Citrus Sinensis ID: 047440

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------62
MVAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQDHQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELPSPVEEHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEVLE
cccccHHHHHcccccHHHHHcccHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccc
cccHHHHHHHHccHHHHHHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHccccccccHHHHccccHHHHHHHHHHHHHHHHccEEEEcccHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHc
MVAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDallqqpdisQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKrfgyrftdyyvktranhpysqlQQVFKHVGLGAVVGAISRNLHELqdhqgsylsiydepalplqdpvvDSIKAAVDRLSNSTNFLNFMAQHALIMqeelpspveehidDQKYHFMSLLLNLANTFLYMVNTYIIvptaddysmslGAAATVCGIVIGAMAIAQVFSSVYFsawsnrsyfkplVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCgfgsaravnrryisdcvplkirmqasagfvsasALGMACGPALAGLLQTNFKIYKltfnqntlpGWIMAVAWLFYLVWLCIsfkepsrdieenhtqeesnaepvdnsalekglqqpllitseekpededgdqeydgsdetseeshppansirSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLgltvlpvnIIVGSYISNMFEDRQILLASEIMVCIGILFSFhvfipysvpqyVCSGLVLFVFAEVLE
mvafgkklkerqiQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDallqqpdisqMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQDHQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELPSPVEEHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQeesnaepvdnsaleKGLQQPllitseekpededgDQEYDGsdetseeshppansIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEVLE
MVAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQDHQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELPSPVEEHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEVLE
***********QIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQ*DISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQDHQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELPSPVEEHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISF**********************************************************************AYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEV**
MVAFGKKLKERQIQEWQSYYINYKLMKKKV*******************DFSRMLDNQIEKIVLFLLEQQGLLASRLARLR****************ELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHE************************************************************EHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKE***********************************************************HPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEVLE
MVAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQDHQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELPSPVEEHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSR******************SALEKGLQQPLLITSEE*************************NSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEVLE
*VAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQDHQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELP*PVEEHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPS**********************************************************PPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEVLE
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MVAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQDHQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELPSPVEEHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYSVPQYVCSGLVLFVFAEVLE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query619 2.2.26 [Sep-21-2011]
Q93ZQ5699 SPX domain-containing mem yes no 0.996 0.882 0.818 0.0
Q9T050707 SPX domain-containing mem no no 0.996 0.872 0.780 0.0
Q2V4F9697 SPX domain-containing mem no no 0.995 0.883 0.771 0.0
Q0JAW2696 SPX domain-containing mem yes no 0.996 0.886 0.709 0.0
B8AT51696 SPX domain-containing mem N/A no 0.996 0.886 0.709 0.0
Q658H5698 SPX domain-containing mem no no 0.996 0.883 0.719 0.0
A2Y8U6698 SPX domain-containing mem N/A no 0.996 0.883 0.719 0.0
Q6EPQ3697 SPX domain-containing mem no no 0.996 0.885 0.693 0.0
A2X8A7697 SPX domain-containing mem N/A no 0.996 0.885 0.693 0.0
B8BDK8706 SPX domain-containing mem N/A no 0.996 0.873 0.622 0.0
>sp|Q93ZQ5|SPXM3_ARATH SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2 Back     alignment and function desciption
 Score = 1043 bits (2696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 509/622 (81%), Positives = 561/622 (90%), Gaps = 5/622 (0%)

Query: 1   MVAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIE 60
           MVAFGKKLKER IQEWQ YYINYKLMKKKVKQY++Q+E G  +RRHVLKDFSRMLDNQIE
Sbjct: 1   MVAFGKKLKERSIQEWQGYYINYKLMKKKVKQYSRQLEGGNLERRHVLKDFSRMLDNQIE 60

Query: 61  KIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEIN 120
           KI LF+LEQQGLLASRL  LR  HDAL +QPDIS M+ L+E YRA G DLLKLLFFVE+N
Sbjct: 61  KIALFMLEQQGLLASRLQTLRGSHDALQEQPDISHMSYLKEEYRAVGQDLLKLLFFVEMN 120

Query: 121 AIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQD 180
           AIG+RKILKKFDKRFGYRFT+YYVKTRANHPYS+LQQVF+HVGLGAVVGA+SRNLHELQ+
Sbjct: 121 AIGIRKILKKFDKRFGYRFTNYYVKTRANHPYSELQQVFRHVGLGAVVGAVSRNLHELQN 180

Query: 181 HQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELPSP--VEE 238
           +QGSYLSIYD+P LPLQDPVVDSI+AAVDRL+ STNFL+FMAQHALIMQEELPSP   E 
Sbjct: 181 NQGSYLSIYDQPVLPLQDPVVDSIRAAVDRLTRSTNFLHFMAQHALIMQEELPSPQDEEG 240

Query: 239 HIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVF 298
             +D +YHFMSLLLNL NTFLYMVNTYIIVPTADDYSMSLGAAATVCG+VIGAMA+AQ+F
Sbjct: 241 EEEDGRYHFMSLLLNLVNTFLYMVNTYIIVPTADDYSMSLGAAATVCGVVIGAMAVAQLF 300

Query: 299 SSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNR 358
           SSVYFSAWSNRSYFKPL+FSSIVLFIGN++YALA+DF+SIAVLLIGRLFCG GSARAVNR
Sbjct: 301 SSVYFSAWSNRSYFKPLIFSSIVLFIGNLLYALAFDFNSIAVLLIGRLFCGLGSARAVNR 360

Query: 359 RYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAV 418
           RYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ  FKIYKLTFNQ+TLPGW+MAV
Sbjct: 361 RYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQIRFKIYKLTFNQDTLPGWVMAV 420

Query: 419 AWLFYLVWLCISFKEPSRDIEE-NHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDED 477
           AWL YLVWL ISF+EP+R+ EE   T EESN   V +  LEKG++QPLL+TSEE  E   
Sbjct: 421 AWLIYLVWLAISFREPAREPEEIPKTSEESNHSAVQDVNLEKGMKQPLLLTSEEIEEQG- 479

Query: 478 GDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTY 537
            + E DGS+E SE+S  PANSI +AYRLLTPSVKVQLLIYFMLKY MEILLSESSV+TTY
Sbjct: 480 -EDECDGSEEASEDSRTPANSILAAYRLLTPSVKVQLLIYFMLKYAMEILLSESSVITTY 538

Query: 538 YFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFI 597
           YFGWST +VAIFL CLGLTVLPVN++VGSYISNMFEDRQILL SEIMVC+GIL SFHV +
Sbjct: 539 YFGWSTSSVAIFLFCLGLTVLPVNLVVGSYISNMFEDRQILLVSEIMVCVGILLSFHVVV 598

Query: 598 PYSVPQYVCSGLVLFVFAEVLE 619
           PY+VPQYVCSGL++FV AEVLE
Sbjct: 599 PYTVPQYVCSGLIMFVSAEVLE 620

Arabidopsis thaliana (taxid: 3702)
>sp|Q9T050|SPXM2_ARATH SPX domain-containing membrane protein At4g11810 OS=Arabidopsis thaliana GN=At4g11810 PE=3 SV=1 Back     alignment and function description
>sp|Q2V4F9|SPXM1_ARATH SPX domain-containing membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g63010 PE=1 SV=1 Back     alignment and function description
>sp|Q0JAW2|SPXM2_ORYSJ SPX domain-containing membrane protein Os04g0573000 OS=Oryza sativa subsp. japonica GN=Os04g0573000 PE=2 SV=2 Back     alignment and function description
>sp|B8AT51|SPXM2_ORYSI SPX domain-containing membrane protein OsI_17046 OS=Oryza sativa subsp. indica GN=OsI_17046 PE=3 SV=1 Back     alignment and function description
>sp|Q658H5|SPXM3_ORYSJ SPX domain-containing membrane protein Os06g0129400 OS=Oryza sativa subsp. japonica GN=Os06g0129400 PE=2 SV=1 Back     alignment and function description
>sp|A2Y8U6|SPXM3_ORYSI SPX domain-containing membrane protein OsI_21475 OS=Oryza sativa subsp. indica GN=OsI_21475 PE=3 SV=1 Back     alignment and function description
>sp|Q6EPQ3|SPXM1_ORYSJ SPX domain-containing membrane protein Os02g45520 OS=Oryza sativa subsp. japonica GN=Os02g0678200 PE=2 SV=1 Back     alignment and function description
>sp|A2X8A7|SPXM1_ORYSI SPX domain-containing membrane protein OsI_08463 OS=Oryza sativa subsp. indica GN=OsI_08463 PE=3 SV=2 Back     alignment and function description
>sp|B8BDK8|SPXM4_ORYSI SPX domain-containing membrane protein OsI_32082 OS=Oryza sativa subsp. indica GN=OsI_32082 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query619
225426757698 PREDICTED: SPX domain-containing membran 1.0 0.886 0.857 0.0
147814810709 hypothetical protein VITISV_034681 [Viti 1.0 0.873 0.856 0.0
224074813698 predicted protein [Populus trichocarpa] 0.998 0.885 0.851 0.0
449452380696 PREDICTED: SPX domain-containing membran 0.995 0.885 0.838 0.0
449495868696 PREDICTED: LOW QUALITY PROTEIN: SPX doma 0.995 0.885 0.837 0.0
255537257698 conserved hypothetical protein [Ricinus 1.0 0.886 0.825 0.0
356559722695 PREDICTED: SPX domain-containing membran 0.995 0.886 0.838 0.0
356559726701 PREDICTED: SPX domain-containing membran 0.998 0.881 0.834 0.0
356530808695 PREDICTED: SPX domain-containing membran 0.995 0.886 0.836 0.0
356559724706 PREDICTED: SPX domain-containing membran 0.995 0.872 0.823 0.0
>gi|225426757|ref|XP_002282540.1| PREDICTED: SPX domain-containing membrane protein At4g22990 [Vitis vinifera] gi|297742609|emb|CBI34758.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1118 bits (2892), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/619 (85%), Positives = 577/619 (93%)

Query: 1   MVAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIE 60
           MVAFGKKLKERQIQEWQ YYINYKLMKKKVKQY QQIE GAQ+RRHVLKDFSRMLD QIE
Sbjct: 1   MVAFGKKLKERQIQEWQGYYINYKLMKKKVKQYVQQIEGGAQNRRHVLKDFSRMLDTQIE 60

Query: 61  KIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEIN 120
           KIVLFLLEQQGLLASR+A+L EQHDAL QQPDISQ++ELREAYRA G DLLKLLFFVEIN
Sbjct: 61  KIVLFLLEQQGLLASRIAKLGEQHDALQQQPDISQISELREAYRAVGRDLLKLLFFVEIN 120

Query: 121 AIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQD 180
           AIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVG+GAVVGAISRNL +LQD
Sbjct: 121 AIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGVGAVVGAISRNLGDLQD 180

Query: 181 HQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEELPSPVEEHI 240
            QGSYLSIYD+PALPLQDPV+DSIKAAVDRL++STNFL+F+AQHALIMQEELP+ VEEH+
Sbjct: 181 RQGSYLSIYDQPALPLQDPVIDSIKAAVDRLTHSTNFLHFLAQHALIMQEELPTAVEEHV 240

Query: 241 DDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSS 300
           DDQ+YHFMSLLLNLANTFLYMVNTYI+VPTAD+YSMSLGAAATVCG+VIGAMA+AQVFSS
Sbjct: 241 DDQRYHFMSLLLNLANTFLYMVNTYIVVPTADNYSMSLGAAATVCGVVIGAMAVAQVFSS 300

Query: 301 VYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARAVNRRY 360
           VYFSAWSN+SY++PL+FSSIVLF+GN MYALAYD  SI VLL+GRLFCG GSARAVNRRY
Sbjct: 301 VYFSAWSNKSYYRPLIFSSIVLFVGNTMYALAYDLDSIVVLLLGRLFCGLGSARAVNRRY 360

Query: 361 ISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWIMAVAW 420
           ISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ NFKIYK+TFN++TLPGW+MAVAW
Sbjct: 361 ISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQINFKIYKITFNEDTLPGWVMAVAW 420

Query: 421 LFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQ 480
           L YL+WL ISFKEP R+ +E++ Q+ESNAEPV+N ALEKGL QPLL++SE+K EDEDGDQ
Sbjct: 421 LVYLIWLWISFKEPVRETQESNIQQESNAEPVENDALEKGLAQPLLLSSEDKQEDEDGDQ 480

Query: 481 EYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFG 540
           + D S+E  EES  PA SI SAYRLLTPSVKVQLLIYFMLKY MEILLSESSVVTTYYF 
Sbjct: 481 DNDVSEEAPEESRGPATSIGSAYRLLTPSVKVQLLIYFMLKYAMEILLSESSVVTTYYFN 540

Query: 541 WSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVFIPYS 600
           WST  VAIFLACLGLTVLPVNI VGSYISNMFEDRQILLASEIMV IGIL SF++ IPYS
Sbjct: 541 WSTSTVAIFLACLGLTVLPVNIAVGSYISNMFEDRQILLASEIMVLIGILLSFNIIIPYS 600

Query: 601 VPQYVCSGLVLFVFAEVLE 619
           VPQYVCSGL++FV AEVLE
Sbjct: 601 VPQYVCSGLIMFVSAEVLE 619

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147814810|emb|CAN63492.1| hypothetical protein VITISV_034681 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224074813|ref|XP_002304461.1| predicted protein [Populus trichocarpa] gi|222841893|gb|EEE79440.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452380|ref|XP_004143937.1| PREDICTED: SPX domain-containing membrane protein At4g22990-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449495868|ref|XP_004159968.1| PREDICTED: LOW QUALITY PROTEIN: SPX domain-containing membrane protein At4g22990-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255537257|ref|XP_002509695.1| conserved hypothetical protein [Ricinus communis] gi|223549594|gb|EEF51082.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356559722|ref|XP_003548146.1| PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356559726|ref|XP_003548148.1| PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356530808|ref|XP_003533972.1| PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356559724|ref|XP_003548147.1| PREDICTED: SPX domain-containing membrane protein At4g22990-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query619
TAIR|locus:2137075707 AT4G11810 "AT4G11810" [Arabido 0.996 0.872 0.784 3.5e-265
POMBASE|SPCC757.11c471 SPCC757.11c "membrane transpor 0.347 0.456 0.291 3.2e-21
POMBASE|SPCC330.07c500 SPCC330.07c "membrane transpor 0.344 0.426 0.28 5.9e-19
DICTYBASE|DDB_G0272192498 DDB_G0272192 "Major facilitato 0.382 0.475 0.252 1.9e-18
ZFIN|ZDB-GENE-060818-29504 mfsd8 "major facilitator super 0.323 0.396 0.280 3.6e-13
DICTYBASE|DDB_G0292432 604 DDB_G0292432 [Dictyostelium di 0.392 0.402 0.260 3.6e-13
POMBASE|SPCC613.01497 SPCC613.01 "membrane transport 0.298 0.372 0.290 1.7e-12
POMBASE|SPCC613.02497 SPCC613.02 "membrane transport 0.323 0.402 0.279 7.4e-12
ZFIN|ZDB-GENE-070705-179487 si:ch211-38m6.6 "si:ch211-38m6 0.567 0.720 0.233 1e-10
MGI|MGI:1919425519 Mfsd8 "major facilitator super 0.342 0.408 0.275 7.1e-10
TAIR|locus:2137075 AT4G11810 "AT4G11810" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2551 (903.1 bits), Expect = 3.5e-265, P = 3.5e-265
 Identities = 494/630 (78%), Positives = 563/630 (89%)

Query:     1 MVAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIE 60
             MVAFGKKLKER I+EWQ YYINYKLMKKKVKQY  QIEVG+ DRRHVLKDFSRMLD+QIE
Sbjct:     1 MVAFGKKLKERSIEEWQEYYINYKLMKKKVKQYGPQIEVGSLDRRHVLKDFSRMLDHQIE 60

Query:    61 KIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMTELREAYRAAGMDLLKLLFFVEIN 120
             KI LF+LEQQGLL+SRL +LRE HD L  +PD+SQ+ +LREAYRA G DLLKLLFF+++N
Sbjct:    61 KIALFMLEQQGLLSSRLQKLREWHDTLQDEPDLSQIAKLREAYRAVGQDLLKLLFFIDMN 120

Query:   121 AIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFKHVGLGAVVGAISRNLHELQD 180
             AIG+RKILKKFDKRFGYRFT+YYVKTRA+HPYSQLQQVF+HVGLGAVVGAISRNLHELQ+
Sbjct:   121 AIGIRKILKKFDKRFGYRFTNYYVKTRADHPYSQLQQVFRHVGLGAVVGAISRNLHELQN 180

Query:   181 HQGSYLSIYDEPALPLQDPVVDSIKAAVDRLSNSTNFLNFMAQHALIMQEE---LPSPVE 237
             ++GSYLSIYD+P LPLQDPVVDSIK AVDRL++STNFLNFMAQHALIMQ++   L  P +
Sbjct:   181 NEGSYLSIYDQPVLPLQDPVVDSIKNAVDRLTHSTNFLNFMAQHALIMQDDEDLLMLPPD 240

Query:   238 EHIDDQ--KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIA 295
             E  + +  +YHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCG+VIGAMA+A
Sbjct:   241 EQAEKEEGRYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGVVIGAMAVA 300

Query:   296 QVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFSSIAVLLIGRLFCGFGSARA 355
             Q+FSSVYFSAWSN+SYFKPL+FSSIVLF GN++YALAYDF+S+A+LLIGRLFCGFGSARA
Sbjct:   301 QLFSSVYFSAWSNKSYFKPLIFSSIVLFFGNLLYALAYDFNSLALLLIGRLFCGFGSARA 360

Query:   356 VNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTNFKIYKLTFNQNTLPGWI 415
             VNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQT+FKI  +TFNQ+TLPGW+
Sbjct:   361 VNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTDFKIKNVTFNQDTLPGWV 420

Query:   416 MAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPV------DNSALEKGLQQPLLITS 469
             MAVAWL YLVWL ISF+EP+R+ EE HT +ES +E +       +  +EKGL++PLL+ S
Sbjct:   421 MAVAWLLYLVWLAISFREPAREPEEIHTSQESTSEQIFCGEADQDGNIEKGLKKPLLLAS 480

Query:   470 EEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLS 529
             EE   DE+ D   DGS+E+S++S  PANS  +AY+LLTPSVKVQLLIYFMLKY MEILLS
Sbjct:   481 EETEHDEEDDG--DGSEESSDDSRKPANSFVAAYKLLTPSVKVQLLIYFMLKYAMEILLS 538

Query:   530 ESSVVTTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGI 589
             ESSVVTTYYFGWS  +V+IFL CLGLTVLPVN++VGSYISNMFEDRQILLASEIMVCIGI
Sbjct:   539 ESSVVTTYYFGWSMSSVSIFLFCLGLTVLPVNLVVGSYISNMFEDRQILLASEIMVCIGI 598

Query:   590 LFSFHVFIPYSVPQYVCSGLVLFVFAEVLE 619
             + SFHV IPY+VPQYV SG ++FV AEVLE
Sbjct:   599 VLSFHVVIPYTVPQYVISGFIMFVSAEVLE 628
GO:0003674 "molecular_function" evidence=ND
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
POMBASE|SPCC757.11c SPCC757.11c "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPCC330.07c SPCC330.07c "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272192 DDB_G0272192 "Major facilitator superfamily domain-containing protein 8" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060818-29 mfsd8 "major facilitator superfamily domain containing 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292432 DDB_G0292432 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCC613.01 SPCC613.01 "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPCC613.02 SPCC613.02 "membrane transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070705-179 si:ch211-38m6.6 "si:ch211-38m6.6" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1919425 Mfsd8 "major facilitator superfamily domain containing 8" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2Y8U6SPXM3_ORYSINo assigned EC number0.71980.99670.8839N/Ano
Q9T050SPXM2_ARATHNo assigned EC number0.78090.99670.8727nono
Q0JAW2SPXM2_ORYSJNo assigned EC number0.70920.99670.8864yesno
A2X8A7SPXM1_ORYSINo assigned EC number0.69350.99670.8852N/Ano
Q2V4F9SPXM1_ARATHNo assigned EC number0.77130.99510.8837nono
B8BDK8SPXM4_ORYSINo assigned EC number0.62200.99670.8739N/Ano
Q93ZQ5SPXM3_ARATHNo assigned EC number0.81830.99670.8826yesno
Q658H5SPXM3_ORYSJNo assigned EC number0.71980.99670.8839nono
B8AT51SPXM2_ORYSINo assigned EC number0.70920.99670.8864N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00001081001
SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (698 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query619
pfam03105176 pfam03105, SPX, SPX domain 1e-32
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 4e-14
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 4e-14
COG5036509 COG5036, COG5036, SPX domain-containing protein in 1e-13
TIGR00880141 TIGR00880, 2_A_01_02, Multidrug resistance protein 3e-11
cd06174352 cd06174, MFS, The Major Facilitator Superfamily (M 1e-07
COG2814394 COG2814, AraJ, Arabinose efflux permease [Carbohyd 2e-06
pfam00083449 pfam00083, Sugar_tr, Sugar (and other) transporter 3e-06
COG0477338 COG0477, ProP, Permeases of the major facilitator 7e-05
pfam07690346 pfam07690, MFS_1, Major Facilitator Superfamily 7e-04
TIGR00893399 TIGR00893, 2A0114, D-galactonate transporter 7e-04
TIGR00879481 TIGR00879, SP, MFS transporter, sugar porter (SP) 0.002
>gnl|CDD|217372 pfam03105, SPX, SPX domain Back     alignment and domain information 
 Score =  123 bits (310), Expect = 1e-32
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 29/173 (16%)

Query: 4   FGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIE---------------VGAQDRRHVL 48
           FGK L+   + EW+  YI+YK +KK +K+  +                  +  ++     
Sbjct: 3   FGKSLERNLVPEWRDKYIDYKALKKLIKELTRAKLSLTTNEDGEDESSNLLNEEELEEDE 62

Query: 49  KDFSRMLDNQIEKIVLFLLEQQGLLASRLARLREQHDALLQQPDISQMT----------- 97
            +F   LD ++EK+  F  E++  L  RL  L +Q + L ++ D +              
Sbjct: 63  SEFFEALDKELEKVNSFYKEKEAELLERLEELEKQLEELEERRDETSSAKSSPSDKNLLK 122

Query: 98  ---ELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTR 147
              EL++A      +L  L  ++E+N  G RKILKK+DK  G   +  Y++  
Sbjct: 123 AFEELKKALLELYRELQLLKSYIELNRTGFRKILKKYDKITGSSLSKKYLEKV 175

We have named this region the SPX domain after (SYG1, Pho81 and XPR1). This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N-terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal. This finding suggests that all the members of this family are involved in G-protein associated signal transduction. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family. The SPX domain of S. cerevisiae low-affinity phosphate transporters Pho87 and Pho90 auto-regulates uptake and prevents efflux. This SPX dependent inhibition is mediated by the physical interaction with Spl2 NUC-2 contains several ankyrin repeats pfam00023. Several members of this family are annotated as XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with murine leukaemia viruses (MLV). The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction and may itself function as a phosphate sensor. Length = 176
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|227369 COG5036, COG5036, SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein Back     alignment and domain information
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter Back     alignment and domain information
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily Back     alignment and domain information
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter Back     alignment and domain information
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 619
KOG1161310 consensus Protein involved in vacuolar polyphospha 100.0
PF03105275 SPX: SPX domain; InterPro: IPR004331 The SPX domai 100.0
KOG1162617 consensus Predicted small molecule transporter [In 99.97
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.97
PRK14995 495 methyl viologen resistance protein SmvA; Provision 99.96
PRK03545390 putative arabinose transporter; Provisional 99.96
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 99.96
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 99.96
PRK10213394 nepI ribonucleoside transporter; Reviewed 99.95
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.95
TIGR00711 485 efflux_EmrB drug resistance transporter, EmrB/QacA 99.95
COG5036509 SPX domain-containing protein involved in vacuolar 99.95
TIGR01299 742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.95
PRK11663434 regulatory protein UhpC; Provisional 99.95
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 99.95
PRK10091382 MFS transport protein AraJ; Provisional 99.94
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.94
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 99.94
PRK10642 490 proline/glycine betaine transporter; Provisional 99.94
PRK10406432 alpha-ketoglutarate transporter; Provisional 99.94
PRK15402406 multidrug efflux system translocase MdfA; Provisio 99.94
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 99.94
PRK10473392 multidrug efflux system protein MdtL; Provisional 99.94
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 99.94
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 99.94
PRK15403413 multidrug efflux system protein MdtM; Provisional 99.94
PRK03699394 putative transporter; Provisional 99.94
TIGR00891405 2A0112 putative sialic acid transporter. 99.94
PLN00028 476 nitrate transmembrane transporter; Provisional 99.94
TIGR00900365 2A0121 H+ Antiporter protein. 99.93
PRK12307426 putative sialic acid transporter; Provisional 99.93
TIGR00893399 2A0114 d-galactonate transporter. 99.93
PRK09705393 cynX putative cyanate transporter; Provisional 99.93
PRK10504471 putative transporter; Provisional 99.93
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 99.93
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.93
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 99.93
KOG1330 493 consensus Sugar transporter/spinster transmembrane 99.93
PRK10133438 L-fucose transporter; Provisional 99.93
PRK11652394 emrD multidrug resistance protein D; Provisional 99.93
TIGR00895398 2A0115 benzoate transport. 99.92
TIGR00881379 2A0104 phosphoglycerate transporter family protein 99.92
PRK09952438 shikimate transporter; Provisional 99.92
PRK11043401 putative transporter; Provisional 99.92
PRK15075434 citrate-proton symporter; Provisional 99.92
PRK15034 462 nitrate/nitrite transport protein NarU; Provisiona 99.92
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.92
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.92
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.92
PRK11195393 lysophospholipid transporter LplT; Provisional 99.91
PRK05122399 major facilitator superfamily transporter; Provisi 99.91
TIGR00897402 2A0118 polyol permease family. This family of prot 99.91
PRK03633381 putative MFS family transporter protein; Provision 99.91
KOG2532466 consensus Permease of the major facilitator superf 99.91
PRK09874408 drug efflux system protein MdtG; Provisional 99.91
TIGR00805 633 oat sodium-independent organic anion transporter. 99.91
TIGR00892 455 2A0113 monocarboxylate transporter 1. 99.91
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 99.91
PRK03893 496 putative sialic acid transporter; Provisional 99.91
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.91
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.91
PRK11646400 multidrug resistance protein MdtH; Provisional 99.91
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 99.9
PRK10054395 putative transporter; Provisional 99.9
TIGR00896355 CynX cyanate transporter. This family of proteins 99.9
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.9
PRK12382392 putative transporter; Provisional 99.9
PRK10489417 enterobactin exporter EntS; Provisional 99.89
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.89
KOG2533 495 consensus Permease of the major facilitator superf 99.89
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.89
TIGR00901356 2A0125 AmpG-related permease. 99.88
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 99.88
PRK15011393 sugar efflux transporter B; Provisional 99.88
COG5408296 SPX domain-containing protein [Signal transduction 99.88
TIGR00898505 2A0119 cation transport protein. 99.88
PRK11010 491 ampG muropeptide transporter; Validated 99.88
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.87
KOG2615451 consensus Permease of the major facilitator superf 99.87
KOG3764464 consensus Vesicular amine transporter [Intracellul 99.87
KOG0569 485 consensus Permease of the major facilitator superf 99.87
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 99.87
PF05977 524 MFS_3: Transmembrane secretion effector; InterPro: 99.86
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 99.86
PRK11902402 ampG muropeptide transporter; Reviewed 99.86
PRK09528420 lacY galactoside permease; Reviewed 99.85
KOG0254 513 consensus Predicted transporter (major facilitator 99.85
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 99.84
KOG2325 488 consensus Predicted transporter/transmembrane prot 99.83
COG0738422 FucP Fucose permease [Carbohydrate transport and m 99.83
TIGR00792 437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 99.82
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.81
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 99.81
PRK10207 489 dipeptide/tripeptide permease B; Provisional 99.8
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 99.8
KOG2504 509 consensus Monocarboxylate transporter [Carbohydrat 99.8
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.79
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 99.79
COG2807395 CynX Cyanate permease [Inorganic ion transport and 99.79
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 99.78
PF06609 599 TRI12: Fungal trichothecene efflux pump (TRI12); I 99.77
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 99.77
KOG0252 538 consensus Inorganic phosphate transporter [Inorgan 99.75
PRK09584 500 tppB putative tripeptide transporter permease; Rev 99.73
PTZ00207 591 hypothetical protein; Provisional 99.72
PRK10429 473 melibiose:sodium symporter; Provisional 99.71
PF13347428 MFS_2: MFS/sugar transport protein 99.71
PRK09669 444 putative symporter YagG; Provisional 99.7
COG2211 467 MelB Na+/melibiose symporter and related transport 99.69
PRK09848 448 glucuronide transporter; Provisional 99.68
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 99.66
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 99.63
PRK11462 460 putative transporter; Provisional 99.63
PRK15462 493 dipeptide/tripeptide permease D; Provisional 99.63
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 99.63
TIGR00788 468 fbt folate/biopterin transporter. The only functio 99.6
KOG2816 463 consensus Predicted transporter ADD1 (major facili 99.59
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 99.58
KOG3626 735 consensus Organic anion transporter [Secondary met 99.55
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.53
TIGR01272310 gluP glucose/galactose transporter. Disruption of 99.5
PF05631354 DUF791: Protein of unknown function (DUF791); Inte 99.5
KOG2563 480 consensus Permease of the major facilitator superf 99.49
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 99.49
TIGR00880141 2_A_01_02 Multidrug resistance protein. 99.46
TIGR00889418 2A0110 nucleoside transporter. This family of prot 99.46
TIGR01299742 synapt_SV2 synaptic vesicle protein SV2. This mode 99.44
COG2270438 Permeases of the major facilitator superfamily [Ge 99.43
PRK10642490 proline/glycine betaine transporter; Provisional 99.4
COG3104 498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 99.35
PRK05122399 major facilitator superfamily transporter; Provisi 99.33
PRK11551406 putative 3-hydroxyphenylpropionic transporter MhpT 99.33
TIGR00902382 2A0127 phenyl proprionate permease family protein. 99.31
cd06174352 MFS The Major Facilitator Superfamily (MFS) is a l 99.31
TIGR00890377 2A0111 Oxalate/Formate Antiporter. 99.31
PRK15011393 sugar efflux transporter B; Provisional 99.31
PRK09528420 lacY galactoside permease; Reviewed 99.3
PRK09874408 drug efflux system protein MdtG; Provisional 99.29
PRK12382392 putative transporter; Provisional 99.29
PRK10489417 enterobactin exporter EntS; Provisional 99.29
PRK09705393 cynX putative cyanate transporter; Provisional 99.27
TIGR00892455 2A0113 monocarboxylate transporter 1. 99.27
TIGR00879481 SP MFS transporter, sugar porter (SP) family. This 99.25
PRK03545390 putative arabinose transporter; Provisional 99.25
PRK03633381 putative MFS family transporter protein; Provision 99.22
TIGR00897402 2A0118 polyol permease family. This family of prot 99.21
PRK09556467 uhpT sugar phosphate antiporter; Reviewed 99.21
PRK03893496 putative sialic acid transporter; Provisional 99.21
TIGR00893399 2A0114 d-galactonate transporter. 99.2
TIGR00899375 2A0120 sugar efflux transporter. This family of pr 99.19
PRK03699394 putative transporter; Provisional 99.19
TIGR00883394 2A0106 metabolite-proton symporter. This model rep 99.16
PRK11663434 regulatory protein UhpC; Provisional 99.15
PRK11128382 putative 3-phenylpropionic acid transporter; Provi 99.13
PF11700477 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 99.13
PRK12307426 putative sialic acid transporter; Provisional 99.13
PRK09952438 shikimate transporter; Provisional 99.12
PRK10077479 xylE D-xylose transporter XylE; Provisional 99.11
KOG0569485 consensus Permease of the major facilitator superf 99.11
TIGR00891405 2A0112 putative sialic acid transporter. 99.11
PF05977524 MFS_3: Transmembrane secretion effector; InterPro: 99.11
TIGR00895398 2A0115 benzoate transport. 99.09
PF01770412 Folate_carrier: Reduced folate carrier; InterPro: 99.09
TIGR00900365 2A0121 H+ Antiporter protein. 99.09
PRK11273452 glpT sn-glycerol-3-phosphate transporter; Provisio 99.09
COG2814394 AraJ Arabinose efflux permease [Carbohydrate trans 99.08
PRK15075434 citrate-proton symporter; Provisional 99.05
COG2271448 UhpC Sugar phosphate permease [Carbohydrate transp 99.05
TIGR00887502 2A0109 phosphate:H+ symporter. This model represen 99.03
PRK10504471 putative transporter; Provisional 99.01
TIGR02718390 sider_RhtX_FptX siderophore transporter, RhtX/FptX 99.01
TIGR00896355 CynX cyanate transporter. This family of proteins 98.98
TIGR02332412 HpaX 4-hydroxyphenylacetate permease. This protein 98.97
TIGR00882396 2A0105 oligosaccharide:H+ symporter. 98.97
TIGR00712438 glpT glycerol-3-phosphate transporter. This model 98.97
KOG0637498 consensus Sucrose transporter and related proteins 98.97
PRK10213394 nepI ribonucleoside transporter; Reviewed 98.96
PRK11646400 multidrug resistance protein MdtH; Provisional 98.96
PRK08633 1146 2-acyl-glycerophospho-ethanolamine acyltransferase 98.95
PRK10054395 putative transporter; Provisional 98.95
COG2270438 Permeases of the major facilitator superfamily [Ge 98.95
KOG4686459 consensus Predicted sugar transporter [Carbohydrat 98.94
PRK10091382 MFS transport protein AraJ; Provisional 98.92
PRK10406432 alpha-ketoglutarate transporter; Provisional 98.9
TIGR00792437 gph sugar (Glycoside-Pentoside-Hexuronide) transpo 98.9
PRK15402406 multidrug efflux system translocase MdfA; Provisio 98.9
PRK14995495 methyl viologen resistance protein SmvA; Provision 98.89
KOG2504509 consensus Monocarboxylate transporter [Carbohydrat 98.89
TIGR00898505 2A0119 cation transport protein. 98.88
PF03825400 Nuc_H_symport: Nucleoside H+ symporter 98.87
TIGR00711485 efflux_EmrB drug resistance transporter, EmrB/QacA 98.87
PRK11010491 ampG muropeptide transporter; Validated 98.87
PF03092 433 BT1: BT1 family; InterPro: IPR004324 Members of th 98.86
PRK06814 1140 acylglycerophosphoethanolamine acyltransferase; Pr 98.85
PRK15034462 nitrate/nitrite transport protein NarU; Provisiona 98.84
TIGR01272310 gluP glucose/galactose transporter. Disruption of 98.83
PF06813250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 98.8
PLN00028476 nitrate transmembrane transporter; Provisional 98.78
PRK11195393 lysophospholipid transporter LplT; Provisional 98.77
TIGR00881379 2A0104 phosphoglycerate transporter family protein 98.75
TIGR00903368 2A0129 major facilitator 4 family protein. This fa 98.75
COG2223417 NarK Nitrate/nitrite transporter [Inorganic ion tr 98.73
TIGR00901356 2A0125 AmpG-related permease. 98.72
TIGR00894465 2A0114euk Na(+)-dependent inorganic phosphate cotr 98.71
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 98.71
COG0477338 ProP Permeases of the major facilitator superfamil 98.69
TIGR00710385 efflux_Bcr_CflA drug resistance transporter, Bcr/C 98.68
PRK09848448 glucuronide transporter; Provisional 98.68
COG2807395 CynX Cyanate permease [Inorganic ion transport and 98.67
PF13347428 MFS_2: MFS/sugar transport protein 98.67
PF07690352 MFS_1: Major Facilitator Superfamily; InterPro: IP 98.67
PRK11102377 bicyclomycin/multidrug efflux system; Provisional 98.64
PF01306412 LacY_symp: LacY proton/sugar symporter; InterPro: 98.63
PRK11902402 ampG muropeptide transporter; Reviewed 98.63
PRK10473392 multidrug efflux system protein MdtL; Provisional 98.62
TIGR00769472 AAA ADP/ATP carrier protein family. These proteins 98.61
PRK10429473 melibiose:sodium symporter; Provisional 98.6
PRK10133438 L-fucose transporter; Provisional 98.57
PRK09669444 putative symporter YagG; Provisional 98.57
PRK11043401 putative transporter; Provisional 98.54
TIGR00924475 yjdL_sub1_fam amino acid/peptide transporter (Pept 98.53
KOG3764464 consensus Vesicular amine transporter [Intracellul 98.52
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 98.48
PRK11652394 emrD multidrug resistance protein D; Provisional 98.48
KOG3762618 consensus Predicted transporter [General function 98.47
KOG0253528 consensus Synaptic vesicle transporter SV2 (major 98.47
PF03209403 PUCC: PUCC protein; InterPro: IPR004896 This prote 98.45
KOG3098461 consensus Uncharacterized conserved protein [Funct 98.42
TIGR00788468 fbt folate/biopterin transporter. The only functio 98.35
TIGR00885410 fucP L-fucose:H+ symporter permease. This family d 98.33
TIGR00886366 2A0108 nitrite extrusion protein (nitrite facilita 98.27
PRK11462460 putative transporter; Provisional 98.26
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 98.25
KOG2532466 consensus Permease of the major facilitator superf 98.24
PF1283277 MFS_1_like: MFS_1 like family 98.23
KOG4332454 consensus Predicted sugar transporter [Carbohydrat 98.18
PRK09584500 tppB putative tripeptide transporter permease; Rev 98.17
KOG0254513 consensus Predicted transporter (major facilitator 98.17
KOG0252538 consensus Inorganic phosphate transporter [Inorgan 98.17
TIGR01301477 GPH_sucrose GPH family sucrose/H+ symporter. This 98.16
COG2211467 MelB Na+/melibiose symporter and related transport 98.12
PRK15403413 multidrug efflux system protein MdtM; Provisional 98.09
KOG3574 510 consensus Acetyl-CoA transporter [Inorganic ion tr 98.09
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 98.07
PRK10207489 dipeptide/tripeptide permease B; Provisional 98.07
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 98.07
COG0738422 FucP Fucose permease [Carbohydrate transport and m 98.01
PF00083451 Sugar_tr: Sugar (and other) transporter; InterPro: 97.97
PF13000 544 Acatn: Acetyl-coenzyme A transporter 1; InterPro: 97.78
PF03219491 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 97.76
PF1283277 MFS_1_like: MFS_1 like family 97.75
KOG2533495 consensus Permease of the major facilitator superf 97.68
PRK15462 493 dipeptide/tripeptide permease D; Provisional 97.63
KOG2615451 consensus Permease of the major facilitator superf 97.61
KOG0255521 consensus Synaptic vesicle transporter SVOP and re 97.58
KOG2816463 consensus Predicted transporter ADD1 (major facili 97.4
KOG3810433 consensus Micronutrient transporters (folate trans 97.4
PF06609599 TRI12: Fungal trichothecene efflux pump (TRI12); I 97.39
PTZ00207591 hypothetical protein; Provisional 97.34
COG3202509 ATP/ADP translocase [Energy production and convers 97.26
PRK03612 521 spermidine synthase; Provisional 97.23
PF00854372 PTR2: POT family; InterPro: IPR000109 This entry r 97.01
KOG3097390 consensus Predicted membrane protein [Function unk 96.87
KOG2563480 consensus Permease of the major facilitator superf 96.84
KOG3762 618 consensus Predicted transporter [General function 96.73
KOG1237 571 consensus H+/oligopeptide symporter [Amino acid tr 96.58
COG3104498 PTR2 Dipeptide/tripeptide permease [Amino acid tra 96.54
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 96.27
TIGR00806 511 rfc RFC reduced folate carrier. Proteins of the RF 96.18
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 96.14
PF05631 354 DUF791: Protein of unknown function (DUF791); Inte 96.11
PF0677985 DUF1228: Protein of unknown function (DUF1228); In 96.03
PF02487402 CLN3: CLN3 protein; InterPro: IPR003492 Batten's d 96.0
KOG3098461 consensus Uncharacterized conserved protein [Funct 95.77
PF06963432 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi 95.74
PF03092433 BT1: BT1 family; InterPro: IPR004324 Members of th 95.47
KOG4830412 consensus Predicted sugar transporter [Carbohydrat 95.4
TIGR00805 633 oat sodium-independent organic anion transporter. 95.23
KOG1330 493 consensus Sugar transporter/spinster transmembrane 93.7
KOG4460741 consensus Nuclear pore complex, Nup88/rNup84 compo 93.3
TIGR00880141 2_A_01_02 Multidrug resistance protein. 93.07
KOG2325 488 consensus Predicted transporter/transmembrane prot 92.86
PF06813 250 Nodulin-like: Nodulin-like; InterPro: IPR010658 Th 92.73
TIGR00939437 2a57 Equilibrative Nucleoside Transporter (ENT). 92.41
PF09602165 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion prot 91.76
COG4262 508 Predicted spermidine synthase with an N-terminal m 90.23
TIGR00926 654 2A1704 Peptide:H+ symporter (also transports b-lac 89.69
KOG1479406 consensus Nucleoside transporter [Nucleotide trans 88.97
PF07672267 MFS_Mycoplasma: Mycoplasma MFS transporter; InterP 88.37
KOG0637498 consensus Sucrose transporter and related proteins 86.83
KOG3880409 consensus Predicted small molecule transporter inv 85.77
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 85.24
PF03137 539 OATP: Organic Anion Transporter Polypeptide (OATP) 82.11
PF10146230 zf-C4H2: Zinc finger-containing protein ; InterPro 80.54
PF05978156 UNC-93: Ion channel regulatory protein UNC-93; Int 80.3
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-36  Score=279.02  Aligned_cols=176  Identities=38%  Similarity=0.523  Sum_probs=150.4

Q ss_pred             CcchhHHhhhcchhhHHhccCchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047440            2 VAFGKKLKERQIQEWQSYYINYKLMKKKVKQYAQQIEVGAQDRRHVLKDFSRMLDNQIEKIVLFLLEQQGLLASRLARLR   81 (619)
Q Consensus         2 MkFg~~l~~~~~~ew~~~yi~Y~~lKk~i~~~~~~~~~~~~~~~~~~~~F~~~l~~e~~kv~~f~~~~~~~~~~~~~~~~   81 (619)
                      |||||+|++...|||+++|||||.|||+||+..........+. ..+..|.++||+||+||+.||.+++.++.+|++.|+
T Consensus         1 MkFGk~L~~~~l~ew~~~yinYk~LKK~lK~~~~~~~~~~~~~-~~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~   79 (310)
T KOG1161|consen    1 MKFGKYLKEELLPEWKDKYINYKELKKLLKQYSIQTADSSPDS-RDESDFVRLLDAELEKVNGFQLEKESELIIRLKELE   79 (310)
T ss_pred             CchhHHHHHhhhhhHhhhhcCHHHHHHHHHHhccccccCCccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999743222211111 146899999999999999999999999999999999


Q ss_pred             HHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhcCCccchHHHHhhcCCCCccchhchh
Q 047440           82 EQHDALLQ-QPDISQMTELREAYRAAGMDLLKLLFFVEINAIGLRKILKKFDKRFGYRFTDYYVKTRANHPYSQLQQVFK  160 (619)
Q Consensus        82 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~~~~KIlKK~dK~~~~~~~~~~~~~~~~~~~~~~~~~f~  160 (619)
                      .++++-.. +++.+....+++++.++..|+.+|.+|++||+|||+||||||||++|...++.|..++..+||..      
T Consensus        80 e~~~~~~~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~KILKK~DKrtg~~l~~~f~~~l~~~Pf~~------  153 (310)
T KOG1161|consen   80 EKIDALSLEPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFAKILKKHDKRTGYRLRPYFQVRLLHQPFFT------  153 (310)
T ss_pred             HHhhccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccccccccHHHHHHHhCCCch------
Confidence            99987222 24566788999999999999999999999999999999999999999999999999888889855      


Q ss_pred             hccHHHHHHHHHHHHHHHhhccCC
Q 047440          161 HVGLGAVVGAISRNLHELQDHQGS  184 (619)
Q Consensus       161 ~~~~~~l~~~i~~~~~~l~~~~~~  184 (619)
                      .+.+.++..+|+..+.-+++....
T Consensus       154 ~e~~~~Lv~e~~~l~~~l~~~~~~  177 (310)
T KOG1161|consen  154 TEQLFRLVYEISILLDLLRPSNRN  177 (310)
T ss_pred             hhhHHHHHHHHHHHHHHhcccccc
Confidence            667788999999777777664433

>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins Back     alignment and domain information
>KOG1162 consensus Predicted small molecule transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>COG5036 SPX domain-containing protein involved in vacuolar polyphosphate accumulation [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>COG5408 SPX domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>TIGR00889 2A0110 nucleoside transporter Back     alignment and domain information
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2 Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>PRK10642 proline/glycine betaine transporter; Provisional Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>PRK05122 major facilitator superfamily transporter; Provisional Back     alignment and domain information
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional Back     alignment and domain information
>TIGR00902 2A0127 phenyl proprionate permease family protein Back     alignment and domain information
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters Back     alignment and domain information
>TIGR00890 2A0111 Oxalate/Formate Antiporter Back     alignment and domain information
>PRK15011 sugar efflux transporter B; Provisional Back     alignment and domain information
>PRK09528 lacY galactoside permease; Reviewed Back     alignment and domain information
>PRK09874 drug efflux system protein MdtG; Provisional Back     alignment and domain information
>PRK12382 putative transporter; Provisional Back     alignment and domain information
>PRK10489 enterobactin exporter EntS; Provisional Back     alignment and domain information
>PRK09705 cynX putative cyanate transporter; Provisional Back     alignment and domain information
>TIGR00892 2A0113 monocarboxylate transporter 1 Back     alignment and domain information
>TIGR00879 SP MFS transporter, sugar porter (SP) family Back     alignment and domain information
>PRK03545 putative arabinose transporter; Provisional Back     alignment and domain information
>PRK03633 putative MFS family transporter protein; Provisional Back     alignment and domain information
>TIGR00897 2A0118 polyol permease family Back     alignment and domain information
>PRK09556 uhpT sugar phosphate antiporter; Reviewed Back     alignment and domain information
>PRK03893 putative sialic acid transporter; Provisional Back     alignment and domain information
>TIGR00893 2A0114 d-galactonate transporter Back     alignment and domain information
>TIGR00899 2A0120 sugar efflux transporter Back     alignment and domain information
>PRK03699 putative transporter; Provisional Back     alignment and domain information
>TIGR00883 2A0106 metabolite-proton symporter Back     alignment and domain information
>PRK11663 regulatory protein UhpC; Provisional Back     alignment and domain information
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional Back     alignment and domain information
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions Back     alignment and domain information
>PRK12307 putative sialic acid transporter; Provisional Back     alignment and domain information
>PRK09952 shikimate transporter; Provisional Back     alignment and domain information
>PRK10077 xylE D-xylose transporter XylE; Provisional Back     alignment and domain information
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00891 2A0112 putative sialic acid transporter Back     alignment and domain information
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily Back     alignment and domain information
>TIGR00895 2A0115 benzoate transport Back     alignment and domain information
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) Back     alignment and domain information
>TIGR00900 2A0121 H+ Antiporter protein Back     alignment and domain information
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional Back     alignment and domain information
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15075 citrate-proton symporter; Provisional Back     alignment and domain information
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00887 2A0109 phosphate:H+ symporter Back     alignment and domain information
>PRK10504 putative transporter; Provisional Back     alignment and domain information
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family Back     alignment and domain information
>TIGR00896 CynX cyanate transporter Back     alignment and domain information
>TIGR02332 HpaX 4-hydroxyphenylacetate permease Back     alignment and domain information
>TIGR00882 2A0105 oligosaccharide:H+ symporter Back     alignment and domain information
>TIGR00712 glpT glycerol-3-phosphate transporter Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10213 nepI ribonucleoside transporter; Reviewed Back     alignment and domain information
>PRK11646 multidrug resistance protein MdtH; Provisional Back     alignment and domain information
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated Back     alignment and domain information
>PRK10054 putative transporter; Provisional Back     alignment and domain information
>COG2270 Permeases of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10091 MFS transport protein AraJ; Provisional Back     alignment and domain information
>PRK10406 alpha-ketoglutarate transporter; Provisional Back     alignment and domain information
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter Back     alignment and domain information
>PRK15402 multidrug efflux system translocase MdfA; Provisional Back     alignment and domain information
>PRK14995 methyl viologen resistance protein SmvA; Provisional Back     alignment and domain information
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00898 2A0119 cation transport protein Back     alignment and domain information
>PF03825 Nuc_H_symport: Nucleoside H+ symporter Back     alignment and domain information
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily Back     alignment and domain information
>PRK11010 ampG muropeptide transporter; Validated Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional Back     alignment and domain information
>PRK15034 nitrate/nitrite transport protein NarU; Provisional Back     alignment and domain information
>TIGR01272 gluP glucose/galactose transporter Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>PLN00028 nitrate transmembrane transporter; Provisional Back     alignment and domain information
>PRK11195 lysophospholipid transporter LplT; Provisional Back     alignment and domain information
>TIGR00881 2A0104 phosphoglycerate transporter family protein Back     alignment and domain information
>TIGR00903 2A0129 major facilitator 4 family protein Back     alignment and domain information
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00901 2A0125 AmpG-related permease Back     alignment and domain information
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily Back     alignment and domain information
>PRK09848 glucuronide transporter; Provisional Back     alignment and domain information
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF13347 MFS_2: MFS/sugar transport protein Back     alignment and domain information
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms Back     alignment and domain information
>PRK11102 bicyclomycin/multidrug efflux system; Provisional Back     alignment and domain information
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] Back     alignment and domain information
>PRK11902 ampG muropeptide transporter; Reviewed Back     alignment and domain information
>PRK10473 multidrug efflux system protein MdtL; Provisional Back     alignment and domain information
>TIGR00769 AAA ADP/ATP carrier protein family Back     alignment and domain information
>PRK10429 melibiose:sodium symporter; Provisional Back     alignment and domain information
>PRK10133 L-fucose transporter; Provisional Back     alignment and domain information
>PRK09669 putative symporter YagG; Provisional Back     alignment and domain information
>PRK11043 putative transporter; Provisional Back     alignment and domain information
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial Back     alignment and domain information
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>PRK11652 emrD multidrug resistance protein D; Provisional Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00788 fbt folate/biopterin transporter Back     alignment and domain information
>TIGR00885 fucP L-fucose:H+ symporter permease Back     alignment and domain information
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) Back     alignment and domain information
>PRK11462 putative transporter; Provisional Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09584 tppB putative tripeptide transporter permease; Reviewed Back     alignment and domain information
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter Back     alignment and domain information
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15403 multidrug efflux system protein MdtM; Provisional Back     alignment and domain information
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>PRK10207 dipeptide/tripeptide permease B; Provisional Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters Back     alignment and domain information
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] Back     alignment and domain information
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions Back     alignment and domain information
>PF12832 MFS_1_like: MFS_1 like family Back     alignment and domain information
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK15462 dipeptide/tripeptide permease D; Provisional Back     alignment and domain information
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] Back     alignment and domain information
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] Back     alignment and domain information
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins Back     alignment and domain information
>PTZ00207 hypothetical protein; Provisional Back     alignment and domain information
>COG3202 ATP/ADP translocase [Energy production and conversion] Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters Back     alignment and domain information
>KOG3097 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] Back     alignment and domain information
>KOG3762 consensus Predicted transporter [General function prediction only] Back     alignment and domain information
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>TIGR00806 rfc RFC reduced folate carrier Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters Back     alignment and domain information
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age Back     alignment and domain information
>KOG3098 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 Back     alignment and domain information
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins Back     alignment and domain information
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00805 oat sodium-independent organic anion transporter Back     alignment and domain information
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00880 2_A_01_02 Multidrug resistance protein Back     alignment and domain information
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] Back     alignment and domain information
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins Back     alignment and domain information
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) Back     alignment and domain information
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium Back     alignment and domain information
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] Back     alignment and domain information
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) Back     alignment and domain information
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] Back     alignment and domain information
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) Back     alignment and domain information
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) Back     alignment and domain information
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query619
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 5e-05
2cfq_A417 Lactose permease; transport, transport mechanism, 8e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 5e-05
 Identities = 61/427 (14%), Positives = 119/427 (27%), Gaps = 105/427 (24%)

Query: 239 HID----DQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAI 294
           H+D    + +Y +  +L    + F+   +   +     D   S+ +   +  I++   A+
Sbjct: 6   HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAV 61

Query: 295 AQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDF--SSIAVLLIGR--LFCGF 350
           +          W+  S  + +V      F+  V+  + Y F  S I         +   +
Sbjct: 62  SGT----LRLFWTLLSKQEEMVQK----FVEEVL-RINYKFLMSPIKTEQRQPSMMTRMY 112

Query: 351 GSARA----VNRRYISDCVP-----LKIR---MQA-SAGFVSASAL-GMA-CG-PALAG- 393
              R      N+ +    V      LK+R   ++   A  V    + G+   G   +A  
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV---LIDGVLGSGKTWVALD 169

Query: 394 -------LLQTNFKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEE 446
                    + +FKI+ L       P  ++ +                            
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 447 SNAEPVDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLL 506
             AE +      K  +  LL+                            A ++    ++L
Sbjct: 230 IQAE-LRRLLKSKPYENCLLVL-----------------LNVQNAKAWNAFNLSC--KIL 269

Query: 507 TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTV--LP----- 559
             +   Q+  +        I L   S+  T          ++ L  L      LP     
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLT-----PDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 560 VNIIVGSYISNMFED--------RQIL---LASEIMVCIGIL---------FSFHVF--- 596
            N    S I+    D        + +    L + I   + +L             VF   
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 597 --IPYSV 601
             IP  +
Sbjct: 385 AHIPTIL 391
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query619
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 99.96
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.96
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 99.94
4gc0_A 491 D-xylose-proton symporter; MFS, transport protein; 99.93
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.9
2cfq_A417 Lactose permease; transport, transport mechanism, 99.84
2xut_A 524 Proton/peptide symporter family protein; transport 99.79
1pw4_A451 Glycerol-3-phosphate transporter; transmembrane, i 99.31
2cfq_A417 Lactose permease; transport, transport mechanism, 99.2
3o7q_A438 L-fucose-proton symporter; transporter, multi-PASS 99.19
4gc0_A491 D-xylose-proton symporter; MFS, transport protein; 99.15
4aps_A491 DI-OR tripeptide H+ symporter; transport protein, 99.07
2gfp_A375 EMRD, multidrug resistance protein D; membrane pro 98.74
2xut_A524 Proton/peptide symporter family protein; transport 98.48
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
Probab=99.96  E-value=2.8e-28  Score=257.18  Aligned_cols=292  Identities=12%  Similarity=0.124  Sum_probs=234.3

Q ss_pred             chhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHHH
Q 047440          244 KYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVLF  323 (619)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~~  323 (619)
                      +.+++.+.++.+..++..++.....+.+|.+.+++|.+..+.|++.+++.++..++++++|+++||+|||++++.+.++.
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~  101 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHH
Confidence            34556666677777788888889999999999999999999999999999999999999999999999999998888765


Q ss_pred             -HHHHHH---HHhhccCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhh-
Q 047440          324 -IGNVMY---ALAYDFSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQ-  396 (619)
Q Consensus       324 -i~~~l~---~~~~~~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~-  396 (619)
                       ++.+++   .++   ++++.++++|++.|++.+.  +...++++|++|+++|++++++.+.+.++|.++||++++++. 
T Consensus       102 ~~~~~~~~~~~~~---~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  178 (438)
T 3o7q_A          102 ALGAALFWPAAEI---MNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL  178 (438)
T ss_dssp             HHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhcccc---ccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             788877   666   9999999999999999888  889999999999999999999999999999999999999997 


Q ss_pred             ccccccc------------------------eeccccchhHHHHHHHHHHHHHHHhhh-ccCCchhhhhhccccccCCCC
Q 047440          397 TNFKIYK------------------------LTFNQNTLPGWIMAVAWLFYLVWLCIS-FKEPSRDIEENHTQEESNAEP  451 (619)
Q Consensus       397 ~~~~~~~------------------------w~w~~~~~~~~~~~~~~~~~~~~~~~~-~pe~~~~~~~~~~~~~~~~~~  451 (619)
                      ...+  .                        |+|     +|++.+++.++..++.++. .||+++..+.           
T Consensus       179 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~~-----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-----------  240 (438)
T 3o7q_A          179 SNVP--HQSQDVLDKMSPEQLSAYKHSLVLSVQT-----PYMIIVAIVLLVALLIMLTKFPALQSDNHS-----------  240 (438)
T ss_dssp             TSSC--CCCHHHHHHSCHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCCCTTTCCC-----------
T ss_pred             cccc--cccccccccCCcchhhhhhhhhhhhHHH-----HHHHHHHHHHHHHHHHHHHcCCcccccccc-----------
Confidence            4432  2                        666     7776666655544443332 2333221000           


Q ss_pred             CcchhhhhcCCCCcccCCCCCCCCcCCCCCCCCCCCCCCCCCCCCcchHHHHHhcCcchHHHHHHHHHHHHHHHHHhhch
Q 047440          452 VDNSALEKGLQQPLLITSEEKPEDEDGDQEYDGSDETSEESHPPANSIRSAYRLLTPSVKVQLLIYFMLKYVMEILLSES  531 (619)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  531 (619)
                                                           +........+++++++  ++.++..++..++..........+.
T Consensus       241 -------------------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  281 (438)
T 3o7q_A          241 -------------------------------------DAKQGSFSASLSRLAR--IRHWRWAVLAQFCYVGAQTACWSYL  281 (438)
T ss_dssp             -------------------------------------CSSTTSHHHHHHHHTT--CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------------------------cccccchhhhHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                                 0001111223344443  6778888888888888888888999


Q ss_pred             hhh-hhhcccccchhHHHHHHHhhhhHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhhcccc
Q 047440          532 SVV-TTYYFGWSTGAVAIFLACLGLTVLPVNIIVGSYISNMFEDRQILLASEIMVCIGILFSFHVF  596 (619)
Q Consensus       532 ~~~-~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~~l~d~~g~r~~l~~~~~~~~i~~~~~~~~~  596 (619)
                      |.| +.+.+|++..+++...++..++.+++.++.+ ++.||+|+|+.+..+.++.+++++++...+
T Consensus       282 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  346 (438)
T 3o7q_A          282 IRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT-WLISRFAPHKVLAAYALIAMALCLISAFAG  346 (438)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHcC
Confidence            999 8888899999999999999999999999988 999999999999988888888877666554
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Back     alignment and structure
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Back     alignment and structure
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Back     alignment and structure
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* Back     alignment and structure
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} Back     alignment and structure
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Back     alignment and structure
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 619
d1pw4a_447 f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es 4e-04
d1pv7a_417 f.38.1.2 (A:) Lactose permease {Escherichia coli [ 0.002
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 19/210 (9%), Positives = 60/210 (28%), Gaps = 10/210 (4%)

Query: 233 PSPVEEHIDDQKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAM 292
              ++  + ++   ++++         Y +  +      +    +L  ++    +   A 
Sbjct: 239 QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 298

Query: 293 AIAQVFSSVYFSAWSNRSYFKPLVFSSIVLFIGNVMYALAYDFS-SIAVLLIGRLFCGFG 351
               +            +     VF   ++ I  ++Y +    + ++ ++ +  +     
Sbjct: 299 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY 358

Query: 352 SARAVNRRYISDCVPLKIRMQASAGFVSASAL-GMACGPALAGLLQTNFKIYKLTFNQNT 410
               +   +  +  P K    A+        L G     A+ G     F           
Sbjct: 359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWD-------- 410

Query: 411 LPGWIMAVAWLFYLVWLCISFKEPSRDIEE 440
               +M    +  ++ L +      R  E+
Sbjct: 411 GGFMVMIGGSILAVILLIVVMIGEKRRHEQ 440
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query619
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 99.95
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.8
d1pv7a_417 Lactose permease {Escherichia coli [TaxId: 562]} 99.22
d1pw4a_447 Glycerol-3-phosphate transporter {Escherichia coli 99.09
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=2.5e-27  Score=247.66  Aligned_cols=293  Identities=13%  Similarity=0.081  Sum_probs=217.8

Q ss_pred             cchhhHHHHHHHHHHHHHHhhhHhhccChHHHHHHhCCccchhhHHHhhHHHHHHHHhhhhhhhccccCchhHHHHHHHH
Q 047440          243 QKYHFMSLLLNLANTFLYMVNTYIIVPTADDYSMSLGAAATVCGIVIGAMAIAQVFSSVYFSAWSNRSYFKPLVFSSIVL  322 (619)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~Grr~~~~~~~~~  322 (619)
                      ++++|..+..++++.+...++...+....|.+ .++|+|.+++|++.+++.++++++++++|+++||+|||+++..++++
T Consensus        20 ~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~   98 (447)
T d1pw4a_          20 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL   98 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            34567666666666677666666666666644 57899999999999999999999999999999999999999888876


Q ss_pred             H-HHHHHHHHhhc-cCcHHHHHHHHHHhhccCcc--hhhhhhhhccCccchhhhHhHHHHHHHHHHhHHHHHHhhhhhcc
Q 047440          323 F-IGNVMYALAYD-FSSIAVLLIGRLFCGFGSAR--AVNRRYISDCVPLKIRMQASAGFVSASALGMACGPALAGLLQTN  398 (619)
Q Consensus       323 ~-i~~~l~~~~~~-~~~~~~l~~~r~l~G~~~~~--~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~g~~i~~~l~~~  398 (619)
                      . ++.++++++.. .++++.++++|++.|++.|.  +...++++|++|+++|++++|+.+.+..+|.+++|++++.+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~  178 (447)
T d1pw4a_          99 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW  178 (447)
T ss_dssp             HHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred             HHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhh
Confidence            5 77777766421 15788999999999999887  88899999999999999999999999999999999999888655


Q ss_pred             ccccceeccccchhHHHHHHHHHHHHHHHhhhccCCchhhhhhccccccCCCCCcchhhhhcCCCCcccCCCCCCCCcCC
Q 047440          399 FKIYKLTFNQNTLPGWIMAVAWLFYLVWLCISFKEPSRDIEENHTQEESNAEPVDNSALEKGLQQPLLITSEEKPEDEDG  478 (619)
Q Consensus       399 ~~~~~w~w~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (619)
                      .+  +|+|     .+++.+++.++..++.+++++++|+.......                              ++.+.
T Consensus       179 ~~--~w~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~  221 (447)
T d1pw4a_         179 FN--DWHA-----ALYMPAFCAILVALFAFAMMRDTPQSCGLPPI------------------------------EEYKN  221 (447)
T ss_dssp             TC--CSTT-----CTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC------------------------------TTTCC
T ss_pred             hh--cccc-----cchhhhhhHHHHHHHHHHhcccchhhcccchh------------------------------hhhhh
Confidence            44  6776     67777777777777777888887764332000                              00000


Q ss_pred             CCCCCCCCCCCCCCCCCCcchHHHHHhc-CcchHHHHHHHHHHHHHHHHHhhchhhhhhhcccccchhHHHHHHHhhhhH
Q 047440          479 DQEYDGSDETSEESHPPANSIRSAYRLL-TPSVKVQLLIYFMLKYVMEILLSESSVVTTYYFGWSTGAVAIFLACLGLTV  557 (619)
Q Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~  557 (619)
                      +.   ..+.......+...........+ ++.++......++......+...+.|.|+.+.++++..+.+....+..+++
T Consensus       222 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (447)
T d1pw4a_         222 DY---PDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG  298 (447)
T ss_dssp             C----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred             hc---ccchhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhh
Confidence            00   00000000001111111111222 566777777777888888888889999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhccchHHH
Q 047440          558 LPVNIIVGSYISNMFEDRQI  577 (619)
Q Consensus       558 ~~~~~~~g~~l~d~~g~r~~  577 (619)
                      +++.++.+ ++.||++++..
T Consensus       299 ~~~~~~~g-~~~~~~~~~~~  317 (447)
T d1pw4a_         299 IPGTLLCG-WMSDKVFRGNR  317 (447)
T ss_dssp             HHHHHHHH-HHHHHTSTTCH
T ss_pred             hhhhhhhh-hhhhhcccccc
Confidence            99999988 99999987643
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Back     information, alignment and structure