Citrus Sinensis ID: 047417

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------46

RDEARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLHEEKGYEAAKTGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK

cccccccEEEEEccccEEEEEEccHHHHHHHHccccEEEEEccccccccccccccccccccccccccccccccccccccEEEEccccEEccccccccccccccccccccEEEcccccccccccccEEEEEEccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHHHHHHcccEEEEccccccccccccccccccEEEEEccccccEEEEEEEEccccEEEEEEEEcccccccccEEcccccccccccccccccccccccccccccccEEEEEEcccHHHHHHcccEEEEEcccccEEcccccccEEEEcHHHHHHHHHHHHccccEEEEEEccEEEcccccccEEEcccccccccccccccc

ccccHHHEEEEEccccccEEEEccHHHHHHHHHcccEEEEEccccEEEcccccHHHccccccccccccccccHccccccEEEEEEccccccccccccccccccccccccEEEccccccccHHcHHHHEHHHHHcccHHHcccccccccccccccccccccccccccHHcccccccccccEEcccccccccccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHcccEEEEEccccccccccEcccccEEEEEEccccccccccEEEEccccEEEEEEEccccccccEEEEEccccccccccccHHHHcccccccHHHcccEEEEEEcccccHHHHHcccEEEEEEcccccccccccccEEEEcHHHHHHHHHHHHcccccEEEEEcccEEEccccccEEEEEcccccccccHHHcc

RDEARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFlnkptkklttgawnflglekdnvipsnstwerarfgedviiggidsgiwpesesfsdeemgpipskwrgacqnddhygvecnRKLIGIRHynkglissatkrnpafdilpklktgrdldghgtHTLSAAAGNFVQYVGAFCnhrygtakggsprarvASYKVCwyseddhnaahgndcteqdtIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAaagnggpepqtinnmapwmltvgastmdreFAGYvtlgnnkrlrgaslsidmprksyplisgedarianatdkdarsckpgtldrkkVQGRILVCLHEEKGYEAAKTGAVAMITGasgtfsasygflpvtklKIKDFEAVLDYIKSTKDAKAFMTDAqtefaiepspavasfssrgpnridpsiik

RDEARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGawnflglekdnvipsnstwerarfGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYgtakggspraRVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVtlgnnkrlrgaslsidmprksyplisgedarianatdkdarsckpgtldrkkvqgRILVCLHEEKGYEAAKTGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEfaiepspavasfssrgpnridpsiik

*****************GF***********LANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWP***************KWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRG****************************************KKVQGRILVCLHEEKGYEAAKTGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMT*******************************

***ARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKD**************GEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLHEEKGYEAAKTGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK

********SSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPE*********GPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTA********VASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLHEEKGYEAAKTGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK

****RELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSAT**********************THTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQGRILVCLHEEKGYEAAKTGAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSR*P*RID***I*

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		458	2.2.26 [Sep-21-2011]
Q39547		731	Cucumisin OS=Cucumis melo	N/A	no	0.917	0.574	0.382	1e-78
O65351		757	Subtilisin-like protease	no	no	0.921	0.557	0.380	1e-75
Q9LLL8		749	Xylem serine proteinase 1	no	no	0.908	0.555	0.402	1e-72
O64495		775	Subtilisin-like protease	no	no	0.932	0.550	0.355	8e-68
P29141		806	Minor extracellular prote	yes	no	0.530	0.301	0.257	3e-06
Q9Z2A8		1052	Membrane-bound transcript	yes	no	0.506	0.220	0.246	0.0008

>sp\|Q39547\|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1	Back alignment and function desciption

 Score =  294 bits (752), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 176/460 (38%), Positives = 254/460 (55%), Gaps = 40/460 (8%)

Query: 4   ARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLEKDN 63
           A E +  +Y+R  NGFA  L EE A+++A+   VVSVFLN+  +  TT +W+FLG     
Sbjct: 65  APESVLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPL-- 122

Query: 64  VIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECN 123
            +P      R++   ++++G +D+GIWPES SF DE   P P KW+G C+  +++   CN
Sbjct: 123 TVP-----RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNF--RCN 175

Query: 124 RKLIGIRHYNKGL-ISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFC 182
           RK+IG R Y+ G  IS      P           RD +GHGTHT S AAG  V     + 
Sbjct: 176 RKIIGARSYHIGRPISPGDVNGP-----------RDTNGHGTHTASTAAGGLVSQANLY- 223

Query: 183 NHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGND-CTEQDTIEAFDDAIHDGVDIITV 241
               GTA+GG P AR+A+YKVCW           ND C++ D + A+DDAI DGVDII++
Sbjct: 224 GLGLGTARGGVPLARIAAYKVCW-----------NDGCSDTDILAAYDDAIADGVDIISL 272

Query: 242 SLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDR 301
           S+G      +  D + IG+FHA   G+LT  +AGNGGP   T  +++PW+L+V ASTMDR
Sbjct: 273 SVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDR 332

Query: 302 EFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDARSCKPGTLDRKKVQ 361
           +F   V +GN +  +G S++     + YPL+SG D          +R C   +++   ++
Sbjct: 333 KFVTQVQIGNGQSFQGVSINT-FDNQYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLK 391

Query: 362 GRILVCLHEEKGYEAAKT---GAVAMITGASGTFSASYGFLPVTKLKIKDFEAVLDYIKS 418
           G+I+VC      +E  K+    A  ++T  +  ++ SY  LP + L   D  A L YI S
Sbjct: 392 GKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYP-LPSSVLDPNDLLATLRYIYS 450

Query: 419 TKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK 458
            +   A +  + T      +P V SFSSRGPNR    +IK
Sbjct: 451 IRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIK 489

Cucumis melo (taxid: 3656)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 5

>sp\|O65351\|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1	Back alignment and function description

>sp\|Q9LLL8\|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1	Back alignment and function description

>sp\|O64495\|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1	Back alignment and function description

>sp\|P29141\|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1	Back alignment and function description

>sp\|Q9Z2A8\|MBTP1_CRIGR Membrane-bound transcription factor site-1 protease OS=Cricetulus griseus GN=MBTPS1 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		458
224056865		772	predicted protein [Populus trichocarpa]	0.969	0.575	0.538	1e-131
224122316		775	predicted protein [Populus trichocarpa]	0.971	0.574	0.529	1e-130
225447456		769	PREDICTED: subtilisin-like protease [Vit	0.969	0.577	0.515	1e-124
224129258		769	predicted protein [Populus trichocarpa]	0.969	0.577	0.505	1e-123
227053577		771	subtilisin-like serine protease [Carica	0.967	0.574	0.493	1e-121
225462068		745	PREDICTED: subtilisin-like protease-like	0.967	0.594	0.504	1e-120
20198252		755	subtilisin-like serine protease AIR3 [Ar	0.969	0.588	0.488	1e-118
22325457		772	Subtilisin-like serine endopeptidase fam	0.969	0.575	0.488	1e-118
296090005		803	unnamed protein product [Vitis vinifera]	0.967	0.551	0.491	1e-118
3695019		758	subtilisin-like protease, partial [Arabi	0.969	0.585	0.486	1e-118

>gi\|224056865\|ref\|XP_002299062.1\| predicted protein [Populus trichocarpa] gi\|222846320\|gb\|EEE83867.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 253/470 (53%), Positives = 320/470 (68%), Gaps = 26/470 (5%)

Query: 1   RDEARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLE 60
           +++A+E I  SY  +INGFAA LEEE A  LA HP+VVSVFLNK  K  TT +WNFLGLE
Sbjct: 68  KEKAKEKIFYSYTNNINGFAAVLEEEEASSLAKHPDVVSVFLNKGKKLHTTRSWNFLGLE 127

Query: 61  KDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGV 120
            D ++P  S W++AR+GEDVIIG +D+G+WPES+SFSDE MGP+PSKWRG CQ+D+  GV
Sbjct: 128 ADGMVPPYSLWKKARYGEDVIIGNLDTGVWPESKSFSDEGMGPVPSKWRGICQHDNKDGV 187

Query: 121 ECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGA 180
            CNRKLIG R++NKG  + A   N +F      +T RD +GHGTHTLS AAGNFV   GA
Sbjct: 188 VCNRKLIGTRYFNKGYAAYAGHLNSSF------QTARDSEGHGTHTLSTAAGNFVP--GA 239

Query: 181 -FCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDII 239
               +  GTAKGGSP AR A+YKVCW   +       N+C + D + AFD AI DGVD++
Sbjct: 240 DVLGYGNGTAKGGSPHARAAAYKVCWPPING-----SNECFDADILAAFDVAISDGVDVL 294

Query: 240 TVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTM 299
           +VSLG D  A+F  D + IG+FHA   G+  VA+AGN GP P T++N+APW++TVGASTM
Sbjct: 295 SVSLGGDP-AEFSDDAIAIGSFHAVAKGITVVASAGNSGPSPGTVSNVAPWLITVGASTM 353

Query: 300 DREFAGYVTLGNNKRLRGASLSID-MP-RKSYPLISGEDARIANATDKDARSCKPGTLDR 357
           DR F  YV LGN K L+GASLS   +P  K YPLIS  DA+ A+ +++DA  CKPG LD 
Sbjct: 354 DRAFTIYVALGNRKHLKGASLSEKRLPAEKFYPLISAADAKAADQSEEDALLCKPGALDP 413

Query: 358 KKVQGRILVCLHEE-----KGYEAAKTGAVAMITG----ASGTFSASYGFLPVTKLKIKD 408
           KKV+G+ILVCL  E     KG++A   GAV MI      +     A    LP   +   D
Sbjct: 414 KKVKGKILVCLRGENGRVDKGHQALLAGAVGMILANDENSGNEIIADTHVLPAAHVNFTD 473

Query: 409 FEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK 458
            EAV  Y+  TK+  AF+T+ +TE A +P+P +ASFSSRGPN I+ SI+K
Sbjct: 474 GEAVFSYLNFTKEPMAFLTNVRTELATKPAPFMASFSSRGPNIIEESILK 523

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224122316\|ref\|XP_002330593.1\| predicted protein [Populus trichocarpa] gi\|222872151\|gb\|EEF09282.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225447456\|ref\|XP_002266728.1\| PREDICTED: subtilisin-like protease [Vitis vinifera] gi\|296085071\|emb\|CBI28486.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224129258\|ref\|XP_002320540.1\| predicted protein [Populus trichocarpa] gi\|222861313\|gb\|EEE98855.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|227053577\|gb\|ACP18876.1\| subtilisin-like serine protease [Carica papaya]	Back alignment and taxonomy information

>gi\|225462068\|ref\|XP_002269877.1\| PREDICTED: subtilisin-like protease-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|20198252\|gb\|AAM15483.1\| subtilisin-like serine protease AIR3 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|22325457\|ref\|NP_565309.2\| Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana] gi\|4218991\|gb\|AAD12260.1\| subtilisin-like protease [Arabidopsis thaliana] gi\|330250707\|gb\|AEC05801.1\| Subtilisin-like serine endopeptidase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|296090005\|emb\|CBI39824.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|3695019\|gb\|AAC62611.1\| subtilisin-like protease, partial [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		458
TAIR\|locus:2050215		772	AIR3 "AT2G04160" [Arabidopsis	0.969	0.575	0.488	2.9e-112
UNIPROTKB\|Q6H733		799	P0026H03.20-1 "Putative subtil	0.967	0.554	0.445	1.7e-100
UNIPROTKB\|Q8H4X8		762	OJ1136_A10.113 "Putative subti	0.956	0.574	0.414	5.3e-88
TAIR\|locus:2153296		741	AT5G59100 "AT5G59100" [Arabido	0.637	0.394	0.429	4.5e-84
TAIR\|locus:2102792		738	AT3G46840 "AT3G46840" [Arabido	0.683	0.424	0.431	5.7e-84
TAIR\|locus:2171938		791	AT5G45650 "AT5G45650" [Arabido	0.986	0.571	0.378	3.9e-83
TAIR\|locus:2153291		736	SBT4.12 "AT5G59090" [Arabidops	0.631	0.392	0.437	5.1e-83
TAIR\|locus:2168444		732	AT5G59130 "AT5G59130" [Arabido	0.626	0.392	0.432	2.8e-80
TAIR\|locus:2168524		693	AT5G59190 "AT5G59190" [Arabido	0.626	0.414	0.378	1.2e-79
TAIR\|locus:2168434		732	SBT4.13 "AT5G59120" [Arabidops	0.628	0.393	0.432	2e-79

TAIR\|locus:2050215 AIR3 "AT2G04160" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 229/469 (48%), Positives = 305/469 (65%)

Query:     1 RDEARELISSSYRRHINGFAADLEEEHAQQLANHPEVVSVFLNKPTKKLTTGAWNFLGLE 60
             R+ A + I  SY +HINGFAA L+ + A +++ HPEVVSVF NK  K  TT +W+FLGLE
Sbjct:    68 RERATDAIFYSYTKHINGFAAHLDHDLAYEISKHPEVVSVFPNKALKLHTTRSWDFLGLE 127

Query:    61 KDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGV 120
              ++ +PS+S W +ARFGED II  +D+G+WPES+SF DE +GPIPS+W+G CQN      
Sbjct:   128 HNSYVPSSSIWRKARFGEDTIIANLDTGVWPESKSFRDEGLGPIPSRWKGICQNQKDATF 187

Query:   121 ECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGA 180
              CNRKLIG R++NKG  ++    N +FD      + RDLDGHG+HTLS AAG+FV  V  
Sbjct:   188 HCNRKLIGARYFNKGYAAAVGHLNSSFD------SPRDLDGHGSHTLSTAAGDFVPGVSI 241

Query:   181 FCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIIT 240
             F     GTAKGGSPRARVA+YKVCW          GN+C + D + AFD AIHDG D+I+
Sbjct:   242 F-GQGNGTAKGGSPRARVAAYKVCW------PPVKGNECYDADVLAAFDAAIHDGADVIS 294

Query:   241 VSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMD 300
             VSLG +  + F +D V IG+FHA    ++ V +AGN GP   T++N+APW +TVGASTMD
Sbjct:   295 VSLGGEPTS-FFNDSVAIGSFHAAKKRIVVVCSAGNSGPADSTVSNVAPWQITVGASTMD 353

Query:   301 REFAGYVTLGNNKRLRGASLSID-MPR-KSYPLISGEDARIANATDKDARSCKPGTLDRK 358
             REFA  + LGN K  +G SLS   +P  K YP+++  +A+  NA+  DA+ CK G+LD  
Sbjct:   354 REFASNLVLGNGKHYKGQSLSSTALPHAKFYPIMASVNAKAKNASALDAQLCKLGSLDPI 413

Query:   359 KVQGRILVCLHE-----EKGYEAAKTGAVAMI---TGASGT-FSASYGFLPVTKLKIKDF 409
             K +G+ILVCL       EKG   A  G + M+   T  +G    A    LP T+L  KD 
Sbjct:   414 KTKGKILVCLRGQNGRVEKGRAVALGGGIGMVLENTYVTGNDLLADPHVLPATQLTSKDS 473

Query:   410 EAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK 458
              AV  YI  TK   A +T ++T+  ++P+P +ASFSS+GP+ + P I+K
Sbjct:   474 FAVSRYISQTKKPIAHITPSRTDLGLKPAPVMASFSSKGPSIVAPQILK 522

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;ISS;IBA

GO:0005576 "extracellular region" evidence=ISM

GO:0005618 "cell wall" evidence=IBA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0008152 "metabolic process" evidence=IBA

GO:0042802 "identical protein binding" evidence=IEA

GO:0043086 "negative regulation of catalytic activity" evidence=IEA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010102 "lateral root morphogenesis" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

UNIPROTKB\|Q6H733 P0026H03.20-1 "Putative subtilisin-like proteinase AIR3" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8H4X8 OJ1136_A10.113 "Putative subtilisin-like serine protease AIR3" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2153296 AT5G59100 "AT5G59100" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2102792 AT3G46840 "AT3G46840" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2171938 AT5G45650 "AT5G45650" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2168444 AT5G59130 "AT5G59130" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		458
cd04852		307	cd04852, Peptidases_S8_3, Peptidase S8 family doma	6e-93
cd02120		126	cd02120, PA_subtilisin_like, PA_subtilisin_like: P	1e-19
cd07474		295	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid	9e-19
cd00306		241	cd00306, Peptidases_S8_S53, Peptidase domain in th	2e-13
cd07487		264	cd07487, Peptidases_S8_1, Peptidase S8 family doma	1e-10
cd07482		294	cd07482, Peptidases_S8_Lantibiotic_specific_protea	8e-09
cd07473		259	cd07473, Peptidases_S8_Subtilisin_like, Peptidase	3e-08
pfam05922		76	pfam05922, Inhibitor_I9, Peptidase inhibitor I9	4e-08
cd07490		254	cd07490, Peptidases_S8_6, Peptidase S8 family doma	2e-07
pfam00082		277	pfam00082, Peptidase_S8, Subtilase family	5e-07
cd04848		267	cd04848, Peptidases_S8_Autotransporter_serine_prot	4e-06
cd07477		229	cd07477, Peptidases_S8_Subtilisin_subset, Peptidas	2e-05
cd07484		260	cd07484, Peptidases_S8_Thermitase_like, Peptidase	3e-05
cd07475		346	cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8	3e-05
TIGR03921		350	TIGR03921, T7SS_mycosin, type VII secretion-associ	1e-04
cd07479		255	cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa	1e-04
cd07493		261	cd07493, Peptidases_S8_9, Peptidase S8 family doma	3e-04
cd04842		293	cd04842, Peptidases_S8_Kp43_protease, Peptidase S8	5e-04
cd07489		312	cd07489, Peptidases_S8_5, Peptidase S8 family doma	6e-04
cd07497		311	cd07497, Peptidases_S8_14, Peptidase S8 family dom	7e-04
cd07481		264	cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep	7e-04
cd07480		297	cd07480, Peptidases_S8_12, Peptidase S8 family dom	0.001
cd04077		255	cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep	0.002
cd05562		275	cd05562, Peptidases_S53_like, Peptidase domain in	0.003

>gnl\|CDD\|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3	Back alignment and domain information

 Score =  283 bits (726), Expect = 6e-93
 Identities = 102/254 (40%), Positives = 133/254 (52%), Gaps = 20/254 (7%)

Query: 47  KKLTTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPS 106
           +  TT + +FLGL         S    A  GE +IIG +D+GIWPE  SF+D   GP P 
Sbjct: 2   QLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPH 58

Query: 107 KWRGACQ-NDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTH 165
            W G C   +D     CN KLIG R+++ G  +        F+   + ++ RD DGHGTH
Sbjct: 59  TWPGDCVTGEDFNPFSCNNKLIGARYFSDGYDAY-----GGFNSDGEYRSPRDYDGHGTH 113

Query: 166 TLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTI 225
           T S AAGN V    +     +GTA G +PRAR+A YKVCW             C   D +
Sbjct: 114 TASTAAGNVV-VNASVGGFAFGTASGVAPRARIAVYKVCW---------PDGGCFGSDIL 163

Query: 226 EAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTIN 285
            A D AI DGVD+I+ S+G     D   D + I   HA   G+   A+AGN GP   T+ 
Sbjct: 164 AAIDQAIADGVDVISYSIGGGS-PDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVP 222

Query: 286 NMAPWMLTVGASTM 299
           N+APW+ TV AST+
Sbjct: 223 NVAPWVTTVAASTL 236

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307

>gnl\|CDD\|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases	Back alignment and domain information

>gnl\|CDD\|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins	Back alignment and domain information

>gnl\|CDD\|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families	Back alignment and domain information

>gnl\|CDD\|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1	Back alignment and domain information

>gnl\|CDD\|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases	Back alignment and domain information

>gnl\|CDD\|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>gnl\|CDD\|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9	Back alignment and domain information

>gnl\|CDD\|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6	Back alignment and domain information

>gnl\|CDD\|215701 pfam00082, Peptidase_S8, Subtilase family	Back alignment and domain information

>gnl\|CDD\|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	Back alignment and domain information

>gnl\|CDD\|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins	Back alignment and domain information

>gnl\|CDD\|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins	Back alignment and domain information

>gnl\|CDD\|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases	Back alignment and domain information

>gnl\|CDD\|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	Back alignment and domain information

>gnl\|CDD\|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins	Back alignment and domain information

>gnl\|CDD\|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9	Back alignment and domain information

>gnl\|CDD\|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases	Back alignment and domain information

>gnl\|CDD\|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5	Back alignment and domain information

>gnl\|CDD\|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14	Back alignment and domain information

>gnl\|CDD\|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins	Back alignment and domain information

>gnl\|CDD\|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12	Back alignment and domain information

>gnl\|CDD\|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins	Back alignment and domain information

>gnl\|CDD\|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		458
cd04852		307	Peptidases_S8_3 Peptidase S8 family domain, unchar	100.0
PTZ00262		639	subtilisin-like protease; Provisional	100.0
cd07479		255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	100.0
cd07476		267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	100.0
cd07491		247	Peptidases_S8_7 Peptidase S8 family domain, unchar	99.97
cd07475		346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	99.97
cd07485		273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	99.97
cd07483		291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	99.97
cd07484		260	Peptidases_S8_Thermitase_like Peptidase S8 family	99.97
cd07497		311	Peptidases_S8_14 Peptidase S8 family domain, uncha	99.97
cd05561		239	Peptidases_S8_4 Peptidase S8 family domain, unchar	99.97
cd07489		312	Peptidases_S8_5 Peptidase S8 family domain, unchar	99.97
cd07481		264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	99.97
cd07496		285	Peptidases_S8_13 Peptidase S8 family domain, uncha	99.96
cd07493		261	Peptidases_S8_9 Peptidase S8 family domain, unchar	99.96
cd04077		255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	99.96
cd07487		264	Peptidases_S8_1 Peptidase S8 family domain, unchar	99.96
cd07490		254	Peptidases_S8_6 Peptidase S8 family domain, unchar	99.96
cd07498		242	Peptidases_S8_15 Peptidase S8 family domain, uncha	99.96
cd05562		275	Peptidases_S53_like Peptidase domain in the S53 fa	99.96
cd07477		229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	99.96
cd07494		298	Peptidases_S8_10 Peptidase S8 family domain, uncha	99.95
cd07482		294	Peptidases_S8_Lantibiotic_specific_protease Peptid	99.95
KOG1153		501	consensus Subtilisin-related protease/Vacuolar pro	99.95
cd04842		293	Peptidases_S8_Kp43_protease Peptidase S8 family do	99.95
cd07480		297	Peptidases_S8_12 Peptidase S8 family domain, uncha	99.95
cd07473		259	Peptidases_S8_Subtilisin_like Peptidase S8 family	99.95
cd04843		277	Peptidases_S8_11 Peptidase S8 family domain, uncha	99.95
cd07474		295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	99.95
cd04059		297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	99.94
cd07492		222	Peptidases_S8_8 Peptidase S8 family domain, unchar	99.94
cd04857		412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	99.94
cd07478		455	Peptidases_S8_CspA-like Peptidase S8 family domain	99.94
cd04848		267	Peptidases_S8_Autotransporter_serine_protease_like	99.94
cd04847		291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	99.93
PF00082		282	Peptidase_S8: Subtilase family This is family S8 i	99.91
KOG4266		1033	consensus Subtilisin kexin isozyme-1/site 1 protea	99.91
cd00306		241	Peptidases_S8_S53 Peptidase domain in the S8 and S	99.86
cd07488		247	Peptidases_S8_2 Peptidase S8 family domain, unchar	99.76
COG1404		508	AprE Subtilisin-like serine proteases [Posttransla	99.72
KOG1114		1304	consensus Tripeptidyl peptidase II [Posttranslatio	99.64
cd02133		143	PA_C5a_like PA_C5a_like: Protease-associated domai	99.56
cd02120		126	PA_subtilisin_like PA_subtilisin_like: Protease-as	99.45
KOG3526		629	consensus Subtilisin-like proprotein convertase [P	99.43
cd04816		122	PA_SaNapH_like PA_SaNapH_like: Protease-associated	99.21
cd04056		361	Peptidases_S53 Peptidase domain in the S53 family.	99.19
cd02122		138	PA_GRAIL_like PA _GRAIL_like: Protease-associated	99.12
cd02129		120	PA_hSPPL_like PA_hSPPL_like: Protease-associated d	99.12
cd02130		122	PA_ScAPY_like PA_ScAPY_like: Protease-associated d	99.11
PF02225		101	PA: PA domain; InterPro: IPR003137 The PA (Proteas	99.1
cd02127		118	PA_hPAP21_like PA_hPAP21_like: Protease-associated	99.08
cd02124		129	PA_PoS1_like PA_PoS1_like: Protease-associated (PA	99.05
cd04818		118	PA_subtilisin_1 PA_subtilisin_1: Protease-associat	99.05
cd02132		139	PA_GO-like PA_GO-like: Protease-associated domain	99.04
cd02125		127	PA_VSR PA_VSR: Protease-associated (PA) domain-con	99.01
cd00538		126	PA PA: Protease-associated (PA) domain. The PA dom	99.0
cd02126		126	PA_EDEM3_like PA_EDEM3_like: protease associated d	99.0
cd04817		139	PA_VapT_like PA_VapT_like: Protease-associated dom	98.93
cd04819		127	PA_2 PA_2: Protease-associated (PA) domain subgrou	98.89
cd04813		117	PA_1 PA_1: Protease-associated (PA) domain subgrou	98.88
cd02123		153	PA_C_RZF_like PA_C-RZF_ like: Protease-associated	98.8
PF05922		82	Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP	98.26
cd04815		134	PA_M28_2 PA_M28_2: Protease-associated (PA) domain	98.24
cd02128		183	PA_TfR PA_TfR: Protease-associated domain containi	98.0
cd04822		151	PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do	97.66
cd02121		220	PA_GCPII_like PA_GCPII_like: Protease-associated d	97.54
cd04820		137	PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do	97.42
KOG2442		541	consensus Uncharacterized conserved protein, conta	97.4
cd04814		142	PA_M28_1 PA_M28_1: Protease-associated (PA) domain	97.34
KOG3525		431	consensus Subtilisin-like proprotein convertase [P	96.84
cd02131		153	PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso	96.79
KOG3920		193	consensus Uncharacterized conserved protein, conta	96.11
COG4934		1174	Predicted protease [Posttranslational modification	96.1
cd04821		157	PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do	95.86
KOG4628		348	consensus Predicted E3 ubiquitin ligase [Posttrans	95.8
PF08260		8	Kinin: Insect kinin peptide; InterPro: IPR013202 T	88.97
KOG1114		1304	consensus Tripeptidyl peptidase II [Posttranslatio	88.02

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3	Back alignment and domain information

Probab=100.00  E-value=1.9e-38  Score=315.51  Aligned_cols=234  Identities=44%  Similarity=0.724  Sum_probs=195.5

Q ss_pred             cccCCCCCCcccCCCcCCCCCChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCC-ccCCc
Q 047417           46 TKKLTTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYG-VECNR  124 (458)
Q Consensus        46 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~-~~~n~  124 (458)
                      ++++++++++++++...-   ...+|.++++|+||+|||||||||++||+|++....+++..|.+.|..+..+. .++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (307)
T cd04852           1 YQLHTTRSPDFLGLPGAW---GGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNN   77 (307)
T ss_pred             CCccccCCHHHcCCCCCC---CcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCC
Confidence            467888999999987432   11257779999999999999999999999999888888999999999888776 67999


Q ss_pred             eeeeeEecCCCccccccCCCCCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEee
Q 047417          125 KLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVC  204 (458)
Q Consensus       125 k~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~  204 (458)
                      |+++.++|..++.  ...+   .+...+..++.|..||||||||||||+...+....| ...+.+.||||+|+|+.+|++
T Consensus        78 ki~g~~~~~~~~~--~~~~---~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~-~~~~~~~GvAP~a~l~~~kv~  151 (307)
T cd04852          78 KLIGARYFSDGYD--AYGG---FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGG-FAFGTASGVAPRARIAVYKVC  151 (307)
T ss_pred             eEEEEEEcccchh--hccC---cccccCCCCCccCCCCchhhhhhhcCCCcccccccc-cccccEEEECCCCeEEEEEEe
Confidence            9999999987654  1111   122334567789999999999999998765544444 555678999999999999999


Q ss_pred             cCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCc
Q 047417          205 WYSEDDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTI  284 (458)
Q Consensus       205 ~~~~~~~~~~~g~~~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~  284 (458)
                      +..         +.+..+++++||++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|+...+.
T Consensus       152 ~~~---------~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~  221 (307)
T cd04852         152 WPD---------GGCFGSDILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTV  221 (307)
T ss_pred             cCC---------CCccHHHHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcc
Confidence            874         26889999999999999999999999999732 44667888888999999999999999999888888


Q ss_pred             ccCCCccEEecccc
Q 047417          285 NNMAPWMLTVGAST  298 (458)
Q Consensus       285 ~~~a~~vitVgA~~  298 (458)
                      ++.+|++|+|||++
T Consensus       222 ~~~~~~vi~Vga~~  235 (307)
T cd04852         222 PNVAPWVTTVAAST  235 (307)
T ss_pred             cCCCCCeEEEEecc
Confidence            88999999999987

>PTZ00262 subtilisin-like protease; Provisional	Back alignment and domain information

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins	Back alignment and domain information

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases	Back alignment and domain information

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7	Back alignment and domain information

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases	Back alignment and domain information

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin	Back alignment and domain information

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins	Back alignment and domain information

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins	Back alignment and domain information

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14	Back alignment and domain information

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4	Back alignment and domain information

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5	Back alignment and domain information

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins	Back alignment and domain information

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13	Back alignment and domain information

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9	Back alignment and domain information

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins	Back alignment and domain information

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1	Back alignment and domain information

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6	Back alignment and domain information

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15	Back alignment and domain information

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family	Back alignment and domain information

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins	Back alignment and domain information

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10	Back alignment and domain information

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases	Back alignment and domain information

>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases	Back alignment and domain information

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12	Back alignment and domain information

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11	Back alignment and domain information

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins	Back alignment and domain information

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases	Back alignment and domain information

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8	Back alignment and domain information

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II	Back alignment and domain information

>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins	Back alignment and domain information

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases	Back alignment and domain information

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins	Back alignment and domain information

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification	Back alignment and domain information

>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families	Back alignment and domain information

>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2	Back alignment and domain information

>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase	Back alignment and domain information

>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases	Back alignment and domain information

>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH)	Back alignment and domain information

>cd04056 Peptidases_S53 Peptidase domain in the S53 family	Back alignment and domain information

>cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like	Back alignment and domain information

>cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like	Back alignment and domain information

>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY)	Back alignment and domain information

>PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A []	Back alignment and domain information

>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa)	Back alignment and domain information

>cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like	Back alignment and domain information

>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1	Back alignment and domain information

>cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10	Back alignment and domain information

>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR)	Back alignment and domain information

>cd00538 PA PA: Protease-associated (PA) domain	Back alignment and domain information

>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins	Back alignment and domain information

>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530	Back alignment and domain information

>cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2	Back alignment and domain information

>cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1	Back alignment and domain information

>cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like	Back alignment and domain information

>PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively	Back alignment and domain information

>cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2	Back alignment and domain information

>cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR)	Back alignment and domain information

>cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3	Back alignment and domain information

>cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like	Back alignment and domain information

>cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1	Back alignment and domain information

>KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

>cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1	Back alignment and domain information

>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2)	Back alignment and domain information

>KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only]	Back alignment and domain information

>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2	Back alignment and domain information

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach	Back alignment and domain information

>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		458
3vta_A		621	Crystal Structure Of Cucumisin, A Subtilisin-Like E		7e-69
3i6s_A		649	Crystal Structure Of The Plant Subtilisin-Like Prot		2e-58
3afg_A		539	Crystal Structure Of Pron-Tk-Sp From Thermococcus K		2e-05

>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621

Back alignment and structure

Iteration: 1

Score = 258 bits (658), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 156/414 (37%), Positives = 225/414 (54%), Gaps = 40/414 (9%) Query: 50 TTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWR 109 TT +W+FLG +P R++ ++++G +D+GIWPES SF DE P P KW+ Sbjct: 1 TTRSWDFLGFPL--TVP-----RRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53 Query: 110 GACQNDDHYGVECNRKLIGIRHYNKGL-ISSATKRNPAFDILPKLKTGRDLDGHGTHTLS 168 G C+ +++ CNRK+IG R Y+ G IS P RD +GHGTHT S Sbjct: 54 GTCETSNNF--RCNRKIIGARSYHIGRPISPGDVNGP-----------RDTNGHGTHTAS 100 Query: 169 AAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGND-CTEQDTIEA 227 AAG V + GTA+GG P AR+A+YKVCW ND C++ D + A Sbjct: 101 TAAGGLVSQANLY-GLGLGTARGGVPLARIAAYKVCW-----------NDGCSDTDILAA 148 Query: 228 FDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNM 287 +DDAI DGVDII++S+G + D + IG+FHA G+LT +AGNGGP T ++ Sbjct: 149 YDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASL 208 Query: 288 APWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDA 347 +PW+L+V ASTMDR+F V +GN + +G S++ + YPL+SG D + Sbjct: 209 SPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINT-FDNQYYPLVSGRDIPNTGFDKSTS 267 Query: 348 RSCKPGTLDRKKVQGRILVCLHEEKGYEAAKT---GAVAMITGASGTFSASYGFLPVTKL 404 R C +++ ++G+I+VC +E K+ A ++T + ++ SY LP + L Sbjct: 268 RFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYP-LPSSVL 326 Query: 405 KIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK 458 D A L YI S + A + + T +P V SFSSRGPNR +IK Sbjct: 327 DPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSSRGPNRATKDVIK 379

PyMOL of 3vta

>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649

Back alignment and structure

>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		458
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	1e-120
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	1e-114
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	1e-87
3afg_A		539	Subtilisin-like serine protease; propeptide, therm	3e-15
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	6e-15
4aks_A		360	PATG, thiazoline oxidase/subtilisin-like protease;	9e-14
1wmd_A		434	Protease; alpha-beta hydrolase fold, jelly-roll be	1e-12
1to2_E		281	Subtilisin BPN'; serine protease, hydrolase; HET:	1e-12
1r0r_E		274	Subtilisin carlsberg; high resolution, serine prot	3e-12
2z2z_A		395	TK-subtilisin precursor; thermococcus kodakaraensi	6e-12
1gci_A		269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	2e-11
1dbi_A		280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	3e-11
3t41_A		471	Epidermin leader peptide processing serine protea;	1e-10
1thm_A		279	Thermitase; hydrolase(serine protease); 1.37A {The	2e-10
3lpc_A		340	APRB2; protease, subtilase, virulence factor, hydr	3e-10
2x8j_A		327	Intracellular subtilisin protease; hydrolase, seri	1e-09
1r6v_A		671	Subtilisin-like serine protease; sandwich domain,	1e-09
2p4e_P		692	Proprotein convertase subtilisin/kexin type 9; pro	2e-09
2z30_A		320	TK-subtilisin; thermococcus kodakaraensis, hydrola	4e-09
2ixt_A		310	36KDA protease; serine protease, sphericase, subti	2e-08
2iy9_A		347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	5e-08
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	1e-07
2qtw_B		546	Proprotein convertase subtilisin/kexin type 9; cor	1e-06
2b6n_A		278	Proteinase K; S binding, substrate specificity, pr	2e-06
1sh7_A		284	Extracellular subtilisin-like serine proteinase; c	3e-06
2id4_A		503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	5e-06
4dzt_A		276	Aqualysin-1, aqualysin-I; serine protease, calcium	6e-06
3f7m_A		279	Alkaline serine protease VER112; verticillium psal	2e-05
2pwa_A		279	Proteinase K; structure, alanine boronic acid, hyd	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621	Back alignment and structure

 Score =  364 bits (935), Expect = e-120
 Identities = 149/411 (36%), Positives = 214/411 (52%), Gaps = 34/411 (8%)

Query: 50  TTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWR 109
           TT +W+FLG          +   R++   ++++G +D+GIWPES SF DE   P P KW+
Sbjct: 1   TTRSWDFLGFPL-------TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWK 53

Query: 110 GACQNDDHYGVECNRKLIGIRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSA 169
           G C+        CNRK+IG R Y+ G   S    N            RD +GHGTHT S 
Sbjct: 54  GTCET--SNNFRCNRKIIGARSYHIGRPISPGDVN----------GPRDTNGHGTHTAST 101

Query: 170 AAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDTIEAFD 229
           AAG  V           GTA+GG P AR+A+YKVCW           + C++ D + A+D
Sbjct: 102 AAGGLVSQA-NLYGLGLGTARGGVPLARIAAYKVCW----------NDGCSDTDILAAYD 150

Query: 230 DAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAP 289
           DAI DGVDII++S+G      +  D + IG+FHA   G+LT  +AGNGGP   T  +++P
Sbjct: 151 DAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSP 210

Query: 290 WMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGEDARIANATDKDARS 349
           W+L+V ASTMDR+F   V +GN +  +G S++     + YPL+SG D          +R 
Sbjct: 211 WLLSVAASTMDRKFVTQVQIGNGQSFQGVSINT-FDNQYYPLVSGRDIPNTGFDKSTSRF 269

Query: 350 CKPGTLDRKKVQGRILVCLHE--EKGYEAAKTGAVAMITGASGTFSASYGFLPVTKLKIK 407
           C   +++   ++G+I+VC        +  +  GA  ++  ++    A    LP + L   
Sbjct: 270 CTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPN 329

Query: 408 DFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSIIK 458
           D  A L YI S +   A +  + T      +P V SFSSRGPNR    +IK
Sbjct: 330 DLLATLRYIYSIRSPGATIFKS-TTILNASAPVVVSFSSRGPNRATKDVIK 379

PyMOL of 3vta

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926	Back alignment and structure

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539	Back alignment and structure

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354	Back alignment and structure

>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360	Back alignment and structure

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434	Back alignment and structure

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281	Back alignment and structure

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274	Back alignment and structure

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395	Back alignment and structure

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269	Back alignment and structure

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280	Back alignment and structure

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471	Back alignment and structure

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279	Back alignment and structure

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340	Back alignment and structure

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327	Back alignment and structure

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671	Back alignment and structure

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692	Back alignment and structure

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320	Back alignment and structure

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310	Back alignment and structure

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441	Back alignment and structure

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546	Back alignment and structure

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278	Back alignment and structure

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284	Back alignment and structure

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503	Back alignment and structure

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276	Back alignment and structure

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279	Back alignment and structure

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		458
3i6s_A		649	Subtilisin-like protease; PA-domain, FN3-domain, h	100.0
3vta_A		621	Cucumisin; subtilisin-like fold, serine protease,	100.0
1xf1_A		926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	100.0
1y9z_A		441	Alkaline serine protease; subtilisin-like alpha/be	100.0
2z2z_A		395	TK-subtilisin precursor; thermococcus kodakaraensi	100.0
3afg_A		539	Subtilisin-like serine protease; propeptide, therm	100.0
3t41_A		471	Epidermin leader peptide processing serine protea;	100.0
2p4e_P		692	Proprotein convertase subtilisin/kexin type 9; pro	100.0
1r6v_A		671	Subtilisin-like serine protease; sandwich domain,	100.0
1dbi_A		280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	100.0
1thm_A		279	Thermitase; hydrolase(serine protease); 1.37A {The	100.0
1r0r_E		274	Subtilisin carlsberg; high resolution, serine prot	100.0
2x8j_A		327	Intracellular subtilisin protease; hydrolase, seri	100.0
1gci_A		269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	100.0
1to2_E		281	Subtilisin BPN'; serine protease, hydrolase; HET:	100.0
2z30_A		320	TK-subtilisin; thermococcus kodakaraensis, hydrola	100.0
3zxy_A		282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	100.0
4h6x_A		357	Thiazoline oxidase/subtilisin-like protease; hydro	100.0
1sh7_A		284	Extracellular subtilisin-like serine proteinase; c	100.0
2b6n_A		278	Proteinase K; S binding, substrate specificity, pr	100.0
2ixt_A		310	36KDA protease; serine protease, sphericase, subti	100.0
4dzt_A		276	Aqualysin-1, aqualysin-I; serine protease, calcium	99.97
4h6w_A		306	N-terminal cyanobactin protease; hydrolase; 2.45A	99.97
3f7m_A		279	Alkaline serine protease VER112; verticillium psal	99.97
2pwa_A		279	Proteinase K; structure, alanine boronic acid, hyd	99.97
2iy9_A		347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	99.97
3lpc_A		340	APRB2; protease, subtilase, virulence factor, hydr	99.97
2qtw_B		546	Proprotein convertase subtilisin/kexin type 9; cor	99.97
1wmd_A		434	Protease; alpha-beta hydrolase fold, jelly-roll be	99.96
1p8j_A		471	Furin precursor; prohormone convertase, SPC1, PACE	99.96
2oxa_A		600	Extracellular serine protease; kexin, hydrolase; 1	99.96
2id4_A		503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	99.96
3hjr_A		600	Extracellular serine protease; kexin, hydrolase; 1	99.95
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	99.9
1t1e_A		552	Kumamolisin; proenzyme, prosubtilase, activation m	99.52
1ga6_A		372	Serine-carboxyl proteinase; serine-carboxyl protei	99.19
3icu_A		194	E3 ubiquitin-protein ligase RNF128; E3 ligase, ene	99.0
3cnq_P		80	Subtilisin BPN'; uncleaved, proenzyme, substrate c	98.29
2w2n_P		114	Proprotein convertase subtilisin/kexin type 9; hyd	98.05
2qtw_A		124	Proprotein convertase subtilisin/kexin type 9 Pro;	97.76
2ek8_A		421	Aminopeptidase; metalloproteinase, hydrolase; 1.80	97.74
1v5i_B		76	POIA1, IA-1=serine proteinase inhibitor; protease-	97.68
3iib_A		444	Peptidase M28; YP_926796.1, structural genomics, J	97.64
3edy_A		544	Tripeptidyl-peptidase 1; protease, TPP1, sedolisin	97.56
3kas_A		640	Transferrin receptor protein 1; transferrin recept	97.15
3fed_A		707	Glutamate carboxypeptidase III; metallopeptidase,	97.14
2z30_B		65	TK-subtilisin; thermococcus kodakaraensis, hydrola	96.81
3lxu_X		1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	92.69

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*	Back alignment and structure

Probab=100.00  E-value=1.1e-67  Score=568.82  Aligned_cols=376  Identities=37%  Similarity=0.616  Sum_probs=333.0

Q ss_pred             CCCCCcccCCCcCCCCCChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCC-ccCCceeee
Q 047417           50 TTGAWNFLGLEKDNVIPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYG-VECNRKLIG  128 (458)
Q Consensus        50 ~~~~~~~~g~~~~~~~~~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~-~~~n~k~~~  128 (458)
                      ++++|+|+|++.     ...+|..+.+|+||+|||||||||++||+|++.+++|+|.+|+|.|+.+.+|+ ..||+|+++
T Consensus         1 Tt~s~~flgl~~-----~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig   75 (649)
T 3i6s_A            1 TTHTSDFLKLNP-----SSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIG   75 (649)
T ss_dssp             CCSHHHHTTCCS-----SSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEE
T ss_pred             CCCChHHcCCCC-----chhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceee
Confidence            478999999974     25799999999999999999999999999999999999999999999999999 899999999


Q ss_pred             eEecCCCccccccCCCCCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCC
Q 047417          129 IRHYNKGLISSATKRNPAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSE  208 (458)
Q Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~  208 (458)
                      .++|.+++.  ...    .+...+..+++|..||||||||||||+.+++.+++| ...+.+.||||+|+|+++|+|+.. 
T Consensus        76 ~~~f~~~~~--~~~----~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G-~~~g~~~GvAP~A~l~~~kv~~~~-  147 (649)
T 3i6s_A           76 ANYFNKGIL--AND----PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFG-YAPGTARGVAPRARLAVYKFSFNE-  147 (649)
T ss_dssp             EEECCHHHH--HHC----TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETT-EEEEEECCSSTTCEEEEEECEETT-
T ss_pred             eEeccCccc--ccc----cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccc-cccCceeEECCCCEEEEEeccCCC-
Confidence            999986653  110    122334567889999999999999999887777777 667788999999999999999976 


Q ss_pred             CCcCCCCCCCCCHHHHHHHHHHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCC
Q 047417          209 DDHNAAHGNDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMA  288 (458)
Q Consensus       209 ~~~~~~~g~~~~~~~i~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a  288 (458)
                               ++..+++++||+||+++|+||||||||.. ...+..+++..++++|.++||+||+||||+|+...++++.+
T Consensus       148 ---------g~~~~~i~~Ai~~A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~a  217 (649)
T 3i6s_A          148 ---------GTFTSDLIAAMDQAVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGS  217 (649)
T ss_dssp             ---------EECHHHHHHHHHHHHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCC
T ss_pred             ---------CCCHHHHHHHHHHHHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCC
Confidence                     58999999999999999999999999987 45677899999999999999999999999999999999999


Q ss_pred             CccEEecccccCcceeeeEEeCCceEEeecccc-cCCCCCCcceEecccccccccCcccCCCCCCCCCCCCCC--CCcEE
Q 047417          289 PWMLTVGASTMDREFAGYVTLGNNKRLRGASLS-IDMPRKSYPLISGEDARIANATDKDARSCKPGTLDRKKV--QGRIL  365 (458)
Q Consensus       289 ~~vitVgA~~~~~~~~~~~~~g~~~~~~g~~~~-~~~~~~~~~lv~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkiv  365 (458)
                      ||+|+|||++.++.|..++.+|+++.+.|++++ .......+||++..          ....|.+..++..++  +||||
T Consensus       218 p~vitVgAst~dr~f~~~~~lgng~~~~g~sl~~~~~~~~~~plv~~~----------~~~~C~~~~l~~~~vdl~GkIv  287 (649)
T 3i6s_A          218 PWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNK----------TLSDCSSEELLSQVENPENTIV  287 (649)
T ss_dssp             TTSEEEEEEECSCEEEEEEEETTSCEEEEECCCSSCBCEEEEEEECCT----------TTTTCCCHHHHTTSSSGGGCEE
T ss_pred             CceEEEeeeecccceeeEEEeCCCcEEeeeecccCcccCcceeeEecc----------cccccccccccccccccCCcEE
Confidence            999999999999999999999999999999988 33335678999854          346799877777767  99999


Q ss_pred             EEEe-----chhhHHHHhcCceEEEe-ccCCCccccccCCCeEeecHHHHHHHHHHHhcCCCcEEEEeeCceeecccCCC
Q 047417          366 VCLH-----EEKGYEAAKTGAVAMIT-GASGTFSASYGFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSP  439 (458)
Q Consensus       366 lv~r-----~~k~~~a~~aGA~gvii-~~~g~~~~~~~~iP~~~I~~~~G~~L~~~~~~~~~~~~~i~~~~~~~~~~~~~  439 (458)
                      ||+|     .+|..+++++||+|+|| |....+....+.+|+++|+.++|+.|++|++.+.+++++|.+..+.++..+++
T Consensus       288 lc~~g~~~~~~k~~~~~~~Ga~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~  367 (649)
T 3i6s_A          288 ICDDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAP  367 (649)
T ss_dssp             EECCCSCHHHHHHHHHHHTCSEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCC
T ss_pred             EEeCCCccHHHHHHHHHhcCceEEEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCC
Confidence            9999     78999999999999999 44334555678999999999999999999999999999999998888888899


Q ss_pred             ccccccCCCCCCCCCCCCC
Q 047417          440 AVASFSSRGPNRIDPSIIK  458 (458)
Q Consensus       440 ~~s~FSS~GP~~~~p~ilK  458 (458)
                      .|++||||||+...|+|||
T Consensus       368 ~va~FSSrGP~~~~~~ilK  386 (649)
T 3i6s_A          368 VVAASSARGPSRSYLGISK  386 (649)
T ss_dssp             EECTTSCCSSCTTCTTSCS
T ss_pred             cccccCCCCCCCCCCCccC
Confidence            9999999999998787777

PyMOL of 3i6s

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}	Back alignment and structure

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*	Back alignment and structure

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*	Back alignment and structure

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A	Back alignment and structure

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}	Back alignment and structure

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A	Back alignment and structure

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}	Back alignment and structure

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1	Back alignment and structure

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1	Back alignment and structure

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E	Back alignment and structure

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...	Back alignment and structure

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*	Back alignment and structure

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*	Back alignment and structure

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...	Back alignment and structure

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A	Back alignment and structure

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A	Back alignment and structure

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A	Back alignment and structure

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*	Back alignment and structure

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}	Back alignment and structure

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*	Back alignment and structure

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}	Back alignment and structure

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}	Back alignment and structure

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A	Back alignment and structure

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...	Back alignment and structure

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}	Back alignment and structure

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A	Back alignment and structure

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A	Back alignment and structure

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A	Back alignment and structure

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1	Back alignment and structure

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*	Back alignment and structure

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}	Back alignment and structure

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}	Back alignment and structure

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A	Back alignment and structure

>1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A*	Back alignment and structure

>3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens}	Back alignment and structure

>3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B	Back alignment and structure

>2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P	Back alignment and structure

>2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P	Back alignment and structure

>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*	Back alignment and structure

>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A	Back alignment and structure

>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}	Back alignment and structure

>3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A*	Back alignment and structure

>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A	Back alignment and structure

>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...	Back alignment and structure

>2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B	Back alignment and structure

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		458
d1v6ca_		435	c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud	2e-10
d1r6va_		671	c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni	2e-05
d1to2e_		281	c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie	3e-05
d1dbia_		280	c.41.1.1 (A:) Thermostable serine protease {Bacill	3e-05

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 37/301 (12%)

Query: 157 RDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHG 216
            + + HGTH     A                   G  P      + V  ++E     +  
Sbjct: 60  GNNNAHGTHVAGTIAAI----------ANNEGVVGVMPNQNANIHIVKVFNEAGWGYSSS 109

Query: 217 NDCTEQDTIEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGN 276
                   +         G +++T+SLG         + +         NGVL +AAAGN
Sbjct: 110 LVAAIDTCVN------SGGANVVTMSLGGSGSTTTERNAL----NTHYNNGVLLIAAAGN 159

Query: 277 GGPEPQTINNMAPWMLTVGASTMDREFAGYVTLGNNKRLRGASLSIDMPRKSYPLISGED 336
            G    +       +++V A   + + A +    +   + G   +I         ++  +
Sbjct: 160 AGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILST------VTVGE 213

Query: 337 ARIANATDKDARSCKPGTLDRKKVQGRILVCLHEEKGYEAAKTGAVAMITGASGTFSASY 396
            R+A+ T         G +   ++               A+ TGA+A  T    +FS   
Sbjct: 214 GRLADITIGGQSYFSNGVVPHNRLTPSGTSY--APAPINASATGALAECTVNGTSFSCGN 271

Query: 397 GFLPVTKLKIKDFEAVLDYIKSTKDAKAFMTDAQTEFAIEPSPAVASFSSRGPNRIDPSI 456
                    + +   +++ + +   +   +   +          +   +S  P   +P +
Sbjct: 272 ---------MANKICLVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFL 322

Query: 457 I 457
           +
Sbjct: 323 V 323

PyMOL of d1v6ca_

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671	Back information, alignment and structure

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281	Back information, alignment and structure

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		458
d1dbia_		280	Thermostable serine protease {Bacillus sp., AK.1 [	100.0
d1v6ca_		435	Alkaline serine protease Apa1 {Pseudoalteromonas s	100.0
d1r6va_		671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	100.0
d1thma_		279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	99.97
d1to2e_		281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	99.97
d1gcia_		269	Subtilisin {Bacillus lentus [TaxId: 1467]}	99.97
d1r0re_		274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	99.97
d2pwaa1		279	Proteinase K {Fungus (Tritirachium album), strain	99.94
d2ixta1		309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	99.93
d1wmda2		318	Alkaline serine protease kp-43, N-terminal domain	99.91
d1p8ja2		334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	99.9
d2id4a2		339	Kexin, N-terminal domain {Baker's yeast (Saccharom	99.87
d1t1ga_		357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	99.69
d1ga6a_		369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	99.66
d1scjb_		71	Subtilisin prosegment {Bacillus subtilis [TaxId: 1	97.92
d1de4c2		193	Transferrin receptor ectodomain, apical domain {Hu	97.74
d1v5ib1		72	Proteinase A inhibitor 1, POIA1 {Oyster mushroom (	97.48
d3bi1a2		233	Glutamate carboxypeptidase II {Human (Homo sapiens	97.4

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

Probab=100.00  E-value=1.6e-33  Score=272.79  Aligned_cols=186  Identities=22%  Similarity=0.241  Sum_probs=148.9

Q ss_pred             CCChhhhccCCCCCCcEEEEeccCCCCCCCCCCCCCCCCCCCcccccccCCCCCCccCCceeeeeEecCCCccccccCCC
Q 047417           65 IPSNSTWERARFGEDVIIGGIDSGIWPESESFSDEEMGPIPSKWRGACQNDDHYGVECNRKLIGIRHYNKGLISSATKRN  144 (458)
Q Consensus        65 ~~~~~~~~~~~~G~Gv~VaViDtGid~~Hp~f~~~~~~~~~~~~~g~~~~~~~~~~~~n~k~~~~~~~~~~~~~~~~~g~  144 (458)
                      +.++.+|+++.+|+||+|||||||||.+||+|.++                          ++..++|...         
T Consensus        18 i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~--------------------------~~~~~~~~~~---------   62 (280)
T d1dbia_          18 TYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK--------------------------VIKGYDFVDN---------   62 (280)
T ss_dssp             GTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT--------------------------EEEEEETTTT---------
T ss_pred             CCHHHHHhccCCCCCeEEEEEccCcCCCChhhcCC--------------------------eeecccccCC---------
Confidence            45679999999999999999999999999999753                          5555555432         


Q ss_pred             CCcCCCCCCCCCCCCCCChhhhHHhhccCCcccCCccccCCCCeeeeecCCCeEEEEEeecCCCCCcCCCCCCCCCHHHH
Q 047417          145 PAFDILPKLKTGRDLDGHGTHTLSAAAGNFVQYVGAFCNHRYGTAKGGSPRARVASYKVCWYSEDDHNAAHGNDCTEQDT  224 (458)
Q Consensus       145 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~~GvAP~A~l~~~kv~~~~~~~~~~~~g~~~~~~~i  224 (458)
                              ...+.|..+|||||||+|+|...         ....+.||||+|+|+.+|+++...         .+..+++
T Consensus        63 --------~~~~~d~~~HGT~vag~i~~~~~---------~~~~~~GvAp~a~l~~~~v~~~~~---------~~~~~~~  116 (280)
T d1dbia_          63 --------DYDPMDLNNHGTHVAGIAAAETN---------NATGIAGMAPNTRILAVRALDRNG---------SGTLSDI  116 (280)
T ss_dssp             --------BSCCCCSSSHHHHHHHHHHCCCS---------SSSSCCCSSSSCEEEEEECCCTTS---------CCCHHHH
T ss_pred             --------CCccccccccccceeEeeecccc---------CCCceeEEeccCEEEEEEEeCCCC---------CcCHHHH
Confidence                    12466889999999999998732         234478899999999999998763         6789999


Q ss_pred             HHHHHHHHHcCCcEEEecccCCCCCCCcccHHHHHHHHHHhCCcEEEEecCCCCCCCCCcccCCCccEEecccccCccee
Q 047417          225 IEAFDDAIHDGVDIITVSLGYDKIADFLSDGVVIGAFHATMNGVLTVAAAGNGGPEPQTINNMAPWMLTVGASTMDREFA  304 (458)
Q Consensus       225 ~~ai~~a~~~g~~VIn~SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~a~~vitVgA~~~~~~~~  304 (458)
                      ++||+|++++|++|||||||..    ........++..+.++|+++|+||||+|......++..++||+|||++.+...+
T Consensus       117 ~~ai~~a~~~g~~iin~S~g~~----~~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~~~~a  192 (280)
T d1dbia_         117 ADAIIYAADSGAEVINLSLGCD----CHTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLA  192 (280)
T ss_dssp             HHHHHHHHHTTCSEEEECCSSC----CCCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTTSCBC
T ss_pred             HHHHHHHHHcCCcEeecccccc----ccchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCCCCcC
Confidence            9999999999999999999987    344566677888999999999999999987778888999999999999998888


Q ss_pred             eeEEeCCceEE
Q 047417          305 GYVTLGNNKRL  315 (458)
Q Consensus       305 ~~~~~g~~~~~  315 (458)
                      .|+++|....+
T Consensus       193 ~~S~~g~~~d~  203 (280)
T d1dbia_         193 SFSNYGTWVDV  203 (280)
T ss_dssp             TTBCCSTTCCE
T ss_pred             CcCCCCCcccc
Confidence            88888765443

PyMOL of d1dbia_

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}	Back information, alignment and structure

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}	Back information, alignment and structure

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}	Back information, alignment and structure

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}	Back information, alignment and structure

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}	Back information, alignment and structure

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}	Back information, alignment and structure

>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]}	Back information, alignment and structure

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}	Back information, alignment and structure

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}	Back information, alignment and structure

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}	Back information, alignment and structure

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}	Back information, alignment and structure

>d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]}	Back information, alignment and structure

>d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure