYIGKDDFIGQTTLPVSELRQGY-------RHVPLLSREGEALSSASLFVRIAIVE 745 (746)
T ss_pred EEecCCCCcccccceeeccHHHhhCce-------eeeeecCCCCccccceeEEEEEEEec
Confidence 999994 56999999999999997764 677888766643 456777776653
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.9e-11 Score=118.40 Aligned_cols=117 Identities=19% Similarity=0.250 Sum_probs=88.8
Q ss_pred cEEEEEEEeeeCCCCC--C---CCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 4 QILEIILISAQGLKSP--S---SKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 4 g~L~V~VisA~~L~~~--~---d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
.+|.|+|++++++... . +....+||||+|.|.+ ..+.+|++.. ++.||+|||+|.|++.-. +-..|
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~-n~~nP~Wneef~F~l~vP----ELAll 543 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEY-DTWTPIWNKEFIFPLAVP----ELALL 543 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccC-CCCCCccCCeeEEEEEcC----ceeEE
Confidence 5799999999986421 0 2223579999999964 2456888765 489999999999997653 46889
Q ss_pred EEEEEecCC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEE
Q 047341 75 SVEIYASGY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSML 132 (254)
Q Consensus 75 ~veV~D~d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f 132 (254)
+|+|+|++. .+|+|||+..||+..|..+. +..+|++.+|.. .-.|.+.+.|
T Consensus 544 Rf~V~d~d~~~~ddfiGQ~~lPv~~Lr~Gy-------R~V~L~~~~G~~l~~~~Ll~~f~~ 597 (598)
T PLN02230 544 RVEVHEHDINEKDDFGGQTCLPVSEIRQGI-------HAVPLFNRKGVKYSSTRLLMRFEF 597 (598)
T ss_pred EEEEEECCCCCCCCEEEEEEcchHHhhCcc-------ceEeccCCCcCCCCCCeeEEEEEe
Confidence 999999994 68999999999999997764 567888776643 2355555554
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=95.85 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=74.3
Q ss_pred EEEEEEeeeCCCCCCC---CCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 6 LEIILISAQGLKSPSS---KMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 6 L~V~VisA~~L~~~~d---~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
|.|+|.+|+|+... . ..+++||||.|.++...++||++ +.||.|||.|.|+|.. ...+.|.|||+.
T Consensus 1 L~I~V~~~RdvdH~-~~~~~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vdk------~nEiel~VyDk~ 69 (109)
T cd08689 1 LTITITSARDVDHI-ASPRFSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVEK------NNEEEVIVYDKG 69 (109)
T ss_pred CEEEEEEEecCccc-cchhhccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEecC------CcEEEEEEEeCC
Confidence 68999999999887 5 56789999999999888889976 5899999999999953 789999999997
Q ss_pred CCCCceeEEEEEeCcccccc
Q 047341 83 YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~ 102 (254)
....-.||...|+|++|...
T Consensus 70 ~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 70 GDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCeecceeeehhhHHHHHHH
Confidence 65667899999999988643
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.9e-11 Score=115.71 Aligned_cols=120 Identities=14% Similarity=0.226 Sum_probs=93.9
Q ss_pred cEEEEEEEeeeCCCC---CC--CCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCee-ceEEEEEecCCCccCCCcE
Q 047341 4 QILEIILISAQGLKS---PS--SKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIW-NEKFLFKVTPEFLSSETSA 73 (254)
Q Consensus 4 g~L~V~VisA~~L~~---~~--d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~W-NE~f~F~v~~~~l~~~~~~ 73 (254)
..|.|+|++|++|.- .. +....+||||+|.+.+. .+.+|+++++ +.||+| ||+|.|.+... +-..
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~p----ELA~ 505 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVP----ELAL 505 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcC----ceeE
Confidence 369999999998731 10 12234899999999642 4679998865 689999 99999998653 4578
Q ss_pred EEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEEEeC
Q 047341 74 ISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSMLIDG 135 (254)
Q Consensus 74 L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f~p~ 135 (254)
|.|.|+|++ ..+|+|||++.||+..|..+ .+..+|.+..|.. ..+|.+.+.+.+.
T Consensus 506 lRf~V~D~d~~~~d~figq~~lPv~~Lr~G-------YR~VpL~~~~G~~l~~atLfv~~~~~~~ 563 (567)
T PLN02228 506 LWFKVQDYDNDTQNDFAGQTCLPLPELKSG-------VRAVRLHDRAGKAYKNTRLLVSFALDPP 563 (567)
T ss_pred EEEEEEeCCCCCCCCEEEEEEcchhHhhCC-------eeEEEccCCCCCCCCCeEEEEEEEEcCc
Confidence 999999998 56799999999999998765 3677888877753 5678888888765
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.5e-10 Score=114.00 Aligned_cols=117 Identities=19% Similarity=0.217 Sum_probs=88.4
Q ss_pred cEEEEEEEeeeCCC--CCC---CCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 4 QILEIILISAQGLK--SPS---SKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 4 g~L~V~VisA~~L~--~~~---d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
.+|.|+|++++++. ... +....+||||+|.|.| ..+.+|+++.+ +.||+|||+|.|.+.-. +-..|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~P----eLAll 526 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVP----ELALL 526 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcC----ceeEE
Confidence 47999999998742 111 1234679999999964 24679999876 58999999999997652 46889
Q ss_pred EEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEE
Q 047341 75 SVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSML 132 (254)
Q Consensus 75 ~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f 132 (254)
+|+|+|+| ..+|+|||++.||+..|..+. +..+|++..|.. .-.|.+.+.|
T Consensus 527 Rf~V~d~D~~~~ddfigq~~lPv~~Lr~Gy-------R~V~L~~~~g~~l~~a~Lfv~~~~ 580 (581)
T PLN02222 527 RLEVHEYDMSEKDDFGGQTCLPVWELSQGI-------RAFPLHSRKGEKYKSVKLLVKVEF 580 (581)
T ss_pred EEEEEECCCCCCCcEEEEEEcchhhhhCcc-------ceEEccCCCcCCCCCeeEEEEEEe
Confidence 99999998 457999999999999987664 577888776643 3355555554
|
|
| >KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=9.7e-11 Score=112.07 Aligned_cols=92 Identities=25% Similarity=0.360 Sum_probs=77.1
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|.|++|++|+.. +..+..||||++.+-.. .+.+|.+.+. ++||+|||+|.|.|+.+.+ ....|.|+|
T Consensus 297 ~g~ltv~v~kar~L~~~-~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l--~~~~l~l~V 372 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSM-DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQL--AEVSLELTV 372 (421)
T ss_pred CCeEEEEEEEecCCCcc-cCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHh--heeEEEEEE
Confidence 47899999999999998 78899999999999532 4668877764 9999999999999987544 567899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..++++||.+.+....
T Consensus 373 ~d~d~~~~~~~iG~~~lG~~~ 393 (421)
T KOG1028|consen 373 WDHDTLGSNDLIGRCILGSDS 393 (421)
T ss_pred EEcccccccceeeEEEecCCC
Confidence 9999 5567799988887654
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.2e-10 Score=114.86 Aligned_cols=96 Identities=18% Similarity=0.264 Sum_probs=83.0
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC------eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSST------KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~------k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+|.|.|+.|+++.+. |.+|-+||||+|.+.|.. ..+|+|++. ++||+|+|.|+|.|+.+...-+...|.|.
T Consensus 947 q~L~veVlhA~diipL-D~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e~c~te~Am~~FT 1024 (1103)
T KOG1328|consen 947 QTLVVEVLHAKDIIPL-DSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPEPCSTETAMLHFT 1024 (1103)
T ss_pred cchhhhhhcccccccc-CCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCccccccccceEEEE
Confidence 4678899999999999 999999999999998752 358999876 99999999999999987655557789999
Q ss_pred EEecCC-CCCceeEEEEEeCccccc
Q 047341 78 IYASGY-LRDYLIGTVRFLVSNISL 101 (254)
Q Consensus 78 V~D~d~-~~D~~LG~~~IpL~~l~~ 101 (254)
|||+|. ..++|-|++.+.|+++..
T Consensus 1025 VMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1025 VMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred eeccceecccccchHHHHhhCCCCC
Confidence 999994 468999999999988753
|
|
| >KOG1264 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=106.51 Aligned_cols=101 Identities=21% Similarity=0.334 Sum_probs=80.4
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeec-eEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWN-EKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WN-E~f~F~v~~~~l~~~~~~L~veV 78 (254)
-+|.|.|+.|+.|+.. ..|...|||.|.+-|. .+++|.++.++|+||+|| |+|+|.|... +-..|+|.|
T Consensus 1065 ~~lsv~vigaRHL~k~--gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP----e~A~lRF~V 1138 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL--GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP----EFAFLRFVV 1138 (1267)
T ss_pred eEEEEEEeeccccccC--CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC----ceEEEEEEE
Confidence 4688999999999965 2355679999999652 455666666779999999 9999999874 468899999
Q ss_pred EecCCCC-CceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASGYLR-DYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d~~~-D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
+|.|+.+ ..|||++.+|+..+..+ .++.+|++
T Consensus 1139 ~eeDmfs~~~FiaqA~yPv~~ik~G-------fRsVpLkN 1171 (1267)
T KOG1264|consen 1139 YEEDMFSDPNFLAQATYPVKAIKSG-------FRSVPLKN 1171 (1267)
T ss_pred ecccccCCcceeeeeecchhhhhcc-------ceeeeccc
Confidence 9999655 46999999999988655 35677764
|
|
| >KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.6e-10 Score=114.19 Aligned_cols=124 Identities=20% Similarity=0.314 Sum_probs=94.6
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCe------------------------------EEeEeecCCCCCCeec
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTK------------------------------LCTRVDRAGAESPIWN 55 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k------------------------------~rTkv~k~gt~NP~WN 55 (254)
|.|.+..|+||.+. +.+|-+|||+...+-+..+ .-|.|.+ .|+||.|+
T Consensus 116 l~is~~~ak~l~ak-d~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~-~TLnPkW~ 193 (1103)
T KOG1328|consen 116 LNISLLEAKDLIAK-DVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKK-KTLNPKWS 193 (1103)
T ss_pred HHHHHHHhcCcccc-CCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccccc-ccCCcchh
Confidence 44566789999988 8999999999988854210 1244444 59999999
Q ss_pred eEEEEEecCCCccCCCcEEEEEEEecCC----------------------------------C---CCceeEEEEEeCcc
Q 047341 56 EKFLFKVTPEFLSSETSAISVEIYASGY----------------------------------L---RDYLIGTVRFLVSN 98 (254)
Q Consensus 56 E~f~F~v~~~~l~~~~~~L~veV~D~d~----------------------------------~---~D~~LG~~~IpL~~ 98 (254)
|+|.|.|.+- ....+++.|||+|. + .|+|||.+.|||.+
T Consensus 194 EkF~F~IeDv----~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E 269 (1103)
T KOG1328|consen 194 EKFQFTIEDV----QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE 269 (1103)
T ss_pred hheeeehhcc----ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence 9999999872 68899999999872 1 28999999999999
Q ss_pred ccccCCCCCCeeEEEEee--CCCCCcceEEEEEEEEEeCCCCCC
Q 047341 99 ISLSVATKTPSFTAFQIR--RPSGRFQGVLSIGSMLIDGSDLPA 140 (254)
Q Consensus 99 l~~~~~~~~~~~~~~~L~--~~~g~~~G~I~lsl~f~p~~~~p~ 140 (254)
+...+- ..|+.|. ..+.+++|.+++.+++.....-.+
T Consensus 270 iP~~Gl-----d~WFkLepRS~~S~VqG~~~LklwLsT~e~~~a 308 (1103)
T KOG1328|consen 270 IPPDGL-----DQWFKLEPRSDKSKVQGQVKLKLWLSTKEEGRA 308 (1103)
T ss_pred CCcchH-----HHHhccCcccccccccceEEEEEEEeeeccccc
Confidence 987654 2466664 335689999999999987654333
|
|
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=98.92 E-value=1e-08 Score=103.39 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=92.7
Q ss_pred ccEEEEEEEeeeCCCCCC---CCC-CCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCC-cEEEEE
Q 047341 3 TQILEIILISAQGLKSPS---SKM-RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSET-SAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~---d~~-G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~-~~L~ve 77 (254)
-|+|+++|..|+-+...- +.. ...||||+|.+.+....|| . +..||.|||.|.+++.- .. ..|.|.
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~-~~~~p~w~e~f~i~~ah-----~~~~~~~f~ 79 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---S-HEYDRVWNQTFQILCAH-----PLDSTITIT 79 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---C-CCCCCccccceeEEeee-----ecCCcEEEE
Confidence 478999999998543320 111 1239999999988766788 2 35699999999999974 24 579999
Q ss_pred EEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc-ce-EEEEEEEEEeCCCCCC
Q 047341 78 IYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF-QG-VLSIGSMLIDGSDLPA 140 (254)
Q Consensus 78 V~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~-~G-~I~lsl~f~p~~~~p~ 140 (254)
|.| +-.+||.+.||+.++..+.. ....|+++...+|++ .| .|++++.|.|....|.
T Consensus 80 vk~----~~~~ig~~~~p~~~~~~g~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 137 (758)
T PLN02352 80 LKT----KCSILGRFHIQAHQIVTEAS---FINGFFPLIMENGKPNPELKLRFMLWFRPAELEPT 137 (758)
T ss_pred Eec----CCeEEEEEEEEHHHhhCCCc---ccceEEEcccCCCCCCCCCEEEEEEEEEEhhhCcc
Confidence 998 57899999999999987643 135789998776654 44 9999999999876543
|
|
| >KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-08 Score=98.53 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=99.1
Q ss_pred cEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECCcCeEEeEeecCCCCCCeece-EEEEEecCCCccCCCcEEEEEEEec
Q 047341 4 QILEIILISAQGLKSPSSKM-RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNE-KFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE-~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
|.|-|.|..|++|+.+ |.. ...|.||.|.+... .++|.|..+ ++||.||. -|.|.|++..+ +...|.|.++|+
T Consensus 3 gkl~vki~a~r~lpvm-dkasd~tdafveik~~n~-t~ktdvf~k-slnp~wnsdwfkfevddadl--qdeplqi~lld~ 77 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVM-DKASDLTDAFVEIKFANT-TFKTDVFLK-SLNPQWNSDWFKFEVDDADL--QDEPLQIRLLDH 77 (1169)
T ss_pred CcceeEEEeccCCccc-ccccccchheeEEEeccc-ceehhhhhh-hcCCcccccceEEecChhhh--ccCCeeEEEecc
Confidence 6789999999999998 543 46899999999744 579999876 89999995 69999998665 678899999999
Q ss_pred C-CCCCceeEEEEEeCccccccCC------CCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVA------TKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~------~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
+ ...++-||.+.|.++-+..... .+..-..|+++.+.-...+|+|++-+..
T Consensus 78 dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv 135 (1169)
T KOG1031|consen 78 DTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV 135 (1169)
T ss_pred cccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence 9 6679999999999987654332 1233457888876545679999988764
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-09 Score=100.20 Aligned_cols=177 Identities=16% Similarity=0.184 Sum_probs=119.2
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEE--ecCCCccCCCcEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFK--VTPEFLSSETSAISV 76 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~--v~~~~l~~~~~~L~v 76 (254)
..++..+|..|++|+++ ++.+..|||+.+.+.+. .+.+|++.. +++||.|||+.... ..+.. ....+.+
T Consensus 92 ~~~~~~tl~~a~~lk~~-~~~~~~d~~~~~~llpga~kl~slr~~t~~-n~lN~~w~etev~~~i~~~~~---~~K~~Rk 166 (362)
T KOG1013|consen 92 SRMLDTTLDRAKGLKPM-DINGLADPYVKLHLLPGAGKLNSLRTKTTR-NTLNPEWNETEVYEGITDDDT---HLKVLRK 166 (362)
T ss_pred hhhcceeechhcccchh-hhhhhcchHHhhhcccchhhhhhhhHHhhc-cCcCcceeccceecccccchh---hhhhhhe
Confidence 46788999999999999 89999999999999863 346777775 49999999875544 33321 4577888
Q ss_pred EEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee--C---CCCCcceEEEEEEEEEeCCC--------CCCcc
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR--R---PSGRFQGVLSIGSMLIDGSD--------LPAFD 142 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~--~---~~g~~~G~I~lsl~f~p~~~--------~p~l~ 142 (254)
.|.|.+ +..++++|+.++++..+..........+....+- . ..-..+|.|.+++.|-.... +..+.
T Consensus 167 ~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ 246 (362)
T KOG1013|consen 167 VVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTIIRCSHLA 246 (362)
T ss_pred eeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEEEEeeeee
Confidence 888887 6678999999999988876554211122222221 1 11257899999999876543 34456
Q ss_pred ccccccccccc-------cchhHHHhhhhhccccccccccCCCcccccc
Q 047341 143 EVSAIGYRDLM-------GESKRKESLMTRKSKSMADEFDAGDDESWEN 184 (254)
Q Consensus 143 ~~~~~~~~dl~-------~~~~~~~~~~~~k~~~~~~~f~~~~~~~~~~ 184 (254)
.++.++|.|+. ..+++.+++.+.|.++.--.|+..=+..-++
T Consensus 247 ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~p 295 (362)
T KOG1013|consen 247 SSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGP 295 (362)
T ss_pred ccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCc
Confidence 68999999843 2334444444445555554444444433344
|
|
| >KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.9e-07 Score=90.32 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=86.3
Q ss_pred EEEeeeCCCCCCCCCCCCCeEEEEEECCcC---eEEeEeecCCCCCCeeceEEEEEecCCC---------c-cC-CCcEE
Q 047341 9 ILISAQGLKSPSSKMRRMQTYALVWIDSST---KLCTRVDRAGAESPIWNEKFLFKVTPEF---------L-SS-ETSAI 74 (254)
Q Consensus 9 ~VisA~~L~~~~d~~G~~DPYV~V~l~~~~---k~rTkv~k~gt~NP~WNE~f~F~v~~~~---------l-~~-~~~~L 74 (254)
.+++++++-+. .++.+||||+|...+.. ..+|++.++ +.||.|||.|+|.+.... + .+ .-..|
T Consensus 136 ~~L~~r~~~P~--~~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 136 HVLKTRQGLPI--INGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhcccCce--eCCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 34455565553 45679999999986542 258888876 999999999999997630 0 00 13568
Q ss_pred EEEEEecC--CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC-CC------CCcceEEEEEEEEEeCCCCC
Q 047341 75 SVEIYASG--YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR-PS------GRFQGVLSIGSMLIDGSDLP 139 (254)
Q Consensus 75 ~veV~D~d--~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~-~~------g~~~G~I~lsl~f~p~~~~p 139 (254)
.+++|+.. ...+.|+|++++|+..+..... ...||.|.. ++ +.--|.+++.+.|......|
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~----p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~D~Vlp 282 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKSS----PAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTEDHVLP 282 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhhhccC----ccceEEEecCCCcccCCCCCCccceeeeEEeeeceecc
Confidence 88999844 4469999999999988763322 235777753 22 34579999999998764433
|
|
| >KOG1265 consensus Phospholipase C [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-06 Score=86.29 Aligned_cols=102 Identities=23% Similarity=0.354 Sum_probs=80.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc------CeEEeEeecCCCCCCeece-EEEEE--ecCCCccCCCcE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS------TKLCTRVDRAGAESPIWNE-KFLFK--VTPEFLSSETSA 73 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~------~k~rTkv~k~gt~NP~WNE-~f~F~--v~~~~l~~~~~~ 73 (254)
..+|.|+|++++-|... ++..||.|.+-+- ..+||++..+++.||+||| .|.|. |-+ +-..
T Consensus 702 A~t~sV~VISgqFLSdr-----kvgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLp-----eLA~ 771 (1189)
T KOG1265|consen 702 AATLSVTVISGQFLSDR-----KVGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLP-----ELAS 771 (1189)
T ss_pred EeeEEEEEEeeeecccc-----ccCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceeccc-----chhh
Confidence 36799999999999876 2569999999642 4578999888999999997 58886 322 4689
Q ss_pred EEEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcce
Q 047341 74 ISVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQG 124 (254)
Q Consensus 74 L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G 124 (254)
|.|.||++ +.+|||+--+|+..+..+. +...|+.+.+.+-+
T Consensus 772 lRiavyeE---ggK~ig~RIlpvd~l~~GY-------rhv~LRse~Nqpl~ 812 (1189)
T KOG1265|consen 772 LRIAVYEE---GGKFIGQRILPVDGLNAGY-------RHVCLRSESNQPLT 812 (1189)
T ss_pred eeeeeecc---CCceeeeeccchhcccCcc-------eeEEecCCCCCccc
Confidence 99999986 4689999999999887664 45677776665544
|
|
| >KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-06 Score=90.77 Aligned_cols=106 Identities=21% Similarity=0.388 Sum_probs=83.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~ve 77 (254)
.++|.|.|..|++|.-. .-....||||+..+.|. .|.||+|+++ +.||+|||.+.+. .+-+.+ ....|.+.
T Consensus 1523 ~~~LtImV~H~K~L~~L-qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~~l--~qReLQ~s 1598 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALL-QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKEIL--QQRELQVS 1598 (1639)
T ss_pred CceEEEEhhhhcccccc-cCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchhhh--hhheeeee
Confidence 47899999999999765 34557899999999763 4679999986 9999999988766 333222 46899999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
||..+ ...+.++|.+.|||.++....+ ...||+|-
T Consensus 1599 Vls~~~~~en~~lg~v~i~L~~~~l~kE----~~~Wy~lg 1634 (1639)
T KOG0905|consen 1599 VLSNGGLLENVFLGGVNIPLLKVDLLKE----SVGWYNLG 1634 (1639)
T ss_pred eecccceeeeeeeeeeecchhhcchhhh----hcceeecc
Confidence 99988 5578999999999998765443 24788874
|
|
| >KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.96 E-value=1e-05 Score=74.42 Aligned_cols=87 Identities=16% Similarity=0.207 Sum_probs=72.9
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.-|.|+++.+..|... |.+|.+||||.+++.+. .+.+|++.++ ++||+||+.|.|.+.+..| ....+.|.||
T Consensus 233 ~~l~vt~iRc~~l~ss-Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL--a~~kv~lsvg 308 (362)
T KOG1013|consen 233 PGLIVTIIRCSHLASS-DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL--AYKKVALSVG 308 (362)
T ss_pred CceEEEEEEeeeeecc-ccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccch--hcceEEEeec
Confidence 4578999999999998 89999999999999763 3568888765 9999999999999998765 5789999999
Q ss_pred ecCCC-CCceeEEEEE
Q 047341 80 ASGYL-RDYLIGTVRF 94 (254)
Q Consensus 80 D~d~~-~D~~LG~~~I 94 (254)
|.+.. ..+++|-...
T Consensus 309 d~~~G~s~d~~GG~~~ 324 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSML 324 (362)
T ss_pred ccCCCcCccCCCcccc
Confidence 99955 6788885433
|
|
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.90 E-value=7e-06 Score=84.14 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=71.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC-eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSST-KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~-k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
.+||.|+.|-+|.+. |.+|..|||+.|.+++.. .-++..+. +++||++++-|.+...-. ....|.++|||+|
T Consensus 614 LvrVyvv~A~~L~p~-D~ng~adpYv~l~lGk~~~~d~~~yip-~tlnPVfgkmfel~~~lp----~ek~l~v~vyd~D~ 687 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPS-DGNGDADPYVKLLLGKKRTLDRAHYIP-NTLNPVFGKMFELECLLP----FEKDLIVEVYDHDL 687 (1105)
T ss_pred eEEEEEEEeeecccc-CCCCCcCceeeeeeccchhhhhhhcCc-CCCCcHHHHHHHhhcccc----hhhcceeEEEEeec
Confidence 578999999999998 999999999999998642 11333344 499999999887776542 3678899999999
Q ss_pred CCCCceeEEEEEeCcc
Q 047341 83 YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~ 98 (254)
..+|+.||+..|.|+.
T Consensus 688 ~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 688 EAQDEKIGETTIDLEN 703 (1105)
T ss_pred ccccchhhceehhhhh
Confidence 5579999999999875
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.82 E-value=3e-05 Score=59.11 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=68.2
Q ss_pred EEEEEeeeCCCCCCCCCCCCCeEEE--EEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC
Q 047341 7 EIILISAQGLKSPSSKMRRMQTYAL--VWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL 84 (254)
Q Consensus 7 ~V~VisA~~L~~~~d~~G~~DPYV~--V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~ 84 (254)
-|+|+.++||.-++.......-|++ +.+......+|.+. .|..||+|+|+|.|.+.-.. .+...|.|.|+. ...
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~r-rgs~d~~f~ETFVFqi~l~q--L~~V~L~fsv~~-~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAK-EGSNDIEFMETFVFAIKLQN--LQTVRLVFKIQT-QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhh-cCCCChhHHHHHHHHHHHhh--ccceEEEEEeec-cCC
Confidence 3789999999866433334556775 55555567788765 46999999999999987643 367889999998 555
Q ss_pred CCceeEEEEEeCcccc
Q 047341 85 RDYLIGTVRFLVSNIS 100 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~ 100 (254)
+.+.||.+.+.++++-
T Consensus 78 RKe~iG~~sL~l~s~g 93 (103)
T cd08684 78 RKRTIGECSLSLRTLS 93 (103)
T ss_pred ccceeeEEEeecccCC
Confidence 7899999999988763
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.7e-05 Score=75.35 Aligned_cols=88 Identities=10% Similarity=0.212 Sum_probs=70.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.|.+.|+|++|+ + +. .|||..+-.-+.+.+||.+.+. |+||+||+...|.|.+. +....+|.|||.+
T Consensus 53 ~~~~~~~~~~~~----~-~~---~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~----~~~~~~~~~~~~~ 119 (644)
T PLN02964 53 SGIALLTLVGAE----M-KF---KDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKN----GPHLARISVFETN 119 (644)
T ss_pred cCeEEEEeehhh----h-cc---CCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccC----CcceEEEEEEecC
Confidence 367889999987 4 22 4898776666677889988765 99999999999999875 3455799999999
Q ss_pred -CCCCceeEEEEEeCccccccC
Q 047341 83 -YLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~~ 103 (254)
+..++++|.+.++|.++....
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~kq 141 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVTQE 141 (644)
T ss_pred CCCHHHhhhheeecHhhccHHH
Confidence 667999999999988876554
|
|
| >KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00015 Score=72.11 Aligned_cols=106 Identities=17% Similarity=0.233 Sum_probs=81.1
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC------cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDS------STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~------~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|.|+.|.+|+-. ..|.-.|||.|.+-| +.|+.|+.. .++-.|-+||+|.|-+..+. .-+.-.|.|.
T Consensus 1125 hkvtvkvvaandlkwq--tsgmFrPFVEV~ivGP~lsDKKRK~~TKtK-snnWaPKyNEtF~f~Lg~e~-~Pe~YEL~~~ 1200 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQ--TSGMFRPFVEVHIVGPHLSDKKRKFSTKTK-SNNWAPKYNETFHFFLGNEG-GPEHYELQFC 1200 (1283)
T ss_pred ceEEEEEEecccccch--hccccccceEEEEecCcccchhhhcccccc-CCCcCcccCceeEEEeccCC-CCceEEEEEe
Confidence 4678999999999974 467789999999853 245566664 45778999999999987642 1245678888
Q ss_pred EEecCCCC-CceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 78 IYASGYLR-DYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 78 V~D~d~~~-D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|.|+=+.+ |+.+|.+.++|.++...+. .-.|++|.+
T Consensus 1201 VKDYCFAReDRvvGl~VlqL~~va~kGS----~a~W~pLgr 1237 (1283)
T KOG1011|consen 1201 VKDYCFAREDRVVGLAVLQLRSVADKGS----CACWVPLGR 1237 (1283)
T ss_pred ehhheeecccceeeeeeeehhhHhhcCc----eeEeeeccc
Confidence 88887654 8899999999999987754 246888854
|
|
| >KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.6e-05 Score=72.85 Aligned_cols=125 Identities=18% Similarity=0.230 Sum_probs=90.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEEC----CcCeEEeEeecCCCCCCeeceEEEEEecCCC-cc------CCCcE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWID----SSTKLCTRVDRAGAESPIWNEKFLFKVTPEF-LS------SETSA 73 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~----~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~-l~------~~~~~ 73 (254)
.|++.|+.+.++... ...-..|.|+++++- ..++.+|.|+++ +..|.|+|.|.+.+.... +. .....
T Consensus 368 elel~ivrg~~~pvp-~gp~hld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVP-GGPMHLDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred HhHHHHhhcccCCCC-CCchhHHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 466777888877765 223346789988772 235678999975 999999999999987611 00 01346
Q ss_pred EEEEEEecC-C-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 74 ISVEIYASG-Y-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 74 L~veV~D~d-~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
+.|+||+++ + .+|.|+|++.|.|.-|..... ....|+|.+......|.|.+.|++..+
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle~Len~ce----i~e~~~l~DGRK~vGGkLevKvRiR~P 505 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCE----ICEYLPLKDGRKAVGGKLEVKVRIRQP 505 (523)
T ss_pred eeEEEeeccccccccceeceeeeeehhhhcccc----hhhceeccccccccCCeeEEEEEEecc
Confidence 899999998 3 369999999999987755432 245678876555678999999998743
|
|
| >KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00012 Score=68.53 Aligned_cols=107 Identities=18% Similarity=0.343 Sum_probs=83.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.|.|+|.|+.|++|.........++|||+|++.+. .+.+|+..++ +..|.+-+...|.-++ +...|.+.|
T Consensus 268 ~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp-----~~k~Lq~tv 341 (405)
T KOG2060|consen 268 KGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSP-----PGKYLQGTV 341 (405)
T ss_pred cCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCC-----CccEEEEEE
Confidence 46799999999999765334446899999999753 4568888775 8888888888888876 588999999
Q ss_pred Ee-cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 79 YA-SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 79 ~D-~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
|. +. ...+.|+|.++|-+.+|-... .+...||++...
T Consensus 342 ~gdygRmd~k~fmg~aqi~l~eL~ls~---~~~igwyKlfgs 380 (405)
T KOG2060|consen 342 WGDYGRMDHKSFMGVAQIMLDELNLSS---SPVIGWYKLFGS 380 (405)
T ss_pred eccccccchHHHhhHHHHHhhhhcccc---ccceeeeeccCC
Confidence 84 44 446789999999999886554 235789998753
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.026 Score=45.49 Aligned_cols=127 Identities=13% Similarity=0.167 Sum_probs=80.9
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC--eEEeEeecCCCCCCeeceEEEEEecC----CCccCCCcEEEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSST--KLCTRVDRAGAESPIWNEKFLFKVTP----EFLSSETSAISVEI 78 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~--k~rTkv~k~gt~NP~WNE~f~F~v~~----~~l~~~~~~L~veV 78 (254)
.+.|+|....+++.. ....||+..-+... ...|.........-.|||.|.+.+.- ..-..+...+.|.|
T Consensus 8 ~~~l~i~~l~~~p~~-----~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v 82 (143)
T PF10358_consen 8 QFDLTIHELENLPSS-----NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSV 82 (143)
T ss_pred EEEEEEEEeECcCCC-----CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEE
Confidence 467888899888863 12334444433332 34665544445678999999887542 10012456788999
Q ss_pred EecCCCCC-ceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCCCCC
Q 047341 79 YASGYLRD-YLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGSDLP 139 (254)
Q Consensus 79 ~D~d~~~D-~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~~~p 139 (254)
+.....+. ..||.+.|.|.++..... ......++|... ......|++++.+.+....|
T Consensus 83 ~~~~~~~~k~~lG~~~inLaey~~~~~--~~~~~~~~l~~~-~~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 83 FEVDGSGKKKVLGKVSINLAEYANEDE--EPITVRLLLKKC-KKSNATLSISISLSELREDP 141 (143)
T ss_pred EEecCCCccceEEEEEEEHHHhhCcCC--CcEEEEEeCccC-CCCCcEEEEEEEEEECccCC
Confidence 88753333 699999999999887542 223556666542 35677899999988765544
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00089 Score=54.49 Aligned_cols=97 Identities=21% Similarity=0.290 Sum_probs=69.0
Q ss_pred EEEEEEeeeCCCCCC--------CC----CCCCCeEEEEEEC--C-cCeEEeEeecCCCCCCeeceEEEEEec-------
Q 047341 6 LEIILISAQGLKSPS--------SK----MRRMQTYALVWID--S-STKLCTRVDRAGAESPIWNEKFLFKVT------- 63 (254)
Q Consensus 6 L~V~VisA~~L~~~~--------d~----~G~~DPYV~V~l~--~-~~k~rTkv~k~gt~NP~WNE~f~F~v~------- 63 (254)
|.|.|+.|.+|+... +. .-..++||++.+. + ....+|+++.. +-.|.||..+.|+++
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~~~ 79 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQRNS 79 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEcCC
Confidence 467888888886421 00 1136999999963 3 34568888765 899999999999987
Q ss_pred -CC-Cc--cCCCcEEEEEEEecCC-----------CCCceeEEEEEeCccccccC
Q 047341 64 -PE-FL--SSETSAISVEIYASGY-----------LRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 64 -~~-~l--~~~~~~L~veV~D~d~-----------~~D~~LG~~~IpL~~l~~~~ 103 (254)
+. .+ ..+...|.|+||+... .+|-+||.+.||+.+|+...
T Consensus 80 Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~r 134 (143)
T cd08683 80 GEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKR 134 (143)
T ss_pred CccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcc
Confidence 10 00 1246789999999762 25779999999999987654
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00017 Score=74.23 Aligned_cols=116 Identities=18% Similarity=0.218 Sum_probs=79.5
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEe---cC--CCccCCCcEEEEEEEe
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKV---TP--EFLSSETSAISVEIYA 80 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v---~~--~~l~~~~~~L~veV~D 80 (254)
+|+.|-+|+.|..+ +..+-+|||+.|..-++.+ .|-+.. +++||+||++..|.- .. ..+......+.|+|||
T Consensus 208 lR~yiyQar~L~a~-dk~~~sdp~a~v~f~~qs~-~T~~v~-~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd 284 (1105)
T KOG1326|consen 208 LRSYIYQARALGAP-DKDDESDPDAAVEFCGQSK-ETEVVP-GTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYD 284 (1105)
T ss_pred hHHHHHHHHhhcCC-CcccCCCchhhhhcccccc-eeEeec-CcCCCCccceeeccceeecCccchhhcCCCeEEEEeeh
Confidence 45666789999988 7888899999999987654 787775 599999999988862 21 1111223567899999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEE
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGS 130 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl 130 (254)
.+ ...++|+|.......-... . +...|+++.+ ++...|.+.++.
T Consensus 285 ~dr~g~~ef~gr~~~~p~V~~~-~----p~lkw~p~~r-g~~l~gd~l~a~ 329 (1105)
T KOG1326|consen 285 LDRSGINEFKGRKKQRPYVMVQ-C----PALKWVPTMR-GAFLDGDVLIAA 329 (1105)
T ss_pred hhhhchHHhhcccccceEEEec-C----CccceEEeec-ccccccchhHHH
Confidence 98 5568999976554322222 1 2346677654 455666666654
|
|
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.074 Score=44.59 Aligned_cols=129 Identities=12% Similarity=0.156 Sum_probs=82.8
Q ss_pred cEEEEEEEeeeCCCC-CCCCCCCCCeEEEEEEC-CcCeEEeEeecCCCCCCeeceEEEEEecCCCc---------cCCCc
Q 047341 4 QILEIILISAQGLKS-PSSKMRRMQTYALVWID-SSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL---------SSETS 72 (254)
Q Consensus 4 g~L~V~VisA~~L~~-~~d~~G~~DPYV~V~l~-~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l---------~~~~~ 72 (254)
.-|+|.|..++-... ..+..+..+.-.++.+. ..++++|+.+.- +-+|.++|.|.|++..+.. .....
T Consensus 9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~ 87 (156)
T PF15627_consen 9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLSISD 87 (156)
T ss_pred eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCccc-ccCCCCCCcEEEEecccccccccchhHhhcCCC
Confidence 458889988865432 10111455666666664 457899988764 8999999999999987431 11235
Q ss_pred EEEEEEEecCCC-CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC---CcceEEEEEEEEEeC
Q 047341 73 AISVEIYASGYL-RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG---RFQGVLSIGSMLIDG 135 (254)
Q Consensus 73 ~L~veV~D~d~~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g---~~~G~I~lsl~f~p~ 135 (254)
.|++.|...+.. ...++|+-.+.=..++..+.. .......|..... -+.|.|++++..+|.
T Consensus 88 pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~--~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 88 PIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNG--STSFTVELCGVGPESKVPVGILDLRLELLPN 152 (156)
T ss_pred ceEEEEEEecCCCceEeeeeceehHHHHhccCCC--ccceeEEEeccCCCCccceeEEEEEEEeecC
Confidence 677778777643 346888777765555544321 1134455554332 379999999999976
|
|
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.044 Score=45.98 Aligned_cols=88 Identities=14% Similarity=0.120 Sum_probs=58.7
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEEC-CcC----eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWID-SST----KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~-~~~----k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..++|+|++|.++.-. + ..|-||.+.+- +.. ...|+-.. ..++.|||-+.|++.-..+. ....|.|.|
T Consensus 8 ~~~~v~i~~~~~~~~~-~---~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~dLP-r~ArL~iti 80 (158)
T cd08398 8 SNLRIKILCATYVNVN-D---IDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPDLP-RSARLCLSI 80 (158)
T ss_pred CCeEEEEEeeccCCCC-C---cCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhcCC-hhheEEEEE
Confidence 4689999999988754 2 36888888662 221 12343222 46899999999987654331 367899999
Q ss_pred EecCCC-----CCceeEEEEEeCcc
Q 047341 79 YASGYL-----RDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d~~-----~D~~LG~~~IpL~~ 98 (254)
|+.... ....||.+.++|=+
T Consensus 81 ~~~~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 81 CSVKGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred EEEecccCCCCceEEEEEEEEEEEC
Confidence 997621 12468888887643
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.025 Score=44.45 Aligned_cols=101 Identities=16% Similarity=0.035 Sum_probs=55.8
Q ss_pred EEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCcc---CCCcEEEEEEEecCCCCCceeEEEEEeCccccccCCC
Q 047341 29 YALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLS---SETSAISVEIYASGYLRDYLIGTVRFLVSNISLSVAT 105 (254)
Q Consensus 29 YV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~---~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~ 105 (254)
||.+.+-.-....|.+.. +.+|.+|-+-.|.|..+.+. .....|.||++..-...-+.||.++|++..++....
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~d~~tla~~~i~l~~ll~~~~- 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGSDFETLAAGQISLRPLLESNG- 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS-EEEEEEEEE--SHHHH--S-
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccCCeEEEEEEEeechhhhcCCC-
Confidence 555665544556888886 79999999988888763210 125789999998763345899999999999986553
Q ss_pred CCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 106 KTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 106 ~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
........+...++..-|.|.+.++..
T Consensus 79 -~~i~~~~~l~g~~~~~~g~l~y~~rl~ 105 (107)
T PF11618_consen 79 -ERIHGSATLVGVSGEDFGTLEYWIRLR 105 (107)
T ss_dssp ---EEEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred -ceEEEEEEEeccCCCeEEEEEEEEEec
Confidence 123445566666778999999999875
|
It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A. |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.061 Score=45.64 Aligned_cols=74 Identities=20% Similarity=0.335 Sum_probs=49.8
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..++|+|+++.+|.-. + ...+-||.+.+ ++. ....|+... ...++.|||.+.|++.-..+. ....|.|.|
T Consensus 8 ~~f~i~i~~~~~~~~~-~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~-~~~~~~Wnewl~F~I~i~dLP-r~ArLciti 82 (173)
T cd08693 8 EKFSITLHKISNLNAA-E--RTMKVGVQAGLFHGGESLCKTVKTSEVS-GKNDPVWNETLEFDINVCDLP-RMARLCFAI 82 (173)
T ss_pred CCEEEEEEEeccCccC-C--CCceEEEEEEEEECCEEccCceEccccC-CCCccccceeEEcccchhcCC-hhHeEEEEE
Confidence 4589999999998852 1 23677888765 322 123454332 246799999999987654331 367899999
Q ss_pred EecC
Q 047341 79 YASG 82 (254)
Q Consensus 79 ~D~d 82 (254)
|+..
T Consensus 83 ~~~~ 86 (173)
T cd08693 83 YEVS 86 (173)
T ss_pred EEec
Confidence 9865
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.015 Score=53.83 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=77.5
Q ss_pred ccEEEEEEEeeeCCCCCCCC-CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 3 TQILEIILISAQGLKSPSSK-MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~-~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+|+|.|++..+++|+-.... .-..+-||++.++.+.+.||.|.. ++.-=.|.|.|...+-. ...+.+-||.|
T Consensus 50 tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs-~~~~f~w~e~F~~Dvv~------~~vl~~lvySW 122 (442)
T KOG1452|consen 50 TGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRS-SGPGFAWAEDFKHDVVN------IEVLHYLVYSW 122 (442)
T ss_pred cceEEEEEecccccccChhccCceeeeeeeeeecccCcccccccc-CCCCccchhhceeeccc------ceeeeEEEeec
Confidence 58899999999999865322 346788999999988888997753 46777899999998864 68899999998
Q ss_pred CC-CCCce--eEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 82 GY-LRDYL--IGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 82 d~-~~D~~--LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
+. .+.++ +| .|.+..+...+++ ..+.+ .-.++|.+.+.+.|.+.
T Consensus 123 ~pq~RHKLC~~g--~l~~~~v~rqspd-----~~~Al---~lePrgq~~~r~~~~Dp 169 (442)
T KOG1452|consen 123 PPQRRHKLCHLG--LLEAFVVDRQSPD-----RVVAL---YLEPRGQPPLRLPLADP 169 (442)
T ss_pred Cchhhccccccc--hhhhhhhhhcCCc-----ceeee---ecccCCCCceecccCCh
Confidence 83 33443 44 2333233333221 11122 23466777777776543
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.2 Score=41.31 Aligned_cols=91 Identities=18% Similarity=0.209 Sum_probs=59.0
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..++|.|....++... .....+-||.+.+ ++. ....|+... ...++.|||.+.|++.-..+ -....|.|.|
T Consensus 8 ~~~~i~i~~~~~~~~~--~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~-~~~~~~Wne~l~F~i~~~~L-P~~arL~itl 83 (156)
T cd08380 8 FNLRIKIHGITNINLL--DSEDLKLYVRVQLYHGGEPLCPPQSTKKVP-FSTSVTWNEWLTFDILISDL-PREARLCLSI 83 (156)
T ss_pred CCeEEEEEeecccccc--CCCceeEEEEEEEEECCEEccCceeccCCc-CCCCCcccceeEccchhhcC-ChhheEEEEE
Confidence 4578888888887642 1234677777766 332 122333322 23789999999998654332 1367899999
Q ss_pred EecCCC---CCceeEEEEEeCcc
Q 047341 79 YASGYL---RDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d~~---~D~~LG~~~IpL~~ 98 (254)
|+.... .+..||.+.++|=+
T Consensus 84 ~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 84 YAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred EEEecCCCCcceEEEEEeEEeEc
Confidence 997633 35799999998744
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.044 Score=53.97 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=60.9
Q ss_pred EeeeCCCCCCCCCCCCCeEEEEEEC--Cc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC-
Q 047341 11 ISAQGLKSPSSKMRRMQTYALVWID--SS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL- 84 (254)
Q Consensus 11 isA~~L~~~~d~~G~~DPYV~V~l~--~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~- 84 (254)
..|++|.+. +.++++|||..+.-- .. .-++|.+.++ ++||.|-.. .+.+..---......+.++|||++..
T Consensus 143 ~~~~~ld~k-d~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~ 219 (529)
T KOG1327|consen 143 FRAKNLDPK-DFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNG 219 (529)
T ss_pred eeeeecCcc-cccccCCcceEEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCC
Confidence 457888887 899999999876542 11 2358888775 999999862 22222100012467888999999944
Q ss_pred CCceeEEEEEeCcccc
Q 047341 85 RDYLIGTVRFLVSNIS 100 (254)
Q Consensus 85 ~D~~LG~~~IpL~~l~ 100 (254)
.+++||++..++.++.
T Consensus 220 ~~~~ig~~~tt~~~~~ 235 (529)
T KOG1327|consen 220 KHDLIGKFQTTLSELQ 235 (529)
T ss_pred CcCceeEecccHHHhc
Confidence 5699999999888875
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.16 Score=42.79 Aligned_cols=93 Identities=14% Similarity=0.155 Sum_probs=59.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEee---cCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVD---RAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~---k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
...++|+|.++.++... ......|-||.+.+ ++. ....|+.. +.-...+.|||.+.|++.-..+ --...|
T Consensus 7 ~~~~~i~v~~~h~~~~~-~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL 84 (171)
T cd04012 7 TDLLSVTVSSLHRIPPT-WVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRL 84 (171)
T ss_pred cccEEEEEEEeecCChH-HhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEE
Confidence 34688999999999876 43335788888866 322 12244321 1112357799999998765333 136789
Q ss_pred EEEEEecCCC----------CCceeEEEEEeCc
Q 047341 75 SVEIYASGYL----------RDYLIGTVRFLVS 97 (254)
Q Consensus 75 ~veV~D~d~~----------~D~~LG~~~IpL~ 97 (254)
.|.||+.... .+..||.+.++|=
T Consensus 85 ~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LF 117 (171)
T cd04012 85 VLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLF 117 (171)
T ss_pred EEEEEEEecCCccccccccccceEEEEEeEeeE
Confidence 9999987632 2457787777763
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.45 Score=40.72 Aligned_cols=75 Identities=12% Similarity=0.205 Sum_probs=46.9
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
..++|+|+++.. ++. +......-||.+.+ +.. ...+|.... -+.+|.|||-+.|++.-..+. ....|.|.||
T Consensus 10 ~~friki~~~~~-~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~-~~~~~~WnEwL~f~I~~~dLP-~~arLc~ti~ 85 (178)
T cd08399 10 RKFRVKILGIDI-PVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKP-FTEEVLWNTWLEFDIKIKDLP-KGALLNLQIY 85 (178)
T ss_pred CCEEEEEEeecc-cCc-CCCCceEEEEEEEEEECCeecccceeeccC-CCCCccccccEECccccccCC-hhhEEEEEEE
Confidence 357899999873 333 22333446666644 221 122554433 367799999999987654331 3689999999
Q ss_pred ecC
Q 047341 80 ASG 82 (254)
Q Consensus 80 D~d 82 (254)
+..
T Consensus 86 ~~~ 88 (178)
T cd08399 86 CGK 88 (178)
T ss_pred EEe
Confidence 964
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=42.32 Aligned_cols=70 Identities=13% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC-CCceeEEEEEeC
Q 047341 25 RMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL-RDYLIGTVRFLV 96 (254)
Q Consensus 25 ~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~-~D~~LG~~~IpL 96 (254)
..|-||.+.+ ++. ....|+... -+..+.|||-+.|+|.-..+. ....|.|.||+.... ....||.+.++|
T Consensus 29 ~~~l~V~~~l~~~~~~L~~pv~T~~~~-f~~~~~WnEwl~fpI~i~dLP-~~a~L~iti~~~~~~~~~~~vg~~~~~l 104 (159)
T cd08397 29 NSDLFVTCQVFDDGKPLTLPVQTSYKP-FKNRRNWNEWLTLPIKYSDLP-RNSQLAITIWDVSGTGKAVPFGGTTLSL 104 (159)
T ss_pred CCCEEEEEEEEECCEeccCcEEccccC-CCCCcccceeEEcccchhcCC-hhheEEEEEEEecCCCCceEEEEEEEee
Confidence 4788888876 222 122443332 356788999999998764431 368999999998733 456889888876
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.23 Score=41.84 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=56.3
Q ss_pred CCCeEEEEEECCcCeEEeEeecC-CCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccc
Q 047341 25 RMQTYALVWIDSSTKLCTRVDRA-GAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISL 101 (254)
Q Consensus 25 ~~DPYV~V~l~~~~k~rTkv~k~-gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~ 101 (254)
+..-|++|.++++...+|+...- ....-.+||.|.+.+.. -...|.|+||......+.+|+++.||+-....
T Consensus 36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~-----~Pesi~l~i~E~~~~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITR-----WPESIKLEIYEKSGLSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEec-----CCCEEEEEEEEccCccceEEEEEEeeCCCCcc
Confidence 45779999999887677765432 23335678999999976 37899999999888889999999999876543
|
|
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.84 Score=42.94 Aligned_cols=124 Identities=14% Similarity=0.158 Sum_probs=89.3
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCc---cCCCcEEEEEEEecC
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFL---SSETSAISVEIYASG 82 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l---~~~~~~L~veV~D~d 82 (254)
+.|.|+.|++.+.. .+..-++...+++. ...|.... ++..|.||..+.+.++...+ ..+...|.+++|..+
T Consensus 2 ivl~i~egr~F~~~----~~~~~vv~a~~ng~-~l~TDpv~-~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~ 75 (340)
T PF12416_consen 2 IVLSILEGRNFPQR----PRHPIVVEAKFNGE-SLETDPVP-HTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVD 75 (340)
T ss_pred EEEEEecccCCCCC----CCccEEEEEEeCCc-eeeecCCC-CCCCceeecceeeeccHHHHHHhhccCCceEEEEEEec
Confidence 56889999998765 13566788888876 45665443 48899999999998876322 124677999999987
Q ss_pred --CCCCceeEEEEEeCccc---cccCCCCCCeeEEEEeeCCCC---CcceEEEEEEEEEeCCC
Q 047341 83 --YLRDYLIGTVRFLVSNI---SLSVATKTPSFTAFQIRRPSG---RFQGVLSIGSMLIDGSD 137 (254)
Q Consensus 83 --~~~D~~LG~~~IpL~~l---~~~~~~~~~~~~~~~L~~~~g---~~~G~I~lsl~f~p~~~ 137 (254)
....+.||.+-++|... ..+. ......||+|..-+. +.+=+|.+.+...+.+.
T Consensus 76 ~~~~~re~iGyv~LdLRsa~~~~~~~--~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~ 136 (340)
T PF12416_consen 76 GSTGKRESIGYVVLDLRSAVVPQEKN--QKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSK 136 (340)
T ss_pred CCCCcceeccEEEEEccccccccccc--cccCCCeeEccccccccccCCccEEEEEEEecccc
Confidence 44578999999999887 3321 135678999986422 34568999998887643
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.28 Score=41.67 Aligned_cols=57 Identities=11% Similarity=0.226 Sum_probs=35.1
Q ss_pred eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC--CC--CceeEEEEEeCcc
Q 047341 39 KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY--LR--DYLIGTVRFLVSN 98 (254)
Q Consensus 39 k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~--~~--D~~LG~~~IpL~~ 98 (254)
.+.|.|... ..+|.|+|+|.+.++... .+...|.|.+++... .+ +..+|-+.+||-+
T Consensus 60 ~~~S~v~yh-~k~P~f~deiKi~LP~~l--~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 60 SYYSSVYYH-NKNPQFNDEIKIQLPPDL--FPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -EE----TT--SS-EEEEEEEEEE-CCC--CTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEEec-CCCCCccEEEEEEcCchh--cccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 456666654 689999999999998753 267899999999762 12 2699999999866
|
|
| >cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.59 Score=35.98 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=58.1
Q ss_pred CCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCCCceeEEEEEeCccccccC
Q 047341 24 RRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 24 G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~D~~LG~~~IpL~~l~~~~ 103 (254)
|..+..|++.++......|.-.. -.+..|+++|.|.+.. ...|.|.||=.|. -.+=|...+.|.+...+
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~LdR------sRELEI~VywrD~--RslCav~~lrLEd~~~~- 75 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELER------SRELEIAVYWRDW--RSLCAVKFLKLEDERHE- 75 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc--cccccccceeEEEeec------ccEEEEEEEEecc--hhhhhheeeEhhhhccc-
Confidence 45688899999876556675432 4689999999999985 7999999997653 12445556667663211
Q ss_pred CCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 104 ATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 104 ~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
...+ -.++|.+...+.|
T Consensus 76 -------~~~~-----lepqg~l~~ev~f 92 (98)
T cd08687 76 -------VQLD-----MEPQLCLVAELTF 92 (98)
T ss_pred -------ceec-----cccccEEEEEEEe
Confidence 1222 2367777777776
|
PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.52 Score=40.76 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=42.9
Q ss_pred CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC--CC-ceeEEEEEeCc
Q 047341 38 TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL--RD-YLIGTVRFLVS 97 (254)
Q Consensus 38 ~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~--~D-~~LG~~~IpL~ 97 (254)
..++|.|... ..+|.|||++.+.|+.+.. ....|.|++++.... ++ ..+|-+.+||-
T Consensus 53 se~~S~V~yH-~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 53 SEYRSFVLYH-NNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred ceEEEEEEEc-CCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 3567877654 7899999999999988643 678899988875521 22 67888888874
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.51 Score=41.01 Aligned_cols=57 Identities=12% Similarity=0.148 Sum_probs=42.9
Q ss_pred CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC--CCC---ceeEEEEEeCc
Q 047341 38 TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY--LRD---YLIGTVRFLVS 97 (254)
Q Consensus 38 ~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~--~~D---~~LG~~~IpL~ 97 (254)
..++|.|..- ..+|.|||++.+.|+.+.. ....|.|.+++... .+| ..+|-+.+||-
T Consensus 53 se~~S~V~Yh-~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQ-VDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEee-cCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 3568877553 6899999999999987643 68899999987642 123 67888888874
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.88 Score=36.91 Aligned_cols=57 Identities=16% Similarity=0.255 Sum_probs=37.5
Q ss_pred EeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCCC-C----ceeEEEEEeCcc
Q 047341 41 CTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYLR-D----YLIGTVRFLVSN 98 (254)
Q Consensus 41 rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~~-D----~~LG~~~IpL~~ 98 (254)
.|+...-...++.|||.+.|++.-..+. ....|.|.||...... . ..||.+.++|=+
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LP-r~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd 84 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLP-REARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFD 84 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-
T ss_pred eccccccccccceEeeEEEeecChHHCC-hhHeEEEEEEEecCCCccccceeEEEEEEEEeEC
Confidence 5554432126999999999987543331 4678999999877433 3 689998888744
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins | Back alignment and domain information |
|---|
Probab=89.55 E-value=1.6 Score=36.96 Aligned_cols=55 Identities=9% Similarity=0.226 Sum_probs=40.3
Q ss_pred EEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC------CCceeEEEEEeCcc
Q 047341 40 LCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL------RDYLIGTVRFLVSN 98 (254)
Q Consensus 40 ~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~------~D~~LG~~~IpL~~ 98 (254)
++| +... ..+|.|+|+|.+.++... .+...|.|++++.... ....+|-+.+||-+
T Consensus 55 ~~s-v~~~-~k~p~f~deiKi~LP~~l--~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTS-VVYY-HKNPVFNDEIKIQLPADL--TPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEE-EEEc-CCCCCCceeEEEecCCcc--CCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 344 4434 389999999999997643 2578999999987622 25688988888864
|
Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=87.37 E-value=5.1 Score=30.61 Aligned_cols=74 Identities=18% Similarity=0.210 Sum_probs=45.1
Q ss_pred EEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 6 LEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 6 L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
+.+.+..++++.-. ......+-||.+.+ ++. ....|+.. .....+.|||-+.|++.-..+. ....|.|.||+
T Consensus 13 ~~~~~~~~~~~~l~-~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~-~~~~~~~Wnewl~f~i~i~~LP-r~a~L~~~i~~ 89 (100)
T smart00142 13 LVITIALIHGIPLN-WSRDYSDLYVEIQLYHGGKLLCLPVSTSYK-PFFPSVKWNEWLTFPIQISDLP-REARLCITIYE 89 (100)
T ss_pred eEEEEEEeeCCCcc-cccCcceEEEEEEEEECCEEccCcEEeccc-CCCCCcccceeEEccCchhcCC-hhhEEEEEEEE
Confidence 55666777666543 22112478888876 222 12244432 3355699999999987654331 36789999998
Q ss_pred cC
Q 047341 81 SG 82 (254)
Q Consensus 81 ~d 82 (254)
..
T Consensus 90 ~~ 91 (100)
T smart00142 90 VK 91 (100)
T ss_pred ee
Confidence 54
|
Outlier of C2 family. |
| >cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins | Back alignment and domain information |
|---|
Probab=85.41 E-value=3.7 Score=35.14 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=41.9
Q ss_pred CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC----C---CceeEEEEEeCc
Q 047341 38 TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL----R---DYLIGTVRFLVS 97 (254)
Q Consensus 38 ~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~----~---D~~LG~~~IpL~ 97 (254)
..+.|.|... +.+|.|+|.|.+.++... .+...|.|+.++.... + ...+|-+.+||-
T Consensus 54 ~~~~S~V~yH-nk~P~f~DEiKi~LP~~l--~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~ 117 (179)
T cd08696 54 TEAYTAVTYH-NKSPDFYDEIKIKLPADL--TDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLL 117 (179)
T ss_pred eeEEEEEEEe-CCCCcccceEEEEcCCCC--CCCeEEEEEEEEeeccccccCCCccceEEEEEEeee
Confidence 3467777664 789999999999988743 2578899999986521 1 356888888874
|
Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand |
| >KOG1327 consensus Copine [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.42 E-value=4 Score=40.50 Aligned_cols=59 Identities=24% Similarity=0.298 Sum_probs=44.9
Q ss_pred EEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCC-----CCCceeEEEEEeCccccccC
Q 047341 40 LCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGY-----LRDYLIGTVRFLVSNISLSV 103 (254)
Q Consensus 40 ~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~-----~~D~~LG~~~IpL~~l~~~~ 103 (254)
.||.++++ .+||.|-++|.+..-- +..+.|.|+++|.+. ...+|+|++.-.+..+....
T Consensus 43 ~rte~i~~-~~~p~f~~~~~l~y~f----E~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~ 106 (529)
T KOG1327|consen 43 GRTEVIRN-VLNPFFTKKFLLQYRF----EKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS 106 (529)
T ss_pred cceeeeec-cCCccceeeechhhee----eeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence 37777775 8999999988765432 146889999999873 24789999999998876544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-07
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLCTRVDRAGAESPIWNEKFLF 60
L + +I A L Y V++ D K T+V R +P++NE+F F
Sbjct: 18 NNQLLVGIIQAAELP-ALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTF 75
Query: 61 KVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLS 102
KV L+ +T + + +Y + + +IG + ++ +
Sbjct: 76 KVPYSELAGKT--LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 116
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 9/98 (9%)
Query: 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLC----TRVDRAGAESPIWNEK 57
L ++++ A+ LK Y + + + K T + + +P +NE
Sbjct: 148 TAGKLTVVILEAKNLK-KMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNES 205
Query: 58 FLFKVTPEFLSSETSAISVEIYASGYL-RDYLIGTVRF 94
F F+V E + + V + + ++ IG V
Sbjct: 206 FSFEVPFEQIQKVQ--VVVTVLDYDKIGKNDAIGKVFV 241
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 5e-07
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLF 60
+L + + A+ + TY + + + K T R P W + F+F
Sbjct: 2 GVMSLLCVGVKKAKFDGAQEK----FNTYVTLKVQN-VKSTTIAVRGS--QPSWEQDFMF 54
Query: 61 KVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLS 102
++ + ++VE++ G + D ++GTV + I S
Sbjct: 55 EI-----NRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQS 91
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 1e-06
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 12/102 (11%)
Query: 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLF 60
+L + + A+ + TY + + + + T R P W + F+F
Sbjct: 11 GILSLLCVGVKKAKFDGAQEK----FNTYVTLKVQN-VESTTIAVRG--SQPSWEQDFMF 63
Query: 61 KVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISLS 102
++ + ++VE++ G + D ++GTV + I S
Sbjct: 64 EI-----NRLDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQS 100
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-06
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLCTRVDRAGAESPIWNEKFLF 60
+ L + ++ A L Y +++ D K T+V R +PI+NE F F
Sbjct: 19 SDQLVVRILQALDLP-AKDSNGFSDPYVKIYLLPDRKKKFQTKVHR-KTLNPIFNETFQF 76
Query: 61 KVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRF 94
V L+ + +Y + R LIG V
Sbjct: 77 SVPLAELAQRK--LHFSVYDFDRFSRHDLIGQVVL 109
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 5e-04
Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLC----TRVDRAGAESPIWNEKF 58
+L + +I A LK Y + S + T + + +P +NE
Sbjct: 151 AGLLTVTIIKASNLK-AMDLTGFSDPYVKASLISEGRRLKKRKTSIKK-NTLNPTYNEAL 208
Query: 59 LFKVTPEFLSSETSAISVEIYASGYL-RDYLIGTVRF 94
+F V PE + + +S+ + + + +IG R
Sbjct: 209 VFDVAPESVENVG--LSIAVVDYDCIGHNEVIGVCRV 243
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 3e-06
Identities = 21/109 (19%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQ------TYALVWI--DSSTKLCTRVDRAGAESPIW 54
L + +I A+ L P S Q Y + + D T V R + P++
Sbjct: 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKR-KTQKPVF 83
Query: 55 NEKFLFKVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLS 102
E++ F++ T + + + + R +IG V + + L
Sbjct: 84 EERYTFEIPFLEAQRRT--LLLTVVDFDKFSRHCVIGKVSVPLCEVDLV 130
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 6e-06
Identities = 19/134 (14%), Positives = 42/134 (31%), Gaps = 18/134 (13%)
Query: 5 ILEIILISAQGLKSPSSKMRRMQT---------YALVWIDSSTKLCTRVDRAGAESPIWN 55
L + + A GL+ +R Y V +D T + P +N
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQ-KTNKPTYN 88
Query: 56 EKFLFKVTPEFLSSETSAISVEIY-ASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQ 114
E+F VT + + + ++ + D+ + + +
Sbjct: 89 EEFCANVT------DGGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVD 142
Query: 115 IRRPSGRFQGVLSI 128
+ P G+ V+++
Sbjct: 143 L-EPEGKVFVVITL 155
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 1e-05
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 8/96 (8%)
Query: 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTP 64
LE++L+SA+GL+ + M Y + + + V +P WNE F+F V
Sbjct: 11 TLEVVLVSAKGLEDADF-LNNMDPYVQLTCRT-QDQKSNVAEGMGTTPEWNETFIFTV-- 66
Query: 65 EFLSSETSAISVEIYAS-GYLRDYLIGTVRFLVSNI 99
S T+ + +I+ D +G + +
Sbjct: 67 ---SEGTTELKAKIFDKDVGTEDDAVGEATIPLEPV 99
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 1e-05
Identities = 24/104 (23%), Positives = 42/104 (40%), Gaps = 7/104 (6%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLCTRVDRAGAESPIWNEKFLF 60
+ + + A+GL + + Y + I + K+ TRV R P ++E F F
Sbjct: 21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLR-KTLDPAFDETFTF 79
Query: 61 -KVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLS 102
+ + + I + + RD +IG V +S I LS
Sbjct: 80 YGIPYTQIQELA--LHFTILSFDRFSRDDIIGEVLIPLSGIELS 121
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQT--YALVWI--DSSTKLCTRVDRAGAESPIWNEKF 58
+ ++++ A + + Y ++I ++ TR +P+WNE F
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDI-NPVWNETF 60
Query: 59 LFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNISL 101
F + P + + + + + + Y+ D +GT F VS++ +
Sbjct: 61 EFILDPN----QENVLEITLMDANYVMDETLGTATFTVSSMKV 99
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 17/105 (16%), Positives = 39/105 (37%), Gaps = 8/105 (7%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI----DSSTKLCTRVDRAGAESPIWNEKF 58
TQ L + + L +R Y ++ K T + R +P+++E
Sbjct: 22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR-DTVNPLYDETL 80
Query: 59 LFKVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLS 102
+++ L+ T + ++ G + R+ +G + + L
Sbjct: 81 RYEIPESLLAQRT--LQFSVWHHGRFGRNTFLGEAEIQMDSWKLD 123
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-05
Identities = 14/106 (13%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI-----DSSTKLCTRVDRAGAESPIWNEK 57
+ I++I L + + + + V + ++ TR +++ ++NE
Sbjct: 42 NKQFAILIIQLSNLSALLQQ-QDQKVNIRVAVLPCSESTTCLFRTRPLD-ASDTLVFNEV 99
Query: 58 FLFKVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLS 102
F ++ L +T + V++ + + +G + ++ + S
Sbjct: 100 FWVSMSYPALHQKT--LRVDVCTTDRSHLEECLGGAQISLAEVCRS 143
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 6e-05
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 6 LEIILISAQGLKSPSSKMRRMQT---YALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKV 62
L+I +ISA+ + + Y V +D +K T SP W + V
Sbjct: 38 LQITVISAKLKE----NKKNWFGPSPYVEVTVDGQSK-KTEKCN-NTNSPKWKQPLTVIV 91
Query: 63 TPEFLSSETSAISVEIY-ASGYLRDYLIGTVRFLVSNI 99
TP S + ++ D L+GT +
Sbjct: 92 TPV------SKLHFRVWSHQTLKSDVLLGTAALDIYET 123
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 2e-04
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLCTRVDRAGAESPIWNEKFLF 60
L + +I A L Y V++ D K T+V R +P++NE+F F
Sbjct: 33 NNQLLVGIIQAAELP-ALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTF 90
Query: 61 KVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLS 102
KV L +T + + +Y + + +IG + ++ +
Sbjct: 91 KVPYSELGGKT--LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 131
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 4e-04
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 18/110 (16%)
Query: 1 MATQILEIILISAQGLKSPSSKMRRMQT----------YALVWIDSSTKLCTRVDRAGAE 50
+ +L+I + A LK + +R Y + +D S T +
Sbjct: 3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT-N 61
Query: 51 SPIWNEKFLFKVTPEFLSSETSAISVEIY-ASGYLRDYLIGTVRFLVSNI 99
SP W+++F+ V I + ++ + D + +
Sbjct: 62 SPAWHDEFVTDVCNG------RKIELAVFHDAPIGYDDFVANCTIQFEEL 105
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 38.6 bits (90), Expect = 5e-04
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLCTRVDRAGAESPIWNEKFLF 60
L + +I A L Y V++ D K T+V R +P++NE+F F
Sbjct: 41 NNQLLVGIIQAAELP-ALDMGGTSDPYVKVFLLPDKKKKFETKVHR-KTLNPVFNEQFTF 98
Query: 61 KVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRFLVSNISLS 102
KV L +T + + +Y + + +IG + ++ +
Sbjct: 99 KVPYSELGGKT--LVMAVYDFDRFSKHDIIGEFKVPMNTVDFG 139
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 37.7 bits (88), Expect = 8e-04
Identities = 11/68 (16%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 36 SSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG-YLRDYLIGTVRF 94
S + T + + W E + + E L + T +++ + + R + G +R
Sbjct: 57 GSVEAQTALKK-RQLHTTWEEGLVLPLAEEELPTAT--LTLTLRTCDRFSRHSVAGELRL 113
Query: 95 LVSNISLS 102
+ S+
Sbjct: 114 GLDGTSVP 121
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 37.7 bits (88), Expect = 9e-04
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 8/101 (7%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI----DSSTKLCTRVDRAGAESPIWNEKF 58
++L + +I +GL S Y + + T+ P ++E F
Sbjct: 26 DRVLLLHIIEGKGLISKQPGTC--DPYVKISLIPEDSRLRHQKTQTVPD-CRDPAFHEHF 82
Query: 59 LFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNI 99
F V E ++V AS + LIG + F V ++
Sbjct: 83 FFPVQEEDDQKRLL-VTVWNRASQSRQSGLIGCMSFGVKSL 122
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.9 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.89 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.88 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.88 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.88 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.87 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.87 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.87 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.86 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.86 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.86 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.85 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.81 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.8 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.79 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.79 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.79 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.79 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.79 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.79 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.79 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.79 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.78 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.78 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.78 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.78 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.78 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.78 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.77 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.77 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.77 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.77 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.76 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.76 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.76 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.75 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.75 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.75 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.71 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.7 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.66 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.62 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.58 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.56 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 99.53 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.53 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 99.5 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.49 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.41 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 99.0 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.89 | |
| 2yrb_A | 156 | Protein fantom; beta sandwich, NPPSFA, national pr | 96.49 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 92.18 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 91.51 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 90.99 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 82.21 |
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.1e-23 Score=165.22 Aligned_cols=124 Identities=19% Similarity=0.364 Sum_probs=107.2
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
..+.|+|+|++|++|+.. +..|.+||||+|.+++. +++|+++++++.||+|||+|.|.+.. ....|.|+|||+
T Consensus 8 ~~~~L~v~v~~a~~L~~~-d~~g~~dpyv~v~~~~~-~~kT~~~~~~~~nP~Wne~f~f~v~~-----~~~~l~~~V~d~ 80 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDA-DFLNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSE-----GTTELKAKIFDK 80 (136)
T ss_dssp CEEEEEEEEEEEEECSSC-CSSCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEES-----SCCEEEEEECCS
T ss_pred CcEEEEEEEEeccCCCCc-ccCCCcCceEEEEECCc-cceeEeccCCCCCCccCcEEEEEECC-----CCCEEEEEEEEC
Confidence 568999999999999998 78899999999999875 56999987459999999999999986 478999999999
Q ss_pred C-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCC
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGS 136 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~ 136 (254)
+ ..+|++||++.|+|.++..... ....||+|. ++++..|+|+|+++|.|..
T Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~---~~~~w~~L~-~~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 81 DVGTEDDAVGEATIPLEPVFVEGS---IPPTAYNVV-KDEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSCTTTCCSEEEEEESHHHHHHSE---EEEEEEEEE-ETTEEEEEEEEEEEEEECC
T ss_pred CCCCCCceEEEEEEEHHHhccCCC---CCcEEEEee-cCCccCEEEEEEEEEEeCC
Confidence 9 4579999999999999854331 245789987 5678899999999999874
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-22 Score=162.40 Aligned_cols=125 Identities=21% Similarity=0.404 Sum_probs=98.2
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+++|+++++ +.||+|||+|.|.+.. ....|.|+
T Consensus 19 ~~~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~-----~~~~l~~~ 91 (153)
T 3b7y_A 19 SRIVRVRVIAGIGLAKK-DILGASDPYVRVTLYDPMNGVLTSVQTKTIKK-SLNPKWNEEILFRVHP-----QQHRLLFE 91 (153)
T ss_dssp CEEEEEEEEEEESCC--------CCEEEEEEEEETTTEEEEEEECCCCSS-CSSCCCCEEEEEEECT-----TTCEEEEE
T ss_pred ccEEEEEEEEeeCCCCC-CCCCCCCcEEEEEEECCCCccceeeeCccccC-CCCCCCCCEEEEEecC-----CCCEEEEE
Confidence 46899999999999998 78899999999999742 4679999876 8999999999999986 46899999
Q ss_pred EEecCC-CCCceeEEEEEeCccccccCCC--CCCeeEEEEeeCC--CCCcceEEEEEEEEEe
Q 047341 78 IYASGY-LRDYLIGTVRFLVSNISLSVAT--KTPSFTAFQIRRP--SGRFQGVLSIGSMLID 134 (254)
Q Consensus 78 V~D~d~-~~D~~LG~~~IpL~~l~~~~~~--~~~~~~~~~L~~~--~g~~~G~I~lsl~f~p 134 (254)
|||++. .+|++||++.|+|.++...... ......||+|... .++..|+|+|+++|.|
T Consensus 92 V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 92 VFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp EEECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred EEECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence 999994 5799999999999998776531 1123478998643 3467899999999985
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=166.01 Aligned_cols=127 Identities=21% Similarity=0.399 Sum_probs=99.9
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
+.+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+++|+++++ ++||+|||+|.|.+.. ....|.|
T Consensus 6 ~~g~L~V~v~~a~~L~~~-d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~-----~~~~L~~ 78 (176)
T 3m7f_B 6 DTRVVRVKVIAGIGLAKK-DILGASDPYVRVTLYDPMSGILTSVQTKTIKK-SLNPKWNEEILFRVLP-----QRHRILF 78 (176)
T ss_dssp TCEEEEEEEEEEESCC----CCCCCCEEEEEEEEETTTEEEEEEECCCCSS-CSSCEEEEEEEEEECT-----TTCEEEE
T ss_pred CcEEEEEEEEEeeCCCCc-CCCCCcCcEEEEEEECCCCCcccceeCceECC-CCCCcccceEEEEEcC-----CCCEEEE
Confidence 468999999999999998 78899999999999752 4579999875 9999999999999986 3679999
Q ss_pred EEEecC-CCCCceeEEEEEeCccccccCCC--CCCeeEEEEeeC--CCCCcceEEEEEEEEEeC
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSNISLSVAT--KTPSFTAFQIRR--PSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~l~~~~~~--~~~~~~~~~L~~--~~g~~~G~I~lsl~f~p~ 135 (254)
+|||++ ..+|++||++.|+|.++...... ......||+|.. .+++..|+|+|+++|.|.
T Consensus 79 ~V~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 79 EVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp EEEECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred EEEECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence 999998 55799999999999999876531 112237888874 345679999999999976
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=155.93 Aligned_cols=124 Identities=15% Similarity=0.182 Sum_probs=102.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.+.|+|+|++|++|+.. +. |.+||||+|.+.+. +++|+++++ +.||+|||+|.|.+....+ .....|.|+|||++
T Consensus 6 ~g~L~v~v~~a~~L~~~-~~-g~~dpyv~v~~~~~-~~kT~v~~~-t~nP~wne~f~f~v~~~~~-~~~~~l~i~V~d~d 80 (140)
T 2dmh_A 6 SGMLRVIVESASNIPKT-KF-GKPDPIVSVIFKDE-KKKTKKVDN-ELNPVWNEILEFDLRGIPL-DFSSSLGIIVKDFE 80 (140)
T ss_dssp CCEEEEEEEEEESCCCC-SS-SCCCEEEEEECSSC-EEECCCCCS-CSSCEEEEEEEEECSSCCC-CTTCEEEEEEEETT
T ss_pred CcEEEEEEEEeeCCCCC-CC-CCCCeEEEEEECCE-eEEeeeecC-CCCCccCcEEEEEeccccc-CCCCEEEEEEEECC
Confidence 57899999999999998 77 99999999999865 679999875 8999999999999975311 14689999999999
Q ss_pred -CCCCceeEEEEEeCccccccCCCCCCeeEEEE---eeCCCC-CcceEEEEEEEEEeC
Q 047341 83 -YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQ---IRRPSG-RFQGVLSIGSMLIDG 135 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~---L~~~~g-~~~G~I~lsl~f~p~ 135 (254)
..+|++||++.|+|.++..+.. ...||+ |..+.+ ...|+|+|+++|.|.
T Consensus 81 ~~~~~~~lG~~~i~l~~l~~~~~----~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 81 TIGQNKLIGTATVALKDLTGDQS----RSLPYKLISLLNEKGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp CSSSCCCCEEEEEEGGGTCSSSC----EEEEEEEEEEECTTCCEEEEEEEEEEEECCC
T ss_pred CCCCCceEEEEEEEHHHhccCCC----ceeEEeeeeccCCCCCCCCCEEEEEEEEECC
Confidence 4578999999999999865542 345665 766543 568999999999985
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-22 Score=159.06 Aligned_cols=119 Identities=18% Similarity=0.294 Sum_probs=102.7
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
..+.|+|+|++|++|++. +..|.+||||+|.+.+. +++|+++++ +.||+|||+|.|.+.. ....|.|+|||+
T Consensus 11 ~~~~L~v~v~~a~~L~~~-d~~g~~dpyv~v~~~~~-~~kT~~~~~-t~nP~wne~f~f~~~~-----~~~~l~i~V~d~ 82 (133)
T 2ep6_A 11 DVGILQVKVLKAADLLAA-DFSGKSDPFCLLELGND-RLQTHTVYK-NLNPEWNKVFTFPIKD-----IHDVLEVTVFDE 82 (133)
T ss_dssp CSEEEEEEEEEEESCCCS-SSSSCCCEEEEEEETTE-EEECCCCSS-CSSCCCCEEEEEEESC-----TTCEEEEEEEEE
T ss_pred CceEEEEEEEeeECCCCC-CCCCCcCeEEEEEECCE-EEEeeeecC-CCCCccccEEEEEecC-----CCCEEEEEEEEC
Confidence 468999999999999998 78899999999999875 679999876 8999999999999986 368899999999
Q ss_pred CCC-CCceeEEEEEeCccccccCCCCCCeeEEEEeeCCC--CCcceEEEEEEEEEe
Q 047341 82 GYL-RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS--GRFQGVLSIGSMLID 134 (254)
Q Consensus 82 d~~-~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~--g~~~G~I~lsl~f~p 134 (254)
+.. +|++||++.|+|.++..+. ..||+|..+. +...|+|+|+++|..
T Consensus 83 d~~~~~~~lG~~~i~l~~l~~~~------~~w~~L~~~~~~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 83 DGDKPPDFLGKVAIPLLSIRDGQ------PNCYVLKNKDLEQAFKGVIYLEMDLIY 132 (133)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC------CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred CCCCCCCeeEEEEEEHHHccCCC------ceEEEeecCCCCCccceEEEEEEEEEe
Confidence 954 6999999999999986532 3688887543 468999999999974
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-21 Score=155.31 Aligned_cols=118 Identities=19% Similarity=0.302 Sum_probs=100.5
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
..+.|+|+|++|++|+.. +..|.+||||+|.+++ .+++|+++++ ++||+|||+|.|.+.. ....|.|+|||+
T Consensus 15 ~~~~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~-~~~kT~~~~~-t~nP~Wne~f~f~v~~-----~~~~l~~~v~d~ 86 (148)
T 3kwu_A 15 WSAKISITVVCAQGLQAK-DKTGSSDPYVTVQVGK-TKKRTKTIYG-NLNPVWEENFHFECHN-----SSDRIKVRVLDE 86 (148)
T ss_dssp CCEEEEEEEEEEESCCCC-STTSCCCEEEEEEETT-EEEECCCCCS-CSSCEEEEEEEEEECS-----TTCEEEEEEEEC
T ss_pred cccEEEEEEEeeeCCCCC-CCCCCcCeEEEEEECC-EEEECCccCC-CCCCCcccEEEEEecC-----CCCEEEEEEEEC
Confidence 468999999999999998 7889999999999965 4679999875 8999999999999976 367899999999
Q ss_pred CC------------CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEEE
Q 047341 82 GY------------LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSMLI 133 (254)
Q Consensus 82 d~------------~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f~ 133 (254)
+. .+|++||++.|+|.++... ...||+|... .+...|+|+|+++|.
T Consensus 87 d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~------~~~w~~L~~~~~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 87 DDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGE------MDVWYNLDKRTDKSAVSGAIRLHISVE 146 (148)
T ss_dssp CCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCSE------EEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred CCCccccccccccCCCCccEEEEEEEHHHCcCC------CCEEEEcccCCCCCCCceEEEEEEEEE
Confidence 95 4799999999999998321 3578888743 345789999999985
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=6.6e-22 Score=158.23 Aligned_cols=119 Identities=16% Similarity=0.206 Sum_probs=98.2
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCC-----------CCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCC
Q 047341 2 ATQILEIILISAQGLKSPSSKMRR-----------MQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSE 70 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~-----------~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~ 70 (254)
..+.|+|+|++|++|++. +..++ +||||+|.+++....+|++.++ ++||+|||+|.|.+..
T Consensus 4 ~~g~L~v~v~~a~~L~~~-d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~-t~nP~WnE~f~f~v~~------ 75 (136)
T 1gmi_A 4 FNGLLKIKICEAVSLKPT-AWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCN------ 75 (136)
T ss_dssp EEEEEEEEEEEEESCCCC-HHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE------
T ss_pred cceEEEEEEEeCcCCCCc-ccccccccccccCCcCcCcEEEEEECCeEeeeeeEECC-CcCCccCCEEEEEecC------
Confidence 468999999999999987 65444 9999999998765578888765 9999999999999975
Q ss_pred CcEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 71 TSAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 71 ~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
...|.|+|||++ ..+|++||.+.|+|.++..... .....|+.|. ++|+|+|.++|.+.
T Consensus 76 ~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~--~~~~~w~~L~-----~~G~i~l~l~~~~~ 134 (136)
T 1gmi_A 76 GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS--RHFEDWIDLE-----PEGKVYVIIDLSGS 134 (136)
T ss_dssp ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC--SEEEEEEECB-----SSCEEEEEEEEEEE
T ss_pred CCEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCC--CCccEEEEcC-----CCeEEEEEEEEEec
Confidence 489999999999 5579999999999999876532 1125677763 48999999999864
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-21 Score=162.38 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=97.6
Q ss_pred cccEEEEEEEeeeCCCCCCCC----------CCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCC
Q 047341 2 ATQILEIILISAQGLKSPSSK----------MRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSET 71 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~----------~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~ 71 (254)
..+.|+|+|++|++|++. +. .|.+||||+|.+++....||++.++ ++||+|||+|.|.+.+ .
T Consensus 27 ~~g~L~V~VieA~~L~~~-D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~k-tlnP~WNE~F~f~v~~------~ 98 (157)
T 2fk9_A 27 FNGYLRVRIGEAVGLQPT-RWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQK-TNKPTYNEEFCANVTD------G 98 (157)
T ss_dssp EEEEEEEEEEEEECCCCC-HHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE------E
T ss_pred CccEEEEEEEEEECCCCc-cccccccccccCCCCCCeEEEEEECCEeeEEeeecCC-CCCCccCcEEEEEcCC------C
Confidence 357899999999999987 62 2679999999998766679998765 9999999999999975 5
Q ss_pred cEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 72 SAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 72 ~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
..|.|+|||++ ..+|++||.+.|||.++..+...+.....||+|. ++|.|+|.+.|.
T Consensus 99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~-----~~G~i~l~l~~~ 156 (157)
T 2fk9_A 99 GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-----PEGKVFVVITLT 156 (157)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB-----SSCEEEEEEEEC
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC-----CCcEEEEEEEEE
Confidence 68999999998 4569999999999999886511112346889984 389999999884
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=4.6e-21 Score=150.47 Aligned_cols=118 Identities=19% Similarity=0.386 Sum_probs=96.1
Q ss_pred ccEEEEEEEeeeCCCCC--CCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSP--SSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~--~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.+ .+..|.+||||+|.+++ ..+++|+++++ +.||+|||+|.|.+... ....|.|+|
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~----~~~~l~i~V 76 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN----QENVLEITL 76 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT----SCCEEEEEE
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCC-CCCCcccceEEEEecCC----CCCEEEEEE
Confidence 57899999999999984 14568899999999986 36789999875 89999999999999642 478999999
Q ss_pred EecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEE
Q 047341 79 YASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSML 132 (254)
Q Consensus 79 ~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f 132 (254)
||++..+|++||++.|+|.++..+. ....||+|.. ...|.|+|++..
T Consensus 77 ~d~d~~~~~~iG~~~i~l~~l~~~~----~~~~~~~L~~---~~~g~i~~~le~ 123 (126)
T 1rlw_A 77 MDANYVMDETLGTATFTVSSMKVGE----KKEVPFIFNQ---VTEMVLEMSLEV 123 (126)
T ss_dssp EECCSSCCEEEEEEEEEGGGSCTTC----EEEEEEEETT---TEEEEEEEEEEC
T ss_pred EECCCCCCceeEEEEEEHHHccCCC----cEEEEEEcCC---CceEEEEEEEEe
Confidence 9999667999999999999986543 3467888853 346666666553
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=151.29 Aligned_cols=120 Identities=18% Similarity=0.313 Sum_probs=97.6
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC-cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS-STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~-~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
+...|+|+|++|++|++. +..|.+||||+|.+++ ..+++|+++++ ++||+|||+|.|.+.. ...|.|+|||
T Consensus 3 ~~~~L~V~v~~a~~L~~~-d~~g~sDpyv~v~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~------~~~l~~~v~d 74 (132)
T 3pyc_A 3 EFIKIRLTVLCAKNLAKK-DFFRLPDPFAKIVVDGSGQCHSTDTVKN-TLDPKWNQHYDLYVGK------TDSITISVWN 74 (132)
T ss_dssp SEEEEEEEEEEEESCCCC-STTCCCCEEEEEEETTTCCEEECCCCSS-CSSCEEEEEEEEEEET------TCCEEEEEEE
T ss_pred CeEEEEEEEEEeECCCCC-CCCCCcCeEEEEEECCCCceEECCccCC-CCCCCccCEEEEEeCC------CCEEEEEEEE
Confidence 567899999999999998 8899999999999976 46789999865 9999999999999975 3459999999
Q ss_pred cCCC-C---CceeEEEEEeCccccccCCCCCCeeEEEEeeCC--C--CCcceEEEEEEEE
Q 047341 81 SGYL-R---DYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP--S--GRFQGVLSIGSML 132 (254)
Q Consensus 81 ~d~~-~---D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~--~--g~~~G~I~lsl~f 132 (254)
++.. + |++||++.|++.++...... ...+++|... . ....|+|+|++++
T Consensus 75 ~d~~~~~~~d~~lG~~~i~l~~l~~~~~~---~~~~~~L~~~~~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 75 HKKIHKKQGAGFLGCVRLLSNAISRLKDT---GYQRLDLCKLNPSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp GGGTTSSTTTTEEEEEEECHHHHHHHTTS---CCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred CCCCCCCCCCCceEEEEEeHHHhhccccc---CcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence 9944 3 89999999999988544332 2356777643 1 2469999999975
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-21 Score=155.27 Aligned_cols=120 Identities=16% Similarity=0.235 Sum_probs=87.5
Q ss_pred CcccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 1 MATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 1 M~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
|+++.|.|+|++|++|.. .|.+||||+|. .+ ..+|+++++++.||+|||+|.|.+.. ....|.|+|||
T Consensus 2 ~~~~~L~V~V~~A~~l~~----~g~~DPYv~v~--~~-~~kt~~~~~~t~nP~WnE~f~f~v~~-----~~~~L~~~V~D 69 (131)
T 2cjt_A 2 GVMSLLCVGVKKAKFDGA----QEKFNTYVTLK--VQ-NVKSTTIAVRGSQPSWEQDFMFEINR-----LDLGLTVEVWN 69 (131)
T ss_dssp CCCEEEEEEEEEEECSSC----GGGCEEEEEEE--ET-TEEEECCCEESSSCEEEEEEEEEECC-----CSSEEEEEEEE
T ss_pred CcceEEEEEEEEeECCCC----CCCcCeEEEEE--ec-CEEEeEecCCCCCceECCEEEEEEeC-----CCCeEEEEEEE
Confidence 899999999999998853 47899999999 23 44676665458999999999999985 35689999999
Q ss_pred cCCCCCceeEEEEEeCccccccCCCCC--CeeEEEEeeCCCCCcceE-------EEEEEEE
Q 047341 81 SGYLRDYLIGTVRFLVSNISLSVATKT--PSFTAFQIRRPSGRFQGV-------LSIGSML 132 (254)
Q Consensus 81 ~d~~~D~~LG~~~IpL~~l~~~~~~~~--~~~~~~~L~~~~g~~~G~-------I~lsl~f 132 (254)
++..+|++||++.|||.++......+. ....+|++..++|+.+|+ +.+.++|
T Consensus 70 ~d~~~dd~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~p~~~~~~~~~~~ 130 (131)
T 2cjt_A 70 KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHF 130 (131)
T ss_dssp CCSSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC----------CCSCCCCCEEEEEEEE
T ss_pred CCCCCCCeEEEEEEEHHHhhhcCCCCccccEEcccccccCCCcCcceECCCccEEEEEEEe
Confidence 996679999999999999876553332 123445555456666666 8888877
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=157.63 Aligned_cols=124 Identities=22% Similarity=0.215 Sum_probs=100.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.+.|+|+|++|++|++. +..+.+||||+|.+++ .+++|+++++ ++||+|||+|.|.+.+ ...|.|+|||++
T Consensus 35 ~~~L~V~V~~A~~L~~~-~~~~~sDPYv~v~~~~-~~~kT~v~~~-tlnP~Wne~f~f~v~~------~~~L~~~V~D~d 105 (173)
T 2nq3_A 35 KSQLQITVISAKLKENK-KNWFGPSPYVEVTVDG-QSKKTEKCNN-TNSPKWKQPLTVIVTP------VSKLHFRVWSHQ 105 (173)
T ss_dssp CEEEEEEEEEEEECCCC---CCCCCEEEEEEETT-EEEECCCCSS-CSSCEEEEEEEEEECT------TCEEEEEEEECC
T ss_pred ceEEEEEEEEeECCCCc-ccCCCCCeEEEEEECC-EEeEccccCC-CCCCeECCEEEEEeCC------CCEEEEEEEECC
Confidence 56899999999999955 3445699999999987 5789999875 9999999999999953 789999999999
Q ss_pred -CCCCceeEEEEEeCccccccCCCC-CCeeEEEEeeCC--CCCcceEEEEEEEEEeC
Q 047341 83 -YLRDYLIGTVRFLVSNISLSVATK-TPSFTAFQIRRP--SGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~~~~~-~~~~~~~~L~~~--~g~~~G~I~lsl~f~p~ 135 (254)
..+|++||++.|+|.++....... .....|++|... .....|+|.+.+.|++.
T Consensus 106 ~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 106 TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL 162 (173)
T ss_dssp SSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred CCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence 457899999999999987654311 112568888754 34578999999999965
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=148.41 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=93.7
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+++.|+|+|++|++|.. .|.+||||+|. .+ ..+|++++.++.||+|||+|.|.+.. ....|.|+|||+
T Consensus 12 ~~~~L~V~V~~A~~l~~----~g~~DPYV~v~--~~-~~kt~~~~~~t~nP~WnE~f~f~v~~-----~~~~L~~~V~D~ 79 (167)
T 2cjs_A 12 ILSLLCVGVKKAKFDGA----QEKFNTYVTLK--VQ-NVESTTIAVRGSQPSWEQDFMFEINR-----LDLGLTVEVWNK 79 (167)
T ss_dssp CCCEEEEEEEEEECSSC----GGGCEEEEEEE--ET-TEEEECCCEESSSCEEEEEEEEECCC-----TTSEEEEEEEEC
T ss_pred ceEEEEEEEEEEECCCC----CCCCCeEEEEE--ec-ceEEEEecCCCCCCCCCCEEEEEeeC-----CCCEEEEEEEEC
Confidence 35789999999998842 47899999999 23 45777766558999999999999986 366899999999
Q ss_pred CCCCCceeEEEEEeCccccccCCCCC--CeeEEEEeeCCCCCcce-------EEEEEEEEEeC
Q 047341 82 GYLRDYLIGTVRFLVSNISLSVATKT--PSFTAFQIRRPSGRFQG-------VLSIGSMLIDG 135 (254)
Q Consensus 82 d~~~D~~LG~~~IpL~~l~~~~~~~~--~~~~~~~L~~~~g~~~G-------~I~lsl~f~p~ 135 (254)
+..+|++||++.|+|.++......+. ....+|++..++|+.+| .|.+.++|..+
T Consensus 80 d~~~dd~iG~~~i~L~~l~~~~~~g~~~~~~~~~~~~~~~g~~~g~~~p~~~~lll~~~~e~~ 142 (167)
T 2cjs_A 80 GLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFHRILLDAHFELP 142 (167)
T ss_dssp CSSCCEEEEEEEEEGGGSCBCSSCCCCEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEECC
T ss_pred CCCCCceEEEEEEEHHHhcccCcCCcccceeeeeeeEcCCCCCCceEccccceEEEEEEeecC
Confidence 96689999999999999876553332 23456666555565544 47788888754
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=154.21 Aligned_cols=128 Identities=17% Similarity=0.263 Sum_probs=105.4
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
..+.|+|+|++|++|+.. +..|.+||||+|.+.+ ..+.+|+++++ ++||+|||+|.|.+..+.+ ....|.|+||
T Consensus 17 ~~~~L~v~v~~a~~L~~~-d~~~~~dpyv~v~~~~~~~~~~~T~~~~~-~~nP~wne~f~f~v~~~~~--~~~~l~~~V~ 92 (284)
T 2r83_A 17 QNNQLLVGIIQAAELPAL-DMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--AGKTLVMAVY 92 (284)
T ss_dssp TTTEEEEEEEEEECCCCC-SSSSSCCEEEEEEEETCTTSCEECCCCCS-CSSCEEEEEEEECCCGGGC--TTCEEEEEEE
T ss_pred CCCEEEEEEEEeeCCCCC-CCCCCCCeEEEEEEEcCCCceEeCCcccC-CCCCeeCceEEEEechHHh--CcCEEEEEEE
Confidence 357899999999999998 7889999999999965 35779999875 8999999999999875322 3689999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCC---CCcceEEEEEEEEEeCCC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPS---GRFQGVLSIGSMLIDGSD 137 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~---g~~~G~I~lsl~f~p~~~ 137 (254)
|.+ ...|++||++.|+|.++..+. ....||+|.... ....|+|.+++.|.|...
T Consensus 93 d~d~~~~~~~lG~~~i~l~~l~~~~----~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~ 150 (284)
T 2r83_A 93 DFDRFSKHDIIGEFKVPMNTVDFGH----VTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG 150 (284)
T ss_dssp ECCSSSCCCEEEEEEEEGGGCCCSS----CEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT
T ss_pred ECCCCCCCceeEEEEEcchhcccCC----cceeEEEeeccccccccccccEEEEEEecCcCC
Confidence 999 457999999999999986543 246788987542 246899999999987643
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-19 Score=142.46 Aligned_cols=105 Identities=20% Similarity=0.303 Sum_probs=89.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+.... ....|.|+|
T Consensus 30 ~~~L~v~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~---~~~~L~i~V 104 (149)
T 1a25_A 30 REVLIVVVRDAKNLVPM-DPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESD---KDRRLSVEI 104 (149)
T ss_dssp SSEEEEEEEEEESCCCC-STTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGG---GGCEEEEEE
T ss_pred CCEEEEEEEEeeCCCCC-CCCCCcCeEEEEEEECCCCCcceEecceeCC-CCCCcCCcEEEEEecccc---CCCEEEEEE
Confidence 46799999999999998 7889999999999975 45789999986 999999999999997632 246899999
Q ss_pred EecCC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASGY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
||++. .+|++||++.|+|.++.... ...||+|..
T Consensus 105 ~d~d~~~~~~~iG~~~i~l~~l~~~~-----~~~W~~L~~ 139 (149)
T 1a25_A 105 WDWDLTSRNDFMGSLSFGISELQKAG-----VDGWFKLLS 139 (149)
T ss_dssp EECCSSSCCEEEEEEEEEHHHHTTCC-----EEEEEECBC
T ss_pred EECCCCCCCCEEEEEEEEHHHhCcCc-----cCCeEEccC
Confidence 99994 57999999999999987542 357899865
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=148.47 Aligned_cols=107 Identities=15% Similarity=0.190 Sum_probs=88.9
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC---c--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS---S--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~---~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|++. +..|.+||||+|.+.+ . .++||+++++ ++||+|||+|.|.+....+ ....|.|+
T Consensus 42 ~~~L~V~Vi~a~~L~~~-d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~-tlnP~wnE~F~f~v~~~~l--~~~~L~~~ 117 (155)
T 2z0u_A 42 NKQFAILIIQLSNLSAL-LQQQDQKVNIRVAVLPCSESTTCLFRTRPLDA-SDTLVFNEVFWVSMSYPAL--HQKTLRVD 117 (155)
T ss_dssp TTEEEEEEEEEECGGGT-CCSCCSEEEEEEEEESCSCHHHHEEECCCEEC-CSSEEEEEEEEEECCHHHH--HHCEEEEE
T ss_pred CCEEEEEEEEccCcCCc-ccCCCCCEEEEEEEecCCCCCccceeCCcCCC-CCCCccccEEEEEcCHHHh--CcCEEEEE
Confidence 57899999999999998 8899999999999976 2 3689999986 9999999999999875322 25789999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
|||++ ..+|++||++.|+|.++.... .....||+|.
T Consensus 118 V~d~d~~~~~d~iG~~~i~l~~l~~~~---~~~~~W~~L~ 154 (155)
T 2z0u_A 118 VCTTDRSHLEECLGGAQISLAEVCRSG---ERSTRWYNLL 154 (155)
T ss_dssp EEEECTTSCEEEEEEEEEECTTSCTTC---CCEEEEEEEB
T ss_pred EEECCCCCCCcEEEEEEEEHHHccCCC---CccccceEcc
Confidence 99999 567999999999999985322 2346788874
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=141.41 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=88.8
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecC-CCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTP-EFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~-~~l~~~~~~L~veV~ 79 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+ ..+++|+++++ +.||+|||+|.|.+.+ +.+ ....|.|+||
T Consensus 25 ~~~L~v~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~i~V~ 100 (141)
T 2d8k_A 25 ESTLTVKIMKAQELPAK-DFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKV--VQRILYLQVL 100 (141)
T ss_dssp SCCEEEEEEEEESCCCC-SSSSCCCEEEEEEEESCCSSEEECCCCTT-CSSCCCCEEEEECSCCHHHH--TTSEEEEEEE
T ss_pred CCEEEEEEEEeECCCCC-CCCCCCCcEEEEEEECCCCccEeCceEcC-CCCCccccEEEECccCHHHc--ccCEEEEEEE
Confidence 57899999999999998 7889999999999953 45789999875 9999999999998532 111 3678999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|++ ..+|++||++.|+|.++..+. ....||+|..
T Consensus 101 d~d~~~~~~~iG~~~i~l~~l~~~~----~~~~W~~L~~ 135 (141)
T 2d8k_A 101 DYDRFSRNDPIGEVSIPLNKVDLTQ----MQTFWKDLKP 135 (141)
T ss_dssp ECCSSSSCEEEEEEEEETTTSCTTS----CEEEEECCEE
T ss_pred ECCCCCCCcEEEEEEEEhhhhcCCC----CccEEEECcC
Confidence 999 457999999999999987654 2468999875
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-19 Score=142.71 Aligned_cols=107 Identities=20% Similarity=0.307 Sum_probs=89.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+....+ ....|.|+|||
T Consensus 41 ~~~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~V~d 116 (152)
T 1rsy_A 41 NNQLLVGIIQAAELPAL-DMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--GGKTLVMAVYD 116 (152)
T ss_dssp TTEEEEEEEEEESCCCC-STTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHH--TTCEEEEEEEE
T ss_pred CCEEEEEEEEeECCCCc-cCCCCcCeEEEEEEEcCCCceEeccccCC-CCCCcCcccEEEeecHHHc--CCCEEEEEEEE
Confidence 57899999999999998 7889999999999953 35779999876 8999999999999865221 36899999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
++ ..+|++||++.|+|.++..+. ....||+|..
T Consensus 117 ~d~~~~~~~iG~~~i~l~~l~~~~----~~~~W~~L~~ 150 (152)
T 1rsy_A 117 FDRFSKHDIIGEFKVPMNTVDFGH----VTEEWRDLQS 150 (152)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSS----CEEEEEECBC
T ss_pred CCCCCCCcEEEEEEEEchhccCCC----CcceEEECCC
Confidence 99 457999999999999986543 2467898864
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.4e-19 Score=142.13 Aligned_cols=113 Identities=15% Similarity=0.301 Sum_probs=90.8
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEe-cCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKV-TPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v-~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+ ..+++|+++++ ++||+|||+|.|.+ ....+ ....|.|+
T Consensus 20 ~~~L~v~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~i~ 95 (141)
T 1v27_A 20 GHQLIVTILGAKDLPSR-EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEIT 95 (141)
T ss_dssp TTEEEEEEEEEESCCCC-SSSCCCCEEEECCCSSCCSSSSCCBCCCCSS-CSSCCCCCCCEECSCCTTGG--GTCEEEEE
T ss_pred CCEEEEEEEEccCCCCc-CCCCCCCCEEEEEEecCCCCCcceeCccccC-CCCCccccEEEEccCCHHHh--cCCEEEEE
Confidence 46899999999999998 7889999999999943 35679999876 99999999999994 43211 35899999
Q ss_pred EEecCCC-C--CceeEEEEEeCccccccCCCCCCeeEEEEeeCC-CCCcce
Q 047341 78 IYASGYL-R--DYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP-SGRFQG 124 (254)
Q Consensus 78 V~D~d~~-~--D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~-~g~~~G 124 (254)
|||++.. . |++||++.|+|.++.... ...||+|... .|+..|
T Consensus 96 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-----~~~W~~L~~~~~g~~sg 141 (141)
T 1v27_A 96 LWDQARVREEESEFLGEILIELETALLDD-----EPHWYKLQTHDSGPSSG 141 (141)
T ss_dssp EEEBCSSSSCCBCCCEEEEEEGGGCCCSS-----EEEEEECBCCSSCCCCC
T ss_pred EEECCCCcCCCCceEEEEEEEccccCCCC-----CCceEECcccccCCCCC
Confidence 9999944 3 899999999999986532 4689999754 444443
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=138.09 Aligned_cols=108 Identities=24% Similarity=0.300 Sum_probs=87.9
Q ss_pred ccEEEEEEEeeeCCCCCCCCC-CCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKM-RRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~-G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +.. |.+||||+|.+.+ ..+++|+++++ ++||+|||+|.|. +..+.+ ....|.|+|
T Consensus 21 ~~~L~v~v~~a~~L~~~-d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~~--~~~~l~i~V 96 (138)
T 1ugk_A 21 RKAFVVNIKEARGLPAM-DEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQI--QELALHFTI 96 (138)
T ss_dssp GTEEEEEEEEEESCCCC-BTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTG--GGCEEEEEE
T ss_pred CCEEEEEEEEeeCCCCC-CCCCCCCCCEEEEEEecCCCceEecCcCcC-CCCCcEeeEEEEcCcCHHHh--ccCEEEEEE
Confidence 56899999999999998 775 8999999999974 36789999875 9999999999996 765322 357999999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
||++ ..+|++||++.|+|.++..... ....|+.|..
T Consensus 97 ~d~d~~~~~~~lG~~~i~l~~l~~~~~---~~~~~~~l~~ 133 (138)
T 1ugk_A 97 LSFDRFSRDDIIGEVLIPLSGIELSEG---KMLMNREIIS 133 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCTTC---CEEEEEECBS
T ss_pred EECCCCCCCcEEEEEEEehhHccCCCC---cchhhhhhhc
Confidence 9999 4578999999999999876542 2345677754
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=6.9e-19 Score=141.24 Aligned_cols=107 Identities=20% Similarity=0.312 Sum_probs=88.9
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEEC--CcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWID--SSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~--~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
.+.|+|+|++|++|+.. +..+.+||||+|.+. +..+.+|+++++ +.||+|||+|.|.+....+ ....|.|+|||
T Consensus 33 ~~~L~v~v~~a~~L~~~-d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~V~d 108 (143)
T 3f04_A 33 NNQLLVGIIQAAELPAL-DMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--GGKTLVMAVYD 108 (143)
T ss_dssp TTEEEEEEEEEECCCCB-GGGBCCCEEEEEEEESCCSCCEECCCCCS-CSSCEEEEEEEECCCHHHH--TTCEEEEEEEE
T ss_pred CCEEEEEEEEecCCCCC-CCCCCcCcEEEEEEECCCCccEECccCcC-CCCCcCcCeEEEeecHhhc--CCCEEEEEEEe
Confidence 57899999999999998 788999999999994 345789999875 8999999999999875322 35899999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
++ ..+|++||++.|+|.++..+.. ...||+|..
T Consensus 109 ~d~~~~~~~iG~~~i~l~~l~~~~~----~~~W~~L~~ 142 (143)
T 3f04_A 109 FDRFSKHDIIGEFKVPMNTVDFGHV----TEEWRDLQS 142 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCTTSC----EEEEEECBC
T ss_pred CCCCCCCceEEEEEEEHHHccCCCC----cceEEECcC
Confidence 99 4579999999999999865432 457888753
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.1e-19 Score=142.66 Aligned_cols=108 Identities=15% Similarity=0.313 Sum_probs=89.8
Q ss_pred ccEEEEEEEeeeCCCCCCC-CCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSS-KMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d-~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. + ..|.+||||+|.+.+. .+.+|+++++ ++||+|||+|.|.+....+ ....|.|+
T Consensus 22 ~~~L~V~v~~a~~L~~~-d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~~--~~~~L~~~ 97 (148)
T 3fdw_A 22 TQSLVVHVKECHQLAYA-DEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRD-TVNPLYDETLRYEIPESLL--AQRTLQFS 97 (148)
T ss_dssp TTEEEEEEEEEESCCCS-BTTTTBCCEEEEEEEETCCSGGGEEECCCCSS-CSSCEEEEEEEEECCSTTG--GGCEEEEE
T ss_pred CCEEEEEEEEecCCCCc-ccCCCCCCeEEEEEEEcCCcccCccccccCCC-CCCCcEeeEEEEEeChhHh--CceEEEEE
Confidence 57899999999999987 5 5789999999999743 3789999875 9999999999999976432 35679999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
|||++ ..+|++||++.|+|.++..+.. ...||+|...
T Consensus 98 V~d~d~~~~~~~iG~~~i~l~~l~~~~~----~~~W~~L~~~ 135 (148)
T 3fdw_A 98 VWHHGRFGRNTFLGEAEIQMDSWKLDKK----LDHCLPLHGK 135 (148)
T ss_dssp EEEECGGGCEEEEEEEEEEHHHHHHHCC----SEEEEECBCC
T ss_pred EEECCCCcCCcEEEEEEEEcccccccCC----ccceEECcCc
Confidence 99999 4578999999999999876543 3589999754
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=138.81 Aligned_cols=106 Identities=15% Similarity=0.350 Sum_probs=87.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+. +..|.+||||+|.+.+ ..+.+|+++++ ++||+|||+|.|. +....+ ....|.|+
T Consensus 19 ~~~L~V~V~~a~~L~~--~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~~v~~~~l--~~~~L~~~ 93 (134)
T 2b3r_A 19 NGTLFIMVMHIKDLVT--EDGADPNPYVKTYLLPDTHKTSKRKTKISRK-TRNPTFNEMLVYSGYSKETL--RQRELQLS 93 (134)
T ss_dssp TTEEEEEEEEEECCCC--TTSCCCCEEEEEEEESCSSSCCCEECCCCCS-CSSCEEEEEEEEESCCHHHH--TTCEEEEE
T ss_pred CCEEEEEEEEeeCCCC--CCCCCCCeEEEEEEEcCCCCCceecCCcCcC-CCCCCCccEEEECCcCHHHh--CcCEEEEE
Confidence 4789999999999996 5678999999999943 35679999875 9999999999999 764221 35799999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|||++ ..+|++||++.|+|.++..+. ....||+|..
T Consensus 94 V~d~d~~~~~~~lG~~~i~l~~l~~~~----~~~~W~~L~~ 130 (134)
T 2b3r_A 94 VLSAESLRENFFLGGITLPLKDFNLSK----ETVKWYQLTA 130 (134)
T ss_dssp EEECCSSSCCEEEEEEEEEGGGSCTTS----CEEEEEECBC
T ss_pred EEECCCCCCCcEEEEEEEEhhhccCCC----CcceeEECCC
Confidence 99999 456899999999999986543 2468999864
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=140.78 Aligned_cols=107 Identities=21% Similarity=0.388 Sum_probs=87.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+ ..+++|+++++ +.||+|||+|.|. +....+ ....|.|+
T Consensus 28 ~~~L~V~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~i~ 103 (142)
T 2chd_A 28 NSNLQCTIIRAKGLKPM-DSNGLADPYVKLHLLPGASKSNKLRTKTLRN-TRNPVWNETLQYHGITEEDM--QRKTLRIS 103 (142)
T ss_dssp GTEEEEEEEEEESCCCC-CTTSCCCEEEEEEEESCCSGGGEEECCCCCS-CSSCEEEEEEEEESCCHHHH--HHCEEEEE
T ss_pred CCEEEEEEEEecCCCCC-CCCCCCCCEEEEEEEcCCCCcceeeCCcCCC-CCCCcCcCEEEEcccCHHHc--cCCEEEEE
Confidence 57899999999999998 7889999999999975 35789999875 9999999999999 654211 13689999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|||++ ..+|++||++.|+|.++..+.. ...++.|..
T Consensus 104 V~d~d~~~~d~~iG~~~i~l~~l~~~~~----~~~~~~L~~ 140 (142)
T 2chd_A 104 VCDEDKFGHNEFIGETRFSLKKLKANQR----KNFNICLER 140 (142)
T ss_dssp EEEECTTSCEEEEEEEEEEGGGCCTTCC----EEEEEECBC
T ss_pred EEECCCCCCCcEEEEEEEEHHHcCCCCc----cEEEEeccc
Confidence 99999 4568999999999999875542 455666644
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-18 Score=136.89 Aligned_cols=104 Identities=13% Similarity=0.288 Sum_probs=83.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEe-cCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKV-TPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v-~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+ ....+ ....|.|+
T Consensus 17 ~~~L~v~v~~a~~L~~~-d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~--~~~~l~~~ 92 (129)
T 2bwq_A 17 GHQLIVTILGAKDLPSR-EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEIT 92 (129)
T ss_dssp TTEEEEEEEEEESCCCC-TTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGG--GGCEEEEE
T ss_pred CCEEEEEEEEeeCCCCC-CCCCCCCCEEEEEEecCCCCCcceecccccC-CCCCccccEEEEccCCHHHh--cCCeEEEE
Confidence 47899999999999998 7889999999999942 45789999875 99999999999995 32111 35799999
Q ss_pred EEecCCC-C--CceeEEEEEeCccccccCCCCCCeeEEEEe
Q 047341 78 IYASGYL-R--DYLIGTVRFLVSNISLSVATKTPSFTAFQI 115 (254)
Q Consensus 78 V~D~d~~-~--D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L 115 (254)
|||++.. + |++||++.|+|.++.... ...||+|
T Consensus 93 V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-----~~~W~~L 128 (129)
T 2bwq_A 93 LWDQARVREEESEFLGEILIELETALLDD-----EPHWYKL 128 (129)
T ss_dssp EEEC-------CEEEEEEEEEGGGCCCSS-----CEEEEEC
T ss_pred EEECCcCcCcCCceeEEEEEEccccCCCc-----CCccEEC
Confidence 9999944 3 899999999999986543 3578876
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-19 Score=143.83 Aligned_cols=108 Identities=17% Similarity=0.237 Sum_probs=88.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-------------CeEEeEeecCCCCCCeeceEEEEE-ecCCCcc
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-------------TKLCTRVDRAGAESPIWNEKFLFK-VTPEFLS 68 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-------------~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~ 68 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|+++++ ++||+|||+|.|. +..+.+
T Consensus 17 ~~~L~V~v~~a~~L~~~-d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~v~~~~l- 93 (142)
T 1rh8_A 17 LGNLIIHILQARNLVPR-DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQL- 93 (142)
T ss_dssp TTEEEEEEEEEESCCCC-SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHH-
T ss_pred CCEEEEEEEEecCCCCC-CCCCCCCceEEEEEecCCCcccccccccccceeeccccCC-CCCCCCCCEEEECCcCHHHc-
Confidence 46899999999999998 88899999999999864 2468888875 9999999999997 653211
Q ss_pred CCCcEEEEEEEecCC-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 69 SETSAISVEIYASGY-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 69 ~~~~~L~veV~D~d~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
....|.|+|||++. .+|++||++.|+|.++..... ...||+|...
T Consensus 94 -~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~----~~~W~~L~~~ 139 (142)
T 1rh8_A 94 -MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN----TPRWYPLKEQ 139 (142)
T ss_dssp -TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT----CCEEEECBCC
T ss_pred -cCCEEEEEEEECCCCCCCceEEEEEEeccccccCCC----CCeEEECCcc
Confidence 36799999999994 568999999999999865432 3579998753
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.5e-19 Score=141.24 Aligned_cols=112 Identities=17% Similarity=0.258 Sum_probs=88.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--c--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--S--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..| +||||+|.+.+ . .+++|+++++ ++||+|||+|.|.+....+ ....|.|+|
T Consensus 23 ~~~L~v~v~~a~~L~~~-d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~V 97 (142)
T 2dmg_A 23 RNKLIVVVHACRNLIAF-SEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK-TLNPVFDQSFDFSVSLPEV--QRRTLDVAV 97 (142)
T ss_dssp TTEEEEEEEEEECCCCS-STTC-CCEEEEEEEESCCCSSSCEECCCCCS-CSSCEEEEEEEECCCHHHH--HHCEEEEEE
T ss_pred CCEEEEEEEEeECCCCC-CCCC-CCeeEEEEEEcCCCCCCcccCCccCC-CCCCCcCceEEEEecHHHh--CcCEEEEEE
Confidence 57899999999999998 7888 99999999953 2 5679999875 9999999999999864221 246999999
Q ss_pred EecCCC-C--CceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcc
Q 047341 79 YASGYL-R--DYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQ 123 (254)
Q Consensus 79 ~D~d~~-~--D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~ 123 (254)
||++.. . |++||++.|+|.++..... ...||+|...++...
T Consensus 98 ~d~d~~~~~~~~~iG~~~i~l~~~~~~~~----~~~W~~L~~~~~~~~ 141 (142)
T 2dmg_A 98 KNSGGFLSKDKGLLGKVLVALASEELAKG----WTQWYDLTEDSGPSS 141 (142)
T ss_dssp EECCCSSCCSCCCCEEEEEECCCSTTTTC----BCCBCCCBCSCSCCC
T ss_pred EECCCccccCCcEEEEEEEeccccccccc----ccceeeccCCCCCCC
Confidence 999943 2 5799999999999865432 346888876544433
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=141.90 Aligned_cols=116 Identities=18% Similarity=0.204 Sum_probs=90.9
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|.|+|++|++|+.. + .|.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+.... ....|.|+
T Consensus 25 ~~~~L~V~v~~a~~L~~~-d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~---~~~~L~i~ 98 (153)
T 3fbk_A 25 QDRVLLLHIIEGKGLISK-Q-PGTCDPYVKISLIPEDSRLRHQKTQTVPD-CRDPAFHEHFFFPVQEED---DQKRLLVT 98 (153)
T ss_dssp SSSEEEEEEEEEESCCCC-S-SSCCCEEEEEEEESCSCCTTCEECCCCTT-CSSCEEEEEEEEECCGGG---TTSEEEEE
T ss_pred CCCEEEEEEEEeeCCCCC-C-CCCCCEEEEEEEEcCCCCccEEeccccCC-CCCCccccEEEEecccHH---hCCEEEEE
Confidence 357899999999999998 6 69999999999953 25689999875 999999999999996432 24569999
Q ss_pred EEecCC-CC-CceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEE
Q 047341 78 IYASGY-LR-DYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVL 126 (254)
Q Consensus 78 V~D~d~-~~-D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I 126 (254)
|||++. .+ |++||++.|+|.++.... .....||+|........+.+
T Consensus 99 V~d~d~~~~~d~~lG~~~i~l~~l~~~~---~~~~~W~~L~~~~~g~~~~l 146 (153)
T 3fbk_A 99 VWNRASQSRQSGLIGCMSFGVKSLLTPD---KEISGWYYLLGEHLGRTKHL 146 (153)
T ss_dssp EEECCSSGGGCEEEEEEEEEHHHHTC-----CCEEEEEECBCTTGGGTCCC
T ss_pred EEeCCCCCCCCcEEEEEEEEHHHhcCCC---CccccEEECCChhhcccccc
Confidence 999994 45 899999999999986422 23468999976543333333
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-18 Score=137.68 Aligned_cols=105 Identities=13% Similarity=0.206 Sum_probs=85.7
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC---cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS---STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~---~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.+.|+|+|++|++ . +..|.+||||+|.+.+ ..+.+|+++++ ++||+|||+|.|.+....+ ....|.|+||
T Consensus 25 ~~~L~V~v~~a~~---~-d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~-tlnP~wnE~f~f~v~~~~l--~~~~L~~~V~ 97 (138)
T 1wfm_A 25 KAELFVTRLEAVT---S-NHDGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEEL--PTATLTLTLR 97 (138)
T ss_dssp TTEEEEEEEEEEC---C-CCSSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSS--TTCEEEEEEE
T ss_pred CCEEEEEEEEEEc---C-CCCCCcceEEEEEEEcCCCcccEecccCcC-CCCCcCCceEEEEecHHHc--CCCEEEEEEE
Confidence 5789999999993 4 6789999999999953 23579999875 9999999999999976432 4679999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
|++ ..+|++||++.|+|.++.... ....||.|..+
T Consensus 98 d~d~~~~dd~lG~~~i~l~~l~~~~----~~~~W~~L~~~ 133 (138)
T 1wfm_A 98 TCDRFSRHSVAGELRLGLDGTSVPL----GAAQWGELKTS 133 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCT----TCCEEEECCCC
T ss_pred ECCCCCCCcEEEEEEEEcccccCcc----cccceeeCcCC
Confidence 999 567999999999999985432 23578998754
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=142.73 Aligned_cols=105 Identities=20% Similarity=0.387 Sum_probs=87.7
Q ss_pred ccEEEEEEEeeeCCCCCCCC-CCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSK-MRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~-~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
.+.|+|+|++|++|+.. +. .|.+||||+|.+.+. .+++|+++++ ++||+|||+|.|.+.. ....|.|+
T Consensus 29 ~~~L~V~v~~a~~L~~~-d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~-----~~~~L~~~ 101 (171)
T 2q3x_A 29 KGQLEVEVIRARSLTQK-PGSKSTPAPYVKVYLLENGACIAKKKTRIARK-TLDPLYQQSLVFDESP-----QGKVLQVI 101 (171)
T ss_dssp TTEEEEEEEEEESCCCC-C---CCCEEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEECSSCC-----TTEEEEEE
T ss_pred CCEEEEEEEEeeCCCCC-CcCCCCCCceEEEEEECCCccccceeCccCCC-CCCCCCCcEEEEEecC-----CCCEEEEE
Confidence 47899999999999998 65 699999999999753 3679999875 8999999999999865 47899999
Q ss_pred EE-ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 78 IY-ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 78 V~-D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
|| |++ ..+|++||++.|+|.++..+. ....||+|...
T Consensus 102 V~~d~d~~~~d~~iG~~~i~l~~l~~~~----~~~~W~~L~~~ 140 (171)
T 2q3x_A 102 VWGDYGRMDHKCFMGVAQILLEELDLSS----MVIGWYKLFPP 140 (171)
T ss_dssp EEEECSTTCSSEEEEEEEECGGGSCTTS----CEEEEEECBCG
T ss_pred EEEcCCCCCCCCEEEEEEEEHHHcccCC----CcceeEECCCc
Confidence 99 998 456899999999999987543 24689999754
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=136.54 Aligned_cols=94 Identities=22% Similarity=0.338 Sum_probs=80.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|+++++ +.||+|||+|.|.+....+ ....|.|+|
T Consensus 15 ~~~L~v~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~-t~nP~wne~f~f~v~~~~l--~~~~l~~~V 90 (138)
T 3n5a_A 15 ANSIIVNIIKARNLKAM-DIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR-NLNPIFNESFAFDIPTEKL--RETTIIITV 90 (138)
T ss_dssp TTEEEEEEEEEESCCCC-BTTTBCCEEEEEEEEETTEEEEEEECCCCSS-CSSCEEEEEEEEECCGGGG--GGEEEEEEE
T ss_pred CCeEEEEEEEeeCCCCc-CCCCCcCeEEEEEEEeCCCccceEeCccccC-CCCCcCcceEEEECChhhc--CceEEEEEE
Confidence 57899999999999998 78899999999999753 4678988875 8999999999999976422 347899999
Q ss_pred EecC-CCCCceeEEEEEeCcccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~ 100 (254)
||++ ..+|++||++.|+|.++.
T Consensus 91 ~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 91 MDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp EECCSSSCCEEEEEEEESSSSCH
T ss_pred EECCCCCCCcEEEEEEEccccCC
Confidence 9999 457999999999998754
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.8e-18 Score=140.05 Aligned_cols=94 Identities=15% Similarity=0.277 Sum_probs=81.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+ ..+.+|+++++ ++||+|||+|.|.+....+ ....|.|+|
T Consensus 36 ~~~L~V~v~~a~~L~~~-d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~V 111 (166)
T 2cm5_A 36 QGGLIVGIIRCVHLAAM-DANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDL--AKKSLDISV 111 (166)
T ss_dssp TTEEEEEEEEEESCCCC-STTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGG--GGCEEEEEE
T ss_pred CCEEEEEEEEeECCCCc-cCCCCCCcEEEEEEECCCCccceEeCCcccC-CCCCcccceEEEEcchHhc--CCCEEEEEE
Confidence 57899999999999998 7889999999999976 25789999875 9999999999999975322 357999999
Q ss_pred EecC-CCCCceeEEEEEeCcccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~ 100 (254)
||++ ..+|++||++.|+|.++.
T Consensus 112 ~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 112 WDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp EECCSSSCCEEEEEEEEETTCCH
T ss_pred EECCCCCCCcEEEeEEEecccCC
Confidence 9999 457899999999998853
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=135.70 Aligned_cols=120 Identities=16% Similarity=0.227 Sum_probs=101.1
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
-.|+|+|.+|.+|+. +.||||+|.+.+. +++|+++++++.||+|||.|.|++.... +....|.|+|+|++
T Consensus 21 msL~V~l~~a~~Lpg------~~Dp~akv~FRg~-k~kTkvi~~~~~npvfnE~F~wpl~~~l--d~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 21 MALIVHLKTVSELRG------RADRIAKVTFRGQ-SFYSRVLENCEDVADFDETFRWPVASSI--DRNEVLEIQIFNYSK 91 (144)
T ss_dssp EEEEEEEEEEESCCS------CEEEEEEEEETTE-EEECCCEEEECSCEEEEEEEEEEESSCC--CTTCEEEEEEEEECT
T ss_pred EEEEEEEEEecCCCC------CCCCeEEEEEecc-ceeeEEeccCCCCceEcceEEecCCCCC--CCCCEEEEEEEECcc
Confidence 359999999999994 4899999999654 6799999745899999999999998743 57899999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc-ceEEEEEEEEEeCC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF-QGVLSIGSMLIDGS 136 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~-~G~I~lsl~f~p~~ 136 (254)
+.++++||++.|+|.++...+. ....-+|.+.++++ .++|.+.|+|.|+.
T Consensus 92 v~~nrlIG~~~i~Lq~lv~~~~----l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~ 142 (144)
T 3l9b_A 92 VFSNKLIGTFRMVLQKVVEENR----VEVSDTLIDDNNAIIKTSLSMEVRYQAAD 142 (144)
T ss_dssp TSCCEEEEEEEEESHHHHHHSE----EEEEEEEECTTSCEEEEEEEEEEEEEETT
T ss_pred ccCCCEEEEEEEEhHHhccCCe----EEEeecccCCCCCccccEEEEEEEecCCC
Confidence 6789999999999999987763 23556777776655 58999999999874
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=6.1e-18 Score=138.34 Aligned_cols=110 Identities=17% Similarity=0.227 Sum_probs=88.0
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|+|+|++|++|+.. +..|.+||||+|.+.+. .+.+|+++++ ++||+|||+|.|.+....+ ....|.|+
T Consensus 23 ~~~~L~V~v~~a~~L~~~-d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~l~i~ 98 (159)
T 1tjx_A 23 TAGKLTVVILEAKNLKKM-DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQI--QKVQVVVT 98 (159)
T ss_dssp TTTEEEEEEEEEESCCCC-STTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCGGGG--GGCEEEEE
T ss_pred CCCEEEEEEEEeeCCCCc-cCCCCCCeEEEEEEEeCCceeceeeCceecC-CCCCcccceEEEEcCHHHh--CCcEEEEE
Confidence 357899999999999998 78899999999999642 4679998875 9999999999999975322 25689999
Q ss_pred EEecC-CCCCceeEEEEEeCccc----------cccCCCCCCeeEEEEeeC
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNI----------SLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l----------~~~~~~~~~~~~~~~L~~ 117 (254)
|||++ ..+|++||++.|++..+ .... +.....||+|..
T Consensus 99 V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~--~~~~~~W~~L~~ 147 (159)
T 1tjx_A 99 VLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANP--RRPIAQWHTLQV 147 (159)
T ss_dssp EEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHST--TCCEEEEEECBC
T ss_pred EEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCC--CCeeeeEEECcC
Confidence 99999 45799999999999854 2211 233467888864
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=135.29 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=74.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--c--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--S--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|+.. +..|.+||||+|.+.+ . .+++|+++++ ++||+|||+|.|.+....+ ....|.|+|
T Consensus 29 ~~~L~v~v~~a~~L~~~-d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~l~v~V 104 (153)
T 1w15_A 29 TNTLTVVVLKARHLPKS-DVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESL--EEISVEFLV 104 (153)
T ss_dssp TTEEEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSS--TTEEEEEEE
T ss_pred CCEEEEEEEEeECCCCc-CCCCCCCeEEEEEEEeCCeEeceEecCcccC-CCCCeecceEEEECCHHHh--CceEEEEEE
Confidence 57899999999999998 7889999999999943 2 2569999876 9999999999999976432 357899999
Q ss_pred EecC-CCCCceeEEEEEeCcc
Q 047341 79 YASG-YLRDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~ 98 (254)
||++ ..+|++||++.|+|.+
T Consensus 105 ~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 105 LDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp EECCTTSCCEEEEEEEESTTC
T ss_pred EeCCCCCCCcEEEEEEECCCC
Confidence 9999 4579999999999988
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=138.79 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=85.2
Q ss_pred ccEEEEEEEeeeCCCCCCCC------CCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEE
Q 047341 3 TQILEIILISAQGLKSPSSK------MRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAI 74 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~------~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L 74 (254)
.+.|+|+|++|++|+...+. .|.+||||+|.+.+ ..+.+|+++++ ++||+|||+|.|.+....+ ....|
T Consensus 25 ~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L 101 (147)
T 2enp_A 25 HNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK-TQKPVFEERYTFEIPFLEA--QRRTL 101 (147)
T ss_dssp TTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCS-CSSCCCCBCCEECCCHHHH--HHSEE
T ss_pred CCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccC-CCCCeEeeeEEEEeChHHh--ccCEE
Confidence 57899999999999973122 35899999999974 35779999875 9999999999999875211 24689
Q ss_pred EEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 75 SVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 75 ~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
.|+|||++ ..+|++||++.|+|.++..... ...||.|..
T Consensus 102 ~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~----~~~w~~L~~ 141 (147)
T 2enp_A 102 LLTVVDFDKFSRHCVIGKVSVPLCEVDLVKG----GHWWKALIP 141 (147)
T ss_dssp EEEEECCSTTCCSCCCEEEEEETTTSCTTTC----CCEEECCBC
T ss_pred EEEEEECCCCcCCcEEEEEEEechhcCCCCC----ccEEEEeec
Confidence 99999999 5578999999999999865432 246777764
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-17 Score=148.83 Aligned_cols=129 Identities=19% Similarity=0.241 Sum_probs=100.4
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEEC--CcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWID--SSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~--~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
..+.|+|+|++|++|+.. +..|.+||||+|.+. +..+++|+++++ ++||+|||+|.|.+..+.+ ....|.|+||
T Consensus 18 ~~~~L~v~v~~a~~L~~~-d~~g~~dPyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~~~V~ 93 (296)
T 1dqv_A 18 GSDQLVVRILQALDLPAK-DSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAEL--AQRKLHFSVY 93 (296)
T ss_dssp SSCEEEEEEEEEECCCCC-STTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGG--SSCCCEEEEE
T ss_pred CCCEEEEEEEEeECCCCc-CCCCCcCeEEEEEEEcCCCeeEeCCccCC-CCCCcEeeEEEEEecHHHh--cCCEEEEEEE
Confidence 357899999999999998 888999999999994 346789999875 8999999999999975322 3568999999
Q ss_pred ecC-CCCCceeEEEEEe-CccccccCCCCCCeeEEEEeeCC--CCCcceEEEEEEEEEeCCC
Q 047341 80 ASG-YLRDYLIGTVRFL-VSNISLSVATKTPSFTAFQIRRP--SGRFQGVLSIGSMLIDGSD 137 (254)
Q Consensus 80 D~d-~~~D~~LG~~~Ip-L~~l~~~~~~~~~~~~~~~L~~~--~g~~~G~I~lsl~f~p~~~ 137 (254)
|++ +.+|++||++.|+ +.++..... ....|+.|... .....|+|.+++.|.+...
T Consensus 94 d~d~~~~~~~iG~~~i~~l~~~~~~~~---~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~ 152 (296)
T 1dqv_A 94 DFDRFSRHDLIGQVVLDNLLELAEQPP---DRPLWRDILEGGSEKADLGELNFSLCYLPTAG 152 (296)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSCS---SCCCCEECBCCSSCCSCCCEEEEEEEEETTTT
T ss_pred EcCCCCCCceEEEEEeccccccccCCc---cceeeeccccccccccccceEEEEEEeccccc
Confidence 999 5579999999996 444433221 12356777543 2346799999999988654
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.71 E-value=4.8e-17 Score=155.17 Aligned_cols=121 Identities=17% Similarity=0.225 Sum_probs=99.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.+.|+|+|++|++|++. +..|.+||||+|.+++. +++|+++++ ++||+|||+|.|.+... ....|.|+|||++
T Consensus 386 ~~~l~v~v~~a~~L~~~-d~~~~sdpyv~v~~~~~-~~~T~~~~~-t~nP~w~e~f~f~~~~~----~~~~l~~~v~d~d 458 (510)
T 3jzy_A 386 IGRLMVHVIEATELKAC-KPNGKSNPYCEISMGSQ-SYTTRTIQD-TLNPKWNFNCQFFIKDL----YQDVLCLTLFDRD 458 (510)
T ss_dssp CEEEEEEEEEEESCCCC-STTSCCCEEEEEEETTE-EEECCCCSS-CSSCEEEEEEEEEESCT----TTCEEEEEEEECC
T ss_pred CceEEEEeceeecCCCC-CCCCCCCeEEEEEECCe-eccCCccCC-CCCCccCceEEEEecCC----CCCEEEEEEEeCC
Confidence 46899999999999998 88999999999999754 679999876 89999999999999752 4678999999999
Q ss_pred -CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 83 -YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 83 -~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
..+|++||++.++|.++..+.....+...|+++. +...|+|++.+.+.
T Consensus 459 ~~~~~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~---~~~~G~i~l~~~l~ 507 (510)
T 3jzy_A 459 QFSPDDFLGRTEIPVAKIRTEQESKGPMTRRLLLH---EVPTGEVWVRFDLQ 507 (510)
T ss_dssp SSSSCCEEEEEEEEHHHHHHHHHHHCSCCEEEECB---SSSSCEEEEEEEEE
T ss_pred CCCCCCceEEEEEEHHHhccccCCCCceeeeecCC---CCCCceEEEEEEEE
Confidence 4579999999999999876543112234677764 44689998888764
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-16 Score=155.70 Aligned_cols=119 Identities=17% Similarity=0.210 Sum_probs=100.2
Q ss_pred ccEEEEEEEeeeCCCCCCC--CCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 3 TQILEIILISAQGLKSPSS--KMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d--~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
.+.|+|+|++|++|+.. + ..+.+||||+|.+.+. .+.||++++++|.||+|||+|.|.+... +...|.|
T Consensus 496 ~~~L~V~Vi~A~~L~~~-d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~----el~~L~~ 570 (624)
T 1djx_A 496 PERLRVRIISGQQLPKV-NKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP----DLALVRF 570 (624)
T ss_dssp CEEEEEEEEEEESCCCC-SSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG----GGCEEEE
T ss_pred ceEEEEEEEEcCCCCcc-cccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC----CCCEEEE
Confidence 46899999999999987 5 3689999999999652 5779999987669999999999999753 2478999
Q ss_pred EEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEEE
Q 047341 77 EIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSMLI 133 (254)
Q Consensus 77 eV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f~ 133 (254)
+|||++ ..+|++||++.|||..|..+ .++++|.+..|.+ .+.|.+.+.|.
T Consensus 571 ~V~D~D~~~~dd~iG~~~ipl~~L~~G-------~r~v~L~d~~g~~~~~~~L~v~i~~~ 623 (624)
T 1djx_A 571 MVEDYDSSSKNDFIGQSTIPWNSLKQG-------YRHVHLLSKNGDQHPSATLFVKISIQ 623 (624)
T ss_dssp EEEECCSSSCCEEEEEEEEEGGGBCCE-------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEEEcCCCCCCceeEEEEEEHHHcCCC-------cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence 999999 55799999999999998654 4689998877764 57899988875
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=148.47 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=104.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
.+.|+|+|++|++|+. |.+|++||||+|.+++. +.||+|+++ ++||+|||+|.|.+... .....|.|+|||+|
T Consensus 393 ~~~L~V~V~~A~~L~~--D~~g~sDPYV~v~l~~~-~~kTkvik~-tlNP~Wne~f~f~~~~~---~~~~~L~~~V~D~D 465 (540)
T 3nsj_A 393 LAHLVVSNFRAEHLWG--DYTTATDAYLKVFFGGQ-EFRTGVVWN-NNNPRWTDKMDFENVLL---STGGPLRVQVWDAD 465 (540)
T ss_dssp EEEEEEEEEEEESCCC--SSCSCCCEEEEEEETTE-EEECCCBCS-CSSCBCCCCEEEEEEET---TTCCCEEEEEEECC
T ss_pred ccEEEEEEEEccCCCc--ccCCCcCeEEEEEECCE-eeeeeeecC-CCCCCCCeEEEEEEecC---CCCCEEEEEEEECC
Confidence 5789999999999987 78899999999999865 689999986 89999999999986421 14788999999999
Q ss_pred C-CCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCCCCCCccccccccccccccchhHHHh
Q 047341 83 Y-LRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGSDLPAFDEVSAIGYRDLMGESKRKES 161 (254)
Q Consensus 83 ~-~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~~~p~l~~~~~~~~~dl~~~~~~~~~ 161 (254)
. ..|++||++.++|.. +. ...+++| .+|+|+|++.+.-. |.|.+..=.+|.-
T Consensus 466 ~~~~dD~LG~~~~~L~~---g~-----~~~~~~l------~~G~l~~~~~~~c~---p~l~g~~c~~y~~---------- 518 (540)
T 3nsj_A 466 YGWDDDLLGSCDRSPHS---GF-----HEVTCEL------NHGRVKFSYHAKCL---PHLTGGTCLEYAP---------- 518 (540)
T ss_dssp SSSCCEEEEEEEECCCS---EE-----EEEEEEC------SSSEEEEEEEEEEC---TTEESTTSCEECC----------
T ss_pred CCCCCCEEEEEEEEeeC---Cc-----EEEEEEc------CCeEEEEEEEEEEC---CCCCCChhhhcCC----------
Confidence 4 568999999999872 11 2345554 26899999887654 6666543333332
Q ss_pred hhhhccccccccccCCCcccccc
Q 047341 162 LMTRKSKSMADEFDAGDDESWEN 184 (254)
Q Consensus 162 ~~~~k~~~~~~~f~~~~~~~~~~ 184 (254)
...+...|+.+..+++.|
T Consensus 519 -----~~~~~~~~~~~~~~~~~~ 536 (540)
T 3nsj_A 519 -----QGLLGDPPGNRSGAVWHH 536 (540)
T ss_dssp -----CCBSSCCCCSSCC-----
T ss_pred -----ccccCCCCCCCccccccc
Confidence 234556677777777766
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.62 E-value=3.4e-15 Score=132.12 Aligned_cols=111 Identities=17% Similarity=0.236 Sum_probs=87.0
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--c--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--S--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|++|+.. +..|.+||||+|.+.+ . .+.+|+++++ ++||+|||+|.|.+..+.+ ....|.|+|
T Consensus 149 ~~~l~v~v~~a~~L~~~-d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~l~i~V 224 (284)
T 2r83_A 149 AGKLTVVILEAKNLKKM-DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN-TLNPYYNESFSFEVPFEQI--QKVQVVVTV 224 (284)
T ss_dssp TTEEEEEEEEEESCCCC-STTSCCCEEEEEEEEETTEEEEEEECCCCCS-CSSCEEEEEEEEECCTTTG--GGEEEEEEE
T ss_pred CCceEEEEEEeECCCCc-CCCCCcCeEEEEEEEeCCcEeeeeccceecC-CCCCEEceeEEEeCCHHHh--CceEEEEEE
Confidence 46899999999999998 7889999999999953 2 4578988875 8999999999999976432 246899999
Q ss_pred EecC-CCCCceeEEEEEeCccccccC--------CCCCCeeEEEEeeC
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSV--------ATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~--------~~~~~~~~~~~L~~ 117 (254)
||++ ..+|++||++.|++..+..+. ..+.....||+|..
T Consensus 225 ~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~ 272 (284)
T 2r83_A 225 LDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 272 (284)
T ss_dssp EECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred EeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence 9999 557999999999997643210 01223457888864
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-16 Score=152.81 Aligned_cols=121 Identities=18% Similarity=0.279 Sum_probs=21.1
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCC---CCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGA---ESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt---~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.+.|+|+|++|++|++. + ||||++.+++..+.||++.++ + +||+|||+|.|.+.+ ....|.|+||
T Consensus 10 ~~~L~V~VieAk~L~~~-d-----dpYv~v~l~~~~~~kT~v~~k-t~~glnP~WnE~F~f~~~~-----~~~~L~v~V~ 77 (483)
T 3bxj_A 10 DNVLKLWIIEARELPPK-K-----RYYCELCLDDMLYARTTSKPR-SASGDTVFWGEHFEFNNLP-----AVRALRLHLY 77 (483)
T ss_dssp EECC----------------------------------------------------CCEECC------------------
T ss_pred ccEEEEEEEEcCCcCCC-C-----CCeEEEEECCeEEeeeeEEeC-CCCCCCCccccEEEEecCC-----CccEEEEEEE
Confidence 46799999999999987 4 999999998776779998875 6 999999999999754 2578999999
Q ss_pred ec-C----CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC------------------------CcceEEEEEE
Q 047341 80 AS-G----YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG------------------------RFQGVLSIGS 130 (254)
Q Consensus 80 D~-d----~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g------------------------~~~G~I~lsl 130 (254)
|. + ..+|++||.+.|++.++..+.. ...||+|..+++ ...|.|++.+
T Consensus 78 d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~----~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v 153 (483)
T 3bxj_A 78 RDSDKKRKKDKAGYVGLVTVPVATLAGRHF----TEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKA 153 (483)
T ss_dssp -----------------------------C----CEECC--------------------------------------CEE
T ss_pred ecCCccccCCCCceEEEEEEEHHHhcCCCC----CCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEE
Confidence 94 4 4579999999999999876542 356788853321 2469999999
Q ss_pred EEEeCCCCC
Q 047341 131 MLIDGSDLP 139 (254)
Q Consensus 131 ~f~p~~~~p 139 (254)
+|.+....|
T Consensus 154 ~~~~~~vlP 162 (483)
T 3bxj_A 154 RYQTMSILP 162 (483)
T ss_dssp EEEECCBCC
T ss_pred Eeeeeeecc
Confidence 999875433
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-15 Score=147.57 Aligned_cols=105 Identities=19% Similarity=0.415 Sum_probs=89.0
Q ss_pred cccEEEEEEEeeeCCCC---CCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKS---PSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~---~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~v 76 (254)
..+.|+|+|++|++|+. . +..|++||||+|.+.+ ..+.||+++++ ++||+|||+|.|.+... ....|.|
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~-D~~g~sDPYV~V~l~~~~~~k~kTkvik~-tlNPvWNEtF~F~v~~~----~~~~L~~ 89 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFG-DMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN----QENVLEI 89 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHH-HHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT----SCCBCEE
T ss_pred CccEEEEEEEEEECCCCcccc-CCCCCcCeEEEEEEecCCCCeEecceEcC-CCCCeeeeEEEEEecCC----CCCEEEE
Confidence 35789999999999998 6 6778999999999985 35789999975 89999999999999863 4678999
Q ss_pred EEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 77 EIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 77 eV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
+|||++..+|++||++.|+|.++..+.. ...|++|.
T Consensus 90 ~V~D~D~~~ddfIG~v~I~L~~L~~g~~----~~~w~~L~ 125 (749)
T 1cjy_A 90 TLMDANYVMDETLGTATFTVSSMKVGEK----KEVPFIFN 125 (749)
T ss_dssp EEEECCSSSCEEEEEECCBSTTSCTTCC----CCEEEEET
T ss_pred EEEECCCCCCceeEEEEEEHHHcCCCCc----eEEEEecC
Confidence 9999994449999999999999865442 35788884
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.7e-14 Score=143.04 Aligned_cols=113 Identities=22% Similarity=0.293 Sum_probs=94.1
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-----CeEEeEeecCCCCCCeece-EEEEE-ecCCCccCCCcEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-----TKLCTRVDRAGAESPIWNE-KFLFK-VTPEFLSSETSAISV 76 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-----~k~rTkv~k~gt~NP~WNE-~f~F~-v~~~~l~~~~~~L~v 76 (254)
..|.|+|++|++|+.. .+||||+|.+.+. .+++|+++++++.||+||| +|.|. |... +...|.|
T Consensus 725 ~~L~V~Visaq~L~~~-----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p----ela~Lrf 795 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR-----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP----TLASLRI 795 (885)
T ss_dssp EEEEEEEEEEESCCSS-----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG----GGCEEEE
T ss_pred eEEEEEEEEeccCccc-----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC----CcCEEEE
Confidence 4799999999999863 4899999999651 3579999987789999999 69998 6532 3468999
Q ss_pred EEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEEEeC
Q 047341 77 EIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSMLIDG 135 (254)
Q Consensus 77 eV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f~p~ 135 (254)
+|||++ |++||++.|||..|..+ .++++|++..|.. .|+|.+.+.+.+-
T Consensus 796 ~V~D~d---ddfiG~~~lpL~~L~~G-------yR~vpL~~~~g~~l~~atLfv~i~~~~~ 846 (885)
T 3ohm_B 796 AAFEEG---GKFVGHRILPVSAIRSG-------YHYVCLRNEANQPLCLPALLIYTEASDY 846 (885)
T ss_dssp EEEETT---TEEEEEEEEETTTCCCE-------EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred EEEcCC---ccEEeeEEEEHHHcCCC-------ceEEEecCCCCCccCceEEEEEEEEEec
Confidence 999987 89999999999998654 4678999887764 7899999999864
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.53 E-value=4.5e-15 Score=132.99 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=80.2
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|++|++. +..|.+||||+|.+.+ ..+.+|+++++ +.||+|||.|.|.+..+.+ ....|.|+|
T Consensus 151 ~~~l~v~v~~a~~L~~~-d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~l--~~~~L~i~V 226 (296)
T 1dqv_A 151 AGLLTVTIIKASNLKAM-DLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESV--ENVGLSIAV 226 (296)
T ss_dssp TTEEEEEEEEEESCCCC-SSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGG--GSCCCCCEE
T ss_pred cceeEEEEEEeecCCcc-CCCCCCCcEEEEEEEeCCcCccceecceecC-CCCCeECceEEEEcCHHHc--cCcEEEEEE
Confidence 47899999999999998 8889999999999963 25679998875 9999999999999976422 356899999
Q ss_pred EecC-CCCCceeEEEEEeCcccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~ 100 (254)
||++ ..+|++||.+.|++..+.
T Consensus 227 ~d~d~~~~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 227 VDYDCIGHNEVIGVCRVGPEAAD 249 (296)
T ss_dssp EECCSSSCCEEEEECCCSSCTTC
T ss_pred EeCCCCCCCceEEEEEECCccCC
Confidence 9999 557999999999998764
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=138.81 Aligned_cols=114 Identities=22% Similarity=0.291 Sum_probs=94.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc------CeEEeEeecCCCCCCeeceE-EEEE-ecCCCccCCCcEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS------TKLCTRVDRAGAESPIWNEK-FLFK-VTPEFLSSETSAI 74 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~------~k~rTkv~k~gt~NP~WNE~-f~F~-v~~~~l~~~~~~L 74 (254)
.+.|.|+|++|++|+.. .+||||+|.+.+. .+++|++++++|.||+|||+ |.|. |... +...|
T Consensus 649 ~~~L~V~Visaq~L~~~-----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~p----ela~L 719 (816)
T 3qr0_A 649 AGTIEIKIISAQFLSDK-----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLP----DLAVV 719 (816)
T ss_dssp CEEEEEEEEEEECCCSS-----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCG----GGCEE
T ss_pred ceEEEEEEEEcccCCCC-----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCC----CccEE
Confidence 36799999999999864 4899999999752 46799999877899999998 9998 7542 34689
Q ss_pred EEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEEEeC
Q 047341 75 SVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSMLIDG 135 (254)
Q Consensus 75 ~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f~p~ 135 (254)
.|+|||++ |++||++.|||..|..+ .++++|.+..|.+ .++|.+.+.+...
T Consensus 720 rf~V~D~d---ddfiG~~~ipL~~L~~G-------yR~vpL~~~~g~~~~~atLfv~i~~~~~ 772 (816)
T 3qr0_A 720 RIIVSEEN---GKFIGHRVMPLDGIKPG-------YRHVPLRNESNRPLGLASVFAHIVAKDY 772 (816)
T ss_dssp EEEEEETT---SCEEEEEEEESTTCCCE-------EEEEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred EEEEEecC---CCeeeEEEEEHHHcCCc-------ceEEEEeCCCCCCCCceEEEEEEEEEec
Confidence 99999975 88999999999998765 4678999887765 4788888888764
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=137.33 Aligned_cols=112 Identities=21% Similarity=0.318 Sum_probs=90.9
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC-----cCeEEeE-eecCCCCCCeece-EEEE-EecCCCccCCCcEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS-----STKLCTR-VDRAGAESPIWNE-KFLF-KVTPEFLSSETSAI 74 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~-----~~k~rTk-v~k~gt~NP~WNE-~f~F-~v~~~~l~~~~~~L 74 (254)
.+.|.|+|++|++|+.. .+||||+|.+.+ ..++||+ +++++|.||+||| +|.| .|... +...|
T Consensus 677 ~~~L~V~Visa~~L~~~-----~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~----el~~L 747 (799)
T 2zkm_X 677 ATTLSITVISGQFLSER-----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP----ELASL 747 (799)
T ss_dssp CEEEEEEEEEEESCCSS-----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG----GGCEE
T ss_pred eeeEEEEEEeccccCcc-----CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccC----CccEE
Confidence 46899999999999853 589999999954 1367999 8877789999999 7999 78643 34589
Q ss_pred EEEEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCC--cceEEEEEEEEE
Q 047341 75 SVEIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGR--FQGVLSIGSMLI 133 (254)
Q Consensus 75 ~veV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~--~~G~I~lsl~f~ 133 (254)
.|+|||++ |++||++.|||..|..+ .++++|.+..|. ..+.|.+.+.+.
T Consensus 748 r~~V~D~d---~d~iG~~~ipl~~L~~G-------~r~v~L~~~~g~~~~~~~Lfv~i~~~ 798 (799)
T 2zkm_X 748 RVAVMEEG---NKFLGHRIIPINALNSG-------YHHLCLHSESNMPLTMPALFIFLEMK 798 (799)
T ss_dssp EEEEEETT---TEEEEEEEEEGGGBCCE-------EEEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred EEEEEEeC---CCccceEeeehhhcCCC-------cEEEeccCCCCCCCCceEEEEEEEEE
Confidence 99999986 89999999999998654 468899887665 357788877764
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.41 E-value=5.6e-13 Score=132.19 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=88.8
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|++|.+. +..|.+||||++.+.+ ..+.+|+++++ ++||+|||+|.|.+.... ....|.|+|
T Consensus 171 ~~~L~V~v~~a~~L~~~-d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~-tlnP~wne~f~f~~~~~~---~~~~L~v~v 245 (674)
T 3pfq_A 171 REVLIVVVRDAKNLVPM-DPNGLSDPYVKLKLIPDPKSESKQKTKTIKS-SLNPEWNETFRFQLKESD---KDRRLSVEI 245 (674)
T ss_dssp SSEEEEEEEEEESCCCC-STTSSCCEEEEEEEESCSSCCSCEECCCCSS-CSSCEEEEEEEEECCSTT---TTCEEEEEE
T ss_pred cceeeeeeecccccCCC-CcccccCcccccccccCcccccccccccccc-ccCCCccceeeeecccCC---ccceeeeEE
Confidence 46799999999999999 8999999999999943 25679999876 899999999999987632 456799999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
||++ ..+|++||++.|+|.++..... ..|+.+..+
T Consensus 246 ~d~d~~~~dd~iG~~~i~l~~l~~~~~-----~~w~~Lls~ 281 (674)
T 3pfq_A 246 WDWDLTSRNDFMGSLSFGISELQKAGV-----DGWFKLLSQ 281 (674)
T ss_dssp EECCSSSCCEECCBCCCBTTHHHHCCE-----EEEEECBCT
T ss_pred eecccccccccccccccchhhhccCCc-----ccceeeccc
Confidence 9999 5679999999999999876542 467777653
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=99.00 E-value=7.5e-09 Score=82.13 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=83.5
Q ss_pred cEEEEEEEeeeC--CCCCCCCCCCCCeEEEEEECCcC---eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQG--LKSPSSKMRRMQTYALVWIDSST---KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~--L~~~~d~~G~~DPYV~V~l~~~~---k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..|||.+..+.- |... .-..||||.|.++-.. +.+|-+.+..|..|+|||.|.-.|.+ .+.|.|.|
T Consensus 6 ~flRi~~~~~~~~~~~~~---~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~------Gr~l~i~V 76 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAE---DEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE------GRVIQIVL 76 (126)
T ss_dssp CEEEEEEEEEECSSCCCS---SSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT------TCEEEEEE
T ss_pred ccEEeeeccccccccCCc---cccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC------CEEEEEEE
Confidence 568999887764 3332 1248999999996432 23654555569999999999999975 89999999
Q ss_pred EecCCCCCceeEEEEEeCccccccCCC-CCCeeEEEEeeCCCCCcceEEEEEEEEE
Q 047341 79 YASGYLRDYLIGTVRFLVSNISLSVAT-KTPSFTAFQIRRPSGRFQGVLSIGSMLI 133 (254)
Q Consensus 79 ~D~d~~~D~~LG~~~IpL~~l~~~~~~-~~~~~~~~~L~~~~g~~~G~I~lsl~f~ 133 (254)
|+... +||..++|++.+|...-.. +.....|+.|. +.|.|++.+.|+
T Consensus 77 fh~a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLe-----P~Gkl~~~i~~~ 124 (126)
T 1yrk_A 77 MRAAE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMSVQYF 124 (126)
T ss_dssp EEETT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEEEE
T ss_pred EcCCC---CeeeEEEEEHHHHHhhhccCCCceEEEEecc-----cCcEEEEEEEEe
Confidence 97654 8999999999999865110 11235677763 689999999886
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=81.02 Aligned_cols=116 Identities=11% Similarity=0.121 Sum_probs=84.2
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcC---eEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSST---KLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~---k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
..|||.+..+.-.+-+.-..-..||||.|.++-.. +.+|-+.+..|..|+|||.|.-.|.+ .+.|.|.||+
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~------Gr~l~i~Vfh 83 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK------GRVMQIIVKG 83 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS------SCEEEEEEEC
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC------CeEEEEEEEc
Confidence 46899998877533220012358999999996432 35663333348999999999999975 8999999996
Q ss_pred cCCCCCceeEEEEEeCcccccc---CCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeC
Q 047341 81 SGYLRDYLIGTVRFLVSNISLS---VATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDG 135 (254)
Q Consensus 81 ~d~~~D~~LG~~~IpL~~l~~~---~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~ 135 (254)
... +||..++|++.+|... +. .....|+.|. +.|.|++.+.|.-.
T Consensus 84 ~a~---~fVAn~tV~~edL~~~ck~~~--g~~e~WvdLe-----P~Gkl~v~i~~~~e 131 (138)
T 2enj_A 84 KNV---DLISETTVELYSLAERCRKNN--GKTEIWLELK-----PQGRMLMNARYFLE 131 (138)
T ss_dssp SSC---SCCEEEEEESHHHHHHHHHTT--TCEEEEEECB-----SSCEEEEEEEECCC
T ss_pred CCC---CeeeEEEEEHHHHHhhhccCC--CceEEEEecc-----cCcEEEEEEEEEEe
Confidence 544 8999999999999865 22 2245777764 68999999998643
|
| >2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=96.49 E-value=0.012 Score=48.09 Aligned_cols=128 Identities=13% Similarity=0.011 Sum_probs=86.2
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCcCeEEeEeecCCCCCCeeceEEEEEecCCCcc---CCCcEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI--DSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLS---SETSAISVE 77 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~---~~~~~L~ve 77 (254)
.+.++|+|.++.--+..-...+..+|+.-+.+ -.-..+.|.+.+ +.+|.+|-+-.|.|..+.+. .....|.|+
T Consensus 17 EnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~--G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~lE 94 (156)
T 2yrb_A 17 ENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLE 94 (156)
T ss_dssp CEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEE
T ss_pred CcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc--CCCCCcceEEEEEEEeCHHHHHHHhcCCEEEE
Confidence 35789999988632211011234567555555 344567888886 79999999988888653110 024579999
Q ss_pred EEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCC--CcceEEEEEEEEEeC
Q 047341 78 IYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSG--RFQGVLSIGSMLIDG 135 (254)
Q Consensus 78 V~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g--~~~G~I~lsl~f~p~ 135 (254)
++......-+.||.++|+|.+++.... ......+|....| ..-|.|.+.+++..+
T Consensus 95 Lhqa~g~~~~tla~~~I~l~~lLe~~~---~i~g~~~L~g~~g~~~~~G~LeywiRL~~P 151 (156)
T 2yrb_A 95 VHQAYSTEYETIAACQLKFHEILEKSG---RIFCTASLIGTKGDIPNFGTVEYWFRLRVS 151 (156)
T ss_dssp EEEECSSCEEEEEEEEECCSHHHHCCS---CEEEEEEECBSSSCCTTSEEEEEEEEEEEC
T ss_pred EEEeeCCCceEEEEEEEEhHHhhCcCC---ceEEEEEEEcCCCCcceEEEEEEEEEEecc
Confidence 998764445799999999999987643 1223446666666 569999999999754
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.18 E-value=2.9 Score=35.77 Aligned_cols=57 Identities=9% Similarity=0.118 Sum_probs=41.6
Q ss_pred CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecCCC--C---CceeEEEEEeCc
Q 047341 38 TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASGYL--R---DYLIGTVRFLVS 97 (254)
Q Consensus 38 ~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d~~--~---D~~LG~~~IpL~ 97 (254)
..++|.|... ..+|.|+|++.+.++.+.. +...|.|.+++.... + +..+|-+.+||-
T Consensus 77 se~~S~V~YH-nk~P~w~EtIKi~LP~~~~--~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~ 138 (220)
T 3l4c_A 77 SEYKSVIYYQ-VKQPRWFETVKVAIPIEDV--NRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM 138 (220)
T ss_dssp SCEECCCCTT-CSSCCCCEEEEEEECTTSS--TTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred eeEEEEEEEc-CCCCCceEeEEEeeChhhc--CCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence 3567767653 7899999999999988643 678999999876521 2 346777777763
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=1.3 Score=45.57 Aligned_cols=89 Identities=16% Similarity=0.270 Sum_probs=58.7
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..++|+|.++.++... ...+-||.+.+ ++. ....|+... ...+|.|||.+.|++.-..+. ....|.|.|
T Consensus 217 ~~f~i~i~~~~~~~~~----~~~~~~V~~~l~~g~~~l~~~~~T~~~~-~~~~~~Wne~l~f~i~i~dLP-r~a~L~~ti 290 (940)
T 2wxf_A 217 QPFSIELIEGRKVNAD----ERMKLVVQAGLFHGNEMLCKTVSSSEVN-VCSEPVWKQRLEFDISVCDLP-RMARLCFAL 290 (940)
T ss_dssp SEEEEEEEEEECCCC-------CEEEEEEEEEETTEESSCCEECCCEE-SCSSCEEEEEEEEEEEGGGCC-TTCEEEEEE
T ss_pred CceEEEEEEecccCCC----CCceEEEEEEEEECCEEccCceeccccc-CCCCcccceEEEcccccccCC-cccEEEEEE
Confidence 4689999999998753 23678888776 332 123443322 267899999999987653331 467899999
Q ss_pred EecCC---C----------CCceeEEEEEeCcc
Q 047341 79 YASGY---L----------RDYLIGTVRFLVSN 98 (254)
Q Consensus 79 ~D~d~---~----------~D~~LG~~~IpL~~ 98 (254)
|+... . ....||.+.++|=+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd 323 (940)
T 2wxf_A 291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFD 323 (940)
T ss_dssp EEEC----------------CEEEEEEEEESBC
T ss_pred EEecCCccCccccccccccccceEEEEeeeEEC
Confidence 98631 1 13488998888754
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=90.99 E-value=1.1 Score=46.66 Aligned_cols=91 Identities=13% Similarity=0.112 Sum_probs=59.8
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEE--CCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWI--DSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l--~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..++|+|+++.++... .....+-||.+.+ ++. ....|+.. ...+|.|||.+.|++.-..+. ....|.|.|
T Consensus 355 ~~f~v~i~~~~~~n~~--~~~~~~~~V~~~l~hG~~~L~~~~~T~~~--~~~~~~Wne~l~f~i~i~dLP-r~arL~~tl 429 (1091)
T 3hhm_A 355 SALRIKILCATYVNVN--IRDIDKIYVRTGIYHGGEPLCDNVNTQRV--PCSNPRWNEWLNYDIYIPDLP-RAARLCLSI 429 (1091)
T ss_dssp SEEEEEEEEESCCCCC--CSSCCCCCEEEEEESSSCSSCCEECCCCC--CTTSCEEEEEEEEEEEGGGCC-TTCEEEEEE
T ss_pred CCEEEEEEEecCCCCC--ccccceEEEEEEEEECCEEccCceecccc--CCCCCCCCeeEEecCccccCC-hhcEEEEEE
Confidence 5689999999988643 2234677888877 332 12234322 367889999999987554331 468999999
Q ss_pred EecCCC-----CCceeEEEEEeCccc
Q 047341 79 YASGYL-----RDYLIGTVRFLVSNI 99 (254)
Q Consensus 79 ~D~d~~-----~D~~LG~~~IpL~~l 99 (254)
|+.... ....||.+.++|=+.
T Consensus 430 ~~~~~~~~~~~~~~~lg~~n~~lfd~ 455 (1091)
T 3hhm_A 430 CSVKGRKGAKEEHCPLAWGNINLFDY 455 (1091)
T ss_dssp CCCCCCC-------CCEEEEEESBCT
T ss_pred EEecCccCcccccceeEEeeeeeEcc
Confidence 986531 235788888887553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 254 | ||||
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 2e-06 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 4e-06 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 4e-06 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 8e-05 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 7e-04 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 8e-04 |
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.9 bits (103), Expect = 2e-06
Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLC----TRVDRAGAESPIWNEKF 58
T L ++++ A+ L S Y V + + K T V + + ++NE F
Sbjct: 14 TNTLTVVVLKARHLP-KSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK-CTPNAVFNELF 71
Query: 59 LFKVTPEFLSSETSAISVEIYASGYLRDYLIGTVRF 94
+F + E L + V R+ +IG +
Sbjct: 72 VFDIPCESLEEISVEFLVLDS-ERGSRNEVIGRLVL 106
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.2 bits (101), Expect = 4e-06
Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 17/124 (13%)
Query: 4 QILEIILISAQGL-KSPSSKMRRMQTYALVWI----DSSTKLCTRVDRAGAESPIWNEKF 58
+ L + +IS Q L K +K + +V I + T V +P W+ +F
Sbjct: 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEF 63
Query: 59 LFKVTPEFLSSETSAISVEIYASGYL-RDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117
F+VT L+ + ++ IG ++ + + +
Sbjct: 64 EFEVTVPDLALVR----FMVEDYDSSSKNDFIGQS-------TIPWNSLKQGYRHVHLLS 112
Query: 118 PSGR 121
+G
Sbjct: 113 KNGD 116
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 43.3 bits (101), Expect = 4e-06
Identities = 13/97 (13%), Positives = 37/97 (38%), Gaps = 9/97 (9%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI----DSSTKLCTRVDRAGAESPIWNEKF 58
L + +I L + + + +W+ K T++ + +P +NE+F
Sbjct: 14 QGGLIVGIIRCVHLAAMDANGY-SDPFVKLWLKPDMGKKAKHKTQIKK-KTLNPEFNEEF 71
Query: 59 LFKVTPEFLSSETSAISVEIYASGYL-RDYLIGTVRF 94
+ + L+ ++ + + ++ + IG +
Sbjct: 72 FYDIKHSDLAKKS--LDISVWDYDIGKSNDYIGGCQL 106
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (91), Expect = 8e-05
Identities = 12/106 (11%), Positives = 29/106 (27%), Gaps = 8/106 (7%)
Query: 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWI---DSSTKLCTRVDRAGAESPIWNEKFL 59
L + ++ A+ L R Y ++ S P WN+ F+
Sbjct: 13 GHQLIVTILGAKDLP-SREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFI 71
Query: 60 FKVTPEFLSSETSAISVEIYASGYL---RDYLIGTVRFLVSNISLS 102
+ + + ++ + +G + + L
Sbjct: 72 YSPVHRR-EFRERMLEITLWDQARVREEESEFLGEILIELETALLD 116
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 7e-04
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 6/103 (5%)
Query: 3 TQILEIILISAQGL--KSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLF 60
++L +++ A+ L P+ L+ S + +P WNE F F
Sbjct: 14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRF 73
Query: 61 KVTPEFLSSETSAISVEIYASGYL-RDYLIGTVRFLVSNISLS 102
++ +SVEI+ R+ +G++ F +S + +
Sbjct: 74 QLKESDKDRR---LSVEIWDWDLTSRNDFMGSLSFGISELQKA 113
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 36.3 bits (83), Expect = 8e-04
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTP 64
LE++L+SA+GL+ + + M Y + + + + V +P WNE F+F V+
Sbjct: 11 TLEVVLVSAKGLE-DADFLNNMDPYVQLTCRTQDQ-KSNVAEGMGTTPEWNETFIFTVSE 68
Query: 65 EFLSSETSAISVEIYASGYLRDYLIGTVRFLVSNI 99
+ + D +G + +
Sbjct: 69 G---TTELKAKIFDK-DVGTEDDAVGEATIPLEPV 99
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 254 | |||
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.91 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.9 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.86 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.86 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.85 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.85 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.8 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.8 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.78 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.78 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.75 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.74 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.74 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.7 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.7 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.7 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.7 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.67 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.65 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.63 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.42 | |
| d2yrba1 | 142 | Fantom {Human (Homo sapiens) [TaxId: 9606]} | 93.82 |
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.91 E-value=1.9e-24 Score=171.48 Aligned_cols=124 Identities=19% Similarity=0.373 Sum_probs=105.1
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+.|+|+|+|++|++|++. +..|++||||++++++. +.+|+++++++.||+|||+|.|.+.+ ....|.|+|||+
T Consensus 8 p~G~L~V~v~~a~~L~~~-d~~g~~Dpyv~v~~~~~-~~~t~~~~~~~~nP~Wne~f~f~v~~-----~~~~L~v~V~d~ 80 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDA-DFLNNMDPYVQLTCRTQ-DQKSNVAEGMGTTPEWNETFIFTVSE-----GTTELKAKIFDK 80 (136)
T ss_dssp CEEEEEEEEEEEEECSSC-CSSCSSCCCEEEESSSC-EEECCCCTTCCSSCEEEEEEEEEEES-----SCCEEEEEECCS
T ss_pred CcEEEEEEEEEeeCCCCC-CCCCCCCccEEEEEeee-eEEEEEEecCCCcEEEeeEEEEEEcC-----ccceEEEEEEEe
Confidence 458999999999999998 88899999999999865 56888887678999999999999986 356799999999
Q ss_pred C-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCC
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGS 136 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~ 136 (254)
+ ...|++||.+.|+|.++..... ....++.+.. .++.+|+|+|++.|.|..
T Consensus 81 d~~~~d~~iG~~~i~L~~l~~~~~---~~~~~~~l~~-~~~~~G~i~l~l~~~p~~ 132 (136)
T d1wfja_ 81 DVGTEDDAVGEATIPLEPVFVEGS---IPPTAYNVVK-DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSCTTTCCSEEEEEESHHHHHHSE---EEEEEEEEEE-TTEEEEEEEEEEEEEECC
T ss_pred cCCCCCCEEEEEEEEhHHhcccCC---cCcEEEEecC-CCccCEEEEEEEEEEeCC
Confidence 8 4578999999999999865432 2356788764 567899999999999863
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.3e-23 Score=164.67 Aligned_cols=119 Identities=18% Similarity=0.297 Sum_probs=100.5
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEec
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYAS 81 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~ 81 (254)
+.|.|+|+|++|++|+.. +..|.+||||+|.+++. +++|+++++ +.||+|||.|.|.+.. ....|.|+|||+
T Consensus 4 ~~G~L~V~v~~A~~L~~~-d~~g~~Dpyv~v~~~~~-~~~T~~~~~-t~nP~wne~f~f~v~~-----~~~~L~i~V~d~ 75 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAA-DFSGKSDPFCLLELGND-RLQTHTVYK-NLNPEWNKVFTFPIKD-----IHDVLEVTVFDE 75 (126)
T ss_dssp CSEEEEEEEEEEESCCCS-SSSSCCCEEEEEEETTE-EEECCCCSS-CSSCCCCEEEEEEESC-----TTCEEEEEEEEE
T ss_pred ccEEEEEEEEEeECCCCC-CCCCCcCeEEEEEcCCe-EEEEEeeCC-ceeEEEEEEEEEEEec-----cCceeEEEEEEc
Confidence 468999999999999998 78899999999999765 679999875 8999999999999976 367899999999
Q ss_pred C-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC--CCCCcceEEEEEEEEEe
Q 047341 82 G-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR--PSGRFQGVLSIGSMLID 134 (254)
Q Consensus 82 d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~--~~g~~~G~I~lsl~f~p 134 (254)
+ ..+|++||++.|+|.++..+. ..++.|.. ..++.+|+|+|++.|+.
T Consensus 76 ~~~~~d~~lG~~~i~l~~l~~~~------~~~~~l~~~~~~~~~~G~i~l~~~~i~ 125 (126)
T d2ep6a1 76 DGDKPPDFLGKVAIPLLSIRDGQ------PNCYVLKNKDLEQAFKGVIYLEMDLIY 125 (126)
T ss_dssp ETTEEEEECCBCEEEGGGCCSSC------CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred cCCcCcceEEEEEEEHHHCCCCC------ceEEEccccCCCCceeEEEEEEEEEEE
Confidence 8 456899999999999986543 24666643 35677899999999874
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.1e-21 Score=151.48 Aligned_cols=120 Identities=18% Similarity=0.384 Sum_probs=98.9
Q ss_pred ccEEEEEEEeeeCCCCCC--CCCCCCCeEEEEEECCc--CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPS--SKMRRMQTYALVWIDSS--TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~--d~~G~~DPYV~V~l~~~--~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|+||+... +..|.+||||++.+++. .+.+|++.++ +.||.|||+|.|.+... ....|.|+|
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~-t~nP~wne~f~f~i~~~----~~~~L~v~V 76 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNN-DINPVWNETFEFILDPN----QENVLEITL 76 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTT-CSSCEEEEEEEEEECTT----SCCEEEEEE
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCC-CccceeceeeeecccCc----ccCcEEEEE
Confidence 578999999999998741 34578999999999753 5679998765 89999999999999763 467899999
Q ss_pred EecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEe
Q 047341 79 YASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLID 134 (254)
Q Consensus 79 ~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p 134 (254)
||++..+|++||++.|+|.++..+. ....||+|.. ...|.|++.+.+.+
T Consensus 77 ~d~d~~~d~~lG~~~i~L~~l~~~~----~~~~~~~L~~---~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 77 MDANYVMDETLGTATFTVSSMKVGE----KKEVPFIFNQ---VTEMVLEMSLEVAS 125 (126)
T ss_dssp EECCSSCCEEEEEEEEEGGGSCTTC----EEEEEEEETT---TEEEEEEEEEECCC
T ss_pred EECCCCCCCeEEEEEEEHHHccCCC----eEEEEEEccC---CCeEEEEEEEEEEe
Confidence 9999888999999999999986543 3467899843 35799999988764
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.86 E-value=1.8e-21 Score=154.89 Aligned_cols=121 Identities=16% Similarity=0.204 Sum_probs=99.3
Q ss_pred cccEEEEEEEeeeCCCCCC----------CCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCC
Q 047341 2 ATQILEIILISAQGLKSPS----------SKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSET 71 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~----------d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~ 71 (254)
-.|.|+|+|++|++|++.. ...+.+||||+|.++.....+|++.++ +.||.|||.|.|.+.+ .
T Consensus 4 ~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~-t~~P~Wne~f~f~v~~------~ 76 (136)
T d1gmia_ 4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQK-TNSPAWHDEFVTDVCN------G 76 (136)
T ss_dssp EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSS-CSSCEEEEEEEEEEEE------E
T ss_pred EEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcC-CCCccCccEEEEEEec------C
Confidence 4689999999999998741 245789999999998766668888764 8999999999999975 5
Q ss_pred cEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCcceEEEEEEEEEeCC
Q 047341 72 SAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRFQGVLSIGSMLIDGS 136 (254)
Q Consensus 72 ~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p~~ 136 (254)
..|.|+|||++ ..+|++||.+.|+|.++..... .....|++|. ++|+|++.+.|.+.+
T Consensus 77 ~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~--~~~~~w~~L~-----p~G~v~l~v~~~~~~ 135 (136)
T d1gmia_ 77 RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGS--RHFEDWIDLE-----PEGKVYVIIDLSGSS 135 (136)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTC--SEEEEEEECB-----SSCEEEEEEEEEEEE
T ss_pred CceEEEEEEecCCCCceeEEEEEEEHHHhhhcCC--cceeEEEeCC-----CCcEEEEEEEEEeCC
Confidence 78999999998 4578999999999999876653 1235688874 579999999998753
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=8.6e-21 Score=150.53 Aligned_cols=122 Identities=22% Similarity=0.232 Sum_probs=96.0
Q ss_pred cEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC-
Q 047341 4 QILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG- 82 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d- 82 (254)
+.|+|+|++|++|++. +..+++||||+|.++++ .++|++.+ ++.||+|||.|.|.+.+ ...|.|+|||++
T Consensus 6 ~~L~v~v~~A~~~~~~-~~~~~~dpyv~v~~~~~-~~kT~v~~-~t~nP~wne~f~f~~~~------~~~l~~~V~d~d~ 76 (133)
T d2nq3a1 6 SQLQITVISAKLKENK-KNWFGPSPYVEVTVDGQ-SKKTEKCN-NTNSPKWKQPLTVIVTP------VSKLHFRVWSHQT 76 (133)
T ss_dssp EEEEEEEEEEEECCCC---CCCCCEEEEEEETTE-EEECCCCS-SCSSCEEEEEEEEEECT------TCEEEEEEEECCS
T ss_pred eEEEEEEEEeECCCcC-CCCCCcCeEEEEEECCe-EEeeEEEE-ecccEEEcceEEEEEEe------cceeEEEEEEccC
Confidence 6799999999999987 67789999999999875 57999876 48999999999999975 568999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCC-CCeeEEEEeeCCC--CCcceEEEEEEEEEe
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATK-TPSFTAFQIRRPS--GRFQGVLSIGSMLID 134 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~-~~~~~~~~L~~~~--g~~~G~I~lsl~f~p 134 (254)
+.+|++||++.|+|.++....... .....++.+..+. ....|+|.+.+.+..
T Consensus 77 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~ 131 (133)
T d2nq3a1 77 LKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ 131 (133)
T ss_dssp SSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred CCCCceEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence 557899999999999987643211 2234555555432 256799998887653
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=1.6e-20 Score=148.27 Aligned_cols=119 Identities=17% Similarity=0.219 Sum_probs=93.9
Q ss_pred cEEEEEEEeeeCCCCCC-CCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPS-SKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~-d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
..|+|+|++|++|+... +..+.+||||+|.+.+ ..+.+|+++++++.||.|||+|.|.+... ....|.|+|
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~----~~~~L~~~V 79 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP----DLALVRFMV 79 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG----GGCEEEEEE
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc----hhceEEEEE
Confidence 57999999999997531 4668899999999954 35679988877778999999999998753 357899999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEEE
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSMLI 133 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f~ 133 (254)
||++ ...|++||++.|||.++..+ ..+++|.++.|.. .++|.+.+.+.
T Consensus 80 ~D~d~~~~d~~iG~~~i~l~~l~~g-------~~~~~L~~~~g~~~~~~~L~v~i~~~ 130 (131)
T d1qasa2 80 EDYDSSSKNDFIGQSTIPWNSLKQG-------YRHVHLLSKNGDQHPSATLFVKISIQ 130 (131)
T ss_dssp EECCTTTCCEEEEEEEEEGGGBCCE-------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred EEecCCCCCcEEEEEEEEEeccCCC-------CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence 9999 44688999999999998543 4689998877764 56788877764
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=2.3e-19 Score=141.96 Aligned_cols=102 Identities=20% Similarity=0.328 Sum_probs=84.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEecC
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYASG 82 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D~d 82 (254)
++.|.|+|+.|++|+.. + +.||||+|.+++ .+.+|++.+ +.||+|||.|.|.+.. ....|.|+|||++
T Consensus 1 ~~~L~V~v~~a~~l~~~-~---~~dpYv~l~~~~-~k~~T~~~k--~~nP~Wne~f~f~v~~-----~~~~L~v~V~d~~ 68 (128)
T d2cjta1 1 MSLLCVGVKKAKFDGAQ-E---KFNTYVTLKVQN-VKSTTIAVR--GSQPSWEQDFMFEINR-----LDLGLTVEVWNKG 68 (128)
T ss_dssp CEEEEEEEEEEECSSCG-G---GCEEEEEEEETT-EEEECCCEE--SSSCEEEEEEEEEECC-----CSSEEEEEEEECC
T ss_pred CeEEEEEEEEEECCCCC-C---CcCeEEEEEeCC-EEEEEEEec--CCCCeEEEEEEEeecc-----ccceEEEEEEeCC
Confidence 46899999999999987 4 579999999975 477888875 5699999999999986 4678999999999
Q ss_pred CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 83 YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 83 ~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
..+|++||++.|||.++......+ ...||+|..+
T Consensus 69 ~~~d~~lG~~~I~L~~l~~~~~~~--~~~W~~L~~~ 102 (128)
T d2cjta1 69 LIWDTMVGTVWIPLRTIRQSNEEG--PGEWLTLDSQ 102 (128)
T ss_dssp SSCEEEEEEEEEEGGGSCBCSSCC--CCEEEECBC-
T ss_pred CcCCcceEEEEEEehhhccCCCCC--CCeeEECCcc
Confidence 778999999999999987654322 2468888543
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=2.4e-19 Score=141.12 Aligned_cols=105 Identities=20% Similarity=0.297 Sum_probs=87.4
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|+||+.. +..|.+||||+|.+.+ ..+.+|+++++ +.||+|||.|.|.+.... ....|.|+|
T Consensus 14 ~~~L~V~V~~a~~L~~~-d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~v~~~~---~~~~L~i~V 88 (132)
T d1a25a_ 14 REVLIVVVRDAKNLVPM-DPNGLSDPYVKLKLIPDPKSESKQKTKTIKC-SLNPEWNETFRFQLKESD---KDRRLSVEI 88 (132)
T ss_dssp SSEEEEEEEEEESCCCC-STTSCCCEEEEEEEESCTTCSSCEECCCCSS-CSSCEEEEEEEEECCSGG---GGCEEEEEE
T ss_pred CCEEEEEEEeeeCCCCC-CCCCCcCeEEEEEEccCCCCccccEEeeecC-CCCCccceEEEEEeEccc---cCCEEeEEE
Confidence 46899999999999988 8889999999999943 35679999875 899999999999987632 356899999
Q ss_pred EecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
||++ ..+|++||.+.|+|.++..+. ...||+|..
T Consensus 89 ~d~d~~~~d~~iG~~~i~l~~l~~~~-----~~~W~~L~~ 123 (132)
T d1a25a_ 89 WDWDLTSRNDFMGSLSFGISELQKAG-----VDGWFKLLS 123 (132)
T ss_dssp EECCSSSCCEEEEEEEEEHHHHTTCC-----EEEEEECBC
T ss_pred EecCCCCCCcEeEEEEEeHHHcCCCC-----CCeEEECCC
Confidence 9999 456899999999999985432 246899865
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=5.7e-19 Score=138.84 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=87.3
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
..+.|+|+|++|+||+.. +..|.+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|.+....+ ....|.|+||
T Consensus 16 ~~~~L~V~V~~a~~L~~~-~~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~~--~~~~L~v~V~ 91 (130)
T d1dqva1 16 GSDQLVVRILQALDLPAK-DSNGFSDPYVKIYLLPDRKKKFQTKVHRK-TLNPIFNETFQFSVPLAEL--AQRKLHFSVY 91 (130)
T ss_dssp SSCEEEEEEEEEECCCCC-STTSCCCEEEEEECTTSTTSCEECCCCCS-CSSCEEEEEEEEECCGGGG--SSCCCEEEEE
T ss_pred CCCEEEEEEEeeeCCccc-cCCCCcceEEEEEEccCCCceEeceeEcC-CCCeeeeeEEEEEEchHHc--CCCeEEEEEE
Confidence 457899999999999988 7889999999999954 35689999875 8999999999999876432 4678999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|++ ..+|++||++.|++........ .....||+|..
T Consensus 92 d~~~~~~d~~iG~~~i~~~~~l~~~~--~~~~~W~~L~~ 128 (130)
T d1dqva1 92 DFDRFSRHDLIGQVVLDNLLELAEQP--PDRPLWRDILE 128 (130)
T ss_dssp ECCSSSCCCEEEEEECCCTTGGGSSC--SSCCCCEECBC
T ss_pred EcCCCCCCceEEEEEECchhhhhcCC--CCCcEEEeccc
Confidence 998 5679999999998755433322 12346888864
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=9.4e-19 Score=139.60 Aligned_cols=106 Identities=20% Similarity=0.311 Sum_probs=87.8
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
.+.|+|+|++|+||+.. +..|.+||||+|.+.+ ..+.+|++.++ +.||+|||.|.|.+....+ ....|.|+|||
T Consensus 33 ~~~L~V~V~~a~~L~~~-~~~g~~dpyV~v~l~~~~~~~~kT~~~~~-t~~P~wne~f~f~i~~~~l--~~~~L~i~V~d 108 (143)
T d1rsya_ 33 NNQLLVGIIQAAELPAL-DMGGTSDPYVKVFLLPDKKKKFETKVHRK-TLNPVFNEQFTFKVPYSEL--GGKTLVMAVYD 108 (143)
T ss_dssp TTEEEEEEEEEESCCCC-STTSCCCEEEEEEEETTCCSCEECCCCTT-CSSCEEEEEEEECCCHHHH--TTCEEEEEEEE
T ss_pred CCEEEEEEEEccCCCCC-CCCCCCCeEEEEEEcCCCCeeEEEEEecc-ccCcceeeeeEEEEEeecc--CCceEEEEEEE
Confidence 46899999999999988 7889999999999943 45679998865 8999999999999875322 46789999999
Q ss_pred cC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 81 SG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 81 ~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
++ ..++++||.+.|+|.++..+. ....||+|.
T Consensus 109 ~d~~~~~~~iG~~~i~L~~~~~~~----~~~~W~~L~ 141 (143)
T d1rsya_ 109 FDRFSKHDIIGEFKVPMNTVDFGH----VTEEWRDLQ 141 (143)
T ss_dssp CCSSSCCEEEEEEEEEGGGCCCSS----CEEEEEECB
T ss_pred cCCCCCCcEEEEEEEEchhccCCC----CCccEEeCC
Confidence 98 456889999999999986543 245789885
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.75 E-value=2.8e-19 Score=141.75 Aligned_cols=108 Identities=17% Similarity=0.246 Sum_probs=86.6
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc-------------CeEEeEeecCCCCCCeeceEEEEEe-cCCCcc
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS-------------TKLCTRVDRAGAESPIWNEKFLFKV-TPEFLS 68 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~-------------~k~rTkv~k~gt~NP~WNE~f~F~v-~~~~l~ 68 (254)
.+.|+|+|++|+||+.. +..|.+||||+|.+.+. .+.||+++++ +.||+|||.|.|.+ ....+
T Consensus 17 ~~~L~V~V~~A~~L~~~-d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~~- 93 (142)
T d1rh8a_ 17 LGNLIIHILQARNLVPR-DNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQK-SLNPEWNQTVIYKSISMEQL- 93 (142)
T ss_dssp TTEEEEEEEEEESCCCC-SSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHH-HHSCEEEEEEEECSCCHHHH-
T ss_pred CCEEEEEEEEeECCCCc-CCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcC-CCCceeEEEEEEeeeccccc-
Confidence 47899999999999988 88899999999999542 1346877765 89999999999984 32211
Q ss_pred CCCcEEEEEEEecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCC
Q 047341 69 SETSAISVEIYASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRP 118 (254)
Q Consensus 69 ~~~~~L~veV~D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~ 118 (254)
....|.|+|||++ ..+|++||++.|+|.++..... ...||+|...
T Consensus 94 -~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~----~~~W~~L~~~ 139 (142)
T d1rh8a_ 94 -MKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDN----TPRWYPLKEQ 139 (142)
T ss_dssp -TTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTT----CCEEEECBCC
T ss_pred -CCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCC----ceEEEECcCc
Confidence 4678999999998 5678999999999999876543 3579999754
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=7.5e-18 Score=131.22 Aligned_cols=106 Identities=14% Similarity=0.303 Sum_probs=83.2
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISV 76 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~v 76 (254)
..+.|+|+|++|+||+.. +..+.+||||+|.+.+ ..+.+|++.++ +.||.|||+|.|. +..+.+ ....|.|
T Consensus 12 ~~~~L~V~V~~a~~L~~~-~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~f~~~~~~~l--~~~~L~i 87 (125)
T d2bwqa1 12 VGHQLIVTILGAKDLPSR-EDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK-TLEPKWNQTFIYSPVHRREF--RERMLEI 87 (125)
T ss_dssp TTTEEEEEEEEEESCCCC-TTSCCBCEEEEEEEESSCSGGGEEECCCCSS-BSSCEEEEEEEECSCCGGGG--GGCEEEE
T ss_pred CCCEEEEEEEEeECCCCc-CCCCCCCEEEEEEEeCCCCCccccccCEEcC-CCCCEEccEEEEeeeChhhc--CCCEEEE
Confidence 357899999999999988 7889999999999943 34679999874 8999999999996 554322 4568999
Q ss_pred EEEecCCC---CCceeEEEEEeCccccccCCCCCCeeEEEEee
Q 047341 77 EIYASGYL---RDYLIGTVRFLVSNISLSVATKTPSFTAFQIR 116 (254)
Q Consensus 77 eV~D~d~~---~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~ 116 (254)
.|||.+.. ++++||++.|+|.++..... ..||+|.
T Consensus 88 ~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-----~~Wy~L~ 125 (125)
T d2bwqa1 88 TLWDQARVREEESEFLGEILIELETALLDDE-----PHWYKLQ 125 (125)
T ss_dssp EEEEC-------CEEEEEEEEEGGGCCCSSC-----EEEEECC
T ss_pred EEEECCCCCCCCCeeEEEEEEEchhcCCCCC-----CEEEeCc
Confidence 99998832 35699999999999865442 4688873
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.9e-17 Score=131.34 Aligned_cols=96 Identities=26% Similarity=0.350 Sum_probs=78.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCC-CCCeEEEEEECC--cCeEEeEeecCCCCCCeeceEEEEE-ecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMR-RMQTYALVWIDS--STKLCTRVDRAGAESPIWNEKFLFK-VTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G-~~DPYV~V~l~~--~~k~rTkv~k~gt~NP~WNE~f~F~-v~~~~l~~~~~~L~veV 78 (254)
...|+|+|++|+||+.. +..+ .+||||+|.+.+ ..+.+|+++++ +.||+|||+|.|. ++...+ ....|.|+|
T Consensus 21 ~~~L~V~V~~a~~L~~~-d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~l--~~~~L~~~V 96 (138)
T d1ugka_ 21 RKAFVVNIKEARGLPAM-DEQSMTSDPYIKMTILPEKKHKVKTRVLRK-TLDPAFDETFTFYGIPYTQI--QELALHFTI 96 (138)
T ss_dssp GTEEEEEEEEEESCCCC-BTTTTBCEEEEEEEEETTTCSEEECCCCSS-CSSCEEEEEEEEECCCSTTG--GGCEEEEEE
T ss_pred CCEEEEEEEEecCCCCC-CCCCCccceEEEEEEcCCCCEeEeCeeEeC-CCCCceeeEEEEeeeCHHHc--ccceEEEEE
Confidence 46899999999999987 5555 479999999954 45679999865 8999999999997 554322 356899999
Q ss_pred EecC-CCCCceeEEEEEeCcccccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNISLS 102 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~~~ 102 (254)
||.+ +.+|++||++.|+|.++...
T Consensus 97 ~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 97 LSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp EEECSSCCCCCCEEEEEECTTCCCT
T ss_pred EECCCCCCCcEEEEEEEEcccccCC
Confidence 9998 56799999999999998543
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=7.1e-17 Score=126.92 Aligned_cols=95 Identities=15% Similarity=0.274 Sum_probs=79.8
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC----cCeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDS----STKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~----~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|+|+|++|+||+.. +..+..||||+|.+.+ ..+.+|++.++ +.||+|||.|.|.++...+ ....|.|.
T Consensus 13 ~~~~L~V~v~~a~nL~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l--~~~~l~v~ 88 (137)
T d2cm5a1 13 QQGGLIVGIIRCVHLAAM-DANGYSDPFVKLWLKPDMGKKAKHKTQIKKK-TLNPEFNEEFFYDIKHSDL--AKKSLDIS 88 (137)
T ss_dssp TTTEEEEEEEEEESCCCC-STTSCCCEEEEEEEETC---CCEEECCCCCS-CSSCEEEEEEEEECCGGGG--GGCEEEEE
T ss_pred CCCEEEEEEEEEECCCCC-CCCCCcCeEEEEEEEcCCccceeecCEeEcC-CCCCccceEEEEEeEHHHc--cccEEEEE
Confidence 357899999999999987 7788999999999843 24678998875 8999999999999976433 46789999
Q ss_pred EEecC-CCCCceeEEEEEeCcccc
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~ 100 (254)
|||.+ ..++++||++.|++..+.
T Consensus 89 v~~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 89 VWDYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp EEECCSSSCCEEEEEEEEETTCCH
T ss_pred eeeCCCCCCCCEEEEEEeCccccC
Confidence 99998 457899999999997643
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=6.4e-17 Score=130.94 Aligned_cols=112 Identities=17% Similarity=0.239 Sum_probs=86.9
Q ss_pred cccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEE
Q 047341 2 ATQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVE 77 (254)
Q Consensus 2 ~~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~ve 77 (254)
..+.|.|+|++|+||+.. +..+.+||||+|.+.+. .+.+|++.+ ++.||+|||+|.|.++...+ ....|.|.
T Consensus 23 ~~~~L~V~V~~a~~L~~~-~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~-~t~nP~wne~f~F~v~~~~l--~~~~l~i~ 98 (157)
T d1uowa_ 23 TAGKLTVVILEAKNLKKM-DVGGLSDPYVKIHLMQNGKRLKKKKTTIKK-NTLNPYYNESFSFEVPFEQI--QKVQVVVT 98 (157)
T ss_dssp TTTEEEEEEEEEESCCCC-STTSCCCEEEEEEEEETTEEEEEEECCCCC-SCSSCEEEEEEEEECCGGGG--GGCEEEEE
T ss_pred CCCEEEEEEEEEEEcccc-cCCCCCCeeEEEEEecCCccccceeccccc-CCCCcccCCeEEEEecHHHc--CccEEEEE
Confidence 357899999999999988 78899999999999542 235788876 59999999999999986433 46789999
Q ss_pred EEecC-CCCCceeEEEEEeCccccccCC--------CCCCeeEEEEeeC
Q 047341 78 IYASG-YLRDYLIGTVRFLVSNISLSVA--------TKTPSFTAFQIRR 117 (254)
Q Consensus 78 V~D~d-~~~D~~LG~~~IpL~~l~~~~~--------~~~~~~~~~~L~~ 117 (254)
|||.+ +.++++||++.|++........ .+.+...||.|..
T Consensus 99 v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~ 147 (157)
T d1uowa_ 99 VLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147 (157)
T ss_dssp EEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred EcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence 99998 5578999999999976421100 1223457888864
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=8e-17 Score=127.69 Aligned_cols=104 Identities=13% Similarity=0.195 Sum_probs=84.3
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc---CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS---TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIY 79 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~---~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~ 79 (254)
.+.|.|+|++|++|.. .|.+||||+|.+.+. .+.+|++.++ +.||+|||.|.|.+....+ ....|.|+||
T Consensus 25 ~~~L~V~v~~a~~L~~----~g~~dpyVkv~l~~~~~~~~~kT~v~~~-~~~P~wne~f~f~v~~~~l--~~~~L~~~V~ 97 (138)
T d1wfma_ 25 KAELFVTRLEAVTSNH----DGGCDCYVQGSVANRTGSVEAQTALKKR-QLHTTWEEGLVLPLAEEEL--PTATLTLTLR 97 (138)
T ss_dssp TTEEEEEEEEEECCCC----SSCCCEEEEEEEEETTEEEEEECCCCCC-CSSEECSSCEEEECCTTSS--TTCEEEEEEE
T ss_pred CCEEEEEEEEcCCCCC----CCCcCcEEEEEECCCCCccceeeeEECC-CCCceEeeeEEEEeeehhc--cceEEEEEEe
Confidence 5689999999999954 367899999999654 2468888765 9999999999999976433 5788999999
Q ss_pred ecC-CCCCceeEEEEEeCccccccCCCCCCeeEEEEeeC
Q 047341 80 ASG-YLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRR 117 (254)
Q Consensus 80 D~d-~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~ 117 (254)
|.+ ..++++||++.|+|.++..... ...||.|..
T Consensus 98 d~~~~~~~~~iG~~~i~L~~l~~~~~----~~~W~~L~~ 132 (138)
T d1wfma_ 98 TCDRFSRHSVAGELRLGLDGTSVPLG----AAQWGELKT 132 (138)
T ss_dssp ECCSSCTTSCSEEEEEESSSSSSCTT----CCEEEECCC
T ss_pred eecccccceeeeEEEEEhHHccCCCC----ceEeEeCCC
Confidence 998 5568999999999999854332 357999865
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.70 E-value=5.2e-17 Score=128.57 Aligned_cols=93 Identities=22% Similarity=0.297 Sum_probs=73.2
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|.|+|++|+||+.. +..+.+||||+|.+.+. .+.+|++.++ +.||.|||+|.|.++...+ ....|.|.|
T Consensus 14 ~~~L~V~v~~a~~L~~~-~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~--~~~~l~i~v 89 (138)
T d1w15a_ 14 TNTLTVVVLKARHLPKS-DVSGLSDPYVKVNLYHAKKRISKKKTHVKKC-TPNAVFNELFVFDIPCESL--EEISVEFLV 89 (138)
T ss_dssp TTEEEEEEEEEESCC-------CCCEEEEEEEEETTEEEEEEECCCCCS-CSSEEEEEEEEEECCSSSS--TTEEEEEEE
T ss_pred CCEEEEEEEEeECCCCC-CCCCCcCEEEEEEEeCCcccCccccceeECC-CCCCeECcEEEEEecHHHh--CccEEEEEE
Confidence 46899999999999988 78889999999998432 3457888764 8999999999999976543 567899999
Q ss_pred EecC-CCCCceeEEEEEeCccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNI 99 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l 99 (254)
||.+ ..++++||++.|++...
T Consensus 90 ~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 90 LDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp EECCTTSCCEEEEEEEESTTCC
T ss_pred EeCCCCCCCCEEEEEEEcchhC
Confidence 9998 56799999999999764
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=2e-16 Score=123.74 Aligned_cols=114 Identities=13% Similarity=0.099 Sum_probs=84.3
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEEEe
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEIYA 80 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV~D 80 (254)
.|+|.|... +|.......+.+||||+|.+++. .+.+|++.++ |+||+|||+|.|.|.+ ...|.|.|||
T Consensus 4 ~~~~~~~~~-~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kk-T~nP~WnE~F~~~v~~------~~~l~i~V~d 75 (123)
T d1bdya_ 4 FLRISFNSY-ELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKP-TMYPEWKSTFDAHIYE------GRVIQIVLMR 75 (123)
T ss_dssp EEEEEEEEE-ECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSC-CBCCCTTCEEEEECCT------TCEEEEEEEE
T ss_pred eEEEEEEEe-ecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCC-CCCcccceEEEEEEcc------ccEEEEEEEE
Confidence 355555444 33332245688999999999642 2346777664 9999999999999975 6789999999
Q ss_pred cCCCCCceeEEEEEeCccccccCC-CCCCeeEEEEeeCCCCCcceEEEEEEEEEe
Q 047341 81 SGYLRDYLIGTVRFLVSNISLSVA-TKTPSFTAFQIRRPSGRFQGVLSIGSMLID 134 (254)
Q Consensus 81 ~d~~~D~~LG~~~IpL~~l~~~~~-~~~~~~~~~~L~~~~g~~~G~I~lsl~f~p 134 (254)
++ |+++|.+.|++.++..... .+.....|+.|. +.|+|++++.|..
T Consensus 76 ~d---d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~-----~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 76 AA---EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-----PQAKVLMCVQYFL 122 (123)
T ss_dssp ET---TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB-----SSCEEEEEEEEEE
T ss_pred cc---ccccCccEEehhheeeccccCCCcccEEEeCC-----CCEEEEEEEEEec
Confidence 75 7899999999999865322 122345788874 5899999999985
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.4e-15 Score=118.78 Aligned_cols=109 Identities=21% Similarity=0.340 Sum_probs=81.7
Q ss_pred EEEEEEEeeeCCCCCCCCCCCCCeEEEEEECC-----cCeEEeEe-ecCCCCCCeeceE-EEE-EecCCCccCCCcEEEE
Q 047341 5 ILEIILISAQGLKSPSSKMRRMQTYALVWIDS-----STKLCTRV-DRAGAESPIWNEK-FLF-KVTPEFLSSETSAISV 76 (254)
Q Consensus 5 ~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~-----~~k~rTkv-~k~gt~NP~WNE~-f~F-~v~~~~l~~~~~~L~v 76 (254)
+|.|+|++|++|+.. +.||||+|.+.| ..+.+|++ .++++.||+|||. |.| .+... +...|.|
T Consensus 2 tl~V~Visaq~L~~~-----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~----~l~~L~f 72 (122)
T d2zkmx2 2 TLSITVISGQFLSER-----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMP----ELASLRV 72 (122)
T ss_dssp EEEEEEEEEESCCSS-----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSG----GGCEEEE
T ss_pred EEEEEEEEeeCCCCC-----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCC----cccEEEE
Confidence 699999999999875 379999999953 23445554 3456999999976 444 34432 3568999
Q ss_pred EEEecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCCc--ceEEEEEEEE
Q 047341 77 EIYASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGRF--QGVLSIGSML 132 (254)
Q Consensus 77 eV~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~~--~G~I~lsl~f 132 (254)
.|||++ |++||++.|||+.+..+ .++++|+++.|.+ .+.|.+.+.+
T Consensus 73 ~V~D~d---~~~lG~~~ipl~~l~~G-------yR~vpL~~~~g~~l~~~~L~v~i~~ 120 (122)
T d2zkmx2 73 AVMEEG---NKFLGHRIIPINALNSG-------YHHLCLHSESNMPLTMPALFIFLEM 120 (122)
T ss_dssp EEEETT---TEEEEEEEEEGGGBCCE-------EEEEEEECTTCCEEEEEEEEEEEEE
T ss_pred EEECCC---CCEEEEEEEEcccCcCC-------ceEEEccCCCcCCCCCceEEEEEEE
Confidence 999975 89999999999988654 4788999877763 4556655554
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=7.8e-17 Score=128.41 Aligned_cols=94 Identities=22% Similarity=0.313 Sum_probs=79.5
Q ss_pred ccEEEEEEEeeeCCCCCCCCCCCCCeEEEEEECCc----CeEEeEeecCCCCCCeeceEEEEEecCCCccCCCcEEEEEE
Q 047341 3 TQILEIILISAQGLKSPSSKMRRMQTYALVWIDSS----TKLCTRVDRAGAESPIWNEKFLFKVTPEFLSSETSAISVEI 78 (254)
Q Consensus 3 ~g~L~V~VisA~~L~~~~d~~G~~DPYV~V~l~~~----~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~~~~~~L~veV 78 (254)
.+.|+|+|++|+||+.. +..+.+||||+|.+.+. .+.+|++.++ +.||+|||.|.|.++...+ ....|.|.|
T Consensus 19 ~~~L~V~V~~a~nL~~~-~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~-t~~P~wne~f~F~v~~~~~--~~~~l~v~v 94 (145)
T d1dqva2 19 AGLLTVTIIKASNLKAM-DLTGFSDPYVKASLISEGRRLKKRKTSIKKN-TLNPTYNEALVFDVAPESV--ENVGLSIAV 94 (145)
T ss_dssp TTEEEEEEEEEESCCCC-SSSSCCCEEEEECCCTTCCTTSCEECCCCCS-CSSCEEEECCCCCCCSGGG--GSCCCCCEE
T ss_pred CCEEEEEEEEEeCCCCc-CCCCCcCceEEEEEccCCccceeecCEEEeC-CCCceecceEEEEEehhhc--CCCEEEEEE
Confidence 57899999999999987 78889999999999653 3568988865 8999999999999876433 467899999
Q ss_pred EecC-CCCCceeEEEEEeCcccc
Q 047341 79 YASG-YLRDYLIGTVRFLVSNIS 100 (254)
Q Consensus 79 ~D~d-~~~D~~LG~~~IpL~~l~ 100 (254)
||.+ ..+|++||.+.|++..+.
T Consensus 95 ~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 95 VDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp EECCSSSCCEEEEECCCSSCTTC
T ss_pred EecCCCCCCcEEEEEEECchHcC
Confidence 9998 557899999999997753
|
| >d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Fantom species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.19 Score=38.35 Aligned_cols=124 Identities=15% Similarity=0.032 Sum_probs=82.0
Q ss_pred cEEEEEEEeeeCCCCCCCCCC--CCCeEEEEEECCcCeEEeEeecCCCCCCeeceEEEEEecCCCcc---CCCcEEEEEE
Q 047341 4 QILEIILISAQGLKSPSSKMR--RMQTYALVWIDSSTKLCTRVDRAGAESPIWNEKFLFKVTPEFLS---SETSAISVEI 78 (254)
Q Consensus 4 g~L~V~VisA~~L~~~~d~~G--~~DPYV~V~l~~~~k~rTkv~k~gt~NP~WNE~f~F~v~~~~l~---~~~~~L~veV 78 (254)
+.++|+|.++.--+..-...+ .+-.||.+.+-......|++.. +.+|.+|-+-.|.|..+.+. .+...+.|++
T Consensus 10 nlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~TPv~~--g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~lel 87 (142)
T d2yrba1 10 NLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR--GLHPEYNFTSQYLVHVNDLFLQYIQKNTITLEV 87 (142)
T ss_dssp EEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE--SSSCCCCEEEEEEECCSHHHHHHHHHCCEEEEE
T ss_pred cEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecCceec--CCCCcceeEEEEEEccCHHHHHHHhhCCEEEEE
Confidence 567888887732111000012 2455888877665667898886 79999999988888663210 0256789999
Q ss_pred EecCCCCCceeEEEEEeCccccccCCCCCCeeEEEEeeCCCCC--cceEEEEEEEE
Q 047341 79 YASGYLRDYLIGTVRFLVSNISLSVATKTPSFTAFQIRRPSGR--FQGVLSIGSML 132 (254)
Q Consensus 79 ~D~d~~~D~~LG~~~IpL~~l~~~~~~~~~~~~~~~L~~~~g~--~~G~I~lsl~f 132 (254)
+......-..|+.+.|.+.+++.... .....-.|..+.|. .-|.|.+-+++
T Consensus 88 hqa~g~~~~tvA~g~i~l~~lLd~~~---r~~~s~~l~g~~~~~~~~G~leyw~rl 140 (142)
T d2yrba1 88 HQAYSTEYETIAACQLKFHEILEKSG---RIFCTASLIGTKGDIPNFGTVEYWFRL 140 (142)
T ss_dssp EEECSSCEEEEEEEEECCSHHHHCCS---CEEEEEEECBSSSCCTTSEEEEEEEEE
T ss_pred EeecCCCcceeEEEEEEhhHhhCccc---cccceeEEEccCCCcceEEEEEEEEEE
Confidence 98764444689999999999987643 12344456555554 48999888775
|