Citrus Sinensis ID: 047434

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90---
Protein Sequence
MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE
Secondary Structure (PSIPRED)
cccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdknmlagldglpeqDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE
Flexible Loop (DISEMBL)
MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRktlqkqeetcVMRCAEKFLKHSMRVGMRFAELNSQAATQE
Low Complexity Region (SEG)
MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE
Disordered region (IsUnstruct)
*********************AMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRF***********
Disordered Region (DISOPRED)
****************************LRDSLRMYNSLVERCFNDCVDNFTR******EETCVMRCAEKFLKHSMRVGM*************
Disordered Region (DISEMBL)
MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAEL********
Disordered Region (DISPRO)
****MLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAA***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	93	2.2.26 [Sep-21-2011]
Q9XGX9	93	Mitochondrial import inne	yes	no	1.0	1.0	0.838	1e-41
Q9XGX7	93	Mitochondrial import inne	yes	no	1.0	1.0	0.795	4e-38
Q9XGX8	93	Mitochondrial import inne	N/A	no	1.0	1.0	0.774	5e-37
P57745	87	Mitochondrial import inne	N/A	no	0.849	0.908	0.493	2e-19
Q757S0	87	Mitochondrial import inne	yes	no	0.849	0.908	0.481	2e-18
O74700	87	Mitochondrial import inne	yes	no	0.849	0.908	0.468	3e-18
Q6CM57	87	Mitochondrial import inne	yes	no	0.849	0.908	0.468	1e-17
Q6FRT3	87	Mitochondrial import inne	yes	no	0.849	0.908	0.455	1e-17
Q6C6Z2	85	Mitochondrial import inne	yes	no	0.849	0.929	0.468	2e-17
P0CR96	89	Mitochondrial import inne	yes	no	0.784	0.820	0.506	1e-16

>sp|Q9XGX9|TIM9_ARATH Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thaliana GN=TIM9 PE=1 SV=2

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 87/93 (93%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MD +M+AGLDGLPE+DKA+MA+MID LQLRDSLRMYNSLVERCF DCVD+FTRK+LQKQE
Sbjct: 1  MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCVMRCAEKFLKH+MRVGMRFAELN  A TQ+
Sbjct: 61 ETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9XGX7|TIM9_ORYSJ Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica GN=TIM9 PE=3 SV=2

 Score =  156 bits (394), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 80/93 (86%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDK+ML  LDGLPE+DK RMAAM+D LQ+RDSLRMYNSLVERCF DCVD F RKTL KQE
Sbjct: 1  MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          E+CV RCAEKFLKHSMRVGMRFAELN   AT +
Sbjct: 61 ESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9XGX8|TIM9_MESCR Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum GN=TIM9 PE=3 SV=1

 Score =  152 bits (385), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 81/93 (87%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDKNML  LD LPE+DK +MA+MI+ LQ+RDSLRMYN+LVERCF DCVD+F RKTL KQE
Sbjct: 1  MDKNMLGDLDNLPEEDKLKMASMIEQLQIRDSLRMYNNLVERCFTDCVDSFRRKTLDKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCV RCAEKFLKHSMRVG+RFAELN  AAT +
Sbjct: 61 ETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. May also be required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P57745|TIM9_ZYGBA Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii GN=TIM9 PE=3 SV=1

 Score = 94.0 bits (232), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 60/79 (75%)

Query: 9  LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
          +D L  +++   + +I+H Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+ RC+
Sbjct: 1  MDSLNPREQQEFSKLIEHKQMKDFMRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCS 60

Query: 69 EKFLKHSMRVGMRFAELNS 87
          EKFLKHS RVG+RF E N+
Sbjct: 61 EKFLKHSERVGLRFQEQNA 79

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Zygosaccharomyces bailii (taxid: 4954)

>sp|Q757S0|TIM9_ASHGO Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=TIM9 PE=3 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/79 (48%), Positives = 59/79 (74%)

Query: 9  LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
          +D L  +++     +++  Q++D +R+Y++LVERCF+DCV++FT   L  +E+TC+MRC+
Sbjct: 1  MDALNSREQQEFQRVVEQKQMKDFMRLYSNLVERCFSDCVNDFTSSKLTSKEQTCIMRCS 60

Query: 69 EKFLKHSMRVGMRFAELNS 87
          EKFLKHS RVG RF E N+
Sbjct: 61 EKFLKHSERVGQRFQEQNA 79

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|O74700|TIM9_YEAST Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TIM9 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 58/79 (73%)

Query: 9  LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
          +D L  +++     +++  Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+M+C+
Sbjct: 1  MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCS 60

Query: 69 EKFLKHSMRVGMRFAELNS 87
          EKFLKHS RVG RF E N+
Sbjct: 61 EKFLKHSERVGQRFQEQNA 79

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space. Compared to TIM10, it may have a strong structural role.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6CM57|TIM9_KLULA Mitochondrial import inner membrane translocase subunit TIM9 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TIM9 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 58/79 (73%)

Query: 9  LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
          +D L  +++     +++  Q++D +R+Y++LVERCF+DCV++FT   L  +E+ C+MRC+
Sbjct: 1  MDQLNGKEQQEFQKIVEQKQMKDFMRLYSNLVERCFSDCVNDFTSAKLTSKEQNCIMRCS 60

Query: 69 EKFLKHSMRVGMRFAELNS 87
          EKFLKHS RVG RF E N+
Sbjct: 61 EKFLKHSERVGQRFQEQNA 79

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q6FRT3|TIM9_CANGA Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TIM9 PE=3 SV=1

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 57/79 (72%)

Query: 9  LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
          +D L  +++     +++  Q++D +R+Y+ LVERCF DCV++FT   L  +EE+C+++C+
Sbjct: 1  MDQLNAKEQQEFQKLVEQKQMKDFMRLYSGLVERCFTDCVNDFTSSKLTSKEESCILKCS 60

Query: 69 EKFLKHSMRVGMRFAELNS 87
          EKFLKHS RVG RF E N+
Sbjct: 61 EKFLKHSERVGQRFQEQNA 79

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q6C6Z2|TIM9_YARLI Mitochondrial import inner membrane translocase subunit TIM9 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TIM9 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/79 (46%), Positives = 58/79 (73%)

Query: 9  LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
          +D L  +++     +++  Q++D +R+Y+SLV+RCF DCV++FT K L  +EE+C+ +C+
Sbjct: 1  MDQLNNREQQEFQQLVEQKQMKDFMRLYSSLVQRCFTDCVNDFTSKALSSREESCLEKCS 60

Query: 69 EKFLKHSMRVGMRFAELNS 87
          EKFLKHS RVG RF E N+
Sbjct: 61 EKFLKHSERVGQRFQEQNA 79

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|P0CR96|TIM9_CRYNJ Mitochondrial import inner membrane translocase subunit TIM9 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TIM9 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 52/73 (71%)

Query: 16 DKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHS 75
          ++A M+ +I+  Q++D +R+Y+ LVE+CFN C  +FT K L   E TCV  C +KFLKHS
Sbjct: 10 EQAHMSKVIEKKQMQDFMRLYSGLVEKCFNACAQDFTSKALTTNETTCVQNCTDKFLKHS 69

Query: 76 MRVGMRFAELNSQ 88
           RVG RFAE N++
Sbjct: 70 ERVGARFAEHNAE 82

Mitochondrial intermembrane chaperone that participates in the import and insertion of multi-pass transmembrane proteins into the mitochondrial inner membrane. Also required for the transfer of beta-barrel precursors from the TOM complex to the sorting and assembly machinery (SAM complex) of the outer membrane. Acts as a chaperone-like protein that protects the hydrophobic precursors from aggregation and guide them through the mitochondrial intermembrane space.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
15231455	93	mitochondrial import inner membrane tran	1.0	1.0	0.838	5e-40
21617942	93	mitochondrial import inner membrane tran	1.0	1.0	0.827	1e-39
297815812	93	hypothetical protein ARALYDRAFT_485026 [	1.0	1.0	0.827	2e-39
449440032	93	PREDICTED: mitochondrial import inner me	1.0	1.0	0.817	4e-38
284433774	96	mitochondrial import inner membrane tran	1.0	0.968	0.774	1e-37
255584226	96	mitochondrial import inner membrane tran	1.0	0.968	0.806	2e-37
351724801	93	uncharacterized protein LOC100500613 [Gl	1.0	1.0	0.817	3e-37
224118052	95	predicted protein [Populus trichocarpa]	1.0	0.978	0.774	1e-36
351725225	93	uncharacterized protein LOC100526964 [Gl	1.0	1.0	0.806	1e-36
5107214	93	small zinc finger-like protein [Oryza sa	1.0	1.0	0.795	1e-36

>gi|15231455|ref|NP_190240.1| mitochondrial import inner membrane translocase subunit Tim9 [Arabidopsis thaliana] gi|12643936|sp|Q9XGX9.2|TIM9_ARATH RecName: Full=Mitochondrial import inner membrane translocase subunit TIM9; AltName: Full=Protein EMBRYO DEFECTIVE 2474 gi|6523059|emb|CAB62326.1| small zinc finger-like protein TIM9 [Arabidopsis thaliana] gi|15028235|gb|AAK76614.1| putative small zinc finger protein TIM9 [Arabidopsis thaliana] gi|19310825|gb|AAL85143.1| putative small zinc finger protein TIM9 [Arabidopsis thaliana] gi|332644651|gb|AEE78172.1| mitochondrial import inner membrane translocase subunit Tim9 [Arabidopsis thaliana]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 78/93 (83%), Positives = 87/93 (93%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MD +M+AGLDGLPE+DKA+MA+MID LQLRDSLRMYNSLVERCF DCVD+FTRK+LQKQE
Sbjct: 1  MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCVMRCAEKFLKH+MRVGMRFAELN  A TQ+
Sbjct: 61 ETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21617942|gb|AAM66992.1| mitochondrial import inner membrane translocase subunit Tim9 [Arabidopsis thaliana]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 87/93 (93%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MD +M+AGLDGLPE+DKA+MA+MID LQLRDSLR+YNSLVERCF DCVD+FTRK+LQKQE
Sbjct: 1  MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRLYNSLVERCFVDCVDSFTRKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCVMRCAEKFLKH+MRVGMRFAELN  A TQ+
Sbjct: 61 ETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297815812|ref|XP_002875789.1| hypothetical protein ARALYDRAFT_485026 [Arabidopsis lyrata subsp. lyrata] gi|297321627|gb|EFH52048.1| hypothetical protein ARALYDRAFT_485026 [Arabidopsis lyrata subsp. lyrata]

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 77/93 (82%), Positives = 86/93 (92%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MD +M+AGLDGLPE+DKA MA+MID LQLRDSL+MYNSLVERCF DCVD+FTRK+LQKQE
Sbjct: 1  MDASMMAGLDGLPEEDKATMASMIDQLQLRDSLKMYNSLVERCFVDCVDSFTRKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCVMRCAEKFLKH+MRVGMRFAELN  A TQ+
Sbjct: 61 ETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440032|ref|XP_004137789.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim9-like [Cucumis sativus] gi|449483383|ref|XP_004156574.1| PREDICTED: mitochondrial import inner membrane translocase subunit Tim9-like [Cucumis sativus]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 82/93 (88%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDKNMLA LDGLPE+DK +MA MID LQ+RDSLRMYNSLVERCF DC+DNF RK+L KQE
Sbjct: 1  MDKNMLADLDGLPEEDKIKMATMIDQLQIRDSLRMYNSLVERCFTDCIDNFQRKSLTKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCV RCAEKFLKHSMRVGMRFAELN  AAT +
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATSD 93

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284433774|gb|ADB85093.1| mitochondrial import inner membrane translocase [Jatropha curcas]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 85/93 (91%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDKN+L GL+G+PE+DK RMAA ID LQ+RDS+RMYNS+VERCFNDCVD+FTRK+LQKQE
Sbjct: 1  MDKNILQGLEGIPEEDKMRMAATIDQLQVRDSMRMYNSVVERCFNDCVDSFTRKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCV+RCAEKFLKHSMRVG+RF ELN+  AT +
Sbjct: 61 ETCVIRCAEKFLKHSMRVGLRFGELNNMQATPD 93

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584226|ref|XP_002532851.1| mitochondrial import inner membrane translocase subunit tim9, putative [Ricinus communis] gi|223527388|gb|EEF29529.1| mitochondrial import inner membrane translocase subunit tim9, putative [Ricinus communis]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 84/93 (90%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDKNML GLD LPE+DK RMA +I+ LQ+RDS+RMYNS+VERCF DCVDNFTRK+LQKQE
Sbjct: 1  MDKNMLQGLDNLPEEDKLRMANLIEQLQVRDSMRMYNSVVERCFIDCVDNFTRKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCV RCAEKFLKHSMRVGMRFAELN+ AAT +
Sbjct: 61 ETCVTRCAEKFLKHSMRVGMRFAELNNMAATPD 93

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724801|ref|NP_001236814.1| uncharacterized protein LOC100500613 [Glycine max] gi|255630754|gb|ACU15738.1| unknown [Glycine max]

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 76/93 (81%), Positives = 80/93 (86%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDK+MLA LD LPE DK RM  MID LQ+RDSLRMYNSLVERCFNDCVD F  K+LQKQE
Sbjct: 1  MDKSMLADLDSLPEADKQRMTVMIDQLQIRDSLRMYNSLVERCFNDCVDTFKHKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCV RCAEKFLKHSMRVGMRFAELN  AATQ+
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATQD 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118052|ref|XP_002317720.1| predicted protein [Populus trichocarpa] gi|118484936|gb|ABK94333.1| unknown [Populus trichocarpa] gi|222858393|gb|EEE95940.1| predicted protein [Populus trichocarpa]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 86/93 (92%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDK+ML G++GL ++D+ RM +MI++LQLRDSL+MYNSLVERCFNDCVD+FTRK+LQKQE
Sbjct: 1  MDKDMLGGMEGLSKEDQTRMLSMIENLQLRDSLKMYNSLVERCFNDCVDSFTRKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCVMRCAEKF+KHSMRVGMRFAELN  AAT +
Sbjct: 61 ETCVMRCAEKFMKHSMRVGMRFAELNQGAATPD 93

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725225|ref|NP_001236573.1| uncharacterized protein LOC100526964 [Glycine max] gi|255631266|gb|ACU16000.1| unknown [Glycine max]

 Score =  157 bits (396), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 75/93 (80%), Positives = 80/93 (86%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDK+MLA LD LPE DK RM  MID LQ+RDSLRMYNSLVERCF+DCVD F  K+LQKQE
Sbjct: 1  MDKSMLADLDSLPEADKQRMTVMIDQLQIRDSLRMYNSLVERCFSDCVDTFKHKSLQKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          ETCV RCAEKFLKHSMRVGMRFAELN  AATQ+
Sbjct: 61 ETCVRRCAEKFLKHSMRVGMRFAELNQGAATQD 93

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|5107214|gb|AAD40019.1|AF150113_1 small zinc finger-like protein [Oryza sativa]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/93 (79%), Positives = 80/93 (86%)

Query: 1  MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
          MDK+ML  LDGLPE+DK RMAAM+D LQ+RDSLRMYNSLVERCF DCVD F RKTL KQE
Sbjct: 1  MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRDSLRMYNSLVERCFTDCVDTFRRKTLDKQE 60

Query: 61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
          E+CV RCAEKFLKHSMRVGMRFAELN   AT +
Sbjct: 61 ESCVRRCAEKFLKHSMRVGMRFAELNQGVATTD 93

Source: Oryza sativa

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	93
TAIR|locus:2075195	93	TIM9 "AT3G46560" [Arabidopsis	1.0	1.0	0.838	7.8e-39
SGD|S000007256	87	TIM9 "Essential protein of the	0.849	0.908	0.468	1.4e-18
POMBASE|SPCC24B10.05	84	tim9 "Tim9-Tim10 complex subun	0.860	0.952	0.425	3.7e-16
ASPGD|ASPL0000064435	90	AN7649 [Emericella nidulans (t	0.849	0.877	0.443	6e-16
GENEDB_PFALCIPARUM|PF13_0358	92	PF13_0358 "mitochondrial impor	0.924	0.934	0.348	2.1e-13
UNIPROTKB|Q8ID24	92	PF13_0358 "Mitochondrial impor	0.924	0.934	0.348	2.1e-13
WB|WBGene00006572	90	tin-9.1 [Caenorhabditis elegan	0.645	0.666	0.476	4.5e-11
UNIPROTKB|G4N7B1	87	MGG_06427 "Mitochondrial impor	0.913	0.977	0.305	9.4e-11
UNIPROTKB|Q2KIV2	89	TIMM9 "Mitochondrial import in	0.741	0.775	0.424	1.5e-10
UNIPROTKB|Q9Y5J7	89	TIMM9 "Mitochondrial import in	0.741	0.775	0.424	1.5e-10

TAIR|locus:2075195 TIM9 "AT3G46560" [Arabidopsis thaliana (taxid:3702)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 78/93 (83%), Positives = 87/93 (93%)

Query:     1 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
             MD +M+AGLDGLPE+DKA+MA+MID LQLRDSLRMYNSLVERCF DCVD+FTRK+LQKQE
Sbjct:     1 MDASMMAGLDGLPEEDKAKMASMIDQLQLRDSLRMYNSLVERCFVDCVDSFTRKSLQKQE 60

Query:    61 ETCVMRCAEKFLKHSMRVGMRFAELNSQAATQE 93
             ETCVMRCAEKFLKH+MRVGMRFAELN  A TQ+
Sbjct:    61 ETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0006626 "protein targeting to mitochondrion" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0001510 "RNA methylation" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

SGD|S000007256 TIM9 "Essential protein of the mitochondrial intermembrane space" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 37/79 (46%), Positives = 58/79 (73%)

Query:     9 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
             +D L  +++     +++  Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+M+C+
Sbjct:     1 MDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCS 60

Query:    69 EKFLKHSMRVGMRFAELNS 87
             EKFLKHS RVG RF E N+
Sbjct:    61 EKFLKHSERVGQRFQEQNA 79

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IGI;IDA;IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0008565 "protein transporter activity" evidence=IGI;IDA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IDA

GO:0042721 "mitochondrial inner membrane protein insertion complex" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISM

GO:0051082 "unfolded protein binding" evidence=IDA

POMBASE|SPCC24B10.05 tim9 "Tim9-Tim10 complex subunit Tim9 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 201 (75.8 bits), Expect = 3.7e-16, P = 3.7e-16
 Identities = 34/80 (42%), Positives = 55/80 (68%)

Query:     9 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
             +D L  +++  +  +++  QL++ L MY++L + CF+DCV +FT   L  +E  C+ +CA
Sbjct:     1 MDRLNVKEQEHLTQVLEAKQLKEYLNMYSTLTQNCFSDCVQDFTSSKLSNKESECIAKCA 60

Query:    69 EKFLKHSMRVGMRFAELNSQ 88
             +KFLKHS RVG RFAE N++
Sbjct:    61 DKFLKHSERVGQRFAEFNAK 80

GO:0005634 "nucleus" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0008565 "protein transporter activity" evidence=ISS

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=ISS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS

GO:0046872 "metal ion binding" evidence=IEA

ASPGD|ASPL0000064435 AN7649 [Emericella nidulans (taxid:162425)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 35/79 (44%), Positives = 56/79 (70%)

Query:     9 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
             +DGL   ++  +A  ++  Q+++ + MY+ LV+RCF+DCV++FT K+L  +EE CVMRC 
Sbjct:     1 MDGLNAAEQRELANRMERKQMKEFMTMYSKLVQRCFDDCVNDFTTKSLISREEGCVMRCV 60

Query:    69 EKFLKHSMRVGMRFAELNS 87
             +KF+K S R+  RF E N+
Sbjct:    61 DKFMKGSQRLNERFQEQNA 79

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042721 "mitochondrial inner membrane protein insertion complex" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GENEDB_PFALCIPARUM|PF13_0358 PF13_0358 "mitochondrial import inner membrane translocase, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 31/89 (34%), Positives = 54/89 (60%)

Query:     1 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
             M+K++   L    + D+ ++   I+  +  D++  YNS+VERCFN+C+ +F  K L   E
Sbjct:     1 MEKSL--DLSAFNKSDRDKILKKINKAEYEDTMNTYNSIVERCFNECITSFRSKELDNNE 58

Query:    61 ETCVMRCAEKFLKHSMRVGMRFAE-LNSQ 88
               C++ C +KF   S R+GM+F + LN++
Sbjct:    59 NNCILNCVKKFSIFSQRIGMKFTQNLNNE 87

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q8ID24 PF13_0358 "Mitochondrial import inner membrane translocase, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 31/89 (34%), Positives = 54/89 (60%)

Query:     1 MDKNMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQE 60
             M+K++   L    + D+ ++   I+  +  D++  YNS+VERCFN+C+ +F  K L   E
Sbjct:     1 MEKSL--DLSAFNKSDRDKILKKINKAEYEDTMNTYNSIVERCFNECITSFRSKELDNNE 58

Query:    61 ETCVMRCAEKFLKHSMRVGMRFAE-LNSQ 88
               C++ C +KF   S R+GM+F + LN++
Sbjct:    59 NNCILNCVKKFSIFSQRIGMKFTQNLNNE 87

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

WB|WBGene00006572 tin-9.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 30/63 (47%), Positives = 40/63 (63%)

Query:    30 RDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAE---LN 86
             RD L  YN + E+CFN CV+ F  +T+  +EE+C   C +KFLK + RV  RF E   LN
Sbjct:    11 RDFLTQYNLVAEQCFNSCVNEFGSRTVSGKEESCANNCLDKFLKMTQRVSQRFQEHQLLN 70

Query:    87 SQA 89
             +QA
Sbjct:    71 AQA 73

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA;IMP

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040014 "regulation of multicellular organism growth" evidence=IMP

UNIPROTKB|G4N7B1 MGG_06427 "Mitochondrial import inner membrane translocase subunit tim-9" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 26/85 (30%), Positives = 48/85 (56%)

Query:     9 LDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCA 68
             +D L   +   +   +   Q+++ + +++ LV+ CF  C+D+F+ K L  +E  C+ RC 
Sbjct:     1 MDQLNNNEMRELEQRMQKRQVKEFVNIFSKLVDHCFMSCIDDFSSKALNSRESGCIQRCV 60

Query:    69 EKFLKHSMRVGMRFAELNSQAATQE 93
              K +    R+G RF EL++Q A Q+
Sbjct:    61 IKDMAAQQRLGERFQELSAQMANQQ 85

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q2KIV2 TIMM9 "Mitochondrial import inner membrane translocase subunit Tim9" [Bos taurus (taxid:9913)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query:    20 MAAMI---DHL-QLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHS 75
             MAA I   D + Q ++ L  YN L E CF DCV +FT + ++ +E TC   C +K+LK +
Sbjct:     1 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT 60

Query:    76 MRVGMRFAELNSQ 88
              R+ MRF E + Q
Sbjct:    61 QRISMRFQEYHIQ 73

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0072321 "chaperone-mediated protein transport" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0045039 "protein import into mitochondrial inner membrane" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q9Y5J7 TIMM9 "Mitochondrial import inner membrane translocase subunit Tim9" [Homo sapiens (taxid:9606)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/73 (42%), Positives = 44/73 (60%)

Query:    20 MAAMI---DHL-QLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHS 75
             MAA I   D + Q ++ L  YN L E CF DCV +FT + ++ +E TC   C +K+LK +
Sbjct:     1 MAAQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMT 60

Query:    76 MRVGMRFAELNSQ 88
              R+ MRF E + Q
Sbjct:    61 QRISMRFQEYHIQ 73

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0008270 "zinc ion binding" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=IDA;TAS

GO:0006626 "protein targeting to mitochondrion" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042719 "mitochondrial intermembrane space protein transporter complex" evidence=IDA;TAS

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0045039 "protein import into mitochondrial inner membrane" evidence=ISS;IDA

GO:0005215 "transporter activity" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0072321 "chaperone-mediated protein transport" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XGX7	TIM9_ORYSJ	No assigned EC number	0.7956	1.0	1.0	yes	no
O74700	TIM9_YEAST	No assigned EC number	0.4683	0.8494	0.9080	yes	no
Q9XGX9	TIM9_ARATH	No assigned EC number	0.8387	1.0	1.0	yes	no
Q9XGX8	TIM9_MESCR	No assigned EC number	0.7741	1.0	1.0	N/A	no
Q757S0	TIM9_ASHGO	No assigned EC number	0.4810	0.8494	0.9080	yes	no
Q6CM57	TIM9_KLULA	No assigned EC number	0.4683	0.8494	0.9080	yes	no
Q4WIQ2	TIM9_ASPFU	No assigned EC number	0.4177	0.8494	0.8777	yes	no
P0CR96	TIM9_CRYNJ	No assigned EC number	0.5068	0.7849	0.8202	yes	no
Q6BU42	TIM9_DEBHA	No assigned EC number	0.4177	0.8494	0.8977	yes	no
Q9Y8A7	TIM9_EMENI	No assigned EC number	0.4430	0.8494	0.8777	yes	no
Q6FRT3	TIM9_CANGA	No assigned EC number	0.4556	0.8494	0.9080	yes	no
Q9P7K0	TIM9_SCHPO	No assigned EC number	0.4166	0.9032	1.0	yes	no
Q6C6Z2	TIM9_YARLI	No assigned EC number	0.4683	0.8494	0.9294	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	93
pfam02953	66	pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc fin	9e-17

>gnl|CDD|202484 pfam02953, zf-Tim10_DDP, Tim10/DDP family zinc finger

 Score = 67.3 bits (165), Expect = 9e-17
 Identities = 24/59 (40%), Positives = 31/59 (52%)

Query: 27 LQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAEL 85
          LQ  +   + N L E CF  CV  F   +L K EE+C+ RC EK+L  + RV  R  E 
Sbjct: 8  LQKANFQELINKLTENCFKKCVTKFPGSSLSKGEESCLDRCVEKYLDANNRVSKRLQER 66

Putative zinc binding domain with four conserved cysteine residues. This domain is found in the human disease protein TIMM8A. Members of this family such as Tim9 and Tim10 are involved in mitochondrial protein import. Members of this family seem to be localised to the mitochondrial intermembrane space. Length = 66

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	93
KOG3489	86	consensus Mitochondrial import inner membrane tran	99.93
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	99.92
KOG3479	83	consensus Mitochondrial import inner membrane tran	99.87
KOG1733	97	consensus Mitochondrial import inner membrane tran	99.85
KOG3480	90	consensus Mitochondrial import inner membrane tran	99.85
KOG3377	143	consensus Uncharacterized conserved protein [Funct	90.32
PF05811	131	DUF842: Eukaryotic protein of unknown function (DU	89.96
KOG3489	86	consensus Mitochondrial import inner membrane tran	84.69

>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.7e-25  Score=140.86  Aligned_cols=79  Identities=20%  Similarity=0.508  Sum_probs=65.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047434            8 GLDGLPEQDKARMAAMIDHLQLRD-SLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELN   86 (93)
Q Consensus         8 ~~~~l~~~~~~~~~~~~q~~q~k~-~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~   86 (93)
                      ++.+|++. .++++++++.++.|+ |.+++|++|+.||+|||.+ ++++||++|++|+.|||+||||++.+|.+||+.+.
T Consensus         3 ~~a~l~~~-~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~-~~sklds~~e~ClsnCV~RfiDts~~I~~r~~~~~   80 (86)
T KOG3489|consen    3 DLAALDAN-DPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEK-PGSKLDSSEETCLSNCVNRFIDTSLFIVKRLAQMN   80 (86)
T ss_pred             chhhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45555333 366666776666665 5567999999999999999 66999999999999999999999999999999877


Q ss_pred             Hh
Q 047434           87 SQ   88 (93)
Q Consensus        87 ~~   88 (93)
                      ++
T Consensus        81 ~~   82 (86)
T KOG3489|consen   81 QG   82 (86)
T ss_pred             cc
Confidence            64

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.92  E-value=6.3e-25  Score=133.53  Aligned_cols=64  Identities=31%  Similarity=0.783  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047434           22 AMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAEL   85 (93)
Q Consensus        22 ~~~q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~   85 (93)
                      ++.++.+++.|..+||+|++.||+|||+++++++|+++|.+||+||++||++++.+|+++|+++
T Consensus         3 ~~~~~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~~   66 (66)
T PF02953_consen    3 QLMQEQQMKDFQELFNKLTERCFDKCVTKFPSSSLSSKEESCIDNCVDKYIDTNQFVSKRFQQM   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-TTSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4567788999999999999999999999999999999999999999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG3479 consensus Mitochondrial import inner membrane translocase, subunit TIM9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=5.5e-22  Score=125.81  Aligned_cols=65  Identities=57%  Similarity=0.961  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 047434           24 IDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQ   88 (93)
Q Consensus        24 ~q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~   88 (93)
                      .+..++++|+.+||+||+.||..||++|++++|+++|+.|+.+|++||+..++||++||++....
T Consensus         3 ~~~k~lkDFl~~YN~ltE~CF~dCV~dft~r~l~~~Ee~C~~~C~~Kflk~nqRv~qrf~e~~~~   67 (83)
T KOG3479|consen    3 QQIKQLKDFLTLYNKLTELCFSDCVDDFTTRDLSGKEETCVMRCAEKFLKMNQRVSQRFQELQAA   67 (83)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999987654

>KOG1733 consensus Mitochondrial import inner membrane translocase, subunit TIM13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=7.3e-21  Score=122.90  Aligned_cols=69  Identities=17%  Similarity=0.509  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047434           18 ARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS   87 (93)
Q Consensus        18 ~~~~~~~q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~   87 (93)
                      ..|.++.++..+.+..+++++|++.||+|||++ ||++|+++|..||++|++||||+|+.|++.|..+-+
T Consensus        21 ~~m~qVkqqlAvAnAqeLv~kisekCf~KCit~-PGssl~~~e~~Cis~CmdRyMdawniVSrty~sRlQ   89 (97)
T KOG1733|consen   21 ELMNQVKQQLAVANAQELVSKISEKCFDKCITK-PGSSLDSSEKSCISRCMDRYMDAWNIVSRTYISRLQ   89 (97)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457777778888889999999999999999999 999999999999999999999999999999986443

>KOG3480 consensus Mitochondrial import inner membrane translocase, subunits TIM10/TIM12 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.1e-21  Score=122.89  Aligned_cols=65  Identities=25%  Similarity=0.606  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 047434           24 IDHLQLRDSLRMYNSLVERCFNDCVDN-FTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQ   88 (93)
Q Consensus        24 ~q~~q~k~~~~~~~~lt~~Cf~kCv~~-~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~   88 (93)
                      +++.+++.+.++||+|+..|++|||+. |..++|+++|.+||||||.||+++|..|+++++++.++
T Consensus        16 ~Ae~E~emm~d~fNrl~~tC~~KCI~~~y~EaeLtKGE~~CiDRCVaKy~~~n~~vG~~lq~~~~~   81 (90)
T KOG3480|consen   16 MAELEVEMMSDMFNRLTNTCHKKCIPPRYKEAELTKGESVCIDRCVAKYLDVNEKVGKKLQAMGQG   81 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            678899999999999999999999986 88999999999999999999999999999999988754

>KOG3377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.32  E-value=1.9  Score=30.11  Aligned_cols=57  Identities=18%  Similarity=0.202  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCC----CCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047434           29 LRDSLRMYNSLVERCFNDCVDNFTRK----TLQKQEETCVMRCAEKFLKHSMRVGMRFAEL   85 (93)
Q Consensus        29 ~k~~~~~~~~lt~~Cf~kCv~~~~~~----~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~   85 (93)
                      +..|.+-+++-+-.|-+|=-.+.+.+    +.-....+|+.+||+.++.+---+.+++.+.
T Consensus        78 l~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~a  138 (143)
T KOG3377|consen   78 LGKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEA  138 (143)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            44455556666666665542222222    3445567899999999999988888888653

>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function

Probab=89.96  E-value=3.4  Score=28.00  Aligned_cols=58  Identities=21%  Similarity=0.354  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCC----CchhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047434           27 LQLRDSLRMYNSLVERCFNDCVDNFTRKT----LQKQEETCVMRCAEKFLKHSMRVGMRFAE   84 (93)
Q Consensus        27 ~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~----L~~~E~~Ci~nCv~kfld~~~~v~~~~~~   84 (93)
                      .++..|.+-+++-+-.|.++=-..++.+.    ....=..|+..||++|+..---|..|+.+
T Consensus        68 ~El~~FQ~rlqrC~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~  129 (131)
T PF05811_consen   68 NELEQFQNRLQRCVMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKK  129 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence            34555666677777777776554432111    11222579999999999998888888754

The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.

>KOG3489 consensus Mitochondrial import inner membrane translocase, subunit TIM8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.69  E-value=8.3  Score=24.79  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             hhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Q 047434            4 NMLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNS-LVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRF   82 (93)
Q Consensus         4 ~~~~~~~~l~~~~~~~~~~~~q~~q~k~~~~~~~~-lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~   82 (93)
                      +..++|+.-+++....++.+.|++++.+.++.++. -=++|+.+=-+++ +++=..-=..|++|=++--+....|+.+..
T Consensus         2 s~~a~l~~~~~el~~fl~~E~qk~k~~~~VHqft~~CWdKCi~~~~skl-ds~~e~ClsnCV~RfiDts~~I~~r~~~~~   80 (86)
T KOG3489|consen    2 SDLAALDANDPELQQFLEAETQKQKFQEQVHQFTEICWDKCIEKPGSKL-DSSEETCLSNCVNRFIDTSLFIVKRLAQMN   80 (86)
T ss_pred             CchhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34566777799999999999999999998877554 5689999977654 444477888999999888888877777654


Q ss_pred             H
Q 047434           83 A   83 (93)
Q Consensus        83 ~   83 (93)
                      +
T Consensus        81 ~   81 (86)
T KOG3489|consen   81 Q   81 (86)
T ss_pred             c
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	93
3dxr_A	89	Crystal Structure Of The Yeast Inter-Membrane Space		2e-19
2bsk_A	89	Crystal Structure Of The Tim9 Tim10 Hexameric Compl		1e-10
3dxr_B	95	Crystal Structure Of The Yeast Inter-Membrane Space		4e-04

>pdb|3DXR|A Chain A, Crystal Structure Of The Yeast Inter-Membrane Space Chaperone Assembly Tim9.10 Length = 89

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 58/81 (71%)
Query: 7  AGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMR 66
            +D L  +++     +++  Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+M+
Sbjct: 1  GSMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMK 60
Query: 67 CAEKFLKHSMRVGMRFAELNS 87
          C+EKFLKHS RVG RF E N+
Sbjct: 61 CSEKFLKHSERVGQRFQEQNA 81

>pdb|2BSK|A Chain A, Crystal Structure Of The Tim9 Tim10 Hexameric Complex Length = 89

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 8/77 (10%)
Query: 12 LPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKF 71
          +PE D+ +        Q ++ L  YN L E CF DCV +FT + ++ +E TC   C +K+
Sbjct: 5  IPESDQIK--------QFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKY 56
Query: 72 LKHSMRVGMRFAELNSQ 88
          LK + R+ MRF E + Q
Sbjct: 57 LKMTQRISMRFQEYHIQ 73

>pdb|3DXR|B Chain B, Crystal Structure Of The Yeast Inter-Membrane Space Chaperone Assembly Tim9.10 Length = 95

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 35 MYNSLVERCFNDCVD-NFTRKTLQKQEETCVMRCAEKFLKHSMRVG 79
          M+N LV  C+  C++ +++   L K E +C+ RC  K+ + +++VG
Sbjct: 34 MFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVG 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	93
3dxr_A	89	Mitochondrial import inner membrane translocase su	6e-28
3dxr_B	95	Mitochondrial import inner membrane translocase su	2e-23
2bsk_A	89	Mitochondrial import inner membrane translocase su	7e-23
2bsk_B	90	Mitochondrial import inner membrane translocase su	5e-18
3cjh_B	64	Mitochondrial import inner membrane translocase S	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 89

 Score = 95.8 bits (238), Expect = 6e-28
 Identities = 37/86 (43%), Positives = 58/86 (67%)

Query: 7  AGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMR 66
            +D L  +++     +++  Q++D +R+Y++LVERCF DCV++FT   L  +E+TC+M+
Sbjct: 1  GSMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMK 60

Query: 67 CAEKFLKHSMRVGMRFAELNSQAATQ 92
          C+EKFLKHS RVG RF E N+     
Sbjct: 61 CSEKFLKHSERVGQRFQEQNAALGQG 86

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae} Length = 95

 Score = 85.0 bits (210), Expect = 2e-23
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 2/89 (2%)

Query: 5  MLAGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDN-FTRKTLQKQEETC 63
           L    G P+    +     +  +L     M+N LV  C+  C++  ++   L K E +C
Sbjct: 5  FLGFGGGQPQLSSQQKIQAAE-AELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSC 63

Query: 64 VMRCAEKFLKHSMRVGMRFAELNSQAATQ 92
          + RC  K+ + +++VG    ++       
Sbjct: 64 LDRCVAKYFETNVQVGENMQKMGQSFNAA 92

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 89

 Score = 83.2 bits (205), Expect = 7e-23
 Identities = 27/72 (37%), Positives = 41/72 (56%)

Query: 18 ARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMR 77
          A++       Q ++ L  YN L E CF DCV +FT + ++ +E TC   C +K+LK + R
Sbjct: 3  AQIPESDQIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQR 62

Query: 78 VGMRFAELNSQA 89
          + MRF E + Q 
Sbjct: 63 ISMRFQEYHIQQ 74

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1 Length = 90

 Score = 70.8 bits (173), Expect = 5e-18
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 16 DKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVD-NFTRKTLQKQEETCVMRCAEKFLKH 74
          D  R   +   L++     MYN +   C   CV  ++    L K E  C+ RC  K+L  
Sbjct: 2  DPLRAQQLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDI 61

Query: 75 SMRVGMRFAELNSQAATQ 92
            R+G +  EL+ Q    
Sbjct: 62 HERMGKKLTELSMQDEEL 79

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae} Length = 64

 Score = 39.8 bits (93), Expect = 3e-06
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 14 EQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLK 73
          E  K ++   I            +     CF  CV++     L  QEE C+  C  +FL 
Sbjct: 4  ENSKQKVQMSI------------HQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLD 51

Query: 74 HSMRVGMRFAEL 85
           ++R+       
Sbjct: 52 TNIRIVNGLQNT 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 14/84 (16%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 1   MDKNMLAGLDGLPEQDKARMAAMI----DHLQLRDSLRMYNSLVERCFNDCVDNFTRKTL 56
             ++ LA  D     +  ++  +I    + L+  +  +M++ L    F     +     L
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS--VFPPSA-HIPTILL 392

Query: 57  Q----KQEETCVMRCAEKFLKHSM 76
                   ++ VM    K  K+S+
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSL 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	93
3dxr_A	89	Mitochondrial import inner membrane translocase su	99.98
3cjh_B	64	Mitochondrial import inner membrane translocase S	99.93
3dxr_B	95	Mitochondrial import inner membrane translocase su	99.93
2bsk_B	90	Mitochondrial import inner membrane translocase su	99.93
2bsk_A	89	Mitochondrial import inner membrane translocase su	99.92
3cjh_A	64	Mitochondrial import inner membrane translocase S	99.86

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-32  Score=176.77  Aligned_cols=85  Identities=44%  Similarity=0.903  Sum_probs=67.7

Q ss_pred             cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 047434            7 AGLDGLPEQDKARMAAMIDHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELN   86 (93)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~   86 (93)
                      ++|++|+++++++|++++++.++++|+++||+||+.||+|||++|++++|+++|.+||+|||+|||+++.+|++||++++
T Consensus         1 ~~m~~l~~~~~~el~~~~~e~q~k~~~~l~~~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~   80 (89)
T 3dxr_A            1 GSMDALNSKEQQEFQKVVEQKQMKDFMRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN   80 (89)
T ss_dssp             -------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCchHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             Hhhhh
Q 047434           87 SQAAT   91 (93)
Q Consensus        87 ~~~~~   91 (93)
                      +.++.
T Consensus        81 ~~~~~   85 (89)
T 3dxr_A           81 AALGQ   85 (89)
T ss_dssp             CC---
T ss_pred             HHHhh
Confidence            77654

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.5e-26  Score=138.37  Aligned_cols=61  Identities=21%  Similarity=0.499  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 047434           25 DHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAEL   85 (93)
Q Consensus        25 q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~   85 (93)
                      ++.++..+.++||+||+.||+|||++||+++|+++|++||+|||+||||++++|++||+++
T Consensus         3 ~E~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~   63 (64)
T 3cjh_B            3 GENSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT   63 (64)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556777889999999999999999999999999999999999999999999999999874

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.4e-25  Score=145.47  Aligned_cols=67  Identities=24%  Similarity=0.636  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 047434           24 IDHLQLRDSLRMYNSLVERCFNDCVD-NFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAA   90 (93)
Q Consensus        24 ~q~~q~k~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~~   90 (93)
                      +++.|++.|.++||+||+.||+|||+ +|++++|+++|++||+|||+||||++++|++||+++++..+
T Consensus        23 ~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~~q~~~   90 (95)
T 3dxr_B           23 AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENMQKMGQSFN   90 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999999999999999999 68999999999999999999999999999999999887765

>2bsk_B Mitochondrial import inner membrane translocase subunit TIM10; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.93  E-value=3e-26  Score=146.88  Aligned_cols=69  Identities=29%  Similarity=0.611  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 047434           22 AMIDHLQLRDSLRMYNSLVERCFNDCVD-NFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQAA   90 (93)
Q Consensus        22 ~~~q~~q~k~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~~   90 (93)
                      ...++.+++.|..+||+||+.||+|||+ +|++++|+++|.+||+|||+||||++.+|++||++..+.+.
T Consensus         8 ~~~~e~q~~~~~~l~n~lte~Cf~KCv~~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~~   77 (90)
T 2bsk_B            8 QLAAELEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQDE   77 (90)
T ss_dssp             -----CTTTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCcCcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778889999999999999999995 78999999999999999999999999999999999887653

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=99.92  E-value=9.6e-26  Score=144.49  Aligned_cols=65  Identities=40%  Similarity=0.773  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 047434           25 DHLQLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQA   89 (93)
Q Consensus        25 q~~q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~   89 (93)
                      +..++++|..+||+||+.||+|||++|++++|+++|++||+|||+|||+++.+|++||+++++.+
T Consensus        10 q~~q~~~~~~l~n~lte~Cf~KCv~~~~~~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~~~~~   74 (89)
T 2bsk_A           10 QIKQFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHIQQ   74 (89)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCCCCcCCchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566779999999999999999999999999999999999999999999999999999887543

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.2e-22  Score=123.04  Aligned_cols=56  Identities=16%  Similarity=0.494  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 047434           30 RDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQA   89 (93)
Q Consensus        30 k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~   89 (93)
                      ..+.++||+||+.||+|||+++    |+++|++||+|||+||||++++|++||+++.+..
T Consensus         3 a~~~~l~~~lt~~Cf~kCv~~~----L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~~~   58 (64)
T 3cjh_A            3 ANATELVNKISENCFEKCLTSP----YATRNDACIDQCLAKYMRSWNVISKAYISRIQNA   58 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHCCTT----CCSCCHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHHHHHHHHCCCc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            3466889999999999999873    9999999999999999999999999999876554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	93
d2bska1	73	g.83.1.1 (A:13-85) Mitochondrial import inner memb	2e-22
d2bskb1	65	g.83.1.1 (B:13-77) Mitochondrial import inner memb	4e-16

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.6 bits (199), Expect = 2e-22
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 28 QLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS 87
          Q ++ L  YN L E CF DCV +FT + ++ +E TC   C +K+LK + R+ MRF E + 
Sbjct: 1  QFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI 60

Query: 88 QA 89
          Q 
Sbjct: 61 QQ 62

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (157), Expect = 4e-16
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 27 LQLRDSLRMYNSLVERCFNDCVD-NFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAEL 85
          L++     MYN +   C   CV  ++    L K E  C+ RC  K+L    R+G +  EL
Sbjct: 1  LEVEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTEL 60

Query: 86 NSQ 88
          + Q
Sbjct: 61 SMQ 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	93
d2bska1	73	Mitochondrial import inner membrane translocase su	99.93
d2bskb1	65	Mitochondrial import inner membrane translocase su	99.91

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.2e-27  Score=143.18  Aligned_cols=60  Identities=42%  Similarity=0.842  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 047434           28 QLRDSLRMYNSLVERCFNDCVDNFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNS   87 (93)
Q Consensus        28 q~k~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~   87 (93)
                      |+++|+.+||+||+.||+|||++|++++|+++|.+||+|||+||++++.+|++||++..+
T Consensus         1 Q~kdfl~~yn~lte~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~q~   60 (73)
T d2bska1           1 QFKEFLGTYNKLTETCFLDCVKDFTTREVKPEETTCSEHCLQKYLKMTQRISMRFQEYHI   60 (73)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999999999999999999999999999999999999998653

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4e-25  Score=133.08  Aligned_cols=61  Identities=31%  Similarity=0.649  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhcC-CCCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 047434           29 LRDSLRMYNSLVERCFNDCVD-NFTRKTLQKQEETCVMRCAEKFLKHSMRVGMRFAELNSQA   89 (93)
Q Consensus        29 ~k~~~~~~~~lt~~Cf~kCv~-~~~~~~L~~~E~~Ci~nCv~kfld~~~~v~~~~~~~~~~~   89 (93)
                      ++.+.++||+||+.||+|||+ +|++++|+++|.+||+||++||++++.+|++||+++.+..
T Consensus         3 ~~~~~~m~nklt~~Cf~kCV~~~~~~~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~~~~   64 (65)
T d2bskb1           3 VEMMADMYNRMTSACHRKCVPPHYKEAELSKGESVCLDRCVSKYLDIHERMGKKLTELSMQD   64 (65)
T ss_dssp             TTTTHHHHHHHHHHHHHHHCCTTCCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            445678999999999999997 4789999999999999999999999999999999988754