Citrus Sinensis ID: 047378

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQISITK
Secondary Structure (PSIPRED)
cccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccEEEEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcc
Coil and Loop (DISEMBL)
maglpsviMAEIfpinikgsAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFlvpetkgrtlEEIQISITK
Flexible Loop (DISEMBL)
MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLvpetkgrtleeiqisitk
Low Complexity Region (SEG)
MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQISITK
Disordered region (IsUnstruct)
*****SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTL*********
Disordered Region (DISOPRED)
MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQISI**
Disordered Region (DISEMBL)
MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQISITK
Disordered Region (DISPRO)
*AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQISIT*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQISITK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q3ECP7	470	Sugar transporter ERD6-li	yes	no	0.977	0.180	0.611	1e-23
Q0WQ63	470	Sugar transporter ERD6-li	no	no	0.942	0.174	0.548	1e-20
Q94KE0	470	Sugar transporter ERD6-li	no	no	1.0	0.185	0.528	2e-20
O04036	496	Sugar transporter ERD6 OS	no	no	0.942	0.165	0.560	5e-20
Q8LBI9	482	Sugar transporter ERD6-li	no	no	1.0	0.180	0.528	8e-20
Q4F7G0	462	Sugar transporter ERD6-li	no	no	1.0	0.188	0.517	3e-19
Q9LTP6	488	Putative sugar transporte	no	no	1.0	0.178	0.505	1e-18
Q93Z80	458	Sugar transporter ERD6-li	no	no	0.988	0.187	0.534	2e-18
P93051	463	Sugar transporter ERD6-li	no	no	0.942	0.177	0.524	4e-18
Q94AF9	467	Sugar transporter ERD6-li	no	no	0.988	0.184	0.523	6e-18

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M G+P VIM+EIFPI+IKGSAGSLV ++   G+WI++ TF+F+M W+  G F +F  +C 
Sbjct: 381 MGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCG 440

Query: 61  VAVLFVAFLVPETKGRTLEEIQISI 85
             V+FVA LVPETKGRTLEEIQ SI
Sbjct: 441 ATVIFVAKLVPETKGRTLEEIQYSI 465

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0WQ63|ERDL8_ARATH Sugar transporter ERD6-like 8 OS=Arabidopsis thaliana GN=At3g05150 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/82 (54%), Positives = 65/82 (79%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M  +P VIM+EIFPIN+KG+AG LV +++   +W+V+ TF+F+M WS  G F ++  +C+
Sbjct: 385 MGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCV 444

Query: 61  VAVLFVAFLVPETKGRTLEEIQ 82
           +A++F+A LVPETKGRTLEEIQ
Sbjct: 445 LAIIFIAKLVPETKGRTLEEIQ 466

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94KE0|ERDL3_ARATH Sugar transporter ERD6-like 3 OS=Arabidopsis thaliana GN=SUGTL2 PE=2 SV=1

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 64/87 (73%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M GLP +IM+EIFP+N+K SAG+LV L +    WIV   ++FM+EW+ +G F IF+ IC 
Sbjct: 381 MGGLPWIIMSEIFPMNVKVSAGTLVTLANWSFGWIVAFAYNFMLEWNASGTFLIFFTICG 440

Query: 61  VAVLFVAFLVPETKGRTLEEIQISITK 87
             ++F+  +VPETKGRTLE+IQ S+T 
Sbjct: 441 AGIVFIYAMVPETKGRTLEDIQASLTD 467

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|O04036|ERD6_ARATH Sugar transporter ERD6 OS=Arabidopsis thaliana GN=ERD6 PE=1 SV=3

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 64/82 (78%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M GLP +IMAEIFP+N+K SAG+LV + +    WI+T TF+FM+EW+ +G F IF ++  
Sbjct: 407 MGGLPWIIMAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSA 466

Query: 61  VAVLFVAFLVPETKGRTLEEIQ 82
            +++F+ FLVPETKGR+LEEIQ
Sbjct: 467 SSIVFIYFLVPETKGRSLEEIQ 488

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBI9|EDL16_ARATH Sugar transporter ERD6-like 16 OS=Arabidopsis thaliana GN=At5g18840 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 62/87 (71%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M  +P VIM+EIFPIN+KG AGSLV+L++  G W V+ TF+F+M WS  G F ++     
Sbjct: 394 MGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAA 453

Query: 61  VAVLFVAFLVPETKGRTLEEIQISITK 87
             ++FVA +VPETKG+TLEEIQ  I +
Sbjct: 454 ATIIFVAKMVPETKGKTLEEIQACIRR 480

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 45/87 (51%), Positives = 66/87 (75%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           + GLP VIM+EIFP+N+K +AGSLV + +   NWI+  +F+FM++WS +G + IF  + +
Sbjct: 374 LGGLPWVIMSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMIQWSASGTYFIFSGVSL 433

Query: 61  VAVLFVAFLVPETKGRTLEEIQISITK 87
           V ++F+  LVPETKGRTLEEIQ S+ +
Sbjct: 434 VTIVFIWTLVPETKGRTLEEIQTSLVR 460

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTP6|EDL13_ARATH Putative sugar transporter ERD6-like 13 OS=Arabidopsis thaliana GN=At3g20460 PE=3 SV=2

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/87 (50%), Positives = 64/87 (73%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           + G+P V+++E+ PINIKGSAG+L  L     NW V+ TF+F+ +WS +G F I+ +I  
Sbjct: 402 IGGIPWVMISEMTPINIKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFFIYTMISG 461

Query: 61  VAVLFVAFLVPETKGRTLEEIQISITK 87
           V +LFV  +VPET+GR+LEEIQ +IT+
Sbjct: 462 VGILFVMKMVPETRGRSLEEIQAAITR 488

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 46/86 (53%), Positives = 62/86 (72%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           + GLP +IM+EIFPINIK SAGS+V L      W V+  F+FM EWS  G F IF ++  
Sbjct: 370 IGGLPWIIMSEIFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFEWSAQGTFYIFAMVGG 429

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           +++LF+  LVPETKG++LEE+Q S+T
Sbjct: 430 LSLLFIWMLVPETKGQSLEELQASLT 455

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P93051|ERDL7_ARATH Sugar transporter ERD6-like 7 OS=Arabidopsis thaliana GN=At2g48020 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 59/82 (71%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M  +P V+M+EIFPINIKG AG +  L++  G W V+ TF+F+M WS  G F I+  I  
Sbjct: 377 MGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINA 436

Query: 61  VAVLFVAFLVPETKGRTLEEIQ 82
           +A++FV  +VPETKG+TLE+IQ
Sbjct: 437 LAIVFVIAIVPETKGKTLEQIQ 458

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           + GLP VIM+EIFPINIK SAG++V L      W V+  F+FM EWS  G F IF  +  
Sbjct: 379 IGGLPWVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEWSAQGTFYIFAAVGG 438

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           ++ +F+  LVPETKG++LEE+Q S+T
Sbjct: 439 MSFIFIWMLVPETKGQSLEELQASLT 464

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
359487967	1179	PREDICTED: uncharacterized protein LOC10	0.988	0.072	0.651	2e-23
298205021	490	unnamed protein product [Vitis vinifera]	0.988	0.175	0.651	3e-23
224130930	478	predicted protein [Populus trichocarpa]	0.988	0.179	0.639	9e-23
225451069	488	PREDICTED: putative ERD6-like transporte	0.988	0.176	0.639	1e-22
298205031	517	unnamed protein product [Vitis vinifera]	0.988	0.166	0.639	2e-22
224125374	442	predicted protein [Populus trichocarpa]	0.988	0.194	0.627	3e-22
255542520	488	sugar transporter, putative [Ricinus com	0.988	0.176	0.627	4e-22
3776581	483	Similar to Beta integral membrane protei	0.977	0.175	0.611	4e-22
30695810	470	sugar transporter ERD6-like 5 [Arabidops	0.977	0.180	0.611	6e-22
255542516	476	sugar transporter, putative [Ricinus com	0.988	0.180	0.604	8e-22

>gi|359487967|ref|XP_002263811.2| PREDICTED: uncharacterized protein LOC100264207 [Vitis vinifera]

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 66/86 (76%)

Query: 1    MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
            M G+P +IM+EIFPINIKG AGSLV  +   G+W+V CTF+F+ EWS  G F IF  IC 
Sbjct: 1090 MGGIPWIIMSEIFPINIKGPAGSLVTFVCWFGSWLVACTFYFLFEWSSAGTFFIFSSICG 1149

Query: 61   VAVLFVAFLVPETKGRTLEEIQISIT 86
            + VLF+A LVPETKGRTLEEIQ SIT
Sbjct: 1150 LGVLFIAKLVPETKGRTLEEIQASIT 1175

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205021|emb|CBI34328.3| unnamed protein product [Vitis vinifera] gi|310877870|gb|ADP37166.1| putative ERD6-like transporter [Vitis vinifera]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 66/86 (76%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M G+P +IM+EIFPINIKG AGSLV  +   G+W+V CTF+F+ EWS  G F IF  IC 
Sbjct: 401 MGGIPWIIMSEIFPINIKGPAGSLVTFVCWFGSWLVACTFYFLFEWSSAGTFFIFSSICG 460

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           + VLF+A LVPETKGRTLEEIQ SIT
Sbjct: 461 LGVLFIAKLVPETKGRTLEEIQASIT 486

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130930|ref|XP_002328411.1| predicted protein [Populus trichocarpa] gi|222838126|gb|EEE76491.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 68/86 (79%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M+G+P VIM+EIFP+++K SAGSLV L++  G+WIVT +F+FMMEWS TG F  F  IC 
Sbjct: 386 MSGIPWVIMSEIFPLDVKASAGSLVTLVNWSGSWIVTYSFNFMMEWSSTGTFFFFATICG 445

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           V  LF+  LVPETKGRTLEEIQ +IT
Sbjct: 446 VTALFIWKLVPETKGRTLEEIQATIT 471

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451069|ref|XP_002263418.1| PREDICTED: putative ERD6-like transporter [Vitis vinifera] gi|310877850|gb|ADP37156.1| putative ERD6-like transporter [Vitis vinifera]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M G+P VIM+EIFPIN+KGSAGSLV L+   G+WI++  F+F+M+WS  G F IF  IC 
Sbjct: 392 MGGIPWVIMSEIFPINMKGSAGSLVTLVSWLGSWIISYAFNFLMKWSSAGTFFIFSSICG 451

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           + VLFVA LVPETKGRTLEEIQ S+ 
Sbjct: 452 ITVLFVAKLVPETKGRTLEEIQASMN 477

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298205031|emb|CBI34338.3| unnamed protein product [Vitis vinifera]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M G+P VIM+EIFPIN+KGSAGSLV L+   G+WI++  F+F+M+WS  G F IF  IC 
Sbjct: 421 MGGIPWVIMSEIFPINMKGSAGSLVTLVSWLGSWIISYAFNFLMKWSSAGTFFIFSSICG 480

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           + VLFVA LVPETKGRTLEEIQ S+ 
Sbjct: 481 ITVLFVAKLVPETKGRTLEEIQASMN 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125374|ref|XP_002319570.1| predicted protein [Populus trichocarpa] gi|222857946|gb|EEE95493.1| predicted protein [Populus trichocarpa]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M G+P VIM+E+FPIN KGSAGSLV L+   G+WI++  F+F+M+WS  G F IF  IC 
Sbjct: 351 MGGIPWVIMSEVFPINTKGSAGSLVTLVSWLGSWIISYAFNFLMDWSSAGTFFIFSCICG 410

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           + VLFVA LVPETKGRTLEEIQ S+ 
Sbjct: 411 LTVLFVAKLVPETKGRTLEEIQASMN 436

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542520|ref|XP_002512323.1| sugar transporter, putative [Ricinus communis] gi|223548284|gb|EEF49775.1| sugar transporter, putative [Ricinus communis]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M G+P VIM+E+FPIN+KGSAGSLV L+   G+WI++  F+F+M WS  G F IF  IC 
Sbjct: 397 MGGIPWVIMSEVFPINMKGSAGSLVTLVSWLGSWIISYAFNFLMTWSSAGTFLIFSSICG 456

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           + VLFVA LVPETKGRTLEEIQ S+ 
Sbjct: 457 LTVLFVAKLVPETKGRTLEEIQASMN 482

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3776581|gb|AAC64898.1| Similar to Beta integral membrane protein homolog gb|U43629 from A. thaliana [Arabidopsis thaliana]

 Score =  108 bits (270), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M G+P VIM+EIFPI+IKGSAGSLV ++   G+WI++ TF+F+M W+  G F +F  +C 
Sbjct: 394 MGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCG 453

Query: 61  VAVLFVAFLVPETKGRTLEEIQISI 85
             V+FVA LVPETKGRTLEEIQ SI
Sbjct: 454 ATVIFVAKLVPETKGRTLEEIQYSI 478

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30695810|ref|NP_850964.1| sugar transporter ERD6-like 5 [Arabidopsis thaliana] gi|117940128|sp|Q3ECP7.2|ERDL5_ARATH RecName: Full=Sugar transporter ERD6-like 5 gi|332195018|gb|AEE33139.1| sugar transporter ERD6-like 5 [Arabidopsis thaliana]

 Score =  107 bits (268), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           M G+P VIM+EIFPI+IKGSAGSLV ++   G+WI++ TF+F+M W+  G F +F  +C 
Sbjct: 381 MGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCG 440

Query: 61  VAVLFVAFLVPETKGRTLEEIQISI 85
             V+FVA LVPETKGRTLEEIQ SI
Sbjct: 441 ATVIFVAKLVPETKGRTLEEIQYSI 465

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542516|ref|XP_002512321.1| sugar transporter, putative [Ricinus communis] gi|223548282|gb|EEF49773.1| sugar transporter, putative [Ricinus communis]

 Score =  107 bits (267), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 69/86 (80%)

Query: 1   MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
           MAG+P +IM+E+FPINIKG AGSLVI ++   +W+V+ TF+FMMEWS +G F I+  +C 
Sbjct: 387 MAGIPWIIMSEVFPINIKGVAGSLVIAINWTCSWVVSYTFNFMMEWSSSGTFFIYAGVCA 446

Query: 61  VAVLFVAFLVPETKGRTLEEIQISIT 86
           +AVLF+A +VPETKGR LEE+Q SI 
Sbjct: 447 LAVLFIAKVVPETKGRMLEELQASIA 472

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
TAIR|locus:2199539	470	AT1G54730 [Arabidopsis thalian	0.977	0.180	0.611	5.6e-23
TAIR|locus:2096219	470	AT3G05150 [Arabidopsis thalian	0.942	0.174	0.548	7.2e-21
TAIR|locus:2036084	496	ERD6 "EARLY RESPONSE TO DEHYDR	0.942	0.165	0.560	3.1e-20
TAIR|locus:2144975	482	AT5G18840 "AT5G18840" [Arabido	1.0	0.180	0.528	9.9e-20
TAIR|locus:2036009	462	AT1G08900 [Arabidopsis thalian	1.0	0.188	0.517	1.1e-19
TAIR|locus:2096234	458	AT3G05160 [Arabidopsis thalian	0.988	0.187	0.534	2.3e-18
TAIR|locus:2092379	488	AT3G20460 [Arabidopsis thalian	1.0	0.178	0.505	2.7e-18
TAIR|locus:2066400	463	AT2G48020 [Arabidopsis thalian	0.942	0.177	0.524	5e-18
TAIR|locus:505006329	467	AT3G05165 [Arabidopsis thalian	0.988	0.184	0.523	5.1e-18
TAIR|locus:2146350	474	SFP1 [Arabidopsis thaliana (ta	0.977	0.179	0.564	8.9e-18

TAIR|locus:2199539 AT1G54730 [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 5.6e-23, P = 5.6e-23
 Identities = 52/85 (61%), Positives = 66/85 (77%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             M G+P VIM+EIFPI+IKGSAGSLV ++   G+WI++ TF+F+M W+  G F +F  +C 
Sbjct:   381 MGGIPWVIMSEIFPIDIKGSAGSLVTVVSWVGSWIISFTFNFLMNWNPAGTFYVFATVCG 440

Query:    61 VAVLFVAFLVPETKGRTLEEIQISI 85
               V+FVA LVPETKGRTLEEIQ SI
Sbjct:   441 ATVIFVAKLVPETKGRTLEEIQYSI 465

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096219 AT3G05150 [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 7.2e-21, P = 7.2e-21
 Identities = 45/82 (54%), Positives = 65/82 (79%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             M  +P VIM+EIFPIN+KG+AG LV +++   +W+V+ TF+F+M WS  G F ++  +C+
Sbjct:   385 MGAIPWVIMSEIFPINLKGTAGGLVTVVNWLSSWLVSFTFNFLMIWSPHGTFYVYGGVCV 444

Query:    61 VAVLFVAFLVPETKGRTLEEIQ 82
             +A++F+A LVPETKGRTLEEIQ
Sbjct:   445 LAIIFIAKLVPETKGRTLEEIQ 466

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2036084 ERD6 "EARLY RESPONSE TO DEHYDRATION 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 3.1e-20, P = 3.1e-20
 Identities = 46/82 (56%), Positives = 64/82 (78%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             M GLP +IMAEIFP+N+K SAG+LV + +    WI+T TF+FM+EW+ +G F IF ++  
Sbjct:   407 MGGLPWIIMAEIFPMNVKVSAGTLVTVTNWLFGWIITYTFNFMLEWNASGMFLIFSMVSA 466

Query:    61 VAVLFVAFLVPETKGRTLEEIQ 82
              +++F+ FLVPETKGR+LEEIQ
Sbjct:   467 SSIVFIYFLVPETKGRSLEEIQ 488

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:2144975 AT5G18840 "AT5G18840" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 9.9e-20, P = 9.9e-20
 Identities = 46/87 (52%), Positives = 62/87 (71%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             M  +P VIM+EIFPIN+KG AGSLV+L++  G W V+ TF+F+M WS  G F ++     
Sbjct:   394 MGPVPWVIMSEIFPINVKGIAGSLVVLVNWSGAWAVSYTFNFLMSWSSPGTFYLYSAFAA 453

Query:    61 VAVLFVAFLVPETKGRTLEEIQISITK 87
               ++FVA +VPETKG+TLEEIQ  I +
Sbjct:   454 ATIIFVAKMVPETKGKTLEEIQACIRR 480

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 45/87 (51%), Positives = 66/87 (75%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             + GLP VIM+EIFP+N+K +AGSLV + +   NWI+  +F+FM++WS +G + IF  + +
Sbjct:   374 LGGLPWVIMSEIFPVNVKITAGSLVTMSNWFFNWIIIYSFNFMIQWSASGTYFIFSGVSL 433

Query:    61 VAVLFVAFLVPETKGRTLEEIQISITK 87
             V ++F+  LVPETKGRTLEEIQ S+ +
Sbjct:   434 VTIVFIWTLVPETKGRTLEEIQTSLVR 460

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 46/86 (53%), Positives = 62/86 (72%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             + GLP +IM+EIFPINIK SAGS+V L      W V+  F+FM EWS  G F IF ++  
Sbjct:   370 IGGLPWIIMSEIFPINIKVSAGSIVALTSWTTGWFVSYGFNFMFEWSAQGTFYIFAMVGG 429

Query:    61 VAVLFVAFLVPETKGRTLEEIQISIT 86
             +++LF+  LVPETKG++LEE+Q S+T
Sbjct:   430 LSLLFIWMLVPETKGQSLEELQASLT 455

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2092379 AT3G20460 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 2.7e-18, P = 2.7e-18
 Identities = 44/87 (50%), Positives = 64/87 (73%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             + G+P V+++E+ PINIKGSAG+L  L     NW V+ TF+F+ +WS +G F I+ +I  
Sbjct:   402 IGGIPWVMISEMTPINIKGSAGTLCNLTSWSSNWFVSYTFNFLFQWSSSGVFFIYTMISG 461

Query:    61 VAVLFVAFLVPETKGRTLEEIQISITK 87
             V +LFV  +VPET+GR+LEEIQ +IT+
Sbjct:   462 VGILFVMKMVPETRGRSLEEIQAAITR 488

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2066400 AT2G48020 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 5.0e-18, P = 5.0e-18
 Identities = 43/82 (52%), Positives = 59/82 (71%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             M  +P V+M+EIFPINIKG AG +  L++  G W V+ TF+F+M WS  G F I+  I  
Sbjct:   377 MGAMPWVVMSEIFPINIKGVAGGMATLVNWFGAWAVSYTFNFLMSWSSYGTFLIYAAINA 436

Query:    61 VAVLFVAFLVPETKGRTLEEIQ 82
             +A++FV  +VPETKG+TLE+IQ
Sbjct:   437 LAIVFVIAIVPETKGKTLEQIQ 458

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 5.1e-18, P = 5.1e-18
 Identities = 45/86 (52%), Positives = 60/86 (69%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             + GLP VIM+EIFPINIK SAG++V L      W V+  F+FM EWS  G F IF  +  
Sbjct:   379 IGGLPWVIMSEIFPINIKVSAGTIVALTSWTSGWFVSYAFNFMFEWSAQGTFYIFAAVGG 438

Query:    61 VAVLFVAFLVPETKGRTLEEIQISIT 86
             ++ +F+  LVPETKG++LEE+Q S+T
Sbjct:   439 MSFIFIWMLVPETKGQSLEELQASLT 464

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 223 (83.6 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 48/85 (56%), Positives = 61/85 (71%)

Query:     1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICI 60
             + GLP VIM+EIFPINIK +AGS+V L+    + IVT  F+F+ EWS  G F IF  I  
Sbjct:   380 LGGLPWVIMSEIFPINIKVTAGSIVTLVSFSSSSIVTYAFNFLFEWSTQGTFFIFAGIGG 439

Query:    61 VAVLFVAFLVPETKGRTLEEIQISI 85
              A+LF+  LVPETKG +LEEIQ+S+
Sbjct:   440 AALLFIWLLVPETKGLSLEEIQVSL 464

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	87
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	4e-13
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	1e-12
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	5e-11
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	0.002

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 62.4 bits (152), Expect = 4e-13
 Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)

Query: 2   AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFW-VICI 60
             +P VI++EIFP++++    S+ +  +   N+IV   F  M+E    G   IF+  + +
Sbjct: 401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNV 460

Query: 61  VAVLFVAFLVPETKGRTLEEI 81
           + ++FV F +PETKGRTLEEI
Sbjct: 461 LGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 60.9 bits (148), Expect = 1e-12
 Identities = 28/83 (33%), Positives = 48/83 (57%), Gaps = 7/83 (8%)

Query: 7   VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTG-------AFSIFWVIC 59
           V+++EIFP  I+G A ++ +      N+ V+ TF  M + S          ++ I+  + 
Sbjct: 387 VLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 446

Query: 60  IVAVLFVAFLVPETKGRTLEEIQ 82
           ++A LF+   VPETKG+TLEE++
Sbjct: 447 VLAALFMWKFVPETKGKTLEEME 469

Length = 479

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 56.1 bits (136), Expect = 5e-11
 Identities = 27/81 (33%), Positives = 46/81 (56%)

Query: 2   AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIV 61
             +P VI++E+FP+ ++  A ++    +   N+++   F  +        F +F  + ++
Sbjct: 366 GPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVL 425

Query: 62  AVLFVAFLVPETKGRTLEEIQ 82
            +LFV F VPETKGRTLEEI 
Sbjct: 426 FILFVFFFVPETKGRTLEEID 446

Length = 449

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 7   VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTG-----------AFSIF 55
           ++  E+FP   + +A  +       G  I    F ++ +                   IF
Sbjct: 415 IVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474

Query: 56  WVICIVAVLFVAFLVPETKGRTLEEI 81
            +   + +LF   L+PETKG++LEE+
Sbjct: 475 ALFMFLGILF-TLLIPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG0569	485	consensus Permease of the major facilitator superf	99.75
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.61
KOG0254	513	consensus Predicted transporter (major facilitator	99.58
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.53
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.47
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	99.26
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	99.22
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.11
TIGR00898	505	2A0119 cation transport protein.	99.02
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.02
PRK10489	417	enterobactin exporter EntS; Provisional	98.84
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	98.67
PRK10642	490	proline/glycine betaine transporter; Provisional	98.67
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.55
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.55
TIGR00893	399	2A0114 d-galactonate transporter.	98.52
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	98.46
PRK03545	390	putative arabinose transporter; Provisional	98.45
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.44
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.43
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.42
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.4
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.4
PRK15403	413	multidrug efflux system protein MdtM; Provisional	98.39
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.37
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.37
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.33
PRK11663	434	regulatory protein UhpC; Provisional	98.32
TIGR00895	398	2A0115 benzoate transport.	98.3
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.29
PRK10054	395	putative transporter; Provisional	98.26
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.25
PRK11663	434	regulatory protein UhpC; Provisional	98.23
PRK10091	382	MFS transport protein AraJ; Provisional	98.23
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.22
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.22
TIGR00901	356	2A0125 AmpG-related permease.	98.21
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.19
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.18
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	98.16
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.16
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.14
PRK09952	438	shikimate transporter; Provisional	98.13
PRK09874	408	drug efflux system protein MdtG; Provisional	98.12
TIGR00900	365	2A0121 H+ Antiporter protein.	98.11
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.1
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.1
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	98.09
PRK12307	426	putative sialic acid transporter; Provisional	98.07
TIGR00893	399	2A0114 d-galactonate transporter.	98.04
PLN00028	476	nitrate transmembrane transporter; Provisional	98.01
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.99
PRK05122	399	major facilitator superfamily transporter; Provisi	97.98
KOG2532	466	consensus Permease of the major facilitator superf	97.97
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.97
TIGR00891	405	2A0112 putative sialic acid transporter.	97.97
PRK10504	471	putative transporter; Provisional	97.96
TIGR00898	505	2A0119 cation transport protein.	97.94
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.91
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.91
PRK12307	426	putative sialic acid transporter; Provisional	97.91
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.88
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.87
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.86
PRK15075	434	citrate-proton symporter; Provisional	97.85
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.84
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.82
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	97.82
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	97.82
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.82
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.81
PRK09705	393	cynX putative cyanate transporter; Provisional	97.8
PRK12382	392	putative transporter; Provisional	97.79
PRK11010	491	ampG muropeptide transporter; Validated	97.78
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.77
PRK10642	490	proline/glycine betaine transporter; Provisional	97.75
PRK11043	401	putative transporter; Provisional	97.75
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.75
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.71
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.7
PRK11902	402	ampG muropeptide transporter; Reviewed	97.69
PRK15075	434	citrate-proton symporter; Provisional	97.67
PRK03893	496	putative sialic acid transporter; Provisional	97.65
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.57
PRK03699	394	putative transporter; Provisional	97.56
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.56
PRK09528	420	lacY galactoside permease; Reviewed	97.56
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.56
KOG0569	485	consensus Permease of the major facilitator superf	97.55
TIGR00805	633	oat sodium-independent organic anion transporter.	97.55
PRK09952	438	shikimate transporter; Provisional	97.54
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.52
PRK03893	496	putative sialic acid transporter; Provisional	97.5
PRK15011	393	sugar efflux transporter B; Provisional	97.5
PRK10489	417	enterobactin exporter EntS; Provisional	97.48
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.48
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.47
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	97.44
PRK03545	390	putative arabinose transporter; Provisional	97.42
KOG1330	493	consensus Sugar transporter/spinster transmembrane	97.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.4
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	97.39
PRK15011	393	sugar efflux transporter B; Provisional	97.37
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.35
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.32
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	97.31
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.27
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.18
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.18
PRK09584	500	tppB putative tripeptide transporter permease; Rev	97.16
KOG2816	463	consensus Predicted transporter ADD1 (major facili	97.11
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.09
KOG0254	513	consensus Predicted transporter (major facilitator	97.08
PRK09705	393	cynX putative cyanate transporter; Provisional	97.03
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.03
KOG2533	495	consensus Permease of the major facilitator superf	97.03
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.02
PRK09874	408	drug efflux system protein MdtG; Provisional	97.01
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.0
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.0
PRK12382	392	putative transporter; Provisional	96.97
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.95
PRK05122	399	major facilitator superfamily transporter; Provisi	96.93
KOG3764	464	consensus Vesicular amine transporter [Intracellul	96.92
KOG2615	451	consensus Permease of the major facilitator superf	96.91
PTZ00207	591	hypothetical protein; Provisional	96.85
TIGR00891	405	2A0112 putative sialic acid transporter.	96.83
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	96.78
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.78
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.7
PRK03633	381	putative MFS family transporter protein; Provision	96.68
PRK11646	400	multidrug resistance protein MdtH; Provisional	96.67
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.63
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.63
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.58
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.52
PRK11010	491	ampG muropeptide transporter; Validated	96.42
PRK10054	395	putative transporter; Provisional	96.4
PRK10504	471	putative transporter; Provisional	96.39
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.35
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	96.02
TIGR00788	468	fbt folate/biopterin transporter. The only functio	96.01
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.0
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.96
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	95.96
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.87
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	95.87
PRK03633	381	putative MFS family transporter protein; Provision	95.83
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.83
PF13347	428	MFS_2: MFS/sugar transport protein	95.82
TIGR00895	398	2A0115 benzoate transport.	95.81
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	95.8
PRK11462	460	putative transporter; Provisional	95.68
PRK09584	500	tppB putative tripeptide transporter permease; Rev	95.65
TIGR00900	365	2A0121 H+ Antiporter protein.	95.63
PRK03699	394	putative transporter; Provisional	95.59
PRK09528	420	lacY galactoside permease; Reviewed	95.47
PRK09669	444	putative symporter YagG; Provisional	95.42
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.31
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	95.18
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.17
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.04
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	94.84
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	94.8
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	94.77
PLN00028	476	nitrate transmembrane transporter; Provisional	94.76
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	94.69
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	94.68
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	94.56
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	94.44
COG2270	438	Permeases of the major facilitator superfamily [Ge	94.36
PRK09669	444	putative symporter YagG; Provisional	94.23
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	94.23
PRK11902	402	ampG muropeptide transporter; Reviewed	93.81
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	93.79
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	93.24
TIGR00788	468	fbt folate/biopterin transporter. The only functio	93.17
PRK10133	438	L-fucose transporter; Provisional	93.1
KOG3762	618	consensus Predicted transporter [General function	92.96
PRK15462	493	dipeptide/tripeptide permease D; Provisional	92.68
PRK10091	382	MFS transport protein AraJ; Provisional	92.66
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	92.61
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	92.53
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	92.4
PRK10207	489	dipeptide/tripeptide permease B; Provisional	92.08
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	91.93
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	91.83
PRK10473	392	multidrug efflux system protein MdtL; Provisional	91.41
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	91.2
PRK11043	401	putative transporter; Provisional	90.41
COG2211	467	MelB Na+/melibiose symporter and related transport	90.29
PRK11195	393	lysophospholipid transporter LplT; Provisional	90.26
PRK09848	448	glucuronide transporter; Provisional	90.25
PRK10429	473	melibiose:sodium symporter; Provisional	89.91
KOG2325	488	consensus Predicted transporter/transmembrane prot	89.61
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	88.75
PRK10213	394	nepI ribonucleoside transporter; Reviewed	88.71
PTZ00207	591	hypothetical protein; Provisional	86.25
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	86.01
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	85.48
PRK11652	394	emrD multidrug resistance protein D; Provisional	85.43
PRK15403	413	multidrug efflux system protein MdtM; Provisional	84.99
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	84.7
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	83.71
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	82.83
KOG2563	480	consensus Permease of the major facilitator superf	82.79
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	82.58
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	82.03
PRK10429	473	melibiose:sodium symporter; Provisional	81.45
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	81.16
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	80.36

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.75  E-value=1.6e-17  Score=108.46  Aligned_cols=86  Identities=27%  Similarity=0.358  Sum_probs=80.8

Q ss_pred             CCccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 047378            1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEE   80 (87)
Q Consensus         1 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~   80 (87)
                      .||++|.+.+|++|++.|+.++++...++|+.+++..+.++.+.+..+...|+++.+.+++..++.++++||||||+..|
T Consensus       385 ~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~e  464 (485)
T KOG0569|consen  385 PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYE  464 (485)
T ss_pred             CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHH
Confidence            48999999999999999999999999999999999999999999955559999999999999999999999999999999


Q ss_pred             HHHHhh
Q 047378           81 IQISIT   86 (87)
Q Consensus        81 ~~~~~~   86 (87)
                      +.+.++
T Consensus       465 I~~~~~  470 (485)
T KOG0569|consen  465 IIEELE  470 (485)
T ss_pred             HHHHHH
Confidence            987665

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.61  E-value=3.5e-17  Score=105.30  Aligned_cols=85  Identities=35%  Similarity=0.669  Sum_probs=77.8

Q ss_pred             CCccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 047378            1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLE   79 (87)
Q Consensus         1 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~   79 (87)
                      ++++.+.+.+|+||++.|+++.|+...++++++++.+.+.+.+.+ .+....+.++++++++..++.++++||||+++++
T Consensus       366 ~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~  445 (451)
T PF00083_consen  366 WGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLE  445 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHH
Confidence            467888999999999999999999999999999999999999887 4558889999999999999999999999999999


Q ss_pred             HHHHHh
Q 047378           80 EIQISI   85 (87)
Q Consensus        80 ~~~~~~   85 (87)
                      |+|+++
T Consensus       446 ei~~~f  451 (451)
T PF00083_consen  446 EIQEMF  451 (451)
T ss_pred             HHHhhC
Confidence            999864

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=99.58  E-value=2e-14  Score=94.58  Aligned_cols=86  Identities=37%  Similarity=0.646  Sum_probs=76.9

Q ss_pred             CCccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHH-HHHhhcccCCCCCH
Q 047378            1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSR-TGAFSIFWVICIVAVL-FVAFLVPETKGRTL   78 (87)
Q Consensus         1 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~pet~~~~~   78 (87)
                      ++|++|.+.+|+||.+.|+++.+++..++|..+++....++.+..... ...|..++.++.+... +.++++||||+++.
T Consensus       412 ~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sl  491 (513)
T KOG0254|consen  412 WGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTL  491 (513)
T ss_pred             cccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcH
Confidence            589999999999999999999999999999999999999988887543 7788888888888888 88899999999999


Q ss_pred             HHHHHHhh
Q 047378           79 EEIQISIT   86 (87)
Q Consensus        79 ~~~~~~~~   86 (87)
                      +|+++.++
T Consensus       492 eei~~~~~  499 (513)
T KOG0254|consen  492 EEINELFE  499 (513)
T ss_pred             HHHHHHHH
Confidence            99988664

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.53  E-value=4.5e-14  Score=92.53  Aligned_cols=81  Identities=25%  Similarity=0.436  Sum_probs=69.1

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------hchHHHHHHHHHHHHHHHHHHhhc
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W----------SRTGAFSIFWVICIVAVLFVAFLV   70 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~   70 (87)
                      +++.|.+.+|++|++.|++++|+....+++++++++.+.+.+.+ .          +....+++++++.+++.++. +++
T Consensus       410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~-~~l  488 (502)
T TIGR00887       410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT-LLI  488 (502)
T ss_pred             CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh-eEe
Confidence            46678899999999999999999999999999999999999887 2          12457888888888776654 667


Q ss_pred             ccCCCCCHHHHHH
Q 047378           71 PETKGRTLEEIQI   83 (87)
Q Consensus        71 pet~~~~~~~~~~   83 (87)
                      |||+++++||+|+
T Consensus       489 pEt~~~~leei~~  501 (502)
T TIGR00887       489 PETKGKSLEELSG  501 (502)
T ss_pred             ccCCCCCHHhhhC
Confidence            9999999999875

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.47  E-value=7.6e-13  Score=85.77  Aligned_cols=85  Identities=32%  Similarity=0.489  Sum_probs=74.2

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM------E-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~------~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      +|+.+.+++|.+|++.|++++|+....+++++++++.++|.+.      + .++...|+++++++++..++.+++.||+|
T Consensus       382 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        382 GPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             cchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence            4677899999999999999999999999999999998888765      2 55667888888888888888888889999


Q ss_pred             CCCHHHHHHHhh
Q 047378           75 GRTLEEIQISIT   86 (87)
Q Consensus        75 ~~~~~~~~~~~~   86 (87)
                      +++.+|+++.++
T Consensus       462 ~~~~~~~~~~~~  473 (479)
T PRK10077        462 GKTLEEMEALWE  473 (479)
T ss_pred             CCCHHHHHHHHh
Confidence            999999988764

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=99.26  E-value=5.6e-12  Score=82.12  Aligned_cols=80  Identities=26%  Similarity=0.480  Sum_probs=68.0

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhchHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME------WSRTGAFSIFWVICIVAVLFVAFLVPETKGR   76 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   76 (87)
                      ..++++.+|.||+++|++..|++.+++..+++++.+.+.++.+      .+...++++++.++++..++. +++|||+++
T Consensus       425 ~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~  503 (538)
T KOG0252|consen  425 ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGK  503 (538)
T ss_pred             ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeeccccc
Confidence            3467899999999999999999999999999999999998887      245567888888888766665 447899999


Q ss_pred             CHHHHHH
Q 047378           77 TLEEIQI   83 (87)
Q Consensus        77 ~~~~~~~   83 (87)
                      +++|+++
T Consensus       504 ~leei~~  510 (538)
T KOG0252|consen  504 SLEEISN  510 (538)
T ss_pred             CHHHhcC
Confidence            9999854

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=99.22  E-value=9.9e-12  Score=79.68  Aligned_cols=75  Identities=21%  Similarity=0.312  Sum_probs=64.7

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTL   78 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   78 (87)
                      ...|+|++|+||+++|++|.|.++.++++++++.|++. .+.......+..+++.+.+++.+..-++.-|||||+.
T Consensus       453 qvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  453 QVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             eEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            35789999999999999999999999999999999998 3333555567888999999999988887789999874

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.11  E-value=4.1e-10  Score=77.40  Aligned_cols=74  Identities=15%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTL   78 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   78 (87)
                      ..+++++|++|++.|++++|+....++++++++|.+.+.+.......++++.+++.+++.++.. ++|||+++.+
T Consensus       668 ~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~-~LPET~~~~l  741 (742)
T TIGR01299       668 ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLAL-KLPDTRGQVL  741 (742)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hCCCCccccc
Confidence            4568899999999999999999999999999999999888775556677777777777666655 4699998753

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00898 2A0119 cation transport protein

Probab=99.02  E-value=9.8e-10  Score=71.95  Aligned_cols=75  Identities=20%  Similarity=0.281  Sum_probs=62.2

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEE   80 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~   80 (87)
                      ..+.+.+|++|++.|++++|+.....++++.++|.+.. +...+....++++++..++..+.. +++|||++++++|
T Consensus       430 ~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~  504 (505)
T TIGR00898       430 MVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE  504 (505)
T ss_pred             HHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence            45688999999999999999999999999999999988 444666677888888887776665 4579999987654

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.02  E-value=1.5e-09  Score=69.55  Aligned_cols=79  Identities=38%  Similarity=0.631  Sum_probs=69.3

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEE   80 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~   80 (87)
                      ++..+.+.+|.+|++.|++++++......+++++++.+.+.+.+ .++...|+++++++++..+..+++.||+++++.++
T Consensus       401 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~  480 (481)
T TIGR00879       401 GPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE  480 (481)
T ss_pred             cCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence            35667888999999999999999999999999999999998887 67778888999998988888888889999887654

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10489 enterobactin exporter EntS; Provisional

Probab=98.84  E-value=1e-08  Score=65.83  Aligned_cols=81  Identities=9%  Similarity=0.025  Sum_probs=70.1

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQI   83 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~~   83 (87)
                      ...+..|..|.+.|+++.|+......++..+++.+.+.+.+ .+....+...+.+.++..++.+...||+|+++.+|+++
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (417)
T PRK10489        333 QYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEV  412 (417)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence            35678999999999999999999999999999999999998 67777788888777777777777789999999999876


Q ss_pred             Hh
Q 047378           84 SI   85 (87)
Q Consensus        84 ~~   85 (87)
                      +-
T Consensus       413 ~~  414 (417)
T PRK10489        413 DA  414 (417)
T ss_pred             CC
Confidence            54

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=98.67  E-value=1.8e-07  Score=50.95  Aligned_cols=71  Identities=21%  Similarity=0.314  Sum_probs=59.6

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      +..+.+..|.+|.+.|+++.++......++..+++.+.+.+.+ .++...+++.+...++..+..++..||+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            3456788999999999999999999999999999999998887 5666788888888888777777766764

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.67  E-value=2.6e-07  Score=60.82  Aligned_cols=73  Identities=15%  Similarity=0.157  Sum_probs=53.1

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKGRTL   78 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   78 (87)
                      ...+.+|++|++.|++++|+.+.....++.++|.+.+++.+ .+ +...++...+..++..+.. +++||+++...
T Consensus       363 ~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~-~~~pes~~~~~  437 (490)
T PRK10642        363 MASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG-VTMKETANRPL  437 (490)
T ss_pred             HHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH-HHhccccCCCC
Confidence            34678899999999999999888888889999999998877 33 3444444455555544444 45699876543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.55  E-value=7.6e-07  Score=58.93  Aligned_cols=78  Identities=18%  Similarity=0.221  Sum_probs=60.9

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEEIQ   82 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~~~   82 (87)
                      .+.+.+|++|+..|+.+.+.......+++.++|++............+.+++....+.......++|||+++.+.+..
T Consensus       427 ~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~  504 (521)
T KOG0255|consen  427 IFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTL  504 (521)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhH
Confidence            368899999999999999999999999999999988665553322233335767777777776789999998877643

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.55  E-value=7.8e-07  Score=56.97  Aligned_cols=69  Identities=9%  Similarity=-0.072  Sum_probs=60.5

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+|.+|.+.|++++++......++..+++.+.+.+.+ .+|+..|++.+.+.++..++.++.+||.+
T Consensus       100 ~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p  169 (368)
T TIGR00903       100 FAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALP  169 (368)
T ss_pred             HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4557899999999999999999999999999999888887 78888898888988888888788888864

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.52  E-value=5.6e-07  Score=56.33  Aligned_cols=73  Identities=21%  Similarity=0.170  Sum_probs=60.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      +....+++|.+|.+.|+++.++......++..+++.+...+.+ .++++.|.+.++..++..+...+..||++.
T Consensus       101 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893       101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            3456789999999999999999999999999999999888777 778888888888877777766666666543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=98.46  E-value=2.6e-06  Score=56.32  Aligned_cols=70  Identities=16%  Similarity=0.212  Sum_probs=49.3

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------hhchHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME------------------------WSRTGAFSIFWVI   58 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~------------------------~~~~~~~~~~~~~   58 (87)
                      |....|++|.+|++.|++++++......++..+++.+...+..                        .+|+..+ ..+.+
T Consensus       134 ~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~-~~~~i  212 (502)
T TIGR00887       134 PLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILI-GFGAV  212 (502)
T ss_pred             HHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHH-HHHHH
Confidence            4567899999999999999999998888888777776654332                        1355555 44444


Q ss_pred             HHHHHHHHHhhcccC
Q 047378           59 CIVAVLFVAFLVPET   73 (87)
Q Consensus        59 ~~~~~~~~~~~~pet   73 (87)
                      ..+...+..+++||+
T Consensus       213 p~~i~~~~~~~lpES  227 (502)
T TIGR00887       213 PALLALYFRLTIPET  227 (502)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            444444445678997

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK03545 putative arabinose transporter; Provisional

Probab=98.45  E-value=2e-06  Score=54.89  Aligned_cols=71  Identities=13%  Similarity=0.047  Sum_probs=59.3

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+++|.+|.+.|++++|+......++..+++.+...+.+ .++++.|++.+.+.++..+..+...||.+
T Consensus       117 ~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        117 ITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            345678999999999999999999999999999999888877 68888999988888877776666667643

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.44  E-value=2e-06  Score=55.65  Aligned_cols=73  Identities=8%  Similarity=0.046  Sum_probs=59.6

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-------WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      |....+++|.+|.+.|++++++......++..+++.+...+.+       .+|++.|.+.++..++..++.++++||+++
T Consensus       115 ~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~  194 (412)
T TIGR02332       115 PGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD  194 (412)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence            3445678999999999999999998888999999988887763       378888988888887777777777888763

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.43  E-value=1.6e-06  Score=54.71  Aligned_cols=72  Identities=14%  Similarity=0.212  Sum_probs=60.3

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGR   76 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   76 (87)
                      ...+++|.+|.+.|++..++......++..+++.+.+.+.+ .+++..+++.++..++..+..++..||++.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (385)
T TIGR00710       114 SQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY  186 (385)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence            45788999999999999999999999999999999988877 6788888888888887777766667876543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.42  E-value=2.1e-06  Score=55.69  Aligned_cols=68  Identities=19%  Similarity=0.266  Sum_probs=63.6

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      +...+.+++-|.+.|++++++......+...++.-+..++.+ .+|+..|+..+.++++..+..+..+|
T Consensus       121 i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         121 IAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            456788999999999999999999999999999999999999 89999999999999999999999899

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.40  E-value=3.1e-07  Score=59.79  Aligned_cols=73  Identities=21%  Similarity=0.220  Sum_probs=61.3

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      |....+++|.+|.+.|+++.++......++..+++.+.+.+.+ .++++.|++.+.+.++..++..+..||.+.
T Consensus       109 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       109 PLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            3456789999999999999999999999999999999988887 788888888888887777776666777544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.40  E-value=2.8e-06  Score=54.63  Aligned_cols=73  Identities=14%  Similarity=0.165  Sum_probs=59.6

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      |....+++|.+|.+.|+++.++......++..+++.+.+.+.+ .++++.|++.+.+.++..++.....||+++
T Consensus       127 ~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~  200 (394)
T PRK10213        127 AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG  200 (394)
T ss_pred             HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence            3455778999999999999999999999999999999999888 788888888887777666555555687543

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=98.39  E-value=3.1e-06  Score=54.76  Aligned_cols=72  Identities=17%  Similarity=0.097  Sum_probs=60.3

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ..+.++.|.+|.+.|++.+++......++..+++.+...+.+ .+|++.|++.++..++..++..+.+||++.
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        124 VGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            345778999999999999999999999999999988888777 688889998888888877766666788753

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.37  E-value=1.9e-06  Score=54.99  Aligned_cols=72  Identities=15%  Similarity=0.175  Sum_probs=58.9

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ..+.+++|.+|.+.|+++.++......++..+++.+...+.+ .+++..+++.+.+.++..++.....||++.
T Consensus       111 ~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~  183 (392)
T PRK10473        111 VAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRP  183 (392)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            356788999999999999999998888888888888877766 677788888888888877776676787653

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.37  E-value=3e-06  Score=53.57  Aligned_cols=71  Identities=21%  Similarity=0.336  Sum_probs=59.4

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+++|.+|.+.|++++++......++..+++.+...+.+ .++++.|++.+.+.++..++..+..||++
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102         99 VINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            345788999999999999999999999999999999888887 67788888888888877777666677753

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.33  E-value=2e-06  Score=56.13  Aligned_cols=71  Identities=13%  Similarity=0.149  Sum_probs=58.9

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      |....+++|.+|.+.|++.+++......++..+++.+...+.+ . +++..|.+.+++.++..++.+...+|.
T Consensus       150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~  222 (465)
T TIGR00894       150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADD  222 (465)
T ss_pred             hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence            4456789999999999999999999999999999999988887 4 788889888888877766666555543

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.32  E-value=2.5e-06  Score=55.40  Aligned_cols=72  Identities=19%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRT   77 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   77 (87)
                      ..+.+|.+|++.|++++|+....+.++..++|...+.+.+ .++...|.+.+++.++..+..+...++.++++
T Consensus       359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~  431 (434)
T PRK11663        359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPRE  431 (434)
T ss_pred             HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchhc
Confidence            3457899999999999999999999999999999999988 77888888888888887776665555555443

>TIGR00895 2A0115 benzoate transport

Probab=98.30  E-value=1.3e-06  Score=55.05  Aligned_cols=72  Identities=14%  Similarity=0.191  Sum_probs=59.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      +....+++|.+|.+.|+++.++......++..+++.+.+.+.+ .+++..+.+.+.+..+...+.....||+.
T Consensus       124 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (398)
T TIGR00895       124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESI  196 (398)
T ss_pred             hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCC
Confidence            4456889999999999999999999999999999999988887 67777787776666666666666678764

>TIGR00889 2A0110 nucleoside transporter

Probab=98.29  E-value=3.6e-06  Score=54.64  Aligned_cols=73  Identities=15%  Similarity=0.180  Sum_probs=59.4

Q ss_pred             cchhhhcccCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-hh------chHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVI-LLHNCGNWIVTCTFHFMME-WS------RTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~-~~~~~~~~~~~~~~~~l~~-~~------~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ....+++|.+|++.|++++|+.. ....++..++|.+.+.+.+ .+      +...|.+.+++.++..++.+++.+|+++
T Consensus       328 ~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~  407 (418)
T TIGR00889       328 SGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHN  407 (418)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence            34467899999999999999997 4567899999999999887 32      4567888888888888888888898865


Q ss_pred             C
Q 047378           76 R   76 (87)
Q Consensus        76 ~   76 (87)
                      .
T Consensus       408 ~  408 (418)
T TIGR00889       408 A  408 (418)
T ss_pred             C
Confidence            3

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10054 putative transporter; Provisional

Probab=98.26  E-value=7.8e-06  Score=52.62  Aligned_cols=71  Identities=14%  Similarity=0.062  Sum_probs=57.3

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+.+|.+|.+.|+++.|+.+....++..+++.+...+...+++..|.+.++..++..+...+..||.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~  186 (395)
T PRK10054        116 VLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSE  186 (395)
T ss_pred             HHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence            34566789999999999999999999999999999998877767788888887777776666555566553

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.25  E-value=7.2e-06  Score=52.61  Aligned_cols=73  Identities=14%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      +..+.++.|.+|.+.|.++.++......++..+++.+...+.+ .++++.+++.+++.++..+..++..||+++
T Consensus       120 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        120 AVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            3456778999999999999999888888888888888888777 678888988888888877766666788754

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.23  E-value=9.5e-06  Score=52.74  Aligned_cols=70  Identities=14%  Similarity=0.201  Sum_probs=56.9

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ....+++|.+|.+.|++++|+......+++.+++.+...+.+ .++++.|++.+++.++..++..+.++|+
T Consensus       131 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        131 VCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            445788999999999999999999999999999999888887 7788888888777766655555555654

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.23  E-value=8.8e-06  Score=51.96  Aligned_cols=71  Identities=14%  Similarity=0.174  Sum_probs=57.5

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ...+++|.+|.+.|++.+++......++..+++.+...+.+ .++++.|.+.+++.++..+..++..||.+.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~  183 (382)
T PRK10091        112 GAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD  183 (382)
T ss_pred             HHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            34568899999999999999988888888888888887777 678888988888877777666666788543

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.22  E-value=4.1e-06  Score=55.38  Aligned_cols=69  Identities=17%  Similarity=0.128  Sum_probs=57.4

Q ss_pred             hhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            7 VIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         7 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ..+.+.+ |.+.|+++.|+......++..++|.+...+.+ .+|++.|++...+.++..++..+.+||.++
T Consensus       117 ~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        117 AGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            3444555 78999999999999999999999999999888 788999999888888877777777787543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.22  E-value=3.4e-06  Score=54.04  Aligned_cols=63  Identities=8%  Similarity=0.119  Sum_probs=52.6

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVA   67 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   67 (87)
                      ..+.+.+|.+|++.|+++.|+....+++++.+++...+.+.. +....|.++++..++..+...
T Consensus       300 ~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       300 IIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS-SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             HHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999998887663 555678888888887777654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.21  E-value=9.8e-06  Score=51.06  Aligned_cols=70  Identities=14%  Similarity=0.067  Sum_probs=55.2

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--------chHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--------RTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ..++++|.+|.+.|+++.++......++..+++.+...+.. .+        |+..|++.++..++..+...+..||.+
T Consensus       104 ~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~  182 (356)
T TIGR00901       104 LDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQ  182 (356)
T ss_pred             HHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            35678999999999999999998889999999988887776 55        777888877776665555554457753

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.19  E-value=3.4e-06  Score=52.43  Aligned_cols=70  Identities=19%  Similarity=0.323  Sum_probs=57.8

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      +....+++|.+|.+.|++..++......++..+++.+...+.+ .+++..|++.++..++..++...+.++
T Consensus       104 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~  174 (352)
T PF07690_consen  104 PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE  174 (352)
T ss_dssp             HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred             ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence            3456789999999999999999999999999999999998875 678888999999988887764444543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.18  E-value=5.2e-06  Score=53.07  Aligned_cols=71  Identities=15%  Similarity=0.070  Sum_probs=55.2

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+++|.+|.+.|++++++......++..+++.+...+.+ .+++..|++.+++.++..+.....+||+.
T Consensus       123 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  194 (406)
T PRK11551        123 NLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESR  194 (406)
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            345778999999999999999998888888888887766666 56777788777766666666666677763

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=98.16  E-value=2e-05  Score=51.54  Aligned_cols=67  Identities=18%  Similarity=0.333  Sum_probs=53.1

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhc-ccC
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWI-VTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLV-PET   73 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~-pet   73 (87)
                      .+..|.+|++.|+++.|+......+++.+ ++.+.+.+.+ .++...|++.+..++++.+...... +|+
T Consensus       370 ~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~  439 (452)
T PRK11273        370 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  439 (452)
T ss_pred             HHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            45779999999999999999888888765 6889999888 6778888888887777776655433 444

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.16  E-value=1.1e-05  Score=52.37  Aligned_cols=71  Identities=17%  Similarity=0.188  Sum_probs=45.4

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMMEWSRTG-AFSIFWVICIVAVLFVAFLVPETKGRT   77 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~pet~~~~   77 (87)
                      .+.+.+|.||++.|++++|+.+..++. .+...|.+...+...+.+. .+++.++..++..+..++  .++++++
T Consensus       357 ~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~--l~~~~~~  429 (432)
T PRK10406        357 SGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLM--LHRKGKG  429 (432)
T ss_pred             HHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH--hhhcccc
Confidence            457789999999999999999988765 3555666666543344333 444444555554444433  4555554

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.14  E-value=1.7e-05  Score=51.55  Aligned_cols=69  Identities=19%  Similarity=0.149  Sum_probs=54.2

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ...+++|.+|.+.|++++|+......+++.+++.+......  .+|+..|++.+++.++..+..++++||+
T Consensus       139 ~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       139 CGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             HHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            34567899999999999999988888888888877665443  4678888888888888777666667764

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09952 shikimate transporter; Provisional

Probab=98.13  E-value=2.3e-05  Score=51.10  Aligned_cols=69  Identities=9%  Similarity=0.204  Sum_probs=49.8

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-hh--chHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHN-CGNWIVTCTFHFMME-WS--RTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~-~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ..+.+.+|.+|++.|+++.++.+..+. +++.++|.+...+.+ .+  +...+...+++.+++.+.. +.++|+
T Consensus       363 ~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~-~~~~~~  435 (438)
T PRK09952        363 VQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA-LLMKDN  435 (438)
T ss_pred             HHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence            456789999999999999999887765 788999999999887 32  3445555555555554444 445664

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=98.12  E-value=3e-05  Score=49.49  Aligned_cols=69  Identities=16%  Similarity=0.154  Sum_probs=56.7

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ...++.|.+|.+.|+++.++......++..+++.+...+.+ .+++..+++.+++.++..+...+..+|.
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        127 ANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             HHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34567889999999999999988888888999999988877 6788888888888777777666666664

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.11  E-value=2.9e-05  Score=48.41  Aligned_cols=64  Identities=13%  Similarity=0.015  Sum_probs=52.1

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA   67 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~   67 (87)
                      ....+++|.+|.+.|++..|+......++..+++.+...+.+ .+++..+++.++..++..++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  176 (365)
T TIGR00900       112 AYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIV  176 (365)
T ss_pred             HHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999988887 6777777776666555544433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.10  E-value=3.9e-05  Score=50.05  Aligned_cols=71  Identities=23%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--------H-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM--------E-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      |...++++|.+|.+.|++.+++......++..+++.+...+.        . .+|++.|++.++..++..+. .+++||+
T Consensus       139 ~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~-~~~l~~s  217 (479)
T PRK10077        139 MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLML-LYFVPET  217 (479)
T ss_pred             hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHH-HHcCCCC
Confidence            446688999999999999999988777777777665544332        2 46777887776666665444 4567887


Q ss_pred             C
Q 047378           74 K   74 (87)
Q Consensus        74 ~   74 (87)
                      .
T Consensus       218 ~  218 (479)
T PRK10077        218 P  218 (479)
T ss_pred             c
Confidence            4

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.10  E-value=3.2e-05  Score=49.90  Aligned_cols=70  Identities=16%  Similarity=0.227  Sum_probs=57.3

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ....++.|.+|.+.|+++.|+......++..+++.+.+.+.+.++++.|++.+...++..++..+..||.
T Consensus       119 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        119 PRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            3456788999999999999999999999999999999988777777888888777777666555556764

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=98.09  E-value=4.5e-05  Score=53.15  Aligned_cols=70  Identities=13%  Similarity=0.107  Sum_probs=49.5

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------------hchHHHHHHHHHHHHHHHHHHh
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------------SRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------------~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      |+.+++++|.+|.+.|++.+++......++..+++.+...+.. .             +|++.+++ .++..+..++..+
T Consensus       274 p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i-~~lp~ll~ll~~~  352 (742)
T TIGR01299       274 PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIV-CAFPCVFAIGALT  352 (742)
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHH-HHHHHHHHHHHHH
Confidence            4677899999999999999999888888888887776555443 2             23344444 4444454555667


Q ss_pred             hcccC
Q 047378           69 LVPET   73 (87)
Q Consensus        69 ~~pet   73 (87)
                      ++||+
T Consensus       353 ~lPES  357 (742)
T TIGR01299       353 FMPES  357 (742)
T ss_pred             HcCCC
Confidence            78998

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.07  E-value=1.8e-05  Score=50.90  Aligned_cols=71  Identities=13%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhch-HHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRT-GAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      +.+.++.|.+|++.|++++|+......+++.++|.+.+.+.+ .+.. ..+++.+..+........+..||+.
T Consensus       341 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  413 (426)
T PRK12307        341 LVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDRL  413 (426)
T ss_pred             HHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChhh
Confidence            344678999999999999999999999999999999999887 4433 2344444444444444334456643

>TIGR00893 2A0114 d-galactonate transporter

Probab=98.04  E-value=2e-05  Score=49.34  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=54.4

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHH
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVA   67 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~   67 (87)
                      .|..+.+.+|.+|.+.|+++.|+...+..+++.+++.+.+.+.+ .+ ....+.+.+++.+++.+...
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  396 (399)
T TIGR00893       329 GAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL  396 (399)
T ss_pred             hhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence            35667889999999999999999999999999999999999988 55 56677777776666655543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.01  E-value=7.8e-05  Score=49.23  Aligned_cols=65  Identities=18%  Similarity=0.167  Sum_probs=49.1

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME----------WSRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      .+++|.+|.+.|++++|+......+++.+++.+.+.+..          .+|++.|++.+++.++..+..+++.+
T Consensus       146 ~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~  220 (476)
T PLN00028        146 YWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ  220 (476)
T ss_pred             HHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence            468899999999999999987777777777666655432          25788888888888777766655443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.99  E-value=3.5e-05  Score=49.53  Aligned_cols=71  Identities=17%  Similarity=0.202  Sum_probs=51.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTF---HFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~---~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      +....+++|.+|.+.|++++++......++..+++.+.   ..... .++++.|++.+...++ .++..+++||+.
T Consensus       146 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l~~~~  220 (481)
T TIGR00879       146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFLPESP  220 (481)
T ss_pred             hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcCCCCh
Confidence            34567899999999999999999988888888888887   33323 5677777775444444 444445578763

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.98  E-value=4.5e-05  Score=48.78  Aligned_cols=71  Identities=10%  Similarity=0.060  Sum_probs=55.4

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTL   78 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~   78 (87)
                      ....|.+|.+.|+++.|+......++..+++.+.+.+.+ .+++..+.+.+++.+++.+...+ .++.++++.
T Consensus       325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  396 (399)
T PRK05122        325 VEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL-LYRRAPRAV  396 (399)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH-hcccccccC
Confidence            456789999999999999999999998898988888887 67777888877777776666554 455544443

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.97  E-value=0.00012  Score=48.67  Aligned_cols=81  Identities=12%  Similarity=0.163  Sum_probs=65.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccC----CCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPET----KGR   76 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet----~~~   76 (87)
                      |....+.+...|.+.|++..++.++...+++++.-.+.+.+-+  .+|+..|+++++++++..++.+.+..|.    +..
T Consensus       147 pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h~~i  226 (466)
T KOG2532|consen  147 PAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSKHPNI  226 (466)
T ss_pred             hhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcccCCCC
Confidence            3455778899999999999999999999999999888888877  6899999999999999888766655432    344


Q ss_pred             CHHHHHH
Q 047378           77 TLEEIQI   83 (87)
Q Consensus        77 ~~~~~~~   83 (87)
                      +.+|.+.
T Consensus       227 s~~El~~  233 (466)
T KOG2532|consen  227 SEKELKY  233 (466)
T ss_pred             CHHHHHH
Confidence            5555543

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.97  E-value=3.2e-05  Score=49.52  Aligned_cols=66  Identities=12%  Similarity=0.197  Sum_probs=49.1

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h-chHHHHHHHHHHHHHHHHHHhh
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW-S-RTGAFSIFWVICIVAVLFVAFL   69 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~~~~~~~~~~~~~~~   69 (87)
                      ..+.+.+|.+|++.|+++.|+......+++.+++.+.+.+.+. + ....++......++..+..+..
T Consensus       328 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        328 VLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            3457789999999999999999999999999999999998873 3 3334444444444444444443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.97  E-value=9.5e-05  Score=46.87  Aligned_cols=70  Identities=19%  Similarity=0.358  Sum_probs=51.0

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--chHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--RTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+++|.+|.+.|+++.++......++..+++.+...+.+ .+  ++..+.+.+.. .+..++.....||++
T Consensus       120 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~-~~~~~~~~~~~~~~~  192 (405)
T TIGR00891       120 SSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILP-IIFALWLRKNIPEAE  192 (405)
T ss_pred             HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH-HHHHHHHHHhCCCCh
Confidence            345778999999999999999999999999999998888776 33  55666554333 333344445568764

>PRK10504 putative transporter; Provisional

Probab=97.96  E-value=6.5e-05  Score=49.11  Aligned_cols=71  Identities=18%  Similarity=0.166  Sum_probs=58.2

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      |....+++|.+|.+.|+++.++......++..+++.+...+.+ .++++.|.+......+..+......|+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        117 PVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3456778999999999999999998889999999999988888 7778888888777777776666655654

>TIGR00898 2A0119 cation transport protein

Probab=97.94  E-value=0.00016  Score=47.73  Aligned_cols=68  Identities=16%  Similarity=0.225  Sum_probs=50.0

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      +..+.+++|.+|.+.|+++.++......++..+.+.+...+.  .|++.+++.++..++..+.. +++||+
T Consensus       199 ~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~--~wr~~~~~~~i~~~~~~~~~-~~~~es  266 (505)
T TIGR00898       199 VQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP--DWRWLQLAVSLPTFLFFLLS-WFVPES  266 (505)
T ss_pred             HHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHH-HhcCCC
Confidence            456788999999999999999987666677666666554433  36777777777777666555 567886

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.91  E-value=7.6e-06  Score=51.22  Aligned_cols=71  Identities=18%  Similarity=0.189  Sum_probs=55.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTC-TFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      |....+++|.+|.+.|+++.++......++..+++. ....+.. .+++..|++.+++.++..+...+..||+
T Consensus       102 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (379)
T TIGR00881       102 PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDS  174 (379)
T ss_pred             CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCC
Confidence            456678999999999999999999888999999884 5445545 6777788888777777666666666654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.91  E-value=2e-05  Score=51.23  Aligned_cols=69  Identities=17%  Similarity=0.291  Sum_probs=57.9

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGN-WIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ....|.+|.+.|+++.|+......+++ .++|.+.+.+.+ .++...+.+..+..+++.+...+.+||.|+
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR  438 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            357799999999999999988888775 578999999888 677788888888888888888888888763

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.91  E-value=4.1e-05  Score=49.26  Aligned_cols=70  Identities=21%  Similarity=0.331  Sum_probs=49.6

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+++|.+|.+.|+++.++......++..+++.+.+.+.+ .++++.+++... ..+...+.....||++
T Consensus       126 ~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~-~~~~~~~~~~~~p~~~  196 (426)
T PRK12307        126 CASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL-PVLLVIYIRARAPESK  196 (426)
T ss_pred             HHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH-HHHHHHHHHHHCCCCh
Confidence            345678999999999999999998888999999888887777 667777765433 2232233223346653

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.88  E-value=0.00014  Score=46.83  Aligned_cols=71  Identities=13%  Similarity=0.068  Sum_probs=52.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      |...++++|++|.+.|+++.|+.......+..++|.+.+.+.+..+...+.+.+...++. .+..+.+||.+
T Consensus       107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~-~~~~~~l~~~~  177 (393)
T PRK11195        107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLA-ALFNLFIPRLG  177 (393)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            556688999999999999999999888899999999999888754444454444333333 33345567654

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.87  E-value=7.7e-05  Score=49.86  Aligned_cols=59  Identities=20%  Similarity=0.222  Sum_probs=48.6

Q ss_pred             ccchhhhcccCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPIN--IKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIV   61 (87)
Q Consensus         3 ~~~~~~~~E~fp~~--~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~   61 (87)
                      |....+++|.||++  .|+++.++.+...++++.++|.+.+.+.+ .+++..|.+.++..++
T Consensus       119 ~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        119 SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            34457899999986  79999999999999999999999999987 7788888775543333

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.86  E-value=9.2e-05  Score=46.65  Aligned_cols=72  Identities=10%  Similarity=-0.033  Sum_probs=54.1

Q ss_pred             ccchhhhcccCCcchHHHH--HHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            3 GLPSVIMAEIFPINIKGSA--GSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~--~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      |....+..|..|.+.|+.+  .+.......++..+++.+...+.+ .+++..|++.+.+.++..+..++++||.+
T Consensus       106 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T TIGR00899       106 PQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYP  180 (375)
T ss_pred             HHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            3345667788887777755  466666777888899988888877 67888899888887777777666677754

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15075 citrate-proton symporter; Provisional

Probab=97.85  E-value=6.7e-05  Score=48.78  Aligned_cols=74  Identities=16%  Similarity=0.299  Sum_probs=48.0

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhch---HHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMME-WSRT---GAFSIFWVICIVAVLFVAFLVPETKGRT   77 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~---~~~~~~~~~~~~~~~~~~~~~pet~~~~   77 (87)
                      +..+.+.+|.+|.+.|+++.++...+... ++.++|.+.+.+.+ .+..   ..+.+.+.++..   .......+.++..
T Consensus       350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  426 (434)
T PRK15075        350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGL---IATLVLYRRRGAR  426 (434)
T ss_pred             hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---HHHHHhccccchh
Confidence            34557889999999999999998777765 48889999988888 4432   223333333222   2333456655554


Q ss_pred             HH
Q 047378           78 LE   79 (87)
Q Consensus        78 ~~   79 (87)
                      ++
T Consensus       427 ~~  428 (434)
T PRK15075        427 LQ  428 (434)
T ss_pred             hh
Confidence            44

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.84  E-value=0.00011  Score=47.76  Aligned_cols=72  Identities=22%  Similarity=0.267  Sum_probs=46.7

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM---------EWSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      |....+++|.+|.+.|++..++.......+..+++.+...+.         ..+|+..|++-++..++. .+.....||+
T Consensus       143 ~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~  221 (432)
T PRK10406        143 GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDET  221 (432)
T ss_pred             hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence            445688999999999999988876665555555554433332         256777787665555543 3334456776


Q ss_pred             CC
Q 047378           74 KG   75 (87)
Q Consensus        74 ~~   75 (87)
                      +.
T Consensus       222 ~~  223 (432)
T PRK10406        222 SQ  223 (432)
T ss_pred             ch
Confidence            43

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.82  E-value=0.00011  Score=45.42  Aligned_cols=65  Identities=17%  Similarity=0.261  Sum_probs=56.4

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA   67 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~   67 (87)
                      +....+..|..|.+.|++..|+......++..+++.+.+.+.+ .++...+.+.+++.++..++.+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             hhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            4567889999999999999999999999999999999999987 6777888888888877766643

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=97.82  E-value=0.00039  Score=46.28  Aligned_cols=81  Identities=15%  Similarity=0.049  Sum_probs=55.3

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hhchHHHHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-------------------WSRTGAFSIFWVICIVAVLF   65 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~~~~~~~~~~~~~~   65 (87)
                      ....+++.||.+.|+++.|+....+.++..+.+++.|.+..                   .+++...+++....++..++
T Consensus       148 ~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~  227 (462)
T PRK15034        148 SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIA  227 (462)
T ss_pred             HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence            34668999999999999999987777787777777765441                   12445566777777777777


Q ss_pred             HHhhcccCC--CCCHHHHHHHh
Q 047378           66 VAFLVPETK--GRTLEEIQISI   85 (87)
Q Consensus        66 ~~~~~pet~--~~~~~~~~~~~   85 (87)
                      .++..++.+  ..+.++..+.+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~vl  249 (462)
T PRK15034        228 AWSGMNDIASSRASIADQLPVL  249 (462)
T ss_pred             HHHhCCCccccccCHHHHHHHh
Confidence            777665543  33444443333

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=97.82  E-value=0.00026  Score=47.06  Aligned_cols=68  Identities=21%  Similarity=0.199  Sum_probs=55.2

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      +.+.+.+|+++++.|+.+..+ ....+.++.+.+....++.. +|++.+++..+...+..++ ++..||++
T Consensus       191 ~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-~Wr~~~~~~~~~~~~~~~~-~~l~~Es~  258 (521)
T KOG0255|consen  191 VGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-DWRWLFWIISIPSGLFLLL-WFLPPESP  258 (521)
T ss_pred             HhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence            467889999999999999999 88889999988888888775 7777888777777776666 55566863

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.82  E-value=0.00011  Score=48.33  Aligned_cols=68  Identities=16%  Similarity=0.243  Sum_probs=50.7

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-------------hhchHHHHHHHHHHHHHHHHHHhh-cc
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMME-------------WSRTGAFSIFWVICIVAVLFVAFL-VP   71 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~~~~-~p   71 (87)
                      ....|.+|.+.|+++.|+......+ ++.+++.+.+.+.+             .++...|.++++..+++.+...+. ..
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  451 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVAVM  451 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5577999999999999999989886 66899999998887             245666777766666665554433 24


Q ss_pred             cCC
Q 047378           72 ETK   74 (87)
Q Consensus        72 et~   74 (87)
                      |++
T Consensus       452 ~~~  454 (467)
T PRK09556        452 EER  454 (467)
T ss_pred             HHH
Confidence            544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.81  E-value=0.00023  Score=45.53  Aligned_cols=71  Identities=10%  Similarity=0.105  Sum_probs=55.2

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ...+..|.++.+.|+++.++......++..+++.+...+.+ .+++..|++.++..++..+...+..||++.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        117 ARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            34567889999999999999888888888888888888777 678888888877776666655566788643

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.80  E-value=0.00019  Score=46.19  Aligned_cols=73  Identities=4%  Similarity=-0.093  Sum_probs=55.9

Q ss_pred             chhhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378            5 PSVIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKGRT   77 (87)
Q Consensus         5 ~~~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   77 (87)
                      ......+.+ |.+.|++..|+......++..++|.+...+.+ .+ ....+.+.+..+++.........||++++.
T Consensus       313 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (393)
T PRK09705        313 CLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL  388 (393)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence            334455666 57889999999999999999999999999998 44 445566666677776667677789987764

>PRK12382 putative transporter; Provisional

Probab=97.79  E-value=0.00024  Score=45.39  Aligned_cols=65  Identities=8%  Similarity=0.089  Sum_probs=54.6

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL   69 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~   69 (87)
                      ......|.+|.+.|+++.|+......+++.+++.+.+.+.+ .++...+.+.+.+.++..+...+.
T Consensus       323 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        323 LGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            34567889999999999999999999999999999999888 678888888888777777665544

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.78  E-value=0.0002  Score=47.55  Aligned_cols=69  Identities=12%  Similarity=0.237  Sum_probs=56.0

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ..++.+|.+|.+.|+++.++......++..+++.....+.+  .+|+..|++.++..++..+... ..||+.
T Consensus       128 ~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~  198 (491)
T PRK11010        128 FDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATL-LAPEPT  198 (491)
T ss_pred             HHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCc
Confidence            45788999999999999999999999999999988888877  3788888888877776655544 467763

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.77  E-value=0.0002  Score=45.01  Aligned_cols=69  Identities=20%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hchHHH-HHHHHHHHHHHHHHHhhccc
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW-----------SRTGAF-SIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~-~~~~~~~~~~~~~~~~~~pe   72 (87)
                      ...+++|.+|.+.|+++.++......++..+++.+.+.+...           ++++.+ +..+++..+..++.....+|
T Consensus       111 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  190 (366)
T TIGR00886       111 CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD  190 (366)
T ss_pred             HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence            346789999999999999999877777777777776655541           466666 44455555544444444454


Q ss_pred             C
Q 047378           73 T   73 (87)
Q Consensus        73 t   73 (87)
                      +
T Consensus       191 ~  191 (366)
T TIGR00886       191 T  191 (366)
T ss_pred             C
Confidence            3

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.75  E-value=0.00021  Score=47.28  Aligned_cols=70  Identities=21%  Similarity=0.243  Sum_probs=46.8

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM---------EWSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+++|.+|.+.|++..++......++..+++.+...+.         ..+|+..|++.+...++ .++....+||+.
T Consensus       138 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp  216 (490)
T PRK10642        138 GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP  216 (490)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence            45678999999999999999887666666666665443332         14677777775544443 333445678863

>PRK11043 putative transporter; Provisional

Probab=97.75  E-value=0.00039  Score=44.57  Aligned_cols=64  Identities=9%  Similarity=0.200  Sum_probs=50.9

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL   69 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~   69 (87)
                      ..+++|.+|.+.|.+..+.......++..+++.+...+.+ .+++..+++.+...++..+...+.
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        116 QALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHc
Confidence            3567899999999998888887788888899998888887 677788888877777766655443

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.75  E-value=0.00023  Score=46.58  Aligned_cols=68  Identities=18%  Similarity=0.098  Sum_probs=48.1

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWI-VTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~-~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      .....|.+|.+.|++++|+......+++.+ ++.+...+.. .+|+..|++.+++.++..++..+++||+
T Consensus       142 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~  211 (452)
T PRK11273        142 GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDT  211 (452)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            356789999999999999987777777644 3433222223 5677788888877777766666667765

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.71  E-value=0.00033  Score=43.34  Aligned_cols=64  Identities=19%  Similarity=0.210  Sum_probs=52.3

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV   66 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~   66 (87)
                      +....+.+|.+|.+.|++..++......++..+++.+...+.+ .+++..+++.+...++..+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         106 PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            3455789999999999999999999999999999999998888 567777777766666655543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.70  E-value=0.00012  Score=45.81  Aligned_cols=58  Identities=5%  Similarity=-0.005  Sum_probs=48.8

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVA   62 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~   62 (87)
                      ...+.+|.+|.+.|++..|+......+++.+++.+.+.+.+ .++...+.+.+++.+++
T Consensus       316 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       316 FPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             cHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            34678999999999999999999999999999999999887 67777777766655553

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.69  E-value=0.00022  Score=45.88  Aligned_cols=71  Identities=7%  Similarity=0.118  Sum_probs=55.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      |...++++|.+|.+.|+++.++......++..+++.+...+.+ . +|+..|++.++..++.... .+..||++
T Consensus       113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~  185 (402)
T PRK11902        113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT-TLWAPEPE  185 (402)
T ss_pred             HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH-HHhcCCCc
Confidence            3445788999999999999999998888899998888888777 3 6788888877776665443 34567653

>PRK15075 citrate-proton symporter; Provisional

Probab=97.67  E-value=0.00023  Score=46.32  Aligned_cols=68  Identities=22%  Similarity=0.167  Sum_probs=42.6

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFM--------ME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ...+++|.+|.+.|++.+++.....+.+..+++.+...+        .+ .+|+..|++.... +....+.....||+
T Consensus       138 ~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~-~~~~~~~~~~~~e~  214 (434)
T PRK15075        138 VSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLI-VPFIFLIRRSLEET  214 (434)
T ss_pred             HHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHH-HHHHHHHHHhcCCC
Confidence            457899999999999999998877766665555544433        23 5666677653322 22222233345664

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.65  E-value=0.00026  Score=46.48  Aligned_cols=68  Identities=18%  Similarity=0.381  Sum_probs=50.3

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ...++.|.+|.+.|+++.++......+++.+++.+...+.+ .++++.|++. .+.++..++.....||.
T Consensus       129 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~-~~~~~~~~~~~~~~p~~  197 (496)
T PRK03893        129 SATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG-ILPIIFALWLRKNLPEA  197 (496)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHH-HHHHHHHHHHHHhCCCc
Confidence            45678999999999999999999999999999999988877 5666666543 33333333334445664

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.57  E-value=0.00057  Score=49.30  Aligned_cols=72  Identities=11%  Similarity=-0.053  Sum_probs=54.8

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      .|...+++.+++|.+.|++++|+......++..+++.+.+.+.. .++...| +...+..+..++..+++|+++
T Consensus       126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCCC
Confidence            46677899999999999999999999999999999999999888 5555555 444444444444445566653

>PRK03699 putative transporter; Provisional

Probab=97.56  E-value=0.0012  Score=42.46  Aligned_cols=63  Identities=5%  Similarity=0.152  Sum_probs=49.1

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFV   66 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~   66 (87)
                      ....+++|.+|.+.|+++.++......+++.+++.+...+..  .+|++.|.+.++..++..++.
T Consensus       115 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        115 IGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             chhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            345678999999999999998887778888888888777665  568888887777766655543

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.56  E-value=0.0011  Score=43.34  Aligned_cols=69  Identities=17%  Similarity=0.300  Sum_probs=50.6

Q ss_pred             hhhhcccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hhch------HHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            6 SVIMAEIFPINIKGSAGSLVILL-HNCGNWIVTCTFHFMME-WSRT------GAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~------~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ..|+.|..|.+.|++++++.... ..+++.++.++.+.+.+ .+..      ..+.+.+++.++..++.+++.+|+.
T Consensus       323 ~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  323 VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            36899999999999999998776 47899999999999988 4433      2344555555555555555556643

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.56  E-value=0.00026  Score=45.76  Aligned_cols=67  Identities=10%  Similarity=0.120  Sum_probs=52.2

Q ss_pred             hhhhcccCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378            6 SVIMAEIFPINIKGSAGSLV-ILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      ..+++|.+|.+.|++..+.. .....+++.+++.....+.+ .++...|.+.+.+.++..++.++..++
T Consensus       337 ~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~  405 (420)
T PRK09528        337 FKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG  405 (420)
T ss_pred             HHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence            35678999999999887663 44567888899999999998 677888888888887777766665554

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.56  E-value=0.00062  Score=45.42  Aligned_cols=55  Identities=13%  Similarity=0.210  Sum_probs=45.6

Q ss_pred             ccchhhhcccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINI--KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWV   57 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~   57 (87)
                      |....+++|.||.+.  |+++.++.+...+++..+++.+.+.+.+ .+|++.|++.++
T Consensus       124 ~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        124 ANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             CCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            455688999999884  5788999999999999999999999988 777777776433

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.55  E-value=0.00067  Score=45.42  Aligned_cols=69  Identities=16%  Similarity=0.207  Sum_probs=45.5

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIV-TCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ...|++|+.|.+.|+..-.+......++..++ .+..+.+..  ..|++.+.+-.+..++. .+...++||+.
T Consensus       137 ~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~-l~~l~~~PESP  208 (485)
T KOG0569|consen  137 VPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQ-LALLPFLPESP  208 (485)
T ss_pred             HHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence            34789999999999988888877777777777 334555554  33444454444444444 44456689973

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.55  E-value=0.00077  Score=46.35  Aligned_cols=70  Identities=10%  Similarity=0.040  Sum_probs=52.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h----------------------hchHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W----------------------SRTGAFSIFWVIC   59 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~----------------------~~~~~~~~~~~~~   59 (87)
                      ++...|+.|.+|.+.|++..|+......++..+++.+...+.+ .                      .|+..|++.+++.
T Consensus       191 ~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~  270 (633)
T TIGR00805       191 PLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVA  270 (633)
T ss_pred             hcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHH
Confidence            4566899999999999999999999999999999888887765 2                      1344566767666


Q ss_pred             HHHHHHHHhhcccC
Q 047378           60 IVAVLFVAFLVPET   73 (87)
Q Consensus        60 ~~~~~~~~~~~pet   73 (87)
                      ++..+.. +.+|++
T Consensus       271 ~l~~v~l-~~~p~~  283 (633)
T TIGR00805       271 LLTSIPF-FFFPKA  283 (633)
T ss_pred             HHHHHHH-HhCccc
Confidence            6655543 345543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09952 shikimate transporter; Provisional

Probab=97.54  E-value=0.00054  Score=44.76  Aligned_cols=70  Identities=20%  Similarity=0.180  Sum_probs=46.7

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME---------WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+++|.+|.+.|++..+.......++..++..+...+..         .+|+..|++.++..++ .++.....||++
T Consensus       145 ~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~~~es~  223 (438)
T PRK09952        145 GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNGMEESA  223 (438)
T ss_pred             HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHhCCCCh
Confidence            345789999999999999888877777777666655544331         4677777766555443 333344567764

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.52  E-value=0.00044  Score=45.44  Aligned_cols=63  Identities=13%  Similarity=0.128  Sum_probs=51.5

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      ...++.+.+| +.|+++.|+......++..+++.+.+.+.+ .++++.|++.+++.++..+..++
T Consensus       129 ~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~  192 (455)
T TIGR00892       129 SLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGAL  192 (455)
T ss_pred             HHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            3456788886 789999999999999999999999888887 78889999988877766555443

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.50  E-value=0.00014  Score=47.71  Aligned_cols=56  Identities=7%  Similarity=0.033  Sum_probs=45.0

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVIC   59 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~   59 (87)
                      ....+++|.+|.+.|++++|+......+++.+++.+.+.+.+ .+....+...+...
T Consensus       386 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        386 LLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             hhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            344678999999999999999999999999999999999888 55555555444333

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.50  E-value=0.00093  Score=42.95  Aligned_cols=67  Identities=18%  Similarity=0.296  Sum_probs=50.3

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ...+..|.+|.+ |++++++......++..+++.+.+.+.+ .++...+.+.+...+++.+.. ++.||+
T Consensus       326 ~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~  393 (393)
T PRK15011        326 GMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL-LRIKDV  393 (393)
T ss_pred             HHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhhcCC
Confidence            345678999965 9999999888888999999999999888 666667766666666655444 445653

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.48  E-value=0.00095  Score=43.10  Aligned_cols=67  Identities=10%  Similarity=0.066  Sum_probs=51.1

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ..+++|..|.+.|+++.++......++..+++.+...+.+ .++++.+++.+...++..+. ...+||+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~  199 (417)
T PRK10489        132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLP-LLRLPAL  199 (417)
T ss_pred             hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            4567899999999999999988889999999999988887 56667776665555554444 3446664

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.48  E-value=0.00011  Score=48.20  Aligned_cols=71  Identities=20%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTF--HFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~--~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      |-+...++-.||.+.|++..|+...+.++++.+.+.+.  ..... .+++..|++=+++.++..++.++..+|+
T Consensus       136 pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         136 PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             cHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            44557788899999999999999999999999999988  66665 5788889888888888888877776544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.47  E-value=0.00036  Score=43.67  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=48.3

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      .+..|.+| +.|+++.++......++..+.+.+...+.+ .++++.|.+.++..++..+..+++.+|
T Consensus       114 ~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  179 (377)
T TIGR00890       114 NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGY  179 (377)
T ss_pred             HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheec
Confidence            45677777 579999999988877877776666666665 678888888888888777766655543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=97.44  E-value=0.0012  Score=47.52  Aligned_cols=44  Identities=18%  Similarity=0.110  Sum_probs=38.6

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW   46 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~   46 (87)
                      |....+++|.+|.+.|++++|+......++..+++.+...+...
T Consensus       122 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        122 PAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45567899999999999999999999999999999988887654

>PRK03545 putative arabinose transporter; Provisional

Probab=97.42  E-value=0.0014  Score=41.95  Aligned_cols=64  Identities=11%  Similarity=0.024  Sum_probs=53.1

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhc
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLV   70 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~   70 (87)
                      ...+.|..| +.|++++|+......++..+++.+.+.+.+ .+....+...+.+.+++.++.++..
T Consensus       316 ~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (390)
T PRK03545        316 QVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF  380 (390)
T ss_pred             HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence            355667777 688999999999999999999999999998 7788888888888888777766654

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=97.41  E-value=7.3e-06  Score=54.10  Aligned_cols=74  Identities=15%  Similarity=0.129  Sum_probs=62.8

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      .|+...++++.||...|+++.++.+.+...+..++-.+...+.+ .. |++.|.+-++++++..++..++.+|...
T Consensus       139 ~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  139 SPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             cccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            46677899999999999999999999988888888777777777 33 8889999999999999998888877654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.40  E-value=0.0018  Score=40.78  Aligned_cols=70  Identities=19%  Similarity=0.227  Sum_probs=47.5

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME---------WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ....+++|.+|.+.|++..++......++..+++.+...+..         .+++..+.+.+.+.++... .....||++
T Consensus       116 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~  194 (394)
T TIGR00883       116 GAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY-LRRNLEETP  194 (394)
T ss_pred             ccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH-HHHhcCCCh
Confidence            345789999999999999999988888888888877655432         3455566655554444333 333456643

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=97.39  E-value=0.00078  Score=46.16  Aligned_cols=62  Identities=15%  Similarity=0.260  Sum_probs=46.4

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA   67 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~   67 (87)
                      ...++|+.|.|.|..+.++.....-...++++.....+.. .+|+|.|++++++..++.+..+
T Consensus       152 ~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  152 ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            4568999999999998887776555555566777666555 6788999888888777766543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.37  E-value=0.0016  Score=41.88  Aligned_cols=71  Identities=14%  Similarity=-0.032  Sum_probs=52.0

Q ss_pred             chhhhcccCCcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            5 PSVIMAEIFPINIKGS--AGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~--~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ...+..|..|.+.|..  ..++......++..+++.+...+.+ .+++..|++.+...++..+..++..||.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~  199 (393)
T PRK15011        126 MFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRK  199 (393)
T ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCC
Confidence            3455666666555543  2366777778999999999998887 688888888888888777777777787643

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.36  E-value=0.00083  Score=44.07  Aligned_cols=65  Identities=14%  Similarity=0.111  Sum_probs=56.2

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---chHHHHHHHHHHHHHHHHHHhhccc
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS---RTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      .++++.||++.+++++|+.. .++++..+..++.|.+.. .+   ++.+..++....++..+..++.+.|
T Consensus       127 ~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d  195 (417)
T COG2223         127 PNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMND  195 (417)
T ss_pred             ccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            56899999999999999999 999999999999999888 55   7778888888888888887776644

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.35  E-value=0.0016  Score=41.08  Aligned_cols=62  Identities=21%  Similarity=0.307  Sum_probs=49.3

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV   66 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~   66 (87)
                      ....+..|..|.+ |+++.++......++..+++.+.+.+.+ .++...+++.+++.+++.+..
T Consensus       308 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  370 (375)
T TIGR00899       308 IGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL  370 (375)
T ss_pred             HHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence            3456788999876 5599999998999999999999999888 667777877777776666654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.32  E-value=0.002  Score=42.41  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=56.6

Q ss_pred             hhhhcccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            6 SVIMAEIFPINIKGSAGSLVILL-HNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      .-|+++.+|+|..++...+.... ..++.++.+...+.+.+ .+....|++++.+.+...++..+.+++.+.
T Consensus       334 fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~  405 (412)
T PF01306_consen  334 FKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK  405 (412)
T ss_dssp             HHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred             HHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence            35899999999999999997544 57888999999999999 677789999999988888888887766554

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR01272 gluP glucose/galactose transporter

Probab=97.31  E-value=0.0025  Score=40.12  Aligned_cols=72  Identities=11%  Similarity=0.059  Sum_probs=53.3

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------hhchHHHHHHHHHHHHHHHH-
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-----------------WSRTGAFSIFWVICIVAVLF-   65 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------------~~~~~~~~~~~~~~~~~~~~-   65 (87)
                      ....|++++.|.+.+++.+++...++.++..++|.+...+..                 ..+..+|++.+.+..+..+. 
T Consensus        30 ~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~  109 (310)
T TIGR01272        30 AANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIF  109 (310)
T ss_pred             hHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999987763                 24556677666655554443 


Q ss_pred             HHhhcccCCC
Q 047378           66 VAFLVPETKG   75 (87)
Q Consensus        66 ~~~~~pet~~   75 (87)
                      .+...||.+.
T Consensus       110 ~~~~~p~~~~  119 (310)
T TIGR01272       110 AFLPLPELQE  119 (310)
T ss_pred             HHccCCCCCc
Confidence            3344576544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.27  E-value=0.00014  Score=47.75  Aligned_cols=62  Identities=19%  Similarity=0.119  Sum_probs=49.8

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLF   65 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~   65 (87)
                      ..+.+..|.+|.+.|++++|+......+++.++|.+...+.+ . ++...|++.+++.+++.++
T Consensus       353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            456778899999999999999999999999999999998887 4 3566777766666555543

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.18  E-value=0.0023  Score=42.53  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=55.5

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      .|....+++|..|.+.|++.+|+......+++.+++.+.....+ .++.+.|...++..++..+..++..|
T Consensus       399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35667889999999999999999999999999999888877655 55666777777777776666655444

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.18  E-value=0.00026  Score=46.49  Aligned_cols=69  Identities=12%  Similarity=0.027  Sum_probs=50.7

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW----SRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      |....+++|.+|.+.|++++|+......+++.+++.+...+...    +++..|.+.+.+.++..+..+++.+
T Consensus       141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~  213 (467)
T PRK09556        141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGS  213 (467)
T ss_pred             hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCC
Confidence            45567899999999999999999888888888888877665542    3555666667666666555555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=97.16  E-value=0.0051  Score=41.15  Aligned_cols=59  Identities=14%  Similarity=0.210  Sum_probs=45.9

Q ss_pred             ccchhhhcccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINI--KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIV   61 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~   61 (87)
                      |....+.+|.||.+.  |+.+.++.+...++++.++|.+.+.+.+ .++++.|.+.++...+
T Consensus       131 ~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        131 ANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             CCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            445578999998653  4567888888999999999999999988 6788888776654444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=97.11  E-value=0.0051  Score=41.10  Aligned_cols=76  Identities=16%  Similarity=0.141  Sum_probs=65.8

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLE   79 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~   79 (87)
                      ..++|.++....+.|....|+...+.+.+..++|.+...... .+...++++-++..++..++..+++||+...+.+
T Consensus       132 ~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  132 VGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             hhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            356889999999999999999999999999999999998888 6777788888888899899999999998665544

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.09  E-value=0.0063  Score=39.67  Aligned_cols=68  Identities=12%  Similarity=0.098  Sum_probs=50.4

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------hhchHHHHHHHHH
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME---------------------------WSRTGAFSIFWVI   58 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~~~~~~   58 (87)
                      ..++.|..|.+.|++..++....+.++..+++.+.+.+..                           .+++..|.+.+.+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~  195 (410)
T TIGR00885       116 NPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAV  195 (410)
T ss_pred             hHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788999999999999999999999999988776642                           2366778777776


Q ss_pred             HHHHHHHHH-hhcccC
Q 047378           59 CIVAVLFVA-FLVPET   73 (87)
Q Consensus        59 ~~~~~~~~~-~~~pet   73 (87)
                      .++..++.. ...||.
T Consensus       196 ~~~~~~~~~~~~~p~~  211 (410)
T TIGR00885       196 VLAVALLIMLTKMPAL  211 (410)
T ss_pred             HHHHHHHHHHhcCCCC
Confidence            666555443 335653

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=97.08  E-value=0.0042  Score=41.56  Aligned_cols=67  Identities=19%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W--SRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ...|++|+-|++.|+.-.+.......++..++ ++...... .  +|+..+.+..+.+++..+. .++.||+
T Consensus       163 ~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  163 APVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             chhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            45899999999999999999887777444444 55554444 2  4555555555555555555 6778986

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.03  E-value=0.0086  Score=38.62  Aligned_cols=57  Identities=9%  Similarity=0.022  Sum_probs=43.5

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVA   62 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~   62 (87)
                      ...++.|.+| +.|++.+++.......+..+++.+.+.+.+ . +|+..+.+++...++.
T Consensus       118 ~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        118 MPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVA  176 (393)
T ss_pred             hhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            4467888898 779999999998888888999998888777 3 5666666655554443

>TIGR00897 2A0118 polyol permease family

Probab=97.03  E-value=0.0073  Score=38.99  Aligned_cols=61  Identities=20%  Similarity=0.380  Sum_probs=49.2

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      ...+|..| +.|+++.|+......+++.++|.+...+.+ .+....+++.+++.++..+...+
T Consensus       338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence            34567766 579999999999999999999999999988 67777888888777776665443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=97.03  E-value=0.00041  Score=46.50  Aligned_cols=72  Identities=17%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM-------EWSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      |..-.+++-.|..+.|++-+|+..+.+.+++++++++...+.       ..+|++.|.+-+++.++..+++++++|+..
T Consensus       153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            334477899999999999999999999999999999988853       257889999999999999999888888753

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.02  E-value=0.005  Score=41.22  Aligned_cols=72  Identities=15%  Similarity=0.376  Sum_probs=57.6

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKGRT   77 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   77 (87)
                      .-++.+|+.|....+.-.|+....++..++++|.++..+.+ .+ .+..+....++.+++.++. ..+++.|++.
T Consensus       401 sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~~  474 (477)
T PF11700_consen  401 SRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGRE  474 (477)
T ss_pred             HHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhhh
Confidence            44789999999999999999999999999999999999998 44 5566666666666666665 4467766654

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.01  E-value=0.0021  Score=41.09  Aligned_cols=65  Identities=9%  Similarity=-0.005  Sum_probs=54.0

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      .+..+..|.+.|++..++......++..+++.+...+.+ .++...|.+.+++.++..++.++..+
T Consensus       334 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        334 TLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677899999999999999999999999999998887 67888888888888888777665443

>TIGR00897 2A0118 polyol permease family

Probab=97.00  E-value=0.0038  Score=40.30  Aligned_cols=47  Identities=9%  Similarity=-0.046  Sum_probs=33.8

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-hhchHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGN-WIVTCTFHFMME-WSRTGAFS   53 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~-~~~~~~~~~l~~-~~~~~~~~   53 (87)
                      .++.|.+|.+.|++++|+......++. ..++.+...+.+ .++...++
T Consensus       128 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~  176 (402)
T TIGR00897       128 VWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLW  176 (402)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence            456788999999999999998887775 466766666555 44333333

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.00  E-value=0.006  Score=40.56  Aligned_cols=61  Identities=15%  Similarity=0.233  Sum_probs=48.5

Q ss_pred             ccchhhhcccCCcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINI---KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAV   63 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~---R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~   63 (87)
                      |....+.+|.+|.+.   |+++.++.+...+++..+++.+.+.+.+ .+++..|.+.++..++..
T Consensus       121 ~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~  185 (475)
T TIGR00924       121 ANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL  185 (475)
T ss_pred             CCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence            445578899998764   8899999999999999999999999888 577778877665444443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK12382 putative transporter; Provisional

Probab=96.97  E-value=0.0072  Score=38.69  Aligned_cols=50  Identities=4%  Similarity=-0.269  Sum_probs=39.0

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHH
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIF   55 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~   55 (87)
                      ..+..|.+|.+.|++++|+.......+..+++.+.+.+.+ .++...+.+.
T Consensus       134 ~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~  184 (392)
T PRK12382        134 LTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT  184 (392)
T ss_pred             HHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence            3567899999999999999888888888888888887776 5555444443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.95  E-value=0.009  Score=38.30  Aligned_cols=66  Identities=14%  Similarity=0.101  Sum_probs=49.8

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      .+..|..+.+.|+...+.......++..+++.....+.+ .+++..|++.++..++..+...+..||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~  186 (390)
T TIGR02718       120 GMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDR  186 (390)
T ss_pred             HHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            456788888888888777776667888888887777777 688889998888887766665554444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.93  E-value=0.0053  Score=39.33  Aligned_cols=57  Identities=7%  Similarity=-0.158  Sum_probs=42.9

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIV   61 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~   61 (87)
                      ...+..|.+|.+.|+++.++.......+..+++.+...+.+ .+++..+++.....++
T Consensus       133 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~  190 (399)
T PRK05122        133 SILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALL  190 (399)
T ss_pred             HHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            44567899999999999999887778888888888888777 5666666555444433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.00061  Score=44.82  Aligned_cols=72  Identities=13%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             chhhhcccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378            5 PSVIMAEIFPINI-KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGR   76 (87)
Q Consensus         5 ~~~~~~E~fp~~~-R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~   76 (87)
                      ..+++++.||.+. |++++|+.-....++-.++|-.-+.+++ .+...+|.++++++++-..+..+.++.++..
T Consensus       180 glamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~  253 (464)
T KOG3764|consen  180 GLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD  253 (464)
T ss_pred             hHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence            3467889999988 6999999999999999999999999999 8999999999999999999887766554433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=96.91  E-value=0.00091  Score=43.86  Aligned_cols=41  Identities=12%  Similarity=0.068  Sum_probs=36.1

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      .-++++|+++.+.|+++++.......++.+++|.+-.++..
T Consensus       141 ~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  141 IRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            34789999999999999999999998998898888887665

>PTZ00207 hypothetical protein; Provisional

Probab=96.85  E-value=0.011  Score=40.71  Aligned_cols=65  Identities=12%  Similarity=0.231  Sum_probs=48.8

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      ...+.+.|| +.|++++|+......+++.+.+.+...+...++...+++.+.+.++..++.+.+++
T Consensus       142 ~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr  206 (591)
T PTZ00207        142 VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMR  206 (591)
T ss_pred             HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhee
Confidence            345778887 78999999999999999887666655555555667788888888887776666553

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.83  E-value=0.0033  Score=39.87  Aligned_cols=44  Identities=14%  Similarity=0.208  Sum_probs=39.7

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS   47 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~   47 (87)
                      +.+.+++|.+|++.|+++.|+......++..++|.+.+.+.+ .+
T Consensus       348 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g  392 (405)
T TIGR00891       348 ILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD  392 (405)
T ss_pred             hHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            455788999999999999999999999999999999999988 44

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=96.78  E-value=0.0015  Score=42.39  Aligned_cols=52  Identities=6%  Similarity=-0.007  Sum_probs=42.2

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHH
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWV   57 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~   57 (87)
                      +....|.+|++.|+++.|+.....+++++++|.+.+.+.+ .+ +...+++.++
T Consensus       355 ~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~  408 (412)
T TIGR02332       355 WTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAA  408 (412)
T ss_pred             HhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHH
Confidence            3556789999999999999999999999999999998888 43 5555554433

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.78  E-value=0.015  Score=37.66  Aligned_cols=42  Identities=12%  Similarity=0.203  Sum_probs=33.7

Q ss_pred             cchhhhcccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFP-------INIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         4 ~~~~~~~E~fp-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ..+++.+|..+       .+.+++..|+......++..+++.+.+.+.+
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~  379 (437)
T TIGR00792       331 LVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILG  379 (437)
T ss_pred             HHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567777754       5567888899998999999999999998876

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.70  E-value=0.014  Score=37.72  Aligned_cols=68  Identities=12%  Similarity=0.095  Sum_probs=47.5

Q ss_pred             hhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            7 VIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME--------WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         7 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      ++.+|+. +.+.|++..++......+++.+++.+.+.+..        .++...+.+.+++..+..++.++..+|.+
T Consensus       122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            5667876 57889999998887777777776666554442        24555677777777777766666677754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.68  E-value=0.019  Score=36.72  Aligned_cols=66  Identities=11%  Similarity=0.105  Sum_probs=49.5

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      |.......|..|.+.+....+.......++..++|.+...+.+ .+..+.|.+.+.+.++..+..++
T Consensus       304 p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        304 PVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            3445667888988887777777777778999999999999888 66777777777777665555433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=96.67  E-value=0.0081  Score=38.90  Aligned_cols=44  Identities=14%  Similarity=0.026  Sum_probs=38.7

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW   46 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~   46 (87)
                      |....+..|..|.+.|+++.|+......++..+++.+.+.+.+.
T Consensus       316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~  359 (400)
T PRK11646        316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDL  359 (400)
T ss_pred             ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence            34457788999999999999999998999999999999998883

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.63  E-value=0.025  Score=38.31  Aligned_cols=47  Identities=9%  Similarity=0.007  Sum_probs=40.2

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGA   51 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   51 (87)
                      .+.+++..+|.+.|+++.|+..+...++.++++.+.+.+...+|+..
T Consensus       135 ~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y  181 (511)
T TIGR00806       135 YSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISY  181 (511)
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhH
Confidence            35789999999999999999999999999999999998554655544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.63  E-value=0.0021  Score=40.25  Aligned_cols=44  Identities=18%  Similarity=0.349  Sum_probs=38.9

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhc
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSR   48 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~   48 (87)
                      .+.+.+|.+|.+.|+++.|+......+++.+++.+.+.+.+ .++
T Consensus       331 ~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  375 (379)
T TIGR00881       331 IGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGW  375 (379)
T ss_pred             HHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcc
Confidence            34678999999999999999999999999999999999888 444

>TIGR00896 CynX cyanate transporter

Probab=96.58  E-value=0.034  Score=35.12  Aligned_cols=56  Identities=11%  Similarity=0.092  Sum_probs=40.2

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--chHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--RTGAFSIFWVICIV   61 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~~~~~~~~~~~~~~   61 (87)
                      ...++.|.+| +.|+++.|+......++..+++.+.+.+.+ .+  ++..|...+...++
T Consensus       108 ~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       108 LPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             chHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            3456788887 679999999998888888888888877766 32  55556555544433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.52  E-value=0.0031  Score=39.71  Aligned_cols=45  Identities=16%  Similarity=0.169  Sum_probs=36.0

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hh
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLH-NCGNWIVTCTFHFMME-WS   47 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~   47 (87)
                      +....+++|.+|.+.|+++.++..... .++..++|.+.+.+.+ .+
T Consensus       331 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g  377 (394)
T TIGR00883       331 GPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTG  377 (394)
T ss_pred             hhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcC
Confidence            345678899999999999999865554 5677799999998888 44

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.42  E-value=0.024  Score=37.89  Aligned_cols=68  Identities=10%  Similarity=0.107  Sum_probs=52.8

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      .+++..++.|.+.+++..++......++..+++.+.+.+.+ .++...|.+.+++.+.+.+...+ ++++
T Consensus       337 ~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~  405 (491)
T PRK11010        337 FVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT  405 (491)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence            45677899999999999999999998988888888888888 66666777777777776665544 3443

>PRK10054 putative transporter; Provisional

Probab=96.40  E-value=0.024  Score=36.72  Aligned_cols=65  Identities=18%  Similarity=0.079  Sum_probs=47.4

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      |....++.+.-|++.|++..+... ..+++..++|.....+.+ .+....|.+.+.+.++..++..+
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  382 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLK  382 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHh
Confidence            344567788899999999988654 677899999999999999 54555666665555555555443

>PRK10504 putative transporter; Provisional

Probab=96.39  E-value=0.016  Score=38.04  Aligned_cols=40  Identities=15%  Similarity=0.186  Sum_probs=35.0

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ..+..+..|.+.|+++.|+......++..+++.+.+.+.+
T Consensus       375 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        375 NTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999999998887766

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.35  E-value=0.02  Score=41.45  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=43.3

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW--SRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      ..+++.|..|.+.|++++|+......++..+++.+...+...  .....+++.+.+.++..++.....|
T Consensus       343 ~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (1146)
T PRK08633        343 LNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLP  411 (1146)
T ss_pred             HHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            457788999999999999999988888877666665554432  2333455544444444443333333

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=96.02  E-value=0.057  Score=34.64  Aligned_cols=58  Identities=16%  Similarity=0.240  Sum_probs=44.6

Q ss_pred             hhhcccCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPI-NIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVL   64 (87)
Q Consensus         7 ~~~~E~fp~-~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~   64 (87)
                      ....+..+. +.|++.+++......++..+++.+.+.+.+ .+....|...+.+.+++..
T Consensus       326 ~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       326 TAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            344555665 899999999999999999999999999998 5666777666655555443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00788 fbt folate/biopterin transporter

Probab=96.01  E-value=0.12  Score=34.55  Aligned_cols=40  Identities=20%  Similarity=0.241  Sum_probs=36.3

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ..++++..|.+.+++..++..+...++..+++.+...+.+
T Consensus       373 ~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~  412 (468)
T TIGR00788       373 LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME  412 (468)
T ss_pred             HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778999999999999999999999999999988777776

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.00  E-value=7.5e-05  Score=48.47  Aligned_cols=70  Identities=19%  Similarity=0.219  Sum_probs=44.6

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh---chHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS---RTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      +...+|+.|..|++.|++..++......++..++..+...... ..   |+..+.+-++..++ ..+...++||+
T Consensus       121 ~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~-~~~~~~~~pES  194 (451)
T PF00083_consen  121 VVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLL-VLLLRFFLPES  194 (451)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence            3456899999999999999888876666666666655544433 22   44444444334433 34445668987

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.96  E-value=0.063  Score=36.52  Aligned_cols=70  Identities=13%  Similarity=0.172  Sum_probs=51.6

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH-hhcccCCC
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA-FLVPETKG   75 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~-~~~pet~~   75 (87)
                      .+...+..|.+.|++..|+..+....+..++..+.+.+.+ .+....+.+.++..++..++.. ..+++.+.
T Consensus       329 ~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~~~l~~~~~  400 (524)
T PF05977_consen  329 NTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALRFPLRQGEE  400 (524)
T ss_pred             HHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence            3567789999999999999999999999999999999888 6666666665555555544433 23444443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=95.96  E-value=0.021  Score=38.62  Aligned_cols=60  Identities=17%  Similarity=0.269  Sum_probs=52.5

Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378           12 IFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus        12 ~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      .|..|.|+.++|++.+...++.++.+.+..++.+ .+|++.+++++.+.+-..+.....-|
T Consensus       162 ~YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp  222 (509)
T KOG2504|consen  162 TYFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRP  222 (509)
T ss_pred             hHhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence            6778899999999999999999999999999888 89999999999998777777666555

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.87  E-value=0.028  Score=36.01  Aligned_cols=65  Identities=12%  Similarity=0.004  Sum_probs=44.9

Q ss_pred             hhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            6 SVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      .++..+.  .+.|+++.+..+..+.++..++|.+...+.+ .+++..|++.+...++..+. .+..||.
T Consensus       116 ~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~  181 (382)
T PRK11128        116 DALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTI  181 (382)
T ss_pred             HHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCC
Confidence            3444444  3457788888888889999999999999888 68888887766544443333 3344654

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=95.87  E-value=0.085  Score=35.56  Aligned_cols=69  Identities=12%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             hhhhcccCCcchHH--HHHHHHHHHHHHHHHHHHHHHHHHH--H--------------hhchHHHHHHHHHHHHHHHHHH
Q 047378            6 SVIMAEIFPINIKG--SAGSLVILLHNCGNWIVTCTFHFMM--E--------------WSRTGAFSIFWVICIVAVLFVA   67 (87)
Q Consensus         6 ~~~~~E~fp~~~R~--~~~~~~~~~~~~~~~~~~~~~~~l~--~--------------~~~~~~~~~~~~~~~~~~~~~~   67 (87)
                      -++++|+.|.+.|.  .+.++......+++.+++.+.....  .              ......|++-+++.+++..+..
T Consensus       136 rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~  215 (477)
T TIGR01301       136 RAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIAL  215 (477)
T ss_pred             HHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHe
Confidence            36899999999774  6777777777787777777654431  1              1334567777777777777777


Q ss_pred             hhcccCC
Q 047378           68 FLVPETK   74 (87)
Q Consensus        68 ~~~pet~   74 (87)
                      +..+|..
T Consensus       216 ~~v~E~~  222 (477)
T TIGR01301       216 SAVKENP  222 (477)
T ss_pred             eeeeccC
Confidence            7788864

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.83  E-value=0.068  Score=34.22  Aligned_cols=39  Identities=5%  Similarity=-0.097  Sum_probs=33.2

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ....+..|.+.|++++++......++..+++.+...+.+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~  155 (381)
T PRK03633        117 SALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVST  155 (381)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            345688899999999999998889999999998887765

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.83  E-value=0.1  Score=33.56  Aligned_cols=59  Identities=17%  Similarity=0.066  Sum_probs=45.4

Q ss_pred             hhhhcccCCcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 047378            6 SVIMAEIFPINIKGSAGSLVIL-LHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLF   65 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   65 (87)
                      ..++++. |.+.|++++++... ...++..+++.+.+.+.+......|+..+.+.+++.++
T Consensus       315 ~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       315 MRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3567777 99999999999754 45688889999999999843457788877777765444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=95.82  E-value=0.037  Score=36.07  Aligned_cols=66  Identities=14%  Similarity=0.256  Sum_probs=50.1

Q ss_pred             hhhcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhccc
Q 047378            7 VIMAEIFP-INIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         7 ~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      ++.+|+.+ .+.|.+..+.......+++.+...+.+.+.+ .       ++....++.+++.++..+...+..+|
T Consensus       126 al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  126 ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            67889998 4689999999988888888777777776554 2       34556677777777777777777788

>TIGR00895 2A0115 benzoate transport

Probab=95.81  E-value=0.016  Score=36.54  Aligned_cols=41  Identities=17%  Similarity=0.197  Sum_probs=35.5

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFM   43 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l   43 (87)
                      +..+.+.+|.+|.+.|+++.|+......++..++|.+.+.+
T Consensus       357 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       357 SGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            34567899999999999999999999999999999887654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=95.80  E-value=0.047  Score=37.14  Aligned_cols=63  Identities=17%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLF   65 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   65 (87)
                      |.-.++++|+.|.+....+.++.....++...++|.+.+.+.. .+....|.+.+...++....
T Consensus       122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~  185 (524)
T PF05977_consen  122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA  185 (524)
T ss_pred             HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445789999999999999999999999999999999998887 67777777766655554433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11462 putative transporter; Provisional

Probab=95.68  E-value=0.18  Score=33.55  Aligned_cols=67  Identities=16%  Similarity=0.198  Sum_probs=43.3

Q ss_pred             hhhcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-------chHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            7 VIMAEIFP-INIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-------RTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         7 ~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-------~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ++.+|+-+ .+.|++..++-...+.+++.+++.+...+.. .+       +.....+++++.+++....+...+|.
T Consensus       132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            66778877 7889999999988888887777776554444 22       23334455555555554544445554

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=95.65  E-value=0.01  Score=39.76  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=43.9

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H-hhchHHHHHHHHHHHHHHHHHH
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM----------E-WSRTGAFSIFWVICIVAVLFVA   67 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~----------~-~~~~~~~~~~~~~~~~~~~~~~   67 (87)
                      .|....++.+..|.+.|++.+|+......+++.++..+.....          . .+....|...++..++..+..+
T Consensus       400 ~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        400 SGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             hHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4566788899999999999999887777777777666654221          0 1234566666666555444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=95.63  E-value=0.028  Score=35.07  Aligned_cols=43  Identities=7%  Similarity=-0.037  Sum_probs=38.0

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      +....+..|..|.+.|+++.|+......++..+++.+.+.+.+
T Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       320 VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999999999888776

>PRK03699 putative transporter; Provisional

Probab=95.59  E-value=0.041  Score=35.44  Aligned_cols=59  Identities=5%  Similarity=0.037  Sum_probs=44.9

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV   66 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~   66 (87)
                      .+..|..|.+ +++..|.......++..++|.+.+.+.+ .+....++..+++.++..+..
T Consensus       317 ~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~  376 (394)
T PRK03699        317 TLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC  376 (394)
T ss_pred             HHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence            4566766644 6778888888888999999999999988 677777777777766665543

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.47  E-value=0.054  Score=35.12  Aligned_cols=56  Identities=9%  Similarity=0.053  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378           17 IKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus        17 ~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      .|++..|.......++..+++.+.+.+.+.+++..|++.+...++..+..++..+|
T Consensus       138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~  193 (420)
T PRK09528        138 RSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPD  193 (420)
T ss_pred             hccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccccc
Confidence            34556677777788888999999888877677788887777777666665554444

>PRK09669 putative symporter YagG; Provisional

Probab=95.42  E-value=0.4  Score=31.47  Aligned_cols=67  Identities=16%  Similarity=0.127  Sum_probs=42.0

Q ss_pred             hhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            7 VIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         7 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ++.+|+. +.+.|.+..++......+++.+++.+...+.. .       ++...+.+++++.++..+..++..+|.
T Consensus       132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~  207 (444)
T PRK09669        132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKER  207 (444)
T ss_pred             HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEe
Confidence            5678877 55789988888888888877777665544333 2       223345556666655555555544553

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.31  E-value=0.057  Score=34.68  Aligned_cols=52  Identities=12%  Similarity=0.042  Sum_probs=40.0

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVI   58 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~   58 (87)
                      ...+..|.  .+.|++..|..+....++..+++.+...+.+ .+++..|.+.+..
T Consensus       115 ~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       115 GDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             HHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            33444442  4678889999999999999999999998888 6777777766554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=95.18  E-value=0.072  Score=38.88  Aligned_cols=57  Identities=5%  Similarity=-0.113  Sum_probs=42.1

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIV   61 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~   61 (87)
                      ..+++.+..|.+.|++.+|+....+.++..+++.+...+..  .+....+++.+...++
T Consensus       355 ~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        355 LFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             HHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999988888765  2333344444433333

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.17  E-value=0.37  Score=31.98  Aligned_cols=70  Identities=26%  Similarity=0.346  Sum_probs=49.1

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--------chHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--------RTGAFSIFWVICIVAVLFVAFLVPETKGRT   77 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   77 (87)
                      ..++|+.|...-++..++..++.+++..++..+...+.+ .+        .+...++...+.++...+. ..+|+.+..+
T Consensus       341 vl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll-~lLp~~~~~~  419 (433)
T PF03092_consen  341 VLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLL-FLLPPQKRIT  419 (433)
T ss_pred             HHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHH-HHcCCCchhh
Confidence            568999999999999999999999999999888887766 22        2333444444454444443 4467655443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.04  E-value=0.085  Score=33.93  Aligned_cols=61  Identities=10%  Similarity=0.145  Sum_probs=47.8

Q ss_pred             hhhcccCCcchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSL-VILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVA   67 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~-~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~   67 (87)
                      .+..|..|.+.|+++.+. ......+++.+++.+...+.+ .+....|.+.+++.++..+...
T Consensus       330 ~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       330 KYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            456788899999887777 345678899999999999998 6777888888877777666543

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=94.84  E-value=0.25  Score=31.25  Aligned_cols=59  Identities=19%  Similarity=0.196  Sum_probs=35.9

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVL   64 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   64 (87)
                      ....+..|.+| +.|+++.++........+.+.+..... .+......+.++.........
T Consensus       320 ~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  378 (385)
T TIGR00710       320 IAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL-IHGNTAWPMSLSCLVLAVVSV  378 (385)
T ss_pred             HHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh-ccccChHHHHHHHHHHHHHHH
Confidence            34566778887 579999999888887766666666553 333333444444444444433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=94.80  E-value=0.16  Score=32.71  Aligned_cols=54  Identities=9%  Similarity=0.073  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378           20 SAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ...|..+....++..+++.+...+.+.+++..|++.+.+.++..++.+...||.
T Consensus       133 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (396)
T TIGR00882       133 FEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKA  186 (396)
T ss_pred             cccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            355667777778888888887776667788888888777777766655544543

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=94.77  E-value=0.058  Score=33.41  Aligned_cols=52  Identities=13%  Similarity=0.119  Sum_probs=36.9

Q ss_pred             hcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 047378            9 MAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIV   61 (87)
Q Consensus         9 ~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   61 (87)
                      ..+.||. .|+++.|+.-....+.+.+-..++..+...+....+.+.+....+
T Consensus       121 ~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~  172 (250)
T PF06813_consen  121 CVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAV  172 (250)
T ss_pred             HHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            3478884 799999999999999999988888777764333334444443333

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=94.76  E-value=0.021  Score=37.91  Aligned_cols=62  Identities=23%  Similarity=0.173  Sum_probs=41.0

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      .+.+.+|+.| +.|++..|+....+.+++.+.+.+.. ... .++...|++.+++.+++.++..+
T Consensus       369 ~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~  431 (476)
T PLN00028        369 TFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF  431 (476)
T ss_pred             hcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence            4556677655 78999999987777777777776643 111 23556777777777776665433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=94.69  E-value=0.04  Score=36.20  Aligned_cols=60  Identities=17%  Similarity=0.126  Sum_probs=43.9

Q ss_pred             hhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--h-chHHHHHHHHHHHHHHHHHHh
Q 047378            8 IMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W--S-RTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         8 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~-~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      ...|..|. .++...++....+.+++.++|.+.+.+.+ .  + +...|.+.++..+++.++..+
T Consensus       385 ~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       385 NSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             chhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            34466654 89999999999999999999998887765 2  2 455677777777776665443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=94.68  E-value=0.26  Score=33.32  Aligned_cols=73  Identities=16%  Similarity=0.073  Sum_probs=52.3

Q ss_pred             ccchhhhcccCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHH-h--hchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            3 GLPSVIMAEIFPINIK--GSAGSLVILLHNCGNWIVTCTFHFMME-W--SRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R--~~~~~~~~~~~~~~~~~~~~~~~~l~~-~--~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      .+||+++++..|.+.|  +.-+|+-..+..+-..+.....+.+.. .  .....+.+-++..+++.++..+.+|+++.
T Consensus       399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            4689999999996555  667777777777777777766666444 2  24455666677777778888888898764

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=94.56  E-value=0.023  Score=37.81  Aligned_cols=65  Identities=20%  Similarity=0.411  Sum_probs=53.2

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      ....|+-|.+.-+++.|+...++.+ ++.......+.+.+ .+|.+.|.++.+..+++.++......
T Consensus       369 l~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~  435 (448)
T COG2271         369 LAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN  435 (448)
T ss_pred             HHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            4578999999999999999999998 77788888888877 68888898888887777776555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=94.44  E-value=0.18  Score=33.45  Aligned_cols=58  Identities=19%  Similarity=0.342  Sum_probs=44.7

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378           14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus        14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      |.+ |+..++....+..+++.++..+.+.+.+ .+.+..|.+.+.+..+..+...+..+|
T Consensus       119 p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e  177 (433)
T PF03092_consen  119 PES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEE  177 (433)
T ss_pred             Cch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhh
Confidence            445 8888888888888899998888888887 667777877777777776666665665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=94.36  E-value=0.096  Score=34.91  Aligned_cols=71  Identities=13%  Similarity=0.166  Sum_probs=50.9

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETKGR   76 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~~~   76 (87)
                      +-+|.+++.|.+.-++-.|+....++...+++|++...+.+ .+ .+..+.....+..++.+. ...+|+.+.+
T Consensus       362 SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~-L~~v~~~~~~  434 (438)
T COG2270         362 SRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL-LLRVKVPGRR  434 (438)
T ss_pred             HHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh-EEeecCCCCc
Confidence            34789999999999999999999999999999999999888 43 333344443444443333 3445655433

>PRK09669 putative symporter YagG; Provisional

Probab=94.23  E-value=0.4  Score=31.47  Aligned_cols=43  Identities=12%  Similarity=0.126  Sum_probs=31.0

Q ss_pred             ccchhhhcccCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFP-------INIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         3 ~~~~~~~~E~fp-------~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ++.+++++|..+       .+..+...|.......++..+++.+...+.+
T Consensus       338 ~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        338 PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888775       3334556677777788888898888887765

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=94.23  E-value=0.39  Score=30.45  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=16.8

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHN   30 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~   30 (87)
                      .+..|..| +.|+++.++......
T Consensus       310 ~~~~~~~~-~~~g~~~~~~~~~~~  332 (377)
T PRK11102        310 AVILDEFP-HMAGTASSLAGTLRF  332 (377)
T ss_pred             HHHhcccc-ccchHHHHHHHHHHH
Confidence            45677777 789999988766543

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=93.81  E-value=0.46  Score=30.72  Aligned_cols=59  Identities=17%  Similarity=0.276  Sum_probs=37.5

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL   69 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~   69 (87)
                      .++++.+|.+.+    ++......++...++.+.+.+.+ .++...|.+.+.+++++.++.+..
T Consensus       330 ~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~  389 (402)
T PRK11902        330 ALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLM  389 (402)
T ss_pred             HhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            456666675544    44444445555555667777777 777777887777777776665443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=93.79  E-value=0.72  Score=30.69  Aligned_cols=39  Identities=13%  Similarity=0.276  Sum_probs=35.8

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ++.+|.-|.+.|++..++...+.-++..++..+...+.+
T Consensus       112 ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~  150 (403)
T PF03209_consen  112 ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLD  150 (403)
T ss_pred             HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            678999999999999999999999999999999888777

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=93.24  E-value=0.57  Score=30.22  Aligned_cols=33  Identities=9%  Similarity=-0.218  Sum_probs=28.1

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047378           14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW   46 (87)
Q Consensus        14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~   46 (87)
                      +.+.|++..+.......++..+++.+...+.+.
T Consensus       338 ~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~  370 (406)
T PRK15402        338 SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLG  370 (406)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            348899999999999999999999888887773

>TIGR00788 fbt folate/biopterin transporter

Probab=93.17  E-value=0.2  Score=33.45  Aligned_cols=67  Identities=16%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             hhhhcccCCcchHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            6 SVIMAEIFPINIKGSA---GSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         6 ~~~~~E~fp~~~R~~~---~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      -.+..|..+ +.+..+   +++......++..+++.+...+.+ .++...|++.+...++. .+...+.+|.+
T Consensus       142 da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~  212 (468)
T TIGR00788       142 DSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR  212 (468)
T ss_pred             HHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence            356778887 554443   334444445788888888888887 57888888888877776 44445578864

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK10133 L-fucose transporter; Provisional

Probab=93.10  E-value=1.3  Score=29.37  Aligned_cols=39  Identities=10%  Similarity=-0.002  Sum_probs=29.2

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFM   43 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l   43 (87)
                      ...++.|..|.+.|.+.+++......++..+++.+...+
T Consensus       138 ~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l  176 (438)
T PRK10133        138 ANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888888787788888888888888888775543

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=92.96  E-value=0.29  Score=33.89  Aligned_cols=60  Identities=18%  Similarity=0.362  Sum_probs=47.0

Q ss_pred             hhhcccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLH-NCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV   66 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~   66 (87)
                      +|++-.-|++.|++++++..... .++-..+.++.+.+.. .+....|..+++.+++..++.
T Consensus       482 sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~  543 (618)
T KOG3762|consen  482 SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALF  543 (618)
T ss_pred             HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999998775 5666677777777666 677777888877777766653

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=92.68  E-value=0.95  Score=30.82  Aligned_cols=42  Identities=12%  Similarity=0.135  Sum_probs=32.2

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLH-NCGNWIVTCTFHFM   43 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~-~~~~~~~~~~~~~l   43 (87)
                      .|+..+.++++.|.|.|++.+|...... .+++.++..+....
T Consensus       395 sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        395 DPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             ChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5888899999999999999999986543 46666665555443

>PRK10091 MFS transport protein AraJ; Provisional

Probab=92.66  E-value=1.2  Score=28.54  Aligned_cols=59  Identities=12%  Similarity=-0.009  Sum_probs=37.6

Q ss_pred             hhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHh
Q 047378            8 IMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         8 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      ...+..|.+.++.+  .......+++.++|.+...+.+  .++...+.+.+............
T Consensus       314 ~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (382)
T PRK10091        314 LLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL  374 (382)
T ss_pred             HHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence            34455565555544  3455678999999999999888  34556666665555554444433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=92.61  E-value=1.3  Score=30.04  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=48.4

Q ss_pred             hhhcccCCcchH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH--hh-------chHH
Q 047378            7 VIMAEIFPINIK--------------------------GSAGSLVILLHNCGNWIVTCTFHFMME--WS-------RTGA   51 (87)
Q Consensus         7 ~~~~E~fp~~~R--------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~-------~~~~   51 (87)
                      ++.+|+-+.+.+                          ++..+.....+.+++.+.-.+...+..  ..       .+..
T Consensus       149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~  228 (477)
T PF11700_consen  149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA  228 (477)
T ss_pred             HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence            567777777777                          888888888888888877776555433  22       2455


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCC
Q 047378           52 FSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      +.+.+++.++..+-..+.+||.++
T Consensus       229 ~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  229 FLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCC
Confidence            666777777666666677787754

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=92.53  E-value=0.61  Score=30.05  Aligned_cols=62  Identities=13%  Similarity=0.084  Sum_probs=45.9

Q ss_pred             chhhhcccCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPIN---IKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFV   66 (87)
Q Consensus         5 ~~~~~~E~fp~~---~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~   66 (87)
                      ...+.+|.|+.+   .|.++..+.+.+.++++.++....+++.+ .++...|.+-++..+++.+..
T Consensus        54 i~~~~~dq~~~~~~~~~~~~F~~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f  119 (372)
T PF00854_consen   54 ISPFGADQYDEDDDSRRDSFFNWFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF  119 (372)
T ss_dssp             HHHHHHHCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhhhhhhHHHHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence            345677888776   57778888899999999999999999888 667667766666666555543

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=92.40  E-value=0.085  Score=35.75  Aligned_cols=63  Identities=16%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             ccchhhhcccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINI--KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLF   65 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   65 (87)
                      |..-.+.+|+||.+.  |+.+.++.+...++++.+.|.+.+++.+ .+++..|-.-+.-...+.+.
T Consensus       136 ~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~  201 (498)
T COG3104         136 PNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVI  201 (498)
T ss_pred             ccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Confidence            445577889998754  8889999999999999999999999998 55555555444444443333

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=92.08  E-value=0.99  Score=30.45  Aligned_cols=69  Identities=16%  Similarity=0.209  Sum_probs=47.2

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhchHHHHHHHHHHHHHHHHHHhhcc
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-----------WSRTGAFSIFWVICIVAVLFVAFLVP   71 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~p   71 (87)
                      |....++.+..|.+.++.++|+......+++.++..+......           ....+.|...++..++..+..+...|
T Consensus       398 ~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~~~  477 (489)
T PRK10207        398 ALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALMVP  477 (489)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677888999999999999998888888888777654321           12345566666666666665544333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=91.93  E-value=0.24  Score=30.80  Aligned_cols=35  Identities=20%  Similarity=0.252  Sum_probs=30.4

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVT   37 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~   37 (87)
                      +....+..|..|.+.|++..|+......+++.++|
T Consensus       318 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  318 PILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            34567889999999999999999999999888876

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=91.83  E-value=1.1  Score=30.38  Aligned_cols=54  Identities=20%  Similarity=0.378  Sum_probs=38.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHHhhc
Q 047378           17 IKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVAFLV   70 (87)
Q Consensus        17 ~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~~   70 (87)
                      .-+...|+....+.+++++.|..+....+ . .....|+.+....+++....|.+.
T Consensus       399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y  454 (462)
T PRK15034        399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVY  454 (462)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567777788888888899988887776 3 345567777777777777766543

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=91.41  E-value=1.2  Score=28.65  Aligned_cols=46  Identities=2%  Similarity=0.040  Sum_probs=24.5

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIF   55 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~   55 (87)
                      ....++.|.+.|+   |...........+++.+.+.+.+ .+......+.
T Consensus       313 ~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~  359 (392)
T PRK10473        313 AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLI  359 (392)
T ss_pred             HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence            3445566765554   44444455666666766666665 4433333333

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=91.20  E-value=3.4  Score=28.03  Aligned_cols=65  Identities=11%  Similarity=0.005  Sum_probs=38.1

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ++-.|..|+..|.+-+-.. ..-.++..+...+.-.... .+|++ +++.....+..+....+.+||+
T Consensus       188 ~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~-~l~~~~~pl~~~a~f~~w~~ES  253 (528)
T KOG0253|consen  188 AIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRY-LLFTSSTPLMFAARFLVWVYES  253 (528)
T ss_pred             HHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHhHHHHHHHHHhhcccC
Confidence            6678999999998877665 3333444444444443344 44444 4444444444444555668997

>PRK11043 putative transporter; Provisional

Probab=90.41  E-value=1.3  Score=28.56  Aligned_cols=38  Identities=16%  Similarity=0.178  Sum_probs=29.9

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ....|..| +.|+++.|+....+..++..++...+.+.+
T Consensus       319 ~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~  356 (401)
T PRK11043        319 AQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALIS  356 (401)
T ss_pred             HHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            34556666 579999999998888888888888877765

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=90.29  E-value=2.1  Score=29.13  Aligned_cols=67  Identities=22%  Similarity=0.322  Sum_probs=46.2

Q ss_pred             hhhcccCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            7 VIMAEIFP-INIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         7 ~~~~E~fp-~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ++.+|+-+ .+.|.+..+.-.....+++.+..++.+.+.+ .       ++.....+++++..+..+++++...|.
T Consensus       135 al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER  210 (467)
T COG2211         135 ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKER  210 (467)
T ss_pred             hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34455543 4569999999998889999999998887766 2       233445566666666666776666553

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=90.26  E-value=2  Score=27.86  Aligned_cols=59  Identities=8%  Similarity=0.056  Sum_probs=40.2

Q ss_pred             hhhcccCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINI-KGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLF   65 (87)
Q Consensus         7 ~~~~E~fp~~~-R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   65 (87)
                      ....|.-|.+. |+++.++......++..++..+...+...+....+.+.....++++.+
T Consensus       316 ~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (393)
T PRK11195        316 ALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAM  375 (393)
T ss_pred             HHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            45567766665 799999999888888888888887665566555555544444444443

>PRK09848 glucuronide transporter; Provisional

Probab=90.25  E-value=2.3  Score=27.98  Aligned_cols=41  Identities=22%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             chhhhcccCCc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPI-------NIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         5 ~~~~~~E~fp~-------~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      .+++.+|.-|.       +.++...|+......++..+++.+...+.+
T Consensus       340 ~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        340 MWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666654       356888888888888999988888777654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=89.91  E-value=4.1  Score=27.18  Aligned_cols=67  Identities=6%  Similarity=-0.025  Sum_probs=39.8

Q ss_pred             hhhcccC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            7 VIMAEIF-PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         7 ~~~~E~f-p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ++.+|+- ..+.|.+..+.-+....+++.+++.+...+.. .       ++.....+++++.++..+..++..+|.
T Consensus       129 al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~  204 (473)
T PRK10429        129 SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEV  204 (473)
T ss_pred             hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceec
Confidence            6678988 58899999988776666666666554433322 1       122334455555555555555545664

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=89.61  E-value=2.4  Score=29.00  Aligned_cols=67  Identities=10%  Similarity=0.031  Sum_probs=47.9

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hchHHHHHHHHHHHHHHHHHHhhccc
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEW--------------SRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      .|++...-.+.|.++++.......++..++|.+.+.+...              ....+-|+.+.++++..++..+++.|
T Consensus       152 ~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E  231 (488)
T KOG2325|consen  152 AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE  231 (488)
T ss_pred             HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence            6778888888899999888876666666666665544321              12244678888888888888887777


Q ss_pred             C
Q 047378           73 T   73 (87)
Q Consensus        73 t   73 (87)
                      .
T Consensus       232 ~  232 (488)
T KOG2325|consen  232 V  232 (488)
T ss_pred             c
Confidence            4

>TIGR01272 gluP glucose/galactose transporter

Probab=88.75  E-value=1.6  Score=27.57  Aligned_cols=49  Identities=12%  Similarity=0.043  Sum_probs=33.9

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFS   53 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~   53 (87)
                      |..++...+.+|.+ .+++.++. .++.+++.+.|.+.+.+.+ .+....|+
T Consensus       249 P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~  298 (310)
T TIGR01272       249 PTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA  298 (310)
T ss_pred             HHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence            34455666777764 34556664 5677889999999999888 56666665

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=88.71  E-value=4.7  Score=26.20  Aligned_cols=57  Identities=11%  Similarity=0.144  Sum_probs=38.2

Q ss_pred             hhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHH
Q 047378            8 IMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLF   65 (87)
Q Consensus         8 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~   65 (87)
                      ++.+..| +.+++..+.......++..+++.+...+.+ .+....+...+.+..+..+.
T Consensus       329 ~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~  386 (394)
T PRK10213        329 WITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL  386 (394)
T ss_pred             HHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence            4566666 445566677777778899999999999988 55555555554444444333

>PTZ00207 hypothetical protein; Provisional

Probab=86.25  E-value=3.7  Score=28.76  Aligned_cols=70  Identities=6%  Similarity=0.047  Sum_probs=52.6

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hh-------------chHHHHHHHHHHHHHHHHHHh
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIV-TCTFHFMME-WS-------------RTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~-~~~~~~l~~-~~-------------~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      +....++|+|- |.-++-..+....+-++..+. .++++.+++ ..             ...+|++++++++.+.+....
T Consensus       472 ~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        472 TIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             HHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            44578999999 888888888888887777766 557777775 11             345699999999999988665


Q ss_pred             hcccCC
Q 047378           69 LVPETK   74 (87)
Q Consensus        69 ~~pet~   74 (87)
                      ..-+||
T Consensus       551 l~~R~r  556 (591)
T PTZ00207        551 VHLQYR  556 (591)
T ss_pred             eeeehH
Confidence            555554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=86.01  E-value=7  Score=25.11  Aligned_cols=57  Identities=18%  Similarity=0.138  Sum_probs=36.3

Q ss_pred             hhhcccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILL-HNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVL   64 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   64 (87)
                      .+..+. +.+.+++.++..... ...+..+++.+.+.+.+......++..+++.+.+.+
T Consensus       316 ~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~~~  373 (382)
T PRK11128        316 RYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPALF  373 (382)
T ss_pred             HHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            455666 445567888877644 345668889999999884334566666655554433

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=85.48  E-value=8.7  Score=25.69  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=47.7

Q ss_pred             hcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378            9 MAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         9 ~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      .++ .-++.++.+.|+.....+++...+..+-..+.+ .+.....++-+...+.+.++...
T Consensus       325 ~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         325 LAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             hcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence            444 446889999999999999999999999999998 67777777777777777766544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=85.43  E-value=6.7  Score=25.19  Aligned_cols=41  Identities=27%  Similarity=0.349  Sum_probs=31.0

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ....+..|.+| +.++++.++......++..+++.+...+..
T Consensus       319 ~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~  359 (394)
T PRK11652        319 LATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ  359 (394)
T ss_pred             HHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            34456678887 578999888888888888888887766554

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=84.99  E-value=8.6  Score=25.20  Aligned_cols=46  Identities=11%  Similarity=-0.022  Sum_probs=32.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Q 047378           17 IKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVA   62 (87)
Q Consensus        17 ~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   62 (87)
                      .++++.++..........+++....++...+....+...+.+..+.
T Consensus       344 ~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  389 (413)
T PRK15403        344 PKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVI  389 (413)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3788888888888888888888888776666566665555444443

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=84.70  E-value=3.2  Score=27.25  Aligned_cols=41  Identities=17%  Similarity=0.205  Sum_probs=36.8

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      -|-.++-+.|.+.-+++.|+..+.++++-.+.+.+...+.+
T Consensus       373 lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d  413 (459)
T KOG4686|consen  373 LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIAD  413 (459)
T ss_pred             HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeec
Confidence            35667778899999999999999999999999999999887

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=83.71  E-value=2.9  Score=27.47  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=33.7

Q ss_pred             hhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            7 VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         7 ~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ....|..|.+.|+++.|+......+++.+++.+...+.+
T Consensus       371 ~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~  409 (485)
T TIGR00711       371 TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILT  409 (485)
T ss_pred             HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677899999999999999999999999988887776

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=82.83  E-value=9.8  Score=27.06  Aligned_cols=55  Identities=24%  Similarity=0.263  Sum_probs=39.2

Q ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Q 047378           11 EIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLF   65 (87)
Q Consensus        11 E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   65 (87)
                      .-.|.+.|+.+.++......+++.++..+...-.....+.-|..++.+.++..++
T Consensus       592 ~~~p~~mks~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  646 (654)
T TIGR00926       592 SQAPPNMKSVLQALWLLTVAIGNLIVVVIAEFENFSVQAAEFFLFASLMLVVMAI  646 (654)
T ss_pred             HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHH
Confidence            4568999999999999999999999888877644334444565555555554443

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=82.79  E-value=3  Score=28.44  Aligned_cols=38  Identities=18%  Similarity=0.113  Sum_probs=31.5

Q ss_pred             hhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047378            8 IMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         8 ~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      +.+-.||.+.|+.+..++...+-++..++..+-|.+..
T Consensus       164 iA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~  201 (480)
T KOG2563|consen  164 IAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP  201 (480)
T ss_pred             HHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence            45567999999999999999988888888777776654

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=82.58  E-value=0.22  Score=33.88  Aligned_cols=62  Identities=13%  Similarity=0.236  Sum_probs=50.7

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHH
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFV   66 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~   66 (87)
                      ...++.|+.+.+.-+.+.|+...+..++..++|.+...+.+ .+ +...|...+...+++....
T Consensus       409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~  472 (509)
T KOG2504|consen  409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLL  472 (509)
T ss_pred             HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHH
Confidence            34578899999999999999999999999999999998888 44 6666777777777766553

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=82.03  E-value=16  Score=26.06  Aligned_cols=61  Identities=18%  Similarity=0.184  Sum_probs=43.1

Q ss_pred             hhhhcccCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHH
Q 047378            6 SVIMAEIFPIN---IKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFV   66 (87)
Q Consensus         6 ~~~~~E~fp~~---~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~   66 (87)
                      -+...|.|+.+   .|.....+.+...++++.+++.+.+++.+ .       +++..|.+.++..+++.+..
T Consensus       107 saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf  178 (654)
T TIGR00926       107 SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVF  178 (654)
T ss_pred             hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHH
Confidence            35566777643   47888999999999999999999998874 2       25556666655555555543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=81.45  E-value=10  Score=25.31  Aligned_cols=42  Identities=12%  Similarity=0.263  Sum_probs=28.3

Q ss_pred             cchhhhccc-----CCcchHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEI-----FPINIKGSAG--SLVILLHNCGNWIVTCTFHFMME   45 (87)
Q Consensus         4 ~~~~~~~E~-----fp~~~R~~~~--~~~~~~~~~~~~~~~~~~~~l~~   45 (87)
                      ..+++++|.     +++..|..|.  |.......++..+++.+.+.+.+
T Consensus       344 ~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        344 LQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             HHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678888     4455555554  55555667888888888877665

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=81.16  E-value=12  Score=25.10  Aligned_cols=56  Identities=9%  Similarity=0.061  Sum_probs=40.6

Q ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHHHHHHhh
Q 047378           14 PINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-SRTGAFSIFWVICIVAVLFVAFL   69 (87)
Q Consensus        14 p~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~~~~~~~~   69 (87)
                      .++.-++-.+++..++++.+..+|.+++++-| . ++......++...+...+..+..
T Consensus       327 ~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         327 DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            34455667778888889999999999999999 4 44455666666666666665543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=80.36  E-value=2.1  Score=28.67  Aligned_cols=58  Identities=16%  Similarity=0.167  Sum_probs=34.9

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAV   63 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~   63 (87)
                      .-++...+..|.+  ....|....+...++.+.|.+.+.+.+ .+....+......|.+..
T Consensus       344 TIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         344 TIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             HHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            3344555555622  333444445677889999999999998 555555554444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	87
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		3e-06

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 7/83 (8%)
Query: 7   VIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWS------RTG-AFSIFWVIC 59
           V+++EIFP  I+G A ++ +      N+ V+ TF  M + S        G ++ I+  + 
Sbjct: 393 VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMG 452
Query: 60  IVAVLFVAFLVPETKGRTLEEIQ 82
           ++A LF+   VPETKG+TLEE++
Sbjct: 453 VLAALFMWKFVPETKGKTLEELE 475
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.82
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.43
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.42
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.39
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.38
2xut_A	524	Proton/peptide symporter family protein; transport	98.22
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.09
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.06
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.95
2xut_A	524	Proton/peptide symporter family protein; transport	97.79
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.64
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.14
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.34

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.82  E-value=5.3e-20  Score=117.55  Aligned_cols=87  Identities=31%  Similarity=0.476  Sum_probs=77.1

Q ss_pred             CCccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            1 MAGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-------WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         1 ~~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ++|++|.+.+|+||++.|++++|++..++++++++++.++|.+.+       .+....|++++++++++.++.++++|||
T Consensus       387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            367889999999999999999999999999999999999987754       2345678999999999999999999999


Q ss_pred             CCCCHHHHHHHhhC
Q 047378           74 KGRTLEEIQISITK   87 (87)
Q Consensus        74 ~~~~~~~~~~~~~~   87 (87)
                      ||+++||+|+.+++
T Consensus       467 kg~tLeei~~~f~~  480 (491)
T 4gc0_A          467 KGKTLEELEALWEP  480 (491)
T ss_dssp             TTCCHHHHGGGTC-
T ss_pred             CCCCHHHHHHHhCC
Confidence            99999999988753

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.43  E-value=2.7e-07  Score=58.33  Aligned_cols=73  Identities=10%  Similarity=0.107  Sum_probs=59.2

Q ss_pred             chhhhcccCCcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378            5 PSVIMAEIFPINIKGSAGSLV-ILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRT   77 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~-~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   77 (87)
                      .+.+++|.+|++.|+++.++. ....++++.++|.+.+.+.+ .+....|.+.+++.+++.+..++..||++..+
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            357899999999999999996 66778999999999998887 56667788888888887777666678766543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.42  E-value=7.4e-07  Score=56.09  Aligned_cols=72  Identities=19%  Similarity=0.171  Sum_probs=61.4

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      |....+++|.+|.+.|+++.++......++..+++.+...+.+ .+ ++..|++.+++.++..++.++..||++
T Consensus       138 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~  211 (451)
T 1pw4_A          138 PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTP  211 (451)
T ss_dssp             HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSS
T ss_pred             chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence            3456789999999999999999999999999999999988777 66 888899988888887777777777754

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.39  E-value=1.2e-07  Score=60.56  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=58.9

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETKGRT   77 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~   77 (87)
                      .|..+.+..|.+|.+.|++++|+......+++.+++.+.+.+.+.+....|.+++++.++..++.++..++.+++.
T Consensus       404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (491)
T 4aps_A          404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQGLM  479 (491)
T ss_dssp             TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--------
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567789999999999999999999999999999999988877766777888888888888887777677766543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.38  E-value=2.5e-07  Score=58.28  Aligned_cols=65  Identities=17%  Similarity=0.299  Sum_probs=56.0

Q ss_pred             chhhhcccCCcchHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378            5 PSVIMAEIFPINIKGSAGSLVILLHNC-GNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL   69 (87)
Q Consensus         5 ~~~~~~E~fp~~~R~~~~~~~~~~~~~-~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~   69 (87)
                      .+.+..|.+|++.|+++.|+......+ +..+++.+.+.+.+ .+....|++.+++.+++.++..+.
T Consensus       367 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          367 IGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             HHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999 99999999999998 677788888888888777765553

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.22  E-value=4.2e-07  Score=58.57  Aligned_cols=79  Identities=15%  Similarity=0.026  Sum_probs=51.4

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--c---------hHHHHHHHHHHHHHHHHHHhhc
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS--R---------TGAFSIFWVICIVAVLFVAFLV   70 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~--~---------~~~~~~~~~~~~~~~~~~~~~~   70 (87)
                      |..+.+.+|..|++.|++++|+......+++.+++.+.+.+.+ .+  +         ...|++++++.++..++.++..
T Consensus       424 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (524)
T 2xut_A          424 ATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYA  503 (524)
T ss_dssp             HHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999999999988765 21  1         2236777777777777766666


Q ss_pred             ccCCCCCHHHH
Q 047378           71 PETKGRTLEEI   81 (87)
Q Consensus        71 pet~~~~~~~~   81 (87)
                      ++.++++.++.
T Consensus       504 ~~~~~~~~~~~  514 (524)
T 2xut_A          504 RSYQMQDHYRQ  514 (524)
T ss_dssp             -----------
T ss_pred             HHhccchhhhh
Confidence            77766654443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.09  E-value=6.7e-07  Score=55.35  Aligned_cols=72  Identities=14%  Similarity=0.236  Sum_probs=59.8

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKG   75 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~   75 (87)
                      ....+++|.+|.+.|+++.++......++..+++.+...+.+ .+++..+++.++..++..+...+..||++.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRP  180 (375)
T ss_dssp             HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred             hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence            445788999999999999999999999999999999988777 678888888888877777656666788654

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.06  E-value=2.7e-05  Score=49.74  Aligned_cols=67  Identities=16%  Similarity=0.128  Sum_probs=52.8

Q ss_pred             ccchhhhcccCCcch--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhh
Q 047378            3 GLPSVIMAEIFPINI--KGSAGSLVILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFL   69 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~--R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~   69 (87)
                      |....+++|.+|.+.  |+++.++......++..+++.+...+.+ .++++.|++.++..++..+...+.
T Consensus       127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~  196 (491)
T 4aps_A          127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFG  196 (491)
T ss_dssp             HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            345678999999998  7777777778889999999999999888 778888888777666666554433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.95  E-value=3.7e-05  Score=48.22  Aligned_cols=72  Identities=11%  Similarity=0.119  Sum_probs=54.6

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--------------------------chHHHHHHH
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMM-EWS--------------------------RTGAFSIFW   56 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~--------------------------~~~~~~~~~   56 (87)
                      ....+++|.+|.+.|+++.++......++..+++.+...+. ...                          +++.|++.+
T Consensus       137 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  216 (438)
T 3o7q_A          137 AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIV  216 (438)
T ss_dssp             HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHH
Confidence            45678999999999999999999999999999999988887 322                          566776776


Q ss_pred             HHHHHHHHHHHh-hcccCCC
Q 047378           57 VICIVAVLFVAF-LVPETKG   75 (87)
Q Consensus        57 ~~~~~~~~~~~~-~~pet~~   75 (87)
                      ....+..+...+ ..||++.
T Consensus       217 ~~~~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          217 AIVLLVALLIMLTKFPALQS  236 (438)
T ss_dssp             HHHHHHHHHHHHCCCCCCTT
T ss_pred             HHHHHHHHHHHHHcCCcccc
Confidence            666665554433 3466543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.79  E-value=6.2e-05  Score=48.45  Aligned_cols=66  Identities=23%  Similarity=0.318  Sum_probs=51.2

Q ss_pred             ccchhhhcccCCcchHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHh
Q 047378            3 GLPSVIMAEIFPINIKGSAGSL---VILLHNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAF   68 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~---~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   68 (87)
                      |....+++|.+|.+.|++..+.   ......++..+++.+...+.+ .+++..|++.++..++..+...+
T Consensus       128 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          128 PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            3456789999999999876666   777888889999998888887 67778888877776666555443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.64  E-value=0.00028  Score=44.94  Aligned_cols=71  Identities=23%  Similarity=0.265  Sum_probs=44.9

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h-------hchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-W-------SRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      +....|++|..|++.|++..++.......+...+......... .       .++...........+..++..++.||+
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peS  223 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPES  223 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCC
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCC
Confidence            3456899999999999999999887766666666655554433 1       122223333333344444455667987

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.14  E-value=0.0013  Score=41.14  Aligned_cols=58  Identities=16%  Similarity=0.021  Sum_probs=44.4

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh-chHHHHHHHHHHHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME-WS-RTGAFSIFWVICIVA   62 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~~~   62 (87)
                      |..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+ .+ ....|.+.+++.++.
T Consensus       366 ~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  425 (438)
T 3o7q_A          366 PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI  425 (438)
T ss_dssp             HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            44567789999987 999999887 677999999999999988 56 666666654444443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.34  E-value=0.0022  Score=39.52  Aligned_cols=46  Identities=26%  Similarity=0.297  Sum_probs=39.4

Q ss_pred             CccchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047378            2 AGLPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMMEWSR   48 (87)
Q Consensus         2 ~~~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   48 (87)
                      .|....+..|.+| +.|+++.|+......++..+++.+.+.+.+...
T Consensus       309 ~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  354 (375)
T 2gfp_A          309 FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ  354 (375)
T ss_dssp             SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred             hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            4566788999999 899999999999999999999999888877433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.73
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.44
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.18
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	94.16

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=4.2e-08  Score=58.62  Aligned_cols=79  Identities=10%  Similarity=0.057  Sum_probs=66.0

Q ss_pred             ccchhhhcccCCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhcccCCCCCHHH
Q 047378            3 GLPSVIMAEIFPINIKGSAGSLVILL-HNCGNWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPETKGRTLEE   80 (87)
Q Consensus         3 ~~~~~~~~E~fp~~~R~~~~~~~~~~-~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pet~~~~~~~   80 (87)
                      +....+++|.+|++.|+++.|+.... ..++..+++.+.+.+.+ .+....+++.+++.++..++..+.+++.+..+.++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            34567899999999999999987654 56889999999999998 77788899999999988888888888888777755


Q ss_pred             H
Q 047378           81 I   81 (87)
Q Consensus        81 ~   81 (87)
                      .
T Consensus       411 ~  411 (417)
T d1pv7a_         411 R  411 (417)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=8.2e-08  Score=58.59  Aligned_cols=69  Identities=17%  Similarity=0.292  Sum_probs=54.9

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHHHHHhhccc
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCG-NWIVTCTFHFMME-WSRTGAFSIFWVICIVAVLFVAFLVPE   72 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~-~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~pe   72 (87)
                      ..+.+.+|.+|++.|+++.|+....++++ ...++.+.+.+.+ .++...++++++..+++.++.....++
T Consensus       363 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         363 LIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35678899999999999999998888875 4567888888888 777788888888777777766655444

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=6e-07  Score=54.67  Aligned_cols=70  Identities=20%  Similarity=0.150  Sum_probs=57.0

Q ss_pred             cchhhhcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHHHHHHhhcccC
Q 047378            4 LPSVIMAEIFPINIKGSAGSLVILLHNCGNWIVTCTFHFMME--WSRTGAFSIFWVICIVAVLFVAFLVPET   73 (87)
Q Consensus         4 ~~~~~~~E~fp~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~pet   73 (87)
                      ....+++|.+|.+.|++++++......++..+++.+...+..  .+++..+++.+.+.++..++.++..+|+
T Consensus       136 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         136 PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            345789999999999999999999999999999988877666  4567778888888888777777766554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.071  Score=30.77  Aligned_cols=57  Identities=7%  Similarity=-0.010  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHhhcccCC
Q 047378           18 KGSAGSLVILLHNCGNWIVTCTFHFMMEWSRTGAFSIFWVICIVAVLFVAFLVPETK   74 (87)
Q Consensus        18 R~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pet~   74 (87)
                      +....+........+..+++.+...+.+..++..+........+......+..+|.+
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (417)
T d1pv7a_         136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAP  192 (417)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSC
T ss_pred             hHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccc
Confidence            334455555566677777888877777766677777776667776666666666654