Citrus Sinensis ID: 047398

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240------
Protein Sequence
MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRKDDANDGTNGVELPDQPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGSEYDDDGESSSGKNINFLN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccEEEcccccccEEEEEEEEEEcccccccccccccEEEEEEccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEEEcccccccccccccEEEEEcccccccccccccccccccccEEcccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEEcccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdnfqfvrdgvtrlppgfrfqptddELVFQYLKckvfssplpapiiphiniykydpwdlpgnleqeryffsnneakypngnrinratasgywkatgldkqiLSSSRINQMLMGMKKTLVFyrgkaphesrtdWIMHEYRLVTAatnqpssrnyskEMENWVICKIFMkkrtrkddandgtngvelpdqpqprfydfmmrdrigscaatsscsstssyrgisgissngseydddgesssgkninfln
Flexible Loop (DISEMBL)
mdnfqfvrdgvtrlppgfrfqpTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYFFSNNeakypngnriNRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAatnqpssrnyskemeNWVICKIFMKKrtrkddandgtngvelpdqpqprFYDFMMRDRIGSCaatsscsstssyrgisgissngseydddgesssgkninfln
Low Complexity Region (SEG)
MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRKDDANDGTNGVELPDQPQPRFYDFMMRDRIgscaatsscsstssyrgisgissngseydddgesssgKNINFLN
Disordered region (IsUnstruct)
*****FVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAA***********EMENWVICKIFMK*************************YDFM*************************************************
Disordered Region (DISOPRED)
**************PPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVT****************NWVICKIF****************************************************************************NFL*
Disordered Region (DISEMBL)
MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRKDDANDGTNGVELPDQPQPRFYDFMMRDRIGSC**************ISGISSN************GKNINFLN
Disordered Region (DISPRO)
************RLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTA**********SKEMENWVICKIFMKKR****************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRKDDANDGTNGVELPDQPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGSEYDDDGESSSGKNINFLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	246	2.2.26 [Sep-21-2011]
A0SPJ6	396	NAC transcription factor	N/A	no	0.873	0.542	0.422	3e-45
A0SPJ4	405	NAC transcription factor	N/A	no	0.947	0.575	0.408	3e-44
A0SPJ9	402	NAC transcription factor	N/A	no	0.699	0.427	0.502	4e-44
Q8H4S4	425	NAC transcription factor	yes	no	0.686	0.397	0.5	9e-44
A2YMR0	425	NAC transcription factor	N/A	no	0.686	0.397	0.494	2e-43
A0SPJ3	405	NAC transcription factor	N/A	no	0.723	0.439	0.467	8e-43
D2SMN4	406	NAC transcription factor	N/A	no	0.711	0.431	0.473	9e-43
Q8GY42	323	NAC transcription factor	no	no	0.654	0.498	0.505	4e-42
Q52QH4	318	NAC domain-containing pro	no	no	0.621	0.481	0.515	5e-42
A0SPJ8	406	NAC transcription factor	N/A	no	0.711	0.431	0.468	8e-42

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/246 (42%), Positives = 139/246 (56%), Gaps = 31/246 (12%)

Query: 13  RLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYF 69
            LPPGFRF PTD+ELV  YLK K    PLP  II  +++YK+DPW+LP      EQE YF
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 70  FSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHES 129
           FS  + KYPNG R NRA  SGYWKATG DK IL+S    +  +G+KK LVFYRGK P   
Sbjct: 87  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASG-CGREKVGVKKALVFYRGKPPKGL 145

Query: 130 RTDWIMHEYRLV----TAATNQP-----SSRNYSKEMENWVICKIFMKKRTRKDDANDGT 180
           +T+WIMHEYRL     +A T++P      SR+ S  +++WV+C+I+  K+  K  A D  
Sbjct: 146 KTNWIMHEYRLTDASSSATTSRPPPVTGGSRSASLRLDDWVLCRIY--KKINKAAAGDQQ 203

Query: 181 NGVELPDQPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGSEYDDDGESSSGK 240
             +E  D          + D + +    ++        G++G  ++GS YD         
Sbjct: 204 RSMECEDS---------VEDAVTAYPLYATA-------GMTGAGAHGSNYDSLLHHQDSH 247

Query: 241 NINFLN 246
             NFL+
Sbjct: 248 EDNFLD 253

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.
Triticum durum (taxid: 4567)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  178 bits (452), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 107/262 (40%), Positives = 142/262 (54%), Gaps = 29/262 (11%)

Query: 8   RDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---E 64
           R     LPPGFRF PTD+ELV  YLK K   +PLP  II  +++YK+DPW+LP      E
Sbjct: 28  RGSAPELPPGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGE 87

Query: 65  QERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQML---MGMKKTLVFY 121
           QE YFFS  + KYPNG R NRA  SGYWKATG DK IL+S     ++   +G+KK LVFY
Sbjct: 88  QEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFY 147

Query: 122 RGKAPHESRTDWIMHEYRLV-----TAATNQP------SSRNYSKEMENWVICKIFMKKR 170
           RGK P   +T+WIMHEYRL      T ATN+P      S    S  +++WV+C+I+  K+
Sbjct: 148 RGKPPKGLKTNWIMHEYRLTDASGSTTATNRPPPVTGGSRAAASLRLDDWVLCRIY--KK 205

Query: 171 TRKDDANDGTNGVELPDQPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGSEY 230
             K  A D     E  D  +     + +    G    T + +  S+Y   S +    S +
Sbjct: 206 INKAAAGDQQRNTECEDSVEDAVTAYPLYATAG---MTGAGAHGSNYASPSLLHHQDSHF 262

Query: 231 -------DDDGESSSGKNINFL 245
                  DD G S+   +++ L
Sbjct: 263 LDGLFTADDAGLSAGATSLSHL 284

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  177 bits (450), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 94/187 (50%), Positives = 118/187 (63%), Gaps = 15/187 (8%)

Query: 13  RLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYF 69
            LPPGFRF PTD+ELV  YLK K    PLP  II  +++YK+DPW+LP      EQE YF
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 70  FSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHES 129
           FS  + KYPNG R NRA  SGYWKATG DK IL+S    +  +G+K  LVFYRGK P   
Sbjct: 87  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASG-CGREKVGVKXALVFYRGKPPKGL 145

Query: 130 RTDWIMHEYRLV----TAATNQP-----SSRNYSKEMENWVICKIFMKKRTRKDDANDGT 180
           +T+WIMHEYRL     +AAT++P      SR  S  +++WV+C+I+  K+  K  A D  
Sbjct: 146 KTNWIMHEYRLTDASSSAATSRPPPVTGGSRAASLRLDDWVLCRIY--KKINKAAAADQQ 203

Query: 181 NGVELPD 187
             +E  D
Sbjct: 204 RSMECED 210

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  177 bits (448), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 96/192 (50%), Positives = 117/192 (60%), Gaps = 23/192 (11%)

Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTD+ELV  YLK K  S PLP  II  +++YK+DPWDLP      EQE YFF
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKANFGEQEWYFF 88

Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           S  + KYPNG R NRA  SGYWKATG DK I+SS    + + G+KK LVFYRGK P   +
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKV-GVKKALVFYRGKPPKGVK 147

Query: 131 TDWIMHEYRL--------VTAATNQP-------SSRNYSKEMENWVICKIFMKKRTRKDD 175
           T+WIMHEYRL          A T +P       S    S  +++WV+C+I+  K+T K  
Sbjct: 148 TNWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAVSLRLDDWVLCRIY--KKTNK-- 203

Query: 176 ANDGTNGVELPD 187
           A  G   +E  D
Sbjct: 204 AGAGQRSMECED 215

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  176 bits (445), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 117/192 (60%), Gaps = 23/192 (11%)

Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTD+ELV  YLK K  S PLP  II  +++YK+DPW+LP      EQE YFF
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKANFGEQEWYFF 88

Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           S  + KYPNG R NRA  SGYWKATG DK I++S    + + G+KK LVFYRGK P   +
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKV-GVKKALVFYRGKPPKGVK 147

Query: 131 TDWIMHEYRL--------VTAATNQP-------SSRNYSKEMENWVICKIFMKKRTRKDD 175
           T+WIMHEYRL          A T QP       S    S  +++WV+C+I+  K+T K  
Sbjct: 148 TNWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAVSLRLDDWVLCRIY--KKTNK-- 203

Query: 176 ANDGTNGVELPD 187
           A  G   +E  D
Sbjct: 204 AGAGQRSMECED 215

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|A0SPJ3|NAMA1_TRIDB NAC transcription factor NAM-A1 OS=Triticum durum GN=NAM-A1 PE=2 SV=1

 Score =  173 bits (439), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 92/197 (46%), Positives = 116/197 (58%), Gaps = 19/197 (9%)

Query: 8   RDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---E 64
           R     LPPGFRF PTD+ELV  YLK K    PLP  II  +++YK+DPW+LP      E
Sbjct: 27  RGSAPELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGE 86

Query: 65  QERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQML---MGMKKTLVFY 121
           QE YFFS  + KYPNG R NRA  SGYWKATG DK IL+S     ++   +G+KK LVFY
Sbjct: 87  QEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFY 146

Query: 122 RGKAPHESRTDWIMHEYRLVTAATNQPSSR-----------NYSKEMENWVICKIFMKKR 170
           RGK P   +T+WIMHEYRL   + +  +SR             S  +++WV+C+I+  K+
Sbjct: 147 RGKPPKGLKTNWIMHEYRLTDVSGSTTTSRPPPPVTGGSRAAASLRLDDWVLCRIY--KK 204

Query: 171 TRKDDANDGTNGVELPD 187
             K  A D     E  D
Sbjct: 205 INKAAAGDQQRSTECED 221

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-B2) and one extra pseudogene (NAM-B1) (PubMed:17124321).

Triticum durum (taxid: 4567)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  173 bits (439), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 90/190 (47%), Positives = 115/190 (60%), Gaps = 15/190 (7%)

Query: 13  RLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYF 69
            LPPGFRF PTD+ELV  YLK K   +PLP  II  +++YK+DPW+LP      E E YF
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYF 93

Query: 70  FSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSR-INQMLMGMKKTLVFYRGKAPHE 128
           FS  + KYPNG R NRA  SGYWKATG DK IL+S+    +  +G+KK LVFYRGK P  
Sbjct: 94  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRG 153

Query: 129 SRTDWIMHEYRLVTAA-----TNQP------SSRNYSKEMENWVICKIFMKKRTRKDDAN 177
            +T+WIMHEYRL  A+     T++P      S    S  +++WV+C+I+ K         
Sbjct: 154 LKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKAAAAVG 213

Query: 178 DGTNGVELPD 187
           D    +E  D
Sbjct: 214 DEQRSMECED 223

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  171 bits (433), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 88/174 (50%), Positives = 111/174 (63%), Gaps = 13/174 (7%)

Query: 10  GVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQE 66
           G   LPPGFRF PTD+ELV  YLK K  S PLP  II  I++YK+DPW+LP      E E
Sbjct: 12  GHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHE 71

Query: 67  RYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAP 126
            YFFS  + KYPNG R NRA  SGYWKATG DK I +    N   +G+KK LVFY GK P
Sbjct: 72  WYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFT---CNSHKVGVKKALVFYGGKPP 128

Query: 127 HESRTDWIMHEYRL----VTAATNQP---SSRNYSKEMENWVICKIFMKKRTRK 173
              +TDWIMHEYRL    ++ A   P   ++R  S  +++WV+C+I+ K  +++
Sbjct: 129 KGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQR 182

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  171 bits (433), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/159 (51%), Positives = 106/159 (66%), Gaps = 6/159 (3%)

Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTD+ELV  YL  KV   PLP PII  +++YK DPWDLP       +E YFF
Sbjct: 21  LPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRKEWYFF 80

Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           +  + KYPNG+R NRA   GYWKATG DK +  + + +   +G+KK LVFY GKAP   +
Sbjct: 81  TPRDRKYPNGSRPNRAAGRGYWKATGADKPV--APKGSARTVGIKKALVFYSGKAPRGVK 138

Query: 131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKK 169
           TDWIMHEYRL   A   P  +  S++++ WV+C+++ KK
Sbjct: 139 TDWIMHEYRLAD-ADRAPGGKKGSQKLDEWVLCRLYNKK 176

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  170 bits (431), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 89/190 (46%), Positives = 114/190 (60%), Gaps = 15/190 (7%)

Query: 13  RLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYF 69
            LPPGFRF PTD+ELV  YLK K   +PLP  II  +++YK+DPW+LP      E E YF
Sbjct: 34  ELPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYF 93

Query: 70  FSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSR-INQMLMGMKKTLVFYRGKAPHE 128
           FS  + KY NG R NRA  SGYWKATG DK IL+S+    +  +G+KK LVFYRGK P  
Sbjct: 94  FSPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRG 153

Query: 129 SRTDWIMHEYRLVTAA-----TNQP------SSRNYSKEMENWVICKIFMKKRTRKDDAN 177
            +T+WIMHEYRL  A+     T++P      S    S  +++WV+C+I+ K         
Sbjct: 154 LKTNWIMHEYRLTGASAGSTTTSRPPPVTGGSRAPASLRLDDWVLCRIYKKTSKAAAAVG 213

Query: 178 DGTNGVELPD 187
           D    +E  D
Sbjct: 214 DEQRSMECED 223

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
224119758	252	NAC domain protein, IPR003441 [Populus t	0.784	0.765	0.575	6e-70
255543138	254	NAC domain-containing protein, putative	0.943	0.913	0.582	7e-70
255540115	237	transcription factor, putative [Ricinus	0.776	0.805	0.630	5e-68
337733646	249	NAC domain transcription factor [Citrus	0.939	0.927	0.576	5e-68
297734471	209	unnamed protein product [Vitis vinifera]	0.678	0.799	0.708	5e-67
443682294	255	NAC protein 7 [Gossypium hirsutum]	0.943	0.909	0.562	5e-67
224134092	226	NAC domain protein, IPR003441 [Populus t	0.776	0.845	0.607	6e-67
359491575	216	PREDICTED: NAC domain-containing protein	0.678	0.773	0.708	7e-67
224053533	257	NAC domain protein, IPR003441 [Populus t	0.951	0.910	0.556	8e-67
224075517	255	NAC domain protein, IPR003441 [Populus t	0.943	0.909	0.568	2e-66

>gi|224119758|ref|XP_002318155.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222858828|gb|EEE96375.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 165/231 (71%), Gaps = 38/231 (16%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+NF FVRDG++ LPPGFRFQPT++ELVFQYLK K+ S PLPA +IP +N+ KYDPW+LP
Sbjct: 1   MENFNFVRDGMSGLPPGFRFQPTEEELVFQYLKRKILSWPLPASVIPEVNVCKYDPWELP 60

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G++EQERYFFSN EAKYPNGNR+NRA++SGYWKATGLD+QI+SSS  N  ++GMKKTLVF
Sbjct: 61  GDMEQERYFFSNKEAKYPNGNRVNRASSSGYWKATGLDRQIVSSSWKNNHVVGMKKTLVF 120

Query: 121 YRGKAPHESRTDWIMHEYRLV-----TAATNQP---------------SSRNYSKEMENW 160
           YRGKAPH SRTDW+MHEYRLV     T  +N P               +++N S +M+ W
Sbjct: 121 YRGKAPHGSRTDWVMHEYRLVNLGVETTDSNFPQTENSAQASYYYIFYATQNSSFQMDKW 180

Query: 161 VICKIFMKKR---------TRKDDANDGTNGVELPDQPQPRFYDFMMRDRI 202
           V+C+IF+K +         TR +D   GT         QPR +DFM RD I
Sbjct: 181 VVCRIFLKNKGAATTEITETRTNDNVGGT---------QPRLFDFMGRDEI 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543138|ref|XP_002512632.1| NAC domain-containing protein, putative [Ricinus communis] gi|223548593|gb|EEF50084.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  269 bits (688), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 145/249 (58%), Positives = 178/249 (71%), Gaps = 17/249 (6%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+   FV++GV RLPPGFRF PTD+ELV QYLK KVFS PLPA IIP +++ K DPWDLP
Sbjct: 1   MERLNFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G+LEQERYFFS  EAKYPNGNR NRAT+SGYWKATG+DK+I++S      L+GMKKTLVF
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATSSGYWKATGIDKEIVTSK--GNQLVGMKKTLVF 118

Query: 121 YRGKAPHESRTDWIMHEYRLV---TAATNQPSSRNYSKE----MENWVICKIFMKKRTRK 173
           YRGK PH +RTDWIMHEYRLV   TAA N P  +N  +     M+NWV+C+IF+KKR+ K
Sbjct: 119 YRGKPPHGTRTDWIMHEYRLVSPQTAACNSPQKKNPIQSPLGAMDNWVLCRIFLKKRSNK 178

Query: 174 DDAND----GTNGVELPDQPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGSE 229
           ++ ++      N V      +P FY+F+ +DR     A   CSS+S   GI+ +SSN  E
Sbjct: 179 NEEDNLHIGNENRVCKLRNTKPVFYEFLTKDRTDLNLA--PCSSSSGSSGITEVSSN--E 234

Query: 230 YDDDGESSS 238
            DD  ESSS
Sbjct: 235 SDDHEESSS 243

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540115|ref|XP_002511122.1| transcription factor, putative [Ricinus communis] gi|223550237|gb|EEF51724.1| transcription factor, putative [Ricinus communis]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 133/211 (63%), Positives = 158/211 (74%), Gaps = 20/211 (9%)

Query: 1   MDN-FQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDL 59
           MD+ F  +R+G+ +LPPGFRFQPTD+ELVFQYLK KV S PLPA IIP IN+ K+DPWDL
Sbjct: 1   MDHKFNLMREGMIKLPPGFRFQPTDEELVFQYLKRKVLSWPLPASIIPDINVCKFDPWDL 60

Query: 60  PGNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLV 119
           PGN EQERYFFSN E+KYPNGNRINRATASGYWKATGL+KQI SSS  N  ++GMKKTLV
Sbjct: 61  PGNTEQERYFFSNKESKYPNGNRINRATASGYWKATGLEKQIGSSSSGNH-VVGMKKTLV 119

Query: 120 FYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRKDDA--- 176
           FYRGK+PH +RTDWIMHEYRLV+A TN  +      ++E WV+C+IF K R+ + +    
Sbjct: 120 FYRGKSPHATRTDWIMHEYRLVSAGTNSLN------QLEKWVLCRIFFKNRSTERNGETI 173

Query: 177 -----NDGTNGVELPDQPQPRFYDFMMRDRI 202
                N   N V +    QPRF DFM  D+I
Sbjct: 174 QTCNDNKVNNAVVI----QPRFIDFMKTDKI 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|337733646|gb|AEI72272.1| NAC domain transcription factor [Citrus trifoliata]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/243 (57%), Positives = 175/243 (72%), Gaps = 12/243 (4%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+   F+++GV RLPPGFRF PTD+ELV QYLK K+F+ PLPA IIP +++ K DPWDLP
Sbjct: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G++ QERYFFS  EAKYPNGNR NRAT SGYWKATGLDKQI ++SR NQ ++GMKKTLVF
Sbjct: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQ-IVGMKKTLVF 118

Query: 121 YRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSK----EMENWVICKIFMKKRTRKDDA 176
           YRGK PH SRTDWIMHEYRLVTAA N P  +N+++      +NWV+C+IF+KKR  K + 
Sbjct: 119 YRGKPPHGSRTDWIMHEYRLVTAA-NAPQKKNFAQTPAVATDNWVLCRIFLKKRGAKSED 177

Query: 177 NDGTN--GVELPDQPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGSEYDDDG 234
            +     G    + P+P FYDFM ++         + SS+S   G++ +SSN  E DD  
Sbjct: 178 EETCTKIGGTRANGPKPVFYDFMRKEERADLNLVPT-SSSSGSSGVTEVSSN--ESDDHE 234

Query: 235 ESS 237
           ESS
Sbjct: 235 ESS 237

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734471|emb|CBI15718.3| unnamed protein product [Vitis vinifera]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 124/175 (70%), Positives = 143/175 (81%), Gaps = 8/175 (4%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+ F FVRDGV RLP GFRFQPTD+ELVFQYLKCKVFS PLPA IIP IN+ KYDPWDLP
Sbjct: 1   MEKFNFVRDGVIRLPLGFRFQPTDEELVFQYLKCKVFSRPLPASIIPEINVSKYDPWDLP 60

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G+LEQE+YFFSN EAKY  GNR NRAT+SGYWKA+G DKQI SS   N  L+GMKKTLVF
Sbjct: 61  GDLEQEKYFFSNKEAKYQIGNRSNRATSSGYWKASGTDKQITSSR--NSQLVGMKKTLVF 118

Query: 121 YRGKAPHESRTDWIMHEYRLVTAAT----NQPSSRNYSKEMENWVICKIFMKKRT 171
           YRGK P++SRTDW+MHEYRL+ A      N PSS   S +ME+WV+C++F+K+RT
Sbjct: 119 YRGKPPYDSRTDWVMHEYRLLIAGAPQTKNTPSSS--SIQMEDWVLCRVFLKRRT 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443682294|gb|AGC97437.1| NAC protein 7 [Gossypium hirsutum]

 Score =  259 bits (663), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 140/249 (56%), Positives = 176/249 (70%), Gaps = 17/249 (6%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+   FV++GV RLPPGFRF PTD+ELV QYL+ KV S PLPA IIP +++ K DPWDLP
Sbjct: 2   MEKLNFVKNGVLRLPPGFRFHPTDEELVVQYLRRKVLSWPLPASIIPEVDVCKADPWDLP 61

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G+LEQERYFFS  EAKYPNGNR NRAT SGYWKATG+DKQ++S S     ++GMKKTLVF
Sbjct: 62  GDLEQERYFFSTREAKYPNGNRSNRATLSGYWKATGIDKQVVSCS--GNQVVGMKKTLVF 119

Query: 121 YRGKAPHESRTDWIMHEYRLVTAAT-NQPSSRNYSK----EMENWVICKIFMKKRT---- 171
           YRGK P  +RTDWIMHEYRLVTA T N P  +N ++     +ENWV+C+IF+KKR+    
Sbjct: 120 YRGKPPQGTRTDWIMHEYRLVTADTCNAPHKKNQTQNHLVAVENWVLCRIFLKKRSGATN 179

Query: 172 RKDDANDGTN--GVELPDQPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGSE 229
           R+DD     N  GV    +  P FY+F+ ++R     A +  SS+S   GI+ +S++ + 
Sbjct: 180 REDDGLQCCNEKGVGKARRKSPVFYEFLSKERTDLNLAPA--SSSSCSSGITQVSNDNA- 236

Query: 230 YDDDGESSS 238
            DD  ESSS
Sbjct: 237 -DDHEESSS 244

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134092|ref|XP_002321734.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222868730|gb|EEF05861.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  259 bits (663), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 124/204 (60%), Positives = 151/204 (74%), Gaps = 13/204 (6%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+    VRDG+ RLPPGFRFQPTD+ELVFQYLK K+ S PLPA +I  +N+ KYDPW+LP
Sbjct: 1   MEKLNLVRDGMIRLPPGFRFQPTDEELVFQYLKRKILSWPLPASVIHEVNVCKYDPWELP 60

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G+ EQERYFFSN E KYPNGNR+NR++ASGYWKATGLDKQI+SSS  N  ++GMKKTLVF
Sbjct: 61  GDTEQERYFFSNKETKYPNGNRVNRSSASGYWKATGLDKQIISSSWKNNHVVGMKKTLVF 120

Query: 121 YRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKR--TRKDDAND 178
           YRGKA H SRTDW+MHEYRLV          N S +++ WV+C++F+K +  TR      
Sbjct: 121 YRGKATHGSRTDWVMHEYRLVN---------NSSYQLDKWVVCRVFLKNKGGTRNGIIET 171

Query: 179 GTNGVELPDQPQPRFYDFMMRDRI 202
            TN      + QPRF+DFM RD +
Sbjct: 172 CTNNN--ARRTQPRFFDFMARDEV 193

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491575|ref|XP_002284279.2| PREDICTED: NAC domain-containing protein 29-like [Vitis vinifera]

 Score =  259 bits (662), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 124/175 (70%), Positives = 143/175 (81%), Gaps = 8/175 (4%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+ F FVRDGV RLP GFRFQPTD+ELVFQYLKCKVFS PLPA IIP IN+ KYDPWDLP
Sbjct: 1   MEKFNFVRDGVIRLPLGFRFQPTDEELVFQYLKCKVFSRPLPASIIPEINVSKYDPWDLP 60

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G+LEQE+YFFSN EAKY  GNR NRAT+SGYWKA+G DKQI SS   N  L+GMKKTLVF
Sbjct: 61  GDLEQEKYFFSNKEAKYQIGNRSNRATSSGYWKASGTDKQITSSR--NSQLVGMKKTLVF 118

Query: 121 YRGKAPHESRTDWIMHEYRLVTAAT----NQPSSRNYSKEMENWVICKIFMKKRT 171
           YRGK P++SRTDW+MHEYRL+ A      N PSS   S +ME+WV+C++F+K+RT
Sbjct: 119 YRGKPPYDSRTDWVMHEYRLLIAGAPQTKNTPSSS--SIQMEDWVLCRVFLKRRT 171

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053533|ref|XP_002297860.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845118|gb|EEE82665.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  259 bits (662), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 139/250 (55%), Positives = 171/250 (68%), Gaps = 16/250 (6%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+   FV++GV RLPPGFRF PTD+ELV QYLK KVF+ PLPA IIP +++ K DPWDLP
Sbjct: 1   MEKLSFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G+LEQERYFFS  EAKYPNGNR NRAT SGYWKATG+DKQI++S      ++GMKKTLVF
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTSK--GHQVVGMKKTLVF 118

Query: 121 YRGKAPHESRTDWIMHEYRLV---TAATNQPSSRNYSK-----EMENWVICKIFMKKRTR 172
           YRGK PH +RTDWIMHEYRL    T A N   ++N ++      MENWV+C+IF+KKR  
Sbjct: 119 YRGKPPHGTRTDWIMHEYRLASTETTACNTLKNKNSTQGPVVVPMENWVLCRIFLKKRGT 178

Query: 173 KDDANDGTNGVE--LPD--QPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGS 228
           K++  +   G +  LP     +P FYDFM +++        S SS+ S      +S N  
Sbjct: 179 KNEEENIQVGNDNRLPKLRATEPVFYDFMTKEKTTDLNLAPSSSSSGSSGITEEVSCN-- 236

Query: 229 EYDDDGESSS 238
           E DD  ESSS
Sbjct: 237 ESDDHEESSS 246

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075517|ref|XP_002304662.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222842094|gb|EEE79641.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  258 bits (659), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/250 (56%), Positives = 172/250 (68%), Gaps = 18/250 (7%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M+   FV++G  RLPPGFRF PTD+ELV QYLK KVF+ PLPA IIP +++ K DPWDLP
Sbjct: 1   MEKLNFVKNGAVRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
           G+LEQERYFFS  EAKYPNGNR NRAT SGYWKATG+DKQI+ +S+ NQ + GMKKTLVF
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIV-TSKGNQAV-GMKKTLVF 118

Query: 121 YRGKAPHESRTDWIMHEYRLV---TAATNQPSSRN-----YSKEMENWVICKIFMKKRTR 172
           YRGK PH +RTDWIMHEYRL    TAA N   ++N      +  MENWV+C+IF+KKR+ 
Sbjct: 119 YRGKPPHGTRTDWIMHEYRLASTETAACNALLNKNSIQGSVAVPMENWVLCRIFLKKRST 178

Query: 173 KDDAN----DGTNGVELPDQPQPRFYDFMMRDRIGSCAATSSCSSTSSYRGISGISSNGS 228
           K++      D  N +      +P FYDFM + R          SS+S   GI+ +S N  
Sbjct: 179 KNEEENMQFDNDNRLSKLRTTKPVFYDFMTKHRTTDLNLAP--SSSSGSSGITEVSCN-- 234

Query: 229 EYDDDGESSS 238
           E DD  ESSS
Sbjct: 235 ESDDHEESSS 244

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	246
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.784	0.765	0.570	1.5e-60
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.739	0.679	0.536	1.5e-51
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.662	0.447	0.511	9.3e-43
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.613	0.420	0.528	1.1e-42
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.739	0.568	0.459	2.2e-41
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.630	0.578	0.527	3.6e-41
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.666	0.648	0.491	4.6e-41
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.654	0.498	0.505	7.5e-41
TAIR|locus:2198225	289	ATAF1 [Arabidopsis thaliana (t	0.727	0.619	0.460	1.4e-39
TAIR|locus:2011531	317	NAC019 "NAC domain containing	0.646	0.501	0.491	7.8e-39

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 126/221 (57%), Positives = 162/221 (73%)

Query:     1 MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
             MDN + V++GV RLPPGFRF PTD+ELV QYLK KV SSPLPA IIP  ++ + DPWDLP
Sbjct:     1 MDNVKLVKNGVLRLPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFDVCRADPWDLP 60

Query:    61 GNLEQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVF 120
             GNLE+ERYFFS  EAKYPNGNR NRAT SGYWKATG+DK++++S R NQ ++G+KKTLVF
Sbjct:    61 GNLEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTS-RGNQ-IVGLKKTLVF 118

Query:   121 YRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRT-RKDDANDG 179
             Y+GK PH SRTDWIMHEYRL   +++ PSS   +   +NWV+C+IF+KKR   K+D +DG
Sbjct:   119 YKGKPPHGSRTDWIMHEYRL---SSSPPSSMGPT---QNWVLCRIFLKKRAGNKNDDDDG 172

Query:   180 -------------TNGVEL------PDQPQPRFYDFMMRDR 201
                          ++ +E+       D+ +P F+DFM ++R
Sbjct:   173 DSRNLRHNNNNNSSDQIEIITTDQTDDKTKPIFFDFMRKER 213

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 111/207 (53%), Positives = 140/207 (67%)

Query:    10 GVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLEQERYF 69
             GV RLPPGFRF PTD+ELV QYL+ KV   PLPA +IP  ++ K DPWDLPG+ E E YF
Sbjct:    11 GVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKSDPWDLPGDCESEMYF 70

Query:    70 FSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHES 129
             FS  EAKYPNGNR NR+T SGYWKATGLDKQI       ++++GMKKTLVFY+GK P+ +
Sbjct:    71 FSTREAKYPNGNRSNRSTGSGYWKATGLDKQIGKK----KLVVGMKKTLVFYKGKPPNGT 126

Query:   130 RTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRT-----RKDDANDGT-NGV 183
             RT+W++HEYRLV +   Q S   Y + M NWV+C++F+KKR+     RK+D  +   N  
Sbjct:   127 RTNWVLHEYRLVDS--QQDSL--YGQNM-NWVLCRVFLKKRSNSNSKRKEDEKEEVENEK 181

Query:   184 ELPDQPQ----------PRFYDFMMRD 200
             E   + +          P FYDFM +D
Sbjct:   182 ETETEREREEENKKSTCPIFYDFMRKD 208

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 89/174 (51%), Positives = 114/174 (65%)

Query:    14 LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
             LPPGFRF PTD+ELV  YLK K  S+PLP  II  +++YK+DPW+LP      EQE YFF
Sbjct:    17 LPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYFF 76

Query:    71 SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
             S  + KYPNG R NRA  SGYWKATG DK +L+S   NQ + G+KK LVFY GK P   +
Sbjct:    77 SPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDG-NQKV-GVKKALVFYSGKPPKGVK 134

Query:   131 TDWIMHEYRLV-TAATNQP-----SSRNYSKEMENWVICKIFMKKRTRKDDAND 178
             +DWIMHEYRL+     N+P      ++  S  +++WV+C+I+ K    +   ND
Sbjct:   135 SDWIMHEYRLIENKPNNRPPGCDFGNKKNSLRLDDWVLCRIYKKNNASRHVDND 188

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 1.1e-42, Sum P(2) = 1.1e-42
 Identities = 84/159 (52%), Positives = 106/159 (66%)

Query:     8 RDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---E 64
             +D  + LPPGFRF PTD+EL+  YL+ KV SSP+P  II  ++IYK DPWDLP      E
Sbjct:     4 KDPRSSLPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGE 63

Query:    65 QERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQIL--SSSRINQMLMGMKKTLVFYR 122
             +E YFFS  + KYPNG R NRA ASGYWKATG DK I   +    ++ + G+KK LVFYR
Sbjct:    64 KEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENI-GIKKALVFYR 122

Query:   123 GKAPHESRTDWIMHEYRLVTAATNQP--SSRNYSKEMEN 159
             GK P   +T+WIMHEYRL  + + +   SSR+   E+ N
Sbjct:   123 GKPPKGVKTNWIMHEYRLADSLSPKRINSSRSGGSEVNN 161

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 90/196 (45%), Positives = 120/196 (61%)

Query:    14 LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
             LPPGFRF PTD+ELV  YLK K  S PLP  II  +++YK+DPW+LP      EQE YFF
Sbjct:    17 LPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYFF 76

Query:    71 SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
             S  + KYPNG R NRA  SGYWKATG DK ++S+       +G+KK LVFY GK P   +
Sbjct:    77 SPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGVK 136

Query:   131 TDWIMHEYRLVTAATNQPS------SRNYSKEMENWVICKIFMKKRTRKDDANDGTNGVE 184
             +DWIMHEYRL     N+P+      ++  S  +++WV+C+I+ K  +     +   + + 
Sbjct:   137 SDWIMHEYRLTD---NKPTHICDFGNKKNSLRLDDWVLCRIYKKNNSTASRHHHHLHHIH 193

Query:   185 LPDQPQPRFYDFMMRD 200
             L D    R +D M+ D
Sbjct:   194 L-DNDHHR-HDMMIDD 207

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 86/163 (52%), Positives = 106/163 (65%)

Query:    14 LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNLE---QERYFF 70
             LPPGFRF PTD+EL+  YL+ +  S P P  IIP ++IYK+DPW LP   E    E YFF
Sbjct:     9 LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFF 68

Query:    71 SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
             S  E KYPNG R NRA  SGYWKATG DK I S S  N   +G+KK LVFY+G+ P   +
Sbjct:    69 SPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSS-N---VGVKKALVFYKGRPPKGIK 124

Query:   131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRK 173
             TDWIMHEYRL  +     + RN S  ++ WV+C+I+ K+   K
Sbjct:   125 TDWIMHEYRLHDSR-KASTKRNGSMRLDEWVLCRIYKKRGASK 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 87/177 (49%), Positives = 113/177 (63%)

Query:    13 RLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYF 69
             + PPGFRF PTD+ELV  YL  K  S P+PAPII  +++Y+YDPWDLP      E+E YF
Sbjct:     9 QFPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLPDMALYGEKEWYF 68

Query:    70 FSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHES 129
             FS  + KYPNG+R NRA  +GYWKATG DK I     +     G+KK LVFY GK P+  
Sbjct:    69 FSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGRPKPV-----GIKKALVFYSGKPPNGE 123

Query:   130 RTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKK---RTRKDDANDGTNGV 183
             +T+WIMHEYRL  A  ++   +  S  +++WV+C+I+ KK     R+ D  DG   V
Sbjct:   124 KTNWIMHEYRL--ADVDRSVRKKNSLRLDDWVLCRIYNKKGVIEKRRSDIEDGLKPV 178

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 88/174 (50%), Positives = 111/174 (63%)

Query:    10 GVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQE 66
             G   LPPGFRF PTD+ELV  YLK K  S PLP  II  I++YK+DPW+LP      E E
Sbjct:    12 GHPHLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHE 71

Query:    67 RYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAP 126
              YFFS  + KYPNG R NRA  SGYWKATG DK I +    N   +G+KK LVFY GK P
Sbjct:    72 WYFFSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTC---NSHKVGVKKALVFYGGKPP 128

Query:   127 HESRTDWIMHEYRL----VTAATNQP---SSRNYSKEMENWVICKIFMKKRTRK 173
                +TDWIMHEYRL    ++ A   P   ++R  S  +++WV+C+I+ K  +++
Sbjct:   129 KGIKTDWIMHEYRLTDGNLSTAAKPPDLTTTRKNSLRLDDWVLCRIYKKNSSQR 182

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2198225 ATAF1 [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 88/191 (46%), Positives = 118/191 (61%)

Query:    13 RLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYF 69
             +LPPGFRF PTD+ELV  YL  K  S  +  PII  I++YKYDPW+LPG     E+E YF
Sbjct:     6 QLPPGFRFHPTDEELVMHYLCRKCASQSIAVPIIAEIDLYKYDPWELPGLALYGEKEWYF 65

Query:    70 FSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHES 129
             FS  + KYPNG+R NR+  SGYWKATG DK I     +     G+KK LVFY GKAP   
Sbjct:    66 FSPRDRKYPNGSRPNRSAGSGYWKATGADKPIGLPKPV-----GIKKALVFYAGKAPKGE 120

Query:   130 RTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRT--RKDDANDGTNGVELPD 187
             +T+WIMHEYRL     +    +N S  +++WV+C+I+ KK    R+        G E+ +
Sbjct:   121 KTNWIMHEYRLADVDRSVRKKKN-SLRLDDWVLCRIYNKKGATERRGPPPPVVYGDEIME 179

Query:   188 QPQPRFYDFMM 198
             + +P+  + +M
Sbjct:   180 E-KPKVTEMVM 189

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0009788 "negative regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2011531 NAC019 "NAC domain containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 85/173 (49%), Positives = 114/173 (65%)

Query:    14 LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
             LPPGFRF PTD+EL+ QYL  K         +I  I++YK+DPW LP      E+E YFF
Sbjct:    14 LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 73

Query:    71 SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
             S  + KYPNG+R NR   SGYWKATG DK I+S+    Q + G+KK LVFY GKAP  ++
Sbjct:    74 SPRDRKYPNGSRPNRVAGSGYWKATGTDK-IISTE--GQRV-GIKKALVFYIGKAPKGTK 129

Query:   131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRKDDANDGTNGV 183
             T+WIMHEYRL+     +PS RN S ++++WV+C+I+ K+ + +    D  NG+
Sbjct:   130 TNWIMHEYRLI-----EPSRRNGSTKLDDWVLCRIYKKQSSAQKQVYD--NGI 175

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	246
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	9e-70

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  210 bits (536), Expect = 9e-70
 Identities = 79/132 (59%), Positives = 96/132 (72%), Gaps = 8/132 (6%)

Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAP-IIPHINIYKYDPWDLPG----NLEQERY 68
           LPPGFRF PTD+ELV  YLK KV   PLP   +IP ++IYK++PWDLP       ++E Y
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 69  FFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHE 128
           FFS  + KYPNG+R NRAT SGYWKATG DK +LS       ++GMKKTLVFY+G+AP  
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPVLSK---GGEVVGMKKTLVFYKGRAPKG 117

Query: 129 SRTDWIMHEYRL 140
            +TDW+MHEYRL
Sbjct: 118 EKTDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	246
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.9e-44  Score=290.98  Aligned_cols=125  Identities=52%  Similarity=1.050  Sum_probs=94.6

Q ss_pred             CCCCeeeCCCHHHHHHHHHHHHHcCCCCCC-CceecccCCCCCCCCCCC---ccccceeeeecccccCCCCCCccccccC
Q 047398           14 LPPGFRFQPTDDELVFQYLKCKVFSSPLPA-PIIPHINIYKYDPWDLPG---NLEQERYFFSNNEAKYPNGNRINRATAS   89 (246)
Q Consensus        14 LPpGfRF~PTDeELV~~YL~~K~~g~plp~-~~I~~vDVy~~~PwdLpg---~~~~e~YFFs~~~~k~~~g~R~~R~tg~   89 (246)
                      |||||||+|||+|||.+||++|+.|.++|. .+|+++|||++|||+||+   ..+.+||||++++.++.+++|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999998 799999999999999993   3347999999999999999999999999


Q ss_pred             ceEeecccceeeeeCCCCceeeeeeEEEEEEeccCCCCCCCcCeEEEEEEeC
Q 047398           90 GYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLV  141 (246)
Q Consensus        90 G~Wk~~G~~k~I~~~~~~~~~~vG~KktL~Fy~g~~~~g~rT~WvMhEY~L~  141 (246)
                      |+||++|+.++|...  ++.+ ||+|++|+||.++.+.+.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~--~g~~-iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDP--GGKV-IGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE---TTCE-EEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccc--ccee-eeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999985  4566 999999999998888889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	246
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		8e-41
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		2e-39
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		3e-39

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  163 bits (412), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 81/159 (50%), Positives = 103/159 (64%), Gaps = 7/159 (4%)
Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTDDELV  YL  K     LP PII  +++YK+DPWDLP       +E YFF
Sbjct: 15  LPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFF 74
Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           +  + KYPNG+R NRA  +GYWKATG DK +    R     +G+KK LVFY GKAP   +
Sbjct: 75  TPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGRT----LGIKKALVFYAGKAPRGVK 130
Query: 131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKK 169
           TDWIMHEYRL  A      ++  S  +++WV+C+++ KK
Sbjct: 131 TDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKK 169

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  158 bits (400), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 107/161 (66%), Gaps = 12/161 (7%)
Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTD+EL+ QYL  K         +I  I++YK+DPW LP      E+E YFF
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76
Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           S  + KYPNG+R NR   SGYWKATG DK I +  +     +G+KK LVFY GKAP  ++
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ----RVGIKKALVFYIGKAPKGTK 132
Query: 131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRT 171
           T+WIMHEYRL+     +PS RN S ++++WV+C+I+ K+ +
Sbjct: 133 TNWIMHEYRLI-----EPSRRNGSTKLDDWVLCRIYKKQSS 168

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  158 bits (399), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/161 (49%), Positives = 107/161 (66%), Gaps = 12/161 (7%)
Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTD+EL+ QYL  K         +I  I++YK+DPW LP      E+E YFF
Sbjct: 20  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 79
Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           S  + KYPNG+R NR   SGYWKATG DK I +  +     +G+KK LVFY GKAP  ++
Sbjct: 80  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ----RVGIKKALVFYIGKAPKGTK 135
Query: 131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRT 171
           T+WIMHEYRL+     +PS RN S ++++WV+C+I+ K+ +
Sbjct: 136 TNWIMHEYRLI-----EPSRRNGSTKLDDWVLCRIYKKQSS 171
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	246
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	8e-88
1ut7_A	171	No apical meristem protein; transcription regulati	2e-85

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  256 bits (657), Expect = 8e-88
 Identities = 81/168 (48%), Positives = 105/168 (62%), Gaps = 7/168 (4%)

Query: 9   DGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQ 65
           +    LPPGFRF PTDDELV  YL  K     LP PII  +++YK+DPWDLP       +
Sbjct: 10  EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAR 69

Query: 66  ERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKA 125
           E YFF+  + KYPNG+R NRA  +GYWKATG DK +    R     +G+KK LVFY GKA
Sbjct: 70  EWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAPRGR----TLGIKKALVFYAGKA 125

Query: 126 PHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRK 173
           P   +TDWIMHEYRL  A      ++  S  +++WV+C+++ KK   +
Sbjct: 126 PRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNEWE 173

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  250 bits (641), Expect = 2e-85
 Identities = 81/176 (46%), Positives = 109/176 (61%), Gaps = 12/176 (6%)

Query: 1   MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLP 60
           M   +        LPPGFRF PTD+EL+ QYL  K         +I  I++YK+DPW LP
Sbjct: 4   MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP 63

Query: 61  GNL---EQERYFFSNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKT 117
                 E+E YFFS  + KYPNG+R NR   SGYWKATG DK I +  +     +G+KK 
Sbjct: 64  NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ----RVGIKKA 119

Query: 118 LVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKKRTRK 173
           LVFY GKAP  ++T+WIMHEYRL+      PS RN S ++++WV+C+I+ K+ + +
Sbjct: 120 LVFYIGKAPKGTKTNWIMHEYRLIE-----PSRRNGSTKLDDWVLCRIYKKQSSAQ 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	246
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0
1ut7_A	171	No apical meristem protein; transcription regulati	100.0

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=5.5e-58  Score=386.98  Aligned_cols=158  Identities=51%  Similarity=1.006  Sum_probs=132.1

Q ss_pred             CCCcCCCCCeeeCCCHHHHHHHHHHHHHcCCCCCCCceecccCCCCCCCCCCCcc---ccceeeeecccccCCCCCCccc
Q 047398            9 DGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFFSNNEAKYPNGNRINR   85 (246)
Q Consensus         9 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp~~~I~~vDVy~~~PwdLpg~~---~~e~YFFs~~~~k~~~g~R~~R   85 (246)
                      .+++.|||||||+|||||||.|||++|+.|.++|..+|+++|||++|||+||+..   +.+||||+++++||++|.|.+|
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence            4568999999999999999999999999999999999999999999999999864   4789999999999999999999


Q ss_pred             cccCceEeecccceeeeeCCCCceeeeeeEEEEEEeccCCCCCCCcCeEEEEEEeCCCCCCCCCCCCcccCCCcEEEEEE
Q 047398           86 ATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKI  165 (246)
Q Consensus        86 ~tg~G~Wk~~G~~k~I~~~~~~~~~~vG~KktL~Fy~g~~~~g~rT~WvMhEY~L~~~~~~~~~~~~~~~~~~~~VLCrI  165 (246)
                      +|++||||++|++++|...   +.+ ||+||+|+||.|++|++.+|+|+||||+|.................++||||||
T Consensus        90 ~t~~G~WkatG~dk~I~~~---g~~-vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrv  165 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAPR---GRT-LGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRL  165 (174)
T ss_dssp             EETTEEEEECSCCEEECCS---SSC-CEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEE
T ss_pred             ecCCceEccCCCCcEEeeC---CcE-EEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEE
Confidence            9999999999999999864   355 999999999999999999999999999999875432111111125689999999


Q ss_pred             EEcCC
Q 047398          166 FMKKR  170 (246)
Q Consensus       166 y~k~r  170 (246)
                      |+|+.
T Consensus       166 f~K~~  170 (174)
T 3ulx_A          166 YNKKN  170 (174)
T ss_dssp             EESCC
T ss_pred             EEcCC
Confidence            99875

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=9.1e-58  Score=384.99  Aligned_cols=163  Identities=48%  Similarity=0.894  Sum_probs=130.9

Q ss_pred             CCccccccCCCcCCCCCeeeCCCHHHHHHHHHHHHHcCCCCCCCceecccCCCCCCCCCCCcc---ccceeeeecccccC
Q 047398            1 MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFFSNNEAKY   77 (246)
Q Consensus         1 m~~~~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp~~~I~~vDVy~~~PwdLpg~~---~~e~YFFs~~~~k~   77 (246)
                      |+..+--...++.|||||||+|||||||.+||++|+.|.++|..+|+++|||.+|||+||+..   +.+||||+++.+||
T Consensus         4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~   83 (171)
T 1ut7_A            4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (171)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence            444433345678999999999999999999999999999999999999999999999999864   47899999999999


Q ss_pred             CCCCCccccccCceEeecccceeeeeCCCCceeeeeeEEEEEEeccCCCCCCCcCeEEEEEEeCCCCCCCCCCCCcccCC
Q 047398           78 PNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEM  157 (246)
Q Consensus        78 ~~g~R~~R~tg~G~Wk~~G~~k~I~~~~~~~~~~vG~KktL~Fy~g~~~~g~rT~WvMhEY~L~~~~~~~~~~~~~~~~~  157 (246)
                      ++|.|.+|+|++||||++|++++|...   +.+ ||+||+|+||.|++|++.+|+|+||||+|.......     .....
T Consensus        84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~~---~~~-vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~-----~~~~~  154 (171)
T 1ut7_A           84 PNGSRPNRVAGSGYWKATGTDKIISTE---GQR-VGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRN-----GSTKL  154 (171)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEET---TEE-EEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-------------
T ss_pred             CCCCcccccCCCCEEeccCCCceEEec---CcE-EEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCcccc-----CcccC
Confidence            999999999999999999999999976   255 999999999999999999999999999999875211     11256


Q ss_pred             CcEEEEEEEEcCCCC
Q 047398          158 ENWVICKIFMKKRTR  172 (246)
Q Consensus       158 ~~~VLCrIy~k~r~~  172 (246)
                      ++|||||||+|+.+.
T Consensus       155 ~~~VlCrv~~k~~~~  169 (171)
T 1ut7_A          155 DDWVLCRIYKKQSSA  169 (171)
T ss_dssp             CCEEEEEEEECC---
T ss_pred             CCEEEEEEEEcCCCC
Confidence            899999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	246
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	6e-62

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  189 bits (482), Expect = 6e-62
 Identities = 80/159 (50%), Positives = 106/159 (66%), Gaps = 12/159 (7%)

Query: 14  LPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFF 70
           LPPGFRF PTD+EL+ QYL  K         +I  I++YK+DPW LP      E+E YFF
Sbjct: 17  LPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFF 76

Query: 71  SNNEAKYPNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESR 130
           S  + KYPNG+R NR   SGYWKATG DK I +  +     +G+KK LVFY GKAP  ++
Sbjct: 77  SPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTEGQ----RVGIKKALVFYIGKAPKGTK 132

Query: 131 TDWIMHEYRLVTAATNQPSSRNYSKEMENWVICKIFMKK 169
           T+WIMHEYRL+     +PS RN S ++++WV+C+I+ K+
Sbjct: 133 TNWIMHEYRLI-----EPSRRNGSTKLDDWVLCRIYKKQ 166

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	246
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.2e-55  Score=366.80  Aligned_cols=160  Identities=49%  Similarity=0.914  Sum_probs=130.6

Q ss_pred             CCccccccCCCcCCCCCeeeCCCHHHHHHHHHHHHHcCCCCCCCceecccCCCCCCCCCCCcc---ccceeeeecccccC
Q 047398            1 MDNFQFVRDGVTRLPPGFRFQPTDDELVFQYLKCKVFSSPLPAPIIPHINIYKYDPWDLPGNL---EQERYFFSNNEAKY   77 (246)
Q Consensus         1 m~~~~~~~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~plp~~~I~~vDVy~~~PwdLpg~~---~~e~YFFs~~~~k~   77 (246)
                      |+..+.-.-.+++|||||||+|||||||.+||++|+.|.|||..+|+++|||.+|||+||+..   +++||||+++++++
T Consensus         4 ~~~~~~~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~   83 (166)
T d1ut7a_           4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (166)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             ccccccCccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeecccc
Confidence            676666666789999999999999999999999999999999999999999999999999754   47899999999999


Q ss_pred             CCCCCccccccCceEeecccceeeeeCCCCceeeeeeEEEEEEeccCCCCCCCcCeEEEEEEeCCCCCCCCCCCCcccCC
Q 047398           78 PNGNRINRATASGYWKATGLDKQILSSSRINQMLMGMKKTLVFYRGKAPHESRTDWIMHEYRLVTAATNQPSSRNYSKEM  157 (246)
Q Consensus        78 ~~g~R~~R~tg~G~Wk~~G~~k~I~~~~~~~~~~vG~KktL~Fy~g~~~~g~rT~WvMhEY~L~~~~~~~~~~~~~~~~~  157 (246)
                      ++|.|.+|++++|+||++|+++.|...   +.+ ||+||+|+||+++.+++.+|+|+||||+|.+......     ....
T Consensus        84 ~~g~r~~R~~g~G~Wk~~g~~~~i~~~---g~~-vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~-----~~~~  154 (166)
T d1ut7a_          84 PNGSRPNRVAGSGYWKATGTDKIISTE---GQR-VGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNG-----STKL  154 (166)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEET---TEE-EEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-------------
T ss_pred             CCCCccccccCCCEecccCCCceEecC---CcE-EEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccC-----cccc
Confidence            999999999999999999999988764   455 9999999999999999999999999999988654211     1256


Q ss_pred             CcEEEEEEEEcC
Q 047398          158 ENWVICKIFMKK  169 (246)
Q Consensus       158 ~~~VLCrIy~k~  169 (246)
                      ++|||||||+|+
T Consensus       155 ~~~VLCrI~~Kk  166 (166)
T d1ut7a_         155 DDWVLCRIYKKQ  166 (166)
T ss_dssp             CCEEEEEEEECC
T ss_pred             CCEEEEEEEecC
Confidence            799999999985