Citrus Sinensis ID: 047461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310--
Protein Sequence
GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVCL
Secondary Structure (PSIPRED)
ccccEEEEEEEcccccEEcccHHHHcccccccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEEEcccccccccccccccccccEEEccccccccccHHHHccccccEEEccccccccccccccccccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEcccccHccccHHHHHcccccEEEEEEcccccccccccccccccccHHHcEEEEccccccccccccccHHHHEEEEcccccHHHccccccccHcccEEEccccHHHHHcccccccHHHHHcccEEEccccccHccccccHHHHHHccEEEccccHHHcccccccHHHHHEEEccccccEcccccHHHHHcccEEEccccccHccccccHcccHcccEEEcccccHHHcccccHHcHHHHHEEEccccccccccccHHHHHcccEEEccccccccccccHHccccHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
gtekiegmcldmskvkelhpnsntftkmpklRFLKFYSSLfngenkckmsylqdpgfaevkylhwhgyplkslpsnlsaeklmllevpdsdikRLWDCVKHYSKLNQIIHAACHKLIakipnptlmprLNKLVTLnlrgskslkslpsgifnlefltkldlsgcsklkrlpeissgnisWLFLRGIAIEELPSSIERLLRLgyldlsdckrlkslpsslyrlkslgvlslcgcsnlqrlpeclgqlsspitfnLAKTNIERIPESIIQLFVSGYLLLSYgivedtlriqhtnhtpavrWQEIWQEVWLNVCL
Flexible Loop (DISEMBL)
gtekiegmcldmskvkelhpnsntftkmpkLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLkrlpeissgnisWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVCL
Low Complexity Region (SEG)
GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVCL
Disordered region (IsUnstruct)
************************FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC*
Disordered Region (DISOPRED)
GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENK*KMS***DPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTL*I*******AVRWQEIWQEVWLNVCL
Disordered Region (DISEMBL)
GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVCL
Disordered Region (DISPRO)
*TEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVCL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVCL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	312	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.871	0.143	0.361	1e-35
Q40392	1144	TMV resistance protein N	N/A	no	0.634	0.173	0.352	2e-19
O82500	1095	Putative disease resistan	no	no	0.810	0.231	0.296	2e-19
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.628	0.150	0.356	8e-19
Q9FH83	1288	Probable WRKY transcripti	no	no	0.788	0.190	0.310	1e-17
Q9FL92	1372	Probable WRKY transcripti	no	no	0.788	0.179	0.303	5e-17
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.849	0.164	0.259	5e-14
P0CB16	1201	Putative disease resistan	no	no	0.435	0.113	0.364	2e-10
Q9RBS2	1024	Protein PopC OS=Ralstonia	no	no	0.391	0.119	0.368	8e-10
Q8BGI7	337	Leucine-rich repeat-conta	yes	no	0.560	0.519	0.308	2e-07

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  150 bits (379), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 163/307 (53%), Gaps = 35/307 (11%)

Query: 1    GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF--A 58
            GT  IEG+ LDM  +K    N N F KM  LR LK Y S    E K  +S+ Q   +  +
Sbjct: 1149 GTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCS--KAEEKHGVSFPQGLEYLPS 1205

Query: 59   EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVK-HYSKLNQIIHAACHKLI 117
            +++ LHW  YPL SLP + + E L+ L +P S  K+LW   K  +   N  +       +
Sbjct: 1206 KLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRL 1265

Query: 118  AKIPNPTLMPRLN---------------------------KLVTLNLRGSKSLKSLPSGI 150
            +     T +PRL+                           KLV LNL+G   L+++PS +
Sbjct: 1266 SYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPS-M 1324

Query: 151  FNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCK 210
             +LE L  L+LSGCSKL   PEIS  N+  L++ G  I+E+PSSI+ L+ L  LDL + +
Sbjct: 1325 VDLESLEVLNLSGCSKLGNFPEISP-NVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSR 1383

Query: 211  RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLF 270
             LK+LP+S+Y+LK L  L+L GC +L+R P+   ++      +L++T+I+ +P SI  L 
Sbjct: 1384 HLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLT 1443

Query: 271  VSGYLLL 277
                LL 
Sbjct: 1444 ALDELLF 1450

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 96.7 bits (239), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/227 (35%), Positives = 115/227 (50%), Gaps = 29/227 (12%)

Query: 68  YPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMP 127
           YP +S PS    + L+ L++  + ++ LW   KH   L +I   +  K + + P+ T MP
Sbjct: 584 YPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRI-DLSWSKRLTRTPDFTGMP 642

Query: 128 RL---------------------NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK 166
            L                     +K++ L L   KSLK  P    N+E L  L L  C  
Sbjct: 643 NLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFP--CVNVESLEYLGLRSCDS 700

Query: 167 LKRLPEISSGNIS---WLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLYRL 222
           L++LPEI  G +     + ++G  I ELPSSI +    +  L L + K L +LPSS+ RL
Sbjct: 701 LEKLPEIY-GRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRL 759

Query: 223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQL 269
           KSL  LS+ GCS L+ LPE +G L +   F+ + T I R P SII+L
Sbjct: 760 KSLVSLSVSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRL 806

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 145/307 (47%), Gaps = 54/307 (17%)

Query: 1   GTEKIEGMCLDMSKVKE-LHPNSNTFTKMPKLRFLKFY-SSLFNGENKCKMSYLQDPGFA 58
           GT  + G+ LDM ++KE L+ +  TF +M  L +LKFY SS  + + K K+  L + G +
Sbjct: 525 GTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQ-LPEEGLS 583

Query: 59  ---EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVK--------------- 100
              +++ LHW  YPL+  PS+   E L+ L +  S +K+LW  V+               
Sbjct: 584 YLPQLRLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRN 643

Query: 101 --------HYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN 152
                     +KLN++    C  L+     P+ +  L  L+ L +   K L+ +P+ I N
Sbjct: 644 LEILPNLMEATKLNRLDLGWCESLVEL---PSSIKNLQHLILLEMSCCKKLEIIPTNI-N 699

Query: 153 LEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSS----------------IE 196
           L  L  L    C++L+  PEIS+ NI  L L G AI E+P S                ++
Sbjct: 700 LPSLEVLHFRYCTRLQTFPEIST-NIRLLNLIGTAITEVPPSVKYWSKIDEICMERAKVK 758

Query: 197 RLLRLGY----LDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITF 252
           RL+ + Y    L L + K L+++P  L  L  L ++ +  C N+  LP+  G +S+    
Sbjct: 759 RLVHVPYVLEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAV 818

Query: 253 NLAKTNI 259
           N     I
Sbjct: 819 NCESLQI 825

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 94.7 bits (234), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/219 (35%), Positives = 113/219 (51%), Gaps = 23/219 (10%)

Query: 48  KMSYLQDPGFAEVKYLHWHGY-PLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN 106
           ++++L   G+   K   W G   L SL     +E   L E+PD         +   +KL 
Sbjct: 751 QLAFLNVRGYKHEKL--WEGIQSLGSLEGMDLSESENLTEIPD---------LSKATKLE 799

Query: 107 QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSK 166
            +I   C  L+     P+ +  L++LV L ++    L+ LP+ + NL  L  LDLSGCS 
Sbjct: 800 SLILNNCKSLVTL---PSTIGNLHRLVRLEMKECTGLEVLPTDV-NLSSLETLDLSGCSS 855

Query: 167 LKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG 226
           L+  P IS+ NI WL+L   AIEE+PS+I  L RL  L++  C  L+ LP+ +  L SL 
Sbjct: 856 LRSFPLIST-NIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSSLE 913

Query: 227 VLSLCGCSNLQRLPECLGQLSSPITF-NLAKTNIERIPE 264
            L L GCS+L+  P     +S  I +  L  T IE IP+
Sbjct: 914 TLDLSGCSSLRSFP----LISESIKWLYLENTAIEEIPD 948

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 140/306 (45%), Gaps = 60/306 (19%)

Query: 1   GTEKIEGMCLDMSKVK-ELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFA- 58
           G+E+IEG+ LD S ++ +L P++  F  M  LR LK Y S  N E    +++      + 
Sbjct: 497 GSEEIEGLFLDTSNLRFDLQPSA--FKNMLNLRLLKIYCS--NPEVHPVINFPTGSLHSL 552

Query: 59  --EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKL 116
             E++ LHW  YPLKSLP N     L+ + +P S +++LW   K+   L  I     H L
Sbjct: 553 PNELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHL 612

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG 176
           +    +   + +   L  ++L+G   L++ P+    L  L  ++LSGC K+K + EI   
Sbjct: 613 V----DIDDLLKAENLEVIDLQGCTRLQNFPAA-GRLLRLRVVNLSGCIKIKSVLEIPP- 666

Query: 177 NISWLFLRGIAIEELP-----------------------------------SSIERLLRL 201
           NI  L L+G  I  LP                                   SS + L +L
Sbjct: 667 NIEKLHLQGTGILALPVSTVKPNHRELVNFLTEIPGLSEELERLTSLLESNSSCQDLGKL 726

Query: 202 GYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL---QRLPECLGQLSSPITFNLAKTN 258
             L+L DC  L+SLP ++  L  L VL L GCS+L   Q  P  L QL       L  T 
Sbjct: 727 ICLELKDCSCLQSLP-NMANL-DLNVLDLSGCSSLNSIQGFPRFLKQLY------LGGTA 778

Query: 259 IERIPE 264
           I  +P+
Sbjct: 779 IREVPQ 784

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 88.6 bits (218), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 134/310 (43%), Gaps = 64/310 (20%)

Query: 3   EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSS---LFNGENKCKMSYLQDPGFAE 59
           E+IEGM LD S +         F  M  LR  K YSS   + +  N  K S    P    
Sbjct: 492 EEIEGMFLDTSNLS-FDIKHVAFDNMLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNV-- 548

Query: 60  VKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAK 119
           ++ LHW  YPL+ LP N     L+ + +P S +K+LW   K    L  I    CH    +
Sbjct: 549 LRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTI--RLCHS--QQ 604

Query: 120 IPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNIS 179
           + +   + +   L  ++L+G   L+S P+    L  L  ++LSGC+++K  PEI   NI 
Sbjct: 605 LVDIDDLLKAQNLEVVDLQGCTRLQSFPA-TGQLLHLRVVNLSGCTEIKSFPEIPP-NIE 662

Query: 180 WLFLRGIAIEELPSSI-----ERLL----------------------------------- 199
            L L+G  I ELP SI       LL                                   
Sbjct: 663 TLNLQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQN 722

Query: 200 --RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL---QRLPECLGQLSSPITFNL 254
             +L  L+L+DC RL+SLP ++  L+ L  L L GCS L   Q  P  L +L       L
Sbjct: 723 PGKLSCLELNDCSRLRSLP-NMVNLELLKALDLSGCSELETIQGFPRNLKELY------L 775

Query: 255 AKTNIERIPE 264
             T + ++P+
Sbjct: 776 VGTAVRQVPQ 785

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 134/293 (45%), Gaps = 28/293 (9%)

Query: 2   TEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVK 61
            E IE + LD S VK      + F  M  L+FLK Y+S     +        D    E++
Sbjct: 516 AEHIESIFLDTSNVK-FDVKHDAFKNMFNLKFLKIYNSCSKYISGLNFPKGLDSLPYELR 574

Query: 62  YLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIP 121
            LHW  YPL+SLP +     L+ L +P S + +L   VK    L ++I +   +L+    
Sbjct: 575 LLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLV---- 630

Query: 122 NPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWL 181
              ++     +  ++L+G   L+  P     L+ L  ++LSGC+++K    +   NI  L
Sbjct: 631 ECDILIYAQNIELIDLQGCTGLQRFPD-TSQLQNLRVVNLSGCTEIKCFSGVPP-NIEEL 688

Query: 182 FLRGIAIEELP------------------SSIERLLRLGYLDLSDCKRLKSLPSSLYRLK 223
            L+G  I E+P                  + +E    + ++DL     L ++ S+ + + 
Sbjct: 689 HLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHIDLECVTNLATVTSNNHVMG 748

Query: 224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI---PESIIQLFVSG 273
            L  L++  CSNL+ LP+ +   S  + +    + +E+I   P ++ +L+V G
Sbjct: 749 KLVCLNMKYCSNLRGLPDMVSLESLKVLYLSGCSELEKIMGFPRNLKKLYVGG 801

Arabidopsis thaliana (taxid: 3702)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 12/148 (8%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKL---DLSGCSKLKRLPEISSGNIS 179
           P  +  L+ L  L +R    LK+LP    NLE LT L   D+SGC++L+ + E S  N+S
Sbjct: 765 PDKISELSNLKELIIRKCSKLKTLP----NLEKLTNLEIFDVSGCTELETI-EGSFENLS 819

Query: 180 WLF---LRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL 236
            L    L    + ELP+ I  L  L  L L +C +LK+LP+ L +L  L +  + GC+NL
Sbjct: 820 CLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALPN-LEKLTHLVIFDVSGCTNL 878

Query: 237 QRLPECLGQLSSPITFNLAKTNIERIPE 264
            ++ E    +S     NL+ TN++  PE
Sbjct: 879 DKIEESFESMSYLCEVNLSGTNLKTFPE 906

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 3/125 (2%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGN-ISWL 181
           P  +  L  L TL+L+G+K+ K+LP  ++ L  L +L LS  + LK LP +  G+ +  L
Sbjct: 240 PATLENLFLLETLSLKGAKNFKALPDAVWRLPALQELKLSE-TGLKSLPPVGGGSALQRL 298

Query: 182 FLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE 241
            +    +E+LP+    L +L  L LS+ K L+ L S + +L +L  LSL     L+RLP+
Sbjct: 299 TIEDSPLEQLPAGFADLDQLASLSLSNTK-LEKLSSGIGQLPALKSLSLQDNPKLERLPK 357

Query: 242 CLGQL 246
            LGQ+
Sbjct: 358 SLGQV 362

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q8BGI7|LRC39_MOUSE Leucine-rich repeat-containing protein 39 OS=Mus musculus GN=Lrrc39 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 97/185 (52%), Gaps = 10/185 (5%)

Query: 104 KLNQIIHAACHKL-IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLS 162
           KLNQ+     H+  + KIP    + R   L+ L+L    ++  +P GI  L  L +L LS
Sbjct: 81  KLNQLQEWQLHRTGLLKIPE--FIGRFQHLIVLDL-SRNTISEIPRGIGLLTRLQELILS 137

Query: 163 GCSKLKRLPEISSGNISWLFLR---GIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSL 219
             +K+K +P+  S   S   L       I +LP  + +LL+L +LDLS   +  ++P ++
Sbjct: 138 -YNKIKTVPKELSNCTSLEKLELAVNRDISDLPPELSKLLKLTHLDLS-MNQFTTIPHAV 195

Query: 220 YRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSY 279
             + +L  L + G ++LQ+LP+ L ++ S  T  L +  I  +PE+I  +   G L+LS 
Sbjct: 196 LDMPALEWLDM-GSNSLQQLPDSLDRMRSLHTLWLQRNEITCLPETIKNMKNLGTLVLSN 254

Query: 280 GIVED 284
             ++D
Sbjct: 255 NKLQD 259

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
359486071	1261	PREDICTED: TMV resistance protein N-like	0.855	0.211	0.399	3e-41
359486073	1296	PREDICTED: TMV resistance protein N-like	0.875	0.210	0.405	4e-41
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.887	0.246	0.360	4e-41
225460354	1174	PREDICTED: TMV resistance protein N-like	0.830	0.220	0.390	1e-40
359486075	1291	PREDICTED: TMV resistance protein N-like	0.875	0.211	0.398	3e-40
359496030	1195	PREDICTED: TMV resistance protein N-like	0.785	0.205	0.397	1e-39
359496026	1250	PREDICTED: TMV resistance protein N-like	0.948	0.236	0.366	1e-39
359493487	1162	PREDICTED: TMV resistance protein N-like	0.852	0.228	0.382	2e-39
359495221	1181	PREDICTED: TMV resistance protein N-like	0.871	0.230	0.402	5e-39
147822714	1254	hypothetical protein VITISV_015601 [Viti	0.871	0.216	0.402	5e-39

>gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  175 bits (443), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 123/308 (39%), Positives = 166/308 (53%), Gaps = 41/308 (13%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGEN--------------K 46
           GTE +EGM L++S +KELH + N FTKM KLR L+FY +   G +              +
Sbjct: 530 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIGRHNDRYKSPYTE 589

Query: 47  CKMSYLQDPGF--AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSK 104
           CK     D  F    ++ LHW GYPLKSLPSN   EKL+ L++  S +++LW+  K + K
Sbjct: 590 CKFHLSGDFKFLSNHLRSLHWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 649

Query: 105 LNQIIHAACHKLIAKIPNPTLMPR---------------------LNKLVTLNLRGSKSL 143
           L  I  +    LI K P+ +  P+                     L KL+ LNL G K+L
Sbjct: 650 LKFIELSHSQHLI-KTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNL 708

Query: 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLRGIAIEELPSSIERLLRL 201
           KS  S I +LE L  + LSGCSKLK+ PE+     N+  L L+G AI+ LP SIE L  L
Sbjct: 709 KSFSSSI-HLESLQTITLSGCSKLKKFPEVQGAMDNLPELSLKGTAIKGLPLSIEYLNGL 767

Query: 202 GYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIER 261
             L+L +CK L+SLP  +++LKSL  L L  CS L++LPE    + S     L  T +  
Sbjct: 768 SLLNLEECKSLESLPGCIFKLKSLKTLILSNCSRLKKLPEIQENMESLKKLFLDDTGLRE 827

Query: 262 IPESIIQL 269
           +P SI  L
Sbjct: 828 LPSSIEHL 835

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  174 bits (442), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 128/316 (40%), Positives = 172/316 (54%), Gaps = 43/316 (13%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGEN--------------K 46
           GTE +EGM L++S +KELH + N FTKM KLR L+FY +   G +              +
Sbjct: 535 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 594

Query: 47  CKMSYLQDPGF--AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSK 104
           CK     D  F    ++ L+W GYPLKSLPSN   EKL+ L++  S +++LW+  K + K
Sbjct: 595 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 654

Query: 105 LNQIIHAACHKLIAKIPNPTLMPRL---------------------NKLVTLNLRGSKSL 143
           L  I  +    LI K P+ +  P+L                      KL+ LNL G K+L
Sbjct: 655 LKFIELSHSQHLI-KTPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNL 713

Query: 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLRGIAIEELPSSIERLLRL 201
           KS  S I +LE L  L LSGCSKLK+ PE+     N S L L+G AI+ LP SIE L  L
Sbjct: 714 KSFLSSI-HLESLQILTLSGCSKLKKFPEVQGPMDNFSELSLKGTAIKGLPLSIEYLNGL 772

Query: 202 GYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIER 261
             L+L +CK L+SLPS +++LKSL  L L  CS L++LPE    + S     L  T +  
Sbjct: 773 ALLNLEECKSLESLPSCIFKLKSLKTLILSNCSRLKKLPEIGENMESLKELFLDDTGLRE 832

Query: 262 IPESIIQLFVSGYLLL 277
           +P SI  L  +G +LL
Sbjct: 833 LPSSIEHL--NGLVLL 846

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  174 bits (441), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 123/341 (36%), Positives = 179/341 (52%), Gaps = 64/341 (18%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYS-----SLFNGENKCK------- 48
           GTE +EG+CLD+S+ +E+H  S+ F++M +LR LKF++      +F  +NK K       
Sbjct: 527 GTEAVEGICLDISESREMHLKSDAFSRMDRLRILKFFNHFSLDEIFIMDNKDKVHLPHSG 586

Query: 49  MSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI 108
           + YL D    E++YLHW G+PLK+LP +  AE ++ L  PDS I++LW  V+    L ++
Sbjct: 587 LDYLSD----ELRYLHWDGFPLKTLPQSFCAENIVELIFPDSKIEKLWTGVQDLVHLRRM 642

Query: 109 IHAACHKLIAKIP----------------------NPTLMPRLNKLVTLNLRGSKSLKSL 146
             +    L+ +IP                      NP++   L KL  L L    +L+SL
Sbjct: 643 DLSGSPYLL-EIPDLSMAENIESINLKFCKSLIEVNPSIQ-YLTKLEVLQLSYCDNLRSL 700

Query: 147 PSGIF-----------------------NLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 183
           PS I                        N   L K+DL  C+ + + PEIS GNI +L+L
Sbjct: 701 PSRIGSKVLRILDLYHCINVRICPAISGNSPVLRKVDLQFCANITKFPEIS-GNIKYLYL 759

Query: 184 RGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL 243
           +G AIEE+PSSIE L  L  L +++CK+L S+PSS+ +LKSL VL L GCS L+  PE +
Sbjct: 760 QGTAIEEVPSSIEFLTALVRLYMTNCKQLSSIPSSICKLKSLEVLGLSGCSKLENFPEIM 819

Query: 244 GQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED 284
             + S     L  T I+ +P SI  L     L L    +E+
Sbjct: 820 EPMESLRRLELDATAIKELPSSIKYLKFLTQLKLGVTAIEE 860

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 114/292 (39%), Positives = 167/292 (57%), Gaps = 33/292 (11%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEV 60
           GTE +EG+ LD+S  KELH ++  FT+M +LR L+FY+   NG     + +L +     +
Sbjct: 534 GTEAVEGLVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNG----NLKFLSN----NL 585

Query: 61  KYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKI 120
           + L+WH YPLKSLPSN   +KL+ L +  S +++LW   K + KL + I  +  + + + 
Sbjct: 586 RSLYWHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKL-KFIKLSHSQYLTRT 644

Query: 121 PNPTLMPRL---------------------NKLVTLNLRGSKSLKSLPSGIFNLEFLTKL 159
           P+ +  P L                      KL+ LNL G K+LKS  S I ++  L  L
Sbjct: 645 PDFSGAPNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSI-HMNSLQIL 703

Query: 160 DLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPS 217
            LSGCSKLK+ PE+  +  ++  L L   A+ ELPSSI RL  L  L+L++CK+L SLP 
Sbjct: 704 TLSGCSKLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQ 763

Query: 218 SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQL 269
           SL +L SL +L+L GCS L++LP+ LG L   +  N   + I+ +P SI  L
Sbjct: 764 SLCKLTSLQILTLAGCSELKKLPDELGSLRCLVNLNADGSGIQEVPPSITLL 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/316 (39%), Positives = 171/316 (54%), Gaps = 43/316 (13%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGEN--------------K 46
           GTE +EGM L++S +KELH + N FTKM KLR L+FY +   G +              +
Sbjct: 530 GTEAVEGMVLNLSTLKELHFSVNVFTKMNKLRVLRFYDAQIWGSSWIWRRNDRYKSPYTE 589

Query: 47  CKMSYLQDPGF--AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSK 104
           CK     D  F    ++ L+W GYPLKSLPSN   EKL+ L++  S +++LW+  K + K
Sbjct: 590 CKFHLSGDFKFLSNHLRSLYWDGYPLKSLPSNFHPEKLLELKMCFSQLEQLWEGNKSFQK 649

Query: 105 LNQIIHAACHKLIAKIPNPTLMPR---------------------LNKLVTLNLRGSKSL 143
           L  I  +    LI K P+ +  P+                     L KL+ LNL G K+L
Sbjct: 650 LKFIELSHSQHLI-KAPDFSGAPKLRRIILEGCTSLVKVHPSIGALKKLIFLNLEGCKNL 708

Query: 144 KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLRGIAIEELPSSIERLLRL 201
           KS  S I +LE L  L LSGCSKLK+LPE+     N+S L L+G AI+ LP SIE L  L
Sbjct: 709 KSFLSSI-HLESLQILTLSGCSKLKKLPEVQGAMDNLSELSLKGTAIKGLPLSIEYLNGL 767

Query: 202 GYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIER 261
              +L +CK L+SLP  +++LKSL  L L  C  L++LPE    + S     L  T +  
Sbjct: 768 ALFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDDTGLRE 827

Query: 262 IPESIIQLFVSGYLLL 277
           +P SI  L  +G +LL
Sbjct: 828 LPSSIEHL--NGLVLL 841

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496030|ref|XP_002277205.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/277 (39%), Positives = 162/277 (58%), Gaps = 32/277 (11%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKC-------KMSYLQ 53
           GTE++EG+ LD+S ++E+H  S  FT++ KLR LK Y S  + ++KC       K+ +  
Sbjct: 655 GTEEVEGIFLDLSNLQEIHFTSEGFTRINKLRLLKVYKSHISKDSKCTFKKEECKVYFSH 714

Query: 54  DPGFA--EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QII 109
           +  F   +++YL+W+GY LKSLP N + E+L+   +P S IK+LW  +K   KL   ++ 
Sbjct: 715 NLKFHSNDLRYLYWYGYSLKSLPDNFNPERLLEFNMPYSHIKQLWKGIKVLEKLKFMELS 774

Query: 110 HAACHKLIAKIPNPTLMPRL------------------NKLVTLNLRGSKSLKSLPSGIF 151
           H+ C   I  +   + + RL                  NKL+ L+LR   +L+  P+ I 
Sbjct: 775 HSQCLVEIPDLSRASNLERLVLEGCIHLCAIHPSLGVLNKLIFLSLRDCINLRHFPNSI- 833

Query: 152 NLEFLTKLDLSGCSKLKRLPEISS--GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC 209
            L+ L    LSGCSKL++ PEI     ++S LFL GI IEELPSSIE  + L  LDL++C
Sbjct: 834 ELKSLQIFILSGCSKLEKFPEIRGYMEHLSELFLDGIGIEELPSSIEYAIGLVVLDLTNC 893

Query: 210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQL 246
           K L+SLP+S+  L+SL  L L  CS L+ LP+  G+L
Sbjct: 894 KELRSLPNSICNLESLKTLLLSDCSKLESLPQNFGKL 930

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  169 bits (428), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 126/344 (36%), Positives = 181/344 (52%), Gaps = 48/344 (13%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGE-------NKCKMSYLQ 53
           GTE IEG+ L++  +KE+H  +  F +M KLR LK Y+S  +G+          K  + Q
Sbjct: 539 GTENIEGIFLNLYGLKEIHYTTEAFAEMKKLRLLKVYNSHNSGDFEYASRNENYKRPFSQ 598

Query: 54  DPGFA--EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHA 111
           D  F   +++YL+WH YPLKSLPSN   + L+ L +    ++ LW  VKH  KL + I  
Sbjct: 599 DFEFPSNKLRYLYWHRYPLKSLPSNFHPKNLVELNLCCCYVEELWKGVKHMEKL-ECIDL 657

Query: 112 ACHKLIAKIPNPTLMPRL---------------------NKLVTLNLRGSKSLKSLPSGI 150
           +  + + + P+ + +P L                     +KL+ LNL+  K+L+  PS I
Sbjct: 658 SHSQYLVRTPDFSGIPNLERLIFEGCTDLREVHQSLGVLSKLIFLNLKDCKNLQCFPSSI 717

Query: 151 FNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSD 208
             LE L  L LSGCSKL   PEI  +   +  LFL G AI+ELP S+E L  L  L+L +
Sbjct: 718 -ELESLKVLILSGCSKLDNFPEILENMEGLRELFLDGTAIKELPLSVEHLNGLVLLNLRN 776

Query: 209 CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQ 268
           C+RL +LPSS+  LKSL  L+L GCS L++LPE LG L   +      + + + P SI+ 
Sbjct: 777 CERLITLPSSICNLKSLSTLTLSGCSQLEKLPENLGNLECLVELVADGSAVIQPPSSIV- 835

Query: 269 LFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVCL 312
                 LL +  +    L  Q  N +P+ RW       W  +CL
Sbjct: 836 ------LLRNLKV----LSFQGCNGSPSSRWN---SRFWSMLCL 866

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  168 bits (426), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/319 (38%), Positives = 168/319 (52%), Gaps = 53/319 (16%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLK--------------------FYSSL 40
           GTE +EG+ LD+S+ KEL+ + + FTKM +LR LK                    +   +
Sbjct: 532 GTEAVEGIFLDLSESKELNFSIDAFTKMKRLRLLKICNVQIDRSLGYLSKKELIAYTHDV 591

Query: 41  FNGEN----KCKMSYLQDPGF--AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKR 94
           +   N    + K+   +D  F    ++ L+WHGYPLKS PSN   EKL+ L +  S +K+
Sbjct: 592 WTERNYLYTQNKLHLYEDSKFLSNNLRDLYWHGYPLKSFPSNFHPEKLVELNMCFSRLKQ 651

Query: 95  LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL---------------------NKLV 133
           LW+  K + KL  I  +    L  K P+ + +P L                      KL+
Sbjct: 652 LWEGKKGFEKLKSIKLSHSQHL-TKTPDFSGVPNLRRLILKGCTSLVEVHPSIGALKKLI 710

Query: 134 TLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWL---FLRGIAIEE 190
            LNL G K LKS  S I ++E L  L LSGCSKLK+ PE+  GN+  L    L G AI+ 
Sbjct: 711 FLNLEGCKKLKSFSSSI-HMESLQILTLSGCSKLKKFPEVQ-GNMEHLPNLSLEGTAIKG 768

Query: 191 LPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPI 250
           LP SIE L  L  L+L +CK L+SLP S+++LKSL  L+LCGCS L+ LP+ LG L    
Sbjct: 769 LPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLTLCGCSELKELPDDLGSLQCLA 828

Query: 251 TFNLAKTNIERIPESIIQL 269
             N   + I+ +P SI  L
Sbjct: 829 ELNADGSGIQEVPPSITLL 847

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495221|ref|XP_002274238.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  167 bits (424), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 165/303 (54%), Gaps = 31/303 (10%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFA-- 58
           GT+ IEG+ LDMS  KE+H  ++ F KM KLR L+ Y +L N  +   +   QD  F   
Sbjct: 518 GTQAIEGIFLDMSASKEIHLTTDAFKKMKKLRLLRVYHNLKNISDTIHLP--QDFKFPSH 575

Query: 59  EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIA 118
           E++YLHW G+ L+SLPSN   EKL+ L +  S IKRLW   K   KL ++I+ +  + + 
Sbjct: 576 ELRYLHWDGWTLESLPSNFHGEKLVELSLKHSSIKRLWKEHKCLGKL-KVINLSNSQHLV 634

Query: 119 KIPNPTLMP---------------------RLNKLVTLNLRGSKSLKSLPSGIFNLEFLT 157
           + PN +  P                     +L +L  LN++  K L   PS I  LE L 
Sbjct: 635 ECPNLSGAPHVKRLILDGCTSLLEVHPSVAKLKRLTILNMKNCKMLHHFPS-ITGLESLK 693

Query: 158 KLDLSGCSKLKRLPEISS--GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSL 215
            L+LSGCSKL + PEI      +S L L G AI ELPSS+  L +L  LD+ +CK LK L
Sbjct: 694 VLNLSGCSKLDKFPEIQGYMEYLSELNLEGTAIVELPSSVVFLPQLVSLDMKNCKNLKIL 753

Query: 216 PSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYL 275
           PS++  LKSL  L   GCS L+  PE +  + S     L  T+I+ +P SI+ L   G  
Sbjct: 754 PSNICSLKSLETLVFSGCSGLEMFPEIMEVMESLQKLLLDGTSIKELPPSIVHL--KGLQ 811

Query: 276 LLS 278
           LLS
Sbjct: 812 LLS 814

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822714|emb|CAN68293.1| hypothetical protein VITISV_015601 [Vitis vinifera]

 Score =  167 bits (423), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 165/303 (54%), Gaps = 31/303 (10%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFA-- 58
           GT+ IEG+ LDMS  KE+H  ++ F KM KLR L+ Y +L N  +   +   QD  F   
Sbjct: 531 GTQAIEGIFLDMSASKEIHLTTDAFKKMKKLRLLRVYHNLKNISDTIHLP--QDFKFPSH 588

Query: 59  EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIA 118
           E++YLHW G+ L+SLPSN   EKL+ L +  S IKRLW   K   KL ++I+ +  + + 
Sbjct: 589 ELRYLHWDGWTLESLPSNFHGEKLVELSLKHSSIKRLWKEHKCLGKL-KVINLSNSQHLV 647

Query: 119 KIPNPTLMP---------------------RLNKLVTLNLRGSKSLKSLPSGIFNLEFLT 157
           + PN +  P                     +L +L  LN++  K L   PS I  LE L 
Sbjct: 648 ECPNLSGAPHVKRLILDGCTSLLEVHPSVAKLKRLTILNMKNCKMLHHFPS-ITGLESLK 706

Query: 158 KLDLSGCSKLKRLPEISS--GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSL 215
            L+LSGCSKL + PEI      +S L L G AI ELPSS+  L +L  LD+ +CK LK L
Sbjct: 707 VLNLSGCSKLDKFPEIQGYMEYLSELNLEGTAIVELPSSVVFLPQLVSLDMKNCKNLKIL 766

Query: 216 PSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYL 275
           PS++  LKSL  L   GCS L+  PE +  + S     L  T+I+ +P SI+ L   G  
Sbjct: 767 PSNICSLKSLETLVFSGCSGLEMFPEIMEVMESLQKLLLDGTSIKELPPSIVHL--KGLQ 824

Query: 276 LLS 278
           LLS
Sbjct: 825 LLS 827

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	312
TAIR|locus:2153207	1165	AT5G45060 [Arabidopsis thalian	0.814	0.218	0.362	2.4e-29
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.810	0.206	0.367	1.4e-28
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.810	0.200	0.350	1.5e-28
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.814	0.134	0.357	1.9e-27
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.820	0.188	0.354	4.1e-27
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.820	0.218	0.332	3.5e-25
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.823	0.198	0.300	5.2e-25
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.762	0.195	0.333	6.1e-25
TAIR|locus:2153328	1231	AT5G45230 [Arabidopsis thalian	0.852	0.216	0.308	1e-24
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.810	0.236	0.326	1.3e-24

TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 98/270 (36%), Positives = 145/270 (53%)

Query:     1 GTEKIEGMCLDMSKVK-ELHPNSNTFTKMPKLRFLKFYSSLFNGE----NKCKM-SYLQD 54
             G   + G+ LD+S+VK E   +   F  M  LR+LK Y+S    E    NK  M   L+ 
Sbjct:   553 GAANVRGIFLDLSEVKVETSLDREHFKNMRNLRYLKLYNSHCPHECLTNNKINMPDGLEL 612

Query:    55 PGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACH 114
             P   EV+ LHW  +PL+ LP++     L+ L++P S+I+RLWD VK    L  +     H
Sbjct:   613 P-LKEVRCLHWLKFPLEELPNDFDPINLVDLKLPYSEIERLWDGVKDTPVLKWV--DLNH 669

Query:   115 KLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS 174
                +K+ + + + +   L  LNL G  SL+SL     NL  L  L LS CS  K  P I 
Sbjct:   670 S--SKLCSLSGLSKAQNLQRLNLEGCTSLESLRD--VNLTSLKTLTLSNCSNFKEFPLIP 725

Query:   175 SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS 234
               N+  L+L G +I +LP ++  L RL  L++ DCK L+++P+ +  LK+L  L L GCS
Sbjct:   726 E-NLKALYLDGTSISQLPDNVGNLKRLVLLNMKDCKVLETIPTCVSELKTLQKLVLSGCS 784

Query:   235 NLQRLPECLGQLSSPITFNLAKTNIERIPE 264
              L+  PE + + S  I   L  T+I+ +P+
Sbjct:   785 KLKEFPE-INKSSLKILL-LDGTSIKTMPQ 812

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.4e-28, P = 1.4e-28
 Identities = 100/272 (36%), Positives = 143/272 (52%)

Query:     1 GTEKIEGMCLDMSKVK-ELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSY---LQDP- 55
             G E + G+ L+M+++K E+  +S TF  M  LR+LK YSS  +   +CK +    L D  
Sbjct:   546 GAE-VRGIFLNMNEMKREMSLDSCTFKSMCGLRYLKIYSS--HCPQQCKPNNKINLPDGL 602

Query:    56 GFA--EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS--KLNQIIHA 111
              F   EV+YLHW  +PLK +P + + + L+ L++P S I+R+W   KH    KL  +   
Sbjct:   603 NFPLKEVRYLHWLEFPLKEIPPDFNPQNLVDLKLPHSKIERIWSDDKHKDTPKLKWV--N 660

Query:   112 ACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP 171
               H   + + + + + +  +LV LNL+G  SLKSLP    NL  L  L LS CS LK   
Sbjct:   661 LSHS--SNLWDISGLSKAQRLVFLNLKGCTSLKSLPE--INLVSLEILILSNCSNLKEFR 716

Query:   172 EISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLC 231
              IS  N+  L+L G +I+ELP +   L RL  L++  C +LK  P  L  LK+L  L L 
Sbjct:   717 VISQ-NLETLYLDGTSIKELPLNFNILQRLVILNMKGCAKLKEFPDCLDDLKALKELILS 775

Query:   232 GCSNLQRLPECLGQLSSPITFNLAKTNIERIP 263
              C  LQ  P    ++       L  T I  IP
Sbjct:   776 DCWKLQNFPAICERIKVLEILRLDTTTITEIP 807

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 94/268 (35%), Positives = 149/268 (55%)

Query:     4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDP-GFA---- 58
             K+ G+ LDM +VKE+  +S+TF KM  LR+LKFY+S  + E + + S L  P G      
Sbjct:   558 KVRGVYLDMFEVKEMGLDSDTFNKMDDLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQ 617

Query:    59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIA 118
             E++YL+W  YP K+LP N   + L+ L++P S I+++W+  K  S L  +     H   +
Sbjct:   618 ELRYLNWLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWL--DLNHS--S 673

Query:   119 KIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNI 178
             K+ + + + R  KL ++NL G   LK+LP  + N+E L  L+L GC+ L+ LP+I+   +
Sbjct:   674 KLHSLSGLSRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGCTSLESLPDITLVGL 733

Query:   179 SWLFLRGIA-IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQ 237
               L L   +  +E     + L  L YLD +    +K LPS++  L+ L  L L  C NL 
Sbjct:   734 RTLILSNCSRFKEFKLIAKNLEEL-YLDGT---AIKELPSTIGDLQKLISLKLKDCKNLL 789

Query:   238 RLPECLGQLSSPITFNLAK-TNIERIPE 264
              LP+ +G L +     L+  +++E  PE
Sbjct:   790 SLPDSIGNLKAIQEIILSGCSSLESFPE 817

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 1.9e-27, P = 1.9e-27
 Identities = 98/274 (35%), Positives = 148/274 (54%)

Query:    13 SKVKELHPNS--NTFTKMP-KLRFL--KFY--SSL---FNGENKCKMSYLQDPGFAEVKY 62
             SK +E H  S       +P KLR L  ++Y  SSL   FN EN  +++    P     K 
Sbjct:  1186 SKAEEKHGVSFPQGLEYLPSKLRLLHWEYYPLSSLPKSFNPENLVELNL---PSSCAKKL 1242

Query:    63 LHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPN 122
               W G   +   +N S EKL  + +  SD       +   + L  I    C+ L++   +
Sbjct:  1243 --WKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQS 1300

Query:   123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 182
                +  L KLV LNL+G   L+++PS + +LE L  L+LSGCSKL   PEIS  N+  L+
Sbjct:  1301 ---ISYLKKLVFLNLKGCSKLENIPSMV-DLESLEVLNLSGCSKLGNFPEISP-NVKELY 1355

Query:   183 LRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPEC 242
             + G  I+E+PSSI+ L+ L  LDL + + LK+LP+S+Y+LK L  L+L GC +L+R P+ 
Sbjct:  1356 MGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDS 1415

Query:   243 LGQLSSPITFNLAKTNIERIPESIIQLFVSGYLL 276
               ++      +L++T+I+ +P SI  L     LL
Sbjct:  1416 SRRMKCLRFLDLSRTDIKELPSSISYLTALDELL 1449

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 4.1e-27, P = 4.1e-27
 Identities = 97/274 (35%), Positives = 141/274 (51%)

Query:     2 TEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKM-SYLQD-PGFAE 59
             TE IE + LDMS +K      + F  M  LRFLK YSS      + +    LQ  P   E
Sbjct:   359 TEDIEVIFLDMSNLK-FFVKPDAFKSMHNLRFLKIYSSNPGKHQRIRFREALQSLPN--E 415

Query:    60 VKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAK 119
             ++ LHW  YPL+SLP +     L+ L +P S +++LW   K+   L  +  +    L+ +
Sbjct:   416 LRLLHWEDYPLQSLPQHFDPTHLVELNMPYSKLQKLWGGTKNLEMLKMVRLSHSQDLV-E 474

Query:   120 IPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEISS-- 175
             I    L+   N +  ++L+G   ++S P+   +L+ L  ++LSGC ++K  +L E     
Sbjct:   475 IEE--LIKSKN-IEVIDLQGCTKIQSFPA-TRHLQHLRVINLSGCVEIKSTQLEEFQGFP 530

Query:   176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSN 235
              N+  L+L G  I E+ SSI  L  L  LDLS+CKRL++LP     L SL  L L GCS 
Sbjct:   531 RNLKELYLSGTGIREVTSSIH-LSSLEVLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSK 589

Query:   236 LQRLPECLGQLSSPITFNLAKTNIERIPESIIQL 269
             LQ + +    L       LA T+I  +P SI  L
Sbjct:   590 LQNIQDLPTNLKE---LYLAGTSIREVPSSICHL 620

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 3.5e-25, P = 3.5e-25
 Identities = 90/271 (33%), Positives = 141/271 (52%)

Query:     3 EKIEGMCLDMSKV-KELHPNSNTFTKMPKLRFLKFYSSLFN--GENKCKMSYLQDPGFA- 58
             E + G+ LDMSKV +E+  + N F+ M  LR+LK YSS+ +  GE   K   +++     
Sbjct:   596 ENVRGIFLDMSKVPEEMTFDGNIFSNMCNLRYLKIYSSVCHKEGEGIFKFDTVREIQLPL 655

Query:    59 -EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLI 117
              +V+YLHW  YP + LPS+ + E L+ LE+P S IK++W+ VK       I+  A     
Sbjct:   656 DKVRYLHWMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKD----TPILKWANLSYS 711

Query:   118 AKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGN 177
             +K+ N   +     L  LNL G  SL  LP  + N++ L  L++  C+ L  L  I   +
Sbjct:   712 SKLTNLLGLSNAKNLERLNLEGCTSLLKLPQEMENMKSLVFLNMRRCTSLTCLQSIKVSS 771

Query:   178 ISWLFLRGIA-IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL 236
             +  L L   + +EE     E L  L YLD +    +K LP +   L  L VL++ GC+ L
Sbjct:   772 LKILILSDCSKLEEFEVISENLEEL-YLDGT---AIKGLPPAAGDLTRLVVLNMEGCTEL 827

Query:   237 QRLPECLGQLSSPITFNLAK-TNIERIPESI 266
             + LP+ LG+  +     L+  + +E +P  +
Sbjct:   828 ESLPKRLGKQKALQELVLSGCSKLESVPTDV 858

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 298 (110.0 bits), Expect = 5.2e-25, P = 5.2e-25
 Identities = 83/276 (30%), Positives = 147/276 (53%)

Query:     1 GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKM----SYLQDPG 56
             GT+ +EG+ L++S++ E+  +   F  +  L+ L FY   F+GE +  +    SYL  P 
Sbjct:   523 GTQLVEGISLNLSEISEVFASDRAFEGLSNLKLLNFYDLSFDGETRVHLPNGLSYL--P- 579

Query:    57 FAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKL 116
               +++YL W GYPLK++PS    E L+ L + +S++++LWD ++    L ++  + C K 
Sbjct:   580 -RKLRYLRWDGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKKMDLSRC-KY 637

Query:   117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP-EISS 175
             + ++P+   + +   L  LNL   +SL  +   I NL+ L+   L+ C +LK +P  I  
Sbjct:   638 LVEVPD---LSKATNLEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIIL 694

Query:   176 GNISWLFLRGIA-IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS 234
              ++  + + G + ++  P       RL YL  +   +++ LPSS+ RL  L  L +  C 
Sbjct:   695 KSLETVGMSGCSSLKHFPEISWNTRRL-YLSST---KIEELPSSISRLSCLVKLDMSDCQ 750

Query:   235 NLQRLPECLGQLSSPITFNL-AKTNIERIPESIIQL 269
              L+ LP  LG L S  + NL     +E +P+++  L
Sbjct:   751 RLRTLPSYLGHLVSLKSLNLDGCRRLENLPDTLQNL 786

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 6.1e-25, P = 6.1e-25
 Identities = 84/252 (33%), Positives = 131/252 (51%)

Query:     1 GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSS-LFNG-ENKCKMSYLQDPGFA 58
             GT+KI G+ LD SK++ +  ++  F  M  L++LK Y S    G E + K+   +   F 
Sbjct:   537 GTDKIRGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFL 596

Query:    59 --EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKL 116
               E+ YLHWHGYPL+S+P +   + L+ L++P S ++ +WD  K    L  +     H +
Sbjct:   597 PNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWV--DLSHSI 654

Query:   117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE-ISS 175
                +     +   + L  LNL G  SLK LPS I  LE L  L+L  C+ L+ LP+ I +
Sbjct:   655 --NLRQCLGLANAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKT 712

Query:   176 GNISWLFLRGIA-IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS 234
              ++  L L G + +++ P   E +  L    L D   +KSLP S+   + L +L+L  C 
Sbjct:   713 QSLQTLILSGCSSLKKFPLISENVEVL----LLDGTVIKSLPESIQTFRRLALLNLKNCK 768

Query:   235 NLQRLPECLGQL 246
              L+ L   L +L
Sbjct:   769 KLKHLSSDLYKL 780

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 88/285 (30%), Positives = 141/285 (49%)

Query:     1 GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLF--NGENKCKMSY---LQDP 55
             G +K+ G+ LDMS+++E       F  M  LR+LK YSSL   + + +CK+     L+ P
Sbjct:   551 GRDKVRGIVLDMSEMEEKPLKRAVFVGMSSLRYLKVYSSLCPTHSKTECKLHLPDGLEFP 610

Query:    56 GFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHK 115
                 V+ LHW  +P   LP +     L+ L +P S+I  LW C K    L  +     H 
Sbjct:   611 KDNIVRCLHWVKFPGTELPPDFYPNNLIDLRLPYSNITTLWSCTKVAPNLKWV--DLSHS 668

Query:   116 LIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS 175
               + + +   +     L+ LNL G  SLK LP  + ++  L  L+L GC+ L  LP+I++
Sbjct:   669 --SNLNSLMGLSEAPNLLRLNLEGCTSLKELPDEMKDMTNLVFLNLRGCTSLLSLPKITT 726

Query:   176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSN 235
              ++  L L G +  +    I   L   YL+ ++   +  LP ++  L  L  L+L  C N
Sbjct:   727 NSLKTLILSGCSSFQTFEVISEHLESLYLNGTE---INGLPPAIGNLHRLIFLNLKDCKN 783

Query:   236 LQRLPECLGQLSSPITFNLAK-TNIERIP------ESIIQLFVSG 273
             L  LP+CLG+L S     L++ + ++  P      ES++ L + G
Sbjct:   784 LATLPDCLGELKSLQELKLSRCSKLKIFPDVTAKMESLLVLLLDG 828

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 89/273 (32%), Positives = 137/273 (50%)

Query:     1 GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAE- 59
             GTE ++G+  D S ++E+      F  M  L+FL+ Y   FN E   ++   +D  +   
Sbjct:   525 GTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIP--EDMEYIPP 582

Query:    60 VKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAK 119
             V+ LHW  YP KSLP   + E L+ + +P S +K+LW  ++    L  I  +  + L  +
Sbjct:   583 VRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSL-KE 641

Query:   120 IPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP-EISSGNI 178
             IPN   + +   L  L+L   KSL  LP  I NL  L  L++  CS LK +P  I+  ++
Sbjct:   642 IPN---LSKATNLEILSLEFCKSLVELPFSILNLHKLEILNVENCSMLKVIPTNINLASL 698

Query:   179 SWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR 238
               L + G +  EL +  +    +  L+L D   ++ +P S+     L  L + G  +L+R
Sbjct:   699 ERLDMTGCS--ELRTFPDISSNIKKLNLGDTM-IEDVPPSVGCWSRLDHLYI-GSRSLKR 754

Query:   239 L--PECLGQLSSPITFNLAKTNIERIPESIIQL 269
             L  P C+  L       L K+NIE IPESII L
Sbjct:   755 LHVPPCITSLV------LWKSNIESIPESIIGL 781

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01250017 tir-nbs-lrr resistance protein (1125 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	312
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-29
PLN03210	1153	PLN03210, PLN03210, Resistant to P	7e-24
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  118 bits (298), Expect = 1e-29
 Identities = 89/272 (32%), Positives = 132/272 (48%), Gaps = 63/272 (23%)

Query: 1   GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF--- 57
           GT+K+ G+ LD+ ++ ELH + N F  M  L FLKFY+  +  + K ++ +    GF   
Sbjct: 530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKW--DQKKEVRWHLPEGFDYL 587

Query: 58  -AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKL 116
             +++ L W  YPL+ +PSN   E L+ L++  S +++LWD V                 
Sbjct: 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVH---------------- 631

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP--SGIFNLEFLTKLDLSGCSKLKRLPEIS 174
                       L  L  ++LRGSK+LK +P  S   NLE    L LS CS L       
Sbjct: 632 -----------SLTGLRNIDLRGSKNLKEIPDLSMATNLE---TLKLSDCSSLV------ 671

Query: 175 SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS 234
                          ELPSSI+ L +L  LD+S C+ L+ LP+ +  LKSL  L+L GCS
Sbjct: 672 ---------------ELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715

Query: 235 NLQRLPECLGQLSSPITFNLAKTNIERIPESI 266
            L+  P+    +S     +L +T IE  P ++
Sbjct: 716 RLKSFPDISTNIS---WLDLDETAIEEFPSNL 744

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  101 bits (253), Expect = 7e-24
 Identities = 61/182 (33%), Positives = 102/182 (56%), Gaps = 7/182 (3%)

Query: 60  VKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKL-IA 118
           + +L      ++  PSNL  E L  L + +   ++LW+ V+  + L  ++  +  +L ++
Sbjct: 727 ISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLS 786

Query: 119 KIPN----PTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS 174
            IP+    P+ +  L+KL  L +    +L++LP+GI NLE L  LDLSGCS+L+  P+IS
Sbjct: 787 DIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS 845

Query: 175 SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS 234
           + NIS L L    IEE+P  IE+   L +LD++ C  L+ +  ++ +LK L  +    C 
Sbjct: 846 T-NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904

Query: 235 NL 236
            L
Sbjct: 905 AL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 3e-05
 Identities = 44/143 (30%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSG--CSKLKRLPEISSGNISWLFL 183
           +  L  L +L+L     L+S  S +  L  LT LDL     + +  L  +   N+  L L
Sbjct: 89  LLNLLPLPSLDL-NLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDL 147

Query: 184 RGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL 243
               IE LPS +  L  L  LDLS    L  LP  L  L +L  L L G + +  LP  +
Sbjct: 148 SDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEI 205

Query: 244 GQLSSPITFNLAKTNIERIPESI 266
             LS+    +L+  +I  +  S+
Sbjct: 206 ELLSALEELDLSNNSIIELLSSL 228

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 31/80 (38%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 165 SKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKS 224
           SKL+ L  I   N+S   +RG     +P S+  +  L  LDLS      S+P SL +L S
Sbjct: 439 SKLRHLQSI---NLSGNSIRG----NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 225 LGVLSLCGCSNLQRLPECLG 244
           L +L+L G S   R+P  LG
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	312
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.85
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.83
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.81
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.68
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.65
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.63
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.56
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.49
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.48
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.25
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.08
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.03
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.96
PLN03150	623	hypothetical protein; Provisional	98.95
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.93
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.91
PLN03150	623	hypothetical protein; Provisional	98.77
KOG4341	483	consensus F-box protein containing LRR [General fu	98.73
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.59
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.52
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.51
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.46
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.42
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.35
PRK15386	426	type III secretion protein GogB; Provisional	98.29
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.25
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.23
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.05
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.02
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.01
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.01
PRK15386	426	type III secretion protein GogB; Provisional	97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.91
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.7
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.62
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.61
KOG4341	483	consensus F-box protein containing LRR [General fu	97.55
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.22
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.83
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.59
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.56
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.92
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.7
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.31
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.07
smart00370	26	LRR Leucine-rich repeats, outliers.	92.6
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.6
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	91.57
KOG4308	478	consensus LRR-containing protein [Function unknown	90.45
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	87.14
KOG3864	221	consensus Uncharacterized conserved protein [Funct	84.74
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.2
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	80.78

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=5.3e-25  Score=217.72  Aligned_cols=271  Identities=18%  Similarity=0.213  Sum_probs=140.0

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCC-C-CCccEEeeCCCCCCCCCCccCcC
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPG-F-AEVKYLHWHGYPLKSLPSNLSAE   80 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~~~~~~~~~~l~   80 (312)
                      .+++.+++..++.  .+.....|..+++|++|++++|.+.      ...+..+. . .+|++|++++|.+....+...++
T Consensus        69 ~~v~~L~L~~~~i--~~~~~~~~~~l~~L~~L~Ls~n~~~------~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~  140 (968)
T PLN00113         69 SRVVSIDLSGKNI--SGKISSAIFRLPYIQTINLSNNQLS------GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIP  140 (968)
T ss_pred             CcEEEEEecCCCc--cccCChHHhCCCCCCEEECCCCccC------CcCChHHhccCCCCCEEECcCCccccccCccccC
Confidence            3566666554433  2233567888999999999887652      22333332 2 66777777776654322223455


Q ss_pred             CccEEeCCCCccc-chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEE
Q 047461           81 KLMLLEVPDSDIK-RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKL  159 (312)
Q Consensus        81 ~L~~L~l~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  159 (312)
                      +|++|++++|.+. .+|..+..+++|+.|...... +...+|.  .++.+++|++|++++|.+.+.+|..+..+++|++|
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  217 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV-LVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI  217 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCc-ccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence            6666666666655 345555666666633332210 1122333  45555555555555555545555555555555555


Q ss_pred             eccCCCCCCCCCccc--cCCCCeEEcCCcccc-cchHHHHh------------------------cCCCCEEecCCCCCC
Q 047461          160 DLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-ELPSSIER------------------------LLRLGYLDLSDCKRL  212 (312)
Q Consensus       160 ~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~~~~------------------------l~~L~~L~l~~n~~~  212 (312)
                      ++++|...+.+|...  .++|+.|++++|.++ .+|..++.                        +++|++|++++|.+.
T Consensus       218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~  297 (968)
T PLN00113        218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS  297 (968)
T ss_pred             ECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence            555544333333221  234455555544443 23444444                        444555555444444


Q ss_pred             CcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCc
Q 047461          213 KSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       213 ~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+.+
T Consensus       298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~  370 (968)
T PLN00113        298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG  370 (968)
T ss_pred             cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence            444444444555555555554444445555555555555555555554 444455555555555555555443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=9.6e-25  Score=215.88  Aligned_cols=252  Identities=22%  Similarity=0.254  Sum_probs=117.9

Q ss_pred             chhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCC-CCCCcc-CcCCccEEeCCCCccc-chhhh
Q 047461           23 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLK-SLPSNL-SAEKLMLLEVPDSDIK-RLWDC   98 (312)
Q Consensus        23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~-~~~~~   98 (312)
                      ..++.+++|++|++++|.+      ....+..+.. ++|++|++++|.+. .+|..+ .+++|++|++++|.+. .+|..
T Consensus       158 ~~~~~l~~L~~L~L~~n~l------~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  231 (968)
T PLN00113        158 NDIGSFSSLKVLDLGGNVL------VGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE  231 (968)
T ss_pred             hHHhcCCCCCEEECccCcc------cccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh
Confidence            3455555555555555442      1122333333 55555555555432 223322 4555555555555544 34444


Q ss_pred             cccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cC
Q 047461           99 VKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SG  176 (312)
Q Consensus        99 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~  176 (312)
                      +..+++|+.|....+. ....+|.  .++.+++|++|++++|.+.+.+|..+..+++|++|++++|...+.+|...  .+
T Consensus       232 l~~l~~L~~L~L~~n~-l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  308 (968)
T PLN00113        232 IGGLTSLNHLDLVYNN-LTGPIPS--SLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ  308 (968)
T ss_pred             HhcCCCCCEEECcCce-eccccCh--hHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence            5555555533222211 1122333  45555555555555555444555555555555555555544333333321  24


Q ss_pred             CCCeEEcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461          177 NISWLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA  255 (312)
Q Consensus       177 ~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  255 (312)
                      +|+.|++.+|.++ .+|..+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|+++
T Consensus       309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  388 (968)
T PLN00113        309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF  388 (968)
T ss_pred             CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence            4555555555444 234444455555555555555555555555555555555555554444444444444444444444


Q ss_pred             CCCCc-ccchHhhccCCCcEEEecCCcCC
Q 047461          256 KTNIE-RIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       256 ~n~l~-~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                      +|.+. .+|..+..+++|+.|++++|.+.
T Consensus       389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~  417 (968)
T PLN00113        389 SNSLEGEIPKSLGACRSLRRVRLQDNSFS  417 (968)
T ss_pred             CCEecccCCHHHhCCCCCCEEECcCCEee
Confidence            44443 33444444444444444444443

>PLN03210 Resistant to P

Probab=99.91  E-value=2.5e-23  Score=207.10  Aligned_cols=281  Identities=34%  Similarity=0.528  Sum_probs=184.8

Q ss_pred             CCcceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC--CCccEEeeCCCCCCCCCCccC
Q 047461            1 GTEKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF--AEVKYLHWHGYPLKSLPSNLS   78 (312)
Q Consensus         1 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~   78 (312)
                      |+.++++|.++++..........+|.+|++|+.|.++.+...........++.++..  .+|+.|++.++.++.+|..+.
T Consensus       530 g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~  609 (1153)
T PLN03210        530 GTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFR  609 (1153)
T ss_pred             ccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCC
Confidence            677899999999888777888899999999999999875432222233456666666  679999999999999998888


Q ss_pred             cCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcE
Q 047461           79 AEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTK  158 (312)
Q Consensus        79 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  158 (312)
                      +.+|+.|++.++.+..+|.++..+++|+.+....+.. ...+|   .++.+++|++|++++|.....+|..+..+++|+.
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~-l~~ip---~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~  685 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKN-LKEIP---DLSMATNLETLKLSDCSSLVELPSSIQYLNKLED  685 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCC-cCcCC---ccccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence            8899999999999988888877888888544433221 22232   2444555666666555545555555555555555


Q ss_pred             EeccCCCCCCCCCccc----------------------cCCCCeEEcCCcccccchHHH---------------------
Q 047461          159 LDLSGCSKLKRLPEIS----------------------SGNISWLFLRGIAIEELPSSI---------------------  195 (312)
Q Consensus       159 L~l~~~~~l~~~p~~~----------------------~~~L~~L~l~~~~l~~l~~~~---------------------  195 (312)
                      |++++|..+..+|...                      ..+|+.|++.++.++.+|..+                     
T Consensus       686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        686 LDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             EeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence            5555544443333211                      134555555555555444321                     


Q ss_pred             ---------HhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhh--------------------hCC
Q 047461          196 ---------ERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL--------------------GQL  246 (312)
Q Consensus       196 ---------~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~--------------------~~l  246 (312)
                               ...++|+.|++++|.....+|.+++++++|+.|++++|...+.+|...                    ...
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~  845 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDIS  845 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccc
Confidence                     012356666666666666666667777777777777665555554332                    012


Q ss_pred             CCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461          247 SSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       247 ~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      .+|+.|++++|.++.+|..+..+++|+.|++++|.-...
T Consensus       846 ~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~  884 (1153)
T PLN03210        846 TNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQR  884 (1153)
T ss_pred             cccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCc
Confidence            456677777777788888888999999999999755443

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.90  E-value=2.5e-24  Score=188.45  Aligned_cols=270  Identities=21%  Similarity=0.208  Sum_probs=190.0

Q ss_pred             eEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcCC
Q 047461            5 IEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAEK   81 (312)
Q Consensus         5 i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~   81 (312)
                      ++.++|..+...  .+..+++.-++-||.||++.|.++..     .. ..+.. .++++|++++|+++.+....  .+.+
T Consensus       127 l~~L~L~~N~I~--sv~se~L~~l~alrslDLSrN~is~i-----~~-~sfp~~~ni~~L~La~N~It~l~~~~F~~lns  198 (873)
T KOG4194|consen  127 LEKLDLRHNLIS--SVTSEELSALPALRSLDLSRNLISEI-----PK-PSFPAKVNIKKLNLASNRITTLETGHFDSLNS  198 (873)
T ss_pred             eeEEeeeccccc--cccHHHHHhHhhhhhhhhhhchhhcc-----cC-CCCCCCCCceEEeeccccccccccccccccch
Confidence            444554444332  22336666677777788877765222     21 22223 78999999999988876543  6778


Q ss_pred             ccEEeCCCCcccchhhh-cccCCCch--hcchhhcccc--------------------cccCCCCCCcCCCcCCcEEEcC
Q 047461           82 LMLLEVPDSDIKRLWDC-VKHYSKLN--QIIHAACHKL--------------------IAKIPNPTLMPRLNKLVTLNLR  138 (312)
Q Consensus        82 L~~L~l~~~~~~~~~~~-~~~l~~L~--~l~~~~~~~~--------------------~~~~~~~~~~~~l~~L~~L~l~  138 (312)
                      |..|.+++|+++.+|.. |+.+++|+  +|..+.+...                    +..+.. ..|..+.++++|++.
T Consensus       199 L~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D-G~Fy~l~kme~l~L~  277 (873)
T KOG4194|consen  199 LLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD-GAFYGLEKMEHLNLE  277 (873)
T ss_pred             heeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC-cceeeecccceeecc
Confidence            88899999999888854 55688888  4444442211                    111111 144556677777777


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCc--cc-cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCc
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE--IS-SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKS  214 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~--~~-~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~  214 (312)
                      .|++...-..++.++++|+.|+++.| .+..+..  +. .++|++|++++|.+++++. .+..++.|++|.|++|++.-.
T Consensus       278 ~N~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l  356 (873)
T KOG4194|consen  278 TNRLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHL  356 (873)
T ss_pred             cchhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHH
Confidence            77755444556778888888888884 4443332  22 5789999999999998875 577788899999999887665


Q ss_pred             CchhhhcCCCCCeEeccCCCCCCc---chhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCCc
Q 047461          215 LPSSLYRLKSLGVLSLCGCSNLQR---LPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       215 ~~~~l~~l~~L~~L~l~~~~~~~~---~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      ....|..+.+|++|++++|.+...   -...|.++++|+.|++.+|+++.+| .++.+++.|+.|+|.+|.+..
T Consensus       357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaS  430 (873)
T KOG4194|consen  357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIAS  430 (873)
T ss_pred             HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCccee
Confidence            566788889999999999887643   3456778999999999999999877 478899999999999998854

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=3.3e-23  Score=181.53  Aligned_cols=255  Identities=18%  Similarity=0.148  Sum_probs=182.0

Q ss_pred             CCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccch
Q 047461           19 HPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRL   95 (312)
Q Consensus        19 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~   95 (312)
                      .....+|.+-.++++|++++|.++..+      ...+.. .+|..|.++.|+++.+|...  .+++|+.|++..|.+...
T Consensus       163 ~i~~~sfp~~~ni~~L~La~N~It~l~------~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  163 EIPKPSFPAKVNIKKLNLASNRITTLE------TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             cccCCCCCCCCCceEEeeccccccccc------cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence            334466766678888888887652221      122223 56777778888877777543  477777777777776644


Q ss_pred             -hhhcccCCCchh--cchhhcccc--------------------cccCCCCCCcCCCcCCcEEEcCCCCcCccccccccC
Q 047461           96 -WDCVKHYSKLNQ--IIHAACHKL--------------------IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN  152 (312)
Q Consensus        96 -~~~~~~l~~L~~--l~~~~~~~~--------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  152 (312)
                       +..|.++++|+.  +..+.+..+                    +..+.. -++-++++|+.|++++|.+...-++..+.
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~-g~lfgLt~L~~L~lS~NaI~rih~d~Wsf  315 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNE-GWLFGLTSLEQLDLSYNAIQRIHIDSWSF  315 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhc-ccccccchhhhhccchhhhheeecchhhh
Confidence             334555555552  222222221                    111111 14567899999999999976666777878


Q ss_pred             CCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCc---CchhhhcCCCC
Q 047461          153 LEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKS---LPSSLYRLKSL  225 (312)
Q Consensus       153 ~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L  225 (312)
                      .++|+.|+++. +.+..++..+   ...|++|.++.|.+..+.. .+.++++|+.|||+.|.+.+.   ....+..+++|
T Consensus       316 tqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L  394 (873)
T KOG4194|consen  316 TQKLKELDLSS-NRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL  394 (873)
T ss_pred             cccceeEeccc-cccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence            89999999999 5566666554   4689999999999998875 477899999999999987653   33467789999


Q ss_pred             CeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcC
Q 047461          226 GVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       226 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      +.|++.+|++..---..|.+++.|++||+.+|.|. .-|.++..+ .|++|.+..-.+
T Consensus       395 rkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  395 RKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSF  451 (873)
T ss_pred             hheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccce
Confidence            99999998876555568999999999999999998 456677776 888887665433

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.85  E-value=1.4e-23  Score=185.42  Aligned_cols=221  Identities=24%  Similarity=0.318  Sum_probs=123.4

Q ss_pred             CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccchhhhc-ccCCCch--hcchhhcccccccCCCCCCcCCCcCCc
Q 047461           58 AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLWDCV-KHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLV  133 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~-~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~  133 (312)
                      ..|..|+++.|.++.+|... .-+++-+|++++|+|..+|..+ ..+..|-  +|+.+.    ++.+|+  .+..+..|+
T Consensus       103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr----Le~LPP--Q~RRL~~Lq  176 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR----LEMLPP--QIRRLSMLQ  176 (1255)
T ss_pred             ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch----hhhcCH--HHHHHhhhh
Confidence            45555555555555555443 3445555555555555555432 2333332  344444    334444  444555555


Q ss_pred             EEEcCCCCcC-------------------------ccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCc
Q 047461          134 TLNLRGSKSL-------------------------KSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGI  186 (312)
Q Consensus       134 ~L~l~~~~~~-------------------------~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~  186 (312)
                      +|.+++|.+.                         ..+|..+..+.+|..+|+++|+ +...|..-  ..+|+.|++++|
T Consensus       177 tL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  177 TLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGN  255 (1255)
T ss_pred             hhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcC
Confidence            5555555321                         1244445555555555555532 33333222  345566666666


Q ss_pred             ccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC-CcchhhhhCCCCCcEEeccCCCCcccchH
Q 047461          187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL-QRLPECLGQLSSPITFNLAKTNIERIPES  265 (312)
Q Consensus       187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~n~l~~~~~~  265 (312)
                      .++++.-..+...+|+.|+++.|+ ...+|..+..++.|+.|.+.+|.+. ..+|..++++.+|+.+..++|.+.-+|+.
T Consensus       256 ~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEg  334 (1255)
T KOG0444|consen  256 KITELNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEG  334 (1255)
T ss_pred             ceeeeeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchh
Confidence            666555555555556666666654 3456777777777777777666553 45677777777777777777777767777


Q ss_pred             hhccCCCcEEEecCCcCCccc
Q 047461          266 IIQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       266 l~~~~~L~~L~l~~n~~~~~~  286 (312)
                      +..|.+|+.|.|+.|.+..-+
T Consensus       335 lcRC~kL~kL~L~~NrLiTLP  355 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRLITLP  355 (1255)
T ss_pred             hhhhHHHHHhcccccceeech
Confidence            777777777777777665533

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.83  E-value=2.7e-22  Score=177.46  Aligned_cols=266  Identities=19%  Similarity=0.264  Sum_probs=208.4

Q ss_pred             EEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcCCc
Q 047461            6 EGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAEKL   82 (312)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~L   82 (312)
                      +.+.++-++....+++ ..+.+++.|..|++++|.+       ...|..+.. .++-.|++++|.+.++|...  ++.+|
T Consensus        81 Rsv~~R~N~LKnsGiP-~diF~l~dLt~lDLShNqL-------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL  152 (1255)
T KOG0444|consen   81 RSVIVRDNNLKNSGIP-TDIFRLKDLTILDLSHNQL-------REVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL  152 (1255)
T ss_pred             HHHhhhccccccCCCC-chhcccccceeeecchhhh-------hhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence            3444444555444443 4555888899999998764       445666666 77888889998888888744  78888


Q ss_pred             cEEeCCCCcccchhhhcccCCCch--hcchhh----------------------cccccccCCCCCCcCCCcCCcEEEcC
Q 047461           83 MLLEVPDSDIKRLWDCVKHYSKLN--QIIHAA----------------------CHKLIAKIPNPTLMPRLNKLVTLNLR  138 (312)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~----------------------~~~~~~~~~~~~~~~~l~~L~~L~l~  138 (312)
                      -.|++++|.+..+|.-...+.+|+  +|+.+.                      .......+|.  ++..+.+|..++++
T Consensus       153 LfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt--sld~l~NL~dvDlS  230 (1255)
T KOG0444|consen  153 LFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT--SLDDLHNLRDVDLS  230 (1255)
T ss_pred             hhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCC--chhhhhhhhhcccc
Confidence            888888888887776555555555  233222                      1111334454  88889999999999


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCC-cC
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLK-SL  215 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~-~~  215 (312)
                      .|. +..+|..+.++++|+.|++++|. +..+....  -.+++.|+++.|+++.+|..+-.+++|+.|.+.+|++.. -+
T Consensus       231 ~N~-Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGi  308 (1255)
T KOG0444|consen  231 ENN-LPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGI  308 (1255)
T ss_pred             ccC-CCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCC
Confidence            998 78889988899999999999954 44333221  258999999999999999999999999999999988755 48


Q ss_pred             chhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          216 PSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       216 ~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      |..++.+..|+.+...+| ...-+|+.++++..|+.|.++.|++..+|++|.-++.|+.|++..|+-..
T Consensus       309 PSGIGKL~~Levf~aanN-~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  309 PSGIGKLIQLEVFHAANN-KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             ccchhhhhhhHHHHhhcc-ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence            889999999999999874 56889999999999999999999999999999999999999999997643

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.81  E-value=2e-21  Score=163.51  Aligned_cols=237  Identities=22%  Similarity=0.288  Sum_probs=140.6

Q ss_pred             CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCc
Q 047461           58 AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLV  133 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~  133 (312)
                      ..|++++++.|.+..+|+..  .+..+.+||++.|.++..|+.++.+.+|+  +++.+.    +..+|.  .+|++ .|+
T Consensus       228 s~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~----is~Lp~--sLgnl-hL~  300 (565)
T KOG0472|consen  228 SLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND----ISSLPY--SLGNL-HLK  300 (565)
T ss_pred             HHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc----cccCCc--ccccc-eee
Confidence            45555565555555555433  56666666777777776666666666666  555554    444555  66666 666


Q ss_pred             EEEcCCCCcCc-------------------------------------cccc----cccCCCcCcEEeccCCCCCCCCCc
Q 047461          134 TLNLRGSKSLK-------------------------------------SLPS----GIFNLEFLTKLDLSGCSKLKRLPE  172 (312)
Q Consensus       134 ~L~l~~~~~~~-------------------------------------~~~~----~l~~~~~L~~L~l~~~~~l~~~p~  172 (312)
                      .|.+.+|.+.+                                     ..+.    ....+.+.+.|+++. ..+...|.
T Consensus       301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPd  379 (565)
T KOG0472|consen  301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPD  379 (565)
T ss_pred             ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCH
Confidence            66666664210                                     0000    011122333444433 22222332


Q ss_pred             cc-----cCCCCeEEcCCcccccch------------------------HHHHhcCCCCEEecCCCCCCCcCchhhhcCC
Q 047461          173 IS-----SGNISWLFLRGIAIEELP------------------------SSIERLLRLGYLDLSDCKRLKSLPSSLYRLK  223 (312)
Q Consensus       173 ~~-----~~~L~~L~l~~~~l~~l~------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~  223 (312)
                      .-     ..-+..++++.|++.++|                        ..+..+++|..|++++| ...++|..++.+.
T Consensus       380 EVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv  458 (565)
T KOG0472|consen  380 EVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLV  458 (565)
T ss_pred             HHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhh
Confidence            11     011445555555555433                        22455667777777764 3556677777777


Q ss_pred             CCCeEeccCCCCC----------------------Ccc-hhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCC
Q 047461          224 SLGVLSLCGCSNL----------------------QRL-PECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYG  280 (312)
Q Consensus       224 ~L~~L~l~~~~~~----------------------~~~-p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n  280 (312)
                      .|+.++++.|++.                      +.+ |+.+.++.+|..||+.+|.+..+|+.++++.+|+.|++.+|
T Consensus       459 ~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  459 RLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGN  538 (565)
T ss_pred             hhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCC
Confidence            7777777766431                      222 34477889999999999999999999999999999999999


Q ss_pred             cCCccccccccCCCCchhHHHhhhc
Q 047461          281 IVEDTLRIQHTNHTPAVRWQEIWQE  305 (312)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~  305 (312)
                      ++......  +-..+...+..+.++
T Consensus       539 pfr~Pr~~--iLmkgT~aiL~ylrd  561 (565)
T KOG0472|consen  539 PFRQPRHQ--ILMKGTAAILSYLRD  561 (565)
T ss_pred             ccCCCHHH--HhccChHHHHHHhcc
Confidence            99843322  234556666555433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.75  E-value=1.6e-21  Score=164.08  Aligned_cols=245  Identities=26%  Similarity=0.345  Sum_probs=174.6

Q ss_pred             chhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccchhhhcc
Q 047461           23 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLWDCVK  100 (312)
Q Consensus        23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~  100 (312)
                      ..+.++..+.+|.+.++..       ...|..++. ..++.++++.+.+..+|+.. .+..+..++.++|.+..+++.++
T Consensus        62 ~dl~nL~~l~vl~~~~n~l-------~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~  134 (565)
T KOG0472|consen   62 EDLKNLACLTVLNVHDNKL-------SQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIG  134 (565)
T ss_pred             HhhhcccceeEEEeccchh-------hhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHH
Confidence            4455566666666666542       445555555 66666666766666666554 66667777777777777777666


Q ss_pred             cCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCC
Q 047461          101 HYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNI  178 (312)
Q Consensus       101 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L  178 (312)
                      .+..++++....  +-+..+|.  .++.+.++..+++.+|. ...+|+..-+|+.|++++..+ +.++.+|+..  ..+|
T Consensus       135 ~~~~l~dl~~~~--N~i~slp~--~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L  208 (565)
T KOG0472|consen  135 RLLDLEDLDATN--NQISSLPE--DMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESL  208 (565)
T ss_pred             HHhhhhhhhccc--cccccCch--HHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhh
Confidence            666666433221  11445555  67777788888888877 555555555688888888877 5667677654  4677


Q ss_pred             CeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchh-hhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461          179 SWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSS-LYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT  257 (312)
Q Consensus       179 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n  257 (312)
                      .-|++..|++..+| .+++++.|+.|.++.|++ ..+|.. .+.+.++.+||+++|. .++.|+.++.+.+|++||+++|
T Consensus       209 ~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN  285 (565)
T KOG0472|consen  209 ELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNN  285 (565)
T ss_pred             HHHHhhhcccccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCC
Confidence            78888888888887 677788888888888764 444544 4478889999998864 5788899999999999999999


Q ss_pred             CCcccchHhhccCCCcEEEecCCcCCc
Q 047461          258 NIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       258 ~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      .|+.+|..++++ .|+.|.+.+|++..
T Consensus       286 ~is~Lp~sLgnl-hL~~L~leGNPlrT  311 (565)
T KOG0472|consen  286 DISSLPYSLGNL-HLKFLALEGNPLRT  311 (565)
T ss_pred             ccccCCcccccc-eeeehhhcCCchHH
Confidence            999999989988 89999999998843

>PLN03210 Resistant to P

Probab=99.72  E-value=5.1e-16  Score=155.15  Aligned_cols=218  Identities=28%  Similarity=0.449  Sum_probs=128.2

Q ss_pred             CCccEEeeCCCC-CCCCCCccCcCCccEEeCCCCc-ccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461           58 AEVKYLHWHGYP-LKSLPSNLSAEKLMLLEVPDSD-IKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL  135 (312)
Q Consensus        58 ~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  135 (312)
                      ++|++++++++. +..+|....+++|+.|++++|. +..+|..+..+++|+.|....|.. ...+|.  .+ .+++|++|
T Consensus       634 ~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~-L~~Lp~--~i-~l~sL~~L  709 (1153)
T PLN03210        634 TGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN-LEILPT--GI-NLKSLYRL  709 (1153)
T ss_pred             CCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC-cCccCC--cC-CCCCCCEE
Confidence            455555555433 3444443345555555555542 334455555555555444333322 223332  22 34455555


Q ss_pred             EcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--------------------------------ccCCCCeEEc
Q 047461          136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--------------------------------SSGNISWLFL  183 (312)
Q Consensus       136 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--------------------------------~~~~L~~L~l  183 (312)
                      ++++|...+.+|.   ..++|+.|+++++. +..+|..                                ..+.|+.|++
T Consensus       710 ~Lsgc~~L~~~p~---~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~L  785 (1153)
T PLN03210        710 NLSGCSRLKSFPD---ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFL  785 (1153)
T ss_pred             eCCCCCCcccccc---ccCCcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeC
Confidence            5555443333332   12334444444422 2222211                                0246777777


Q ss_pred             CCc-ccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC--------------------Ccchhh
Q 047461          184 RGI-AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL--------------------QRLPEC  242 (312)
Q Consensus       184 ~~~-~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~--------------------~~~p~~  242 (312)
                      ++| .+..+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|...                    ..+|.+
T Consensus       786 s~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~s  864 (1153)
T PLN03210        786 SDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWW  864 (1153)
T ss_pred             CCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHH
Confidence            776 455688888888888888888887666666543 5566666666665332                    356778


Q ss_pred             hhCCCCCcEEeccCC-CCcccchHhhccCCCcEEEecCCcCCc
Q 047461          243 LGQLSSPITFNLAKT-NIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       243 ~~~l~~L~~L~l~~n-~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +..+++|+.|++++| .++.+|..+..+++|+.+++++|.-..
T Consensus       865 i~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence            889999999999995 477888888899999999999996543

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.71  E-value=1.2e-16  Score=150.12  Aligned_cols=222  Identities=22%  Similarity=0.216  Sum_probs=140.2

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhc
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI  108 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l  108 (312)
                      ++|+.|.+.+|.+.       .++..  .++|++|++++|.+..+|..  +++|+.|++.+|.+..+|.....+..| .+
T Consensus       222 ~~L~~L~L~~N~Lt-------~LP~l--p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~L~~Lp~lp~~L~~L-~L  289 (788)
T PRK15387        222 AHITTLVIPDNNLT-------SLPAL--PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNPLTHLPALPSGLCKL-WI  289 (788)
T ss_pred             cCCCEEEccCCcCC-------CCCCC--CCCCcEEEecCCccCcccCc--ccccceeeccCCchhhhhhchhhcCEE-EC
Confidence            37888888887652       12211  16788888888888877753  457777788777777665432222211 22


Q ss_pred             chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccccccc-----------------CCCcCcEEeccCCCCCCCCC
Q 047461          109 IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-----------------NLEFLTKLDLSGCSKLKRLP  171 (312)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-----------------~~~~L~~L~l~~~~~l~~~p  171 (312)
                      +.+.    +..+|.     ..++|+.|++++|.+. .+|....                 ...+|++|++++| .+..+|
T Consensus       290 s~N~----Lt~LP~-----~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N-~Ls~LP  358 (788)
T PRK15387        290 FGNQ----LTSLPV-----LPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDN-QLASLP  358 (788)
T ss_pred             cCCc----cccccc-----cccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCC-ccCCCC
Confidence            2222    222221     1235666666666532 2222100                 1135666677663 344455


Q ss_pred             ccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcE
Q 047461          172 EISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPIT  251 (312)
Q Consensus       172 ~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~  251 (312)
                      ... .+++.|++.+|.++.+|..   ..+|+.|++++|++.+ +|..   .++|+.|++++|.+. .+|..+   .+|+.
T Consensus       359 ~lp-~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l~---~~L~~  426 (788)
T PRK15387        359 TLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPMLP---SGLLS  426 (788)
T ss_pred             CCC-cccceehhhccccccCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcch---hhhhh
Confidence            433 5666677777776666643   2468888888887653 5542   357889999988765 466543   46788


Q ss_pred             EeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461          252 FNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       252 L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      |++++|.++.+|..+..+++|+.|++++|++.+.
T Consensus       427 L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        427 LSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence            9999999999999999999999999999999764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.69  E-value=2e-16  Score=149.20  Aligned_cols=224  Identities=23%  Similarity=0.333  Sum_probs=162.5

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchh-
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQ-  107 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~-  107 (312)
                      ++|+.|++++|.+.       .++..+. .+|++|++++|.+..+|..+ ...|+.|++++|.+..+|..+.  .+|+. 
T Consensus       199 ~~L~~L~Ls~N~Lt-------sLP~~l~-~nL~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L  267 (754)
T PRK15370        199 EQITTLILDNNELK-------SLPENLQ-GNIKTLYANSNQLTSIPATL-PDTIQEMELSINRITELPERLP--SALQSL  267 (754)
T ss_pred             cCCcEEEecCCCCC-------cCChhhc-cCCCEEECCCCccccCChhh-hccccEEECcCCccCcCChhHh--CCCCEE
Confidence            47888999887652       2232222 68999999999888887643 3478899999999888876543  35663 


Q ss_pred             -cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461          108 -IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI  186 (312)
Q Consensus       108 -l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~  186 (312)
                       ++.+.    +..+|.  .+.  ++|+.|++++|. ...+|..+  .++|+.|++++|. +..+|....++|+.|++.+|
T Consensus       268 ~Ls~N~----L~~LP~--~l~--~sL~~L~Ls~N~-Lt~LP~~l--p~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        268 DLFHNK----ISCLPE--NLP--EELRYLSVYDNS-IRTLPAHL--PSGITHLNVQSNS-LTALPETLPPGLKTLEAGEN  335 (754)
T ss_pred             ECcCCc----cCcccc--ccC--CCCcEEECCCCc-cccCcccc--hhhHHHHHhcCCc-cccCCccccccceeccccCC
Confidence             44333    334443  443  479999999987 44566543  2578889999854 55566544578999999999


Q ss_pred             ccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHh
Q 047461          187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESI  266 (312)
Q Consensus       187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l  266 (312)
                      .++.+|..+.  ++|+.|++++|++. .+|..+  .++|+.|++++|.+. .+|..+.  ..|+.|++++|.++.+|..+
T Consensus       336 ~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~~LP~sl  407 (754)
T PRK15370        336 ALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLVRLPESL  407 (754)
T ss_pred             ccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcccCchhH
Confidence            9999887653  68999999999865 466654  368999999998765 5666654  46899999999999777654


Q ss_pred             h----ccCCCcEEEecCCcCC
Q 047461          267 I----QLFVSGYLLLSYGIVE  283 (312)
Q Consensus       267 ~----~~~~L~~L~l~~n~~~  283 (312)
                      .    .++.+..+++.+|++.
T Consensus       408 ~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        408 PHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhcCCCccEEEeeCCCcc
Confidence            3    4588899999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.68  E-value=2.6e-18  Score=158.10  Aligned_cols=217  Identities=24%  Similarity=0.317  Sum_probs=120.7

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccc-------------------
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKL-------------------  116 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~-------------------  116 (312)
                      ++++.|+.+.|.+..+...+...+|++++++++.+..+|+.++.+.+|+  ...++....+                   
T Consensus       219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne  298 (1081)
T KOG0618|consen  219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNE  298 (1081)
T ss_pred             cchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh
Confidence            5566666666665544444455566677777777666666666666666  2333321111                   


Q ss_pred             cccCCCCCCcCCCcCCcEEEcCCCCcCccccccccC--------------------------CCcCcEEeccCCCCCC-C
Q 047461          117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN--------------------------LEFLTKLDLSGCSKLK-R  169 (312)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--------------------------~~~L~~L~l~~~~~l~-~  169 (312)
                      ...++.  ..+.+..|++|++..|. +..+|+.+..                          ++.|+.|.+.+|.... .
T Consensus       299 l~yip~--~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c  375 (1081)
T KOG0618|consen  299 LEYIPP--FLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSC  375 (1081)
T ss_pred             hhhCCC--cccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccc
Confidence            233333  34445666666666655 3333321111                          1122233333322111 1


Q ss_pred             CCccc-cCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC
Q 047461          170 LPEIS-SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS  247 (312)
Q Consensus       170 ~p~~~-~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  247 (312)
                      +|... +.+|++|++++|.+..+|.. +..+..|+.|++++|++ +.+|..+..++.|++|...+|. ...+| .+..++
T Consensus       376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~  452 (1081)
T KOG0618|consen  376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLP  452 (1081)
T ss_pred             hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcC
Confidence            23222 35666777777766666643 45566666777777653 3455666666667776665543 34566 566778


Q ss_pred             CCcEEeccCCCCc--ccchHhhccCCCcEEEecCCc
Q 047461          248 SPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGI  281 (312)
Q Consensus       248 ~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~  281 (312)
                      .|+.+|++.|.++  .+|.... .++|++||+++|.
T Consensus       453 qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  453 QLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             cceEEecccchhhhhhhhhhCC-CcccceeeccCCc
Confidence            8888888888877  3444332 2788888888886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.65  E-value=9.7e-16  Score=144.63  Aligned_cols=223  Identities=20%  Similarity=0.269  Sum_probs=166.5

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch--
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN--  106 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--  106 (312)
                      .+...|+++++.+       ..+|..+. ..++.|++++|.+..+|.... .+|+.|++++|.++.+|..+.  ++|+  
T Consensus       178 ~~~~~L~L~~~~L-------tsLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L  246 (754)
T PRK15370        178 NNKTELRLKILGL-------TTIPACIP-EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEM  246 (754)
T ss_pred             cCceEEEeCCCCc-------CcCCcccc-cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEE
Confidence            3567788877543       22333222 579999999999998887543 589999999999998886543  3566  


Q ss_pred             hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461          107 QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI  186 (312)
Q Consensus       107 ~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~  186 (312)
                      +++.+.    +..+|.  .+.  .+|+.|++++|. +..+|..+.  ++|+.|++++| .+..+|......|+.|++++|
T Consensus       247 ~Ls~N~----L~~LP~--~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N  314 (754)
T PRK15370        247 ELSINR----ITELPE--RLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSN  314 (754)
T ss_pred             ECcCCc----cCcCCh--hHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCC-ccccCcccchhhHHHHHhcCC
Confidence            444444    334444  443  379999999988 446776553  58999999996 455666544467999999999


Q ss_pred             ccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHh
Q 047461          187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESI  266 (312)
Q Consensus       187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l  266 (312)
                      .++.+|..+.  ++|+.|++++|.+.+ +|..+.  ++|+.|++++|++. .+|..+  .++|+.|++++|.++.+|..+
T Consensus       315 ~Lt~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l  386 (754)
T PRK15370        315 SLTALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENL  386 (754)
T ss_pred             ccccCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhH
Confidence            9998886543  689999999998654 666553  68999999998764 577655  368999999999999999876


Q ss_pred             hccCCCcEEEecCCcCCc
Q 047461          267 IQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       267 ~~~~~L~~L~l~~n~~~~  284 (312)
                      .  ..|+.|++++|++.+
T Consensus       387 ~--~sL~~LdLs~N~L~~  402 (754)
T PRK15370        387 P--AALQIMQASRNNLVR  402 (754)
T ss_pred             H--HHHHHHhhccCCccc
Confidence            5  479999999999864

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.63  E-value=3.2e-18  Score=157.54  Aligned_cols=122  Identities=20%  Similarity=0.247  Sum_probs=69.6

Q ss_pred             CCeEEcCCccccc-chHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          178 ISWLFLRGIAIEE-LPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       178 L~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      |+.|++.+|.+++ .-+.+.++..|+.|+|++|++...-...+.++..|+.|++++|. ...+|+.+..+..|++|..-+
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcC
Confidence            4445555555542 11224455666666666666444333455666666666666644 355666666666666666666


Q ss_pred             CCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHh
Q 047461          257 TNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEI  302 (312)
Q Consensus       257 n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  302 (312)
                      |.+..+| .+.+++.|+.+|++.|.+......++.+- |.++.++.
T Consensus       440 N~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdl  483 (1081)
T KOG0618|consen  440 NQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDL  483 (1081)
T ss_pred             Cceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeec
Confidence            6666666 46667777777777777654443443332 44444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.63  E-value=3.3e-15  Score=140.48  Aligned_cols=154  Identities=23%  Similarity=0.236  Sum_probs=104.9

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhc
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI  108 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l  108 (312)
                      .+-..|+++++.+       ..+|..+. .+|+.|++.+|.++.+|.  .+++|++|++++|.++.+|..   .++|+.|
T Consensus       201 ~~~~~LdLs~~~L-------tsLP~~l~-~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L  267 (788)
T PRK15387        201 NGNAVLNVGESGL-------TTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLEL  267 (788)
T ss_pred             CCCcEEEcCCCCC-------CcCCcchh-cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---cccccee
Confidence            4466788888654       23444332 579999999999999886  468999999999999988753   3456643


Q ss_pred             --chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461          109 --IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI  186 (312)
Q Consensus       109 --~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~  186 (312)
                        +.+.    +..++.  .   ..+|+.|++++|. ...+|.   .+++|+.|++++| .+..+|... ..|+.|++.+|
T Consensus       268 ~Ls~N~----L~~Lp~--l---p~~L~~L~Ls~N~-Lt~LP~---~p~~L~~LdLS~N-~L~~Lp~lp-~~L~~L~Ls~N  332 (788)
T PRK15387        268 SIFSNP----LTHLPA--L---PSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDN-QLASLPALP-SELCKLWAYNN  332 (788)
T ss_pred             eccCCc----hhhhhh--c---hhhcCEEECcCCc-cccccc---cccccceeECCCC-ccccCCCCc-ccccccccccC
Confidence              3333    222332  1   2478999999998 556665   3578999999996 455555533 56777777777


Q ss_pred             ccccchHHHHhcCCCCEEecCCCCCCC
Q 047461          187 AIEELPSSIERLLRLGYLDLSDCKRLK  213 (312)
Q Consensus       187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~  213 (312)
                      .++.+|..   ..+|+.|++++|++.+
T Consensus       333 ~L~~LP~l---p~~Lq~LdLS~N~Ls~  356 (788)
T PRK15387        333 QLTSLPTL---PSGLQELSVSDNQLAS  356 (788)
T ss_pred             cccccccc---ccccceEecCCCccCC
Confidence            77766642   1367777777766543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.57  E-value=8.7e-17  Score=120.99  Aligned_cols=167  Identities=22%  Similarity=0.342  Sum_probs=107.0

Q ss_pred             CCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc
Q 047461           70 LKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP  147 (312)
Q Consensus        70 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  147 (312)
                      +..++..+.+.+++.|.+++|.++.+|..+..+.+|+  .+..+.    +.++|.  .+.++++|+.|++.-|+ ...+|
T Consensus        23 f~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq----ie~lp~--~issl~klr~lnvgmnr-l~~lp   95 (264)
T KOG0617|consen   23 FEELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ----IEELPT--SISSLPKLRILNVGMNR-LNILP   95 (264)
T ss_pred             HhhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch----hhhcCh--hhhhchhhhheecchhh-hhcCc
Confidence            3355666677788888888888888887777888877  344444    556666  78888888888888877 67778


Q ss_pred             ccccCCCcCcEEeccCCCCCC-CCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCC
Q 047461          148 SGIFNLEFLTKLDLSGCSKLK-RLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKS  224 (312)
Q Consensus       148 ~~l~~~~~L~~L~l~~~~~l~-~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  224 (312)
                      ..+++++.|+.||+..|+... .+|...  +..|+.|++++|.++-+|..++.+++|+.|.+..|.+             
T Consensus        96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-------------  162 (264)
T KOG0617|consen   96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-------------  162 (264)
T ss_pred             cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-------------
Confidence            888888888888888865443 244433  3445555555555555555555555555555544432             


Q ss_pred             CCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhc
Q 047461          225 LGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQ  268 (312)
Q Consensus       225 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~  268 (312)
                                  -.+|..++.+..|++|.+.+|+++.+|+.++.
T Consensus       163 ------------l~lpkeig~lt~lrelhiqgnrl~vlppel~~  194 (264)
T KOG0617|consen  163 ------------LSLPKEIGDLTRLRELHIQGNRLTVLPPELAN  194 (264)
T ss_pred             ------------hhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence                        23444455555555555555555555555443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.56  E-value=2.5e-15  Score=130.61  Aligned_cols=238  Identities=20%  Similarity=0.162  Sum_probs=143.6

Q ss_pred             cchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC-------cc-CcCCccEEeCCCCcc
Q 047461           22 SNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS-------NL-SAEKLMLLEVPDSDI   92 (312)
Q Consensus        22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-------~~-~l~~L~~L~l~~~~~   92 (312)
                      ...|..+.+|+.|+++++.+....  ...+.+.+.. +++++++++++.+...+.       .+ .+++|+.|++++|.+
T Consensus        16 ~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~   93 (319)
T cd00116          16 TELLPKLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNAL   93 (319)
T ss_pred             HHHHHHHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCC
Confidence            356677788999999987753321  1223333334 678888888876542111       11 566888888888776


Q ss_pred             cch-hhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCc----cccccccCC-CcCcEEeccCCCC
Q 047461           93 KRL-WDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLK----SLPSGIFNL-EFLTKLDLSGCSK  166 (312)
Q Consensus        93 ~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L~l~~~~~  166 (312)
                      ... +..+..+                       ... ++|++|++++|.+..    .+...+..+ ++|+.|++++|..
T Consensus        94 ~~~~~~~~~~l-----------------------~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l  149 (319)
T cd00116          94 GPDGCGVLESL-----------------------LRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRL  149 (319)
T ss_pred             ChhHHHHHHHH-----------------------hcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcC
Confidence            531 1111111                       111 357777777776442    122234445 6777777777653


Q ss_pred             CCC----CCccc--cCCCCeEEcCCccccc-----chHHHHhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEecc
Q 047461          167 LKR----LPEIS--SGNISWLFLRGIAIEE-----LPSSIERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLC  231 (312)
Q Consensus       167 l~~----~p~~~--~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~  231 (312)
                      ...    ++...  ..+++.|++.+|.++.     ++..+..+++|++|++++|.+.+.    +...+..+++|++|+++
T Consensus       150 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls  229 (319)
T cd00116         150 EGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG  229 (319)
T ss_pred             CchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence            321    11111  2467788887777762     333455566888888888876532    33445567788888888


Q ss_pred             CCCCCCcchhhhh-----CCCCCcEEeccCCCCc-----ccchHhhccCCCcEEEecCCcCCcc
Q 047461          232 GCSNLQRLPECLG-----QLSSPITFNLAKTNIE-----RIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       232 ~~~~~~~~p~~~~-----~l~~L~~L~l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      +|.+.+.....+.     ..+.|++|++++|.++     .+...+..+++|+++++++|.+.+.
T Consensus       230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            8876653222222     2368888888888875     2344556677888888888888754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=1.5e-16  Score=119.64  Aligned_cols=156  Identities=22%  Similarity=0.307  Sum_probs=130.8

Q ss_pred             cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCE
Q 047461          126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGY  203 (312)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~  203 (312)
                      +-.+..++.|.+++|. ...+|+.+..+.+|+.|++++ +.+..+|...  .++|+.|+++-|.+..+|..+|.++-|+.
T Consensus        29 Lf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~lev  106 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEV  106 (264)
T ss_pred             ccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhh
Confidence            4445667778888887 666676677788888888887 5566666543  56788888888888889999999999999


Q ss_pred             EecCCCCCCC-cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcC
Q 047461          204 LDLSDCKRLK-SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       204 L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      ||+++|++.. .+|..|+.++.|+.|++++|. .+-+|..++++++|+.|.+..|.+-.+|..++.+..|++|.+.+|.+
T Consensus       107 ldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            9999988754 788889999999999999864 57789999999999999999999999999999999999999999988


Q ss_pred             Cc
Q 047461          283 ED  284 (312)
Q Consensus       283 ~~  284 (312)
                      ..
T Consensus       186 ~v  187 (264)
T KOG0617|consen  186 TV  187 (264)
T ss_pred             ee
Confidence            65

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.49  E-value=6.4e-15  Score=128.04  Aligned_cols=256  Identities=18%  Similarity=0.117  Sum_probs=161.3

Q ss_pred             eEEEEeecCCccc--cCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-CCcc-Cc
Q 047461            5 IEGMCLDMSKVKE--LHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-PSNL-SA   79 (312)
Q Consensus         5 i~~~~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~-~l   79 (312)
                      ++.+.+.......  .....+.+...+++++++++++.+.+...........+.. ++|++|+++++.+... +..+ .+
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l  104 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESL  104 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHH
Confidence            5566666554421  1223355667788999999987652100011112223333 7999999999987632 2222 23


Q ss_pred             ---CCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCC-cCCcEEEcCCCCcCc----ccccccc
Q 047461           80 ---EKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL-NKLVTLNLRGSKSLK----SLPSGIF  151 (312)
Q Consensus        80 ---~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~l~  151 (312)
                         ++|++|++++|.+.......                    +..  .+..+ ++|+.|++++|.+.+    .++..+.
T Consensus       105 ~~~~~L~~L~ls~~~~~~~~~~~--------------------l~~--~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116         105 LRSSSLQELKLNNNGLGDRGLRL--------------------LAK--GLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             hccCcccEEEeeCCccchHHHHH--------------------HHH--HHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence               45999999998876321110                    000  22233 578888888887653    2333455


Q ss_pred             CCCcCcEEeccCCCCCCC-CCcc---c--cCCCCeEEcCCccccc-----chHHHHhcCCCCEEecCCCCCCCcCchhhh
Q 047461          152 NLEFLTKLDLSGCSKLKR-LPEI---S--SGNISWLFLRGIAIEE-----LPSSIERLLRLGYLDLSDCKRLKSLPSSLY  220 (312)
Q Consensus       152 ~~~~L~~L~l~~~~~l~~-~p~~---~--~~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~  220 (312)
                      .+++|++|++++|..... ++..   .  .++|++|++++|.++.     +...+..+++|++|++++|.+.+.....+.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence            667888888888653321 1111   1  2488899998888763     344566788999999999987653222222


Q ss_pred             -----cCCCCCeEeccCCCCCC----cchhhhhCCCCCcEEeccCCCCccc-----chHhhcc-CCCcEEEecCCcC
Q 047461          221 -----RLKSLGVLSLCGCSNLQ----RLPECLGQLSSPITFNLAKTNIERI-----PESIIQL-FVSGYLLLSYGIV  282 (312)
Q Consensus       221 -----~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~l~~~-----~~~l~~~-~~L~~L~l~~n~~  282 (312)
                           ..+.|+.|++++|.+..    .+...+..+++|+.+++++|.++.-     ...+... +.++++++.+|++
T Consensus       243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence                 13789999999998763    3456666778999999999999832     2344444 6899999988763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.48  E-value=1.3e-15  Score=128.39  Aligned_cols=265  Identities=17%  Similarity=0.105  Sum_probs=142.1

Q ss_pred             EEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCC-CCCCCCCCcc--CcCC
Q 047461            6 EGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLKSLPSNL--SAEK   81 (312)
Q Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~-~~~~~~~~~~--~l~~   81 (312)
                      -+|.||.+.  .-..++++|+.+++||.|++++|.+      ...-+..+.. .++.+|.+.+ |+++++|...  ++..
T Consensus        70 veirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~I------s~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~s  141 (498)
T KOG4237|consen   70 VEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNI------SFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSS  141 (498)
T ss_pred             eEEEeccCC--cccCChhhccchhhhceecccccch------hhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHH
Confidence            355555554  3455668899999999999999875      2333444444 5555555555 7888888754  7888


Q ss_pred             ccEEeCCCCcccchh-hhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCc------------cccc
Q 047461           82 LMLLEVPDSDIKRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLK------------SLPS  148 (312)
Q Consensus        82 L~~L~l~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~  148 (312)
                      ++.|.+.-|++..++ +.+..++++..|+....  ....++. .++..+..++++.+..|.+.-            ..|.
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn--~~q~i~~-~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i  218 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDN--KIQSICK-GTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI  218 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccch--hhhhhcc-ccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence            888888888888665 56778888875443321  1233322 145566777777777765321            1222


Q ss_pred             cccCCCcCcEEeccCCCCCCCCCccc-cCCCCeE--EcC-Ccccc-cch-HHHHhcCCCCEEecCCCCCCCcCchhhhcC
Q 047461          149 GIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWL--FLR-GIAIE-ELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRL  222 (312)
Q Consensus       149 ~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L--~l~-~~~l~-~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l  222 (312)
                      +++++.-..-..+.. ......+.-. ...++.+  .+. .+... .-| ..++.+++|+.|++++|+++..-+.+|...
T Consensus       219 etsgarc~~p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~  297 (498)
T KOG4237|consen  219 ETSGARCVSPYRLYY-KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA  297 (498)
T ss_pred             hcccceecchHHHHH-HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence            222222111111111 0011010000 0011111  011 11111 112 235556666666666666666555566666


Q ss_pred             CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcC
Q 047461          223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       223 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      ..++.|.+..|.+-..--..|.++..|+.|++.+|+|+ -.|..+....+|.+|.+-.|++
T Consensus       298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            66666666665543333344556666666666666666 3344555566666666666555

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.28  E-value=1.3e-13  Score=116.63  Aligned_cols=100  Identities=11%  Similarity=0.027  Sum_probs=76.1

Q ss_pred             CCCcCc-hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCCccccc
Q 047461          211 RLKSLP-SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVEDTLRI  288 (312)
Q Consensus       211 ~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~  288 (312)
                      .....| ..|+.++.|+++++++|.+.+--+.+|.+...+++|.+..|++..+. ..+..+..|+.|+|++|+++...+ 
T Consensus       261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~-  339 (498)
T KOG4237|consen  261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAP-  339 (498)
T ss_pred             cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEec-
Confidence            334444 36889999999999999988888889999999999999999998554 467889999999999999975333 


Q ss_pred             cccCCCCchhHHHhhhcceeeec
Q 047461          289 QHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      .-++.+-.+.-+....++|.|.|
T Consensus       340 ~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             ccccccceeeeeehccCcccCcc
Confidence            22334444544455566666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=6.8e-13  Score=117.07  Aligned_cols=206  Identities=23%  Similarity=0.329  Sum_probs=156.5

Q ss_pred             eeCCCCCCCCCCcc---CcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461           64 HWHGYPLKSLPSNL---SAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR  138 (312)
Q Consensus        64 ~l~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  138 (312)
                      .|++-+++.+|...   .+..-...+++.|.+..+|...+.+..|+  .|+.+.    +..++.  .++.+..|..|+++
T Consensus        56 ~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~----~r~ip~--~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   56 LLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNC----IRTIPE--AICNLEALTFLDLS  129 (722)
T ss_pred             ccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhcc----ceecch--hhhhhhHHHHhhhc
Confidence            34444455555433   56666788999999999998888888888  445444    556666  78888999999999


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP  216 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (312)
                      .|+ ...+|..+..++ |+.|.++. +.++.+|.-.  ...+..|+.+.|.+..+|..++++.+|+.|.+..|.. -.+|
T Consensus       130 ~Nq-lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l-~~lp  205 (722)
T KOG0532|consen  130 SNQ-LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHL-EDLP  205 (722)
T ss_pred             cch-hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhh-hhCC
Confidence            998 667777776666 88888888 5566666443  4677888889999999999999999999998888775 4456


Q ss_pred             hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhh---ccCCCcEEEecCCc
Q 047461          217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESII---QLFVSGYLLLSYGI  281 (312)
Q Consensus       217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~---~~~~L~~L~l~~n~  281 (312)
                      ..+..++ |..||+++|+ ...+|..|.++..|++|-|.+|.++.-|..+.   ...-.++|+..-|+
T Consensus       206 ~El~~Lp-Li~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  206 EELCSLP-LIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHHhCCc-eeeeecccCc-eeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            6676664 8889998754 56788899999999999999999987777653   45556888888884

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.25  E-value=1.2e-13  Score=121.75  Aligned_cols=190  Identities=26%  Similarity=0.300  Sum_probs=151.3

Q ss_pred             EeCCCCcccchhhhcccCCCch-----hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEE
Q 047461           85 LEVPDSDIKRLWDCVKHYSKLN-----QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKL  159 (312)
Q Consensus        85 L~l~~~~~~~~~~~~~~l~~L~-----~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L  159 (312)
                      |.|++-.++.+|.+-.. +.|.     +++.+.    ..++|.  .+..+..|+.+.+..|. ...+|..+..+..|+++
T Consensus        55 l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR----~~elp~--~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l  126 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNR----FSELPE--EACAFVSLESLILYHNC-IRTIPEAICNLEALTFL  126 (722)
T ss_pred             cccccchhhcCCCcccc-ccccchhhhhccccc----cccCch--HHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHh
Confidence            44555555555543333 4444     566666    455665  67778889999999887 66777778899999999


Q ss_pred             eccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCc
Q 047461          160 DLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR  238 (312)
Q Consensus       160 ~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  238 (312)
                      +++. +.+..+|.-. ..-|++|-+++|+++.+|..++....|..||.+.|++ ..+|..++.+.+|+.+.++.|+. ..
T Consensus       127 ~ls~-NqlS~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei-~slpsql~~l~slr~l~vrRn~l-~~  203 (722)
T KOG0532|consen  127 DLSS-NQLSHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEI-QSLPSQLGYLTSLRDLNVRRNHL-ED  203 (722)
T ss_pred             hhcc-chhhcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhh-hhchHHhhhHHHHHHHHHhhhhh-hh
Confidence            9999 5566666443 4678999999999999999999888999999999885 45677799999999999999765 55


Q ss_pred             chhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccc
Q 047461          239 LPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       239 ~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~  286 (312)
                      +|..++.++ |..||++.|+++.+|.++.+++.|++|.|++|++...+
T Consensus       204 lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  204 LPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             CCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCCCCCCh
Confidence            777777554 99999999999999999999999999999999996543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=2.2e-12  Score=110.54  Aligned_cols=177  Identities=18%  Similarity=0.120  Sum_probs=121.1

Q ss_pred             CcCCCcCCcEEEcCCCCcCcccc--ccccCCCcCcEEeccCCCCCCCCCcc---ccCCCCeEEcCCcccc--cchHHHHh
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLP--SGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLFLRGIAIE--ELPSSIER  197 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~--~~l~~~~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~--~l~~~~~~  197 (312)
                      ....|+.++.|++++|-+....+  .....+++|+.|+++.|.........   ...+++.|.+.+|+++  ++-..+..
T Consensus       141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~  220 (505)
T KOG3207|consen  141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT  220 (505)
T ss_pred             hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence            45678889999999886544322  23456888999999886433221111   1468889999999888  35555677


Q ss_pred             cCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcc-hhhhhCCCCCcEEeccCCCCc--ccchH-----hhcc
Q 047461          198 LLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRL-PECLGQLSSPITFNLAKTNIE--RIPES-----IIQL  269 (312)
Q Consensus       198 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~n~l~--~~~~~-----l~~~  269 (312)
                      +++|+.|++..|...........-+..|+.|+|++|++...- -.....++.|..|+++.|.++  ..|++     ...+
T Consensus       221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f  300 (505)
T KOG3207|consen  221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTF  300 (505)
T ss_pred             CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccc
Confidence            889999999888543333333444567888999888765421 133457788888888888887  44443     3567


Q ss_pred             CCCcEEEecCCcCCccccccccCCCCchhHHH
Q 047461          270 FVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE  301 (312)
Q Consensus       270 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  301 (312)
                      ++|++|++..|++.++....++..++.+..+.
T Consensus       301 ~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  301 PKLEYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             ccceeeecccCccccccccchhhccchhhhhh
Confidence            88999999999888877777766666665543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.10  E-value=5.1e-11  Score=92.89  Aligned_cols=83  Identities=23%  Similarity=0.125  Sum_probs=20.8

Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEecc
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNLA  255 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~  255 (312)
                      +++.|++++|+++.+. .+..++.|+.|++++|++....+.....+++|+.|++++|.+... --..+..+++|+.|++.
T Consensus        43 ~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~  121 (175)
T PF14580_consen   43 KLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLE  121 (175)
T ss_dssp             T--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-T
T ss_pred             CCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeecc
Confidence            4445555555544443 233344455555555443332111112344455555544443220 11233344444445544


Q ss_pred             CCCCc
Q 047461          256 KTNIE  260 (312)
Q Consensus       256 ~n~l~  260 (312)
                      +|+++
T Consensus       122 ~NPv~  126 (175)
T PF14580_consen  122 GNPVC  126 (175)
T ss_dssp             T-GGG
T ss_pred             CCccc
Confidence            44444

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.08  E-value=1.5e-11  Score=102.74  Aligned_cols=107  Identities=20%  Similarity=0.126  Sum_probs=80.9

Q ss_pred             CCCCeEEcCCccccc-----chHHHHhcCCCCEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCcchhhh---
Q 047461          176 GNISWLFLRGIAIEE-----LPSSIERLLRLGYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQRLPECL---  243 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~-----l~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~---  243 (312)
                      +.|+.+.+..|.|..     +...+..+++|+.|||.+|.++.    .+...+..++.|+.++++.|.+...-...+   
T Consensus       185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a  264 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA  264 (382)
T ss_pred             cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence            466677777766552     34567789999999999987654    345567788999999999998875433322   


Q ss_pred             --hCCCCCcEEeccCCCCc-----ccchHhhccCCCcEEEecCCcC
Q 047461          244 --GQLSSPITFNLAKTNIE-----RIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       244 --~~l~~L~~L~l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                        ...++|++|.+.+|.++     .+..++...+.|..|+|++|.+
T Consensus       265 l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  265 LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence              24689999999999987     2333556789999999999998

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.05  E-value=1.3e-10  Score=95.44  Aligned_cols=126  Identities=22%  Similarity=0.212  Sum_probs=91.7

Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      .|+.+++++|.++.+-..+.-.+.++.|++++|.+....  .+..+++|+.||+++|.+ .++..+-.++.+.+.|.++.
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhh
Confidence            577888888888887777777788888888888765432  266788888888888654 33334444667788888888


Q ss_pred             CCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcc
Q 047461          257 TNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEV  306 (312)
Q Consensus       257 n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (312)
                      |.+..+ ..++.+-+|.+|++++|++......+++..+|.++++....++
T Consensus       362 N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  362 NKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            877655 4467778888888888888777777777778887776554443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=7.1e-11  Score=97.01  Aligned_cols=105  Identities=22%  Similarity=0.219  Sum_probs=56.6

Q ss_pred             CCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461          176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA  255 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  255 (312)
                      ++++.|+++.|++..+.. +..+++|+.||+++|.+... ...-..+.+.++|.++.|.+ ..+ ..+.++-+|..||++
T Consensus       307 Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKtL~La~N~i-E~L-SGL~KLYSLvnLDl~  382 (490)
T KOG1259|consen  307 PKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAEC-VGWHLKLGNIKTLKLAQNKI-ETL-SGLRKLYSLVNLDLS  382 (490)
T ss_pred             cceeEEeccccceeeehh-hhhcccceEeecccchhHhh-hhhHhhhcCEeeeehhhhhH-hhh-hhhHhhhhheecccc
Confidence            455555555555554433 55566666666666553332 22223455566666665432 111 233445566666666


Q ss_pred             CCCCcccc--hHhhccCCCcEEEecCCcCCc
Q 047461          256 KTNIERIP--ESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       256 ~n~l~~~~--~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +|+|..+.  ..++++|.|+.+.+.+|++.+
T Consensus       383 ~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  383 SNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             ccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            66665322  346666777777777766643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.03  E-value=5.1e-10  Score=87.30  Aligned_cols=81  Identities=30%  Similarity=0.281  Sum_probs=20.7

Q ss_pred             CCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHH-HhcCCCCEEecCCCCCCCc-CchhhhcCCCCCeEe
Q 047461          153 LEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKS-LPSSLYRLKSLGVLS  229 (312)
Q Consensus       153 ~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~  229 (312)
                      +.+|+.|++++| .+..++... ...|+.|++++|.++++...+ ..+++|+.|++++|++... ....++.+++|+.|+
T Consensus        41 l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   41 LDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             -TT--EEE-TTS---S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             hcCCCEEECCCC-CCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            444455555542 222222222 234455555555554443322 2344555555554444221 112344444455555


Q ss_pred             ccCCC
Q 047461          230 LCGCS  234 (312)
Q Consensus       230 l~~~~  234 (312)
                      +.+|.
T Consensus       120 L~~NP  124 (175)
T PF14580_consen  120 LEGNP  124 (175)
T ss_dssp             -TT-G
T ss_pred             ccCCc
Confidence            54443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=6.1e-10  Score=99.75  Aligned_cols=153  Identities=37%  Similarity=0.441  Sum_probs=103.2

Q ss_pred             CCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--ccCCCCeEEcCCcccccchHHHHhcCCCCEEecCC
Q 047461          131 KLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSD  208 (312)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~  208 (312)
                      +|+.|++++|. ...+|..+..++.|+.|+++.| .+..+|..  ....++.|++++|.++.+|........|+++.+++
T Consensus       141 nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~  218 (394)
T COG4886         141 NLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSN  218 (394)
T ss_pred             hcccccccccc-hhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcC
Confidence            67777777776 5555444667777777777774 34444443  24677788888888888877665666678888877


Q ss_pred             CCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccc
Q 047461          209 CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRI  288 (312)
Q Consensus       209 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  288 (312)
                      |.... .+..+..+.++..+.+.+|.+ ..++..+..+++++.|++++|.++.++. ++...+++.|+++++.+....+.
T Consensus       219 N~~~~-~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         219 NSIIE-LLSSLSNLKNLSGLELSNNKL-EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             Cccee-cchhhhhcccccccccCCcee-eeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence            75333 334456667777777665443 3335666777778888888888887666 77778888888888877654333

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=9.3e-11  Score=100.71  Aligned_cols=203  Identities=18%  Similarity=0.170  Sum_probs=100.5

Q ss_pred             cCCccEEeCCCCcccchhh--hcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccc-cCC
Q 047461           79 AEKLMLLEVPDSDIKRLWD--CVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGI-FNL  153 (312)
Q Consensus        79 l~~L~~L~l~~~~~~~~~~--~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-~~~  153 (312)
                      ++.|+.+.+.++.+...+.  -...|++++  +|+.+-+.++ ..+..  -...+|+|+.|+++.|.+.-...... ..+
T Consensus       120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw-~~v~~--i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNW-FPVLK--IAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhH-HHHHH--HHHhcccchhcccccccccCCccccchhhh
Confidence            4445555555555443331  234455555  3333333322 11111  22345566666666665322211111 135


Q ss_pred             CcCcEEeccCCCCCCC-CCcc--ccCCCCeEEcCCc-ccccchHHHHhcCCCCEEecCCCCCCCcC-chhhhcCCCCCeE
Q 047461          154 EFLTKLDLSGCSKLKR-LPEI--SSGNISWLFLRGI-AIEELPSSIERLLRLGYLDLSDCKRLKSL-PSSLYRLKSLGVL  228 (312)
Q Consensus       154 ~~L~~L~l~~~~~l~~-~p~~--~~~~L~~L~l~~~-~l~~l~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L  228 (312)
                      ++|+.|.++.|..... +-..  .++.++.|++.+| .+..-...-..+..|+.|||++|.+.... -...+.++.|+.|
T Consensus       197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L  276 (505)
T KOG3207|consen  197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL  276 (505)
T ss_pred             hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence            5666666666543210 0000  0356666666666 22211111222345667777776654421 1235566667777


Q ss_pred             eccCCCCCC-cchhh-----hhCCCCCcEEeccCCCCcccc--hHhhccCCCcEEEecCCcCCc
Q 047461          229 SLCGCSNLQ-RLPEC-----LGQLSSPITFNLAKTNIERIP--ESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       229 ~l~~~~~~~-~~p~~-----~~~l~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      .++.|.+.. ..|+.     ...+++|+.|++..|++...+  ..+..+++|+.|.+..|++..
T Consensus       277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            766665432 22222     345677888888888876443  346667777777777777643

>PLN03150 hypothetical protein; Provisional

Probab=98.95  E-value=3.7e-09  Score=99.59  Aligned_cols=106  Identities=27%  Similarity=0.304  Sum_probs=95.1

Q ss_pred             CCeEEcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          178 ISWLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       178 L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      ++.|+|.+|.++ .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..++.+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            678999999888 5888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCc-ccchHhhcc-CCCcEEEecCCcCC
Q 047461          257 TNIE-RIPESIIQL-FVSGYLLLSYGIVE  283 (312)
Q Consensus       257 n~l~-~~~~~l~~~-~~L~~L~l~~n~~~  283 (312)
                      |.++ .+|..++.. .++..+++.+|...
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccc
Confidence            9998 888887653 46778899988653

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.93  E-value=1.6e-09  Score=97.04  Aligned_cols=187  Identities=27%  Similarity=0.347  Sum_probs=117.1

Q ss_pred             EeeCCCCC-CCCCCccCcCCccEEeCCCCcccchhhhcccCC-Cchh--cchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461           63 LHWHGYPL-KSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS-KLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLR  138 (312)
Q Consensus        63 L~l~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~-~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  138 (312)
                      +....+.+ .........+.++.+++.++.+..++....... +|+.  ++.+.    +..++.  .++.++.|+.|+++
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~----i~~l~~--~~~~l~~L~~L~l~  171 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK----IESLPS--PLRNLPNLKNLDLS  171 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc----hhhhhh--hhhccccccccccC
Confidence            45555544 333333355667777777777777666655553 6663  33333    333333  56677777888887


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--ccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--SSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP  216 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (312)
                      +|. ...+|......+.|+.|++++ +.+..+|..  ....|+.+.+++|.+...+..+..+.++..+.+.+|++.. ++
T Consensus       172 ~N~-l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~  248 (394)
T COG4886         172 FND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LP  248 (394)
T ss_pred             Cch-hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-cc
Confidence            777 555565444677777777777 445556654  2345777777777666666666677777777766665433 24


Q ss_pred             hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      ..++.+++++.|++++|.+.. ++. +..+.+++.|+++++.++
T Consensus       249 ~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             chhccccccceeccccccccc-ccc-ccccCccCEEeccCcccc
Confidence            556677778888887765433 332 667777888888877765

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.91  E-value=6.5e-10  Score=93.04  Aligned_cols=207  Identities=16%  Similarity=0.114  Sum_probs=139.7

Q ss_pred             CcCCccEEeCCCCccc-----chhhhcccCCCch--hcchhhcccccccCCC-----CCCcCCCcCCcEEEcCCCCcCcc
Q 047461           78 SAEKLMLLEVPDSDIK-----RLWDCVKHYSKLN--QIIHAACHKLIAKIPN-----PTLMPRLNKLVTLNLRGSKSLKS  145 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~-----~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~~  145 (312)
                      .+..++.+++++|.+.     .+...+...++|+  +++.-.......++|.     ...+..+++|++|++|+|.+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            4566777777777765     2333455556666  3332222222222211     11455677999999999987655


Q ss_pred             ccc----cccCCCcCcEEeccCCCCCCC-----------C---Ccc-ccCCCCeEEcCCcccccch-----HHHHhcCCC
Q 047461          146 LPS----GIFNLEFLTKLDLSGCSKLKR-----------L---PEI-SSGNISWLFLRGIAIEELP-----SSIERLLRL  201 (312)
Q Consensus       146 ~~~----~l~~~~~L~~L~l~~~~~l~~-----------~---p~~-~~~~L~~L~l~~~~l~~l~-----~~~~~l~~L  201 (312)
                      .+.    .+.+...|++|.+.+|..-..           +   ... ..++|+++...+|.+..-+     ..+...+.|
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            444    345678899999999753211           0   000 1368999999999887543     446677899


Q ss_pred             CEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCc-c----cchHh-h
Q 047461          202 GYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIE-R----IPESI-I  267 (312)
Q Consensus       202 ~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~-~----~~~~l-~  267 (312)
                      +.+.+..|.+..    .+...+..++.|+.|++.+|.+...    +...++.+++|+.|++++|.+. .    +...+ .
T Consensus       188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~  267 (382)
T KOG1909|consen  188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE  267 (382)
T ss_pred             ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence            999999987643    2445688899999999999877643    4566778899999999999987 2    22222 3


Q ss_pred             ccCCCcEEEecCCcCCc
Q 047461          268 QLFVSGYLLLSYGIVED  284 (312)
Q Consensus       268 ~~~~L~~L~l~~n~~~~  284 (312)
                      ..|+|+.|.+.+|.+..
T Consensus       268 ~~p~L~vl~l~gNeIt~  284 (382)
T KOG1909|consen  268 SAPSLEVLELAGNEITR  284 (382)
T ss_pred             cCCCCceeccCcchhHH
Confidence            57899999999999864

>PLN03150 hypothetical protein; Provisional

Probab=98.77  E-value=1.9e-08  Score=94.88  Aligned_cols=88  Identities=24%  Similarity=0.310  Sum_probs=82.5

Q ss_pred             CCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecC
Q 047461          201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSY  279 (312)
Q Consensus       201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~  279 (312)
                      ++.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++ .+|+.++.+++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            678999999999999999999999999999999999999999999999999999999999 7899999999999999999


Q ss_pred             CcCCccccc
Q 047461          280 GIVEDTLRI  288 (312)
Q Consensus       280 n~~~~~~~~  288 (312)
                      |.+.+..+.
T Consensus       500 N~l~g~iP~  508 (623)
T PLN03150        500 NSLSGRVPA  508 (623)
T ss_pred             CcccccCCh
Confidence            999876654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.73  E-value=1.2e-10  Score=99.56  Aligned_cols=154  Identities=18%  Similarity=0.137  Sum_probs=107.5

Q ss_pred             CCCcCcEEeccCCCCCCCCCccc----cCCCCeEEcCCc-ccccch--HHHHhcCCCCEEecCCCCCCCc--CchhhhcC
Q 047461          152 NLEFLTKLDLSGCSKLKRLPEIS----SGNISWLFLRGI-AIEELP--SSIERLLRLGYLDLSDCKRLKS--LPSSLYRL  222 (312)
Q Consensus       152 ~~~~L~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~-~l~~l~--~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l  222 (312)
                      ....|+.|+.++|...++.+...    ..+|+++-+.++ ++++.-  ..-.+++.|+.+++..+....+  +...-.++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            35677888888877666544332    367888888877 344332  2234677899999887755432  23333467


Q ss_pred             CCCCeEeccCCCCCCcc-----hhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCCcCCcccccccc-CCC
Q 047461          223 KSLGVLSLCGCSNLQRL-----PECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGIVEDTLRIQHT-NHT  294 (312)
Q Consensus       223 ~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~-~~~  294 (312)
                      +.|+.+.+++|.....-     ...-+....|+.+.+++++++  ..-+.+..+++|+.+++.+|......++..+ +++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l  451 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL  451 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence            88999999998654322     334456788999999999876  4556788999999999999988666665555 569


Q ss_pred             CchhHHHhhhc
Q 047461          295 PAVRWQEIWQE  305 (312)
Q Consensus       295 ~~~~~~~~~~~  305 (312)
                      |.+++..++.+
T Consensus       452 p~i~v~a~~a~  462 (483)
T KOG4341|consen  452 PNIKVHAYFAP  462 (483)
T ss_pred             ccceehhhccC
Confidence            99888776443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=3.2e-08  Score=63.48  Aligned_cols=58  Identities=26%  Similarity=0.327  Sum_probs=29.9

Q ss_pred             CCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCc
Q 047461          224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGI  281 (312)
Q Consensus       224 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~  281 (312)
                      +|++|++++|.+..-.+..|.++++|+.|++++|.++.++ ..+..+++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            4455555554433333344555555555555555555433 244555556666655554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.59  E-value=3.9e-08  Score=63.05  Aligned_cols=61  Identities=26%  Similarity=0.322  Sum_probs=53.0

Q ss_pred             CCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCC
Q 047461          199 LRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI  259 (312)
Q Consensus       199 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l  259 (312)
                      ++|++|++++|++...-+..+..+++|++|++++|.+..-.|..|.++++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4789999999987766667888999999999999888766677899999999999999975

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.52  E-value=7.5e-08  Score=93.23  Aligned_cols=82  Identities=20%  Similarity=0.288  Sum_probs=58.4

Q ss_pred             CcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCccc-chhh
Q 047461           21 NSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIK-RLWD   97 (312)
Q Consensus        21 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~-~~~~   97 (312)
                      ..+.|..|+.|++|++++|.      ....+|..++. .+||+|++++..+..+|..+ .++.|.+|++..+... .++.
T Consensus       563 s~~ff~~m~~LrVLDLs~~~------~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  563 SGEFFRSLPLLRVLDLSGNS------SLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG  636 (889)
T ss_pred             CHHHHhhCcceEEEECCCCC------ccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc
Confidence            33557788888888888755      55677777777 88888888888888888776 7778888888776533 3334


Q ss_pred             hcccCCCchhc
Q 047461           98 CVKHYSKLNQI  108 (312)
Q Consensus        98 ~~~~l~~L~~l  108 (312)
                      ....+++|+.|
T Consensus       637 i~~~L~~Lr~L  647 (889)
T KOG4658|consen  637 ILLELQSLRVL  647 (889)
T ss_pred             hhhhcccccEE
Confidence            44556777643

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.51  E-value=1.2e-08  Score=93.27  Aligned_cols=108  Identities=21%  Similarity=0.166  Sum_probs=51.5

Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchh-hhhCCCCCcEEecc
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFNLA  255 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~  255 (312)
                      +|...+++.|.+..+-..+.-++-++.|+|++|++....  .+..++.|++|||+.|.+.. +|. ...++. |..|.++
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heeeeec
Confidence            344444445555444444444555555666655543332  34555556666665544322 111 111222 5555555


Q ss_pred             CCCCcccchHhhccCCCcEEEecCCcCCcccccc
Q 047461          256 KTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQ  289 (312)
Q Consensus       256 ~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  289 (312)
                      +|.++.+ ..+.++++|+.||+++|-+.+...+.
T Consensus       241 nN~l~tL-~gie~LksL~~LDlsyNll~~hseL~  273 (1096)
T KOG1859|consen  241 NNALTTL-RGIENLKSLYGLDLSYNLLSEHSELE  273 (1096)
T ss_pred             ccHHHhh-hhHHhhhhhhccchhHhhhhcchhhh
Confidence            5555544 23455555555555555555443333

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.46  E-value=1.7e-07  Score=90.73  Aligned_cols=100  Identities=22%  Similarity=0.365  Sum_probs=65.8

Q ss_pred             CCccEEeeCCCC--CCCCCCc-c-CcCCccEEeCCCC-cccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCc
Q 047461           58 AEVKYLHWHGYP--LKSLPSN-L-SAEKLMLLEVPDS-DIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLN  130 (312)
Q Consensus        58 ~~L~~L~l~~~~--~~~~~~~-~-~l~~L~~L~l~~~-~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~  130 (312)
                      ++|++|-+.++.  +..++.. | .++.|++||+++| .+..+|..++.+-+|+  +++.+.    +..+|.  .++++.
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~----I~~LP~--~l~~Lk  618 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTG----ISHLPS--GLGNLK  618 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCC----ccccch--HHHHHH
Confidence            567777777765  4555543 2 6778888888765 3557777777777777  444444    445666  777777


Q ss_pred             CCcEEEcCCCCcCccccccccCCCcCcEEeccC
Q 047461          131 KLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSG  163 (312)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  163 (312)
                      .|.+|++.++.....+|.....+++|++|.+..
T Consensus       619 ~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             hhheeccccccccccccchhhhcccccEEEeec
Confidence            778887777665555544444577777777765

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.42  E-value=1.8e-08  Score=90.74  Aligned_cols=152  Identities=25%  Similarity=0.247  Sum_probs=71.6

Q ss_pred             cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHH-HHhcCCCCE
Q 047461          126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSS-IERLLRLGY  203 (312)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~  203 (312)
                      +..+++|++|++++|. ++.+.. +..++.|+.|++++| .+..+.... ...++.+++++|.+..+... ...+.+++.
T Consensus       114 l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~l~~N-~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~  190 (414)
T KOG0531|consen  114 LSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELNLSGN-LISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEE  190 (414)
T ss_pred             hhhhhcchheeccccc-cccccc-hhhccchhhheeccC-cchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence            4445566666666665 333322 445555666666663 333333332 34566666666666655443 345556666


Q ss_pred             EecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC--CCcEEeccCCCCcccchHhhccCCCcEEEecCCc
Q 047461          204 LDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS--SPITFNLAKTNIERIPESIIQLFVSGYLLLSYGI  281 (312)
Q Consensus       204 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~--~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~  281 (312)
                      +++.+|.+...-.  +..+..+..+++..|.+...-+  +..+.  .|+.+++++|++..++..+..+..+..+++.+|.
T Consensus       191 l~l~~n~i~~i~~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  191 LDLGGNSIREIEG--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             HhccCCchhcccc--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence            6666654432211  1111122222333332221100  00111  2556666666665544445555666666666665


Q ss_pred             CCc
Q 047461          282 VED  284 (312)
Q Consensus       282 ~~~  284 (312)
                      +..
T Consensus       267 ~~~  269 (414)
T KOG0531|consen  267 ISN  269 (414)
T ss_pred             ccc
Confidence            543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=1.2e-08  Score=84.04  Aligned_cols=177  Identities=19%  Similarity=0.131  Sum_probs=84.9

Q ss_pred             CccEEeCCCCccc--chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccc--cccCCCcC
Q 047461           81 KLMLLEVPDSDIK--RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPS--GIFNLEFL  156 (312)
Q Consensus        81 ~L~~L~l~~~~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~L  156 (312)
                      .++++|++...++  ++-..+..|.+|+.|+.-... +...+..  .++...+|+.|+++.|.-.+....  .+.+++.|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~--~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVN--TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHH--HHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence            3777777777666  232334555566544433211 1111222  445556677777777654443221  24456677


Q ss_pred             cEEeccCCCCCCCCCccc----cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccC
Q 047461          157 TKLDLSGCSKLKRLPEIS----SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCG  232 (312)
Q Consensus       157 ~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  232 (312)
                      ..|++++|-.....-...    .+++..|+++++.-.                    -....+.--...+++|..||+++
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn--------------------l~~sh~~tL~~rcp~l~~LDLSD  322 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN--------------------LQKSHLSTLVRRCPNLVHLDLSD  322 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh--------------------hhhhHHHHHHHhCCceeeecccc
Confidence            777777765433211100    134444444443100                    00011122233455555555555


Q ss_pred             CCCC-CcchhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCC
Q 047461          233 CSNL-QRLPECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYG  280 (312)
Q Consensus       233 ~~~~-~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n  280 (312)
                      |... ......+.+++.|++|.++.|+.-  ..--.+...|+|.+|++.+|
T Consensus       323 ~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  323 SVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             ccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            5322 233344555666666666666532  11113456677777777766

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.35  E-value=9.1e-07  Score=52.24  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=30.8

Q ss_pred             CCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcccc
Q 047461          247 SSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLR  287 (312)
Q Consensus       247 ~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~  287 (312)
                      ++|++|++++|+|+.+|+.++.+++|+.|++++|++.+..+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            46788888888888888778888888888888888775443

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.29  E-value=4e-06  Score=73.64  Aligned_cols=109  Identities=30%  Similarity=0.491  Sum_probs=52.9

Q ss_pred             CCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccc---cchHHHHhcCCCCEEecC
Q 047461          131 KLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIE---ELPSSIERLLRLGYLDLS  207 (312)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~---~l~~~~~~l~~L~~L~l~  207 (312)
                      +|++|.+++|.-...+|..+  .++|++|.+++|..+..+|    ..|+.|++..+...   .+|.      +|+.|.+.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe~L~L~~n~~~~L~~LPs------sLk~L~I~  140 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESVRSLEIKGSATDSIKNVPN------GLTSLSIN  140 (426)
T ss_pred             CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----cccceEEeCCCCCcccccCcc------hHhheecc
Confidence            46666666655445555433  2456666666654444444    35566665544332   2332      34455443


Q ss_pred             CCCCC--CcCchhhhcC-CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461          208 DCKRL--KSLPSSLYRL-KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT  257 (312)
Q Consensus       208 ~n~~~--~~~~~~l~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n  257 (312)
                      +++..  ..++.   .+ ++|++|++++|.... +|+.+.  .+|+.|.++.+
T Consensus       141 ~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        141 SYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccccccccccc---ccCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence            22110  11111   12 357777777765432 232221  46777777665

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.25  E-value=3.5e-08  Score=90.27  Aligned_cols=170  Identities=22%  Similarity=0.226  Sum_probs=82.3

Q ss_pred             cCcCCccEEeCCCCcccchhhhccc-------------CCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcC
Q 047461           77 LSAEKLMLLEVPDSDIKRLWDCVKH-------------YSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSL  143 (312)
Q Consensus        77 ~~l~~L~~L~l~~~~~~~~~~~~~~-------------l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  143 (312)
                      +.+..|++|.++++.+.+. .++..             +..|+++....    .+++..   -..+..|...+.++|. +
T Consensus       106 fpF~sLr~LElrg~~L~~~-~GL~~lr~qLe~LIC~~Sl~Al~~v~asc----ggd~~n---s~~Wn~L~~a~fsyN~-L  176 (1096)
T KOG1859|consen  106 FPFRSLRVLELRGCDLSTA-KGLQELRHQLEKLICHNSLDALRHVFASC----GGDISN---SPVWNKLATASFSYNR-L  176 (1096)
T ss_pred             ccccceeeEEecCcchhhh-hhhHHHHHhhhhhhhhccHHHHHHHHHHh----cccccc---chhhhhHhhhhcchhh-H
Confidence            3678899999999888753 22111             11111211111    111111   1113457777777776 5


Q ss_pred             ccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCch-hhhcC
Q 047461          144 KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPS-SLYRL  222 (312)
Q Consensus       144 ~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l  222 (312)
                      ..+..++.-++.+++|++++|.                      +++.- .+..++.|++|||++|.+.. +|. ....+
T Consensus       177 ~~mD~SLqll~ale~LnLshNk----------------------~~~v~-~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc  232 (1096)
T KOG1859|consen  177 VLMDESLQLLPALESLNLSHNK----------------------FTKVD-NLRRLPKLKHLDLSYNCLRH-VPQLSMVGC  232 (1096)
T ss_pred             HhHHHHHHHHHHhhhhccchhh----------------------hhhhH-HHHhcccccccccccchhcc-ccccchhhh
Confidence            5555556566777777777743                      22221 23344455555555544321 221 00111


Q ss_pred             CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc--hHhhccCCCcEEEecCCcC
Q 047461          223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP--ESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       223 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~l~~n~~  282 (312)
                       .|+.|.+++|.+..-.  .+.++.+|+.||+++|-|....  ..++.+..|+.|.|.+|++
T Consensus       233 -~L~~L~lrnN~l~tL~--gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  233 -KLQLLNLRNNALTTLR--GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             -hheeeeecccHHHhhh--hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence             2555555554332211  2335555566666665554222  2344555566666666655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.23  E-value=1.4e-06  Score=71.17  Aligned_cols=205  Identities=13%  Similarity=0.096  Sum_probs=122.1

Q ss_pred             CcCCccEEeCCCCcccc-----hhhhcccCCCch--hcchhhcccc-------cccCCCCCCcCCCcCCcEEEcCCCCcC
Q 047461           78 SAEKLMLLEVPDSDIKR-----LWDCVKHYSKLN--QIIHAACHKL-------IAKIPNPTLMPRLNKLVTLNLRGSKSL  143 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~--~l~~~~~~~~-------~~~~~~~~~~~~l~~L~~L~l~~~~~~  143 (312)
                      .+..+..+++++|.+..     +...+..-.+|+  +++.......       ..-+..  .+..||+|+.+++|.|.+.
T Consensus        28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~--aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLK--ALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHH--HHhcCCcceeeeccccccC
Confidence            45667777777777662     223344445555  2222221111       111112  5567889999999999876


Q ss_pred             cccccc----ccCCCcCcEEeccCCCCCCCCCc---------------c-ccCCCCeEEcCCcccccchH-----HHHhc
Q 047461          144 KSLPSG----IFNLEFLTKLDLSGCSKLKRLPE---------------I-SSGNISWLFLRGIAIEELPS-----SIERL  198 (312)
Q Consensus       144 ~~~~~~----l~~~~~L~~L~l~~~~~l~~~p~---------------~-~~~~L~~L~l~~~~l~~l~~-----~~~~l  198 (312)
                      ...|+.    +++-+.|++|.+++|. ++.+..               . ..+.|++...+.|++...+.     .+...
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh  184 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH  184 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh
Confidence            666553    4566789999998864 322110               0 02578888888887775432     23334


Q ss_pred             CCCCEEecCCCCCCCc-----CchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCc--ccchHhh
Q 047461          199 LRLGYLDLSDCKRLKS-----LPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIE--RIPESII  267 (312)
Q Consensus       199 ~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~  267 (312)
                      .+|+.+.+.+|.+...     +-..++.+.+|+.|++.+|.++..    +...++.++.|+.|.+..|-++  .....+.
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~  264 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLR  264 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence            5778888887765432     112345667888888888766532    3445566777888888888776  2222222


Q ss_pred             -----ccCCCcEEEecCCcCCcc
Q 047461          268 -----QLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       268 -----~~~~L~~L~l~~n~~~~~  285 (312)
                           ..|+|..|-..+|...+.
T Consensus       265 ~f~e~~~p~l~~L~~~Yne~~~~  287 (388)
T COG5238         265 RFNEKFVPNLMPLPGDYNERRGG  287 (388)
T ss_pred             HhhhhcCCCccccccchhhhcCc
Confidence                 357777777888776553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=3.1e-07  Score=75.85  Aligned_cols=170  Identities=19%  Similarity=0.165  Sum_probs=116.9

Q ss_pred             CCcEEEcCCCCcCcc-ccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCc-cccc--chHHHHhcCCCCEE
Q 047461          131 KLVTLNLRGSKSLKS-LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGI-AIEE--LPSSIERLLRLGYL  204 (312)
Q Consensus       131 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~-~l~~--l~~~~~~l~~L~~L  204 (312)
                      .|+++|+++..+... +-..++.+.+|+.|.+.++..-..+-...  ..+|+.++++.+ ++++  +.-.+..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            599999998654322 22234567788888887743322221111  257999999876 6664  33457789999999


Q ss_pred             ecCCCCCCCcCch-hhhc-CCCCCeEeccCCCC--C-CcchhhhhCCCCCcEEeccCCC-Cc-ccchHhhccCCCcEEEe
Q 047461          205 DLSDCKRLKSLPS-SLYR-LKSLGVLSLCGCSN--L-QRLPECLGQLSSPITFNLAKTN-IE-RIPESIIQLFVSGYLLL  277 (312)
Q Consensus       205 ~l~~n~~~~~~~~-~l~~-l~~L~~L~l~~~~~--~-~~~p~~~~~l~~L~~L~l~~n~-l~-~~~~~l~~~~~L~~L~l  277 (312)
                      ++++|........ .+.. -+.|..|+++++.-  . ..+..-..++++|.+||++.|. ++ .+-..+.+++.|++|++
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            9999976654321 1111 23688999998732  2 2344445688999999999875 55 55567789999999999


Q ss_pred             cCCcCCccccccccCCCCchhHH
Q 047461          278 SYGIVEDTLRIQHTNHTPAVRWQ  300 (312)
Q Consensus       278 ~~n~~~~~~~~~~~~~~~~~~~~  300 (312)
                      +.|........-++...|.+..+
T Consensus       346 sRCY~i~p~~~~~l~s~psl~yL  368 (419)
T KOG2120|consen  346 SRCYDIIPETLLELNSKPSLVYL  368 (419)
T ss_pred             hhhcCCChHHeeeeccCcceEEE
Confidence            99999877777777777776543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.05  E-value=6.8e-07  Score=80.54  Aligned_cols=167  Identities=25%  Similarity=0.266  Sum_probs=113.6

Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCE
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGY  203 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~  203 (312)
                      .++.+.+|+.|++.+|. +..+...+..+++|++|++++| .+..+.... ...|+.|++.+|.++.+.. +..+..|+.
T Consensus        90 ~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~  166 (414)
T KOG0531|consen   90 HLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKL  166 (414)
T ss_pred             ccccccceeeeeccccc-hhhcccchhhhhcchheecccc-ccccccchhhccchhhheeccCcchhccC-Cccchhhhc
Confidence            46778899999999998 4444443668999999999994 455555444 5679999999999987743 334788999


Q ss_pred             EecCCCCCCCcCc-hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccC--CCcEEEecCC
Q 047461          204 LDLSDCKRLKSLP-SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLF--VSGYLLLSYG  280 (312)
Q Consensus       204 L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~--~L~~L~l~~n  280 (312)
                      +++++|.+...-+ . ...+.+++.+.+.+|.+...-  .+..+..+..+++..|.++.+-. +....  .|+.+++++|
T Consensus       167 l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n  242 (414)
T KOG0531|consen  167 LDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGN  242 (414)
T ss_pred             ccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccC
Confidence            9999998765443 2 467888999999887553321  22233445555888888874422 22233  3899999999


Q ss_pred             cCCcc-ccccccCCCCchh
Q 047461          281 IVEDT-LRIQHTNHTPAVR  298 (312)
Q Consensus       281 ~~~~~-~~~~~~~~~~~~~  298 (312)
                      ++... ..+..+..++.+.
T Consensus       243 ~i~~~~~~~~~~~~l~~l~  261 (414)
T KOG0531|consen  243 RISRSPEGLENLKNLPVLD  261 (414)
T ss_pred             ccccccccccccccccccc
Confidence            88765 3344333444433

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=6.7e-07  Score=73.90  Aligned_cols=131  Identities=14%  Similarity=0.032  Sum_probs=64.8

Q ss_pred             cCCcEEEcCCCCcCcc-ccccccCCCcCcEEeccCCCCC-----CCCCccccCCCCeEEcCCcccccc---hHHHHhcCC
Q 047461          130 NKLVTLNLRGSKSLKS-LPSGIFNLEFLTKLDLSGCSKL-----KRLPEISSGNISWLFLRGIAIEEL---PSSIERLLR  200 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l-----~~~p~~~~~~L~~L~l~~~~l~~l---~~~~~~l~~  200 (312)
                      .+|+.|.+.+..+... ....+..+|+++.|.++.|+.=     ...-....+.++.+++..|.....   -.....+++
T Consensus       121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn  200 (418)
T KOG2982|consen  121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPN  200 (418)
T ss_pred             cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence            3677777776654322 2233445666777766664210     000011124555666665543321   112234566


Q ss_pred             CCEEecCCCCCCCcCc-hhhhcCCCCCeEeccCCCCCC-cchhhhhCCCCCcEEeccCCCCc
Q 047461          201 LGYLDLSDCKRLKSLP-SSLYRLKSLGVLSLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       201 L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      +..+-+..|.+.+.-. ...-.++.+..|+++.+++.. ...+.+.++++|..|.++++++.
T Consensus       201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            6666666665433211 223344555556666554432 22345556666777777766654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.01  E-value=6.8e-06  Score=77.90  Aligned_cols=150  Identities=24%  Similarity=0.217  Sum_probs=90.6

Q ss_pred             cCCcEEEcCCCCcC-ccccccccC-CCcCcEEeccCCCCCCC-CCcc--ccCCCCeEEcCCcccccchHHHHhcCCCCEE
Q 047461          130 NKLVTLNLRGSKSL-KSLPSGIFN-LEFLTKLDLSGCSKLKR-LPEI--SSGNISWLFLRGIAIEELPSSIERLLRLGYL  204 (312)
Q Consensus       130 ~~L~~L~l~~~~~~-~~~~~~l~~-~~~L~~L~l~~~~~l~~-~p~~--~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L  204 (312)
                      .+|++|++++.... ...|..++. +|+|+.|.+++-..... +...  .+++|..||+++.+++.+ .+++.+.+|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            47999999886533 334444554 78899998887332211 1111  146888888888888877 667777788777


Q ss_pred             ecCCCCCCC-cCchhhhcCCCCCeEeccCCCCCCc------chhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEE
Q 047461          205 DLSDCKRLK-SLPSSLYRLKSLGVLSLCGCSNLQR------LPECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYL  275 (312)
Q Consensus       205 ~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~------~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L  275 (312)
                      .+.+-.+.. ..-..++++++|+.||+|.-.....      .-+.-..+|.|+.||.+++.+.  .+...+...|+|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            776544433 2233577788888888876432221      1122234677888888777766  232334556666655


Q ss_pred             EecCC
Q 047461          276 LLSYG  280 (312)
Q Consensus       276 ~l~~n  280 (312)
                      ..-+|
T Consensus       281 ~~~~~  285 (699)
T KOG3665|consen  281 AALDC  285 (699)
T ss_pred             hhhhh
Confidence            54433

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.01  E-value=1.7e-06  Score=63.39  Aligned_cols=103  Identities=18%  Similarity=0.196  Sum_probs=54.8

Q ss_pred             CeEEcCCcccccchHHHHh---cCCCCEEecCCCCCCCcCchhhhc-CCCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461          179 SWLFLRGIAIEELPSSIER---LLRLGYLDLSDCKRLKSLPSSLYR-LKSLGVLSLCGCSNLQRLPECLGQLSSPITFNL  254 (312)
Q Consensus       179 ~~L~l~~~~l~~l~~~~~~---l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  254 (312)
                      ..+++++|.+..++.....   ...|...++++|.+ .++|..+.. .+...++++.+|. ..++|..+..++.|+.|++
T Consensus        30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             hhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhccc
Confidence            3444555544444433322   22344445666543 333433332 2345666666543 3445666666666666666


Q ss_pred             cCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461          255 AKTNIERIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       255 ~~n~l~~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                      +.|.+...|+.+..+.++-+|+..+|...
T Consensus       108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  108 RFNPLNAEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccCccccchHHHHHHHhHHHhcCCCCccc
Confidence            66666666666655666666666666553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.95  E-value=5.9e-05  Score=66.43  Aligned_cols=132  Identities=23%  Similarity=0.356  Sum_probs=77.3

Q ss_pred             cCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcE
Q 047461           79 AEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTK  158 (312)
Q Consensus        79 l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~  158 (312)
                      +.+++.|++++|.++.+|.   --.+|+.|....|.++ ..+|.  .+.  ++|++|.+++|.....+|.      +|+.
T Consensus        51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nL-tsLP~--~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNL-TTLPG--SIP--EGLEKLTVCHCPEISGLPE------SVRS  116 (426)
T ss_pred             hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCc-ccCCc--hhh--hhhhheEccCccccccccc------ccce
Confidence            5678888888888887772   1224665555554442 33333  332  4789999998854555554      3666


Q ss_pred             EeccCCC--CCCCCCccccCCCCeEEcCCccc---ccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCC
Q 047461          159 LDLSGCS--KLKRLPEISSGNISWLFLRGIAI---EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC  233 (312)
Q Consensus       159 L~l~~~~--~l~~~p~~~~~~L~~L~l~~~~l---~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  233 (312)
                      |++..+.  .+..+|    +.|+.|.+.++..   ..+|..  -.++|++|++++|.... +|..+.  .+|+.|.++.+
T Consensus       117 L~L~~n~~~~L~~LP----ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIKNVP----NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCcccccCc----chHhheeccccccccccccccc--cCCcccEEEecCCCccc-Cccccc--ccCcEEEeccc
Confidence            6666522  234444    5788887754321   112211  12478999998877432 333222  37888888764

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=1.8e-05  Score=46.65  Aligned_cols=40  Identities=33%  Similarity=0.368  Sum_probs=25.4

Q ss_pred             CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc
Q 047461          223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP  263 (312)
Q Consensus       223 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  263 (312)
                      ++|++|++++|.+. .+|..++++++|+.|++++|+++.++
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35677777776554 45656677777777777777776554

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.91  E-value=7.7e-06  Score=77.54  Aligned_cols=144  Identities=19%  Similarity=0.170  Sum_probs=80.9

Q ss_pred             CCcCcEEeccCCCCCCC-CCcc---ccCCCCeEEcCCcccc--cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCC
Q 047461          153 LEFLTKLDLSGCSKLKR-LPEI---SSGNISWLFLRGIAIE--ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG  226 (312)
Q Consensus       153 ~~~L~~L~l~~~~~l~~-~p~~---~~~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  226 (312)
                      -.+|++|++++...... .|..   ..|.|+.|.+.+-.+.  ++.....++++|..||++++.+...  ..++.+++|+
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq  198 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQ  198 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHH
Confidence            35677777776433321 1111   1467777777765554  3444456677777777777665433  4566777777


Q ss_pred             eEeccCCCCCC-cchhhhhCCCCCcEEeccCCCCcccch-------HhhccCCCcEEEecCCcCCccccccccCCCCchh
Q 047461          227 VLSLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIERIPE-------SIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVR  298 (312)
Q Consensus       227 ~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~~~-------~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  298 (312)
                      .|.+.+-.+.. .--..+..+++|++||+|..+....+.       +-..+|.|+.||.++..+.+..-...+..-|+++
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~  278 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ  278 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence            77776544332 223345567777777777755432221       1124677777777777665544433333334333

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.70  E-value=8.5e-06  Score=59.85  Aligned_cols=86  Identities=22%  Similarity=0.264  Sum_probs=66.1

Q ss_pred             CCCEEecCCCCCCC--cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEe
Q 047461          200 RLGYLDLSDCKRLK--SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLL  277 (312)
Q Consensus       200 ~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l  277 (312)
                      .+-.++|+.|++..  +.+..+.....|...++++|.+.+-.+.....++.++.|++++|.|+.+|..+..++.|+.|++
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl  107 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL  107 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence            35567888887643  3344455566788899999765443444445677899999999999999999999999999999


Q ss_pred             cCCcCCcc
Q 047461          278 SYGIVEDT  285 (312)
Q Consensus       278 ~~n~~~~~  285 (312)
                      +.|++...
T Consensus       108 ~~N~l~~~  115 (177)
T KOG4579|consen  108 RFNPLNAE  115 (177)
T ss_pred             ccCccccc
Confidence            99999653

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.64  E-value=6.2e-05  Score=59.02  Aligned_cols=82  Identities=23%  Similarity=0.177  Sum_probs=40.8

Q ss_pred             CCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc--hHhhccCCCcEEEe
Q 047461          200 RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP--ESIIQLFVSGYLLL  277 (312)
Q Consensus       200 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~l~~~~~L~~L~l  277 (312)
                      +...+|+++|.+...  ..+..++.|.+|.+++|++..--|.--..+++|..|.+.+|.|..+.  .-+..||+|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            344555555543221  11334455555666555554433333334455666666666555332  22445666666666


Q ss_pred             cCCcCC
Q 047461          278 SYGIVE  283 (312)
Q Consensus       278 ~~n~~~  283 (312)
                      -+|+++
T Consensus       121 l~Npv~  126 (233)
T KOG1644|consen  121 LGNPVE  126 (233)
T ss_pred             cCCchh
Confidence            666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=1e-05  Score=67.09  Aligned_cols=79  Identities=15%  Similarity=0.098  Sum_probs=50.5

Q ss_pred             CCCCCeEeccCCCCCC-cchhhhhCCCCCcEEeccCCCCccc--chHhhccCCCcEEEecCCcCCccc----c-ccccCC
Q 047461          222 LKSLGVLSLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIERI--PESIIQLFVSGYLLLSYGIVEDTL----R-IQHTNH  293 (312)
Q Consensus       222 l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~~~--~~~l~~~~~L~~L~l~~n~~~~~~----~-~~~~~~  293 (312)
                      ++++..+.+..|.+.. ..-+.+..++.+..|+++.+.|...  -+++.+++.|..|.++.+++.+..    + .-.+..
T Consensus       198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR  277 (418)
T KOG2982|consen  198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR  277 (418)
T ss_pred             cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence            4566666666664432 1223344566777889999988733  357889999999999999985421    1 222245


Q ss_pred             CCchhHH
Q 047461          294 TPAVRWQ  300 (312)
Q Consensus       294 ~~~~~~~  300 (312)
                      +++|+++
T Consensus       278 L~~v~vL  284 (418)
T KOG2982|consen  278 LTKVQVL  284 (418)
T ss_pred             ccceEEe
Confidence            6666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.61  E-value=8.2e-06  Score=66.80  Aligned_cols=131  Identities=13%  Similarity=-0.008  Sum_probs=85.2

Q ss_pred             CCcCcEEeccCCCCCCCCCccc-------cCCCCeEEcCCccccc--c----hHHHHhcCCCCEEecCCCCCCC----cC
Q 047461          153 LEFLTKLDLSGCSKLKRLPEIS-------SGNISWLFLRGIAIEE--L----PSSIERLLRLGYLDLSDCKRLK----SL  215 (312)
Q Consensus       153 ~~~L~~L~l~~~~~l~~~p~~~-------~~~L~~L~l~~~~l~~--l----~~~~~~l~~L~~L~l~~n~~~~----~~  215 (312)
                      -|.|+......| .+...|...       ...|+++.+..|+|..  +    ...+..+.+|+.||+..|.++-    .+
T Consensus       156 kp~Le~vicgrN-Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L  234 (388)
T COG5238         156 KPKLEVVICGRN-RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL  234 (388)
T ss_pred             CCCceEEEeccc-hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence            456666666663 333322211       2478888888887762  1    2245678899999999987643    24


Q ss_pred             chhhhcCCCCCeEeccCCCCCCcchhhh----h--CCCCCcEEeccCCCCc-------ccchH-hhccCCCcEEEecCCc
Q 047461          216 PSSLYRLKSLGVLSLCGCSNLQRLPECL----G--QLSSPITFNLAKTNIE-------RIPES-IIQLFVSGYLLLSYGI  281 (312)
Q Consensus       216 ~~~l~~l~~L~~L~l~~~~~~~~~p~~~----~--~l~~L~~L~l~~n~l~-------~~~~~-l~~~~~L~~L~l~~n~  281 (312)
                      ...+..|+.|+.|++.+|-+...-...+    .  ..++|+.|...+|...       .++.. -.++|-|..|.+.+|.
T Consensus       235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr  314 (388)
T COG5238         235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR  314 (388)
T ss_pred             HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence            4567778889999999997765433222    1  3578889998888743       23332 2467778888888887


Q ss_pred             CCc
Q 047461          282 VED  284 (312)
Q Consensus       282 ~~~  284 (312)
                      +..
T Consensus       315 ~~E  317 (388)
T COG5238         315 IKE  317 (388)
T ss_pred             chh
Confidence            743

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.55  E-value=3.5e-06  Score=72.76  Aligned_cols=150  Identities=21%  Similarity=0.191  Sum_probs=104.0

Q ss_pred             CCcCCcEEEcCCCCcCccccc-cc-cCCCcCcEEeccCCCCCCCCCccc----cCCCCeEEcCCcccc---cchHHHHhc
Q 047461          128 RLNKLVTLNLRGSKSLKSLPS-GI-FNLEFLTKLDLSGCSKLKRLPEIS----SGNISWLFLRGIAIE---ELPSSIERL  198 (312)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~-~l-~~~~~L~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~~l~---~l~~~~~~l  198 (312)
                      .+.+|+.|..+++...+..+- ++ ....+|+.+.++.|..++..-...    .+.|+.+++..+...   .+.+...++
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C  371 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC  371 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence            467889999988775554321 23 357899999999998665432221    368999999888544   244445578


Q ss_pred             CCCCEEecCCCCCCCcC-----chhhhcCCCCCeEeccCCCCC-CcchhhhhCCCCCcEEeccCCC-Cc--ccchHhhcc
Q 047461          199 LRLGYLDLSDCKRLKSL-----PSSLYRLKSLGVLSLCGCSNL-QRLPECLGQLSSPITFNLAKTN-IE--RIPESIIQL  269 (312)
Q Consensus       199 ~~L~~L~l~~n~~~~~~-----~~~l~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~n~-l~--~~~~~l~~~  269 (312)
                      +.|+.+.+++|...++.     ...-..+..++.+.+++|..+ +...+.+..+++|+.+++-.+. ++  .+.....++
T Consensus       372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l  451 (483)
T KOG4341|consen  372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHL  451 (483)
T ss_pred             chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence            89999999998765543     233345667999999998765 4556677888999999998876 33  344455677


Q ss_pred             CCCcEEEe
Q 047461          270 FVSGYLLL  277 (312)
Q Consensus       270 ~~L~~L~l  277 (312)
                      |+++..-+
T Consensus       452 p~i~v~a~  459 (483)
T KOG4341|consen  452 PNIKVHAY  459 (483)
T ss_pred             ccceehhh
Confidence            88775543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.22  E-value=0.00056  Score=53.82  Aligned_cols=102  Identities=16%  Similarity=0.183  Sum_probs=57.7

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcc-cCCCchhc--chhhcccccccCCCCCCcCCCcCCcE
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVK-HYSKLNQI--IHAACHKLIAKIPNPTLMPRLNKLVT  134 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~l~~L~~l--~~~~~~~~~~~~~~~~~~~~l~~L~~  134 (312)
                      .+...+++++|.+..++..-.++.|..|.+++|.++.+...+. .+++|+.|  ..+..    .++.....+..+|+|++
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi----~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI----QELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch----hhhhhcchhccCCccce
Confidence            4567778888887777666688888888888888887654442 34555532  22221    12211123556667777


Q ss_pred             EEcCCCCcCcccc---ccccCCCcCcEEeccC
Q 047461          135 LNLRGSKSLKSLP---SGIFNLEFLTKLDLSG  163 (312)
Q Consensus       135 L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~  163 (312)
                      |.+-+|.....--   ..+..+++|+.||...
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7766665322210   0123445555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.0006  Score=55.72  Aligned_cols=35  Identities=26%  Similarity=0.186  Sum_probs=15.2

Q ss_pred             CCCeEEcCCc--ccc-cchHHHHhcCCCCEEecCCCCC
Q 047461          177 NISWLFLRGI--AIE-ELPSSIERLLRLGYLDLSDCKR  211 (312)
Q Consensus       177 ~L~~L~l~~~--~l~-~l~~~~~~l~~L~~L~l~~n~~  211 (312)
                      +|+.|.++.|  .+. +++.....+++|+++++++|++
T Consensus        66 ~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   66 KLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             hhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            5555555554  222 2333333334555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.83  E-value=0.00043  Score=56.56  Aligned_cols=102  Identities=21%  Similarity=0.220  Sum_probs=54.2

Q ss_pred             CCCCeEEcCCcccccchHHHHhcCCCCEEecCCC--CCCCcCchhhhcCCCCCeEeccCCCCCC--cchhhhhCCCCCcE
Q 047461          176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC--KRLKSLPSSLYRLKSLGVLSLCGCSNLQ--RLPECLGQLSSPIT  251 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n--~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~  251 (312)
                      ..++.+.+.+.+++.+. .+..+++|++|.++.|  ...+.++.....+++|+++.+++|.+..  .++ .+..+.+|..
T Consensus        43 ~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~  120 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKS  120 (260)
T ss_pred             cchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhh
Confidence            35555555555555431 1234566777777776  4444444434445677777777765431  221 2334556666


Q ss_pred             EeccCCCCcccc----hHhhccCCCcEEEecC
Q 047461          252 FNLAKTNIERIP----ESIIQLFVSGYLLLSY  279 (312)
Q Consensus       252 L~l~~n~l~~~~----~~l~~~~~L~~L~l~~  279 (312)
                      |++.+|..+.+-    ..+.-+++|++|+-.+
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            777666655322    1344556666655333

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.59  E-value=0.00039  Score=57.41  Aligned_cols=97  Identities=24%  Similarity=0.098  Sum_probs=63.3

Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCC-cchhhhhCCCCCcEEecc
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQ-RLPECLGQLSSPITFNLA  255 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~  255 (312)
                      +.+.|+..+|+++++. ....|+.|+.|.|+-|++.+.-|  +..++.|+.|+|+.|.+.. .-...+.++++|+.|-|.
T Consensus        20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            5567777777777663 23457778888888877655433  5577788888887765532 112456677888888888


Q ss_pred             CCCCc-ccc-----hHhhccCCCcEEE
Q 047461          256 KTNIE-RIP-----ESIIQLFVSGYLL  276 (312)
Q Consensus       256 ~n~l~-~~~-----~~l~~~~~L~~L~  276 (312)
                      .|+-. .-+     ..+..+|+|++||
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhcc
Confidence            77643 111     2456677777776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.00022  Score=58.81  Aligned_cols=98  Identities=24%  Similarity=0.254  Sum_probs=69.5

Q ss_pred             CcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchH--HHHhcCCCCEEe
Q 047461          129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPS--SIERLLRLGYLD  205 (312)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~  205 (312)
                      +.+.++|+.++|. +.++.- +.+++.|+.|.++-|. ++.+.... +++|++|+|..|.|.++-.  -+.++++|+.|.
T Consensus        18 l~~vkKLNcwg~~-L~DIsi-c~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   18 LENVKKLNCWGCG-LDDISI-CEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHHhhhhcccCCC-ccHHHH-HHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            4467888888887 444332 5578889999999844 44444443 6789999999998887653  366788899999


Q ss_pred             cCCCCCCCcCch-----hhhcCCCCCeEe
Q 047461          206 LSDCKRLKSLPS-----SLYRLKSLGVLS  229 (312)
Q Consensus       206 l~~n~~~~~~~~-----~l~~l~~L~~L~  229 (312)
                      |..|...+..+.     .+.-+++|++||
T Consensus        95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hccCCcccccchhHHHHHHHHcccchhcc
Confidence            988776664432     455677777776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.92  E-value=0.002  Score=59.12  Aligned_cols=15  Identities=27%  Similarity=-0.126  Sum_probs=8.1

Q ss_pred             hccCCCcEEEecCCc
Q 047461          267 IQLFVSGYLLLSYGI  281 (312)
Q Consensus       267 ~~~~~L~~L~l~~n~  281 (312)
                      ..++.++.+.+.++.
T Consensus       359 ~~~~~l~~~~l~~~~  373 (482)
T KOG1947|consen  359 RSCPKLTDLSLSYCG  373 (482)
T ss_pred             hcCCCcchhhhhhhh
Confidence            345555555555555

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.70  E-value=0.0037  Score=30.63  Aligned_cols=17  Identities=29%  Similarity=0.434  Sum_probs=8.6

Q ss_pred             CcEEeccCCCCcccchH
Q 047461          249 PITFNLAKTNIERIPES  265 (312)
Q Consensus       249 L~~L~l~~n~l~~~~~~  265 (312)
                      |+.|++++|.++.+|..
T Consensus         2 L~~Ldls~n~l~~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSS   18 (22)
T ss_dssp             ESEEEETSSEESEEGTT
T ss_pred             ccEEECCCCcCEeCChh
Confidence            44555555555544443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.31  E-value=0.013  Score=26.60  Aligned_cols=15  Identities=13%  Similarity=0.332  Sum_probs=6.0

Q ss_pred             CCcEEeccCCCCccc
Q 047461          248 SPITFNLAKTNIERI  262 (312)
Q Consensus       248 ~L~~L~l~~n~l~~~  262 (312)
                      +|+.|++++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            345555555555443

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.85  E-value=0.038  Score=50.68  Aligned_cols=128  Identities=25%  Similarity=0.184  Sum_probs=68.3

Q ss_pred             CCcCcEEeccCCCCCCCCC--ccc--cCCCCeEEcCCc--ccccc----hHHHHhcCCCCEEecCCCCC-CCcCchhhhc
Q 047461          153 LEFLTKLDLSGCSKLKRLP--EIS--SGNISWLFLRGI--AIEEL----PSSIERLLRLGYLDLSDCKR-LKSLPSSLYR  221 (312)
Q Consensus       153 ~~~L~~L~l~~~~~l~~~p--~~~--~~~L~~L~l~~~--~l~~l----~~~~~~l~~L~~L~l~~n~~-~~~~~~~l~~  221 (312)
                      .+.|+.+.+..|..+....  ...  .++|+.|+++++  .....    ......+.+|+.++++++.. ....-..+..
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5667777777665555421  111  467777777662  11111    12334456777777777663 3222222332


Q ss_pred             -CCCCCeEeccCCC-CCC-cchhhhhCCCCCcEEeccCCCCc---ccchHhhccCCCcEEEecCC
Q 047461          222 -LKSLGVLSLCGCS-NLQ-RLPECLGQLSSPITFNLAKTNIE---RIPESIIQLFVSGYLLLSYG  280 (312)
Q Consensus       222 -l~~L~~L~l~~~~-~~~-~~p~~~~~l~~L~~L~l~~n~l~---~~~~~l~~~~~L~~L~l~~n  280 (312)
                       +++|+.|.+.+|. +++ .+-....++++|++|+++.|...   .+......+++++.+.+...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~  331 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSL  331 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhc
Confidence             5677777776665 333 23334445677777777776532   23333445666655554444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.77  E-value=0.0051  Score=48.55  Aligned_cols=80  Identities=24%  Similarity=0.188  Sum_probs=37.7

Q ss_pred             CCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcc-hhhhh-CCCCCcEEeccCCC-Cc-ccchHhhccCCCcEEE
Q 047461          201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRL-PECLG-QLSSPITFNLAKTN-IE-RIPESIIQLFVSGYLL  276 (312)
Q Consensus       201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-p~~~~-~l~~L~~L~l~~n~-l~-~~~~~l~~~~~L~~L~  276 (312)
                      ++.+|-+++.+...--..+..+++++.+.+.+|.-.+.. -+.+. -.++|+.|+++.|+ || .--.++.++++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            344444444444443344445555555555555333221 11111 22556666666554 55 2224555666666666


Q ss_pred             ecCC
Q 047461          277 LSYG  280 (312)
Q Consensus       277 l~~n  280 (312)
                      +++=
T Consensus       183 l~~l  186 (221)
T KOG3864|consen  183 LYDL  186 (221)
T ss_pred             hcCc
Confidence            5553

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.31  E-value=0.023  Score=27.72  Aligned_cols=20  Identities=10%  Similarity=0.272  Sum_probs=12.3

Q ss_pred             CccEEeCCCCcccchhhhcc
Q 047461           81 KLMLLEVPDSDIKRLWDCVK  100 (312)
Q Consensus        81 ~L~~L~l~~~~~~~~~~~~~  100 (312)
                      +|++|++++|.++.+|..++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35667777776666665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.07  E-value=0.23  Score=36.48  Aligned_cols=37  Identities=11%  Similarity=0.217  Sum_probs=15.7

Q ss_pred             CcCCCcCCcEEEcCCCCcCccccc-cccCCCcCcEEeccC
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPS-GIFNLEFLTKLDLSG  163 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~  163 (312)
                      .+..+.+|+.+.+.. . ...++. .+...++++.+.+..
T Consensus         7 ~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESS
T ss_pred             HHhCCCCCCEEEECC-C-eeEeChhhcccccccccccccc
Confidence            455666777777664 2 333332 344455666666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.60  E-value=0.14  Score=25.95  Aligned_cols=21  Identities=14%  Similarity=0.384  Sum_probs=15.7

Q ss_pred             CCCCcEEeccCCCCcccchHh
Q 047461          246 LSSPITFNLAKTNIERIPESI  266 (312)
Q Consensus       246 l~~L~~L~l~~n~l~~~~~~l  266 (312)
                      +++|+.|++++|.|+.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356788888888888777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.60  E-value=0.14  Score=25.95  Aligned_cols=21  Identities=14%  Similarity=0.384  Sum_probs=15.7

Q ss_pred             CCCCcEEeccCCCCcccchHh
Q 047461          246 LSSPITFNLAKTNIERIPESI  266 (312)
Q Consensus       246 l~~L~~L~l~~n~l~~~~~~l  266 (312)
                      +++|+.|++++|.|+.+|+..
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356788888888888777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=91.57  E-value=1.1  Score=32.85  Aligned_cols=75  Identities=16%  Similarity=0.292  Sum_probs=32.1

Q ss_pred             cchhcCCCCCcEEEeeccccccccccccccC-CCCCC-CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccchh-
Q 047461           22 SNTFTKMPKLRFLKFYSSLFNGENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRLW-   96 (312)
Q Consensus        22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~-   96 (312)
                      ...|..+++|+.+.+....        ..+. ..+.. .+|+.+.+... +..++...  ....++.+.+.. .+..++ 
T Consensus         5 ~~~F~~~~~l~~i~~~~~~--------~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~   74 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPNTI--------KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD   74 (129)
T ss_dssp             TTTTTT-TT--EEEETST----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T
T ss_pred             HHHHhCCCCCCEEEECCCe--------eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc
Confidence            3567777778887776421        1121 22233 56777777663 44444422  455667777754 333333 


Q ss_pred             hhcccCCCch
Q 047461           97 DCVKHYSKLN  106 (312)
Q Consensus        97 ~~~~~l~~L~  106 (312)
                      ..+..+++++
T Consensus        75 ~~F~~~~~l~   84 (129)
T PF13306_consen   75 NAFSNCTNLK   84 (129)
T ss_dssp             TTTTT-TTEC
T ss_pred             cccccccccc
Confidence            2233344444

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.45  E-value=0.0086  Score=54.73  Aligned_cols=160  Identities=25%  Similarity=0.237  Sum_probs=83.4

Q ss_pred             CcCCCcCCcEEEcCCCCcCcccc----ccccCC-CcCcEEeccCCCCCCCCCccc------cCCCCeEEcCCccccc---
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLP----SGIFNL-EFLTKLDLSGCSKLKRLPEIS------SGNISWLFLRGIAIEE---  190 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~-~~L~~L~l~~~~~l~~~p~~~------~~~L~~L~l~~~~l~~---  190 (312)
                      .+...+.|..|++++|.+...--    ..+... ..+++|++..|.....-....      ...++.+++..|.+..   
T Consensus       110 ~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~  189 (478)
T KOG4308|consen  110 ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL  189 (478)
T ss_pred             HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh
Confidence            34445566667777666432111    111121 345555555544322110000      2456666666665531   


Q ss_pred             --chHHHH----hcCCCCEEecCCCCCCCc----CchhhhcCCC-CCeEeccCCCCCCc----chhhhhCC-CCCcEEec
Q 047461          191 --LPSSIE----RLLRLGYLDLSDCKRLKS----LPSSLYRLKS-LGVLSLCGCSNLQR----LPECLGQL-SSPITFNL  254 (312)
Q Consensus       191 --l~~~~~----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~-L~~L~l~~~~~~~~----~p~~~~~l-~~L~~L~l  254 (312)
                        ++..+.    ...++++|.+.+|.++..    +...+...++ +..+++..|.+.+.    ....+..+ ..++++++
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l  269 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL  269 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence              222233    355677777777665432    2223444444 55677766654432    33444445 56777888


Q ss_pred             cCCCCc-----ccchHhhccCCCcEEEecCCcCCc
Q 047461          255 AKTNIE-----RIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       255 ~~n~l~-----~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +.|.++     .+...+..++.++++.++.|++.+
T Consensus       270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            888776     334455667777888888887754

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=87.14  E-value=0.4  Score=24.38  Aligned_cols=18  Identities=22%  Similarity=0.469  Sum_probs=14.3

Q ss_pred             CCCcEEeccCCCCcccch
Q 047461          247 SSPITFNLAKTNIERIPE  264 (312)
Q Consensus       247 ~~L~~L~l~~n~l~~~~~  264 (312)
                      ++|+.|++++|+++.+|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            457888888888888876

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.74  E-value=0.3  Score=38.88  Aligned_cols=77  Identities=16%  Similarity=-0.034  Sum_probs=57.8

Q ss_pred             CCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCC-Ccc-cchHh-hccCCCcEEEecCCcCCccccccccCCCCchhHH
Q 047461          224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTN-IER-IPESI-IQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQ  300 (312)
Q Consensus       224 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~~-~~~~l-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  300 (312)
                      .++.++-+++.+..+--+.+..+++++.|.+.+|. +.. --+.+ +-.++|+.|+|++|+-.+....+++..+++++.+
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            47888988888888878888899999999998876 221 00111 2468999999999988777777777777777654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.20  E-value=0.62  Score=22.96  Aligned_cols=11  Identities=27%  Similarity=0.389  Sum_probs=3.5

Q ss_pred             CcEEeccCCCC
Q 047461          249 PITFNLAKTNI  259 (312)
Q Consensus       249 L~~L~l~~n~l  259 (312)
                      |+.|++++|.|
T Consensus         4 L~~L~l~~n~i   14 (24)
T PF13516_consen    4 LETLDLSNNQI   14 (24)
T ss_dssp             -SEEE-TSSBE
T ss_pred             CCEEEccCCcC
Confidence            33444444333

...

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=80.78  E-value=0.68  Score=23.40  Aligned_cols=18  Identities=17%  Similarity=-0.392  Sum_probs=10.7

Q ss_pred             cCCCcEEEecCCcCCccc
Q 047461          269 LFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       269 ~~~L~~L~l~~n~~~~~~  286 (312)
                      +++|++|+|++|+...+.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            456777777777544433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	312
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		5e-08
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/126 (33%), Positives = 59/126 (46%), Gaps = 22/126 (17%)
Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 182
           P  +  L  L +L +R S  L +L   I +L  L +LDL GC+ L+  P I  G      
Sbjct: 199 PASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR----- 252
Query: 183 LRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPEC 242
                     + ++RL+      L DC  L +LP  ++RL  L  L L GC NL RLP  
Sbjct: 253 ----------APLKRLI------LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Query: 243 LGQLSS 248
           + QL +
Sbjct: 297 IAQLPA 302

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 7/92 (7%)
Query: 139 GSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLPEISSG---NISWLFLRGIAIEELPSS 194
           GS  L +LP G+F+ L  LT LDL G ++L  LP        ++  LF+    + ELP  
Sbjct: 72  GSNQLGALPVGVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRG 130
Query: 195 IERLLRLGYLDLSDCKRLKSLPSSLY-RLKSL 225
           IERL  L +L L D  +LKS+P   + RL SL
Sbjct: 131 IERLTHLTHLAL-DQNQLKSIPHGAFDRLSSL 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	312
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-24
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-11
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	8e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 5e-25
 Identities = 41/211 (19%), Positives = 68/211 (32%), Gaps = 18/211 (8%)

Query: 70  LKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL 129
           L+     LS  +       D +         + +     I     + +    +       
Sbjct: 25  LRPYHDVLS--QWQRHYNADRNRWHSAWRQANSNNPQ--IETRTGRALKATADLLEDATQ 80

Query: 130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP-EISS-GNISWLFLRGIA 187
              V L LR    L   P   F L  L  + +     L  LP  +     +  L L    
Sbjct: 81  PGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP 138

Query: 188 IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYR---------LKSLGVLSLCGCSNLQR 238
           +  LP+SI  L RL  L +  C  L  LP  L           L +L  L L   + ++ 
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL-EWTGIRS 197

Query: 239 LPECLGQLSSPITFNLAKTNIERIPESIIQL 269
           LP  +  L +  +  +  + +  +  +I  L
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHL 228

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 98.5 bits (246), Expect = 6e-24
 Identities = 56/221 (25%), Positives = 81/221 (36%), Gaps = 35/221 (15%)

Query: 61  KYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLWDCVKHYSKL-------NQIIH-- 110
             L     PL   P        L  + +  + +  L D ++ ++ L       N +    
Sbjct: 84  VALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALP 143

Query: 111 --------------AACHKL------IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGI 150
                          AC +L      +A          L  L +L L  +  ++SLP+ I
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASI 202

Query: 151 FNLEFLTKLDLSGCSKLKRLP-EISS-GNISWLFLRGI-AIEELPSSIERLLRLGYLDLS 207
            NL+ L  L +     L  L   I     +  L LRG  A+   P        L  L L 
Sbjct: 203 ANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261

Query: 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSS 248
           DC  L +LP  ++RL  L  L L GC NL RLP  + QL +
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 95.4 bits (238), Expect = 9e-23
 Identities = 46/236 (19%), Positives = 85/236 (36%), Gaps = 23/236 (9%)

Query: 38  SSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPS---NLSAEKLMLLEVPDSDIKR 94
              +N +     S  +       +     G  LK+      + +    + LE+    + +
Sbjct: 36  QRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ 95

Query: 95  LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLE 154
             D     S L  +   A    + ++P+   M +   L TL L  +  L++LP+ I +L 
Sbjct: 96  FPDQAFRLSHLQHMTIDAAG--LMELPDT--MQQFAGLETLTLARNP-LRALPASIASLN 150

Query: 155 FLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKS 214
            L +L +  C +L  LPE             +A  +     + L+ L  L L     ++S
Sbjct: 151 RLRELSIRACPELTELPE------------PLASTDASGEHQGLVNLQSLRLEWTG-IRS 197

Query: 215 LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTN-IERIPESIIQL 269
           LP+S+  L++L  L +     L  L   +  L      +L     +   P      
Sbjct: 198 LPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.9 bits (234), Expect = 3e-22
 Identities = 28/143 (19%), Positives = 50/143 (34%), Gaps = 6/143 (4%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAI 188
            +    L  +GS +L+     +   +     D +      R    +  N       G A+
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN--NPQIETRTGRAL 68

Query: 189 EELPSSIERL--LRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQL 246
           +     +E         L+L     L   P   +RL  L  +++     L  LP+ + Q 
Sbjct: 69  KATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQF 126

Query: 247 SSPITFNLAKTNIERIPESIIQL 269
           +   T  LA+  +  +P SI  L
Sbjct: 127 AGLETLTLARNPLRALPASIASL 149

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 4e-20
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 6/125 (4%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNIS---WLFLR 184
            L  L +L +R S  L +L   I +L  L +LDL GC+ L+  P    G  +    L L+
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRLILK 261

Query: 185 GI-AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL 243
               +  LP  I RL +L  LDL  C  L  LPS + +L +  ++ +      Q      
Sbjct: 262 DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRP 321

Query: 244 GQLSS 248
               +
Sbjct: 322 VARPA 326

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 9/103 (8%), Positives = 22/103 (21%), Gaps = 21/103 (20%)

Query: 188 IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGV-------------------L 228
           +               L       L+     L + +                       +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQI 60

Query: 229 SLCGCSNLQRLPECLGQLSSP--ITFNLAKTNIERIPESIIQL 269
                  L+   + L   + P  +   L    + + P+   +L
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRL 103

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 27/182 (14%)

Query: 106 NQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGC 164
           N+I           I       +     T+ L  ++ ++  P+ +F     ++ + LS  
Sbjct: 654 NKI-----GSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN 707

Query: 165 SKLKRLPEISSG----------NISWLFLRGIAIEELPSSIE--RLLRLGYLDLSDCKRL 212
             +  +PE S             ++ + LR   +  L        L  L  +D+S     
Sbjct: 708 -LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CF 765

Query: 213 KSLPSSLYRLKSLGVLSLCGCSNLQR------LPECLGQLSSPITFNLAKTNIERIPESI 266
            S P+       L    +    + +        P  +    S I   +   +I ++ E +
Sbjct: 766 SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL 825

Query: 267 IQ 268
             
Sbjct: 826 TP 827

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 20/170 (11%), Positives = 47/170 (27%), Gaps = 10/170 (5%)

Query: 126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRG 185
           +    ++  L+L G  +   +P  I  L  L  L             +         +  
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSE 377

Query: 186 IAIEELPSSIERLL-----RLGYLDLSDCKRLKSL---PSSLYRLKSLGVLSLCGCSN-L 236
                +    +++      RL   DL      ++    P       SL    +   +N +
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI 437

Query: 237 QRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTL 286
             + + + +L+       A +       ++     +      Y   E + 
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.9 bits (145), Expect = 4e-10
 Identities = 20/170 (11%), Positives = 46/170 (27%), Gaps = 20/170 (11%)

Query: 123 PTLMPRLNKLVTLNLRG---------SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI 173
           P  +  L +L +LN+                 L         +    +     L+  P  
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPAS 566

Query: 174 SS----GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSL-YRLKSLGVL 228
           +S      +  L      +  L  +    ++L  L L    +++ +P         +  L
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGL 624

Query: 229 SLCGCSNLQRLPEC--LGQLSSPITFNLAKTNIERIPESIIQLFVSGYLL 276
                  L+ +P       +    + + +   I     +I         +
Sbjct: 625 GFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.5 bits (144), Expect = 4e-10
 Identities = 29/183 (15%), Positives = 55/183 (30%), Gaps = 38/183 (20%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPS--GIFNLEFLTKLDLSGCSKLKRLPEISS-GNIS 179
                   K+    +  +  L+  P+   +  +  L  LD     K++ L    +   ++
Sbjct: 541 ADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLT 598

Query: 180 WLFLRGIAIEELPSSIERLLR-LGYLDLSDCKRLKSLPS--SLYRLKSLGVLSL------ 230
            L L    IEE+P         +  L  S  K LK +P+  +   +  +G +        
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 231 ------------CGCSNLQRL-----------PECLGQLSSPITFNLAKTNIERIPESII 267
                           N   +            E     S   T  L+   +  IPE+ +
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL 717

Query: 268 QLF 270
           +  
Sbjct: 718 KPK 720

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 6e-10
 Identities = 24/179 (13%), Positives = 55/179 (30%), Gaps = 26/179 (14%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLS-----GCSKLKRLP 171
                       L   ++   +    +      +   + L   DL         ++K + 
Sbjct: 359 ETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418

Query: 172 EISSGNISWLFLRGI--AIEELPSSIERLLRLGYLDLSDCK------------------- 210
           + S  ++    +  +   I  +  +I+RL +L  +  ++                     
Sbjct: 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478

Query: 211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQL 269
           + ++   S   LK L  + L  C N+ +LP+ L  L    + N+A        +     
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADW 537

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 20/147 (13%), Positives = 52/147 (35%), Gaps = 5/147 (3%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIA 187
           +L K   + ++  ++ + +            LD             +  +++W F + + 
Sbjct: 250 KLTKDANVPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELD 309

Query: 188 I--EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQ 245
           +  ++    ++   R+  L L+       +P ++ +L  L VLS  G  +        G 
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF-GTHSETVSGRLFGD 368

Query: 246 LSSPITFNLAKTNIERIPESIIQLFVS 272
                  +  + +  RI     ++F+ 
Sbjct: 369 EELTPDMSEERKH--RIRMHYKKMFLD 393

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 37/188 (19%), Positives = 59/188 (31%), Gaps = 16/188 (8%)

Query: 124 TLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 183
           TL      L  L++  ++ L  LP     LE    ++     +L  LPE    ++  L +
Sbjct: 114 TLPELPASLKHLDVDNNQ-LTMLPELPALLE---YINADNN-QLTMLPE-LPTSLEVLSV 167

Query: 184 RGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSL---CGCSNLQRLP 240
           R   +  LP   E L  L   D+S    L+SLP+   R        +   C  + +  +P
Sbjct: 168 RNNQLTFLPELPESLEAL---DVSTN-LLESLPAVPVRNHHSEETEIFFRCRENRITHIP 223

Query: 241 ECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQ 300
           E +  L    T  L    +       +    +        I       Q        R  
Sbjct: 224 ENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH---RPL 280

Query: 301 EIWQEVWL 308
                 W 
Sbjct: 281 ADAVTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.3 bits (151), Expect = 5e-11
 Identities = 28/151 (18%), Positives = 51/151 (33%), Gaps = 14/151 (9%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSK---LKRLPEISSGNI 178
             ++P  N           ++    +  F+  +   K  L G ++   +  L E      
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQF 61

Query: 179 SWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR 238
           S L L  + +  LP ++   +    L+++    L SLP     L+ L          L  
Sbjct: 62  SELQLNRLNLSSLPDNLPPQIT--VLEITQN-ALISLPELPASLEYLDACDN----RLST 114

Query: 239 LPECLGQLSSPITFNLAKTNIERIPESIIQL 269
           LPE    L      ++    +  +PE    L
Sbjct: 115 LPELPASLKH---LDVDNNQLTMLPELPALL 142

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 2e-11
 Identities = 34/144 (23%), Positives = 57/144 (39%), Gaps = 13/144 (9%)

Query: 130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIE 189
           N  +   LR S +L  +P    N++  T+   +     +  P            R +A+ 
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP------GNGEQREMAVS 63

Query: 190 ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSP 249
            L   ++R      L+L++   L SLP     L+SL    +  C++L  LPE    L S 
Sbjct: 64  RLRDCLDRQAH--ELELNNLG-LSSLPELPPHLESL----VASCNSLTELPELPQSLKSL 116

Query: 250 ITFNLAKTNIERIPESIIQLFVSG 273
           +  N     +  +P  +  L VS 
Sbjct: 117 LVDNNNLKALSDLPPLLEYLGVSN 140

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 8e-10
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 10/145 (6%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAI 188
              L  +    ++ L+ LP  + NL FLT +       LK+LP+    ++  +      +
Sbjct: 172 PPSLEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNN-SLKKLPD-LPLSLESIVAGNNIL 227

Query: 189 EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSS 248
           EELP  ++ L  L  +   +   LK+LP     L++L V        L  LPE    L+ 
Sbjct: 228 EELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTF 281

Query: 249 PITFNLAKTNIERIPESIIQLFVSG 273
                   + +  +P ++  L  S 
Sbjct: 282 LDVSENIFSGLSELPPNLYYLNASS 306

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 33/147 (22%), Positives = 51/147 (34%), Gaps = 16/147 (10%)

Query: 124 TLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 183
           +L      L  LN+  +K L  LP+    LE   +L  S    L  +PE    N+  L +
Sbjct: 311 SLCDLPPSLEELNVSNNK-LIELPALPPRLE---RLIASFN-HLAEVPE-LPQNLKQLHV 364

Query: 184 RGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL 243
               + E P   E +      DL     L  +P     LK L V      + L+  P+  
Sbjct: 365 EYNPLREFPDIPESV-----EDLRMNSHLAEVPELPQNLKQLHV----ETNPLREFPDIP 415

Query: 244 GQLSS-PITFNLAKTNIERIPESIIQL 269
             +    +         E   E+  +L
Sbjct: 416 ESVEDLRMNSERVVDPYEFAHETTDKL 442

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 15/111 (13%)

Query: 171 PEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSL 230
             +S+  +         + E+P   E +        +  +  ++ P      + + V  L
Sbjct: 6   RNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 231 CGCS------------NLQRLPECLGQLSSPITFNLAKTNIERIPESIIQL 269
             C              L  LPE    L S      +  ++  +PE    L
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPELPQSL 113

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 23/178 (12%)

Query: 115 KLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEF--LTKLDLSGCSKLKRLPE 172
           K+  ++  P  +                 K+        +F  L K  ++   + K + +
Sbjct: 118 KVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK 177

Query: 173 ISSGNIS--WLFLRGIAIEELPSSIERLLRLGYLDLSDCK-------------------R 211
            S   +    +      I  +  ++ RL +L    + +                     +
Sbjct: 178 SSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

Query: 212 LKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQL 269
            K+       LK L  + +  C NL +LP  L  L      N+A        +     
Sbjct: 238 YKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDW 295

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 22/144 (15%), Positives = 46/144 (31%), Gaps = 17/144 (11%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIA 187
            L  L  + +    +L  LP+ +  L  +  ++++    +                    
Sbjct: 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQA--------- 297

Query: 188 IEELPSSIERLLRLGYLDLSDCKRLKSL--PSSLYRLKSLGVLSLCGCSNLQRLPECLGQ 245
                +      ++  + +     LK+    +SL ++K LG+L       L+      G 
Sbjct: 298 ----LADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYN-QLEGKLPAFGS 351

Query: 246 LSSPITFNLAKTNIERIPESIIQL 269
                + NLA   I  IP +    
Sbjct: 352 EIKLASLNLAYNQITEIPANFCGF 375

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 28/180 (15%), Positives = 55/180 (30%), Gaps = 30/180 (16%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRG-------SKSLKSLPSGIFNLEFLTKLDLSGCSKLKR 169
           +  IPN      ++ +  ++           K+   L    F    ++ ++LS   ++ +
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISK 447

Query: 170 LPEISSGNISWL--------FLRGI---AIEELPSSIERLLRLGYLDLSDCKRLKSLPSS 218
            P+      S L         L  I   ++++   + +    L  +DL   K L  L   
Sbjct: 448 FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDD 506

Query: 219 LY--RLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI-------ERIPESIIQL 269
                L  L  + L    +  + P      S+   F +               PE I   
Sbjct: 507 FRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 27/163 (16%), Positives = 54/163 (33%), Gaps = 22/163 (13%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS-- 179
                +   + ++NL  +  +   P  +F     L+ ++L G   L  +P+ S  + +  
Sbjct: 426 DPTPFKGINVSSINL-SNNQISKFPKELFSTGSPLSSINLMGN-MLTEIPKNSLKDENEN 483

Query: 180 --------WLFLRGIAIEELPSSIE--RLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLS 229
                    + LR   + +L        L  L  +DLS        P+      +L    
Sbjct: 484 FKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFG 542

Query: 230 LCGCSNLQR------LPECLGQLSSPITFNLAKTNIERIPESI 266
           +    + Q        PE +    S     +   +I ++ E I
Sbjct: 543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI 585

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 17/144 (11%), Positives = 35/144 (24%), Gaps = 19/144 (13%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIA 187
              ++  L+L G  +   +P  I  L  L  L L                      +   
Sbjct: 79  SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG-----------------EKVNE 121

Query: 188 IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLK--SLGVLSLCGCSNLQRLPECLGQ 245
               P  I   +             K+      R     L    +      + + +    
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181

Query: 246 LSSPITFNLAKTNIERIPESIIQL 269
                       NI  + +++++L
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRL 205

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 56.2 bits (136), Expect = 5e-09
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 22/158 (13%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS-GNISWL----- 181
             KL +LNL  ++ +  +P+      E +  L  +   KLK +P I    ++S +     
Sbjct: 352 EIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDF 409

Query: 182 ---FLRGI---AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS- 234
               +  +     + L  +  + + +  ++LS+ +  K           L  ++L G   
Sbjct: 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469

Query: 235 ------NLQRLPECLGQLSSPITFNLAKTNIERIPESI 266
                 +L+   E         + +L    + ++ +  
Sbjct: 470 TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 18/147 (12%), Positives = 38/147 (25%), Gaps = 19/147 (12%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG 176
           + K+ +      L  LV ++L  +      P+   N   L    +               
Sbjct: 500 LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDA------QGN 552

Query: 177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL 236
                        E P  I     L  L +     ++ +   +    ++ VL +    N+
Sbjct: 553 RTL---------REWPEGITLCPSLTQLQIGSN-DIRKVNEKI--TPNISVLDIKDNPNI 600

Query: 237 QRLPECLGQLSSPITFNLAKTNIERIP 263
                 +        + L     + I 
Sbjct: 601 SIDLSYVCPYIEAGMYMLFYDKTQDIR 627

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 5e-11
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 12/114 (10%)

Query: 156 LTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSL 215
              L++     L  LP+    +I+ L +    +  LP+    L     L++S   +L SL
Sbjct: 42  NAVLNVGES-GLTTLPDCLPAHITTLVIPDNNLTSLPALPPELR---TLEVSGN-QLTSL 96

Query: 216 PSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQL 269
           P     L  L + S    ++L  LP  L +L       +    +  +P     L
Sbjct: 97  PVLPPGLLELSIFSN-PLTHLPALPSGLCKL------WIFGNQLTSLPVLPPGL 143

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 5e-11
 Identities = 45/184 (24%), Positives = 69/184 (37%), Gaps = 19/184 (10%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF 182
           PTL   L KL   N R    L SLP+    L    +L +SG  +L  LP      +  L 
Sbjct: 197 PTLPSELYKLWAYNNR----LTSLPALPSGL---KELIVSGN-RLTSLPV-LPSELKELM 247

Query: 183 LRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPEC 242
           + G  +  LP     LL L    +    +L  LP SL  L S   ++L G   L      
Sbjct: 248 VSGNRLTSLPMLPSGLLSL---SVYRN-QLTRLPESLIHLSSETTVNLEGN-PLSERTLQ 302

Query: 243 LGQ-LSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE 301
             + ++S   ++      +    S  +   + +L  +    +  +  +     PA RW  
Sbjct: 303 ALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA----DWLVPAREGEPAPADRWHM 358

Query: 302 IWQE 305
             QE
Sbjct: 359 FGQE 362

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 59.9 bits (145), Expect = 3e-10
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 29/157 (18%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLRGI 186
              + TL +  + +L SLP+       L  L++SG  +L  LP +  G   +S       
Sbjct: 60  PAHITTLVIPDN-NLTSLPALPPE---LRTLEVSGN-QLTSLPVLPPGLLELSIFSNPLT 114

Query: 187 AIEELPSSIERLL--------------RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCG 232
            +  LPS + +L                L  L +SD  +L SLP+    L  L   +   
Sbjct: 115 HLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDN-QLASLPALPSELCKLWAYNN-- 171

Query: 233 CSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQL 269
              L  LP     L      +++   +  +P    +L
Sbjct: 172 --QLTSLPMLPSGLQE---LSVSDNQLASLPTLPSEL 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 7/107 (6%)

Query: 167 LKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG 226
           ++++    +   + L +    +  LP  +   +    L + D   L SLP+    L++L 
Sbjct: 31  VQKMRACLNNGNAVLNVGESGLTTLPDCLPAHIT--TLVIPDN-NLTSLPALPPELRTLE 87

Query: 227 VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSG 273
                  + L  LP     L     F+   T++  +P  + +L++ G
Sbjct: 88  ----VSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFG 130

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 1e-10
 Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 17/161 (10%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           I  I   +    L  L  L L  +  ++++  G F  L  L  L+L       RL  I +
Sbjct: 76  IQIIKVNSF-KHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN----RLTTIPN 129

Query: 176 G------NISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGV 227
           G       +  L+LR   IE +PS    R+  L  LDL + KRL  +   +   L +L  
Sbjct: 130 GAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 228 LSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQ 268
           L+L  C NL+ +P  L  L      +L+  ++  I     Q
Sbjct: 190 LNLAMC-NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQ 228

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 49/157 (31%), Positives = 80/157 (50%), Gaps = 12/157 (7%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLPE-IS 174
           ++ +P      RL KL  L L     L++LP+GIF  L+ L  L ++   KL+ LP  + 
Sbjct: 49  LSSLP-SKAFHRLTKLRLLYL-NDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVF 105

Query: 175 SG--NISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSL 230
               N++ L L    ++ LP  + + L +L YL L   + L+SLP  ++ +L SL  L L
Sbjct: 106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRL 164

Query: 231 CGCSNLQRLPECL-GQLSSPITFNLAKTNIERIPESI 266
              + L+R+PE    +L+   T  L    ++R+PE  
Sbjct: 165 Y-NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 12/108 (11%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLRGIAIEELPSSI- 195
           SK L ++PS I       KLDL   +KL  LP         +  L+L    ++ LP+ I 
Sbjct: 25  SKKLTAIPSNIPA--DTKKLDLQS-NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81

Query: 196 ERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSLCGCSN-LQRLPE 241
           + L  L  L ++D  +L++LP  ++ +L +L  L L    N L+ LP 
Sbjct: 82  KELKNLETLWVTD-NKLQALPIGVFDQLVNLAELRL--DRNQLKSLPP 126

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 19/174 (10%), Positives = 58/174 (33%), Gaps = 8/174 (4%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF--NLEFLTKLDLSGCSKLKRLP-EI 173
           I  + +       +++  L+L+ ++ + ++       + + L  L+L     +  +  ++
Sbjct: 132 ITMLRDLDEG-CRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQV 188

Query: 174 SSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC 233
               +  L L    +  +    +    + ++ L + K L  +  +L   ++L    L G 
Sbjct: 189 VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGN 247

Query: 234 SNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLR 287
                         +     +AK  ++++     +      L        + L 
Sbjct: 248 -GFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 30/162 (18%), Positives = 53/162 (32%), Gaps = 16/162 (9%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS-- 179
             +    N+     +  S  LK   + +  +   + +LDLSG   L ++        +  
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 180 -WLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR 238
             L L    + E    +E L  L  LDL++   ++ L        S+  L      N+ R
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELLV----GPSIETLHAANN-NISR 113

Query: 239 LPECLGQLSSPITFNLAKTNIERIPESIIQLFVS-GYLLLSY 279
           +     +        LA   I  + +          YL L  
Sbjct: 114 VS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 28/128 (21%), Positives = 46/128 (35%), Gaps = 12/128 (9%)

Query: 145 SLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLRGIAIEELP-SSIERLLR 200
           ++     N        ++    LK+       S+ N+  L L G  + ++  + +    +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDS-SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE 260
           L  L+LS    L      L  L +L  L L     +Q L        S  T + A  NI 
Sbjct: 60  LELLNLSSNV-LYETL-DLESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANNNIS 112

Query: 261 RIPESIIQ 268
           R+  S  Q
Sbjct: 113 RVSCSRGQ 120

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 31/144 (21%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS----GNISWLFLR 184
              L  L+L  +  + ++ S    LE L  LD      LK++ E S      N+ +L + 
Sbjct: 77  TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDIS 134

Query: 185 GIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCSNLQRLPE- 241
                   + I   L  L  L ++     ++        L++L  L L  C  L++L   
Sbjct: 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPT 193

Query: 242 CLGQLSSPITFNLAKTNIERIPES 265
               LSS    N++  N   +   
Sbjct: 194 AFNSLSSLQVLNMSHNNFFSLDTF 217

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 13/135 (9%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLRG--IAIEELPS- 193
           SK L S+P+GI      T+L+L    KL+ LP         ++ L L    ++ +   S 
Sbjct: 16  SKGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQ 72

Query: 194 SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPEC--LGQLSSPIT 251
           S      L YLDLS    + ++ S+   L+ L  L      NL+++ E      L + I 
Sbjct: 73  SDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIY 130

Query: 252 FNLAKTNIERIPESI 266
            +++ T+       I
Sbjct: 131 LDISHTHTRVAFNGI 145

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 5e-09
 Identities = 34/146 (23%), Positives = 61/146 (41%), Gaps = 10/146 (6%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLR 184
           L KL  + +  + +L  +    F NL  L  L +S    +K LP+   I S     L ++
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQ 136

Query: 185 G-IAIEELPSSIERLL--RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE 241
             I I  +  +    L      L L+    ++ + +S +    L  L+L   +NL+ LP 
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 242 -CLGQLSSPITFNLAKTNIERIPESI 266
                 S P+  ++++T I  +P   
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 10/160 (6%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE--- 172
           +  I           L  + +  +  L+ + + +F NL  L ++ +   + L  +     
Sbjct: 42  LRVIQ-KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100

Query: 173 ISSGNISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLYR--LKSLGVLS 229
            +  N+ +L +    I+ LP       L+   LD+ D   + ++  + +        +L 
Sbjct: 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILW 160

Query: 230 LCGCSNLQRLPECLGQLSSPITFNLAKTN-IERIPESIIQ 268
           L     +Q +       +     NL+  N +E +P  +  
Sbjct: 161 LNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFH 199

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 6e-08
 Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEIS- 174
           +  I        L  L  L +  +  +K LP     +      LD+     +  +   S 
Sbjct: 92  LLYINPEAFQN-LPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 175 ---SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSL 230
              S     L+L    I+E+ +S     +L  L+LSD   L+ LP+   +      +L +
Sbjct: 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 209

Query: 231 CGCSNLQRLPE 241
              + +  LP 
Sbjct: 210 -SRTRIHSLPS 219

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 7e-09
 Identities = 31/153 (20%), Positives = 65/153 (42%), Gaps = 8/153 (5%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSK-SLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEIS 174
           I K+   ++   LN+++ + L  +      + +G F  ++ L+ + ++    +  +P+  
Sbjct: 133 ITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL 190

Query: 175 SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCG 232
             +++ L L G  I ++ + S++ L  L  L LS    + ++ + SL     L  L L  
Sbjct: 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNN 249

Query: 233 CSNLQRLPECLGQLSSPITFNLAKTNIERIPES 265
              L ++P  L          L   NI  I  +
Sbjct: 250 N-KLVKVPGGLADHKYIQVVYLHNNNISAIGSN 281

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 39/142 (27%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNIS---WLFLRG 185
            + L  L+L  +  L  LPSG+  L  L KL LS   K + L +IS+ N      L ++G
Sbjct: 277 FSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKG 334

Query: 186 --IAIEELPSSIERLLRLGYLDLSDCK--RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE 241
               +E     +E L  L  LDLS             L  L  L  L+L     L    E
Sbjct: 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394

Query: 242 CLGQLSSPITFNLAKTNIERIP 263
              +       +LA T ++   
Sbjct: 395 AFKECPQLELLDLAFTRLKVKD 416

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 32/171 (18%), Positives = 50/171 (29%), Gaps = 12/171 (7%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           +  I N T   RL  L  L+L   + +  +    F +   L  L L+    L  + E + 
Sbjct: 45  LPTIQNTTF-SRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETAL 101

Query: 176 GNIS---WLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLC 231
                   LF     I  +    +     L  L L             +  + L VL   
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 232 GCSNLQRL-PECLGQLSS--PITFNLAKTNIERIPESIIQLFVSGYLLLSY 279
               +  L  E +  L     ++ NL   +I  I        V   L    
Sbjct: 162 NN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGG 211

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 34/158 (21%), Positives = 52/158 (32%), Gaps = 23/158 (14%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           +      +    L+ L  LNL  S  L      +F  L  L  L+L G            
Sbjct: 412 LKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGN----------- 459

Query: 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCS 234
            +            +  +S++ L RL  L LS C  L S+   +   LK +  + L    
Sbjct: 460 -HFPKG------NIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN- 510

Query: 235 NLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVS 272
            L             I  NLA  +I  I  S++ +   
Sbjct: 511 RLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQ 548

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 2/111 (1%)

Query: 159 LDLSGCSKLKRLPEISSGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPS 217
            +      L  +P     +   L      +  +  ++  RL+ L +LDL+ C+       
Sbjct: 17  YNCENLG-LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 218 SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQ 268
           +      L  L L     +      L    +       +T I  I    + 
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.5 bits (132), Expect = 9e-09
 Identities = 33/157 (21%), Positives = 59/157 (37%), Gaps = 26/157 (16%)

Query: 128 RLNKLVTLNLRGSK--SLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRG 185
           +  ++  L+L G        +PS + NL +L  L + G + L        G I       
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL-------VGPI------- 93

Query: 186 IAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQ-RLPECLG 244
                 P +I +L +L YL ++      ++P  L ++K+L  L       L   LP  + 
Sbjct: 94  ------PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-ALSGTLPPSIS 146

Query: 245 QLSSPITFNLAKTNIE-RIPESIIQLF-VSGYLLLSY 279
            L + +        I   IP+S      +   + +S 
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 34/167 (20%), Positives = 60/167 (35%), Gaps = 27/167 (16%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSG-------------CSKLKRLPEIS 174
           ++  LVTL+   +    +LP  I +L  L  +   G              SKL     IS
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182

Query: 175 SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS 234
              ++     G    ++P +   L  L ++DLS               K+   + L    
Sbjct: 183 RNRLT-----G----KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN- 231

Query: 235 NLQ-RLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSY 279
           +L   L + +G   +    +L    I   +P+ + QL     L +S+
Sbjct: 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSK-SLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS 175
           I K+P   +   L  +  + + G+         G F+   L  L +S   KL  +P+   
Sbjct: 135 IRKVP-KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLP 192

Query: 176 GNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGC 233
             ++ L L    I+ +    + R  +L  L L   + ++ + + SL  L +L  L L   
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN 251

Query: 234 SNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSY 279
             L R+P  L  L       L   NI ++  +       G     Y
Sbjct: 252 -KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYY 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           I  IP+      +  L+ L+L   K L+ +  G F  L  L  L+L  C  +K +P ++ 
Sbjct: 159 IESIPSYAFNR-VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTP 216

Query: 176 -GNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCG 232
              +  L + G    E+   S   L  L  L + +  ++  +   +   L SL  L+L  
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAH 275

Query: 233 CSNLQRLPE-CLGQLSSPITFNL 254
             NL  LP      L   +  +L
Sbjct: 276 N-NLSSLPHDLFTPLRYLVELHL 297

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 35/158 (22%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIA 187
             + L  L++ G+K        I     L  L++S    +  +P +   ++ +L L    
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280

Query: 188 IE-ELPSSIERLLR-LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQ-RLP-ECL 243
              E+P  +      L  LDLS      ++P        L  L+L    N    LP + L
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN-NFSGELPMDTL 339

Query: 244 GQLSSPITFNLAKTNIE-RIPESIIQLFVS-GYLLLSY 279
            ++      +L+       +PES+  L  S   L LS 
Sbjct: 340 LKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSS 377

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 34/191 (17%), Positives = 61/191 (31%), Gaps = 50/191 (26%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLK-SLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWL 181
           P+ +  L+KL  L L  +  L+  +P  +  ++ L  L L                    
Sbjct: 435 PSSLGSLSKLRDLKLWLNM-LEGEIPQELMYVKTLETLILDFND---------------- 477

Query: 182 FLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVL------------- 228
            L G    E+PS +     L ++ LS+ +    +P  + RL++L +L             
Sbjct: 478 -LTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532

Query: 229 SLCGCSNLQRL-----------PECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLL 277
            L  C +L  L           P  + + S  I  N            I    +      
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK---RYVYIKNDGMKKECHG 589

Query: 278 SYGIVEDTLRI 288
           +  ++E     
Sbjct: 590 AGNLLEFQGIR 600

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 36/188 (19%), Positives = 60/188 (31%), Gaps = 33/188 (17%)

Query: 121 PNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNIS 179
               L     +L  L + G+K    +   +     L  LD+S  +    +P +     + 
Sbjct: 169 VGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQ 226

Query: 180 WLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCG------ 232
            L + G  +  +   +I     L  L++S  + +  +P     LKSL  LSL        
Sbjct: 227 HLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGE 284

Query: 233 --------CSNLQRL-----------PECLGQLSSPITFNLAKTNIE-RIPESIIQLFVS 272
                   C  L  L           P   G  S   +  L+  N    +P   +     
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRG 344

Query: 273 -GYLLLSY 279
              L LS+
Sbjct: 345 LKVLDLSF 352

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 8/113 (7%)

Query: 130 NKLVTLNLRG---SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLRG 185
           +K+ +++L     +    ++ S + +L  L  L LS       +       +++ L L  
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 186 IAIE-ELPS--SIERLLRLGYLDLSDCKRLKSLP-SSLYRLKSLGVLSLCGCS 234
            ++   + +  S+     L +L++S          S   +L SL VL L   S
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 21/162 (12%)

Query: 120 IPNPTLMPRLNKLVTLNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCS----------KLK 168
           +   T +   + L  LN+  +        SG   L  L  LDLS  S             
Sbjct: 116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSD 175

Query: 169 RLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVL 228
              E+    IS   + G    ++   + R + L +LD+S      +    L    +L  L
Sbjct: 176 GCGELKHLAISGNKISG----DVD--VSRCVNLEFLDVSSNN-FSTGIPFLGDCSALQHL 228

Query: 229 SLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIE-RIPESIIQ 268
            + G   L       +   +     N++       IP   ++
Sbjct: 229 DISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK 269

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 34/225 (15%), Positives = 68/225 (30%), Gaps = 38/225 (16%)

Query: 23  NTFTKMPKLRFLKFYSSLFNGE---NKCKMSYLQDPGFAEVKYLHWHGYPLK-SLPSNLS 78
               ++  L  LK  ++ F+G           L         +L  +      ++P+ + 
Sbjct: 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI--------WLDLNTNLFNGTIPAAMF 559

Query: 79  AEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR 138
            +   +     +  + ++        + +  H A + L  +      + RL+     N+ 
Sbjct: 560 KQSGKIAANFIAGKRYVYIK---NDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 139 GSKSLKSLPSGIFNLEFLTKLDLSG-------------CSKLKRLPEISSGNISWLFLRG 185
                        N   +  LD+S                 L  L      N+    + G
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL------NLGHNDISG 670

Query: 186 IAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSL 230
                +P  +  L  L  LDLS  K    +P ++  L  L  + L
Sbjct: 671 ----SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.4 bits (126), Expect = 7e-08
 Identities = 29/163 (17%), Positives = 59/163 (36%), Gaps = 15/163 (9%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE--- 172
              +   +L   L KL  L +    +   +    F  L FL +L++     L+       
Sbjct: 136 YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSL 194

Query: 173 ISSGNISWLFLRGIAIEELPSSI-ERLLRLGYLDLSD----CKRLKSLPS----SLYRLK 223
            S  N+S L L       L     +    +  L+L D          L +    SL +  
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKF 254

Query: 224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESI 266
           +   + +    +L ++ + L Q+S  +    ++  ++ +P+ I
Sbjct: 255 TFRNVKITD-ESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLRGIAIEELPSSI- 195
           S SL S+PSG+   E +  LDLS  +++  +         N+  L L    I  +     
Sbjct: 40  SGSLNSIPSGLT--EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96

Query: 196 ERLLRLGYLDLSDCKRLKSLPSSLYR-LKSLGVLSLCGCSNLQRLPE 241
             L  L +LDLS    L +L SS ++ L SL  L+L G    + L E
Sbjct: 97  SSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGE 141

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 7e-08
 Identities = 22/148 (14%), Positives = 53/148 (35%), Gaps = 12/148 (8%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEIS-----SGNISWLF 182
           L+K+  + +R +++L  +       L  L  L +     LK  P+++             
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEI 137

Query: 183 LRGIAIEELPSSIERLLR--LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLP 240
                +  +P +  + L      L L +     S+    +    L  + L     L  + 
Sbjct: 138 TDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196

Query: 241 E-CLGQLSSPITF-NLAKTNIERIPESI 266
           +   G + S  +  ++++T++  +P   
Sbjct: 197 KDAFGGVYSGPSLLDVSQTSVTALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 25/168 (14%), Positives = 54/168 (32%), Gaps = 27/168 (16%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           +  IP+      L  +  + +    +L+ L S  F NL  +T +++     L  +     
Sbjct: 43  LRTIPSHAF-SNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID---- 97

Query: 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP--SSLYRLKSLGVLSLCGC 233
                           P +++ L  L +L + +   LK  P  + +Y      +L +   
Sbjct: 98  ----------------PDALKELPLLKFLGIFNT-GLKMFPDLTKVYSTDIFFILEITDN 140

Query: 234 SNLQRLPECL--GQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSY 279
             +  +P     G  +  +T  L       +            + L+ 
Sbjct: 141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 19/135 (14%), Positives = 45/135 (33%), Gaps = 11/135 (8%)

Query: 115 KLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP--SGIFNLEFLTKLDLSGCSKLKRLPE 172
           + +  I    L   L  L  L +  +  LK  P  + +++ +    L+++    +  +P 
Sbjct: 91  RNLTYIDPDALKE-LPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 173 ISSGNIS----WLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYR--LKSLG 226
            +   +      L L       +        +L  + L+  K L  +    +        
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 227 VLSLCGCSNLQRLPE 241
           +L +    ++  LP 
Sbjct: 209 LLDVSQT-SVTALPS 222

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 34/161 (21%), Positives = 60/161 (37%), Gaps = 18/161 (11%)

Query: 122 NPTLMPRLNKLVTLNLRGSK-SLKSLPSGIF---NLEFLTKLDLSGCSKLKRLPEISSG- 176
              +   L  L  L+L  S  SL++L +  F       L  L+L+      ++ +I S  
Sbjct: 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN----KISKIESDA 400

Query: 177 -----NISWLFLRGIAIEEL--PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLS 229
                ++  L L    I +         L  +  + LS  K L+   +S   + SL  L 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 230 LCGC--SNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQ 268
           L      N+   P     L +    +L+  NI  I + +++
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLE 501

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 39/172 (22%), Positives = 67/172 (38%), Gaps = 27/172 (15%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           I+KI +      L  L  L+L  ++  + L    +  LE + ++ LS      +  +++ 
Sbjct: 393 ISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN----KYLQLTR 447

Query: 176 G------NISWLFLRG---IAIEELPSSIERLLRLGYLDLSDCKRLKSLPSS-LYRLKSL 225
                  ++  L LR      ++  PS  + L  L  LDLS+   + ++    L  L+ L
Sbjct: 448 NSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKL 506

Query: 226 GVLSLCGCSNLQRL---------PECLGQLSSPITFNLAKTNIERIPESIIQ 268
            +L L    NL RL            L  LS     NL     + IP  + +
Sbjct: 507 EILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 15/156 (9%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSG------NISWL 181
              +  LNL  ++ L+ LP+  F     LT LD+   +    + ++          +  L
Sbjct: 24  PTNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNT----ISKLEPELCQKLPMLKVL 78

Query: 182 FLRGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRL- 239
            L+   + +L   +      L  L L      K   +   + K+L  L L     L    
Sbjct: 79  NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTK 137

Query: 240 PECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYL 275
                QL +     L+   I+ +    + +F +  L
Sbjct: 138 LGTQVQLENLQELLLSNNKIQALKSEELDIFANSSL 173

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 30/156 (19%), Positives = 51/156 (32%), Gaps = 12/156 (7%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSG---NI 178
                    L  L+L  +  ++ + +  F   + L  LDLS    L      +     N+
Sbjct: 90  DKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENL 147

Query: 179 SWLFLRGIAIEELPS---SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSN 235
             L L    I+ L S    I     L  L+LS  +  +  P   + +  L  L L     
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 236 LQRLPECLG---QLSSPITFNLAKTNIERIPESIIQ 268
              L E L      +S    +L+ + +     +   
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 27/158 (17%), Positives = 47/158 (29%), Gaps = 19/158 (12%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIF---NLEFLTKLDLSGCSKLKRLPEISSG-----NISW 180
           + +L  L L   +   SL   +        +  L LS    L      +       N++ 
Sbjct: 194 IGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTM 252

Query: 181 LFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRL 239
           L L    +  +   S   L +L Y  L           SL+ L ++  L+L      Q +
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 240 ---------PECLGQLSSPITFNLAKTNIERIPESIIQ 268
                          L      N+   +I  I  ++  
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFT 350

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 14/135 (10%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCS-KLKRLPEIS 174
           + ++   ++   L  L+ L++  +   +   +GIF  L  L  L ++G S +   LP+I 
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466

Query: 175 SG--NISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSL 230
           +   N+++L L    +E+L  +    L  L  L+++   +LKS+P  ++ RL SL  + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWL 525

Query: 231 ------CGCSNLQRL 239
                 C C  +  L
Sbjct: 526 HTNPWDCSCPRIDYL 540

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 30/161 (18%), Positives = 60/161 (37%), Gaps = 16/161 (9%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           +  IP       L+ L  L++  +K +  L   +F +L  L  L++        L  IS 
Sbjct: 92  LKLIPLGVF-TGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN----DLVYISH 145

Query: 176 G------NISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGV 227
                  ++  L L    +  +P+ ++  L  L  L L     + ++   S  RL  L V
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYRLKV 204

Query: 228 LSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQ 268
           L +     L  +        +  + ++   N+  +P   ++
Sbjct: 205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 9/130 (6%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---I 173
           I  I + +   RL +L  L +     L ++         LT L ++ C  L  +P     
Sbjct: 188 INAIRDYSF-KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVR 245

Query: 174 SSGNISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLC 231
               + +L L    I  +  S+   LLRL  + L   + L  +   +   L  L VL++ 
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAFRGLNYLRVLNVS 304

Query: 232 GCSNLQRLPE 241
           G   L  L E
Sbjct: 305 GN-QLTTLEE 313

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 39/238 (16%), Positives = 78/238 (32%), Gaps = 32/238 (13%)

Query: 10  LDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYP 69
                   L  +S T   M +                     L   GF E          
Sbjct: 177 FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES--------M 228

Query: 70  LKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL 129
            K     ++  K+  L + +S           ++      +     L A           
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMG---SSFGHTNFKDPDNFTFKGLEA----------- 274

Query: 130 NKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLRG 185
           + + T +L     + +L   +F +   L +L L+  +++ ++ +       ++  L L  
Sbjct: 275 SGVKTCDLS-KSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQ 332

Query: 186 IAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCSNLQRLPE 241
             +  + S + E L +L  LDLS    +++L   S   L +L  L+L     L+ +P+
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN-QLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 42.8 bits (101), Expect = 8e-05
 Identities = 28/134 (20%), Positives = 48/134 (35%), Gaps = 13/134 (9%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE--- 172
           IA++   T   RL  L  L +        + +  F  L  L  L L   ++  +L     
Sbjct: 42  IAELN-ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAF 99

Query: 173 ISSGNISWLFLRG--IAIEELPSSI-ERLLRLGYLDLSDCKRLKSLP--SSLYRLKSLGV 227
               N+  L L    +    L  +  + L  L  L L D   +K +   S    ++   V
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHV 158

Query: 228 LSLCGCSNLQRLPE 241
           L L   + ++ + E
Sbjct: 159 LDLTF-NKVKSICE 171

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 2e-07
 Identities = 38/208 (18%), Positives = 64/208 (30%), Gaps = 15/208 (7%)

Query: 73  LPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKL 132
               LS EK  +L+      K L +           I      L   +     +   + L
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL 411

Query: 133 VTLN--------LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFL 183
             ++           SK L            +  L L+    L  L  +     ++ L L
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCHLEQLLLVTHLDL 470

Query: 184 RGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE-- 241
               +  LP ++  L  L  L  SD   L+++   +  L  L  L LC    LQ+     
Sbjct: 471 SHNRLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQ 527

Query: 242 CLGQLSSPITFNLAKTNIERIPESIIQL 269
            L      +  NL   ++ +      +L
Sbjct: 528 PLVSCPRLVLLNLQGNSLCQEEGIQERL 555

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 10/142 (7%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAI 188
           +  L   N+  +  L +L         + +LD S    +  +    +  ++ L L+   +
Sbjct: 185 IPSLFHANVSYNL-LSTLA----IPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNL 238

Query: 189 EELPSSIERLLRLGYLDLSDCKRLKSLP-SSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247
            +    +     L  +DLS    L+ +      +++ L  L +   + L  L      + 
Sbjct: 239 TDTAW-LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN-NRLVALNLYGQPIP 295

Query: 248 SPITFNLAKTNIERIPESIIQL 269
           +    +L+  ++  +  +  Q 
Sbjct: 296 TLKVLDLSHNHLLHVERNQPQF 317

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 8/145 (5%)

Query: 124 TLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLF 182
           + +     +  L+   +  +  +   +     LT L L     L     + +   +  + 
Sbjct: 199 STLAIPIAVEELDASHNS-INVVRGPVNV--ELTILKLQHN-NLTDTAWLLNYPGLVEVD 254

Query: 183 LRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE 241
           L    +E++      ++ RL  L +S+  RL +L      + +L VL L    +L  +  
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVER 312

Query: 242 CLGQLSSPITFNLAKTNIERIPESI 266
              Q        L   +I  +  S 
Sbjct: 313 NQPQFDRLENLYLDHNSIVTLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 40/240 (16%), Positives = 74/240 (30%), Gaps = 48/240 (20%)

Query: 22  SNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEK 81
            +TF     L+ L+  S         +++++       + + +     L +L   ++ E+
Sbjct: 158 DDTFQATTSLQNLQLSS--------NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 209

Query: 82  LML-----LEVPDSDIKRLWDCVKHYSKL----NQIIH----AACHKL---------IAK 119
           L         V       L       + L    N +           L         + K
Sbjct: 210 LDASHNSINVVRGPVNVEL-------TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 262

Query: 120 IPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG--N 177
           I       ++ +L  L +  ++ L +L      +  L  LDLS    L  +         
Sbjct: 263 IMYHPF-VKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR 319

Query: 178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSD----CKRLKSLPSSLYRLKSLGVLSLCGC 233
           +  L+L   +I  L  S      L  L LS     C  L++L  ++ R         C  
Sbjct: 320 LENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 377

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 9/152 (5%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNIS 179
            + +        +++               L     +       +++LP     S   + 
Sbjct: 14  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVE 72

Query: 180 WLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLYR-LKSLGVLSLCGCSNLQ 237
            L L  + IEE+ +        +  L +     ++ LP  +++ +  L VL L    +L 
Sbjct: 73  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLS 130

Query: 238 RLP-ECLGQLSSPITFNLAKTNIERIPESIIQ 268
            LP           T +++  N+ERI +   Q
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 49/248 (19%), Positives = 85/248 (34%), Gaps = 60/248 (24%)

Query: 10  LDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFA---EVKYLHWH 66
           L  + ++ L   S  F   P+L+ L            C++  ++D  +     +  L   
Sbjct: 35  LSFNPLRHLGSYS--FFSFPELQVLDLSR--------CEIQTIEDGAYQSLSHLSTLILT 84

Query: 67  GYPLKSLPSNLSAE--KLMLLEVPDSDIKRLWDCV-KHYSKL-------NQIIHAACHKL 116
           G P++SL     +    L  L   ++++  L +    H   L       N I        
Sbjct: 85  GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI-------- 136

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
                 P     L  L  L+L  +K ++S+       L  +  L+LS             
Sbjct: 137 -QSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLS------------- 181

Query: 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSL---- 230
                L L    +  +     + +RL  L L   + LKS+P  ++ RL SL  + L    
Sbjct: 182 -----LDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 235

Query: 231 --CGCSNL 236
             C C  +
Sbjct: 236 WDCSCPRI 243

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 30/129 (23%)

Query: 140 SKSLKSLPSGIF----------------------NLEFLTKLDLSGCSKLKRLPE---IS 174
             +   +P  +                       +   L  LDLS C +++ + +    S
Sbjct: 16  ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS 74

Query: 175 SGNISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSLCG 232
             ++S L L G  I+ L       L  L  L   +   L SL +     LK+L  L++  
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNV-A 132

Query: 233 CSNLQRLPE 241
            + +Q    
Sbjct: 133 HNLIQSFKL 141

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 24/124 (19%), Positives = 38/124 (30%), Gaps = 29/124 (23%)

Query: 120 IPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNI 178
           + +   +P    L  L +   + L+ L       L  L  L +     L+ +        
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVA------- 72

Query: 179 SWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSL------CG 232
                        P +     RL  L+LS    L+SL     +  SL  L L      C 
Sbjct: 73  -------------PDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGNPLHCS 118

Query: 233 CSNL 236
           C+  
Sbjct: 119 CALR 122

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 10/113 (8%)

Query: 132 LVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLRGIAI 188
            + +N    ++L +LP  +      T L LS  + L        +    ++ L L    +
Sbjct: 12  HLEVNCD-KRNLTALPPDLPKD--TTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 189 EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE 241
            +L      L  LG LDLS   +L+SLP     L +L VL +     L  LP 
Sbjct: 68  TKLQVD-GTLPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFN-RLTSLPL 117

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 49.3 bits (118), Expect = 5e-07
 Identities = 34/123 (27%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE---ISSGNI 178
           P L   L  L  L++  ++ L SLP G    L  L +L L G ++LK LP      +  +
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKL 150

Query: 179 SWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSL------C 231
             L L    + ELP+ +   L  L  L L +   L ++P   +    L    L      C
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNPWLC 209

Query: 232 GCS 234
            C 
Sbjct: 210 NCE 212

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 9/119 (7%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLR 184
            L  L TL+L     L+SLP     L  LT LD+S   +L  LP       G +  L+L+
Sbjct: 75  TLPVLGTLDLS-HNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLK 132

Query: 185 GIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSLCGCSNLQRLPE 241
           G  ++ LP  +     +L  L L++   L  LP+ L   L++L  L L   ++L  +P+
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLL-QENSLYTIPK 189

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 48.8 bits (117), Expect = 7e-07
 Identities = 40/160 (25%), Positives = 62/160 (38%), Gaps = 17/160 (10%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           +A+I        L  L  L+L  +  L+S+    F  L  L  L L  C     L E+  
Sbjct: 68  LARIDAAAFTG-LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC----GLQELGP 122

Query: 176 G------NISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLYR-LKSLGV 227
           G       + +L+L+  A++ LP      L  L +L L    R+ S+P   +R L SL  
Sbjct: 123 GLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDR 181

Query: 228 LSLCGCSNLQRLPE-CLGQLSSPITFNLAKTNIERIPESI 266
           L L     +  +       L   +T  L   N+  +P   
Sbjct: 182 LLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 10/131 (7%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLRGIAIEELPSSI- 195
            + L+++P GI       ++ L G +++  +P     +  N++ L+L    +  + ++  
Sbjct: 20  QQGLQAVPVGIP--AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAF 76

Query: 196 ERLLRLGYLDLSDCKRLKSLPSS-LYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFN 253
             L  L  LDLSD  +L+S+  +  + L  L  L L  C  LQ L       L++     
Sbjct: 77  TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLY 135

Query: 254 LAKTNIERIPE 264
           L    ++ +P+
Sbjct: 136 LQDNALQALPD 146

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 1e-06
 Identities = 60/363 (16%), Positives = 106/363 (29%), Gaps = 112/363 (30%)

Query: 30  KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPD 89
               L F++ L   E   +  ++++     + Y  +   P+K+     S    M +E  D
Sbjct: 63  GTLRL-FWTLLSKQEEMVQK-FVEE--VLRINY-KFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 90  SDIKRLWDCVKHYSKLNQIIHAACHKLIAKI----PNPTL----MPRLNK--LVTLNLRG 139
               RL++  + ++K N        KL   +    P   +    +    K  +       
Sbjct: 118 ----RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 140 SKSLKSLPSGIF------------NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIA 187
            K    +   IF             LE L KL            + SS NI       + 
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIK------LR 226

Query: 188 IEELPSSIERLLRL-----GYLDLSD-------------CK------------------- 210
           I  + + + RLL+        L L +             CK                   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 211 ---RLKSLPSSLYRLKSLGVLSLC-GCSNLQRLPE--CLG---QLS--------SPITF- 252
               L     +L   +   +L     C   Q LP         +LS           T+ 
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 253 NLAKTNIERIPESIIQLFVSG---------YLLLSYGIVEDTLRIQHTNHTPAVRWQEIW 303
           N    N +++  +II+  ++          +  LS  +   +  I      P +    IW
Sbjct: 346 NWKHVNCDKL-TTIIESSLNVLEPAEYRKMFDRLS--VFPPSAHI------PTILLSLIW 396

Query: 304 QEV 306
            +V
Sbjct: 397 FDV 399

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 10/120 (8%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLPE--- 172
           +A +        L KL  LNL     L++L +G+F+ L  L  L L+  ++L  LP    
Sbjct: 47  LATLS-DATFRGLTKLTWLNL-DYNQLQTLSAGVFDDLTELGTLGLAN-NQLASLPLGVF 103

Query: 173 ISSGNISWLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSL 230
                +  L+L G  ++ LPS + +RL +L  L L +  +L+S+P+  + +L +L  LSL
Sbjct: 104 DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL-NTNQLQSIPAGAFDKLTNLQTLSL 162

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 140 SKSLKSLPSGI-FNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSI-ER 197
            KSL S+PSGI  + E L  L  +G + L          ++WL L    ++ L + + + 
Sbjct: 23  GKSLDSVPSGIPADTEKL-DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDD 81

Query: 198 LLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSLCGCSN-LQRLPE 241
           L  LG L L++  +L SLP  ++  L  L  L L    N L+ LP 
Sbjct: 82  LTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYL--GGNQLKSLPS 124

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 8/137 (5%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLRGIA 187
           L K+ +LNL  +    S  S + N+  L  L ++   K+K +  I++  ++  L L    
Sbjct: 131 LTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQ 188

Query: 188 IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247
           IE++ S +  L  L Y      + +  +   +  +  L  L +     +  L   L  LS
Sbjct: 189 IEDI-SPLASLTSLHYFTAYVNQ-ITDIT-PVANMTRLNSLKIGNN-KITDLSP-LANLS 243

Query: 248 SPITFNLAKTNIERIPE 264
                 +    I  I  
Sbjct: 244 QLTWLEIGTNQISDINA 260

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 7/134 (5%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLRGIA 187
           + +L +L +  +K +  L   + NL  LT L++    ++  +  +     +  L +    
Sbjct: 220 MTRLNSLKIGNNK-ITDLS-PLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ 276

Query: 188 IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247
           I ++ S +  L +L  L L++ +        +  L +L  L L    ++  +   L  LS
Sbjct: 277 ISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIRP-LASLS 333

Query: 248 SPITFNLAKTNIER 261
              + + A   I++
Sbjct: 334 KMDSADFANQVIKK 347

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 42/257 (16%), Positives = 77/257 (29%), Gaps = 48/257 (18%)

Query: 22  SNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEK 81
            +TF     L+ L+  S         +++++       + + +     L +L   ++ E+
Sbjct: 164 DDTFQATTSLQNLQLSS--------NRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEE 215

Query: 82  LMLL-----EVPDSDIKRLWDCVKHYSKL----NQIIH----AACHKL---------IAK 119
           L         V       L       + L    N +           L         + K
Sbjct: 216 LDASHNSINVVRGPVNVEL-------TILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEK 268

Query: 120 IPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG--N 177
           I       ++ +L  L +  ++ L +L      +  L  LDLS    L  +         
Sbjct: 269 IMYHPF-VKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDR 325

Query: 178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSD----CKRLKSLPSSLYRLKSLGVLSLCGC 233
           +  L+L   +I  L  S      L  L LS     C  L++L  ++ R         C  
Sbjct: 326 LENLYLDHNSIVTLKLST--HHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKI 383

Query: 234 SNLQRLPECLGQLSSPI 250
                   C  +   P 
Sbjct: 384 DYQLEHGLCCKESDKPY 400

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.4 bits (102), Expect = 6e-05
 Identities = 25/152 (16%), Positives = 52/152 (34%), Gaps = 9/152 (5%)

Query: 123 PTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNIS 179
            + +        +++               L     +       +++LP     S   + 
Sbjct: 20  DSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVE 78

Query: 180 WLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLYR-LKSLGVLSLCGCSNLQ 237
            L L  + IEE+ +        +  L +     ++ LP  +++ +  L VL L    +L 
Sbjct: 79  LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLS 136

Query: 238 RLP-ECLGQLSSPITFNLAKTNIERIPESIIQ 268
            LP           T +++  N+ERI +   Q
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 50/236 (21%), Positives = 85/236 (36%), Gaps = 52/236 (22%)

Query: 16  KELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF---AEVKYLHWHGYPLKS 72
            + +    + T       L     +    +  K       G      V+YL   G  L  
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV----QGIQYLPNVRYLALGGNKLHD 77

Query: 73  LPSNLSAEKLMLLEVPDS--DIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLN 130
           +                   ++  L       ++L  + +    KL              
Sbjct: 78  IS------------ALKELTNLTYLI---LTGNQLQSLPNGVFDKL-------------T 109

Query: 131 KLVTLNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLPEI---SSGNISWLFLRGI 186
            L  L L     L+SLP G+F+ L  LT L+L+  ++L+ LP+       N++ L L   
Sbjct: 110 NLKELVLV-ENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYN 167

Query: 187 AIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSL------CGCS 234
            ++ LP  + ++L +L  L L    +LKS+P  ++ RL SL  + L      C C 
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 42/249 (16%), Positives = 78/249 (31%), Gaps = 34/249 (13%)

Query: 12  MSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLK 71
           ++ V  +     +   +  +     + SL     +  +          +K L        
Sbjct: 284 LANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQ--LKQFPTLDLPFLKSLTLTMNKGS 341

Query: 72  SLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIH---------------AACHKL 116
                ++   L  L++  + +     C       N + H                   +L
Sbjct: 342 ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL 401

Query: 117 ---------IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSK 166
                    + ++   +    L KL+ L++  +   K    GIF  L  L  L ++G S 
Sbjct: 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 167 LKRLPEISSGNIS---WLFLRGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYR- 221
                     N +   +L L    +E++     + L RL  L++S    L  L SS Y  
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQ 519

Query: 222 LKSLGVLSL 230
           L SL  L  
Sbjct: 520 LYSLSTLDC 528

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 33/171 (19%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           I  I +      L+ L  L L G+  ++S   G F  L  L  L       L  L     
Sbjct: 68  IETIEDKAWHG-LHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETK-LASLE---- 120

Query: 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKS--LPSSLYRLKSLGVLSLCGC 233
                              I +L+ L  L+++    + S  LP+    L +L  + L   
Sbjct: 121 ----------------SFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN 163

Query: 234 SNLQRLPEC----LGQLSSP-ITFNLAKTNIERIPESIIQLFVSGYLLLSY 279
             +Q +       L +     ++ +++   I+ I +   Q      L L  
Sbjct: 164 -YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 27/136 (19%), Positives = 40/136 (29%), Gaps = 24/136 (17%)

Query: 133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELP 192
           +T      + L  +P  I +      +DLS    LK L                      
Sbjct: 14  ITYQCMD-QKLSKVPDDIPS--STKNIDLSFN-PLKILK--------------------S 49

Query: 193 SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITF 252
            S      L +LDLS C+       + + L  L  L L G       P     L+S    
Sbjct: 50  YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109

Query: 253 NLAKTNIERIPESIIQ 268
              +T +  +    I 
Sbjct: 110 VAVETKLASLESFPIG 125

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.4 bits (113), Expect = 4e-06
 Identities = 19/102 (18%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAI 188
           L  L +L++  +     +P      E +  L+LS    ++ +       +  L +    +
Sbjct: 386 LKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNL 443

Query: 189 EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSL 230
           +     + RL     L +S   +LK+LP +      L V+ +
Sbjct: 444 DSFSLFLPRLQE---LYISRN-KLKTLPDASL-FPVLLVMKI 480

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 42/279 (15%), Positives = 93/279 (33%), Gaps = 24/279 (8%)

Query: 10  LDMSKVKELHPNSNTFTKMPKLRFLKFYSS--------LFNGENKCKMSYLQDPGFAEVK 61
           L++  +   +  S +   +  +  L  + S          +  +  +   L+D   A  +
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 62  YLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIP 121
           +       + S    L+    +L +   +++ +L   +   S++                
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 122 NPTLMPRLNKLVTLNLRG----SKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSG 176
              ++  L K+ T+ +R        L    S ++  LE + ++ +   SK+  +P   S 
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKVFLVPCSFSQ 331

Query: 177 NIS---WLFLRGIAIEEL----PSSIERLLRLGYLDLSDCK--RLKSLPSSLYRLKSLGV 227
           ++    +L L    + E      +       L  L LS      ++     L  LK+L  
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTS 391

Query: 228 LSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESI 266
           L +        +P+           NL+ T I  +   I
Sbjct: 392 LDISRN-TFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI 429

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 25/148 (16%), Positives = 50/148 (33%), Gaps = 11/148 (7%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLR 184
              + +L+L  +K +  +  G       L  L L    ++  +      S G++  L L 
Sbjct: 25  TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLS 82

Query: 185 GIAIEELPSS-IERLLRLGYLDLSDCKRLKSLPSS--LYRLKSLGVLSLCGCSNLQRLPE 241
              +  L SS    L  L YL+L      ++L  +     L +L  L +        +  
Sbjct: 83  DNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRR 141

Query: 242 -CLGQLSSPITFNLAKTNIERIPESIIQ 268
                L+S     +   ++       ++
Sbjct: 142 IDFAGLTSLNELEIKALSLRNYQSQSLK 169

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.1 bits (112), Expect = 4e-06
 Identities = 44/238 (18%), Positives = 72/238 (30%), Gaps = 27/238 (11%)

Query: 10  LDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYP 69
           +D+ K         TF  + KL+ L    +                    +  +   G  
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT----------TIHFIPSIPDIFLSGNK 392

Query: 70  LKSLPS-NLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPR 128
           L +LP  NL+A  + L E    ++  L+  +     L  +I        +          
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILY-FLLRVPHLQILILNQNR--FSSCSGDQTPSE 449

Query: 129 LNKLVTLNLRGSK----SLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS---W 180
              L  L L  +         L   +F  L  L  L L+    L  LP     +++    
Sbjct: 450 NPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRG 508

Query: 181 LFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLS---LCGCSN 235
           L L    +  L  +      L  LD+S  + L   P     L  L +     +C C  
Sbjct: 509 LSLNSNRLTVLSHND-LPANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFICECEL 565

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 16/174 (9%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE--- 172
           I  +   +  P L +L  L L    +  ++    F NL  L  LDL    K+  L     
Sbjct: 36  IRTVTASSF-PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAF 93

Query: 173 ISSGNISWLFLRGIAIEEL---PSSIERLLRLGYLDLSDCKRLKSLP--SSLYRLKSLGV 227
               ++  L L    + +          L  L  LDLS  + ++SL    S  +L SL  
Sbjct: 94  QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKS 152

Query: 228 LSLCGCSNLQRLPEC-LGQLSSP--ITFNLAKTNIERIPESIIQLFVSGYLLLS 278
           +       +  + E  L  L       F+LA  ++           ++ +  + 
Sbjct: 153 IDFSSN-QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 6e-06
 Identities = 23/136 (16%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLRGIA 187
           +N L  + L     +  L +GI     +  L ++          IS   N+  L + G  
Sbjct: 43  MNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD 99

Query: 188 I-EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQL 246
           +  +   ++  L  L  LD+S      S+ + +  L  +  + L     +  +   L  L
Sbjct: 100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTL 158

Query: 247 SSPITFNLAKTNIERI 262
               + N+    +   
Sbjct: 159 PELKSLNIQFDGVHDY 174

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 39.2 bits (92), Expect = 6e-04
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 6/133 (4%)

Query: 127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLRG 185
                 +   L  S +     +    +  LT + L+    +  L  I    NI  L +  
Sbjct: 20  STFKAYLNGLLGQSSTANITEA---QMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINN 75

Query: 186 IAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQ 245
           I      + I  L  L  L +           +L  L SL +L +   ++   +   +  
Sbjct: 76  IHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 246 LSSPITFNLAKTN 258
           L    + +L+   
Sbjct: 135 LPKVNSIDLSYNG 147

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 46.3 bits (109), Expect = 8e-06
 Identities = 36/148 (24%), Positives = 59/148 (39%), Gaps = 12/148 (8%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS- 175
           I +I          + +  NL+  KS+         L  + ++  +    +K +  I   
Sbjct: 11  IKQIFP---DDAFAETIKDNLK-KKSVTDA-VTQNELNSIDQIIANNS-DIKSVQGIQYL 64

Query: 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSN 235
            N++ LFL G  + ++   +  L  LG+L L + K +K L SSL  LK L  LSL     
Sbjct: 65  PNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENK-IKDL-SSLKDLKKLKSLSLEHN-G 120

Query: 236 LQRLPECLGQLSSPITFNLAKTNIERIP 263
           +  +   L  L    +  L    I  I 
Sbjct: 121 ISDI-NGLVHLPQLESLYLGNNKITDIT 147

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 39/137 (28%), Positives = 63/137 (45%), Gaps = 9/137 (6%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLRGIA 187
           LN +  +    S  +KS+  GI  L  +TKL L+G  KL  +  +++  N+ WLFL    
Sbjct: 42  LNSIDQIIANNSD-IKSV-QGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK 98

Query: 188 IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247
           I++L SS++ L +L  L L     +  + + L  L  L  L L     +  +   L +L+
Sbjct: 99  IKDL-SSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNN-KITDI-TVLSRLT 153

Query: 248 SPITFNLAKTNIERIPE 264
              T +L    I  I  
Sbjct: 154 KLDTLSLEDNQISDIVP 170

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 8e-06
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 18/139 (12%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG-------NISWLFLRGIAIEELP 192
            + L ++P  + +  +   LDLS       L  + +        N+  L L    +  + 
Sbjct: 27  KQQLPNVPQSLPS--YTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 193 SSI-ERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSP 249
           S     +  L YLDLS    L +L       L++L VL L    ++  +       ++  
Sbjct: 81  SEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQL 138

Query: 250 ITFNLAKTNIERIPESIIQ 268
               L++  I R P  +I+
Sbjct: 139 QKLYLSQNQISRFPVELIK 157

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 30/149 (20%), Positives = 53/149 (35%), Gaps = 21/149 (14%)

Query: 134 TLNLRGSKSLKSLPSGIF--NLEFLTKLDLSGCSKLKRLPEISSG------NISWLFLRG 185
            L+L  +  L  L +      L  L  L LS       L  ISS       N+ +L L  
Sbjct: 43  LLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHN----HLNFISSEAFVPVPNLRYLDLSS 97

Query: 186 IAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCSNLQRLPE-- 241
             +  L   +   L  L  L L +   +  +   +   +  L  L L     + R P   
Sbjct: 98  NHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVEL 155

Query: 242 --CLGQLSSPITFNLAKTNIERIPESIIQ 268
                +L   +  +L+   ++++P + +Q
Sbjct: 156 IKDGNKLPKLMLLDLSSNKLKKLPLTDLQ 184

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 24/131 (18%), Positives = 44/131 (33%), Gaps = 20/131 (15%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPE--- 172
           +  +        L  L  L L  +  +  +    F ++  L KL LS   ++ R P    
Sbjct: 100 LHTLDEFLFS-DLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELI 156

Query: 173 ---ISSGNISWLFLRGIAIEELP-SSIERLLRLGYLDLS--------DCKRLKSLPSSLY 220
                   +  L L    +++LP + +++L       L         DC +L  L S   
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDC-KLYQLFSHWQ 215

Query: 221 RLKSLGVLSLC 231
             +   V+   
Sbjct: 216 YRQLSSVMDFQ 226

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 10/141 (7%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAI 188
           L+KL TL+   +  L  +   + +   L      GC K+K L    +  +  L  +   I
Sbjct: 253 LSKLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGI 309

Query: 189 EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSS 248
            EL   + +  +L YL L++ + L  L  S      L  LS     ++Q     +G++ +
Sbjct: 310 TELD--LSQNPKLVYLYLNNTE-LTELDVS--HNTKLKSLSCVNA-HIQDFSS-VGKIPA 362

Query: 249 PITFNLAKTNIERIPESIIQL 269
                 A+     +P+  +  
Sbjct: 363 LNNNFEAEGQTITMPKETLTN 383

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 31/206 (15%), Positives = 73/206 (35%), Gaps = 15/206 (7%)

Query: 75  SNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT 134
           S  S + L + +V           +        I +        ++ +     +++  + 
Sbjct: 271 SGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT--RMVHMLCPSKISPFLH 328

Query: 135 LNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSG-----NISWLFLRG--I 186
           L+   +  L         +L  L  L L   ++LK L +I+       ++  L +    +
Sbjct: 329 LDF-SNNLLTDTVFENCGHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQLDISQNSV 386

Query: 187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQL 246
           + +E          L  L++S      ++   L     + VL L     ++ +P+ + +L
Sbjct: 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSN-KIKSIPKQVVKL 443

Query: 247 SSPITFNLAKTNIERIPESIIQLFVS 272
            +    N+A   ++ +P+ I     S
Sbjct: 444 EALQELNVASNQLKSVPDGIFDRLTS 469

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 33/154 (21%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 134 TLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNIS------WLFLRGIA 187
            ++      L  +P  +      T L++S       + E+ + +I        L +    
Sbjct: 4   LVDRS-KNGLIHVPKDLSQK--TTILNISQ----NYISELWTSDILSLSKLRILIISHNR 56

Query: 188 IEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPEC--LG 244
           I+ L  S+ +    L YLDLS  K L  +        +L  L L        LP C   G
Sbjct: 57  IQYLDISVFKFNQELEYLDLSHNK-LVKISCH--PTVNLKHLDLSFN-AFDALPICKEFG 112

Query: 245 QLSSPITFNLAKTNIERIPESIIQLFVSGYLLLS 278
            +S      L+ T++E+     I       +LL 
Sbjct: 113 NMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLV 146

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 40.2 bits (94), Expect = 6e-04
 Identities = 26/249 (10%), Positives = 68/249 (27%), Gaps = 13/249 (5%)

Query: 20  PNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSA 79
           P    F  M +L+FL   ++     +   +++L       V    +          + + 
Sbjct: 106 PICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNT 165

Query: 80  EKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRG 139
           E L ++   + +   + D         ++ +      I  +           ++      
Sbjct: 166 ESLHIVFPTNKEFHFILDVSVKTVANLELSN------IKCVLEDNKCSYFLSILAKLQTN 219

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLL 199
            K          N    T        +L     +   +IS + L+G             L
Sbjct: 220 PKLSNL----TLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275

Query: 200 RLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFNLAKT 257
           +   +            S +Y    ++ + +    S  + +   C  ++S  +  + +  
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF-TVSGTRMVHMLCPSKISPFLHLDFSNN 334

Query: 258 NIERIPESI 266
            +       
Sbjct: 335 LLTDTVFEN 343

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 41/186 (22%), Positives = 67/186 (36%), Gaps = 14/186 (7%)

Query: 80  EKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRG 139
              +   +    +  L    K  S +        +  I  +     M     L  L+L  
Sbjct: 19  ANAVKQNLGKQSVTDL-VSQKELSGVQNFN--GDNSNIQSLAG---MQFFTNLKELHLSH 72

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLL 199
           ++ +  L S + +L  L +L ++   +LK L  I S  +S LFL    + +   S+  L 
Sbjct: 73  NQ-ISDL-SPLKDLTKLEELSVNRN-RLKNLNGIPSACLSRLFLDNNELRDT-DSLIHLK 128

Query: 200 RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI 259
            L  L + + K LKS+   L  L  L VL L G   +      L +L      +L     
Sbjct: 129 NLEILSIRNNK-LKSI-VMLGFLSKLEVLDLHGN-EITNTGG-LTRLKKVNWIDLTGQKC 184

Query: 260 ERIPES 265
              P  
Sbjct: 185 VNEPVK 190

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 34/171 (19%), Positives = 55/171 (32%), Gaps = 33/171 (19%)

Query: 117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISS 175
           I  I +      L+ L TL L G+  ++SL  G F  L  L KL     +          
Sbjct: 64  IQTIEDGAYQS-LSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN---------- 111

Query: 176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSL--PSSLYRLKSLGVLSLCGC 233
                  L  +        I  L  L  L+++    ++S   P     L +L  L L   
Sbjct: 112 -------LASL----ENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 234 SNLQRL-PECLGQLSS----PITFNLAKTNIERIPESIIQLFVSGYLLLSY 279
             +Q +    L  L       ++ +L+   +  I     +      L L  
Sbjct: 160 -KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRN 209

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 25/129 (19%), Positives = 34/129 (26%), Gaps = 23/129 (17%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLL 199
             +   +P  +        LDLS                    LR +       S     
Sbjct: 16  ELNFYKIPDNLPF--STKNLDLSFNP-----------------LRHL----GSYSFFSFP 52

Query: 200 RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI 259
            L  LDLS C+       +   L  L  L L G             LSS       +TN+
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112

Query: 260 ERIPESIIQ 268
             +    I 
Sbjct: 113 ASLENFPIG 121

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 15/127 (11%)

Query: 122 NPTLMPRLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS- 179
              +   L+ L  L + G+   ++    IF  L  LT LDLS C +L++L   +  ++S 
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSS 495

Query: 180 --WLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYR--LKSLGVLSL---- 230
              L +       L     + L  L  LD S    + +      +    SL  L+L    
Sbjct: 496 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND 554

Query: 231 --CGCSN 235
             C C +
Sbjct: 555 FACTCEH 561

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 40/183 (21%)

Query: 128 RLNKLVTLNLRGSKSLKSL------PSGIFNLEFLTKLDLSGCSKLKRLPEISSG----- 176
           +  +  TL L+  K L              +L  L  LDLS  + L      S       
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTT 373

Query: 177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSL--PSSLYRLKSLGVLSL---- 230
           ++ +L L    +  + S+   L +L +LD      LK +   S    L++L  L +    
Sbjct: 374 SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 231 ---------CGCSNLQRL------------PECLGQLSSPITFNLAKTNIERIPESIIQL 269
                     G S+L+ L            P+   +L +    +L++  +E++  +    
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 270 FVS 272
             S
Sbjct: 493 LSS 495

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 4/127 (3%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSI-ERL 198
           SK   S+P+GI     +  L  +  +KL+     S  N+  L+L    +  LP  + + L
Sbjct: 28  SKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL 87

Query: 199 LRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT 257
            +L  LDL    +L  LPS+++ RL  L  L +C C+ L  LP  + +L+      L + 
Sbjct: 88  TQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQN 145

Query: 258 NIERIPE 264
            ++ IP 
Sbjct: 146 QLKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 37/115 (32%), Positives = 50/115 (43%), Gaps = 32/115 (27%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIFN-LEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI 186
            L +L  L+L  ++ L  LPS +F+ L  L +L +  C+KL  LP            RG 
Sbjct: 86  SLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMC-CNKLTELP------------RG- 130

Query: 187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSL------CGCS 234
                   IERL  L +L L   + LKS+P   + RL SL    L      C C 
Sbjct: 131 --------IERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 44/266 (16%), Positives = 81/266 (30%), Gaps = 53/266 (19%)

Query: 9   CLDMSKVKELHPNSNTFTKMPKLRFLKFYSS-----LFNGENKCKMSYLQD---PGFAEV 60
                 V+ L+  + T T+        +  +     +          + ++     FAE+
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331

Query: 61  KYLHWHGYPLKSLPSNLSAEKLMLLEVPD--SDIKRLWDCVKHYSKLNQIIHAACHKL-- 116
                       +              P   S    L       +     +   C  L  
Sbjct: 332 NIKMLSISDTPFIHM----------VCPPSPSSFTFLN---FTQNVFTDSVFQGCSTLKR 378

Query: 117 ----------IAKIPNPTLMP-RLNKLVTLNLRGSKSLKSLPSGIFNLEF-----LTKLD 160
                     +       LM   ++ L TL++    SL SL S  ++        +  L+
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDV----SLNSLNSHAYDRTCAWAESILVLN 434

Query: 161 LSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLY 220
           LS       +       +  L L    I  +P  +  L  L  L+++   +LKS+P  ++
Sbjct: 435 LSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVAS-NQLKSVPDGVF 493

Query: 221 -RLKSLGVLSL------CGCSNLQRL 239
            RL SL  + L      C C  ++ L
Sbjct: 494 DRLTSLQYIWLHDNPWDCTCPGIRYL 519

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 4/104 (3%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSI-ERL 198
           S+   S+P+GI        L+ +    L         +++ L+L G  ++ LP+ +  +L
Sbjct: 16  SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75

Query: 199 LRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSLCGCSNLQRLPE 241
             L YL+LS   +L+SLP+ ++ +L  L  L+L   + LQ LP+
Sbjct: 76  TSLTYLNLS-TNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLPD 117

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 11/108 (10%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS----GNISWLFLRGIAIEELPSSI 195
           ++ L  +P  I   ++  +L L+  ++   L           +  +      I ++    
Sbjct: 20  NQKLNKIPEHIP--QYTAELRLNN-NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 196 -ERLLRLGYLDLSDCKRLKSLPSSL-YRLKSLGVLSLCGCSNLQRLPE 241
            E    +  + L+   RL+++   +   L+SL  L L     +  +  
Sbjct: 77  FEGASGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSN-RITCVGN 122

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 23/168 (13%), Positives = 46/168 (27%), Gaps = 13/168 (7%)

Query: 124 TLMPRLNKLVTLNLRGSK-SLKSLPSGIFNLEFLTKLDLSGCSKL---------KRLPEI 173
            +      L  + L+    +   L     + +    L LS C                 +
Sbjct: 99  AMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 174 SSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRL---KSLPSSLYRLKSLGVLSL 230
              ++    +  ++   L    +    L  L++S         +L   + R  +L  L L
Sbjct: 159 KELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKL 218

Query: 231 CGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLS 278
                L++L   L +              E  P+    L V+      
Sbjct: 219 NRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKE 266

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 26/139 (18%), Positives = 44/139 (31%), Gaps = 23/139 (16%)

Query: 124 TLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL 183
            L+ R   L +L L  +  L+ L + +     L +L   G +   R    S  +++    
Sbjct: 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264

Query: 184 R---------GIAIEELPSSIERLLRLGYLDLSDCKRL-KSLPSSLYRLKSLGVLSLC-- 231
           +               LP+      RL  L+LS        L   L +   L  L +   
Sbjct: 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

Query: 232 -----------GCSNLQRL 239
                       C +L+ L
Sbjct: 325 IEDAGLEVLASTCKDLREL 343

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 27/144 (18%), Positives = 49/144 (34%), Gaps = 15/144 (10%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNIS---WLFLR 184
            N+     +  S  LK   + +  +   + +LDLSG   L ++        +    L L 
Sbjct: 9   GNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLS 66

Query: 185 GIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLG 244
              + E    +E L  L  LDL++   ++ L        S+  L      N+ R+     
Sbjct: 67  SNVLYETL-DLESLSTLRTLDLNNN-YVQELL----VGPSIETLHAANN-NISRVSC--S 117

Query: 245 QLSSPITFNLAKTNIERIPESIIQ 268
           +        LA   I  + +    
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEG 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 9/137 (6%)

Query: 129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GNISWLFLRGIA 187
           L  L  L+L G++ LK + + + +L  LT LDL+   ++  L  +S    ++ L L    
Sbjct: 220 LTNLDELSLNGNQ-LKDIGT-LASLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGANQ 276

Query: 188 IEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247
           I  + S +  L  L  L+L++ + L+ +   +  LK+L  L+L    N+  +   +  L+
Sbjct: 277 ISNI-SPLAGLTALTNLELNENQ-LEDIS-PISNLKNLTYLTLYFN-NISDISP-VSSLT 331

Query: 248 SPITFNLAKTNIERIPE 264
                      +  +  
Sbjct: 332 KLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 33/147 (22%), Positives = 64/147 (43%), Gaps = 9/147 (6%)

Query: 119 KIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISS-GN 177
           K+ + +++ +L  L +L    ++ +  +   +  L  L +L L+G  +LK +  ++S  N
Sbjct: 188 KVSDISVLAKLTNLESLIATNNQ-ISDIT-PLGILTNLDELSLNGN-QLKDIGTLASLTN 244

Query: 178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQ 237
           ++ L L    I  L   +  L +L  L L   + + ++ S L  L +L  L L     L+
Sbjct: 245 LTDLDLANNQISNLA-PLSGLTKLTELKLGANQ-ISNI-SPLAGLTALTNLELNEN-QLE 300

Query: 238 RLPECLGQLSSPITFNLAKTNIERIPE 264
            +   +  L +     L   NI  I  
Sbjct: 301 DISP-ISNLKNLTYLTLYFNNISDISP 326

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 5/116 (4%)

Query: 148 SGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLS 207
                L    K  L   +    + +     ++ L    + I+ +   +E L  L  ++ S
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFS 76

Query: 208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP 263
           + + L  +   L  L  L  + +     +  +   L  L++     L    I  I 
Sbjct: 77  NNQ-LTDIT-PLKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDID 128

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---ISSGNISWLFLRGIAIEELPSSI- 195
            K L  +P+ +   E +T++ L   + +K +P         +  + L    I EL     
Sbjct: 20  GKGLTEIPTNLP--ETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF 76

Query: 196 ERLLRLGYLDLSDCKRLKSLPSSL-YRLKSLGVLSLCGCSNLQRLPE 241
           + L  L  L L   K +  LP SL   L SL +L L   + +  L  
Sbjct: 77  QGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNA-NKINCLRV 121

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 31/115 (26%)

Query: 128 RLNKLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI 186
            L  L +L L G+K +  LP  +F  L  L  L L+  +K+  L                
Sbjct: 78  GLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNA-NKINCLR--------------- 120

Query: 187 AIEELPSSIERLLRLGYLDLSDCKRLKSLP-SSLYRLKSLGVLSL------CGCS 234
                  + + L  L  L L D  +L+++   +   L+++  + L      C C 
Sbjct: 121 -----VDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 15/212 (7%)

Query: 54  DPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAAC 113
           DP  A    +      +    +    + +  L    + +  + + V++ + L  +     
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLE--LK 71

Query: 114 HKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI 173
              I  +     +  L K+  L L G+  LK++ S I  L+ +  LDL+   ++  +  +
Sbjct: 72  DNQITDLAP---LKNLTKITELELSGNP-LKNV-SAIAGLQSIKTLDLTST-QITDVTPL 125

Query: 174 SS-GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCG 232
           +   N+  L+L    I  + S +  L  L YL + + + +  L + L  L  L  L    
Sbjct: 126 AGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQ-VSDL-TPLANLSKLTTLKA-- 180

Query: 233 CSNLQRLPECLGQLSSPITFNLAKTNIERIPE 264
             N       L  L + I  +L    I  +  
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSP 212

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 29/179 (16%), Positives = 54/179 (30%), Gaps = 10/179 (5%)

Query: 75  SNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT 134
           ++L      + E      K L    ++   L  +           +           L  
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI----LELVGFFKAAANLEE 247

Query: 135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKL--KRLPEISSG--NISWLFLRGIAI-- 188
                      +P    NL F  KL   G S +    +P +      I  L L    +  
Sbjct: 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET 307

Query: 189 EELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS 247
           E+  + I++   L  L+  +    + L       K L  L +   ++ Q + +  G +S
Sbjct: 308 EDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 11/106 (10%)

Query: 141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLRG------IAIEELP 192
           K    LP+G  +   +  +D +    +    +   G   +  + L          +E L 
Sbjct: 48  KDYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLS 107

Query: 193 SSIERLLRLGYLDLSDCKRL--KSLPSSLYRLKSLGVLSLCGCSNL 236
                   +  +++  C  +  K +  +L+  ++L  L L     +
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGV 152

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 124 TLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LPEISSG--NIS 179
            ++ + +KL  L+L G +    + + +     L +L+LSGCS      L  + S    + 
Sbjct: 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 171

Query: 180 WLFLRG---IAIEELPSSIERLLR-LGYLDLSDCKRL---KSLPSSLYRLKSLGVLSLCG 232
            L L        + +  ++  +   +  L+LS  ++      L + + R  +L  L L  
Sbjct: 172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231

Query: 233 CSNL 236
              L
Sbjct: 232 SVML 235

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 9/106 (8%)

Query: 140 SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG--NISWLFLRGIAIEELPSSI-E 196
           +K LK LP GI     +T+L L G ++   +P+  S   +++ + L    I  L +    
Sbjct: 19  NKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 197 RLLRLGYLDLSDCKRLKSLPSSLY-RLKSLGVLSLCGCSNLQRLPE 241
            + +L  L LS   RL+ +P   +  LKSL +LSL G +++  +PE
Sbjct: 76  NMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPE 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	312
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.94
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.93
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.93
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.93
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.93
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.92
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.92
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.92
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.91
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.91
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.9
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.9
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.9
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.9
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.89
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.88
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.88
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.74
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.7
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.68
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.64
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.62
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.5
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.49
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.42
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.4
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.39
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.03
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.01
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.68
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.53
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.49
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.14
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.08
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.03
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.99
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.94
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.74
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.93
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.48
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	94.85

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=7e-28  Score=218.10  Aligned_cols=297  Identities=16%  Similarity=0.165  Sum_probs=202.4

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-CCcc-CcC
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-PSNL-SAE   80 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~-~l~   80 (312)
                      +++.+++..+...  +.....|.++++|++|++++|.+     .....+..+.. ++|++|++++|.+..+ +..+ .++
T Consensus        31 ~l~~L~Ls~n~i~--~~~~~~~~~l~~L~~L~L~~n~~-----~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  103 (455)
T 3v47_A           31 HVNYVDLSLNSIA--ELNETSFSRLQDLQFLKVEQQTP-----GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA  103 (455)
T ss_dssp             TCCEEECCSSCCC--EECTTTTSSCTTCCEEECCCCST-----TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred             ccCEEEecCCccC--cCChhHhccCccccEEECcCCcc-----cceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence            4566666555443  33457788999999999998764     11222344555 8899999999988766 3344 788


Q ss_pred             CccEEeCCCCcccc-hhhh--cccCCCchhcchhhcccccccC-CCCCCcCCCcCCcEEEcCCCCcCccccccccC----
Q 047461           81 KLMLLEVPDSDIKR-LWDC--VKHYSKLNQIIHAACHKLIAKI-PNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN----  152 (312)
Q Consensus        81 ~L~~L~l~~~~~~~-~~~~--~~~l~~L~~l~~~~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~----  152 (312)
                      +|++|++++|.++. .+..  +..+++|+.|......  +..+ +. ..++.+++|++|++++|.+.+..+..+..    
T Consensus       104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~  180 (455)
T 3v47_A          104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN--IKKIQPA-SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK  180 (455)
T ss_dssp             TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB--CCSCCCC-GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTC
T ss_pred             cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc--cCccCcc-cccCCCCcccEEeCCCCcccccChhhhhccccc
Confidence            99999999998875 3333  7788888844333211  2333 22 12678889999999998866555544433    


Q ss_pred             ------------------------------CCcCcEEeccCCCCCCCCC-------------------------------
Q 047461          153 ------------------------------LEFLTKLDLSGCSKLKRLP-------------------------------  171 (312)
Q Consensus       153 ------------------------------~~~L~~L~l~~~~~l~~~p-------------------------------  171 (312)
                                                    +++|++|++++|...+..|                               
T Consensus       181 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  260 (455)
T 3v47_A          181 HFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN  260 (455)
T ss_dssp             EEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred             cccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh
Confidence                                          2567777777764221000                               


Q ss_pred             ----------ccccCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcch
Q 047461          172 ----------EISSGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLP  240 (312)
Q Consensus       172 ----------~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p  240 (312)
                                .....+++.+++++|.++++ |..++.+++|++|++++|++.+..+..++.+++|++|++++|.+.+..|
T Consensus       261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  340 (455)
T 3v47_A          261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS  340 (455)
T ss_dssp             SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred             hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence                      00014677888888877754 4567778888888888888877777778888888888888887766667


Q ss_pred             hhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461          241 ECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       241 ~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      ..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++.+ .+...+..++.++.++...+.+.+.|
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCcccc-CCHhHhccCCcccEEEccCCCcccCC
Confidence            7788888888888888888844 6677888888888888888875 33334455666666665555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=9.2e-28  Score=230.54  Aligned_cols=228  Identities=21%  Similarity=0.244  Sum_probs=153.2

Q ss_pred             CCccEEeeCCCCCC-CCCCcc-CcCCccEEeCCCCccc-chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461           58 AEVKYLHWHGYPLK-SLPSNL-SAEKLMLLEVPDSDIK-RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT  134 (312)
Q Consensus        58 ~~L~~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  134 (312)
                      ++|++|++++|.+. .+|..+ .+++|+.|++++|.+. .+|..+..+++|+.|...... +...+|.  .++.+++|++
T Consensus       418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~--~l~~l~~L~~  494 (768)
T 3rgz_A          418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTGEIPS--GLSNCTNLNW  494 (768)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCCG--GGGGCTTCCE
T ss_pred             CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCc-ccCcCCH--HHhcCCCCCE
Confidence            45555555555443 223322 4555555555555554 344455555555532222110 1223333  5566666666


Q ss_pred             EEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccc-cchHH-----------------
Q 047461          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-ELPSS-----------------  194 (312)
Q Consensus       135 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~-----------------  194 (312)
                      |++++|.+.+.+|..+..+++|++|++++|...+.+|...  .++|+.|++++|.++ .+|..                 
T Consensus       495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~  574 (768)
T 3rgz_A          495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR  574 (768)
T ss_dssp             EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCE
T ss_pred             EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccc
Confidence            6666666555666666666666666666655444444332  356666666666554 33322                 


Q ss_pred             -----------------------------------------------------HHhcCCCCEEecCCCCCCCcCchhhhc
Q 047461          195 -----------------------------------------------------IERLLRLGYLDLSDCKRLKSLPSSLYR  221 (312)
Q Consensus       195 -----------------------------------------------------~~~l~~L~~L~l~~n~~~~~~~~~l~~  221 (312)
                                                                           ++.+++|+.|++++|++.+.+|..++.
T Consensus       575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~  654 (768)
T 3rgz_A          575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS  654 (768)
T ss_dssp             EEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGG
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhc
Confidence                                                                 233567889999999999999999999


Q ss_pred             CCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccc
Q 047461          222 LKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRI  288 (312)
Q Consensus       222 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~  288 (312)
                      +++|+.|++++|.+.+.+|..++.+++|+.|++++|+++ .+|..+..+++|++|++++|++.|.+|.
T Consensus       655 l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~  722 (768)
T 3rgz_A          655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE  722 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred             cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence            999999999999999999999999999999999999999 8899999999999999999999887664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=7e-27  Score=215.06  Aligned_cols=158  Identities=16%  Similarity=0.149  Sum_probs=121.4

Q ss_pred             cCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCccccc---chHHHHhcCCCCEEecCCCCCCCcCchh-hhcCCC
Q 047461          151 FNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE---LPSSIERLLRLGYLDLSDCKRLKSLPSS-LYRLKS  224 (312)
Q Consensus       151 ~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~---l~~~~~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~  224 (312)
                      ..+++|++|++++|...+..|...  .++|+.|++++|.+++   +|..++.+++|++|++++|.+.+.+|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            456777888888865544344332  4688899998888885   4456788889999999998887756653 667788


Q ss_pred             CCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhh
Q 047461          225 LGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQ  304 (312)
Q Consensus       225 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~  304 (312)
                      |+.|++++|.+.+..|..+.  ++|+.|++++|.++.+|..+..+++|++|++++|++.+ .+...+..++.++.++...
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcC
Confidence            99999998888777776543  78999999999999999888899999999999999885 4433456777777777777


Q ss_pred             cceeeec
Q 047461          305 EVWLNVC  311 (312)
Q Consensus       305 ~~~~~~~  311 (312)
                      ++|.|.|
T Consensus       478 N~~~c~c  484 (520)
T 2z7x_B          478 NPWDCSC  484 (520)
T ss_dssp             SCBCCCH
T ss_pred             CCCcccC
Confidence            7777665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=9.5e-27  Score=206.65  Aligned_cols=287  Identities=11%  Similarity=0.092  Sum_probs=199.0

Q ss_pred             eEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCc-c-CcCC
Q 047461            5 IEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN-L-SAEK   81 (312)
Q Consensus         5 i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~-~l~~   81 (312)
                      ++.+.+.-+..  .......|.++++|++|+++++.+.      ...+..+.. ++|++|++++|.+..++.. + .+++
T Consensus        47 l~~l~l~~~~l--~~l~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  118 (390)
T 3o6n_A           47 QKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL  118 (390)
T ss_dssp             CSEEEEESCEE--SEECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             ceEEEecCCch--hhCChhHhcccccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence            34444443322  2233456778888888888887641      122234455 7888999888888777654 3 7888


Q ss_pred             ccEEeCCCCcccchhhh-cccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEe
Q 047461           82 LMLLEVPDSDIKRLWDC-VKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLD  160 (312)
Q Consensus        82 L~~L~l~~~~~~~~~~~-~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  160 (312)
                      |++|++++|.++.++.. +..+++|+.|......  +..++. ..++.+++|++|++++|.+... +  +..+++|++|+
T Consensus       119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~--~~~l~~L~~L~  192 (390)
T 3o6n_A          119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LERIED-DTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHAN  192 (390)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCBCCT-TTTSSCTTCCEEECCSSCCSBC-C--GGGCTTCSEEE
T ss_pred             CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc--cCccCh-hhccCCCCCCEEECCCCcCCcc-c--cccccccceee
Confidence            88999988888887765 4778888844333211  222221 2577888888888888874432 2  33445555554


Q ss_pred             ccCCC------------------CCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcC
Q 047461          161 LSGCS------------------KLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRL  222 (312)
Q Consensus       161 l~~~~------------------~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l  222 (312)
                      +++|.                  .+..+|.....+|+.|++++|.+++. ..++.+++|++|++++|.+.+..|..+..+
T Consensus       193 l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l  271 (390)
T 3o6n_A          193 VSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKM  271 (390)
T ss_dssp             CCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTC
T ss_pred             cccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHcccc
Confidence            44432                  22222322235788888888888876 467888999999999999888888889999


Q ss_pred             CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHh
Q 047461          223 KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEI  302 (312)
Q Consensus       223 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  302 (312)
                      ++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+|..+..+++|++|++++|++.+. ++.   .++.++.++.
T Consensus       272 ~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~---~~~~L~~L~l  346 (390)
T 3o6n_A          272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLS---THHTLKNLTL  346 (390)
T ss_dssp             SSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-CCC---TTCCCSEEEC
T ss_pred             ccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-Cch---hhccCCEEEc
Confidence            99999999998764 466666788999999999999998888889999999999999998764 333   4555555555


Q ss_pred             hhcceeeec
Q 047461          303 WQEVWLNVC  311 (312)
Q Consensus       303 ~~~~~~~~~  311 (312)
                      ..++|.+.|
T Consensus       347 ~~N~~~~~~  355 (390)
T 3o6n_A          347 SHNDWDCNS  355 (390)
T ss_dssp             CSSCEEHHH
T ss_pred             CCCCccchh
Confidence            555555443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=4e-27  Score=226.14  Aligned_cols=291  Identities=19%  Similarity=0.219  Sum_probs=198.6

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeecccccccccccc-------------------ccCCCCCC---CCcc
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKM-------------------SYLQDPGF---AEVK   61 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------------------~~~~~~~~---~~L~   61 (312)
                      +++.+++..+... .......|.++++|++|++++|.+.+......                   ..+..+..   ++|+
T Consensus       319 ~L~~L~L~~n~l~-~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~  397 (768)
T 3rgz_A          319 LLESLALSSNNFS-GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ  397 (768)
T ss_dssp             TCCEEECCSSEEE-EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred             CccEEECCCCccc-CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence            4455554443321 12223447788888888888876422110000                   01111111   3456


Q ss_pred             EEeeCCCCCC-CCCCcc-CcCCccEEeCCCCccc-chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461           62 YLHWHGYPLK-SLPSNL-SAEKLMLLEVPDSDIK-RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR  138 (312)
Q Consensus        62 ~L~l~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  138 (312)
                      +|++++|.+. .+|..+ .+++|++|++++|.+. .+|..+..+++|+.|...... +...++.  .++.+++|++|+++
T Consensus       398 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~--~~~~l~~L~~L~L~  474 (768)
T 3rgz_A          398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-LEGEIPQ--ELMYVKTLETLILD  474 (768)
T ss_dssp             EEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CCSCCCG--GGGGCTTCCEEECC
T ss_pred             EEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-ccCcCCH--HHcCCCCceEEEec
Confidence            6666665544 334333 5667777777777666 455666667777743332211 1234444  67778888888888


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcC
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSL  215 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~  215 (312)
                      +|.+.+.+|..+..+++|++|++++|...+.+|...  .++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+
T Consensus       475 ~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i  554 (768)
T 3rgz_A          475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI  554 (768)
T ss_dssp             SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred             CCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence            888777888888888888888888877666677553  578889999998887 57788888889999999988877666


Q ss_pred             chhhh----------------------------------------------------------------------cCCCC
Q 047461          216 PSSLY----------------------------------------------------------------------RLKSL  225 (312)
Q Consensus       216 ~~~l~----------------------------------------------------------------------~l~~L  225 (312)
                      |..++                                                                      .+++|
T Consensus       555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L  634 (768)
T 3rgz_A          555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM  634 (768)
T ss_dssp             CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred             ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence            65432                                                                      34678


Q ss_pred             CeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccccccCCCCchhH
Q 047461          226 GVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRW  299 (312)
Q Consensus       226 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  299 (312)
                      +.|++++|.+.+.+|..++.+++|+.|++++|.++ .+|..++.+++|+.|+|++|++.+..+. .+..++.++.
T Consensus       635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~  708 (768)
T 3rgz_A          635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ-AMSALTMLTE  708 (768)
T ss_dssp             CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG-GGGGCCCCSE
T ss_pred             cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCE
Confidence            89999999999999999999999999999999999 8999999999999999999999876553 2233444443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.7e-26  Score=216.30  Aligned_cols=293  Identities=18%  Similarity=0.127  Sum_probs=182.9

Q ss_pred             eEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC-cc-CcCC
Q 047461            5 IEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS-NL-SAEK   81 (312)
Q Consensus         5 i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~-~l~~   81 (312)
                      ++.+.+.  ++...+.....|+.+++|++|++++|.+       ..++..+.. ++|++|++++|.+..++. .+ .+++
T Consensus       256 L~~L~l~--~n~l~~~~~~~~~~l~~L~~L~l~~n~l-------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  326 (606)
T 3t6q_A          256 VESINLQ--KHYFFNISSNTFHCFSGLQELDLTATHL-------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS  326 (606)
T ss_dssp             EEEEECT--TCCCSSCCTTTTTTCTTCSEEECTTSCC-------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred             eeEEEee--cCccCccCHHHhccccCCCEEeccCCcc-------CCCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence            4444444  3333445556788899999999998775       244556666 889999999888776643 22 7788


Q ss_pred             ccEEeCCCCccc-chhh-hcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461           82 LMLLEVPDSDIK-RLWD-CVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT  157 (312)
Q Consensus        82 L~~L~l~~~~~~-~~~~-~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  157 (312)
                      |++|++++|.+. .++. .+..+++|+.  ++.+.... ....+.  .++.+++|++|++++|.+.+..|..+..+++|+
T Consensus       327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  403 (606)
T 3t6q_A          327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNL--QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE  403 (606)
T ss_dssp             CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEESTT--TTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred             CCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc-ccCcch--hcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence            888888888766 4443 3667777774  33333211 111133  566777777777777776555566666777777


Q ss_pred             EEeccCCCCCCCCCcc--c-cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCc---CchhhhcCCCCCeEec
Q 047461          158 KLDLSGCSKLKRLPEI--S-SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKS---LPSSLYRLKSLGVLSL  230 (312)
Q Consensus       158 ~L~l~~~~~l~~~p~~--~-~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~---~~~~l~~l~~L~~L~l  230 (312)
                      +|++++|......+..  . .++|+.|++++|.++.. |..++.+++|++|++++|.+.+.   .+..+..+++|+.|++
T Consensus       404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L  483 (606)
T 3t6q_A          404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL  483 (606)
T ss_dssp             EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred             eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence            7777775543332221  1 35677777777776653 34566677777777777766542   2234666677777777


Q ss_pred             cCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceee
Q 047461          231 CGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLN  309 (312)
Q Consensus       231 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (312)
                      ++|.+.+..|..+..+++|+.|++++|+++ ..|..+..++.| +|++++|++.+..+ ..+..++.++.++...++|.|
T Consensus       484 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~c  561 (606)
T 3t6q_A          484 SFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP-SLLPILSQQRTINLRQNPLDC  561 (606)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG-GGHHHHHTSSEEECTTCCEEC
T ss_pred             CCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH-hhcccCCCCCEEeCCCCCccc
Confidence            777666666666677777777777777776 445566667777 77777776664322 222334444444445555555


Q ss_pred             ec
Q 047461          310 VC  311 (312)
Q Consensus       310 ~~  311 (312)
                      .|
T Consensus       562 ~c  563 (606)
T 3t6q_A          562 TC  563 (606)
T ss_dssp             SG
T ss_pred             cC
Confidence            44

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.7e-26  Score=214.47  Aligned_cols=294  Identities=14%  Similarity=0.124  Sum_probs=202.6

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCc
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKL   82 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L   82 (312)
                      +++.+++..+..  .......|.++++|++|++++|.+.      ...+..+.. ++|++|++++|.+..+|.. .+++|
T Consensus        53 ~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~------~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L  123 (562)
T 3a79_B           53 RTKALSLSQNSI--SELRMPDISFLSELRVLRLSHNRIR------SLDFHVFLFNQDLEYLDVSHNRLQNISCC-PMASL  123 (562)
T ss_dssp             TCCEEECCSSCC--CCCCGGGTTTCTTCCEEECCSCCCC------EECTTTTTTCTTCCEEECTTSCCCEECSC-CCTTC
T ss_pred             CcCEEECCCCCc--cccChhhhccCCCccEEECCCCCCC------cCCHHHhCCCCCCCEEECCCCcCCccCcc-ccccC
Confidence            455555554443  3444578889999999999988752      222445555 8899999999988888877 78889


Q ss_pred             cEEeCCCCcccchh--hhcccCCCchh--cchhhccc--------c--------------cccCCCCCCcCC--------
Q 047461           83 MLLEVPDSDIKRLW--DCVKHYSKLNQ--IIHAACHK--------L--------------IAKIPNPTLMPR--------  128 (312)
Q Consensus        83 ~~L~l~~~~~~~~~--~~~~~l~~L~~--l~~~~~~~--------~--------------~~~~~~~~~~~~--------  128 (312)
                      ++|++++|.+..++  ..+..+++|+.  ++.+....        +              ....+.  .+..        
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~--~l~~l~~~~l~l  201 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETE--SLQIPNTTVLHL  201 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCC--EEEECCEEEEEE
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcc--cccccCcceEEE
Confidence            99999988888654  56777888773  33322110        0              000000  1111        


Q ss_pred             ------------------C-------------------------------------------------------cCCcEE
Q 047461          129 ------------------L-------------------------------------------------------NKLVTL  135 (312)
Q Consensus       129 ------------------l-------------------------------------------------------~~L~~L  135 (312)
                                        +                                                       ++|++|
T Consensus       202 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L  281 (562)
T 3a79_B          202 VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL  281 (562)
T ss_dssp             EECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEE
T ss_pred             EecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEE
Confidence                              1                                                       145555


Q ss_pred             EcCCCCcCccccccc-----------------------------------------------------cCCCcCcEEecc
Q 047461          136 NLRGSKSLKSLPSGI-----------------------------------------------------FNLEFLTKLDLS  162 (312)
Q Consensus       136 ~l~~~~~~~~~~~~l-----------------------------------------------------~~~~~L~~L~l~  162 (312)
                      ++++|.+.+.+|..+                                                     ..+++|++|+++
T Consensus       282 ~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~  361 (562)
T 3a79_B          282 NIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFT  361 (562)
T ss_dssp             EEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECC
T ss_pred             EEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECC
Confidence            555555444555433                                                     456778888888


Q ss_pred             CCCCCCCCCccc--cCCCCeEEcCCcccccch---HHHHhcCCCCEEecCCCCCCCcCch-hhhcCCCCCeEeccCCCCC
Q 047461          163 GCSKLKRLPEIS--SGNISWLFLRGIAIEELP---SSIERLLRLGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCSNL  236 (312)
Q Consensus       163 ~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~---~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~~~  236 (312)
                      +|...+..|...  .++|+.|++++|.+++++   ..++.+++|++|++++|++.+.+|. .+..+++|+.|++++|.+.
T Consensus       362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~  441 (562)
T 3a79_B          362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT  441 (562)
T ss_dssp             SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCC
T ss_pred             CCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCC
Confidence            865554444332  468889999988888654   4567888899999999888775554 4667788999999988887


Q ss_pred             CcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461          237 QRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       237 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      +..|..+.  ++|+.|++++|.++.+|..+..+++|++|++++|++.+ .+...+..++.++.++...++|.|.|
T Consensus       442 ~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          442 GSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             GGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             cchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            76665443  68999999999999999888899999999999999885 34334567777777777777777766

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.95  E-value=1.2e-26  Score=211.29  Aligned_cols=268  Identities=17%  Similarity=0.151  Sum_probs=177.0

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcC
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAE   80 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~   80 (312)
                      .++.++|..+...  ......|.++++|++|++++|.+      ....+..+.. ++|++|++++|.+..++...  .++
T Consensus        33 ~l~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  104 (477)
T 2id5_A           33 ETRLLDLGKNRIK--TLNQDEFASFPHLEELELNENIV------SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS  104 (477)
T ss_dssp             TCSEEECCSSCCC--EECTTTTTTCTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred             CCcEEECCCCccc--eECHhHccCCCCCCEEECCCCcc------CEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence            3455555544433  33346788888999999988764      2222445555 78888888888888777642  778


Q ss_pred             CccEEeCCCCcccchh-hhcccCCCchhcc--hhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcc------------
Q 047461           81 KLMLLEVPDSDIKRLW-DCVKHYSKLNQII--HAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKS------------  145 (312)
Q Consensus        81 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~l~--~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------  145 (312)
                      +|++|++++|.+..++ ..+..+++|+.|.  .+...   ...+.  .++.+++|++|++++|.+...            
T Consensus       105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  179 (477)
T 2id5_A          105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV---YISHR--AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLI  179 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC---EECTT--SSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCC
T ss_pred             CCCEEECCCCccccCChhHccccccCCEEECCCCccc---eeChh--hccCCCCCCEEECCCCcCcccChhHhcccCCCc
Confidence            8888888888887653 4567777777443  33321   11222  455566666666666653322            


Q ss_pred             ------------ccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCC
Q 047461          146 ------------LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCK  210 (312)
Q Consensus       146 ------------~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~  210 (312)
                                  .+..+..+++|+.|++++|.....+|...  ..+|+.|++++|.++.+|. .++.+++|++|++++|.
T Consensus       180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence                        22234444555555555544444333322  2367778888888877774 56777888888888887


Q ss_pred             CCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCCc
Q 047461          211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++..
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            776666667778888888888887777777777888888888888888886654 45677888888888887754

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.94  E-value=3.1e-26  Score=214.12  Aligned_cols=272  Identities=11%  Similarity=0.077  Sum_probs=196.7

Q ss_pred             CCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccchh
Q 047461           20 PNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRLW   96 (312)
Q Consensus        20 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~   96 (312)
                      .....|.++++|++|++++|.+.      ...+..+.. ++|++|++++|.+..++...  .+++|++|++++|.+..+|
T Consensus        66 lp~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~  139 (597)
T 3oja_B           66 LPAALLDSFRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP  139 (597)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCHHHHccCCCCcEEECCCCCCC------CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC
Confidence            34456778888899988887642      222234555 78899999888887776543  7888899999988888877


Q ss_pred             hh-cccCCCchhc--chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCC--------
Q 047461           97 DC-VKHYSKLNQI--IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS--------  165 (312)
Q Consensus        97 ~~-~~~l~~L~~l--~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~--------  165 (312)
                      .. +..+++|+.|  +.+..   ....+.  .++.+++|++|++++|.+.+. +  +..+++|++|++++|.        
T Consensus       140 ~~~~~~l~~L~~L~Ls~N~l---~~~~~~--~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~l~~l~~~~  211 (597)
T 3oja_B          140 RGIFHNTPKLTTLSMSNNNL---ERIEDD--TFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNLLSTLAIPI  211 (597)
T ss_dssp             TTTTTTCTTCCEEECCSSCC---CBCCTT--TTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSCCSEEECCT
T ss_pred             HHHhccCCCCCEEEeeCCcC---CCCChh--hhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCccccccCCc
Confidence            55 5788888844  44432   222333  677888888888888875432 2  2345555555554432        


Q ss_pred             ----------CCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCC
Q 047461          166 ----------KLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSN  235 (312)
Q Consensus       166 ----------~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~  235 (312)
                                .+..++.....+|+.|++++|.+++. ..++.+++|+.|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus       212 ~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          212 AVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             TCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC
T ss_pred             hhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC
Confidence                      12222222235788888888888875 5678899999999999999888888899999999999999876


Q ss_pred             CCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461          236 LQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       236 ~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      .+ +|..+..+++|+.|++++|.++.+|..+..+++|++|++++|.+.+. ++.   .++.++.++...+.|.+.|
T Consensus       291 ~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~-~~~---~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          291 VA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-KLS---THHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-CCC---TTCCCSEEECCSSCEEHHH
T ss_pred             CC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc-Chh---hcCCCCEEEeeCCCCCChh
Confidence            55 67777789999999999999999998899999999999999998764 333   4555555555555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=1.9e-26  Score=199.83  Aligned_cols=221  Identities=24%  Similarity=0.345  Sum_probs=172.8

Q ss_pred             CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEE
Q 047461           58 AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLN  136 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~  136 (312)
                      .++++|+++++.+..+|..+ .+++|++|++++|.+..+|..+..+++|+.|......  +..+|.  .++.+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~--l~~lp~--~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP--LRALPA--SIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC--CCCCCG--GGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc--cccCcH--HHhcCcCCCEEE
Confidence            45677777777776666644 6677777777777777666666667777633322211  234554  677788888888


Q ss_pred             cCCCCcCccccccccC---------CCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEe
Q 047461          137 LRGSKSLKSLPSGIFN---------LEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLD  205 (312)
Q Consensus       137 l~~~~~~~~~~~~l~~---------~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~  205 (312)
                      +++|...+.+|..+..         +++|++|++++|. +..+|...  .++|+.|++++|.++.+|..++.+++|++|+
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELD  235 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEE
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEE
Confidence            8887777777776544         8888889888854 44666543  5688899999999988888888999999999


Q ss_pred             cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCC
Q 047461          206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                      +++|.+.+.+|..++.+++|+.|++++|+..+.+|..+..+++|+.|++++|.+. .+|+.++.+++|+.+++..+.+.
T Consensus       236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            9999999999998999999999999999999999999999999999999998876 89999999999999998877554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=4.9e-25  Score=192.53  Aligned_cols=269  Identities=14%  Similarity=0.171  Sum_probs=173.3

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCc
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKL   82 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L   82 (312)
                      +++.+.+..+....+    ..+..+++|++|++++|.+.+.       +. +.. ++|++|++++|.+..++....+++|
T Consensus        45 ~L~~L~l~~~~i~~~----~~~~~~~~L~~L~l~~n~i~~~-------~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L  112 (347)
T 4fmz_A           45 SITKLVVAGEKVASI----QGIEYLTNLEYLNLNGNQITDI-------SP-LSNLVKLTNLYIGTNKITDISALQNLTNL  112 (347)
T ss_dssp             TCSEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             cccEEEEeCCccccc----hhhhhcCCccEEEccCCccccc-------hh-hhcCCcCCEEEccCCcccCchHHcCCCcC
Confidence            455666554443322    2377788888888888764221       11 344 7788888888877777655577788


Q ss_pred             cEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCC----------------------cCCcEEEcCCC
Q 047461           83 MLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL----------------------NKLVTLNLRGS  140 (312)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l----------------------~~L~~L~l~~~  140 (312)
                      ++|++++|.+..++. +..+++|+.+....+.. ...+ .  .+..+                      ++|++|++++|
T Consensus       113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~-~~~~-~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n  187 (347)
T 4fmz_A          113 RELYLNEDNISDISP-LANLTKMYSLNLGANHN-LSDL-S--PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYN  187 (347)
T ss_dssp             SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTT-CCCC-G--GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTS
T ss_pred             CEEECcCCcccCchh-hccCCceeEEECCCCCC-cccc-c--chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCC
Confidence            888888887776654 56666666443333211 1111 1  23444                      44555555544


Q ss_pred             CcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhh
Q 047461          141 KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSL  219 (312)
Q Consensus       141 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l  219 (312)
                      .+ ..++. +..+++|+.+++++|. +...+... .++|+.|++++|.++.++. +..+++|++|++++|.+.+.  ..+
T Consensus       188 ~l-~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~~  261 (347)
T 4fmz_A          188 QI-EDISP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI--NAV  261 (347)
T ss_dssp             CC-CCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC--GGG
T ss_pred             cc-ccccc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC--hhH
Confidence            42 22222 4445555555555532 22223222 4678888888888887776 77788888888888876553  347


Q ss_pred             hcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccccccCCCCch
Q 047461          220 YRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAV  297 (312)
Q Consensus       220 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  297 (312)
                      ..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++ ..+..+..+++|++|++++|++.+..++..++.+..+
T Consensus       262 ~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L  338 (347)
T 4fmz_A          262 KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA  338 (347)
T ss_dssp             TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEE
T ss_pred             hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhcccee
Confidence            7888899999988876553  35778899999999999988 4556788899999999999999887775544444443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=7.7e-26  Score=204.71  Aligned_cols=277  Identities=16%  Similarity=0.118  Sum_probs=199.5

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCC--CCC--cc
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKS--LPS--NL   77 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~--~~~--~~   77 (312)
                      .+++.+.+..+... .......|.++++|++|++++|.+      ....+..+.. ++|++|++++|.+..  ++.  ..
T Consensus        54 ~~L~~L~L~~n~~~-~~i~~~~~~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  126 (455)
T 3v47_A           54 QDLQFLKVEQQTPG-LVIRNNTFRGLSSLIILKLDYNQF------LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK  126 (455)
T ss_dssp             TTCCEEECCCCSTT-CEECTTTTTTCTTCCEEECTTCTT------CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred             ccccEEECcCCccc-ceECcccccccccCCEEeCCCCcc------CccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence            34556665544331 123346788899999999998774      2223455555 888899988888764  222  22


Q ss_pred             CcCCccEEeCCCCcccch-hhh-cccCCCchh--cchhhccccccc----------------------CCC-------CC
Q 047461           78 SAEKLMLLEVPDSDIKRL-WDC-VKHYSKLNQ--IIHAACHKLIAK----------------------IPN-------PT  124 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~-~~~-~~~l~~L~~--l~~~~~~~~~~~----------------------~~~-------~~  124 (312)
                      .+++|++|++++|.+..+ |.. +..+++|+.  ++.+........                      ++.       ..
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  206 (455)
T 3v47_A          127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG  206 (455)
T ss_dssp             TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHC
T ss_pred             CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccc
Confidence            778888888888888865 443 677888884  443332111000                      000       00


Q ss_pred             CcCCCcCCcEEEcCCCCcCcccccccc---------------------------------------CCCcCcEEeccCCC
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIF---------------------------------------NLEFLTKLDLSGCS  165 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~---------------------------------------~~~~L~~L~l~~~~  165 (312)
                      .+..+++|++|++++|.+.+..|..+.                                       ..++|++|++++|.
T Consensus       207 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~  286 (455)
T 3v47_A          207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK  286 (455)
T ss_dssp             CTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred             cccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence            122446899999999876544332221                                       12578899999866


Q ss_pred             CCCCCCccc--cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhh
Q 047461          166 KLKRLPEIS--SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPEC  242 (312)
Q Consensus       166 ~l~~~p~~~--~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~  242 (312)
                      ..+..|...  .++|+.|++++|.++++ |..++.+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..|..
T Consensus       287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  366 (455)
T 3v47_A          287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS  366 (455)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTT
T ss_pred             ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhh
Confidence            544444332  57899999999999987 457889999999999999998888888999999999999999988888999


Q ss_pred             hhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCCccc
Q 047461          243 LGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       243 ~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~  286 (312)
                      +..+++|+.|++++|+++.+|. .+..+++|++|++++|++.+..
T Consensus       367 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          367 FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            9999999999999999997775 4688999999999999987643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.94  E-value=2e-25  Score=203.20  Aligned_cols=245  Identities=18%  Similarity=0.169  Sum_probs=165.8

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC---------
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL---------   73 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~---------   73 (312)
                      +++.+.|..+...  ......|.++++|++|++++|.+....      ...+.. ++|++|++++|.+..+         
T Consensus        57 ~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  128 (477)
T 2id5_A           57 HLEELELNENIVS--AVEPGAFNNLFNLRTLGLRSNRLKLIP------LGVFTGLSNLTKLDISENKIVILLDYMFQDLY  128 (477)
T ss_dssp             TCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCSCC------TTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             CCCEEECCCCccC--EeChhhhhCCccCCEEECCCCcCCccC------cccccCCCCCCEEECCCCccccCChhHccccc
Confidence            4555555444332  223456777777777777776542110      111222 4555555555544433         


Q ss_pred             ---------------CC-cc-CcCCccEEeCCCCcccchhh-hcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461           74 ---------------PS-NL-SAEKLMLLEVPDSDIKRLWD-CVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL  135 (312)
Q Consensus        74 ---------------~~-~~-~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  135 (312)
                                     +. .+ .+++|++|++++|.++.++. .+..+++|+.|...... +....+.  .+..+++|++|
T Consensus       129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~--~~~~l~~L~~L  205 (477)
T 2id5_A          129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDY--SFKRLYRLKVL  205 (477)
T ss_dssp             TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTT--CSCSCTTCCEE
T ss_pred             cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChh--hcccCccccee
Confidence                           22 11 44455555555555544432 34455555532222110 0111222  67788999999


Q ss_pred             EcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCC
Q 047461          136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKR  211 (312)
Q Consensus       136 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~  211 (312)
                      ++++|...+.++.......+|++|++++|. +..+|...   .++|+.|++++|.++.++. .+..+++|++|++++|++
T Consensus       206 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  284 (477)
T 2id5_A          206 EISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL  284 (477)
T ss_dssp             EEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred             eCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence            999998888888877777899999999964 55666422   5789999999999998764 477899999999999999


Q ss_pred             CCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          212 LKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       212 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      .+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus       285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            8888888999999999999999887777777888999999999999987

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.94  E-value=1.2e-25  Score=211.52  Aligned_cols=269  Identities=15%  Similarity=0.137  Sum_probs=119.7

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccc-ccc-cccccc-----------------------ccCC--CC
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSL-FNG-ENKCKM-----------------------SYLQ--DP   55 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~-----------------------~~~~--~~   55 (312)
                      .+++.+.+..+..  .+..+..|+++++|++|++++|. +.+ .-+...                       .++.  .+
T Consensus       249 ~~L~~L~L~~n~l--~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l  326 (636)
T 4eco_A          249 KDLTDVEVYNCPN--LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL  326 (636)
T ss_dssp             TTCCEEEEECCTT--CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHH
T ss_pred             CCCCEEEecCCcC--CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhh
Confidence            4556666655443  33445677888888888888876 533 100000                       1122  22


Q ss_pred             CC-CCccEEeeCCCCCC-CCCCccCcCCccEEeCCCCcccchhhhcccCCC-chh--cchhhcccccccCCCCCCcCCC-
Q 047461           56 GF-AEVKYLHWHGYPLK-SLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSK-LNQ--IIHAACHKLIAKIPNPTLMPRL-  129 (312)
Q Consensus        56 ~~-~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~-L~~--l~~~~~~~~~~~~~~~~~~~~l-  129 (312)
                      .. ++|++|++++|.+. .+|....+++|++|++++|.+..+|..+..+++ |+.  ++.+.    +..+|.  .++.+ 
T Consensus       327 ~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~----l~~lp~--~~~~~~  400 (636)
T 4eco_A          327 QKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK----LKYIPN--IFDAKS  400 (636)
T ss_dssp             TTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC----CSSCCS--CCCTTC
T ss_pred             ccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc----Ccccch--hhhhcc
Confidence            22 44555555555444 444211444455555555554444444444544 542  22222    122332  33322 


Q ss_pred             -cCCcEEEcCCCCcCcccccccc-------CCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHHHHh-
Q 047461          130 -NKLVTLNLRGSKSLKSLPSGIF-------NLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIER-  197 (312)
Q Consensus       130 -~~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~~~~-  197 (312)
                       ++|++|++++|.+.+..|..+.       .+++|++|++++|. +..+|...   .++|+.|++++|.++.+|..... 
T Consensus       401 l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  479 (636)
T 4eco_A          401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD  479 (636)
T ss_dssp             SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE
T ss_pred             cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc
Confidence             2445555555444444443333       33444445544432 22333211   23444444444444444332111 


Q ss_pred             -------cCCCCEEecCCCCCCCcCchhhh--cCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc------CCCCc-c
Q 047461          198 -------LLRLGYLDLSDCKRLKSLPSSLY--RLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA------KTNIE-R  261 (312)
Q Consensus       198 -------l~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~------~n~l~-~  261 (312)
                             +++|++|++++|++. .+|..++  .+++|+.|++++|.+.+ +|..+..+++|+.|+++      +|.+. .
T Consensus       480 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~  557 (636)
T 4eco_A          480 ENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE  557 (636)
T ss_dssp             TTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred             ccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence                   114444444444433 3444443  44455555555544443 44444445555555552      23333 4


Q ss_pred             cchHhhccCCCcEEEecCCcC
Q 047461          262 IPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       262 ~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      +|..+..+++|++|++++|.+
T Consensus       558 ~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          558 WPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC
T ss_pred             ChHHHhcCCCCCEEECCCCcC
Confidence            444445555555555555544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.93  E-value=1.5e-25  Score=210.84  Aligned_cols=262  Identities=17%  Similarity=0.168  Sum_probs=211.2

Q ss_pred             cceEEEEeecCCccccCCCcc--hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc-C
Q 047461            3 EKIEGMCLDMSKVKELHPNSN--TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL-S   78 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~-~   78 (312)
                      .+++.+++..+...   ..+.  .|+++++|++|++++|.+.      ..++ .+.. ++|++|++++|.+..+|..+ .
T Consensus       305 ~~L~~L~L~~n~l~---~ip~~~~l~~l~~L~~L~L~~N~l~------g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~  374 (636)
T 4eco_A          305 EKIQIIYIGYNNLK---TFPVETSLQKMKKLGMLECLYNQLE------GKLP-AFGSEIKLASLNLAYNQITEIPANFCG  374 (636)
T ss_dssp             GTCCEEECCSSCCS---SCCCHHHHTTCTTCCEEECCSCCCE------EECC-CCEEEEEESEEECCSSEEEECCTTSEE
T ss_pred             CCCCEEECCCCcCC---ccCchhhhccCCCCCEEeCcCCcCc------cchh-hhCCCCCCCEEECCCCccccccHhhhh
Confidence            46677776655543   2344  7999999999999998752      2344 5555 89999999999988888766 7


Q ss_pred             cCC-ccEEeCCCCcccchhhhcccC--CCch--hcchhhcccccccCCCCCCcC-------CCcCCcEEEcCCCCcCccc
Q 047461           79 AEK-LMLLEVPDSDIKRLWDCVKHY--SKLN--QIIHAACHKLIAKIPNPTLMP-------RLNKLVTLNLRGSKSLKSL  146 (312)
Q Consensus        79 l~~-L~~L~l~~~~~~~~~~~~~~l--~~L~--~l~~~~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~~~  146 (312)
                      ++. |++|++++|.++.+|..+..+  ++|+  +++.+..   ....|.  .++       .+++|++|++++|.+. .+
T Consensus       375 l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l---~~~~p~--~l~~~~~~~~~~~~L~~L~Ls~N~l~-~l  448 (636)
T 4eco_A          375 FTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI---GSVDGK--NFDPLDPTPFKGINVSSINLSNNQIS-KF  448 (636)
T ss_dssp             ECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCT---TTTTTC--SSCTTCSSCCCCCCEEEEECCSSCCC-SC
T ss_pred             hcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcC---CCcchh--hhcccccccccCCCCCEEECcCCccC-cC
Confidence            888 999999999999888776654  4788  4444442   223333  555       6789999999999955 66


Q ss_pred             cccc-cCCCcCcEEeccCCCCCCCCCccccC----------CCCeEEcCCcccccchHHHH--hcCCCCEEecCCCCCCC
Q 047461          147 PSGI-FNLEFLTKLDLSGCSKLKRLPEISSG----------NISWLFLRGIAIEELPSSIE--RLLRLGYLDLSDCKRLK  213 (312)
Q Consensus       147 ~~~l-~~~~~L~~L~l~~~~~l~~~p~~~~~----------~L~~L~l~~~~l~~l~~~~~--~l~~L~~L~l~~n~~~~  213 (312)
                      |..+ ..+++|++|++++|. +..+|.....          +|+.|++++|.++.+|..+.  .+++|++|++++|++.+
T Consensus       449 p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~  527 (636)
T 4eco_A          449 PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK  527 (636)
T ss_dssp             CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred             CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC
Confidence            7654 458999999999965 4466654321          89999999999999998886  89999999999999887


Q ss_pred             cCchhhhcCCCCCeEecc------CCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          214 SLPSSLYRLKSLGVLSLC------GCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       214 ~~~~~l~~l~~L~~L~l~------~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                       +|..++.+++|+.|+++      +|.+.+.+|..+..+++|+.|++++|.++.+|..+.  ++|+.|++++|++..
T Consensus       528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCcc
Confidence             88889999999999994      567788999999999999999999999998988765  899999999998864

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.93  E-value=1.5e-24  Score=189.37  Aligned_cols=241  Identities=18%  Similarity=0.244  Sum_probs=155.0

Q ss_pred             chhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhccc
Q 047461           23 NTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKH  101 (312)
Q Consensus        23 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  101 (312)
                      ..+..+++|++|+++++.+        ...+.+.. ++|++|++++|.+..++....+++|++|++++|.+..++ .+..
T Consensus        38 ~~~~~l~~L~~L~l~~~~i--------~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~  108 (347)
T 4fmz_A           38 VTQEELESITKLVVAGEKV--------ASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQN  108 (347)
T ss_dssp             ECHHHHTTCSEEECCSSCC--------CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred             ccchhcccccEEEEeCCcc--------ccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcC
Confidence            3456789999999999664        22234555 899999999999998888558999999999999998874 5788


Q ss_pred             CCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCe
Q 047461          102 YSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISW  180 (312)
Q Consensus       102 l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~  180 (312)
                      +++|+.|......  +..++   .+..+++|++|++++|.....++. +..+++|++|++++|. +...+... .++|+.
T Consensus       109 l~~L~~L~l~~n~--i~~~~---~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~  181 (347)
T 4fmz_A          109 LTNLRELYLNEDN--ISDIS---PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTPIANLTDLYS  181 (347)
T ss_dssp             CTTCSEEECTTSC--CCCCG---GGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGGGCTTCSE
T ss_pred             CCcCCEEECcCCc--ccCch---hhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchhhccCCCCCE
Confidence            9999955443321  23333   377899999999999976665554 7788888888888854 33333332 467777


Q ss_pred             EEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc---------------------hhhhcCCCCCeEeccCCCCCCcc
Q 047461          181 LFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP---------------------SSLYRLKSLGVLSLCGCSNLQRL  239 (312)
Q Consensus       181 L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~---------------------~~l~~l~~L~~L~l~~~~~~~~~  239 (312)
                      |++++|.+++++. +..+++|+.+++++|.+.+..+                     . +..+++|++|++++|.+.+ +
T Consensus       182 L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~  258 (347)
T 4fmz_A          182 LSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISD-I  258 (347)
T ss_dssp             EECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-C
T ss_pred             EEccCCccccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCC-C
Confidence            7777777666554 4444555555555544333221                     1 4444555555555544332 2


Q ss_pred             hhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          240 PECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       240 p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                       ..+..+++|+.|++++|.++.++ .+..+++|++|++++|++.+
T Consensus       259 -~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~  301 (347)
T 4fmz_A          259 -NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGN  301 (347)
T ss_dssp             -GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCG
T ss_pred             -hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCC
Confidence             23445555555555555555442 34555555666666555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.93  E-value=4e-25  Score=206.98  Aligned_cols=249  Identities=16%  Similarity=0.097  Sum_probs=188.4

Q ss_pred             hhcCCCCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccch---hhhcc
Q 047461           24 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRL---WDCVK  100 (312)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~  100 (312)
                      .+..+++|++|++++|.+       ..++ .+..++|++|++++|..........+++|++|++++|.+...   +..+.
T Consensus       302 ~l~~~~~L~~L~l~~n~l-------~~lp-~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~  373 (606)
T 3vq2_A          302 DVPKHFKWQSLSIIRCQL-------KQFP-TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL  373 (606)
T ss_dssp             CCCTTCCCSEEEEESCCC-------SSCC-CCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred             hccccccCCEEEcccccC-------cccc-cCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhc
Confidence            345555666666666543       1122 222266777777666422222233677888888888887755   56677


Q ss_pred             cCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc-ccccCCCcCcEEeccCCCCCCCCCccc--cCC
Q 047461          101 HYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGN  177 (312)
Q Consensus       101 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~  177 (312)
                      .+++|+.|......  ...++.  .++.+++|++|++++|.+.+..+ ..+..+++|++|++++|......|...  .++
T Consensus       374 ~~~~L~~L~L~~n~--l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  449 (606)
T 3vq2_A          374 GTNSLRHLDLSFNG--AIIMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS  449 (606)
T ss_dssp             CCSCCCEEECCSCS--EEEECC--CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT
T ss_pred             cCCcccEeECCCCc--cccchh--hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC
Confidence            88888844433321  334455  78889999999999998666666 567789999999999977555444432  578


Q ss_pred             CCeEEcCCccccc--chHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461          178 ISWLFLRGIAIEE--LPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA  255 (312)
Q Consensus       178 L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  255 (312)
                      |+.|++++|.+++  +|..++.+++|++|++++|++.+..|..++.+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus       450 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~  529 (606)
T 3vq2_A          450 LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS  529 (606)
T ss_dssp             CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT
T ss_pred             CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECC
Confidence            9999999999886  67778889999999999999888888889999999999999999888889999999999999999


Q ss_pred             CCCCcccchHhhccC-CCcEEEecCCcCCc
Q 047461          256 KTNIERIPESIIQLF-VSGYLLLSYGIVED  284 (312)
Q Consensus       256 ~n~l~~~~~~l~~~~-~L~~L~l~~n~~~~  284 (312)
                      +|+++.+|..+..++ +|++|++++|++..
T Consensus       530 ~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c  559 (606)
T 3vq2_A          530 FNRIETSKGILQHFPKSLAFFNLTNNSVAC  559 (606)
T ss_dssp             TSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred             CCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence            999998888888887 59999999998865

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=6e-26  Score=195.52  Aligned_cols=245  Identities=17%  Similarity=0.208  Sum_probs=177.1

Q ss_pred             CCccEEeeCCCCCC---CCCCcc-CcCCccEEeCCC-Cccc-chhhhcccCCCchhcchhhcccccccCCCCCCcCCCcC
Q 047461           58 AEVKYLHWHGYPLK---SLPSNL-SAEKLMLLEVPD-SDIK-RLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNK  131 (312)
Q Consensus        58 ~~L~~L~l~~~~~~---~~~~~~-~l~~L~~L~l~~-~~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~  131 (312)
                      .+++.|+++++.+.   .+|..+ .+++|++|++++ |.+. .+|..+..+++|+.|...... +...++.  .++.+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-l~~~~p~--~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPD--FLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-CEEECCG--GGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-eCCcCCH--HHhCCCC
Confidence            35777777777765   355544 677788888874 6665 566677777777744332211 1224554  6777888


Q ss_pred             CcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cC-CCCeEEcCCcccc-cchHHHHhcCCCCEEecC
Q 047461          132 LVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SG-NISWLFLRGIAIE-ELPSSIERLLRLGYLDLS  207 (312)
Q Consensus       132 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~-~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~  207 (312)
                      |++|++++|.+.+.+|..+..+++|++|++++|...+.+|...  .. .|+.|++++|.++ .+|..++.+. |++|+++
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls  205 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS  205 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence            8888888888776778778888888888888866544555433  23 7888888888887 5667777776 8888888


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccc
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~  286 (312)
                      +|.+.+..+..++.+++|+.|++++|.+.+..|. +..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~i  284 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI  284 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccC
Confidence            8888777888888888888888888877766665 677888888888888888 77888888888888888888887665


Q ss_pred             cccccCCCCchhHHHhhhcceee
Q 047461          287 RIQHTNHTPAVRWQEIWQEVWLN  309 (312)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~  309 (312)
                      +..  .+++.++.++...+.+.+
T Consensus       285 p~~--~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          285 PQG--GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCS--TTGGGSCGGGTCSSSEEE
T ss_pred             CCC--ccccccChHHhcCCCCcc
Confidence            543  456667666665554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=8e-25  Score=210.39  Aligned_cols=263  Identities=15%  Similarity=0.133  Sum_probs=173.5

Q ss_pred             ceEEEEeecCCccccCCCcc--hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc-Cc
Q 047461            4 KIEGMCLDMSKVKELHPNSN--TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL-SA   79 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~-~l   79 (312)
                      +++.+.+..+...  . .+.  .|+++++|++|++++|.+     .  .++ .+.. ++|++|++++|.+..+|..+ .+
T Consensus       549 ~L~~L~Ls~N~L~--~-ip~~~~l~~L~~L~~L~Ls~N~l-----~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l  617 (876)
T 4ecn_A          549 KIQIFYMGYNNLE--E-FPASASLQKMVKLGLLDCVHNKV-----R--HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAF  617 (876)
T ss_dssp             TCCEEECCSSCCC--B-CCCHHHHTTCTTCCEEECTTSCC-----C--BCC-CCCTTSEESEEECCSSCCSCCCTTSCEE
T ss_pred             CccEEEeeCCcCC--c-cCChhhhhcCCCCCEEECCCCCc-----c--cch-hhcCCCcceEEECcCCccccchHHHhhc
Confidence            4555555544433  2 223  667777777777777654     1  233 4444 67777777777766666544 56


Q ss_pred             CC-ccEEeCCCCcccchhhhcccCCC--ch--hcchhhcccccccCCCCCCcC--CCcCCcEEEcCCCCcCcccccccc-
Q 047461           80 EK-LMLLEVPDSDIKRLWDCVKHYSK--LN--QIIHAACHKLIAKIPNPTLMP--RLNKLVTLNLRGSKSLKSLPSGIF-  151 (312)
Q Consensus        80 ~~-L~~L~l~~~~~~~~~~~~~~l~~--L~--~l~~~~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~l~-  151 (312)
                      ++ |+.|++++|.+..+|..+..++.  |+  +++.+........++.  .++  .+++|++|++++|.+. .+|..+. 
T Consensus       618 ~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~--~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~  694 (876)
T 4ecn_A          618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC--SMDDYKGINASTVTLSYNEIQ-KFPTELFA  694 (876)
T ss_dssp             CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS--CTTTCCCCCEEEEECCSSCCC-SCCHHHHH
T ss_pred             cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchh--hhccccCCCcCEEEccCCcCC-ccCHHHHc
Confidence            66 77777777777766655544433  66  3333332211111211  222  3347888888887744 5665443 


Q ss_pred             CCCcCcEEeccCCCCCCCCCcccc----------CCCCeEEcCCcccccchHHHH--hcCCCCEEecCCCCCCCcCchhh
Q 047461          152 NLEFLTKLDLSGCSKLKRLPEISS----------GNISWLFLRGIAIEELPSSIE--RLLRLGYLDLSDCKRLKSLPSSL  219 (312)
Q Consensus       152 ~~~~L~~L~l~~~~~l~~~p~~~~----------~~L~~L~l~~~~l~~l~~~~~--~l~~L~~L~l~~n~~~~~~~~~l  219 (312)
                      .+++|+.|++++|. +..+|....          ++|+.|++++|.++.+|..+.  .+++|+.|++++|++.+ +|..+
T Consensus       695 ~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          695 TGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             TTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGG
T ss_pred             cCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhh
Confidence            67888888888854 445554331          178888888888888887776  78888888888888766 67778


Q ss_pred             hcCCCCCeEeccC------CCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          220 YRLKSLGVLSLCG------CSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       220 ~~l~~L~~L~l~~------~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +.+++|+.|++++      |.+.+.+|..+..+++|+.|++++|.++.+|..+.  ++|+.|+|++|++..
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~  841 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNIS  841 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCE
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCc
Confidence            8888888888865      66677788888888888888888888887777654  688888888887754

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.93  E-value=2.8e-25  Score=213.48  Aligned_cols=267  Identities=15%  Similarity=0.126  Sum_probs=147.5

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccc-ccc-ccccccccC-CCCCC-CCccEEeeCCCCCCCCCC--c
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSL-FNG-ENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSLPS--N   76 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~--~   76 (312)
                      .+++.+.|..+..  ....+..|+++++|++|++++|. +.+ .-+...... ..+.. ++|++|++++|.+..+|.  .
T Consensus       491 ~~L~~L~Ls~N~l--~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  568 (876)
T 4ecn_A          491 KDLTDVELYNCPN--MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS  568 (876)
T ss_dssp             TTCCEEEEESCTT--CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred             CCCCEEECcCCCC--CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence            4566777665543  33445788899999999999886 533 111001000 02222 578888888887777776  3


Q ss_pred             c-CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcC-CcEEEcCCCCcCccccccccCCC
Q 047461           77 L-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNK-LVTLNLRGSKSLKSLPSGIFNLE  154 (312)
Q Consensus        77 ~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~l~~~~  154 (312)
                      + .+++|+.|++++|.+..+| .+..+++|+.|......  +..+|.  .+..+++ |++|++++|.+. .+|..+...+
T Consensus       569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~--l~~lp~--~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~  642 (876)
T 4ecn_A          569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ--IEEIPE--DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS  642 (876)
T ss_dssp             HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC--CSCCCT--TSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred             hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc--cccchH--HHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence            4 7778888888888777776 66777777743332211  234554  6677777 777777777743 6666554443


Q ss_pred             --cCcEEeccCCCCCCCCCccc-------cCCCCeEEcCCcccccchHHHH-hcCCCCEEecCCCCCCCcCchhhhcC--
Q 047461          155 --FLTKLDLSGCSKLKRLPEIS-------SGNISWLFLRGIAIEELPSSIE-RLLRLGYLDLSDCKRLKSLPSSLYRL--  222 (312)
Q Consensus       155 --~L~~L~l~~~~~l~~~p~~~-------~~~L~~L~l~~~~l~~l~~~~~-~l~~L~~L~l~~n~~~~~~~~~l~~l--  222 (312)
                        +|+.|++++|...+.+|...       ..+|+.|++++|.++.+|..+. .+++|+.|++++|++. .+|..+...  
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~  721 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD  721 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc
Confidence              36777777655433332211       1245566666666655555433 4555555555555443 333322211  


Q ss_pred             ------CCCCeEeccCCCCCCcchhhhh--CCCCCcEEeccCCCCcccchHhhccCCCcEEEecC
Q 047461          223 ------KSLGVLSLCGCSNLQRLPECLG--QLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSY  279 (312)
Q Consensus       223 ------~~L~~L~l~~~~~~~~~p~~~~--~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~  279 (312)
                            ++|+.|++++|.+. .+|..+.  .+++|+.|++++|.++.+|..+..+++|+.|+|++
T Consensus       722 ~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          722 GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH  785 (876)
T ss_dssp             SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred             ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence                  14555555554433 4444443  44455555555554444444444444444444433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=8.5e-26  Score=194.59  Aligned_cols=243  Identities=16%  Similarity=0.156  Sum_probs=192.7

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCC-CCCC-CCCCcc-CcCCccEEeCCCCccc-chhhhcccCC
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLK-SLPSNL-SAEKLMLLEVPDSDIK-RLWDCVKHYS  103 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~-~~~~-~~~~~~-~l~~L~~L~l~~~~~~-~~~~~~~~l~  103 (312)
                      .+++.|+++++.+.+.    ...+..+.. ++|++|++++ +.+. .+|..+ .+++|++|++++|.+. .+|..+..++
T Consensus        50 ~~l~~L~L~~~~l~~~----~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCC----cccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence            5788888888765220    034445555 7888888884 6644 455545 7888888888888887 6677788888


Q ss_pred             Cchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCC-cCcEEeccCCCCCCCCCccc-cCCCC
Q 047461          104 KLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLPEIS-SGNIS  179 (312)
Q Consensus       104 ~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~~~p~~~-~~~L~  179 (312)
                      +|+.  ++.+..   ...++.  .++.+++|++|++++|.+.+.+|..+..++ +|++|++++|...+..|... ...|+
T Consensus       126 ~L~~L~Ls~N~l---~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~  200 (313)
T 1ogq_A          126 TLVTLDFSYNAL---SGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA  200 (313)
T ss_dssp             TCCEEECCSSEE---ESCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS
T ss_pred             CCCEEeCCCCcc---CCcCCh--HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCccc
Confidence            8884  444442   224555  788899999999999997778898888887 99999999976554555443 23499


Q ss_pred             eEEcCCccccc-chHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCC
Q 047461          180 WLFLRGIAIEE-LPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTN  258 (312)
Q Consensus       180 ~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~  258 (312)
                      .|++++|.++. .|..++.+++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|+.|++++|+
T Consensus       201 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          201 FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             EEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence            99999999984 566788899999999999998777666 7888999999999999988999999999999999999999


Q ss_pred             Cc-ccchHhhccCCCcEEEecCCcC
Q 047461          259 IE-RIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       259 l~-~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      ++ .+|.. ..+++|+.+++++|+.
T Consensus       280 l~~~ip~~-~~l~~L~~l~l~~N~~  303 (313)
T 1ogq_A          280 LCGEIPQG-GNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred             ccccCCCC-ccccccChHHhcCCCC
Confidence            99 67765 8899999999999983

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.93  E-value=8.4e-25  Score=204.82  Aligned_cols=272  Identities=18%  Similarity=0.165  Sum_probs=143.5

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC--CCccCc
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL--PSNLSA   79 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~--~~~~~l   79 (312)
                      .+++.+++..+...  ...+..|+++++|++|++++|.+.+..      +..+.. ++|++|++++|.+..+  +....+
T Consensus        81 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~l~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  152 (606)
T 3t6q_A           81 HRLDTLVLTANPLI--FMAETALSGPKALKHLFFIQTGISSID------FIPLHNQKTLESLYLGSNHISSIKLPKGFPT  152 (606)
T ss_dssp             TTCCEEECTTCCCS--EECTTTTSSCTTCCEEECTTSCCSCGG------GSCCTTCTTCCEEECCSSCCCCCCCCTTCCC
T ss_pred             cccCeeeCCCCccc--ccChhhhcccccccEeeccccCcccCC------cchhccCCcccEEECCCCcccccCcccccCC
Confidence            45666666554432  334467888888999988887752221      223344 7788888888877665  444467


Q ss_pred             CCccEEeCCCCcccchh-hhcccCCCch--hc--chhhcccc--------------------------------------
Q 047461           80 EKLMLLEVPDSDIKRLW-DCVKHYSKLN--QI--IHAACHKL--------------------------------------  116 (312)
Q Consensus        80 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~--~l--~~~~~~~~--------------------------------------  116 (312)
                      ++|++|++++|.+..++ ..+..+++|+  .+  +.+.....                                      
T Consensus       153 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~  232 (606)
T 3t6q_A          153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL  232 (606)
T ss_dssp             TTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEEC
T ss_pred             cccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheec
Confidence            77788888777776542 3444454444  11  11110000                                      


Q ss_pred             ---------------------------------cccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccC
Q 047461          117 ---------------------------------IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSG  163 (312)
Q Consensus       117 ---------------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  163 (312)
                                                       +..++ +..++.+++|++|++++|. ...+|..+..+++|++|++++
T Consensus       233 ~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~  310 (606)
T 3t6q_A          233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS-SNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSA  310 (606)
T ss_dssp             CCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC-TTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTT
T ss_pred             hhhccccccccChhHhchhhcCceeEEEeecCccCccC-HHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEECcc
Confidence                                             00111 1124555666666666665 334555555555555555555


Q ss_pred             CC------------------------CCCCCCccc---cCCCCeEEcCCcccccc---hHHHHhcCCCCEEecCCCCCCC
Q 047461          164 CS------------------------KLKRLPEIS---SGNISWLFLRGIAIEEL---PSSIERLLRLGYLDLSDCKRLK  213 (312)
Q Consensus       164 ~~------------------------~l~~~p~~~---~~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~n~~~~  213 (312)
                      |.                        ....+|...   .++|++|++++|.++.+   +..++.+++|++|++++|.+.+
T Consensus       311 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  390 (606)
T 3t6q_A          311 NKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS  390 (606)
T ss_dssp             CCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE
T ss_pred             CCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc
Confidence            43                        222222211   34556666666655543   3345556666666666665555


Q ss_pred             cCchhhhcCCCCCeEeccCCCCCCcchh-hhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCc
Q 047461          214 SLPSSLYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       214 ~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      ..+..++.+++|+.|++++|.+.+..|. .+..+++|+.|++++|.++ ..|..+..+++|++|++++|++.+
T Consensus       391 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  463 (606)
T 3t6q_A          391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK  463 (606)
T ss_dssp             ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred             CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence            5555555555555555555544433322 2445555555555555554 233444555555555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.93  E-value=9.6e-24  Score=183.10  Aligned_cols=260  Identities=16%  Similarity=0.128  Sum_probs=198.2

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-CCcc-CcCCccEEeCCCCcccchhhhcccCCCc
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-PSNL-SAEKLMLLEVPDSDIKRLWDCVKHYSKL  105 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L  105 (312)
                      +++++|++++|.+.+      ..+..+.. ++|++|++++|.+..+ +..+ .+++|++|++++|.++.+|..+.  ++|
T Consensus        52 ~~l~~L~L~~n~i~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L  123 (330)
T 1xku_A           52 PDTALLDLQNNKITE------IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL  123 (330)
T ss_dssp             TTCCEEECCSSCCCC------BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred             CCCeEEECCCCcCCE------eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence            689999999987522      12234555 8999999999998887 4444 88999999999999998876543  677


Q ss_pred             hhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCc--cccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEc
Q 047461          106 NQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL  183 (312)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l  183 (312)
                      +.|......  +..++. ..++.+++|++|++++|.+..  ..+..+..+++|++|++++|. +..+|....++|+.|++
T Consensus       124 ~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l  199 (330)
T 1xku_A          124 QELRVHENE--ITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELHL  199 (330)
T ss_dssp             CEEECCSSC--CCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEEC
T ss_pred             cEEECCCCc--ccccCH-hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccccccCCEEEC
Confidence            744333211  222221 146789999999999998643  556678889999999999954 55566555579999999


Q ss_pred             CCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc
Q 047461          184 RGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI  262 (312)
Q Consensus       184 ~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  262 (312)
                      ++|.++.+ +..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+
T Consensus       200 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             TTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCcc
Confidence            99999976 567889999999999999988877778899999999999998765 7888899999999999999999976


Q ss_pred             chH-hh------ccCCCcEEEecCCcCCcc-ccccccCCCCchhHHH
Q 047461          263 PES-II------QLFVSGYLLLSYGIVEDT-LRIQHTNHTPAVRWQE  301 (312)
Q Consensus       263 ~~~-l~------~~~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~~  301 (312)
                      +.. +.      ..+.++.+++++|++... .....+..++.++.++
T Consensus       279 ~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~  325 (330)
T 1xku_A          279 GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ  325 (330)
T ss_dssp             CTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEE
T ss_pred             ChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEE
Confidence            643 32      247889999999998542 2223444556665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=2.4e-25  Score=192.89  Aligned_cols=216  Identities=25%  Similarity=0.286  Sum_probs=185.3

Q ss_pred             CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461           78 SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT  157 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  157 (312)
                      ....++.|++++|.+..+|..+..+++|+.|......  +..+|.  .++.+++|++|++++|.+. .+|..+..+++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~--l~~lp~--~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~  153 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG--LMELPD--TMQQFAGLETLTLARNPLR-ALPASIASLNRLR  153 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC--CCCCCS--CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCC
T ss_pred             cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCC--ccchhH--HHhccCCCCEEECCCCccc-cCcHHHhcCcCCC
Confidence            3478999999999999999888889999954443321  346666  8899999999999999855 8898899999999


Q ss_pred             EEeccCCCCCCCCCccc-----------cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCC
Q 047461          158 KLDLSGCSKLKRLPEIS-----------SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG  226 (312)
Q Consensus       158 ~L~l~~~~~l~~~p~~~-----------~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  226 (312)
                      +|++++|+..+.+|...           .++|++|++++|.++.+|..++.+++|++|++++|.+.+ +|..++.+++|+
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~  232 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCC
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCC
Confidence            99999998888877542           578999999999999999999999999999999998775 666799999999


Q ss_pred             eEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHH
Q 047461          227 VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQ  300 (312)
Q Consensus       227 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  300 (312)
                      +|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++.+..+. .+.+++.+++.
T Consensus       233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l  306 (328)
T 4fcg_A          233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCII  306 (328)
T ss_dssp             EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEE
T ss_pred             EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEE
Confidence            9999999999999999999999999999998876 8898999999999999999999886653 34456655544

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=8.9e-24  Score=191.80  Aligned_cols=243  Identities=18%  Similarity=0.209  Sum_probs=117.2

Q ss_pred             hcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCC
Q 047461           25 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS  103 (312)
Q Consensus        25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~  103 (312)
                      +..+++|++|++++|.+.+.       +. +.. ++|++|++++|.+..++....+++|++|++++|.+..++. +..++
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~-------~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~  134 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDI-------TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLT  134 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCC-------GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCT
T ss_pred             hhhhcCCCEEECCCCccCCc-------hh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCChH-HcCCC
Confidence            56677777777777654211       11 333 5666666666665555553356666666666666555433 44555


Q ss_pred             Cchhc--chhhccccc--------------ccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCC
Q 047461          104 KLNQI--IHAACHKLI--------------AKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKL  167 (312)
Q Consensus       104 ~L~~l--~~~~~~~~~--------------~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l  167 (312)
                      +|+.|  +.+......              ..+.....++.+++|++|++++|.+ ..++. +..+++|++|++++|...
T Consensus       135 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-l~~l~~L~~L~l~~n~l~  212 (466)
T 1o6v_A          135 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV-SDISV-LAKLTNLESLIATNNQIS  212 (466)
T ss_dssp             TCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC-CCCGG-GGGCTTCSEEECCSSCCC
T ss_pred             CCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC-CCChh-hccCCCCCEEEecCCccc
Confidence            55522  222211100              0000001355666777777777763 33332 556666666666664432


Q ss_pred             CCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC
Q 047461          168 KRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS  247 (312)
Q Consensus       168 ~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  247 (312)
                      ...|....++|+.|++++|.+++++ .+..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..++
T Consensus       213 ~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~  287 (466)
T 1o6v_A          213 DITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLT  287 (466)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             ccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCC
Confidence            2222111355666666666555543 24445555555555555443322  4444555555555544333222  33444


Q ss_pred             CCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          248 SPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       248 ~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +|+.|++++|.++.++. +..+++|+.|++++|++.+
T Consensus       288 ~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~  323 (466)
T 1o6v_A          288 ALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISD  323 (466)
T ss_dssp             TCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSC
T ss_pred             ccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCC
Confidence            44444444444443332 3344444444444444433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.92  E-value=5.6e-25  Score=205.99  Aligned_cols=271  Identities=15%  Similarity=0.078  Sum_probs=213.8

Q ss_pred             hcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCC
Q 047461           25 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS  103 (312)
Q Consensus        25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~  103 (312)
                      +..+++|+.|+++++.+       ...+ .+.. ++|++|++++|.+..+|.. .+++|++|++++|..... ..+..++
T Consensus       281 ~~~l~~L~~L~l~~~~~-------~~l~-~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~l~~n~~~~~-~~~~~l~  350 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSI-------KYLE-DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLTLTMNKGSIS-FKKVALP  350 (606)
T ss_dssp             CGGGTTCSEEEEESCCC-------CCCC-CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEEEESCSSCEE-CCCCCCT
T ss_pred             cccCCCCCEEEecCccc-------hhhh-hccccccCCEEEcccccCcccccC-CCCccceeeccCCcCccc-hhhccCC
Confidence            77889999999999764       1222 5555 8999999999999989966 899999999999854321 2456888


Q ss_pred             Cchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCC--ccc-cCCC
Q 047461          104 KLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLP--EIS-SGNI  178 (312)
Q Consensus       104 ~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p--~~~-~~~L  178 (312)
                      +|+.  ++.+.... ....+.  .++.+++|++|++++|. ...+|..+..+++|+.|++++|...+..|  ... .++|
T Consensus       351 ~L~~L~ls~n~l~~-~~~~~~--~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  426 (606)
T 3vq2_A          351 SLSYLDLSRNALSF-SGCCSY--SDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL  426 (606)
T ss_dssp             TCCEEECCSSCEEE-EEECCH--HHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred             CCCEEECcCCccCC-Ccchhh--hhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence            8884  44444221 111244  67889999999999998 55577778899999999999976444433  111 5799


Q ss_pred             CeEEcCCccccc-chHHHHhcCCCCEEecCCCCCCC-cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          179 SWLFLRGIAIEE-LPSSIERLLRLGYLDLSDCKRLK-SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       179 ~~L~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      +.|++++|.++. .|..++.+++|++|++++|.+.+ .+|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++
T Consensus       427 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  506 (606)
T 3vq2_A          427 LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH  506 (606)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence            999999999986 56678899999999999999877 4788889999999999999999888889999999999999999


Q ss_pred             CCCcc-cchHhhccCCCcEEEecCCcCCccccccccCCCC-chhHHHhhhcceeeec
Q 047461          257 TNIER-IPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTP-AVRWQEIWQEVWLNVC  311 (312)
Q Consensus       257 n~l~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  311 (312)
                      |+++. .|..+..+++|++|++++|++... +.. +..+| .++.++...++|.+.|
T Consensus       507 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-p~~-~~~l~~~L~~l~l~~N~~~c~c  561 (606)
T 3vq2_A          507 NNLLFLDSSHYNQLYSLSTLDCSFNRIETS-KGI-LQHFPKSLAFFNLTNNSVACIC  561 (606)
T ss_dssp             SCCSCEEGGGTTTCTTCCEEECTTSCCCCE-ESC-GGGSCTTCCEEECCSCCCCCSS
T ss_pred             CcCCCcCHHHccCCCcCCEEECCCCcCccc-CHh-HhhhcccCcEEEccCCCcccCC
Confidence            99995 478899999999999999999753 322 44555 3776666666676665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.92  E-value=4.9e-25  Score=204.81  Aligned_cols=135  Identities=18%  Similarity=0.243  Sum_probs=94.9

Q ss_pred             CCCCeEEcCCcccccchH--HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC-CcchhhhhCCCCCcEE
Q 047461          176 GNISWLFLRGIAIEELPS--SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL-QRLPECLGQLSSPITF  252 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L  252 (312)
                      ++|+.|++++|.++..+.  .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|+.|
T Consensus       396 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L  475 (570)
T 2z63_A          396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  475 (570)
T ss_dssp             TTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             CCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEE
Confidence            455566666665554432  4566777777777777776667777777888888888887765 4677778888888888


Q ss_pred             eccCCCCccc-chHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461          253 NLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       253 ~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      ++++|.++.+ |..+..+++|++|++++|++.+.. ...+.+++.++.++...+.|.+.|
T Consensus       476 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N~~~~~~  534 (570)
T 2z63_A          476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP-DGIFDRLTSLQKIWLHTNPWDCSC  534 (570)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             ECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC-HHHhhcccCCcEEEecCCcccCCC
Confidence            8888888854 677888888888888888887643 334456666666665555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=6.3e-24  Score=188.46  Aligned_cols=279  Identities=15%  Similarity=0.085  Sum_probs=199.8

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--Cc
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SA   79 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l   79 (312)
                      .+++.+.+..+...  +.....|..+++|++|++++|.+.      ...+..+.. ++|++|++++|.+..++...  .+
T Consensus        69 ~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l  140 (390)
T 3o6n_A           69 RQVELLNLNDLQIE--EIDTYAFAYAHTIQKLYMGFNAIR------YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT  140 (390)
T ss_dssp             CCCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccCcEEECCCCccc--ccChhhccCCCCcCEEECCCCCCC------cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCC
Confidence            45666666554433  334467899999999999998752      222344555 88999999999998888753  78


Q ss_pred             CCccEEeCCCCcccchh-hhcccCCCchh--cchhhccccc-ccCCC----------CCCcCCCcCCcEEEcCCCCcCcc
Q 047461           80 EKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLI-AKIPN----------PTLMPRLNKLVTLNLRGSKSLKS  145 (312)
Q Consensus        80 ~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~-~~~~~----------~~~~~~l~~L~~L~l~~~~~~~~  145 (312)
                      ++|++|++++|.+..++ ..+..+++|+.  ++.+...... ..++.          ...+...++|++|++++|. ...
T Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~-l~~  219 (390)
T 3o6n_A          141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INV  219 (390)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSC-CCE
T ss_pred             CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCe-eee
Confidence            99999999999988765 45788888884  4444322110 00000          0011222345555555555 233


Q ss_pred             ccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCC
Q 047461          146 LPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLK  223 (312)
Q Consensus       146 ~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~  223 (312)
                      +|.  ..+++|+.|++++|. +...+... .++|+.|++++|.++++ |..++.+++|++|++++|++.+ ++..++.++
T Consensus       220 ~~~--~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~  295 (390)
T 3o6n_A          220 VRG--PVNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP  295 (390)
T ss_dssp             EEC--CCCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred             ccc--cccccccEEECCCCC-CcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence            333  235789999999965 44445443 58999999999999976 6678899999999999998755 566667899


Q ss_pred             CCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCch
Q 047461          224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAV  297 (312)
Q Consensus       224 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  297 (312)
                      +|+.|++++|.+. .+|..+..+++|+.|++++|.++.++  +..+++|++|++++|++........+..++..
T Consensus       296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~  366 (390)
T 3o6n_A          296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP  366 (390)
T ss_dssp             TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred             CCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccchhHHHHHHHHHhh
Confidence            9999999998765 67778888999999999999999776  67889999999999999765555554454443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.92  E-value=1.1e-23  Score=182.63  Aligned_cols=239  Identities=15%  Similarity=0.155  Sum_probs=194.2

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccch-hhhcccCCCc
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRL-WDCVKHYSKL  105 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~-~~~~~~l~~L  105 (312)
                      .+++.++++++.+       ..++..+. +++++|++++|.+..++.. + .+++|++|++++|.++.+ |..+..+++|
T Consensus        31 c~l~~l~~~~~~l-------~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (330)
T 1xku_A           31 CHLRVVQCSDLGL-------EKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL  102 (330)
T ss_dssp             EETTEEECTTSCC-------CSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCCeEEEecCCCc-------cccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence            3788888887543       22333222 7899999999999888763 3 899999999999999977 6788999999


Q ss_pred             hh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCC--CCCccc--cCCCC
Q 047461          106 NQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEIS--SGNIS  179 (312)
Q Consensus       106 ~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~--~~p~~~--~~~L~  179 (312)
                      +.  ++.+.    +..++.  .+.  ++|++|++++|.+.+..+..+..+++|++|++++|....  ..+...  .++|+
T Consensus       103 ~~L~Ls~n~----l~~l~~--~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~  174 (330)
T 1xku_A          103 ERLYLSKNQ----LKELPE--KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  174 (330)
T ss_dssp             CEEECCSSC----CSBCCS--SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             CEEECCCCc----CCccCh--hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcC
Confidence            94  44444    344554  443  689999999999666555567889999999999965432  222221  57999


Q ss_pred             eEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCC
Q 047461          180 WLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI  259 (312)
Q Consensus       180 ~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l  259 (312)
                      .|++++|.++.+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       175 ~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          175 YIRIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             EEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC
T ss_pred             EEECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC
Confidence            99999999999886543  7999999999998888888899999999999999988877777889999999999999999


Q ss_pred             cccchHhhccCCCcEEEecCCcCCcc
Q 047461          260 ERIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       260 ~~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      +.+|..+..+++|++|++++|++.+.
T Consensus       253 ~~lp~~l~~l~~L~~L~l~~N~i~~~  278 (330)
T 1xku_A          253 VKVPGGLADHKYIQVVYLHNNNISAI  278 (330)
T ss_dssp             SSCCTTTTTCSSCCEEECCSSCCCCC
T ss_pred             ccCChhhccCCCcCEEECCCCcCCcc
Confidence            99999999999999999999999763

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.92  E-value=2.5e-23  Score=188.88  Aligned_cols=196  Identities=19%  Similarity=0.248  Sum_probs=101.8

Q ss_pred             CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461           78 SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT  157 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  157 (312)
                      .+++|++|++++|.+..++ .+..+++|+.|......  ....+   .++.+++|++|++++|.+. .++ .+..+++|+
T Consensus       175 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l~~~~---~~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~  246 (466)
T 1o6v_A          175 NLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ--ISDIT---PLGILTNLDELSLNGNQLK-DIG-TLASLTNLT  246 (466)
T ss_dssp             TCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC--CCCCG---GGGGCTTCCEEECCSSCCC-CCG-GGGGCTTCS
T ss_pred             cCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCc--ccccc---cccccCCCCEEECCCCCcc-cch-hhhcCCCCC
Confidence            4455556666655555442 24455555533222210  11111   2344555666666665532 222 244556666


Q ss_pred             EEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC
Q 047461          158 KLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL  236 (312)
Q Consensus       158 ~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~  236 (312)
                      +|++++|... ..+... .++|+.|++++|.++.++. ++.+++|++|++++|++.+..+  ++.+++|+.|++++|.+.
T Consensus       247 ~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          247 DLDLANNQIS-NLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             EEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCS
T ss_pred             EEECCCCccc-cchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCC
Confidence            6666664322 222222 4556666666666665554 5555666666666665544322  455666666666666555


Q ss_pred             CcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccc
Q 047461          237 QRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRI  288 (312)
Q Consensus       237 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  288 (312)
                      +..|  +..+++|+.|++++|.++.+ +.+..+++|+.|++++|++.+..++
T Consensus       323 ~~~~--~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~~  371 (466)
T 1o6v_A          323 DISP--VSSLTKLQRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTPL  371 (466)
T ss_dssp             CCGG--GGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGGG
T ss_pred             Cchh--hccCccCCEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccchh
Confidence            4443  44566666666666666654 2355566666666666666555543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.92  E-value=3.2e-24  Score=198.55  Aligned_cols=270  Identities=17%  Similarity=0.146  Sum_probs=179.0

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCc-c-CcC
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN-L-SAE   80 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~-~l~   80 (312)
                      .++.+++..+...  +.....|.++++|++|++++|.+.      ...+..+.. ++|++|++++|.+..++.. + .++
T Consensus        27 ~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~   98 (549)
T 2z81_A           27 AMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS   98 (549)
T ss_dssp             TCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred             CccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcC------ccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence            4566666655443  333467889999999999998752      222344555 8899999999988887764 3 788


Q ss_pred             CccEEeCCCCcccch--hhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccC------
Q 047461           81 KLMLLEVPDSDIKRL--WDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFN------  152 (312)
Q Consensus        81 ~L~~L~l~~~~~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~------  152 (312)
                      +|++|++++|.+..+  +..+..+++|+.|....... ...++. ..++.+++|++|++++|.+.+..|..+..      
T Consensus        99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~-~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  176 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET-FSEIRR-IDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH  176 (549)
T ss_dssp             TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSS-CCEECT-TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred             CCcEEECCCCcccccchhhhhhccCCccEEECCCCcc-ccccCH-hhhhcccccCeeeccCCcccccChhhhhccccCce
Confidence            999999999988743  45677888888554433211 222221 15777888888888888766656655544      


Q ss_pred             ------------------CCcCcEEeccCCCCCCC----CCcc-------------------------------------
Q 047461          153 ------------------LEFLTKLDLSGCSKLKR----LPEI-------------------------------------  173 (312)
Q Consensus       153 ------------------~~~L~~L~l~~~~~l~~----~p~~-------------------------------------  173 (312)
                                        +++|++|++++|...+.    .+..                                     
T Consensus       177 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l  256 (549)
T 2z81_A          177 LTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV  256 (549)
T ss_dssp             EEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred             EecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence                              45556666655432220    0000                                     


Q ss_pred             ---------------------------------------------------ccCCCCeEEcCCcccccchHHH-HhcCCC
Q 047461          174 ---------------------------------------------------SSGNISWLFLRGIAIEELPSSI-ERLLRL  201 (312)
Q Consensus       174 ---------------------------------------------------~~~~L~~L~l~~~~l~~l~~~~-~~l~~L  201 (312)
                                                                         ...+++.+++++|.++.+|..+ +.+++|
T Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L  336 (549)
T 2z81_A          257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL  336 (549)
T ss_dssp             EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTC
T ss_pred             ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccc
Confidence                                                               0124556666666666677665 468888


Q ss_pred             CEEecCCCCCCCcCch---hhhcCCCCCeEeccCCCCCCcc--hhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEE
Q 047461          202 GYLDLSDCKRLKSLPS---SLYRLKSLGVLSLCGCSNLQRL--PECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLL  276 (312)
Q Consensus       202 ~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~  276 (312)
                      ++|++++|++.+.+|.   .++.+++|++|++++|.+.+..  +..+..+++|+.|++++|+++.+|..+..+++|++|+
T Consensus       337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~  416 (549)
T 2z81_A          337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLN  416 (549)
T ss_dssp             CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEE
T ss_pred             cEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEE
Confidence            8888888887765543   2567778888888887765432  2457778888888888888887777777777777777


Q ss_pred             ecCCcCC
Q 047461          277 LSYGIVE  283 (312)
Q Consensus       277 l~~n~~~  283 (312)
                      +++|.+.
T Consensus       417 Ls~N~l~  423 (549)
T 2z81_A          417 LSSTGIR  423 (549)
T ss_dssp             CTTSCCS
T ss_pred             CCCCCcc
Confidence            7777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=1.1e-23  Score=182.94  Aligned_cols=216  Identities=17%  Similarity=0.212  Sum_probs=103.5

Q ss_pred             CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccch-hhhcccCCCchh--cchhhcccccccCCCCCCcCCCcCC
Q 047461           58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRL-WDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKL  132 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L  132 (312)
                      +++++|++++|.+..++. .+ .+++|++|++++|.++.+ +..+..+++|+.  ++.+.    +..++.  .+.  ++|
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----l~~l~~--~~~--~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH----LVEIPP--NLP--SSL  125 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC----CCSCCS--SCC--TTC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc----CCccCc--ccc--ccC
Confidence            455666666655555433 22 555666666666655544 344555555552  33222    223332  222  455


Q ss_pred             cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCC--CCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCC
Q 047461          133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC  209 (312)
Q Consensus       133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~--~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  209 (312)
                      ++|++++|.+....+..+..+++|++|++++|....  ..+... ..+|+.|++++|.++.+|..+.  ++|++|++++|
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n  203 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP--ETLNELHLDHN  203 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSS
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcccc--CCCCEEECCCC
Confidence            555555555332222234455555555555543210  111111 1145555555555555443322  34555555555


Q ss_pred             CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461          210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                      .+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|++|++++|++.
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence            54444444445555555555555544444444445555555555555555555554555555555555555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.91  E-value=7.7e-24  Score=205.28  Aligned_cols=271  Identities=17%  Similarity=0.134  Sum_probs=163.3

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-CCcc-Cc
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-PSNL-SA   79 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-~~~~-~l   79 (312)
                      ..++.++|..+....  .....|.++++|++|++++|..     .....+..+.. ++|++|++++|.+..+ |..+ .+
T Consensus        24 ~~l~~LdLs~N~i~~--i~~~~~~~l~~L~~LdLs~n~~-----~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l   96 (844)
T 3j0a_A           24 NTTERLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYT-----PLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL   96 (844)
T ss_dssp             TTCCEEEEESCCCCE--ECSSSCSSCCSCSEEEECTTCC-----CCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred             CCcCEEECCCCcCCc--cChhHCcccccCeEEeCCCCCC-----ccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence            456667766655432  3346678888888888888642     11122445555 7888888888887765 3344 77


Q ss_pred             CCccEEeCCCCcccc-hhhh--cccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCC-
Q 047461           80 EKLMLLEVPDSDIKR-LWDC--VKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNL-  153 (312)
Q Consensus        80 ~~L~~L~l~~~~~~~-~~~~--~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~-  153 (312)
                      ++|++|++++|.+.. .+..  +..+++|+.  ++.+.    +..+..+..++.+++|++|++++|.+.+..+..+..+ 
T Consensus        97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~----l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~  172 (844)
T 3j0a_A           97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ----IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ  172 (844)
T ss_dssp             SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC----CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred             cccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc----ccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence            888888888887764 3433  677788874  44443    2222221256777888888888776544434333222 


Q ss_pred             -Cc------------------------------CcEEeccCCCCCCCCCcc-----------------------------
Q 047461          154 -EF------------------------------LTKLDLSGCSKLKRLPEI-----------------------------  173 (312)
Q Consensus       154 -~~------------------------------L~~L~l~~~~~l~~~p~~-----------------------------  173 (312)
                       ++                              |+.|++++|......+..                             
T Consensus       173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l  252 (844)
T 3j0a_A          173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI  252 (844)
T ss_dssp             HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred             CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence             23                              555555554221111100                             


Q ss_pred             -----------ccCCCCeEEcCCcccccch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchh
Q 047461          174 -----------SSGNISWLFLRGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE  241 (312)
Q Consensus       174 -----------~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~  241 (312)
                                 ...+++.|++++|.++.++ ..++.+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..|.
T Consensus       253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  332 (844)
T 3j0a_A          253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSS  332 (844)
T ss_dssp             TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSC
T ss_pred             CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHH
Confidence                       0134666666666665442 3455666677777777666666666666677777777777666655566


Q ss_pred             hhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCCc
Q 047461          242 CLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       242 ~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      .+..+++|+.|++++|.++.++ ..+..+++|++|++++|.+.+
T Consensus       333 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             SCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             HhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            6667777777777777766444 345667777777777776654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=7.1e-24  Score=181.96  Aligned_cols=221  Identities=19%  Similarity=0.199  Sum_probs=116.0

Q ss_pred             CCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccch---hhhcccCCCchh--cchhhcccccccCCCCCCcCCCc
Q 047461           58 AEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRL---WDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLN  130 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~---~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~  130 (312)
                      +++++|++++|.+..++...  .+++|++|++++|.+...   +..+..+++|+.  ++.+.    +..++.  .+..++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~----i~~l~~--~~~~l~  101 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG----VITMSS--NFLGLE  101 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS----EEEEEE--EEETCT
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc----cccChh--hcCCCC
Confidence            34455555555544444321  444555555555544422   233334444442  22222    122222  344455


Q ss_pred             CCcEEEcCCCCcCcccc-ccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCccccc--chHHHHhcCCCCEEe
Q 047461          131 KLVTLNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE--LPSSIERLLRLGYLD  205 (312)
Q Consensus       131 ~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~  205 (312)
                      +|++|++++|.+.+..+ ..+..+++|++|++++|......+...  .++|++|++++|.+++  +|..++.+++|++|+
T Consensus       102 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          102 QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            56666666555322222 234455566666665543222222211  2456666666666553  455556666667777


Q ss_pred             cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccC-CCcEEEecCCcCC
Q 047461          206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLF-VSGYLLLSYGIVE  283 (312)
Q Consensus       206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~-~L~~L~l~~n~~~  283 (312)
                      +++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++ ..|..+..++ +|++|++++|++.
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~  261 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  261 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence            7666666555666666666777777666655554555666666777777777666 3444555553 6677777776665


Q ss_pred             c
Q 047461          284 D  284 (312)
Q Consensus       284 ~  284 (312)
                      .
T Consensus       262 ~  262 (306)
T 2z66_A          262 C  262 (306)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.91  E-value=3.8e-23  Score=179.48  Aligned_cols=258  Identities=17%  Similarity=0.110  Sum_probs=196.8

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchhhhcccCCCc
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLWDCVKHYSKL  105 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L  105 (312)
                      +++++|++++|.+.      ...+..+.. ++|++|++++|.+..++. .+ .+++|++|++++|.+..+|..+.  ++|
T Consensus        54 ~~l~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQNNDIS------ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL  125 (332)
T ss_dssp             TTCCEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred             CCCeEEECCCCcCC------ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence            68999999998752      222344555 899999999999887743 34 78999999999999998876554  778


Q ss_pred             hhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCc--cccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEc
Q 047461          106 NQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLK--SLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL  183 (312)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l  183 (312)
                      +.|......  +..++. ..++.+++|++|++++|.+..  ..+..+..+ +|++|++++|. +..+|....++|+.|++
T Consensus       126 ~~L~l~~n~--i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l  200 (332)
T 2ft3_A          126 VELRIHDNR--IRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHL  200 (332)
T ss_dssp             CEEECCSSC--CCCCCS-GGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBC
T ss_pred             CEEECCCCc--cCccCH-hHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEEC
Confidence            844433211  333332 247889999999999998642  455666666 89999999954 55566655579999999


Q ss_pred             CCcccccch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc
Q 047461          184 RGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI  262 (312)
Q Consensus       184 ~~~~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  262 (312)
                      ++|.++.++ ..+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+
T Consensus       201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~  279 (332)
T 2ft3_A          201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKV  279 (332)
T ss_dssp             CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCcc
Confidence            999999876 56888999999999999988877778999999999999998765 7888899999999999999999976


Q ss_pred             ch-Hhhc------cCCCcEEEecCCcCCc-cccccccCCCCchhHH
Q 047461          263 PE-SIIQ------LFVSGYLLLSYGIVED-TLRIQHTNHTPAVRWQ  300 (312)
Q Consensus       263 ~~-~l~~------~~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~  300 (312)
                      +. .+..      .+.|+.|++++|++.. ......+..++.++.+
T Consensus       280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l  325 (332)
T 2ft3_A          280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI  325 (332)
T ss_dssp             CTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred             ChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence            64 3332      4678999999999862 1222334455555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.91  E-value=2.1e-23  Score=197.84  Aligned_cols=186  Identities=19%  Similarity=0.126  Sum_probs=102.6

Q ss_pred             CcCCCcCCcEEEcCCCCcCcccc-ccccCCCcCcEEeccCCCCC--------------------------CCCCccc--c
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKL--------------------------KRLPEIS--S  175 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l--------------------------~~~p~~~--~  175 (312)
                      .++.+++|++|++++|.+.+.+| ..+.++++|++|++++|...                          +..|...  .
T Consensus       400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l  479 (680)
T 1ziw_A          400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL  479 (680)
T ss_dssp             TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred             hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence            45555666666666665444443 23444555555555554311                          1122211  3


Q ss_pred             CCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCc--------hhhhcCCCCCeEeccCCCCCCcchhhhhCC
Q 047461          176 GNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLP--------SSLYRLKSLGVLSLCGCSNLQRLPECLGQL  246 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~--------~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l  246 (312)
                      ++|+.|++++|.++.++. .++.+++|++|++++|++.+..+        ..++.+++|+.|++++|.+..-.+..+.++
T Consensus       480 ~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l  559 (680)
T 1ziw_A          480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL  559 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence            456677777776666554 35566667777777666543211        124566667777776665543223346667


Q ss_pred             CCCcEEeccCCCCcccchH-hhccCCCcEEEecCCcCCccccccccC-CCCchhHHHhhhcceeeec
Q 047461          247 SSPITFNLAKTNIERIPES-IIQLFVSGYLLLSYGIVEDTLRIQHTN-HTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       247 ~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  311 (312)
                      ++|+.|++++|.++.+|.. +..+++|+.|++++|.+.+..+. .+. .++.++.++...++|.|.|
T Consensus       560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK-VFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH-HHHHHHTTCSEEECTTCCCCBCC
T ss_pred             cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh-HhcccccccCEEEccCCCcccCC
Confidence            7777777777777755543 45667777777777766553322 111 2344444455566666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=4.1e-23  Score=192.95  Aligned_cols=261  Identities=15%  Similarity=0.080  Sum_probs=193.9

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc--CcC
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL--SAE   80 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~--~l~   80 (312)
                      +++.+.+..+..  .+.....|..+++|++|++++|.+.+      ..+..+.. ++|++|++++|.+..+|...  .++
T Consensus        76 ~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~  147 (597)
T 3oja_B           76 QVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRY------LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP  147 (597)
T ss_dssp             CCSEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             CCcEEECCCCCC--CCCChHHhcCCCCCCEEECCCCcCCC------CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCC
Confidence            455555554443  33444688999999999999987522      22334455 89999999999998888753  789


Q ss_pred             CccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcC-------------------CcEEEcC
Q 047461           81 KLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNK-------------------LVTLNLR  138 (312)
Q Consensus        81 ~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~-------------------L~~L~l~  138 (312)
                      +|++|++++|.+..++ ..+..+++|+.  ++.+....    +    .++.+++                   |++|+++
T Consensus       148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~----~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls  219 (597)
T 3oja_B          148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH----V----DLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS  219 (597)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB----C----CGGGCTTCSEEECCSSCCSEEECCTTCSEEECC
T ss_pred             CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC----c----ChhhhhhhhhhhcccCccccccCCchhheeecc
Confidence            9999999999998765 46788899984  44443221    1    1233344                   5555555


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCc
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLP  216 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~  216 (312)
                      +|. ...++..  ..++|+.|++++|...+ .+... .++|+.|++++|.++.+ |..++.+++|+.|++++|.+.+ +|
T Consensus       220 ~n~-l~~~~~~--~~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~  294 (597)
T 3oja_B          220 HNS-INVVRGP--VNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LN  294 (597)
T ss_dssp             SSC-CCEEECS--CCSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EE
T ss_pred             CCc-ccccccc--cCCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CC
Confidence            554 2233322  24689999999965443 44333 68999999999999976 6778899999999999998766 56


Q ss_pred             hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccc
Q 047461          217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRI  288 (312)
Q Consensus       217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  288 (312)
                      ..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.++  +..+++|++|++++|++......
T Consensus       295 ~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~  363 (597)
T 3oja_B          295 LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLR  363 (597)
T ss_dssp             CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHH
T ss_pred             cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHH
Confidence            66778999999999998776 68888899999999999999999775  57789999999999998754433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=3.4e-23  Score=187.26  Aligned_cols=220  Identities=21%  Similarity=0.247  Sum_probs=181.5

Q ss_pred             CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcCC
Q 047461           58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKL  132 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L  132 (312)
                      +++++|++++|.+..++. .+ .+++|++|++++|.+..++ ..+..+++|+.  |+.+.    +..++. ..++.+++|
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~----l~~~~~-~~~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW----LTVIPS-GAFEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CSBCCT-TTSSSCTTC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc----CCccCh-hhhcccCCC
Confidence            689999999998887754 33 8899999999999988765 56788899984  44444    333432 257889999


Q ss_pred             cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCC
Q 047461          133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC  209 (312)
Q Consensus       133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  209 (312)
                      ++|++++|.+....+..+..+++|++|++++|+.++.++...   .++|+.|++++|.++++|. +..+++|++|++++|
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N  228 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGN  228 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTS
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCC
Confidence            999999998554444567889999999999988777766532   5789999999999998864 677889999999999


Q ss_pred             CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCC
Q 047461          210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~  283 (312)
                      .+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++.
T Consensus       229 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             cCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence            9988888899999999999999999888888889999999999999999997664 4678999999999999863

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=3.3e-23  Score=186.68  Aligned_cols=220  Identities=22%  Similarity=0.276  Sum_probs=181.6

Q ss_pred             CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcCC
Q 047461           58 AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKL  132 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L  132 (312)
                      .+++.|++++|.+..++.. + .+++|++|++++|.+..++ ..+..+++|+.  ++.+.    +..++. ..+..+++|
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~----l~~~~~-~~~~~l~~L  138 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR----LTTIPN-GAFVYLSKL  138 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC----CSSCCT-TTSCSCSSC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc----CCeeCH-hHhhccccC
Confidence            6889999999998877643 3 8899999999999998766 56788999994  44444    333332 257889999


Q ss_pred             cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCC
Q 047461          133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC  209 (312)
Q Consensus       133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  209 (312)
                      ++|++++|.+....+..+..+++|++|++++|+.+..++...   .++|+.|++++|.++.+|. +..+++|++|++++|
T Consensus       139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N  217 (440)
T 3zyj_A          139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN  217 (440)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS
T ss_pred             ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCC
Confidence            999999998555445577889999999999988777666432   5789999999999998874 678889999999999


Q ss_pred             CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCC
Q 047461          210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~  283 (312)
                      .+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|+++.+|. .+..+++|+.|++++|++.
T Consensus       218 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            9888888889999999999999999888888889999999999999999997664 5678999999999999873

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.90  E-value=5.1e-24  Score=197.20  Aligned_cols=156  Identities=15%  Similarity=0.155  Sum_probs=97.6

Q ss_pred             CCCcCcEEeccCCCCCCCCCcc-----ccCCCCeEEcCCcccccchH---HHHhcCCCCEEecCCCCCCCcCchhhhcCC
Q 047461          152 NLEFLTKLDLSGCSKLKRLPEI-----SSGNISWLFLRGIAIEELPS---SIERLLRLGYLDLSDCKRLKSLPSSLYRLK  223 (312)
Q Consensus       152 ~~~~L~~L~l~~~~~l~~~p~~-----~~~~L~~L~l~~~~l~~l~~---~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~  223 (312)
                      .+++|++|++++|...+..|..     ..++|+.|++++|.++.++.   .++.+++|++|++++|++. .+|..++.++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~  410 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPE  410 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccc
Confidence            3566666666665433322211     13567777777777776552   3566777777777777654 4565566666


Q ss_pred             CCCeEeccCCCCCCcchhh------------------hhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461          224 SLGVLSLCGCSNLQRLPEC------------------LGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       224 ~L~~L~l~~~~~~~~~p~~------------------~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      +|++|++++|.+.+ +|..                  ...+++|+.|++++|+++.+|. ...+++|++|++++|++.+.
T Consensus       411 ~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          411 KMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             TCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred             cccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCc
Confidence            66666666665431 1111                  1257788888888888887776 45688889999999888764


Q ss_pred             ccccccCCCCchhHHHhhhcceeeec
Q 047461          286 LRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      .+ ..+..++.++.++...+.|.+.|
T Consensus       489 ~~-~~~~~l~~L~~L~l~~N~~~~~~  513 (549)
T 2z81_A          489 PD-GIFDRLTSLQKIWLHTNPWDCSC  513 (549)
T ss_dssp             CT-TGGGGCTTCCEEECCSSCBCCCH
T ss_pred             CH-HHHhcCcccCEEEecCCCccCCC
Confidence            33 33445666666665566665554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.90  E-value=2.8e-23  Score=193.00  Aligned_cols=109  Identities=21%  Similarity=0.162  Sum_probs=64.4

Q ss_pred             CCCCeEEcCCcccccc---hHHHHhcCCCCEEecCCCCCCCc-----------------------Cc-hhhhcCCCCCeE
Q 047461          176 GNISWLFLRGIAIEEL---PSSIERLLRLGYLDLSDCKRLKS-----------------------LP-SSLYRLKSLGVL  228 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~n~~~~~-----------------------~~-~~l~~l~~L~~L  228 (312)
                      ++|+.|++++|.++..   +..+..+++|++|++++|.+.+.                       .+ ..+..+++|++|
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            4566666666666543   45555666666666666543322                       22 234455555666


Q ss_pred             eccCCCCCCcchhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCCcCCc
Q 047461          229 SLCGCSNLQRLPECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       229 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      ++++|.+.+..|..+.++++|+.|++++|.++  .+|..+..+++|++|++++|++.+
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~  484 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ  484 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc
Confidence            66555555555556666666666666666665  456666666777777777776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.6e-23  Score=190.33  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=134.0

Q ss_pred             CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCC--CCCccc--cCCCCeEEcCCccccc-chHH-HHhcCC
Q 047461          127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK--RLPEIS--SGNISWLFLRGIAIEE-LPSS-IERLLR  200 (312)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~--~~p~~~--~~~L~~L~l~~~~l~~-l~~~-~~~l~~  200 (312)
                      +.+++|++|++++|.+.+..|..+..+++|++|++++|...+  .+|...  .++|+.|++++|.++. +|.. +..+++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence            577899999999999877788889999999999999965432  222211  5799999999999997 8864 677899


Q ss_pred             CCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hhccCCCcEEEecC
Q 047461          201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-IIQLFVSGYLLLSY  279 (312)
Q Consensus       201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~  279 (312)
                      |++|++++|++.+..+..+.  ++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+|.. +..+++|++|++++
T Consensus       401 L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~  477 (520)
T 2z7x_B          401 LLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHT  477 (520)
T ss_dssp             CCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcC
Confidence            99999999998887776543  68999999998876 8888888999999999999999988876 88999999999999


Q ss_pred             CcCCcccc
Q 047461          280 GIVEDTLR  287 (312)
Q Consensus       280 n~~~~~~~  287 (312)
                      |++...-+
T Consensus       478 N~~~c~c~  485 (520)
T 2z7x_B          478 NPWDCSCP  485 (520)
T ss_dssp             SCBCCCHH
T ss_pred             CCCcccCC
Confidence            99876443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.90  E-value=9.3e-23  Score=189.32  Aligned_cols=157  Identities=18%  Similarity=0.161  Sum_probs=133.0

Q ss_pred             CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc-----ccCCCCeEEcCCccccc-chHH-HHhcC
Q 047461          127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI-----SSGNISWLFLRGIAIEE-LPSS-IERLL  199 (312)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~-----~~~~L~~L~l~~~~l~~-l~~~-~~~l~  199 (312)
                      +.+++|++|++++|.+.+..|..+..+++|++|++++|. +..++..     ..++|+.|++++|.++. +|.. +..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            677899999999999888788889999999999999964 5544421     15789999999999997 7754 66789


Q ss_pred             CCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hhccCCCcEEEec
Q 047461          200 RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-IIQLFVSGYLLLS  278 (312)
Q Consensus       200 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~  278 (312)
                      +|++|++++|++.+..+..+.  ++|+.|++++|.+. .+|..+..+++|+.|++++|+++.+|.. +..+++|+.|+++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~  505 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH  505 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECC
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEec
Confidence            999999999998877666443  68999999998765 7888888999999999999999998887 8899999999999


Q ss_pred             CCcCCcccc
Q 047461          279 YGIVEDTLR  287 (312)
Q Consensus       279 ~n~~~~~~~  287 (312)
                      +|++...-+
T Consensus       506 ~N~~~c~c~  514 (562)
T 3a79_B          506 DNPWDCTCP  514 (562)
T ss_dssp             SCCBCCCHH
T ss_pred             CCCcCCCcc
Confidence            999876433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=7.5e-23  Score=179.11  Aligned_cols=248  Identities=15%  Similarity=0.162  Sum_probs=190.3

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchhhh-cccCCC
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLWDC-VKHYSK  104 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~~-~~~l~~  104 (312)
                      ++|++|++++|.+.      ......+.. ++|++|++++|.+..++.. + .+++|++|++++|.++.++.. +..+++
T Consensus        52 ~~L~~L~l~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  125 (353)
T 2z80_A           52 EAVKSLDLSNNRIT------YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS  125 (353)
T ss_dssp             TTCCEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred             ccCcEEECCCCcCc------ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence            48999999998752      112224555 8999999999998877543 3 889999999999999988765 788999


Q ss_pred             chhc--chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccc-cccccCCCcCcEEeccCCCCCCCCCccc--cCCCC
Q 047461          105 LNQI--IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNIS  179 (312)
Q Consensus       105 L~~l--~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~  179 (312)
                      |+.|  +.+.    +..++....++.+++|++|++++|...+.+ +..+..+++|++|++++|...+..|...  .++|+
T Consensus       126 L~~L~L~~n~----l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  201 (353)
T 2z80_A          126 LTFLNLLGNP----YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS  201 (353)
T ss_dssp             CSEEECTTCC----CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred             CCEEECCCCC----CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCC
Confidence            9944  4444    333332126788999999999998545554 5578889999999999976443333322  46899


Q ss_pred             eEEcCCcccccchHHH-HhcCCCCEEecCCCCCCCcCchhh---hcCCCCCeEeccCCCCCC----cchhhhhCCCCCcE
Q 047461          180 WLFLRGIAIEELPSSI-ERLLRLGYLDLSDCKRLKSLPSSL---YRLKSLGVLSLCGCSNLQ----RLPECLGQLSSPIT  251 (312)
Q Consensus       180 ~L~l~~~~l~~l~~~~-~~l~~L~~L~l~~n~~~~~~~~~l---~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~  251 (312)
                      .|++++|.++.+|..+ ..+++|++|++++|.+.+..+..+   ...+.++.++++++.+.+    .+|..+..+++|+.
T Consensus       202 ~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~  281 (353)
T 2z80_A          202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLE  281 (353)
T ss_dssp             EEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCE
T ss_pred             eecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCE
Confidence            9999999999888654 468899999999998876543322   235678889998887765    47888999999999


Q ss_pred             EeccCCCCcccchHh-hccCCCcEEEecCCcCCccc
Q 047461          252 FNLAKTNIERIPESI-IQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       252 L~l~~n~l~~~~~~l-~~~~~L~~L~l~~n~~~~~~  286 (312)
                      |++++|.++.+|..+ ..+++|++|++++|++.+..
T Consensus       282 L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          282 LEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             EECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            999999999888774 89999999999999987644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=2.1e-22  Score=182.00  Aligned_cols=233  Identities=18%  Similarity=0.114  Sum_probs=133.9

Q ss_pred             hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccC
Q 047461           24 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHY  102 (312)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l  102 (312)
                      .+..+++|++|++++|.+.+.         .+.. ++|++|++++|.+..++ ...+++|++|++++|.++.++  +..+
T Consensus        59 ~l~~l~~L~~L~Ls~n~l~~~---------~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l~~l~--~~~l  126 (457)
T 3bz5_A           59 GIEKLTGLTKLICTSNNITTL---------DLSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLD--VSQN  126 (457)
T ss_dssp             TGGGCTTCSEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCCSCCC--CTTC
T ss_pred             hhcccCCCCEEEccCCcCCeE---------ccccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcCCeec--CCCC
Confidence            466667777777776654221         1333 66777777777666654 336667777777777666653  5566


Q ss_pred             CCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEE
Q 047461          103 SKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF  182 (312)
Q Consensus       103 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~  182 (312)
                      ++|+.|......  +..+    .++.+++|++|++++|...+.++  +..+++|++|++++|. +..+|....++|+.|+
T Consensus       127 ~~L~~L~l~~N~--l~~l----~l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~  197 (457)
T 3bz5_A          127 PLLTYLNCARNT--LTEI----DVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLN  197 (457)
T ss_dssp             TTCCEEECTTSC--CSCC----CCTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEE
T ss_pred             CcCCEEECCCCc--ccee----ccccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCc-cceeccccCCCCCEEE
Confidence            666633322210  1222    24556677777777765555542  5566777777777743 4444422245677777


Q ss_pred             cCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc--
Q 047461          183 LRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE--  260 (312)
Q Consensus       183 l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~--  260 (312)
                      +++|.++.++  ++.+++|++|++++|++.+ +|  ++.+++|+.|++++|.+.+..+   ..+++|+.|+++.|.++  
T Consensus       198 l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L  269 (457)
T 3bz5_A          198 CDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEI  269 (457)
T ss_dssp             CCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCC
T ss_pred             CcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEE
Confidence            7777776653  5566677777777776655 44  5666777777777766555332   23344444333333322  


Q ss_pred             ---------ccchHhhccCCCcEEEecCCcCCcccc
Q 047461          261 ---------RIPESIIQLFVSGYLLLSYGIVEDTLR  287 (312)
Q Consensus       261 ---------~~~~~l~~~~~L~~L~l~~n~~~~~~~  287 (312)
                               .+|  ++.+++|+.|++++|...+..+
T Consensus       270 ~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~  303 (457)
T 3bz5_A          270 DLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD  303 (457)
T ss_dssp             CCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred             ECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence                     222  2456777777777776655444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.90  E-value=1.3e-21  Score=185.64  Aligned_cols=224  Identities=17%  Similarity=0.103  Sum_probs=169.3

Q ss_pred             CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccc-hh-hhcccCCCchhcchhhcccccccCCCCCCcCCCcCCc
Q 047461           58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKR-LW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLV  133 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~-~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~  133 (312)
                      ++|++|++++|.+..++. .+ .+++|+.|++++|.+.. ++ ..+..+++|+.+...... +....+.  .+..+++|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~~~~~L~  457 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRN--SFALVPSLQ  457 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTT--TTTTCTTCC
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChh--hhhcCcccc
Confidence            467777777777665543 23 67888888888888763 44 456778888844333221 1222233  677888999


Q ss_pred             EEEcCCCCcC--ccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH---------HHHhcC
Q 047461          134 TLNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS---------SIERLL  199 (312)
Q Consensus       134 ~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~---------~~~~l~  199 (312)
                      +|++++|.+.  +..|..+..+++|++|++++|. +..++...   .++|+.|++++|.++.++.         .++.++
T Consensus       458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~  536 (680)
T 1ziw_A          458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLS  536 (680)
T ss_dssp             EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCT
T ss_pred             cchhccccccccccCCcccccCCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCC
Confidence            9999998754  5678888899999999999965 44455432   5789999999999987632         267889


Q ss_pred             CCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hh-ccCCCcEEEe
Q 047461          200 RLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-II-QLFVSGYLLL  277 (312)
Q Consensus       200 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~-~~~~L~~L~l  277 (312)
                      +|++|++++|++....+..++.+++|+.|++++|.+.+-.+..+..+++|+.|++++|.++.++.. +. .+++|+.+++
T Consensus       537 ~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l  616 (680)
T 1ziw_A          537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM  616 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEEC
T ss_pred             CCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEc
Confidence            999999999987754445688999999999999988766666678999999999999999976654 55 7899999999


Q ss_pred             cCCcCCcc
Q 047461          278 SYGIVEDT  285 (312)
Q Consensus       278 ~~n~~~~~  285 (312)
                      ++|++...
T Consensus       617 ~~N~~~c~  624 (680)
T 1ziw_A          617 RFNPFDCT  624 (680)
T ss_dssp             TTCCCCBC
T ss_pred             cCCCcccC
Confidence            99988643

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.90  E-value=6.4e-22  Score=178.80  Aligned_cols=235  Identities=17%  Similarity=0.169  Sum_probs=134.4

Q ss_pred             hcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCC
Q 047461           25 FTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYS  103 (312)
Q Consensus        25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~  103 (312)
                      ++.+++|++|++++|.+.+.         .+.. ++|++|++++|.+..++ ...+++|++|++++|.++.++  +..++
T Consensus        81 ~~~l~~L~~L~Ls~N~l~~~---------~~~~l~~L~~L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~  148 (457)
T 3bz5_A           81 LSQNTNLTYLACDSNKLTNL---------DVTPLTKLTYLNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNT  148 (457)
T ss_dssp             CTTCTTCSEEECCSSCCSCC---------CCTTCTTCCEEECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCT
T ss_pred             cccCCCCCEEECcCCCCcee---------ecCCCCcCCEEECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCC
Confidence            56667777777777654221         1333 66777777777666654 336667777777777666553  55566


Q ss_pred             CchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEc
Q 047461          104 KLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFL  183 (312)
Q Consensus       104 ~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l  183 (312)
                      +|+.+....... ...+    .++.+++|++|++++|.+.+ +|  +..+++|+.|++++|. +..++....++|+.|++
T Consensus       149 ~L~~L~l~~n~~-~~~~----~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~L  219 (457)
T 3bz5_A          149 QLTELDCHLNKK-ITKL----DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDC  219 (457)
T ss_dssp             TCCEEECTTCSC-CCCC----CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEEC
T ss_pred             cCCEEECCCCCc-cccc----ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCc-CCeeccccCCCCCEEEC
Confidence            666443332211 1111    24556677777777766333 44  5566777777777643 33333222456777777


Q ss_pred             CCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCC-------CCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          184 RGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLK-------SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       184 ~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~-------~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      ++|.++++|  ++.+++|++|++++|++.+..+..+.+++       +|+.+++++|...+.+|  +..+++|+.|++++
T Consensus       220 s~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~  295 (457)
T 3bz5_A          220 SSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTH  295 (457)
T ss_dssp             CSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTT
T ss_pred             cCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCC
Confidence            777777665  55666777777777766554333333332       34555555555555555  34566777777777


Q ss_pred             CCCc-ccch--------HhhccCCCcEEEecCCcCCc
Q 047461          257 TNIE-RIPE--------SIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       257 n~l~-~~~~--------~l~~~~~L~~L~l~~n~~~~  284 (312)
                      |... .+|.        .+..+++|++|++++|.+.+
T Consensus       296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~  332 (457)
T 3bz5_A          296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE  332 (457)
T ss_dssp             CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred             CcccceeccCCCcceEechhhcccCCEEECCCCcccc
Confidence            6532 2221        14455667777777777666

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=3.7e-22  Score=169.53  Aligned_cols=199  Identities=22%  Similarity=0.295  Sum_probs=100.9

Q ss_pred             CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccch-hhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461           58 AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRL-WDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT  134 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~-~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  134 (312)
                      ++|++|+++++.+..++.. + .+++|++|++++|.++.+ +..+..++                           +|++
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~---------------------------~L~~   84 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA---------------------------LLEQ   84 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT---------------------------TCCE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCcc---------------------------CCCE
Confidence            5677777777776666542 2 666777777777766644 23344444                           4555


Q ss_pred             EEcCCCCcCccc-cccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCC
Q 047461          135 LNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCK  210 (312)
Q Consensus       135 L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~  210 (312)
                      |++++|...+.+ +..+..+++|++|++++|......|...  .++|++|++++|.++.++.. ++.+++|++|++++|+
T Consensus        85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  164 (285)
T 1ozn_A           85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR  164 (285)
T ss_dssp             EECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc
Confidence            555544322222 3334444455555555433222111111  23455555555555544432 4445555555555555


Q ss_pred             CCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCC
Q 047461          211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~  283 (312)
                      +.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++.
T Consensus       165 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            444333345555555555555555544445555555555555555555554442 3455555555555555543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.89  E-value=1e-22  Score=174.73  Aligned_cols=223  Identities=17%  Similarity=0.185  Sum_probs=179.1

Q ss_pred             CCCcEEEeeccccccccccccccCCC-CCC-CCccEEeeCCCCCCCCC---C-ccCcCCccEEeCCCCcccchhhhcccC
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQD-PGF-AEVKYLHWHGYPLKSLP---S-NLSAEKLMLLEVPDSDIKRLWDCVKHY  102 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~---~-~~~l~~L~~L~l~~~~~~~~~~~~~~l  102 (312)
                      ++|++|+++++.+.       ..+.. +.. ++|++|++++|.+..+.   . ...+++|++|++++|.+..++..+..+
T Consensus        28 ~~l~~L~L~~n~l~-------~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l  100 (306)
T 2z66_A           28 SSATRLELESNKLQ-------SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL  100 (306)
T ss_dssp             TTCCEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred             CCCCEEECCCCccC-------ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence            68999999998751       23333 445 89999999999887652   2 227899999999999999888888899


Q ss_pred             CCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCC-CCCccc--cCCCC
Q 047461          103 SKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLK-RLPEIS--SGNIS  179 (312)
Q Consensus       103 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~-~~p~~~--~~~L~  179 (312)
                      ++|+.|......  +..++....+..+++|++|++++|.+.+..+..+..+++|++|++++|...+ ..|...  .++|+
T Consensus       101 ~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  178 (306)
T 2z66_A          101 EQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT  178 (306)
T ss_dssp             TTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCC
Confidence            999954443311  3333321267889999999999999777777778889999999999975433 233322  47899


Q ss_pred             eEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC-CCcEEeccCC
Q 047461          180 WLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS-SPITFNLAKT  257 (312)
Q Consensus       180 ~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~L~l~~n  257 (312)
                      .|++++|.++++ |..++.+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|
T Consensus       179 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             EEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence            999999999987 56788899999999999998887777788999999999999999988888888884 9999999999


Q ss_pred             CCc
Q 047461          258 NIE  260 (312)
Q Consensus       258 ~l~  260 (312)
                      +++
T Consensus       259 ~~~  261 (306)
T 2z66_A          259 DFA  261 (306)
T ss_dssp             CEE
T ss_pred             Cee
Confidence            987

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.89  E-value=3e-22  Score=194.11  Aligned_cols=269  Identities=16%  Similarity=0.100  Sum_probs=189.9

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCC-CCC---cc
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKS-LPS---NL   77 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~-~~~---~~   77 (312)
                      .+++.+++..+.. .....+..|.++++|++|++++|.+      ....+..+.. ++|++|++++|.+.. ++.   ..
T Consensus        48 ~~L~~LdLs~n~~-~~~i~~~~f~~L~~L~~L~Ls~N~l------~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~  120 (844)
T 3j0a_A           48 EQLQLLELGSQYT-PLTIDKEAFRNLPNLRILDLGSSKI------YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFR  120 (844)
T ss_dssp             CSCSEEEECTTCC-CCEECTTTTSSCTTCCEEECTTCCC------CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCS
T ss_pred             ccCeEEeCCCCCC-ccccCHHHhcCCCCCCEEECCCCcC------cccCHhHccCCcccCEeeCcCCCCCcccccCcccc
Confidence            3455555554422 2233357788899999999988774      2223455555 788888888887664 222   22


Q ss_pred             CcCCccEEeCCCCcccchh--hhcccCCCchh--cchhhcccc-----------------------cccCCCCCCcCCCc
Q 047461           78 SAEKLMLLEVPDSDIKRLW--DCVKHYSKLNQ--IIHAACHKL-----------------------IAKIPNPTLMPRLN  130 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~~--~~~~~l~~L~~--l~~~~~~~~-----------------------~~~~~~~~~~~~l~  130 (312)
                      .+++|++|++++|.+..++  ..+..+++|+.  ++.+.....                       ....+.  .++.++
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~--~~~~~~  198 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV--DWGKCM  198 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCC--CCCSSS
T ss_pred             ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccccc--chhhcC
Confidence            7778888888888777543  35677777773  333322110                       011122  334444


Q ss_pred             C------CcEEEcCCCCcCcccccccc------------------------------------C--CCcCcEEeccCCCC
Q 047461          131 K------LVTLNLRGSKSLKSLPSGIF------------------------------------N--LEFLTKLDLSGCSK  166 (312)
Q Consensus       131 ~------L~~L~l~~~~~~~~~~~~l~------------------------------------~--~~~L~~L~l~~~~~  166 (312)
                      +      |++|++++|.+.+..+..+.                                    +  .++|+.|++++|..
T Consensus       199 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l  278 (844)
T 3j0a_A          199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV  278 (844)
T ss_dssp             CTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC
T ss_pred             CccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc
Confidence            3      99999999865544333221                                    1  26799999999654


Q ss_pred             CCCCCccc--cCCCCeEEcCCcccccch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhh
Q 047461          167 LKRLPEIS--SGNISWLFLRGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL  243 (312)
Q Consensus       167 l~~~p~~~--~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~  243 (312)
                      ....+...  .++|+.|++++|.++.++ ..++.+++|++|++++|.+.+..+..++.+++|+.|++++|.+....+..+
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  358 (844)
T 3j0a_A          279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF  358 (844)
T ss_dssp             CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS
T ss_pred             cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh
Confidence            43333322  578999999999999764 568889999999999999888888889999999999999998877777778


Q ss_pred             hCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          244 GQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       244 ~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      ..+++|+.|++++|.++.++.    +++|+.|++++|++..
T Consensus       359 ~~l~~L~~L~Ls~N~l~~i~~----~~~L~~L~l~~N~l~~  395 (844)
T 3j0a_A          359 KFLEKLQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVT  395 (844)
T ss_dssp             CSCCCCCEEEEETCCSCCCSS----CCSCSEEEEESCCCCC
T ss_pred             cCCCCCCEEECCCCCCCcccC----CCCcchhccCCCCccc
Confidence            899999999999999997654    7899999999998864

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=7.1e-22  Score=177.99  Aligned_cols=244  Identities=18%  Similarity=0.204  Sum_probs=194.6

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcE
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVT  134 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~  134 (312)
                      ...+.++..+..++.+|..+ .++++.|++++|.+..++ ..+..+++|+.  |+.+..    ..++ +..+..+++|++
T Consensus        43 ~~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i----~~i~-~~~~~~l~~L~~  116 (440)
T 3zyj_A           43 NQFSKVICVRKNLREVPDGI-STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI----RTIE-IGAFNGLANLNT  116 (440)
T ss_dssp             TTSCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCC----CEEC-GGGGTTCSSCCE
T ss_pred             CCCCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcC----CccC-hhhccCCccCCE
Confidence            34567777777788888754 368999999999999776 67889999994  454442    2222 126888999999


Q ss_pred             EEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCC-cccccchH-HHHhcCCCCEEecCCC
Q 047461          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRG-IAIEELPS-SIERLLRLGYLDLSDC  209 (312)
Q Consensus       135 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~n  209 (312)
                      |++++|.+....+..+..+++|++|++++|. +..++...   .++|+.|++++ +.+..++. .+..+++|++|++++|
T Consensus       117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n  195 (440)
T 3zyj_A          117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC  195 (440)
T ss_dssp             EECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred             EECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence            9999998554444568889999999999965 44444322   57899999998 46666665 5788999999999999


Q ss_pred             CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCccccc
Q 047461          210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRI  288 (312)
Q Consensus       210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~  288 (312)
                      .+. .+|. +..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+ +..+..+++|+.|+|++|++.+ .+.
T Consensus       196 ~l~-~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~  272 (440)
T 3zyj_A          196 NLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL-LPH  272 (440)
T ss_dssp             CCS-SCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC-CCT
T ss_pred             cCc-cccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc-cCh
Confidence            865 4554 78899999999999998888889999999999999999999954 4678899999999999999875 444


Q ss_pred             cccCCCCchhHHHhhhcceeeec
Q 047461          289 QHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      ..+..++.++.++...++|.|.|
T Consensus       273 ~~~~~l~~L~~L~L~~Np~~CdC  295 (440)
T 3zyj_A          273 DLFTPLHHLERIHLHHNPWNCNC  295 (440)
T ss_dssp             TTTSSCTTCCEEECCSSCEECSS
T ss_pred             hHhccccCCCEEEcCCCCccCCC
Confidence            55667888888888888888887

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.88  E-value=7.8e-22  Score=178.34  Aligned_cols=243  Identities=18%  Similarity=0.186  Sum_probs=193.9

Q ss_pred             CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchh-hhcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEE
Q 047461           59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTL  135 (312)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L  135 (312)
                      ..+.++.++..+..+|... .+++++|++++|.+..++ ..+..+++|+.  ++.+...   ...+.  .+..+++|++|
T Consensus        55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~---~~~~~--~~~~l~~L~~L  128 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR---QIEVG--AFNGLASLNTL  128 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC---EECTT--TTTTCTTCCEE
T ss_pred             CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC---CcChh--hccCcccCCEE
Confidence            4566777777788888654 368999999999999764 67889999994  4444422   22333  78889999999


Q ss_pred             EcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCC-cccccchH-HHHhcCCCCEEecCCCC
Q 047461          136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRG-IAIEELPS-SIERLLRLGYLDLSDCK  210 (312)
Q Consensus       136 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~-~~l~~l~~-~~~~l~~L~~L~l~~n~  210 (312)
                      ++++|.+....+..+..+++|++|++++|. +..++...   .++|+.|++++ +.++.++. .+..+++|++|++++|.
T Consensus       129 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~  207 (452)
T 3zyi_A          129 ELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN  207 (452)
T ss_dssp             ECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSC
T ss_pred             ECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCc
Confidence            999999555445567889999999999965 44444322   57899999998 57777765 47789999999999998


Q ss_pred             CCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCcccccc
Q 047461          211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRIQ  289 (312)
Q Consensus       211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~  289 (312)
                      +.+ +| .+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.++.+ +..+..+++|+.|+|++|.+.+ .+..
T Consensus       208 l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~  284 (452)
T 3zyi_A          208 IKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS-LPHD  284 (452)
T ss_dssp             CSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred             ccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc-cChH
Confidence            765 44 378899999999999999888899999999999999999999954 5678899999999999999875 4445


Q ss_pred             ccCCCCchhHHHhhhcceeeec
Q 047461          290 HTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      .+..++.++.++...++|.|.|
T Consensus       285 ~~~~l~~L~~L~L~~Np~~CdC  306 (452)
T 3zyi_A          285 LFTPLRYLVELHLHHNPWNCDC  306 (452)
T ss_dssp             SSTTCTTCCEEECCSSCEECST
T ss_pred             HhccccCCCEEEccCCCcCCCC
Confidence            5567788888888888888887

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.88  E-value=6.5e-22  Score=185.79  Aligned_cols=135  Identities=19%  Similarity=0.207  Sum_probs=102.6

Q ss_pred             CCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCC-cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEe
Q 047461          176 GNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLK-SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFN  253 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  253 (312)
                      .+++.++++.|.+... +..+..+++++.|++++|.... ..|..+..+++|++|++++|.+.+..|..|.++++|+.|+
T Consensus       445 ~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          445 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence            5677788888777754 3445677888888888886443 4566778888899999998888777788888889999999


Q ss_pred             ccCCCCcccc-hHhhccCCCcEEEecCCcCCccccccccCCC-CchhHHHhhhcceeeec
Q 047461          254 LAKTNIERIP-ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHT-PAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       254 l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  311 (312)
                      +++|+|+.++ ..+..+++|++|++++|++.+..+ ..+..+ +.++.++...++|.|.|
T Consensus       525 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~~l~~~L~~L~L~~Np~~C~C  583 (635)
T 4g8a_A          525 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK-QELQHFPSSLAFLNLTQNDFACTC  583 (635)
T ss_dssp             CTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS-SCTTCCCTTCCEEECTTCCBCCSG
T ss_pred             CCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH-HHHHhhhCcCCEEEeeCCCCcccC
Confidence            9999888654 567888899999999998876433 334445 45777777788888877

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.88  E-value=1.5e-21  Score=165.82  Aligned_cols=200  Identities=21%  Similarity=0.197  Sum_probs=156.2

Q ss_pred             CCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCc-ccchhhhcccCC
Q 047461           28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSD-IKRLWDCVKHYS  103 (312)
Q Consensus        28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~-~~~~~~~~~~l~  103 (312)
                      .++|++|+++++.+.      ...+..+.. ++|++|++++|.+..++. .+ .+++|++|++++|. +..++       
T Consensus        31 ~~~l~~L~l~~n~i~------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-------   97 (285)
T 1ozn_A           31 PAASQRIFLHGNRIS------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-------   97 (285)
T ss_dssp             CTTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-------
T ss_pred             CCCceEEEeeCCcCC------ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-------
Confidence            468999999998752      122234555 899999999999887743 33 78999999999986 55432       


Q ss_pred             CchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--c-cCCCCe
Q 047461          104 KLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--S-SGNISW  180 (312)
Q Consensus       104 ~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~-~~~L~~  180 (312)
                                       +.  .++.+++|++|++++|.+.+..+..+..+++|++|++++|. +..++..  . .++|+.
T Consensus        98 -----------------~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~  157 (285)
T 1ozn_A           98 -----------------PA--TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTH  157 (285)
T ss_dssp             -----------------TT--TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred             -----------------HH--HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccE
Confidence                             11  45566788888888887665556667778888888888854 3344432  1 468888


Q ss_pred             EEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCC
Q 047461          181 LFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI  259 (312)
Q Consensus       181 L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l  259 (312)
                      |++++|.++.++. .+..+++|++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|++
T Consensus       158 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          158 LFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             EECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            8888888888775 477889999999999998888888899999999999999988877777889999999999999998


Q ss_pred             c
Q 047461          260 E  260 (312)
Q Consensus       260 ~  260 (312)
                      +
T Consensus       238 ~  238 (285)
T 1ozn_A          238 V  238 (285)
T ss_dssp             E
T ss_pred             c
Confidence            7

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.88  E-value=1.4e-22  Score=177.36  Aligned_cols=269  Identities=15%  Similarity=0.101  Sum_probs=193.0

Q ss_pred             CCCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchh-hhcccCCC
Q 047461           28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLW-DCVKHYSK  104 (312)
Q Consensus        28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~  104 (312)
                      ++.....+.+++.+       ..+|..+. ++|++|++++|.+..++. .+ .+++|++|++++|.++.++ ..+..+++
T Consensus        30 C~~~~~c~~~~~~l-------~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  101 (353)
T 2z80_A           30 CDRNGICKGSSGSL-------NSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS  101 (353)
T ss_dssp             ECTTSEEECCSTTC-------SSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CCCCeEeeCCCCCc-------cccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCC
Confidence            44445556655432       23333322 689999999999888876 33 8899999999999998764 56888899


Q ss_pred             chh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccc--cccCCCcCcEEeccCCCCCCCCCccc---cCC
Q 047461          105 LNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPS--GIFNLEFLTKLDLSGCSKLKRLPEIS---SGN  177 (312)
Q Consensus       105 L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~  177 (312)
                      |+.  ++.+.    +..++. ..++.+++|++|++++|.+. .+|.  .+..+++|++|++++|..+..++...   .++
T Consensus       102 L~~L~Ls~n~----l~~~~~-~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~  175 (353)
T 2z80_A          102 LEHLDLSYNY----LSNLSS-SWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTF  175 (353)
T ss_dssp             CCEEECCSSC----CSSCCH-HHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCE
T ss_pred             CCEEECCCCc----CCcCCH-hHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCC
Confidence            984  44444    333443 13678889999999999844 5554  67789999999999976555544322   467


Q ss_pred             CCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhh---hCCCCCcEEe
Q 047461          178 ISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL---GQLSSPITFN  253 (312)
Q Consensus       178 L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~---~~l~~L~~L~  253 (312)
                      |+.|++++|.++.+ |..++.+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+   .....++.++
T Consensus       176 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          176 LEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             EEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred             CCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence            88999999988876 6678888899999999988644333334568899999999988766443322   2456788888


Q ss_pred             ccCCCCc-----ccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461          254 LAKTNIE-----RIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       254 l~~n~l~-----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      ++++.++     .+|..+..+++|++|++++|++.. .+...+..++.++.++...+.|.+.|
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccCcC
Confidence            8888876     467788999999999999999974 44444556777777766666666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.87  E-value=1.2e-20  Score=175.75  Aligned_cols=220  Identities=22%  Similarity=0.230  Sum_probs=146.7

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhc
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI  108 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l  108 (312)
                      ++|++|++++|.+.       .++.  ..++|++|++++|.+..+|.  .+++|++|++++|.++.++.   .+++|+.|
T Consensus        61 ~~L~~L~L~~N~l~-------~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L  126 (622)
T 3g06_A           61 AHITTLVIPDNNLT-------SLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHLPA---LPSGLCKL  126 (622)
T ss_dssp             TTCSEEEECSCCCS-------CCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCCC-------CCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence            67778888776641       1222  12667777777777776665  56677777777777666554   34445422


Q ss_pred             --chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccc-----------------cCCCcCcEEeccCCCCCCC
Q 047461          109 --IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGI-----------------FNLEFLTKLDLSGCSKLKR  169 (312)
Q Consensus       109 --~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----------------~~~~~L~~L~l~~~~~l~~  169 (312)
                        +.+.    +..++.  .   +++|++|++++|.+. .+|..+                 ..+++|+.|++++|. +..
T Consensus       127 ~L~~N~----l~~lp~--~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l~~  195 (622)
T 3g06_A          127 WIFGNQ----LTSLPV--L---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LAS  195 (622)
T ss_dssp             ECCSSC----CSCCCC--C---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-CSC
T ss_pred             ECCCCC----CCcCCC--C---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-CCC
Confidence              2222    222222  1   245555555555422 222211                 134677777777743 444


Q ss_pred             CCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCC
Q 047461          170 LPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSP  249 (312)
Q Consensus       170 ~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L  249 (312)
                      +|... ++|+.|++.+|.++.+|..   +++|+.|++++|.+.+ +|   ..+++|+.|++++|.+. .+|.   .+++|
T Consensus       196 l~~~~-~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L  263 (622)
T 3g06_A          196 LPTLP-SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGL  263 (622)
T ss_dssp             CCCCC-TTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTC
T ss_pred             CCCcc-chhhEEECcCCcccccCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccC
Confidence            55443 6788888888887777642   4789999999987665 55   45688999999998765 5665   67889


Q ss_pred             cEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461          250 ITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       250 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      +.|++++|.++.+|..+..+++|+.|++++|++.+.
T Consensus       264 ~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          264 LSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             cEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCc
Confidence            999999999999999999999999999999998753

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=4.4e-22  Score=181.38  Aligned_cols=167  Identities=10%  Similarity=-0.078  Sum_probs=104.9

Q ss_pred             cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCccccc-chHHHH-hcCCCCEEe
Q 047461          130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE-LPSSIE-RLLRLGYLD  205 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~-l~~~~~-~l~~L~~L~  205 (312)
                      ++|++|++++|.+.+..+.   .+++|+.|++++|...+..|...  .++|+.|++++|.++. .|..+. .+++|++|+
T Consensus        99 ~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~  175 (487)
T 3oja_A           99 PSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN  175 (487)
T ss_dssp             TTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence            4677777777764443332   45667777777754333222221  4567777777777775 334443 577788888


Q ss_pred             cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461          206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      +++|.+.+. +. ...+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++...
T Consensus       176 Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          176 LQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             CTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             cCCCccccc-cc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCc
Confidence            887776554 22 3357778888887776654 44447777788888888888877777777777888888888877632


Q ss_pred             ccccccCCCCchhHHHh
Q 047461          286 LRIQHTNHTPAVRWQEI  302 (312)
Q Consensus       286 ~~~~~~~~~~~~~~~~~  302 (312)
                      .....+..++.++.+..
T Consensus       253 ~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          253 TLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             HHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHhCCCCcEEec
Confidence            33333445555554443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.87  E-value=2.5e-23  Score=179.46  Aligned_cols=234  Identities=12%  Similarity=0.001  Sum_probs=118.0

Q ss_pred             hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccC
Q 047461           24 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHY  102 (312)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l  102 (312)
                      .+..+++|++|++++|.+.+.      .+..+.. ++|++|++++|.+..++....+++|++|++++|.++.++    ..
T Consensus        29 ~~~~~~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~   98 (317)
T 3o53_A           29 LRQSAWNVKELDLSGNPLSQI------SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VG   98 (317)
T ss_dssp             HHTTGGGCSEEECTTSCCCCC------CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE----EC
T ss_pred             HhccCCCCCEEECcCCccCcC------CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc----CC
Confidence            344556777777777654211      1122333 667777777777665554446677777777777666543    22


Q ss_pred             CCchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCC
Q 047461          103 SKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGN  177 (312)
Q Consensus       103 ~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~  177 (312)
                      ++|+.  ++.+..    ..++    ...+++|++|++++|.+.+..+..+..+++|++|++++|......+...   .++
T Consensus        99 ~~L~~L~l~~n~l----~~~~----~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~  170 (317)
T 3o53_A           99 PSIETLHAANNNI----SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (317)
T ss_dssp             TTCCEEECCSSCC----SEEE----ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             CCcCEEECCCCcc----CCcC----ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCc
Confidence            44442  222221    1111    1123456666666665444334445555566666666543222111111   245


Q ss_pred             CCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461          178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT  257 (312)
Q Consensus       178 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n  257 (312)
                      |++|++++|.++.++... .+++|++|++++|++.+. +..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus       171 L~~L~L~~N~l~~~~~~~-~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N  247 (317)
T 3o53_A          171 LEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGN  247 (317)
T ss_dssp             CCEEECTTSCCCEEECCC-CCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTC
T ss_pred             CCEEECCCCcCccccccc-ccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCC
Confidence            555555555555543221 245555555555554432 223555555555555555443 34545555555555555555


Q ss_pred             CCc--ccchHhhccCCCcEEEec
Q 047461          258 NIE--RIPESIIQLFVSGYLLLS  278 (312)
Q Consensus       258 ~l~--~~~~~l~~~~~L~~L~l~  278 (312)
                      +++  .+|..+..+++|+.++++
T Consensus       248 ~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          248 GFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CccCcCHHHHHhccccceEEECC
Confidence            555  444455555555555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.8e-20  Score=159.43  Aligned_cols=132  Identities=26%  Similarity=0.192  Sum_probs=64.7

Q ss_pred             CCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccch-HHHHhcCCCCEEec
Q 047461          128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELP-SSIERLLRLGYLDL  206 (312)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l  206 (312)
                      .+++|++|++++|. ...+|..+..+++|++|++++                      |+++.++ ..++.+++|++|++
T Consensus        75 ~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~----------------------N~l~~l~~~~~~~l~~L~~L~L  131 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSF----------------------NRLTSLPLGALRGLGELQELYL  131 (290)
T ss_dssp             CCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCS----------------------SCCCCCCSSTTTTCTTCCEEEC
T ss_pred             CCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCC----------------------CcCcccCHHHHcCCCCCCEEEC
Confidence            34556666666665 334555555555566666655                      3333333 22344445555555


Q ss_pred             CCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcC
Q 047461          207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      ++|++.+..+..+..+++|+.|++++|.+.+-.+..+..+++|+.|++++|.++.+|..+...++|+.+++++|++
T Consensus       132 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            5554444333334444555555555544433223333444555555555555555554444444555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=5.4e-20  Score=166.08  Aligned_cols=203  Identities=22%  Similarity=0.288  Sum_probs=101.0

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL  137 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  137 (312)
                      ++|++|++++|.+..+|..  ..+|++|++++|.+..+| .+..+++|+.+......  +..++.  .   .++|++|++
T Consensus       153 ~~L~~L~l~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~--l~~l~~--~---~~~L~~L~l  222 (454)
T 1jl5_A          153 SFLKIIDVDNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNS--LKKLPD--L---PLSLESIVA  222 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC--CSSCCC--C---CTTCCEEEC
T ss_pred             CCCCEEECCCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCc--CCcCCC--C---cCcccEEEC
Confidence            5566666666555554432  235566666666555554 34555555532222110  111221  1   124555555


Q ss_pred             CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCC--cC
Q 047461          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLK--SL  215 (312)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~--~~  215 (312)
                      ++|.+. .+|. +..+++|++|++++|. +..+|... .+|+.|++++|.++++|..   +++|++|++++|++.+  .+
T Consensus       223 ~~n~l~-~lp~-~~~l~~L~~L~l~~N~-l~~l~~~~-~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~l~~~  295 (454)
T 1jl5_A          223 GNNILE-ELPE-LQNLPFLTTIYADNNL-LKTLPDLP-PSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSEL  295 (454)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSC-CSSCCSCC-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCC
T ss_pred             cCCcCC-cccc-cCCCCCCCEEECCCCc-CCcccccc-cccCEEECCCCcccccCcc---cCcCCEEECcCCccCcccCc
Confidence            555432 4443 5555666666666532 23333322 4455555555555444332   2344444444444333  11


Q ss_pred             chh-------------hhcC-CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCc
Q 047461          216 PSS-------------LYRL-KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGI  281 (312)
Q Consensus       216 ~~~-------------l~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~  281 (312)
                      |..             +..+ ++|+.|++++|.+.+ +|..   +++|+.|++++|.++.+|.   .+++|++|++++|+
T Consensus       296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~  368 (454)
T 1jl5_A          296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNP  368 (454)
T ss_dssp             CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC
T ss_pred             CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCC
Confidence            111             1112 356677776665543 4432   4667777777777776666   35677777777777


Q ss_pred             CCc
Q 047461          282 VED  284 (312)
Q Consensus       282 ~~~  284 (312)
                      +.+
T Consensus       369 l~~  371 (454)
T 1jl5_A          369 LRE  371 (454)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=2.1e-20  Score=157.87  Aligned_cols=199  Identities=21%  Similarity=0.161  Sum_probs=140.6

Q ss_pred             CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461           58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL  135 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  135 (312)
                      ++|++|++++|.+..++. .+ .+++|++|++++|.+..++.                        .  .++.+++|++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------------------------~--~~~~l~~L~~L   81 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED------------------------G--AYQSLSHLSTL   81 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT------------------------T--TTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH------------------------H--HccCCcCCCEE
Confidence            456777777776666554 22 56677777777766554321                        1  45566778888


Q ss_pred             EcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc---ccCCCCeEEcCCccccc--chHHHHhcCCCCEEecCCCC
Q 047461          136 NLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI---SSGNISWLFLRGIAIEE--LPSSIERLLRLGYLDLSDCK  210 (312)
Q Consensus       136 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~---~~~~L~~L~l~~~~l~~--l~~~~~~l~~L~~L~l~~n~  210 (312)
                      ++++|.+.+..+..+.++++|++|++++|.. ..++..   ..++|+.|++++|.++.  +|..++.+++|++|++++|+
T Consensus        82 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~  160 (276)
T 2z62_A           82 ILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (276)
T ss_dssp             ECTTCCCCEECTTTTTTCTTCCEEECTTSCC-CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             ECCCCccCccChhhhcCCccccEEECCCCCc-cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC
Confidence            8888775555556677778888888887543 333321   14678888888888876  67788888999999999998


Q ss_pred             CCCcCchhhhcCCCCC----eEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hhccCCCcEEEecCCcCCc
Q 047461          211 RLKSLPSSLYRLKSLG----VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-IIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       211 ~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~  284 (312)
                      +.+..+..+..+++|+    .+++++|.+.+..+. .....+|+.|++++|.++.+|.. +..+++|++|++++|++..
T Consensus       161 l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-AFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTT-SSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred             CCcCCHHHhhhhhhccccceeeecCCCcccccCcc-ccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence            8776666666666666    888988876544343 33445899999999999877654 5788999999999998864

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.86  E-value=1.7e-21  Score=167.99  Aligned_cols=227  Identities=14%  Similarity=0.069  Sum_probs=177.2

Q ss_pred             CCccEEeeCCCCCCCCCC-cc-CcCCccEEeCCCCcccchhhhcccCCCchh--cchhhcccccccCCCCCCcCCCcCCc
Q 047461           58 AEVKYLHWHGYPLKSLPS-NL-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLV  133 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~  133 (312)
                      ++|++|++++|.+..++. .+ .+++|++|++++|.+...+. +..+++|+.  ++.+..    ..      +...++|+
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l----~~------l~~~~~L~  102 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV----QE------LLVGPSIE  102 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE----EE------EEECTTCC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc----cc------ccCCCCcC
Confidence            689999999999988774 23 89999999999999986654 788899994  554442    22      22347999


Q ss_pred             EEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccch-HHH-HhcCCCCEEecCC
Q 047461          134 TLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELP-SSI-ERLLRLGYLDLSD  208 (312)
Q Consensus       134 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~-~~~-~~l~~L~~L~l~~  208 (312)
                      +|++++|.+.+..+.   .+++|++|++++|. +..++...   .++|+.|++++|.++.++ ..+ +.+++|++|++++
T Consensus       103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~  178 (317)
T 3o53_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (317)
T ss_dssp             EEECCSSCCSEEEEC---CCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             EEECCCCccCCcCcc---ccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCC
Confidence            999999996554443   47889999999965 44443322   578999999999999764 334 4789999999999


Q ss_pred             CCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccc
Q 047461          209 CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRI  288 (312)
Q Consensus       209 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~  288 (312)
                      |.+.+. +. ...+++|++|++++|.+.+ +|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|++......
T Consensus       179 N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~  255 (317)
T 3o53_A          179 NFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLR  255 (317)
T ss_dssp             SCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred             CcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHH
Confidence            987655 33 3358899999999987764 55568899999999999999999999899999999999999999843444


Q ss_pred             cccCCCCchhHHHh
Q 047461          289 QHTNHTPAVRWQEI  302 (312)
Q Consensus       289 ~~~~~~~~~~~~~~  302 (312)
                      ..+..++.++.++.
T Consensus       256 ~~~~~~~~L~~l~l  269 (317)
T 3o53_A          256 DFFSKNQRVQTVAK  269 (317)
T ss_dssp             HHHHTCHHHHHHHH
T ss_pred             HHHhccccceEEEC
Confidence            44556677766554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=5.6e-20  Score=154.86  Aligned_cols=198  Identities=20%  Similarity=0.222  Sum_probs=89.6

Q ss_pred             CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhh-hcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461           59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWD-CVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL  137 (312)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  137 (312)
                      +.++++++++.++.+|..+ .+++++|++++|.+..++. .+..+++|+.|......  +..++. ..+..+++|++|++
T Consensus        17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~i~~-~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQTLPA-GIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCC-CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--CSCCCT-TTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCccCCCC-CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--cCeeCh-hhhcCCCCCCEEEC
Confidence            3455555555555555432 2455666666655554331 12222222211110000  111111 02344555555666


Q ss_pred             CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCc
Q 047461          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLP  216 (312)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~  216 (312)
                      ++|.+....+..+..+++|++|++++                      |.++.++. .++.+++|++|++++|.+.+..+
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  150 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDR----------------------NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK  150 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCS----------------------SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCC----------------------CccCeeCHHHhCcCcCCCEEECCCCcCCccCH
Confidence            55553332223334455555555555                      44443332 23444555555555555444333


Q ss_pred             hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcC
Q 047461          217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~  282 (312)
                      ..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|++
T Consensus       151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            334455555555555554444333444455555555555555554443 244455555555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.86  E-value=3.9e-21  Score=173.56  Aligned_cols=242  Identities=19%  Similarity=0.165  Sum_probs=130.9

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CC-------------ccEEeeCCCC
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AE-------------VKYLHWHGYP   69 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~-------------L~~L~l~~~~   69 (312)
                      .++.+.+..+..   +..+..++++++|++|++++|.+.      ...+..+.. .+             +++|+++++.
T Consensus        12 ~L~~L~l~~n~l---~~iP~~i~~L~~L~~L~l~~n~~~------~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~   82 (454)
T 1jl5_A           12 FLQEPLRHSSNL---TEMPVEAENVKSKTEYYNAWSEWE------RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG   82 (454)
T ss_dssp             -------------------------CCHHHHHHHHHHHH------HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC
T ss_pred             cchhhhcccCch---hhCChhHhcccchhhhhccCCccc------ccCCcccccchhcchhhhhhhhccCCCEEEecCCc
Confidence            345555554443   344677999999999999997752      234444444 33             4888888888


Q ss_pred             CCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc
Q 047461           70 LKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP  147 (312)
Q Consensus        70 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  147 (312)
                      +..+|..  .++|++|++++|.++.+|..   .++|+.  ++.+.    +..++.   +  .++|++|++++|.+. .+|
T Consensus        83 l~~lp~~--~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~----l~~l~~---~--~~~L~~L~L~~n~l~-~lp  147 (454)
T 1jl5_A           83 LSSLPEL--PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN----LKALSD---L--PPLLEYLGVSNNQLE-KLP  147 (454)
T ss_dssp             CSCCCSC--CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC----CSCCCS---C--CTTCCEEECCSSCCS-SCC
T ss_pred             cccCCCC--cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc----cCcccC---C--CCCCCEEECcCCCCC-CCc
Confidence            7777763  46788888888888776643   355653  33332    222221   1  146777777777744 366


Q ss_pred             ccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCe
Q 047461          148 SGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGV  227 (312)
Q Consensus       148 ~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  227 (312)
                       ++..+++|++|++++|. +..+|... .+|++|++++|.++.+| .++.+++|++|++++|++.+ +|..   .++|++
T Consensus       148 -~~~~l~~L~~L~l~~N~-l~~lp~~~-~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~  219 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNS-LKKLPDLP-PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES  219 (454)
T ss_dssp             -CCTTCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred             -ccCCCCCCCEEECCCCc-CcccCCCc-ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence             36777777777777753 44455443 57777777777777766 45666777777777666544 2221   135566


Q ss_pred             EeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcC
Q 047461          228 LSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       228 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      |++++|.+. .+|. +..+++|+.|++++|.++.+|..   .++|++|++++|.+
T Consensus       220 L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l  269 (454)
T 1jl5_A          220 IVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL  269 (454)
T ss_dssp             EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC
T ss_pred             EECcCCcCC-cccc-cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcc
Confidence            666655443 4442 45555556666655555544432   23444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=5.3e-20  Score=157.94  Aligned_cols=190  Identities=18%  Similarity=0.236  Sum_probs=86.9

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL  137 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  137 (312)
                      ++|++|+++++.+..++....+++|++|++++|.+..++. +..+++|+.|......  +..++   .++.+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~--l~~~~---~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--LKNVS---AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--CSCCG---GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc--CCCch---hhcCCCCCCEEEC
Confidence            4556666666655555544455666666666665554432 2223333211111100  11111   2344445555555


Q ss_pred             CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCch
Q 047461          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPS  217 (312)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~  217 (312)
                      ++|.+ ..++. +..+++|++|++++                      |.++.++. ++.+++|++|++++|.+.+ ++.
T Consensus       115 ~~n~l-~~~~~-l~~l~~L~~L~l~~----------------------n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~  168 (308)
T 1h6u_A          115 TSTQI-TDVTP-LAGLSNLQVLYLDL----------------------NQITNISP-LAGLTNLQYLSIGNAQVSD-LTP  168 (308)
T ss_dssp             TTSCC-CCCGG-GTTCTTCCEEECCS----------------------SCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG
T ss_pred             CCCCC-CCchh-hcCCCCCCEEECCC----------------------CccCcCcc-ccCCCCccEEEccCCcCCC-Chh
Confidence            55552 22332 44555555555555                      44444433 4444555555555554333 222


Q ss_pred             hhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461          218 SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       218 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                       +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.++.+++ +..+++|+.|++++|++.
T Consensus       169 -l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          169 -LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEE
T ss_pred             -hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeee
Confidence             4445555555555544433222  4445555555555555554432 444555555555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=1.3e-20  Score=159.14  Aligned_cols=218  Identities=15%  Similarity=0.104  Sum_probs=167.8

Q ss_pred             CCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcc
Q 047461           66 HGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKS  145 (312)
Q Consensus        66 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  145 (312)
                      .+..+..+|..+ .+++++|++++|.++.++..                          .++.+++|++|++++|.+.+.
T Consensus        15 ~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~--------------------------~~~~l~~L~~L~l~~n~l~~~   67 (276)
T 2z62_A           15 MELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSY--------------------------SFFSFPELQVLDLSRCEIQTI   67 (276)
T ss_dssp             TTSCCSSCCSSS-CTTCCEEECTTCCCCEECTT--------------------------TTTTCTTCSEEECTTCCCCEE
T ss_pred             cCCCccccCCCC-CCCccEEECCCCcccccCHh--------------------------HhccccCCcEEECCCCcCCcc
Confidence            344455566533 25788999998887754311                          466778999999999986655


Q ss_pred             ccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCC-cCchhhhc
Q 047461          146 LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLK-SLPSSLYR  221 (312)
Q Consensus       146 ~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~-~~~~~l~~  221 (312)
                      .+..+..+++|++|++++|......+...  .++|+.|++.+|.++.++. .++.+++|++|++++|.+.+ .+|..++.
T Consensus        68 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~  147 (276)
T 2z62_A           68 EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN  147 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred             CHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence            55578889999999999965433222221  5799999999999998765 57889999999999999876 46888999


Q ss_pred             CCCCCeEeccCCCCCCcchhhhhCCCCCc----EEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCch
Q 047461          222 LKSLGVLSLCGCSNLQRLPECLGQLSSPI----TFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAV  297 (312)
Q Consensus       222 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~----~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~  297 (312)
                      +++|++|++++|.+.+..+..+..+++|+    .|++++|.++.++.......+|++|++++|.+.+. +...+..++.+
T Consensus       148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L  226 (276)
T 2z62_A          148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-PDGIFDRLTSL  226 (276)
T ss_dssp             CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-CTTTTTTCCSC
T ss_pred             CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec-CHhHhcccccc
Confidence            99999999999988776666676666666    89999999998877666677999999999998763 34445567777


Q ss_pred             hHHHhhhcceeeec
Q 047461          298 RWQEIWQEVWLNVC  311 (312)
Q Consensus       298 ~~~~~~~~~~~~~~  311 (312)
                      +.++...+.|.+.|
T Consensus       227 ~~L~l~~N~~~c~c  240 (276)
T 2z62_A          227 QKIWLHTNPWDCSC  240 (276)
T ss_dssp             CEEECCSSCBCCCT
T ss_pred             cEEEccCCcccccC
Confidence            77777777776666

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.85  E-value=2.1e-22  Score=173.25  Aligned_cols=196  Identities=20%  Similarity=0.145  Sum_probs=124.0

Q ss_pred             cCCccEEeCCCCccc-chhhhc--ccCCCchh--cchhhcccccccCCCCCCcCCC-----cCCcEEEcCCCCcCccccc
Q 047461           79 AEKLMLLEVPDSDIK-RLWDCV--KHYSKLNQ--IIHAACHKLIAKIPNPTLMPRL-----NKLVTLNLRGSKSLKSLPS  148 (312)
Q Consensus        79 l~~L~~L~l~~~~~~-~~~~~~--~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~  148 (312)
                      +++|++|++++|.++ .+|..+  ..+++|+.  ++.+.    +...+.  .++.+     ++|++|++++|.+.+..+.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~~--~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS----WATRDA--WLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB----CSSSSS--HHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC----CcchhH--HHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            556666666666665 344443  55666663  33333    222222  33333     6778888887775555556


Q ss_pred             cccCCCcCcEEeccCCCCCCCC--C-c---cccCCCCeEEcCCcccccchH---H-HHhcCCCCEEecCCCCCCCcCc-h
Q 047461          149 GIFNLEFLTKLDLSGCSKLKRL--P-E---ISSGNISWLFLRGIAIEELPS---S-IERLLRLGYLDLSDCKRLKSLP-S  217 (312)
Q Consensus       149 ~l~~~~~L~~L~l~~~~~l~~~--p-~---~~~~~L~~L~l~~~~l~~l~~---~-~~~l~~L~~L~l~~n~~~~~~~-~  217 (312)
                      .+..+++|++|++++|...+..  + .   ...++|+.|++++|.++.++.   . +..+++|++|++++|++.+..| .
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence            6777778888888776543321  1 1   113577788888887774432   2 3456778888888877766553 3


Q ss_pred             hhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          218 SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       218 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      .+..+++|++|++++|.+. .+|..+.  ++|+.|++++|+++.+|. +..+++|++|++++|++.+
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence            3455677888888877665 6666554  678888888888876666 7777888888888887764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=9.2e-22  Score=179.24  Aligned_cols=230  Identities=13%  Similarity=-0.004  Sum_probs=180.3

Q ss_pred             CCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch
Q 047461           28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN  106 (312)
Q Consensus        28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~  106 (312)
                      +++|++|++++|.+.+      ..+..+.. ++|++|++++|.+...++...+++|++|++++|.++.++.    .++|+
T Consensus        33 ~~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~----~~~L~  102 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQ------ISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV----GPSIE  102 (487)
T ss_dssp             GGGCCEEECCSSCCCC------CCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE----CTTCC
T ss_pred             CCCccEEEeeCCcCCC------CCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC----CCCcC
Confidence            3489999999987522      22234555 8999999999998766665588999999999999887653    36777


Q ss_pred             h--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeE
Q 047461          107 Q--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWL  181 (312)
Q Consensus       107 ~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L  181 (312)
                      .  ++.+..    ..++    ...+++|++|++++|.+.+..|..+..+++|++|++++|...+..|...   .++|+.|
T Consensus       103 ~L~L~~N~l----~~~~----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L  174 (487)
T 3oja_A          103 TLHAANNNI----SRVS----CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL  174 (487)
T ss_dssp             EEECCSSCC----CCEE----ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEE
T ss_pred             EEECcCCcC----CCCC----ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEE
Confidence            4  444432    2222    1346789999999999777777788889999999999976544333322   4789999


Q ss_pred             EcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-
Q 047461          182 FLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-  260 (312)
Q Consensus       182 ~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-  260 (312)
                      ++++|.++.++.. ..+++|++|++++|.+.+.. ..++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. 
T Consensus       175 ~Ls~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          175 NLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             ECTTSCCCEEECC-CCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCH
T ss_pred             ecCCCcccccccc-ccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcC
Confidence            9999999988653 35889999999999987654 45889999999999998876 48888889999999999999998 


Q ss_pred             -ccchHhhccCCCcEEEec
Q 047461          261 -RIPESIIQLFVSGYLLLS  278 (312)
Q Consensus       261 -~~~~~l~~~~~L~~L~l~  278 (312)
                       .+|..+..++.|+.+++.
T Consensus       252 ~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          252 GTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHhCCCCcEEecc
Confidence             777888888888888875

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=3e-20  Score=156.66  Aligned_cols=194  Identities=18%  Similarity=0.130  Sum_probs=101.8

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL  137 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  137 (312)
                      .+|+.|+++++.+..++....+++|++|++++|.+..++                            .++.+++|++|++
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~----------------------------~l~~l~~L~~L~L   92 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS----------------------------ALKELTNLTYLIL   92 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG----------------------------GGTTCTTCCEEEC
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch----------------------------hhcCCCCCCEEEC
Confidence            556666666666555555445666666666666554321                            2333445555555


Q ss_pred             CCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--c-cCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCCCCC
Q 047461          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--S-SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCKRLK  213 (312)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~-~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~~~~  213 (312)
                      ++|.+.+..+..+..+++|++|++++|. +..++..  . .++|+.|++++|.++.++.. ++.+++|++|++++|++.+
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  171 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS  171 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc
Confidence            5554333333334445555555555533 2222221  1 23455555555555544432 3455666666666666555


Q ss_pred             cCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccc
Q 047461          214 SLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       214 ~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~  286 (312)
                      ..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.      +.+++++.+++..|.+.+..
T Consensus       172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~i  238 (272)
T 3rfs_A          172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVV  238 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGB
T ss_pred             cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcc
Confidence            44444556666666666666655555555566666666666666554      22445555555555555543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=3.4e-20  Score=157.70  Aligned_cols=179  Identities=20%  Similarity=0.149  Sum_probs=143.2

Q ss_pred             cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCC
Q 047461          130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSD  208 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~  208 (312)
                      +.++.|++++|.+.+..+..+..+++|++|++++|. +..++... .++|+.|++++|.++.+|..+..+++|++|++++
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~  109 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF  109 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence            378889999988666666778888999999999854 44343323 5789999999999999998888999999999999


Q ss_pred             CCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchH-hhccCCCcEEEecCCcCCcccc
Q 047461          209 CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPES-IIQLFVSGYLLLSYGIVEDTLR  287 (312)
Q Consensus       209 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~~~~  287 (312)
                      |++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+++.+|.. +..+++|++|++++|++..-+.
T Consensus       110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~  189 (290)
T 1p9a_G          110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK  189 (290)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccCh
Confidence            998877777899999999999999988877777788999999999999999988764 5789999999999999874322


Q ss_pred             ccccCCCCchhHHHhhhcceeeec
Q 047461          288 IQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                       . +-..+.++.++...++|.|.|
T Consensus       190 -~-~~~~~~L~~l~L~~Np~~C~c  211 (290)
T 1p9a_G          190 -G-FFGSHLLPFAFLHGNPWLCNC  211 (290)
T ss_dssp             -T-TTTTCCCSEEECCSCCBCCSG
T ss_pred             -h-hcccccCCeEEeCCCCccCcC
Confidence             1 223445555555666666655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.84  E-value=1.5e-19  Score=168.31  Aligned_cols=232  Identities=21%  Similarity=0.165  Sum_probs=161.8

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhc
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQI  108 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l  108 (312)
                      .+++.|+++++.+       ..+|..+. ++|++|++++|.+..+|.  .+++|++|++++|.++.+|.   .+++|+.|
T Consensus        40 ~~l~~L~ls~n~L-------~~lp~~l~-~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L  106 (622)
T 3g06_A           40 NGNAVLNVGESGL-------TTLPDCLP-AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLEL  106 (622)
T ss_dssp             HCCCEEECCSSCC-------SCCCSCCC-TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred             CCCcEEEecCCCc-------CccChhhC-CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence            4689999999765       23344333 789999999999999887  67899999999999998876   67888844


Q ss_pred             --chhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461          109 --IHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI  186 (312)
Q Consensus       109 --~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~  186 (312)
                        +.+.    +..++.     .+++|++|++++|. ...+|.   .+++|++|++++|. +..+|... .+|+.|++.+|
T Consensus       107 ~Ls~N~----l~~l~~-----~l~~L~~L~L~~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~l~~~~-~~L~~L~L~~N  171 (622)
T 3g06_A          107 SIFSNP----LTHLPA-----LPSGLCKLWIFGNQ-LTSLPV---LPPGLQELSVSDNQ-LASLPALP-SELCKLWAYNN  171 (622)
T ss_dssp             EECSCC----CCCCCC-----CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCCCC-TTCCEEECCSS
T ss_pred             ECcCCc----CCCCCC-----CCCCcCEEECCCCC-CCcCCC---CCCCCCEEECcCCc-CCCcCCcc-CCCCEEECCCC
Confidence              4443    333332     45689999999998 555676   35889999999964 44455433 56777777777


Q ss_pred             ccccchHHHHhcCCCCEEecCCCCCCCcCchh---hh--------------cCCCCCeEeccCCCCCCcchhhhhCCCCC
Q 047461          187 AIEELPSSIERLLRLGYLDLSDCKRLKSLPSS---LY--------------RLKSLGVLSLCGCSNLQRLPECLGQLSSP  249 (312)
Q Consensus       187 ~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~---l~--------------~l~~L~~L~l~~~~~~~~~p~~~~~l~~L  249 (312)
                      .++.+|   ..+++|+.|++++|.+.+ +|..   +.              .+++|+.|++++|.+.+ +|   ..+++|
T Consensus       172 ~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-lp---~~l~~L  243 (622)
T 3g06_A          172 QLTSLP---MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP---VLPSEL  243 (622)
T ss_dssp             CCSCCC---CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CC---CCCTTC
T ss_pred             CCCCCc---ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-CC---CCCCcC
Confidence            777666   345566666666665543 2211   11              12567888888776544 55   456788


Q ss_pred             cEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHH
Q 047461          250 ITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE  301 (312)
Q Consensus       250 ~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  301 (312)
                      +.|++++|.++.+|.   .+++|+.|++++|.+..- + ..+..++.++.++
T Consensus       244 ~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~l-p-~~l~~l~~L~~L~  290 (622)
T 3g06_A          244 KELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRL-P-ESLIHLSSETTVN  290 (622)
T ss_dssp             CEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSC-C-GGGGGSCTTCEEE
T ss_pred             cEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcC-C-HHHhhccccCEEE
Confidence            999999998888777   578899999999988743 2 2244555555443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=162.33  Aligned_cols=221  Identities=19%  Similarity=0.068  Sum_probs=159.1

Q ss_pred             CCccEEeeCCCCCCC-----CCCccCcCCccEEeCCCCcccc-hhhhc--ccCCCchhc--chhhcccccccCC-CCCCc
Q 047461           58 AEVKYLHWHGYPLKS-----LPSNLSAEKLMLLEVPDSDIKR-LWDCV--KHYSKLNQI--IHAACHKLIAKIP-NPTLM  126 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~-----~~~~~~l~~L~~L~l~~~~~~~-~~~~~--~~l~~L~~l--~~~~~~~~~~~~~-~~~~~  126 (312)
                      ..++.+.+.++.+..     +.....+++|++|++++|.+.. .+..+  ..+++|+.|  +.+........++ .  .+
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~--~~  141 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAEL--QQ  141 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHH--HT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHH--Hh
Confidence            456666666655432     1111234567778887777763 34444  667777743  3333211000000 1  33


Q ss_pred             CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCC--CC--c--cccCCCCeEEcCCcccccchHH----HH
Q 047461          127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LP--E--ISSGNISWLFLRGIAIEELPSS----IE  196 (312)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~--~p--~--~~~~~L~~L~l~~~~l~~l~~~----~~  196 (312)
                      ..+++|++|++++|.+.+..+..+..+++|++|++++|...+.  ++  .  ...++|++|++++|.++.++..    ++
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~  221 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAA  221 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHh
Confidence            4688999999999997666667888999999999999764321  11  1  1246899999999999877653    56


Q ss_pred             hcCCCCEEecCCCCCCCcCchhhhcC---CCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCc
Q 047461          197 RLLRLGYLDLSDCKRLKSLPSSLYRL---KSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSG  273 (312)
Q Consensus       197 ~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~  273 (312)
                      .+++|++|++++|++.+..|..++.+   ++|++|++++|.+. .+|..+.  ++|+.|++++|+++.+|. +..+++|+
T Consensus       222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~  297 (310)
T 4glp_A          222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVD  297 (310)
T ss_dssp             HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCS
T ss_pred             cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCcc
Confidence            78999999999999988877777766   69999999998876 6777654  899999999999998766 67889999


Q ss_pred             EEEecCCcCCc
Q 047461          274 YLLLSYGIVED  284 (312)
Q Consensus       274 ~L~l~~n~~~~  284 (312)
                      .|++++|++.+
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            99999999875

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=8.3e-22  Score=169.57  Aligned_cols=238  Identities=16%  Similarity=0.091  Sum_probs=175.8

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccc--hhhhcc-------cCCCchhcchhhcccccccCCCCCCc--
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKR--LWDCVK-------HYSKLNQIIHAACHKLIAKIPNPTLM--  126 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~-------~l~~L~~l~~~~~~~~~~~~~~~~~~--  126 (312)
                      .+|+++++++|.+ .+|.... ..++.|++++|.+..  ++....       .+++|+.|...... +....+.  .+  
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~~  117 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-VTGTAPP--PLLE  117 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-CBSCCCC--CSSS
T ss_pred             CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-ccchhHH--HHHH
Confidence            5688888888888 6665331 238888999988863  444433       68889854443321 1234454  54  


Q ss_pred             CCCcCCcEEEcCCCCcCccccccccCC-----CcCcEEeccCCCCCCCCC-ccc--cCCCCeEEcCCccccc---chHHH
Q 047461          127 PRLNKLVTLNLRGSKSLKSLPSGIFNL-----EFLTKLDLSGCSKLKRLP-EIS--SGNISWLFLRGIAIEE---LPSSI  195 (312)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~l~~~p-~~~--~~~L~~L~l~~~~l~~---l~~~~  195 (312)
                      +.+++|++|++++|.+.+. |..+..+     ++|++|++++|.. ..++ ...  .++|+.|++++|.+.+   ++..+
T Consensus       118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence            7899999999999996655 7666666     8999999999654 4444 222  5789999999998764   34444


Q ss_pred             --HhcCCCCEEecCCCCCCC--cCc-hhhhcCCCCCeEeccCCCCCCcch-hhhhCCCCCcEEeccCCCCcccchHhhcc
Q 047461          196 --ERLLRLGYLDLSDCKRLK--SLP-SSLYRLKSLGVLSLCGCSNLQRLP-ECLGQLSSPITFNLAKTNIERIPESIIQL  269 (312)
Q Consensus       196 --~~l~~L~~L~l~~n~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~l~~~  269 (312)
                        +.+++|++|++++|++.+  .++ ..+..+++|++|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+.  
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--  273 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--  273 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--
Confidence              788999999999998763  223 334578999999999999887664 445568999999999999999988776  


Q ss_pred             CCCcEEEecCCcCCccccccccCCCCchhHHHhhhcce
Q 047461          270 FVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVW  307 (312)
Q Consensus       270 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (312)
                      ++|++|++++|++.+.+.   +..++.++.++...+.+
T Consensus       274 ~~L~~L~Ls~N~l~~~p~---~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          274 AKLSVLDLSYNRLDRNPS---PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             SEEEEEECCSSCCCSCCC---TTTSCEEEEEECTTCTT
T ss_pred             CCceEEECCCCCCCCChh---HhhCCCCCEEeccCCCC
Confidence            899999999999988633   45677777665544433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.83  E-value=1.5e-21  Score=172.91  Aligned_cols=245  Identities=13%  Similarity=0.068  Sum_probs=154.8

Q ss_pred             cCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCC----c--------cCcCCccE
Q 047461           18 LHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPS----N--------LSAEKLML   84 (312)
Q Consensus        18 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~--------~~l~~L~~   84 (312)
                      +......+..+++|++|++++|.+....  ...+...+.. ++|++|++++|.+..+..    .        ..+++|++
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~   98 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT   98 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSEECHHH--HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCHHH--HHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence            3344567778899999999998763321  1122233444 889999999876554321    1        25678888


Q ss_pred             EeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc----ccccCC-------
Q 047461           85 LEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP----SGIFNL-------  153 (312)
Q Consensus        85 L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~~-------  153 (312)
                      |++++|.+.....                    ..++.  .+..+++|++|++++|.+....+    ..+..+       
T Consensus        99 L~Ls~n~l~~~~~--------------------~~l~~--~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~  156 (386)
T 2ca6_A           99 VRLSDNAFGPTAQ--------------------EPLID--FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAK  156 (386)
T ss_dssp             EECCSCCCCTTTH--------------------HHHHH--HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCcCCHHHH--------------------HHHHH--HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcc
Confidence            8888887764100                    00111  33445567777777776432222    222222       


Q ss_pred             --CcCcEEeccCCCCC-CCCCcc-----ccCCCCeEEcCCccccc-----chH-HHHhcCCCCEEecCCCCCC----CcC
Q 047461          154 --EFLTKLDLSGCSKL-KRLPEI-----SSGNISWLFLRGIAIEE-----LPS-SIERLLRLGYLDLSDCKRL----KSL  215 (312)
Q Consensus       154 --~~L~~L~l~~~~~l-~~~p~~-----~~~~L~~L~l~~~~l~~-----l~~-~~~~l~~L~~L~l~~n~~~----~~~  215 (312)
                        ++|++|++++|... ..++..     ..++|+.|++++|.++.     +.. .+..+++|++|++++|.+.    ..+
T Consensus       157 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l  236 (386)
T 2ca6_A          157 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL  236 (386)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH
T ss_pred             cCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHH
Confidence              67777777775433 122311     13577777777777762     222 5667778888888888764    456


Q ss_pred             chhhhcCCCCCeEeccCCCCCCc----chhhhhC--CCCCcEEeccCCCCcc-----cchHh-hccCCCcEEEecCCcCC
Q 047461          216 PSSLYRLKSLGVLSLCGCSNLQR----LPECLGQ--LSSPITFNLAKTNIER-----IPESI-IQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       216 ~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~--l~~L~~L~l~~n~l~~-----~~~~l-~~~~~L~~L~l~~n~~~  283 (312)
                      +..+..+++|++|++++|.+.+.    ++..+..  +++|+.|++++|.++.     +|..+ ..+++|++|++++|++.
T Consensus       237 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          237 AIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             HHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            66777788888888888776654    4566533  7888888888888875     66666 55788888888888876


Q ss_pred             ccc
Q 047461          284 DTL  286 (312)
Q Consensus       284 ~~~  286 (312)
                      +..
T Consensus       317 ~~~  319 (386)
T 2ca6_A          317 EED  319 (386)
T ss_dssp             TTS
T ss_pred             cch
Confidence            544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=2.1e-18  Score=145.12  Aligned_cols=197  Identities=21%  Similarity=0.221  Sum_probs=135.0

Q ss_pred             CCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchhhh-cccCCCch
Q 047461           30 KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLWDC-VKHYSKLN  106 (312)
Q Consensus        30 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~~-~~~l~~L~  106 (312)
                      +.+.++++++.+       ..+|..+. .++++|+++++.+..++.. + .+++|++|++++|.++.++.. +..+++|+
T Consensus        17 ~~~~l~~~~~~l-------~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           17 NKNSVDCSSKKL-------TAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TTTEEECTTSCC-------SSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCC
T ss_pred             CCCEEEccCCCC-------CccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCC
Confidence            467788877553       22333222 6788899998888877752 3 788899999999888877754 46788888


Q ss_pred             h--cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcC
Q 047461          107 Q--IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLR  184 (312)
Q Consensus       107 ~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~  184 (312)
                      .  ++.+.    +..++. ..+..+++|++|++++|.+....+..+..+++|++|++++|. +..+|.            
T Consensus        89 ~L~l~~n~----l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------  150 (270)
T 2o6q_A           89 TLWVTDNK----LQALPI-GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPK------------  150 (270)
T ss_dssp             EEECCSSC----CCCCCT-TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCT------------
T ss_pred             EEECCCCc----CCcCCH-hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCH------------
Confidence            4  44444    333332 256789999999999999665555566778888888887743 333332            


Q ss_pred             CcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          185 GIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       185 ~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                              ..++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       151 --------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          151 --------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             --------hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence                    12445667777777777766655556677777888888777666544555677778888888888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=7.6e-19  Score=150.72  Aligned_cols=184  Identities=22%  Similarity=0.239  Sum_probs=143.3

Q ss_pred             CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461           78 SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT  157 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  157 (312)
                      .+++|++|+++++.+..++                            .+..+++|++|++++|. ...++. +..+++|+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~----------------------------~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~   88 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIE----------------------------GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKIT   88 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCT----------------------------TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCC
T ss_pred             HcCCcCEEEeeCCCccCch----------------------------hhhccCCCCEEEccCCc-CCCChh-HccCCCCC
Confidence            5667777777776655432                            34556688889998887 444555 77888899


Q ss_pred             EEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCC
Q 047461          158 KLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNL  236 (312)
Q Consensus       158 ~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~  236 (312)
                      +|++++|. +..++... .++|+.|++++|.++.++. ++.+++|++|++++|.+.+. +. ++.+++|+.|++++|.+.
T Consensus        89 ~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~  164 (308)
T 1h6u_A           89 ELELSGNP-LKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVS  164 (308)
T ss_dssp             EEECCSCC-CSCCGGGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCC
T ss_pred             EEEccCCc-CCCchhhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCC
Confidence            99999855 55555444 5789999999999998875 78899999999999987654 33 789999999999998776


Q ss_pred             CcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHH
Q 047461          237 QRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE  301 (312)
Q Consensus       237 ~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  301 (312)
                      + ++. +..+++|+.|++++|.++.++. +..+++|++|++++|++.+..++.   .++.++.++
T Consensus       165 ~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~l~---~l~~L~~L~  223 (308)
T 1h6u_A          165 D-LTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVT  223 (308)
T ss_dssp             C-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGGGT---TCTTCCEEE
T ss_pred             C-Chh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccccc---CCCCCCEEE
Confidence            5 443 8899999999999999997766 789999999999999998876654   455555443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=2.3e-19  Score=151.22  Aligned_cols=158  Identities=22%  Similarity=0.254  Sum_probs=132.7

Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc--c-cCCCCeEEcCCcccccchHH-HHhcCC
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI--S-SGNISWLFLRGIAIEELPSS-IERLLR  200 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~--~-~~~L~~L~l~~~~l~~l~~~-~~~l~~  200 (312)
                      .++.+++|++|++++|.+.+ ++ .+..+++|++|++++|. +..++..  . .++|++|++++|.++.++.. ++.+++
T Consensus        58 ~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           58 GIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             TGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             ccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCC
Confidence            45667899999999998544 44 58899999999999965 4444432  2 57999999999999988764 688999


Q ss_pred             CCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecC
Q 047461          201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSY  279 (312)
Q Consensus       201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~  279 (312)
                      |++|++++|.+.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|++|++++
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  214 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD  214 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence            9999999999887777778899999999999999887777778899999999999999996654 578899999999999


Q ss_pred             CcCCcc
Q 047461          280 GIVEDT  285 (312)
Q Consensus       280 n~~~~~  285 (312)
                      |++.+.
T Consensus       215 N~~~~~  220 (272)
T 3rfs_A          215 NPWDCT  220 (272)
T ss_dssp             SCBCCC
T ss_pred             CCcccc
Confidence            987653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=3.1e-20  Score=161.23  Aligned_cols=247  Identities=19%  Similarity=0.195  Sum_probs=168.4

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCC-ccCcCCccEEeCCCCcccc--hhhhcccCCCc
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPS-NLSAEKLMLLEVPDSDIKR--LWDCVKHYSKL  105 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~l~~L  105 (312)
                      ..++.++++++.+...      ....+...+++.++++++.+...+. .+.+++|++|++++|.+..  ++..+..+++|
T Consensus        47 ~~~~~l~l~~~~~~~~------~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLHPD------VTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCCHH------HHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hhheeeccccccCCHH------HHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            3478889887654211      0011101678999999988665543 4488999999999998873  66677888888


Q ss_pred             hhcchhhcccccccCCCCCCcCCCcCCcEEEcCCC-CcCc-cccccccCCCcCcEEeccCCCCCCC--CCccc--cC-CC
Q 047461          106 NQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGS-KSLK-SLPSGIFNLEFLTKLDLSGCSKLKR--LPEIS--SG-NI  178 (312)
Q Consensus       106 ~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-~~~~~l~~~~~L~~L~l~~~~~l~~--~p~~~--~~-~L  178 (312)
                      +.|....+. +....+.  .++.+++|++|++++| .+.+ .++..+..+++|++|++++|..+..  ++...  .+ +|
T Consensus       121 ~~L~L~~~~-l~~~~~~--~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          121 QNLSLEGLR-LSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             SEEECTTCB-CCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CEEeCcCcc-cCHHHHH--HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            855544432 1222333  5677889999999998 4443 2566567788999999999734442  23222  46 89


Q ss_pred             CeEEcCCcc--cc--cchHHHHhcCCCCEEecCCCC-CCCcCchhhhcCCCCCeEeccCCC-CCCcchhhhhCCCCCcEE
Q 047461          179 SWLFLRGIA--IE--ELPSSIERLLRLGYLDLSDCK-RLKSLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQLSSPITF  252 (312)
Q Consensus       179 ~~L~l~~~~--l~--~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L  252 (312)
                      +.|++++|.  ++  .++..++.+++|++|++++|. +.+..+..++.+++|++|++++|. +.......+..+++|+.|
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  277 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  277 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence            999999984  43  577778888999999999988 555666778888999999998884 333333467788999999


Q ss_pred             eccCCCCcccchHhhcc-CCCcEEEecCCcCCcccc
Q 047461          253 NLAKTNIERIPESIIQL-FVSGYLLLSYGIVEDTLR  287 (312)
Q Consensus       253 ~l~~n~l~~~~~~l~~~-~~L~~L~l~~n~~~~~~~  287 (312)
                      ++++| ++.  ..+..+ ..++.|++++|.+.+..+
T Consensus       278 ~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          278 QVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             ECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             eccCc-cCH--HHHHHHHhhCcceEEecccCccccC
Confidence            99988 541  112222 235666688888876544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=3.8e-18  Score=142.04  Aligned_cols=174  Identities=24%  Similarity=0.254  Sum_probs=113.9

Q ss_pred             CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461           59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR  138 (312)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  138 (312)
                      ..++++++++.+..+|.... ++++.|++++|.+..++..                          .++.+++|++|+++
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~--------------------------~~~~l~~L~~L~L~   67 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDA--------------------------TFRGLTKLTWLNLD   67 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTT--------------------------TTTTCTTCCEEECT
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHh--------------------------HhcCcccCCEEECC
Confidence            45667777777777775443 5677777777776543211                          45556677777777


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCCCCCc
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCKRLKS  214 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~~~~~  214 (312)
                      +|.+.+..+..+..+++|++|++++|. +..++...   .++|+.|++++|.++.++.. ++.+++|++|++++|++.+.
T Consensus        68 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  146 (251)
T 3m19_A           68 YNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI  146 (251)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc
Confidence            777555555556667777777777744 33333211   35666666666666666543 45677777777777776655


Q ss_pred             CchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          215 LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       215 ~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      .+..++.+++|++|++++|.+.+..+..+..+++|+.|++++|+++
T Consensus       147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          147 PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            5556777777777777777766655666777777777777777776

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=7.8e-21  Score=172.04  Aligned_cols=158  Identities=18%  Similarity=0.087  Sum_probs=97.4

Q ss_pred             cCCCcCCcEEEcCCCCcCccc-----cccccCCCcCcEEeccCCCCCCC-----CCccc--cCCCCeEEcCCcccccch-
Q 047461          126 MPRLNKLVTLNLRGSKSLKSL-----PSGIFNLEFLTKLDLSGCSKLKR-----LPEIS--SGNISWLFLRGIAIEELP-  192 (312)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~~l~~-----~p~~~--~~~L~~L~l~~~~l~~l~-  192 (312)
                      +..+++|++|++++|.+....     +.....+++|++|++++|. +..     ++...  .++|+.|++++|.++... 
T Consensus       223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  301 (461)
T 1z7x_W          223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA  301 (461)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred             HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence            344566677777766533221     1112235667777777653 222     22211  356777777777665321 


Q ss_pred             HHHHh-----cCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCcchhhhhC-----CCCCcEEeccCCC
Q 047461          193 SSIER-----LLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQ-----LSSPITFNLAKTN  258 (312)
Q Consensus       193 ~~~~~-----l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~-----l~~L~~L~l~~n~  258 (312)
                      ..+..     .++|++|++++|.+.+.    ++..+..+++|++|++++|.+.+..+..+..     .++|+.|++++|.
T Consensus       302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence            11221     24777777777766543    4455666788888888887765554444432     5688888888888


Q ss_pred             Cc-----ccchHhhccCCCcEEEecCCcCCc
Q 047461          259 IE-----RIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       259 l~-----~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      ++     .+|..+..+++|++|++++|++.+
T Consensus       382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          382 VSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            87     567777788888888888888865

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.80  E-value=2.5e-21  Score=175.35  Aligned_cols=109  Identities=18%  Similarity=0.081  Sum_probs=57.8

Q ss_pred             CCCCeEEcCCcccccc-----hHH-HHhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCcchhhhhC
Q 047461          176 GNISWLFLRGIAIEEL-----PSS-IERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQ  245 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l-----~~~-~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~  245 (312)
                      ++|+.|++++|.++..     ... ...+++|++|++++|.+...    ++..+..+++|++|++++|.+.+..+..+..
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            4555555555555431     111 11345566666665554432    3444555566666666665544332222221


Q ss_pred             -----CCCCcEEeccCCCCcc-----cchHhhccCCCcEEEecCCcCCc
Q 047461          246 -----LSSPITFNLAKTNIER-----IPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       246 -----l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                           .++|+.|++++|.++.     ++..+..+++|++|++++|.+.+
T Consensus       307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~  355 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED  355 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred             HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence                 2466666666666652     34455666777777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.6e-19  Score=149.31  Aligned_cols=194  Identities=16%  Similarity=0.187  Sum_probs=117.6

Q ss_pred             CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCc-ccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461           58 AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSD-IKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT  134 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  134 (312)
                      .++++|++++|.++.++.. + .+++|++|++++|. ++.++..                          .+..+++|++
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~--------------------------~f~~l~~L~~   84 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH--------------------------SFYNLSKVTH   84 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT--------------------------TEESCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh--------------------------HcCCCcCCcE
Confidence            4566666666666665552 2 56666666666664 5544321                          3444556666


Q ss_pred             EEcCC-CCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCC---eEEcCCc-ccccchH-HHHhcCCCC-EEec
Q 047461          135 LNLRG-SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNIS---WLFLRGI-AIEELPS-SIERLLRLG-YLDL  206 (312)
Q Consensus       135 L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~---~L~l~~~-~l~~l~~-~~~~l~~L~-~L~l  206 (312)
                      |++++ |.+....+..+..+++|++|++++|. +..+|... ..+++   .|++++| .++.++. .++.+++|+ +|++
T Consensus        85 L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C           85 IEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             EECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence            66665 55332223344556666666666643 33344322 23444   6666666 6666654 356677788 8888


Q ss_pred             CCCCCCCcCchhhhcCCCCCeEeccCCC-CCCcchhhhhCC-CCCcEEeccCCCCcccchHhhccCCCcEEEecCCc
Q 047461          207 SDCKRLKSLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQL-SSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGI  281 (312)
Q Consensus       207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l-~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~  281 (312)
                      ++|.+. .+|......++|+.|++++|. +.+..+..+..+ ++|+.|++++|+++.+|..  .+++|+.|+++++.
T Consensus       164 ~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          164 YNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             CSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             CCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            887765 444433344778888888874 554445567777 7888888888888877764  57788888887763

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.79  E-value=4.3e-18  Score=159.76  Aligned_cols=222  Identities=18%  Similarity=0.159  Sum_probs=169.4

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccc---hhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKR---LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT  134 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  134 (312)
                      ..|+.+.+..+.....+....++.|+.+++++|.+..   .+.....+.+|+.+......  ....+.  .+..+++|+.
T Consensus       349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~--~~~~~~--~~~~l~~L~~  424 (635)
T 4g8a_A          349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG--VITMSS--NFLGLEQLEH  424 (635)
T ss_dssp             TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS--EEEECS--CCTTCTTCCE
T ss_pred             hhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccc--cccccc--cccccccccc
Confidence            5677778777776666655578899999999988763   23445566777744333211  223333  6777889999


Q ss_pred             EEcCCCCcCcccc-ccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccc-c-chHHHHhcCCCCEEecCCC
Q 047461          135 LNLRGSKSLKSLP-SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIE-E-LPSSIERLLRLGYLDLSDC  209 (312)
Q Consensus       135 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~-~-l~~~~~~l~~L~~L~l~~n  209 (312)
                      +++.++......+ ..+..+++++.++++.|......+...  .+.++.|++++|.+. . .|..++.+++|++|++++|
T Consensus       425 l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N  504 (635)
T 4g8a_A          425 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC  504 (635)
T ss_dssp             EECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred             hhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC
Confidence            9999887555443 345678999999999965444333332  468999999998654 3 5667888999999999999


Q ss_pred             CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhcc-CCCcEEEecCCcCC
Q 047461          210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQL-FVSGYLLLSYGIVE  283 (312)
Q Consensus       210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~-~~L~~L~l~~n~~~  283 (312)
                      ++.+..|..++.+++|++|++++|++.+-.|..+..+++|+.|++++|+++.+ |..+..+ ++|++|++++|++.
T Consensus       505 ~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          505 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            99888888899999999999999998887788899999999999999999954 5667777 68999999999885

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=3.9e-19  Score=154.27  Aligned_cols=234  Identities=17%  Similarity=0.155  Sum_probs=175.7

Q ss_pred             CccEEeeCCCCCCCCCCcc-Cc--CCccEEeCCCCcccchhhhcccCCCchhcchhhccccccc-CCCCCCcCCCcCCcE
Q 047461           59 EVKYLHWHGYPLKSLPSNL-SA--EKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAK-IPNPTLMPRLNKLVT  134 (312)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~-~l--~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~-~~~~~~~~~l~~L~~  134 (312)
                      .++.++++++.+.  +..+ .+  +.++.+++++|.+...+..+..+++|+.|....+. +... ++.  .+..+++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~--~~~~~~~L~~  122 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHG--ILSQCSKLQN  122 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-ECHHHHHH--HHTTBCCCSE
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-cCHHHHHH--HHhhCCCCCE
Confidence            4788999887655  2222 44  78999999999988766666778899855444432 1111 443  5678899999


Q ss_pred             EEcCCCCcCccccccccCCCcCcEEeccCCCCCCC--CCccc--cCCCCeEEcCCc-cccc--chHHHHhcC-CCCEEec
Q 047461          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR--LPEIS--SGNISWLFLRGI-AIEE--LPSSIERLL-RLGYLDL  206 (312)
Q Consensus       135 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~--~p~~~--~~~L~~L~l~~~-~l~~--l~~~~~~l~-~L~~L~l  206 (312)
                      |++++|.+.+..+..+..+++|++|++++|..+..  ++...  .++|+.|++++| .++.  ++..+..++ +|++|++
T Consensus       123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l  202 (336)
T 2ast_B          123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL  202 (336)
T ss_dssp             EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred             EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence            99999987777777788899999999999855542  34322  579999999999 9985  677888999 9999999


Q ss_pred             CCCC--CC-CcCchhhhcCCCCCeEeccCCC-CCCcchhhhhCCCCCcEEeccCCC-Cc-ccchHhhccCCCcEEEecCC
Q 047461          207 SDCK--RL-KSLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQLSSPITFNLAKTN-IE-RIPESIIQLFVSGYLLLSYG  280 (312)
Q Consensus       207 ~~n~--~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n~-l~-~~~~~l~~~~~L~~L~l~~n  280 (312)
                      ++|.  +. +.++..+..+++|++|++++|. +.+..+..+..+++|+.|++++|. ++ .....+..+++|++|++++|
T Consensus       203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            9984  44 4566778889999999999998 666778888999999999999995 44 22235788999999999999


Q ss_pred             cCCcccccccc-CCCCchhH
Q 047461          281 IVEDTLRIQHT-NHTPAVRW  299 (312)
Q Consensus       281 ~~~~~~~~~~~-~~~~~~~~  299 (312)
                       +.+. .+..+ ..+|.+.+
T Consensus       283 -i~~~-~~~~l~~~l~~L~l  300 (336)
T 2ast_B          283 -VPDG-TLQLLKEALPHLQI  300 (336)
T ss_dssp             -SCTT-CHHHHHHHSTTSEE
T ss_pred             -cCHH-HHHHHHhhCcceEE
Confidence             5432 22222 23555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.78  E-value=4.2e-18  Score=144.86  Aligned_cols=147  Identities=24%  Similarity=0.224  Sum_probs=78.1

Q ss_pred             CcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecC
Q 047461          129 LNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLS  207 (312)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~  207 (312)
                      +++|++|++++|.+. .+++ +..+++|++|++++|. +..++... .++|+.|++++|.++.++ .+..+++|++|+++
T Consensus        67 l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~  142 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLG  142 (291)
T ss_dssp             CTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECC
T ss_pred             CCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEcc
Confidence            334444444444422 2222 4444444444444432 22233222 344555555555555542 34556666666666


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +|.+.+.  ..++.+++|+.|++++|.+.+..+  +..+++|+.|++++|.++.++. +..+++|+.|++++|++..
T Consensus       143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence            6665443  345666666666666665544333  5566666666666666665543 5666666666666666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=6e-18  Score=155.87  Aligned_cols=184  Identities=23%  Similarity=0.297  Sum_probs=95.6

Q ss_pred             CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEE
Q 047461           59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLN  136 (312)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~  136 (312)
                      ++++|+++++.+..+|... +++|++|++++|.++.+|   ..+++|+  +++.+.    +..++.   ++.  +|++|+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~----l~~ip~---l~~--~L~~L~  126 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNR----LSTLPE---LPA--SLKHLD  126 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC----CSCCCC---CCT--TCCEEE
T ss_pred             CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCC----CCCcch---hhc--CCCEEE
Confidence            5666666666655555433 255666666666655444   2223333  122111    111111   222  566666


Q ss_pred             cCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461          137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP  216 (312)
Q Consensus       137 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (312)
                      +++|.+.+ +|.   .+++|++|++++|. +..+|. ..++|+.|++++|.++.+|. ++  ++|+.|++++|.+. .+|
T Consensus       127 Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-l~~lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp  196 (571)
T 3cvr_A          127 VDNNQLTM-LPE---LPALLEYINADNNQ-LTMLPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLP  196 (571)
T ss_dssp             CCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCC
T ss_pred             CCCCcCCC-CCC---cCccccEEeCCCCc-cCcCCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chh
Confidence            66666333 554   45666666666643 333554 23566666666666666655 33  56666666666544 344


Q ss_pred             hhhhcCCCC-------CeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhcc
Q 047461          217 SSLYRLKSL-------GVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQL  269 (312)
Q Consensus       217 ~~l~~l~~L-------~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~  269 (312)
                      . +..  +|       +.|++++|.+. .+|..+..+++|+.|++++|.++ .+|..+..+
T Consensus       197 ~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          197 A-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             C-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             h-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            4 332  44       66666665543 45555555666666666666665 445544443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=3.8e-20  Score=163.90  Aligned_cols=160  Identities=14%  Similarity=0.052  Sum_probs=128.3

Q ss_pred             CcCCCcCCcEEEcCCCCcCc----cccccccCCCcCcEEeccCCCCCCC----CCcc-c-c---------CCCCeEEcCC
Q 047461          125 LMPRLNKLVTLNLRGSKSLK----SLPSGIFNLEFLTKLDLSGCSKLKR----LPEI-S-S---------GNISWLFLRG  185 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~l~~----~p~~-~-~---------~~L~~L~l~~  185 (312)
                      .+..+++|++|++++|.+..    .++..+..+++|++|++++|.....    ++.. . .         ++|+.|++++
T Consensus        89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~  168 (386)
T 2ca6_A           89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  168 (386)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence            34677899999999999766    3677788899999999999764211    1111 0 1         6999999999


Q ss_pred             cccc--cch---HHHHhcCCCCEEecCCCCCCC-----cCchhhhcCCCCCeEeccCCCCC----CcchhhhhCCCCCcE
Q 047461          186 IAIE--ELP---SSIERLLRLGYLDLSDCKRLK-----SLPSSLYRLKSLGVLSLCGCSNL----QRLPECLGQLSSPIT  251 (312)
Q Consensus       186 ~~l~--~l~---~~~~~l~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~~~~~----~~~p~~~~~l~~L~~  251 (312)
                      |.++  .++   ..+..+++|++|++++|.+..     ..+..+..+++|+.|++++|.+.    ..+|..+..+++|+.
T Consensus       169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~  248 (386)
T 2ca6_A          169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  248 (386)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCE
Confidence            9997  455   467789999999999998763     23336788999999999999875    668888999999999


Q ss_pred             EeccCCCCcc-----cchHhhc--cCCCcEEEecCCcCCc
Q 047461          252 FNLAKTNIER-----IPESIIQ--LFVSGYLLLSYGIVED  284 (312)
Q Consensus       252 L~l~~n~l~~-----~~~~l~~--~~~L~~L~l~~n~~~~  284 (312)
                      |++++|.++.     ++..+..  +++|++|++++|.+.+
T Consensus       249 L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          249 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             EECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence            9999999983     4566644  8999999999999987

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=2.8e-18  Score=137.53  Aligned_cols=155  Identities=16%  Similarity=0.178  Sum_probs=128.1

Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCccccc-chHHHHhcCCCC
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEE-LPSSIERLLRLG  202 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~-l~~~~~~l~~L~  202 (312)
                      ..+.+++|++|++++|. ...+| .+..+++|++|++++| .+..++... .++|+.|++++|.++. .+..++.+++|+
T Consensus        39 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           39 TEAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             BHHHHHTCCEEEEESSC-CSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             ChhhcCCccEEeccCCC-ccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            34567799999999998 44666 5888999999999997 555555444 5789999999999986 566788899999


Q ss_pred             EEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcC
Q 047461          203 YLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       203 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      +|++++|.+.+..+..++.+++|++|++++|...+.+| .+..+++|+.|++++|.++.++ .+..+++|++|++++|++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence            99999999888788889999999999999988566676 6889999999999999999876 688899999999999987


Q ss_pred             Cc
Q 047461          283 ED  284 (312)
Q Consensus       283 ~~  284 (312)
                      .+
T Consensus       194 ~~  195 (197)
T 4ezg_A          194 GG  195 (197)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.75  E-value=3.3e-18  Score=149.37  Aligned_cols=223  Identities=19%  Similarity=0.187  Sum_probs=162.0

Q ss_pred             ccCCCCCCCCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCccc-chh-hhcccCCCchhcchhhcccccccC-CCCC
Q 047461           50 SYLQDPGFAEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIK-RLW-DCVKHYSKLNQIIHAACHKLIAKI-PNPT  124 (312)
Q Consensus        50 ~~~~~~~~~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~-~~~-~~~~~l~~L~~l~~~~~~~~~~~~-~~~~  124 (312)
                      .+|..+ ..++++|++++|.++.++.. + .+++|++|++++|.+. .++ ..+..++++..+....... +..+ +.  
T Consensus        23 ~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-l~~l~~~--   98 (350)
T 4ay9_X           23 EIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-LLYINPE--   98 (350)
T ss_dssp             SCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-CCEECTT--
T ss_pred             ccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-ccccCch--
Confidence            344443 26799999999999998864 3 7899999999999875 455 3467777776432222222 2333 33  


Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc----cCCCCeEEcCCcccccchHHHHhcCC
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS----SGNISWLFLRGIAIEELPSSIERLLR  200 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~~l~~l~~~~~~l~~  200 (312)
                      .+..+++|++|++++|.+....+..+....++..+++.+++.+..++...    ...++.|++++|+++.++.......+
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~  178 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQ  178 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEE
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccc
Confidence            78889999999999998544434344566778889998877776665432    24678899999999999887666778


Q ss_pred             CCEEecCCCCCCCcCch-hhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC-CCcccchHhhccCCCcEEEec
Q 047461          201 LGYLDLSDCKRLKSLPS-SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT-NIERIPESIIQLFVSGYLLLS  278 (312)
Q Consensus       201 L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~l~~~~~L~~L~l~  278 (312)
                      |+++++.+++..+.+|. .++.+++|+.|++++|.+. .+|..  .+.+|+.|.+.++ .++.+|. +..+++|+.+++.
T Consensus       179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred             hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence            99999987666666664 5788999999999998754 45543  4667777777664 4667775 7789999999987


Q ss_pred             CC
Q 047461          279 YG  280 (312)
Q Consensus       279 ~n  280 (312)
                      ++
T Consensus       255 ~~  256 (350)
T 4ay9_X          255 YP  256 (350)
T ss_dssp             CH
T ss_pred             CC
Confidence            64

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.1e-17  Score=155.55  Aligned_cols=125  Identities=24%  Similarity=0.261  Sum_probs=55.5

Q ss_pred             CCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEec
Q 047461          128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDL  206 (312)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l  206 (312)
                      .+++|+.|++++|.+ ..++ .+..+++|+.|++++|. +..++... +++|+.|++++|.++.+ ..++.+++|+.|+|
T Consensus        85 ~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~L  160 (605)
T 1m9s_A           85 NLKNLGWLFLDENKI-KDLS-SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSL  160 (605)
T ss_dssp             GCTTCCEEECCSSCC-CCCT-TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEEC
T ss_pred             cCCCCCEEECcCCCC-CCCh-hhccCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEEC
Confidence            344555555555552 2222 34455555555555532 22233222 34444444444444444 23344444444444


Q ss_pred             CCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      ++|.+.+..|  +..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++
T Consensus       161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          161 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCSEEEE
T ss_pred             cCCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEccCCcCc
Confidence            4444433322  4444444444444443332 22 2444444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.74  E-value=2.5e-17  Score=137.10  Aligned_cols=165  Identities=17%  Similarity=0.135  Sum_probs=136.2

Q ss_pred             cccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCcc-c-cCCCCeEEcCCcccccchH-
Q 047461          117 IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEI-S-SGNISWLFLRGIAIEELPS-  193 (312)
Q Consensus       117 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~-~-~~~L~~L~l~~~~l~~l~~-  193 (312)
                      ...+|.  .+.  +.+++|++++|.+.+..+..+..+++|++|++++|......+.. . .++|+.|++++|.++.++. 
T Consensus        26 l~~~p~--~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  101 (251)
T 3m19_A           26 LDSVPS--GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLG  101 (251)
T ss_dssp             CSSCCS--CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred             ccccCC--CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChh
Confidence            344544  444  48999999999977776777889999999999996544333322 1 5799999999999998874 


Q ss_pred             HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCC
Q 047461          194 SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVS  272 (312)
Q Consensus       194 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L  272 (312)
                      .++.+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++. .+..+++|
T Consensus       102 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          102 VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence            46789999999999999887666667889999999999998877666678999999999999999996664 68889999


Q ss_pred             cEEEecCCcCCcc
Q 047461          273 GYLLLSYGIVEDT  285 (312)
Q Consensus       273 ~~L~l~~n~~~~~  285 (312)
                      ++|++++|++...
T Consensus       182 ~~L~l~~N~~~c~  194 (251)
T 3m19_A          182 QTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSCCBCTT
T ss_pred             CEEEeeCCceeCC
Confidence            9999999998654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=2.8e-19  Score=156.92  Aligned_cols=239  Identities=14%  Similarity=0.039  Sum_probs=141.6

Q ss_pred             cchhcCCCCCcEEEeeccccccccccccccCCCCCC-C-CccEEeeCCCCCCCCCCcc--Cc-----CCccEEeCCCCcc
Q 047461           22 SNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-A-EVKYLHWHGYPLKSLPSNL--SA-----EKLMLLEVPDSDI   92 (312)
Q Consensus        22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~-~L~~L~l~~~~~~~~~~~~--~l-----~~L~~L~l~~~~~   92 (312)
                      +..+...++|++|++++|.+.+...  ..+...+.. + +|++|++++|.+.......  .+     ++|++|++++|.+
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~--~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSIST--VELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCH--HHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHH--HHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            3445555568899998877533311  111122333 4 7888888888876654321  22     7888888888887


Q ss_pred             cchh-hhcccCCCchhcchhhcccccccCCCCCCcCCC-cCCcEEEcCCCCcCcccccc----ccC-CCcCcEEeccCCC
Q 047461           93 KRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRL-NKLVTLNLRGSKSLKSLPSG----IFN-LEFLTKLDLSGCS  165 (312)
Q Consensus        93 ~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~----l~~-~~~L~~L~l~~~~  165 (312)
                      +... ..+..                       .+..+ ++|++|++++|.+....+..    +.. .++|++|++++|.
T Consensus        93 ~~~~~~~l~~-----------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  149 (362)
T 3goz_A           93 SYKSSDELVK-----------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND  149 (362)
T ss_dssp             GGSCHHHHHH-----------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC
T ss_pred             ChHHHHHHHH-----------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc
Confidence            6432 11110                       12222 46777888777754433322    223 2577788887754


Q ss_pred             CCCCC----Cccc--c-CCCCeEEcCCcccccch-----HHHHhc-CCCCEEecCCCCCCCc----CchhhhcC-CCCCe
Q 047461          166 KLKRL----PEIS--S-GNISWLFLRGIAIEELP-----SSIERL-LRLGYLDLSDCKRLKS----LPSSLYRL-KSLGV  227 (312)
Q Consensus       166 ~l~~~----p~~~--~-~~L~~L~l~~~~l~~l~-----~~~~~l-~~L~~L~l~~n~~~~~----~~~~l~~l-~~L~~  227 (312)
                      ....-    +...  . ++|+.|++++|.++...     ..+..+ ++|++|++++|.+.+.    ++..+... ++|++
T Consensus       150 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~  229 (362)
T 3goz_A          150 LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVS  229 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCE
T ss_pred             CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceE
Confidence            32211    1110  1 37888888888776433     234444 4788888888876552    44455553 47888


Q ss_pred             EeccCCCCCCcch----hhhhCCCCCcEEeccCCCCccc--------chHhhccCCCcEEEecCCcCCcc
Q 047461          228 LSLCGCSNLQRLP----ECLGQLSSPITFNLAKTNIERI--------PESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       228 L~l~~~~~~~~~p----~~~~~l~~L~~L~l~~n~l~~~--------~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      |++++|.+.+..+    ..+..+++|+.|++++|.+..+        +..+..+++|++|++++|++.+.
T Consensus       230 L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          230 LNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             EECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             EECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            8888887765433    3345667888888888874322        22345667788888888887654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.74  E-value=2.9e-18  Score=147.29  Aligned_cols=218  Identities=16%  Similarity=0.054  Sum_probs=154.9

Q ss_pred             CcCCccEEeCCCCcccc--hhh--hcccCCCchhcchhhcccccccCCCCCCc--CCCcCCcEEEcCCCCcCcccc----
Q 047461           78 SAEKLMLLEVPDSDIKR--LWD--CVKHYSKLNQIIHAACHKLIAKIPNPTLM--PRLNKLVTLNLRGSKSLKSLP----  147 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~--~~~--~~~~l~~L~~l~~~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~----  147 (312)
                      ....++.+.+.++.+..  +..  ....+++|+.|...... +....+.  .+  +.+++|++|++++|.+.+..+    
T Consensus        62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~--~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~  138 (310)
T 4glp_A           62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPP--LPLEATGLALSSLRLRNVSWATGRSWLAE  138 (310)
T ss_dssp             SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCC--CSSSCCCBCCSSCEEESCCCSSTTSSHHH
T ss_pred             hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhh--hhhhccCCCCCEEEeecccccchhhhhHH
Confidence            34457788888777652  211  12244567744443321 1233444  55  789999999999999766544    


Q ss_pred             ccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCccccc---chH--HHHhcCCCCEEecCCCCCCCcCch---
Q 047461          148 SGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEE---LPS--SIERLLRLGYLDLSDCKRLKSLPS---  217 (312)
Q Consensus       148 ~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~---l~~--~~~~l~~L~~L~l~~n~~~~~~~~---  217 (312)
                      ..+..+++|++|++++|......+...  .++|++|++++|.+..   ++.  .++.+++|++|++++|++.. ++.   
T Consensus       139 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~  217 (310)
T 4glp_A          139 LQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCA  217 (310)
T ss_dssp             HHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHH
T ss_pred             HHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHH
Confidence            234578999999999976544333332  5789999999998764   332  23678999999999998753 233   


Q ss_pred             -hhhcCCCCCeEeccCCCCCCcchhhhhCC---CCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccccccccCC
Q 047461          218 -SLYRLKSLGVLSLCGCSNLQRLPECLGQL---SSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNH  293 (312)
Q Consensus       218 -~l~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~  293 (312)
                       .++.+++|++|++++|.+.+..|..+..+   ++|++|++++|.++.+|..+.  ++|++|++++|++.+.....   .
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~---~  292 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPD---E  292 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTT---S
T ss_pred             HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhh---h
Confidence             25688999999999999888878777666   699999999999998888764  89999999999998754343   4


Q ss_pred             CCchhHHHhhh
Q 047461          294 TPAVRWQEIWQ  304 (312)
Q Consensus       294 ~~~~~~~~~~~  304 (312)
                      +|.++.++...
T Consensus       293 l~~L~~L~L~~  303 (310)
T 4glp_A          293 LPEVDNLTLDG  303 (310)
T ss_dssp             CCCCSCEECSS
T ss_pred             CCCccEEECcC
Confidence            55555544433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.74  E-value=1.1e-17  Score=138.23  Aligned_cols=192  Identities=14%  Similarity=0.080  Sum_probs=127.8

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCC-CCCCCCc-c-CcCCccEEeCCC-CcccchhhhcccCC
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYP-LKSLPSN-L-SAEKLMLLEVPD-SDIKRLWDCVKHYS  103 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-~~~~~~~-~-~l~~L~~L~l~~-~~~~~~~~~~~~l~  103 (312)
                      ++|++|+++++.+.+      ..+..+.. ++|++|++++|. +..++.. + .+++|++|++++ |.++.++..     
T Consensus        31 ~~l~~L~l~~n~l~~------i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~-----   99 (239)
T 2xwt_C           31 PSTQTLKLIETHLRT------IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD-----   99 (239)
T ss_dssp             TTCCEEEEESCCCSE------ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT-----
T ss_pred             CcccEEEEeCCcceE------ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH-----
Confidence            489999999987521      11234545 899999999997 8888763 3 889999999998 888765421     


Q ss_pred             CchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc---EEeccCCCCCCCCCccc---cCC
Q 047461          104 KLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT---KLDLSGCSKLKRLPEIS---SGN  177 (312)
Q Consensus       104 ~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~l~~~p~~~---~~~  177 (312)
                                           .+..+++|++|++++|.+ ..+|. +..+++|+   +|++++|..+..+|...   .++
T Consensus       100 ---------------------~f~~l~~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~  156 (239)
T 2xwt_C          100 ---------------------ALKELPLLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCN  156 (239)
T ss_dssp             ---------------------SEECCTTCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBS
T ss_pred             ---------------------HhCCCCCCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhc
Confidence                                 344455666666666653 33454 55555555   66666653444444321   346


Q ss_pred             CC-eEEcCCcccccchHHHHhcCCCCEEecCCCC-CCCcCchhhhcC-CCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461          178 IS-WLFLRGIAIEELPSSIERLLRLGYLDLSDCK-RLKSLPSSLYRL-KSLGVLSLCGCSNLQRLPECLGQLSSPITFNL  254 (312)
Q Consensus       178 L~-~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  254 (312)
                      |+ .+++++|.++.+|......++|++|++++|+ +.+..+..+..+ ++|+.|++++|.+. .+|..  .+++|+.|++
T Consensus       157 L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l  233 (239)
T 2xwt_C          157 ETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIA  233 (239)
T ss_dssp             SEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEEC
T ss_pred             ceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeec
Confidence            66 7777777777666543333678888888884 555545567777 78888888887664 45544  6678888888


Q ss_pred             cCC
Q 047461          255 AKT  257 (312)
Q Consensus       255 ~~n  257 (312)
                      +++
T Consensus       234 ~~~  236 (239)
T 2xwt_C          234 RNT  236 (239)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.74  E-value=1.2e-18  Score=162.56  Aligned_cols=238  Identities=11%  Similarity=-0.039  Sum_probs=149.8

Q ss_pred             CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccc--hhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461           58 AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKR--LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT  134 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  134 (312)
                      ++|+.+.+.++....++..+ .+++|++|++++|.+..  +...+..+++|+.|.....-. ...++.  ....+++|++
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~-~~~l~~--~~~~~~~L~~  346 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG-DRGLEV--LAQYCKQLKR  346 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGH-HHHHHH--HHHHCTTCCE
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccC-HHHHHH--HHHhCCCCCE
Confidence            55666666655444455444 56788888888877552  223356777777443321100 111221  2345678888


Q ss_pred             EEcCC----------C-CcCcc-ccccccCCCcCcEEeccCCCCCCCCC-cc--ccCCCCeEEcC----Cccccc-----
Q 047461          135 LNLRG----------S-KSLKS-LPSGIFNLEFLTKLDLSGCSKLKRLP-EI--SSGNISWLFLR----GIAIEE-----  190 (312)
Q Consensus       135 L~l~~----------~-~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~~p-~~--~~~~L~~L~l~----~~~l~~-----  190 (312)
                      |++++          + .+... ++.....+++|++|+++.+......+ ..  ..++|+.|++.    .+.+++     
T Consensus       347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            88883          3 32222 22223357888888886533222111 11  13678999985    556765     


Q ss_pred             -chHHHHhcCCCCEEecCCCC--CCCcCchhhh-cCCCCCeEeccCCCCCC-cchhhhhCCCCCcEEeccCCCCc--ccc
Q 047461          191 -LPSSIERLLRLGYLDLSDCK--RLKSLPSSLY-RLKSLGVLSLCGCSNLQ-RLPECLGQLSSPITFNLAKTNIE--RIP  263 (312)
Q Consensus       191 -l~~~~~~l~~L~~L~l~~n~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~l~--~~~  263 (312)
                       ++..+..+++|++|++++|.  +.+..+..++ .+++|+.|++++|.+.+ .++..+..+++|+.|++++|.++  .++
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  506 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIA  506 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHH
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHH
Confidence             44456778999999997654  4443333343 47889999999988775 45666788999999999999987  355


Q ss_pred             hHhhccCCCcEEEecCCcCCccccccccCCCCchh
Q 047461          264 ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVR  298 (312)
Q Consensus       264 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  298 (312)
                      ..+..+++|++|++++|++++.........+|.+.
T Consensus       507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~  541 (592)
T 3ogk_B          507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN  541 (592)
T ss_dssp             HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred             HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence            66678999999999999987643332223456544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=2.2e-19  Score=167.57  Aligned_cols=256  Identities=14%  Similarity=0.048  Sum_probs=132.1

Q ss_pred             cCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCC-----Ccc-CcCCccEEeCCCCcccchhhh
Q 047461           26 TKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLP-----SNL-SAEKLMLLEVPDSDIKRLWDC   98 (312)
Q Consensus        26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~-----~~~-~l~~L~~L~l~~~~~~~~~~~   98 (312)
                      .++++|++|++++|.+.+.+.  ..+...... ++|++|+++++.+..+.     ..+ .+++|++|++++|.+..++..
T Consensus       161 ~~~~~L~~L~L~~~~~~~~~~--~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~  238 (592)
T 3ogk_B          161 THCRKIKTLLMEESSFSEKDG--KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF  238 (592)
T ss_dssp             HHCTTCSEEECTTCEEECCCS--HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred             hhCCCCCEEECccccccCcch--hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence            367788888888765422210  001111112 67888888888765332     122 578888999988888777777


Q ss_pred             cccCCCchhcchhhcccc-------------------------cccCCCCCCcCCCcCCcEEEcCCCCcCcccc-ccccC
Q 047461           99 VKHYSKLNQIIHAACHKL-------------------------IAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP-SGIFN  152 (312)
Q Consensus        99 ~~~l~~L~~l~~~~~~~~-------------------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~  152 (312)
                      +..+++|+.+........                         ...++.  .+..+++|++|++++|.+..... ..+..
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~  316 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI--LFPFAAQIRKLDLLYALLETEDHCTLIQK  316 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG--GGGGGGGCCEEEETTCCCCHHHHHHHHTT
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH--HHhhcCCCcEEecCCCcCCHHHHHHHHHh
Confidence            777777775544321110                         011111  33445566666666665322111 11223


Q ss_pred             CCcCcEEeccC----------------------------------CCCCCC--CCccc--cCCCCeEEcCCccccc-chH
Q 047461          153 LEFLTKLDLSG----------------------------------CSKLKR--LPEIS--SGNISWLFLRGIAIEE-LPS  193 (312)
Q Consensus       153 ~~~L~~L~l~~----------------------------------~~~l~~--~p~~~--~~~L~~L~l~~~~l~~-l~~  193 (312)
                      +++|+.|+++.                                  |+.+..  ++...  .++|+.|++..+.++. .+.
T Consensus       317 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~  396 (592)
T 3ogk_B          317 CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLE  396 (592)
T ss_dssp             CTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHH
T ss_pred             CcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHH
Confidence            33444433331                                  111111  00000  2344444444344432 112


Q ss_pred             HHH-hcCCCCEEecC----CCCCCCc-----CchhhhcCCCCCeEeccCCC--CCCcchhhhh-CCCCCcEEeccCCCCc
Q 047461          194 SIE-RLLRLGYLDLS----DCKRLKS-----LPSSLYRLKSLGVLSLCGCS--NLQRLPECLG-QLSSPITFNLAKTNIE  260 (312)
Q Consensus       194 ~~~-~l~~L~~L~l~----~n~~~~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~p~~~~-~l~~L~~L~l~~n~l~  260 (312)
                      .++ .+++|++|+++    .+.+.+.     ++..+..+++|+.|+++.|.  +.+..+..+. .+++|+.|++++|.++
T Consensus       397 ~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~  476 (592)
T 3ogk_B          397 SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGES  476 (592)
T ss_dssp             HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSS
T ss_pred             HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCC
Confidence            222 25555555554    2222221     22234456666666665443  3333333333 3677888888888887


Q ss_pred             --ccchHhhccCCCcEEEecCCcCCcc
Q 047461          261 --RIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       261 --~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                        .++..+..+++|++|++++|++.+.
T Consensus       477 ~~~~~~~~~~~~~L~~L~l~~n~l~~~  503 (592)
T 3ogk_B          477 DEGLMEFSRGCPNLQKLEMRGCCFSER  503 (592)
T ss_dssp             HHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred             HHHHHHHHhcCcccCeeeccCCCCcHH
Confidence              4555667788888888888887543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=2.7e-16  Score=144.92  Aligned_cols=192  Identities=18%  Similarity=0.220  Sum_probs=149.6

Q ss_pred             hhcCCC-----CCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhh
Q 047461           24 TFTKMP-----KLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDC   98 (312)
Q Consensus        24 ~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~   98 (312)
                      .|..++     +++.|+++++.+.+       ++..+. ++|++|++++|.+..+|  ..+++|++|++++|.++.+|. 
T Consensus        49 ~~~~l~~C~~~~L~~L~Ls~n~L~~-------lp~~l~-~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-  117 (571)
T 3cvr_A           49 AVSLLKECLINQFSELQLNRLNLSS-------LPDNLP-PQITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-  117 (571)
T ss_dssp             HHHHHHHHHHTTCSEEECCSSCCSC-------CCSCCC-TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-
T ss_pred             hhhhccccccCCccEEEeCCCCCCc-------cCHhHc-CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-
Confidence            355554     89999999977522       333332 78999999999999888  457899999999999998877 


Q ss_pred             cccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccC
Q 047461           99 VKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSG  176 (312)
Q Consensus        99 ~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~  176 (312)
                      +..  +|+  +++.+.    +..+|.     .+++|++|++++|.+. .+|.   .+++|++|++++|. +..+|... +
T Consensus       118 l~~--~L~~L~Ls~N~----l~~lp~-----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~l~-~  180 (571)
T 3cvr_A          118 LPA--SLKHLDVDNNQ----LTMLPE-----LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPELP-E  180 (571)
T ss_dssp             CCT--TCCEEECCSSC----CSCCCC-----CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCCCC-T
T ss_pred             hhc--CCCEEECCCCc----CCCCCC-----cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcchhh-C
Confidence            544  777  444444    333432     5779999999999954 4776   67899999999965 55577744 8


Q ss_pred             CCCeEEcCCcccccchHHHHhcCCC-------CEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCC
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRL-------GYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLS  247 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~  247 (312)
                      +|+.|++++|.++.+|. +..  +|       +.|++++|.+. .+|..++.+++|+.|++++|.+.+..|..+..+.
T Consensus       181 ~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          181 SLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             TCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             CCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence            99999999999999887 443  67       99999999875 5788888899999999999999999998877653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.70  E-value=4.4e-18  Score=149.31  Aligned_cols=201  Identities=17%  Similarity=0.136  Sum_probs=143.1

Q ss_pred             CCccEEeeCCCCCCCCCC-----cc-CcC-CccEEeCCCCcccchh-hhcccCCCchhcchhhcccccccCCCCCCcCC-
Q 047461           58 AEVKYLHWHGYPLKSLPS-----NL-SAE-KLMLLEVPDSDIKRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPR-  128 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~-----~~-~l~-~L~~L~l~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~-  128 (312)
                      .+|++|++++|.+...+.     .+ .++ +|++|++++|.++... ..+..                       .+.. 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~-----------------------~l~~~   78 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ-----------------------ILAAI   78 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHH-----------------------HHHTS
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHH-----------------------HHhcc
Confidence            458888888887776653     22 566 7888888887776432 11110                       1112 


Q ss_pred             CcCCcEEEcCCCCcCcccccc----ccCC-CcCcEEeccCCCCCCCCCccc--------cCCCCeEEcCCcccc-----c
Q 047461          129 LNKLVTLNLRGSKSLKSLPSG----IFNL-EFLTKLDLSGCSKLKRLPEIS--------SGNISWLFLRGIAIE-----E  190 (312)
Q Consensus       129 l~~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~l~~~p~~~--------~~~L~~L~l~~~~l~-----~  190 (312)
                      .++|++|++++|.+....+..    +..+ ++|++|++++|. ++..+...        ..+|++|++++|.++     .
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  157 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE  157 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence            258999999999965554443    3344 899999999976 34333211        258999999999998     3


Q ss_pred             chHHHHhcC-CCCEEecCCCCCCCcCchh----hhcC-CCCCeEeccCCCCCCc----chhhhhC-CCCCcEEeccCCCC
Q 047461          191 LPSSIERLL-RLGYLDLSDCKRLKSLPSS----LYRL-KSLGVLSLCGCSNLQR----LPECLGQ-LSSPITFNLAKTNI  259 (312)
Q Consensus       191 l~~~~~~l~-~L~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~----~p~~~~~-l~~L~~L~l~~n~l  259 (312)
                      ++..+..++ +|++|++++|.+.+..+..    +... ++|++|++++|.+.+.    ++..+.. .++|+.|++++|.+
T Consensus       158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred             HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence            556666666 9999999999987766643    3445 5999999999987653    5666666 45999999999999


Q ss_pred             cccch-----HhhccCCCcEEEecCCcC
Q 047461          260 ERIPE-----SIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       260 ~~~~~-----~l~~~~~L~~L~l~~n~~  282 (312)
                      +..+.     .+..+++|++|++++|.+
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l  265 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDIV  265 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHHH
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCCc
Confidence            85432     346789999999999984

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=6.1e-16  Score=131.47  Aligned_cols=163  Identities=25%  Similarity=0.268  Sum_probs=133.9

Q ss_pred             cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEE
Q 047461          126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYL  204 (312)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L  204 (312)
                      ...+++|++|++++|. ...++. +..+++|++|++++|. +..++... .++|+.|++++|.++.++. ++.+++|++|
T Consensus        42 ~~~l~~L~~L~l~~~~-i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           42 QNELNSIDQIIANNSD-IKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHHHTCCEEECTTSC-CCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             hhhcCcccEEEccCCC-cccChh-HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence            4567899999999998 455554 7789999999999965 45555443 6899999999999999875 8889999999


Q ss_pred             ecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          205 DLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       205 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      ++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+
T Consensus       118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB
T ss_pred             ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCC
Confidence            9999987663  4588999999999999887654  578899999999999999997766 8899999999999999987


Q ss_pred             cccccccCCCCchhHH
Q 047461          285 TLRIQHTNHTPAVRWQ  300 (312)
Q Consensus       285 ~~~~~~~~~~~~~~~~  300 (312)
                      ...+.   .++.++.+
T Consensus       193 l~~l~---~l~~L~~L  205 (291)
T 1h6t_A          193 LRALA---GLKNLDVL  205 (291)
T ss_dssp             CGGGT---TCTTCSEE
T ss_pred             Chhhc---cCCCCCEE
Confidence            55444   45555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=1.9e-16  Score=129.84  Aligned_cols=151  Identities=22%  Similarity=0.217  Sum_probs=126.7

Q ss_pred             CCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHH-HHhcCCCCEEecC
Q 047461          131 KLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERLLRLGYLDLS  207 (312)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~  207 (312)
                      .-+.++.+++. .+.+|..+  .++|++|++++|...+..|...  .++|+.|++++|.++.+|.. ++.+++|++|+++
T Consensus        20 s~~~v~c~~~~-l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls   96 (229)
T 3e6j_A           20 SGTTVDCRSKR-HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG   96 (229)
T ss_dssp             ETTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             eCCEeEccCCC-cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence            46789998877 77788755  4899999999966444334322  57899999999999998854 6889999999999


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCCcc
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      +|++.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|++...
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            99988776777889999999999998765 788889999999999999999997764 578899999999999988653

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.69  E-value=2.9e-16  Score=127.91  Aligned_cols=148  Identities=17%  Similarity=0.135  Sum_probs=95.5

Q ss_pred             cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCC-Cc--c-ccCCCCeEEcCCcccccchH-HHHhcCCCCEEecC
Q 047461          133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL-PE--I-SSGNISWLFLRGIAIEELPS-SIERLLRLGYLDLS  207 (312)
Q Consensus       133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-p~--~-~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~  207 (312)
                      +.++++++. .+.+|..+  .+.+++|++++|. +..+ +.  . ..++|+.|++++|.++.++. .++.+++|++|+++
T Consensus        14 ~~l~~s~n~-l~~iP~~~--~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   89 (220)
T 2v70_A           14 TTVDCSNQK-LNKIPEHI--PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT   89 (220)
T ss_dssp             TEEECCSSC-CSSCCSCC--CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEeEeCCCC-cccCccCC--CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence            456666655 34455433  2345666666643 3322 21  1 13566677777777766554 46667777777777


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCc
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|++..
T Consensus        90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            7777666666677777777777777777666677777777777777777777754 5567777777777777777654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.69  E-value=4.9e-16  Score=144.51  Aligned_cols=168  Identities=20%  Similarity=0.225  Sum_probs=92.5

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL  137 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  137 (312)
                      .+|++|+++++.+..++....+++|+.|++++|.+..++. +..+++|+.|......  +..++   .++.+++|++|++
T Consensus        43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~~l~---~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK--IKDLS---SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CCCCT---TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC--CCCCh---hhccCCCCCEEEe
Confidence            4455555555555444443345555555555555544433 4445555522221110  11122   4556667777777


Q ss_pred             CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP  216 (312)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (312)
                      ++|.+. .++ .+..+++|+.|++++|. +..++... +++|+.|++++|.++.++. +..+++|+.|+|++|.+.+ ++
T Consensus       117 s~N~l~-~l~-~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~-l~  191 (605)
T 1m9s_A          117 EHNGIS-DIN-GLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISD-LR  191 (605)
T ss_dssp             TTSCCC-CCG-GGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCB-CG
T ss_pred             cCCCCC-CCc-cccCCCccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCC-Ch
Confidence            777643 333 35667777777777743 33334333 4567777777777776655 6667777777777766544 23


Q ss_pred             hhhhcCCCCCeEeccCCCCCC
Q 047461          217 SSLYRLKSLGVLSLCGCSNLQ  237 (312)
Q Consensus       217 ~~l~~l~~L~~L~l~~~~~~~  237 (312)
                       .+..+++|+.|++++|.+.+
T Consensus       192 -~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          192 -ALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             -GGTTCTTCSEEECCSEEEEC
T ss_pred             -HHccCCCCCEEEccCCcCcC
Confidence             36667777777777665543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.68  E-value=5e-16  Score=125.38  Aligned_cols=134  Identities=22%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             CCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCCCE
Q 047461          128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRLGY  203 (312)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~  203 (312)
                      .+++|++|++++|.+.+..+..+..+++|++|++++|. +..++...   .++|++|++++|.++.++.. ++.+++|++
T Consensus        50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  128 (208)
T 2o6s_A           50 ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD  128 (208)
T ss_dssp             TCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence            34445555555554322222223344444555444432 22222110   23344444444444433322 344455555


Q ss_pred             EecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhcc
Q 047461          204 LDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQL  269 (312)
Q Consensus       204 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~  269 (312)
                      |++++|.+.+..+..+..+++|+.|++++|.+..       .+++|+.|+++.|.++ .+|+.++.+
T Consensus       129 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          129 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             EECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence            5555555444333334445555555555543322       2334445555555554 444444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=1.7e-16  Score=132.95  Aligned_cols=169  Identities=22%  Similarity=0.198  Sum_probs=100.4

Q ss_pred             CccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcC
Q 047461           59 EVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLR  138 (312)
Q Consensus        59 ~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~  138 (312)
                      ++..++++++.+..++....+++|++|++++|.++.++                            .++.+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~----------------------------~l~~l~~L~~L~L~   71 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA----------------------------GMQFFTNLKELHLS   71 (263)
T ss_dssp             HHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT----------------------------TGGGCTTCCEEECC
T ss_pred             HHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch----------------------------HHhhCCCCCEEECC
Confidence            34444555555555543335556666666665554332                            23344566777777


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchh
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSS  218 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~  218 (312)
                      +|.+ ..+++ +..+++|++|++++|. +..+|.....+|+.|++++|.++.++ .++.+++|++|++++|++.+. + .
T Consensus        72 ~N~i-~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~  145 (263)
T 1xeu_A           72 HNQI-SDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-M  145 (263)
T ss_dssp             SSCC-CCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-G
T ss_pred             CCcc-CCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-H
Confidence            7663 33333 5666777777777643 33344333356777777777776664 366677777777777765443 3 4


Q ss_pred             hhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc
Q 047461          219 LYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP  263 (312)
Q Consensus       219 l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  263 (312)
                      ++.+++|+.|++++|.+.+.  ..+..+++|+.|++++|+++..|
T Consensus       146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCc
Confidence            66677777777777666554  45666777777777777766433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.68  E-value=2.5e-16  Score=128.31  Aligned_cols=149  Identities=20%  Similarity=0.172  Sum_probs=124.9

Q ss_pred             CcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecC
Q 047461          132 LVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLS  207 (312)
Q Consensus       132 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~  207 (312)
                      -+.++.+++. ...+|..+.  ++++.|++++|. +..++...   .++|+.|++++|.++.+ |..+..+++|++|+++
T Consensus        13 ~~~v~c~~~~-l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKG-LTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSC-CSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCC-cCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            3678888877 667777553  789999999964 44444321   47899999999999987 6678899999999999


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecCCcCCc
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +|.+....+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++. .+..+++|++|++++|++.-
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            999876655667889999999999999888888899999999999999999997665 58889999999999998854

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=3.8e-16  Score=127.23  Aligned_cols=154  Identities=17%  Similarity=0.120  Sum_probs=129.0

Q ss_pred             CcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchH--HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCC
Q 047461          156 LTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPS--SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC  233 (312)
Q Consensus       156 L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  233 (312)
                      -+.+++++ +.+..+|......++.|++++|.++.++.  .++.+++|++|++++|++.+..+..+..+++|++|++++|
T Consensus        13 ~~~l~~s~-n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           13 GTTVDCSN-QKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TTEEECCS-SCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEeCC-CCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            35888888 45666776555788999999999998843  4788999999999999988877778999999999999999


Q ss_pred             CCCCcchhhhhCCCCCcEEeccCCCCccc-chHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461          234 SNLQRLPECLGQLSSPITFNLAKTNIERI-PESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       234 ~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      .+.+..+..+..+++|+.|++++|.++.+ |..+..+++|++|++++|.+.+..+ ..+..++.++.++...+.|.+.|
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEECSG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCcCCC
Confidence            99888888899999999999999999965 6778899999999999999987433 44556777777777777777666

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=1.7e-15  Score=124.23  Aligned_cols=129  Identities=25%  Similarity=0.170  Sum_probs=112.1

Q ss_pred             cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCCCEEe
Q 047461          130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRLGYLD  205 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~  205 (312)
                      ++|++|++++|.+.+..|..+..+++|++|++++|. +..+|...   .++|+.|++++|.++.++.. +..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            689999999999777778888899999999999965 56665432   57899999999999998764 67899999999


Q ss_pred             cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      +++|++. .+|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       119 Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          119 MCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            9999876 67888899999999999999887666677889999999999999987

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=9.6e-16  Score=124.85  Aligned_cols=131  Identities=23%  Similarity=0.213  Sum_probs=111.9

Q ss_pred             cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHH-HHhcCCCCEEec
Q 047461          130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSS-IERLLRLGYLDL  206 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l  206 (312)
                      +++++|++++|.+.+..+..+..+++|++|++++|......|...  .++|+.|++++|.++.+|.. +..+++|++|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            589999999999655555578889999999999965433223322  57899999999999998865 578999999999


Q ss_pred             CCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      ++|++.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            999998888888999999999999999988777778889999999999999986

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=5.7e-16  Score=123.99  Aligned_cols=146  Identities=19%  Similarity=0.172  Sum_probs=123.6

Q ss_pred             cCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEe
Q 047461          151 FNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLS  229 (312)
Q Consensus       151 ~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  229 (312)
                      ..+++|+.|++++| .+..+|... .++|+.|++++|.++.++ .+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            46888999999995 455666544 689999999999888775 577899999999999998887788899999999999


Q ss_pred             ccCCCCCCcchhhhhCCCCCcEEeccCCC-CcccchHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHh
Q 047461          230 LCGCSNLQRLPECLGQLSSPITFNLAKTN-IERIPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEI  302 (312)
Q Consensus       230 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~  302 (312)
                      +++|.+.+..|..+..+++|+.|++++|. ++.+| .+..+++|++|++++|++.+...+.   .+|.++.++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~---~l~~L~~L~l  188 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE---DFPKLNQLYA  188 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGG---GCSSCCEEEE
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhc---cCCCCCEEEe
Confidence            99999988889999999999999999998 88876 6889999999999999998855555   4555554443

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=2.9e-16  Score=137.65  Aligned_cols=152  Identities=18%  Similarity=0.126  Sum_probs=115.1

Q ss_pred             CCcEEEcCCCCcCcccccccc-CCCcCcEEeccCCCCCCCCCcc-c--cCCCCeEEcCCcccccchH-HHHhcCCCCEEe
Q 047461          131 KLVTLNLRGSKSLKSLPSGIF-NLEFLTKLDLSGCSKLKRLPEI-S--SGNISWLFLRGIAIEELPS-SIERLLRLGYLD  205 (312)
Q Consensus       131 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~p~~-~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~  205 (312)
                      .++.|++++|.+.+..+..+. .+++|++|++++|. +..++.. .  .++|+.|++++|.++.++. .+..+++|++|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            588999999985554455555 78999999999854 4444422 1  4688999999999888765 467888999999


Q ss_pred             cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhh---hCCCCCcEEeccCCCCcccc-hHhhccCC--CcEEEecC
Q 047461          206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECL---GQLSSPITFNLAKTNIERIP-ESIIQLFV--SGYLLLSY  279 (312)
Q Consensus       206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~---~~l~~L~~L~l~~n~l~~~~-~~l~~~~~--L~~L~l~~  279 (312)
                      +++|++.+..+..+..+++|+.|++++|.+.+-.+..+   ..+++|+.|++++|.|+.+| ..+..++.  ++.|++++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            99998887777788888999999999887665333333   56888999999999998776 45667776  47889999


Q ss_pred             CcCC
Q 047461          280 GIVE  283 (312)
Q Consensus       280 n~~~  283 (312)
                      |++.
T Consensus       199 N~~~  202 (361)
T 2xot_A          199 NPLE  202 (361)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            8875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=2.5e-15  Score=131.64  Aligned_cols=173  Identities=22%  Similarity=0.203  Sum_probs=124.6

Q ss_pred             ccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcC-CCcCCcEEEcC
Q 047461           60 VKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMP-RLNKLVTLNLR  138 (312)
Q Consensus        60 L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~-~l~~L~~L~l~  138 (312)
                      -+.++.+++.+..+|..+ ...++.|++++|.++.++..                          .+. .+++|++|+++
T Consensus        20 ~~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~--------------------------~~~~~l~~L~~L~L~   72 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAE--------------------------WTPTRLTNLHSLLLS   72 (361)
T ss_dssp             TTEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTT--------------------------SSSSCCTTCCEEECC
T ss_pred             CCEEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChh--------------------------hhhhcccccCEEECC
Confidence            356777777787777643 34578888888887754322                          233 56677888888


Q ss_pred             CCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCc
Q 047461          139 GSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKS  214 (312)
Q Consensus       139 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~  214 (312)
                      +|.+.+..+..+..+++|++|++++|. +..++...   ..+|+.|++++|.++.+ +..+..+++|++|++++|++.+.
T Consensus        73 ~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l  151 (361)
T 2xot_A           73 HNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRF  151 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCee
Confidence            877554444567777888888888754 44333321   46788888888888876 45688899999999999987664


Q ss_pred             Cchhh---hcCCCCCeEeccCCCCCCcchhhhhCCCC--CcEEeccCCCCc
Q 047461          215 LPSSL---YRLKSLGVLSLCGCSNLQRLPECLGQLSS--PITFNLAKTNIE  260 (312)
Q Consensus       215 ~~~~l---~~l~~L~~L~l~~~~~~~~~p~~~~~l~~--L~~L~l~~n~l~  260 (312)
                      -+..+   ..+++|+.|++++|.+.+-.+..+..++.  ++.|++++|++.
T Consensus       152 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            44444   56899999999999887666677778876  488999999987

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.64  E-value=1.1e-15  Score=123.29  Aligned_cols=151  Identities=19%  Similarity=0.135  Sum_probs=111.5

Q ss_pred             cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCCCEEe
Q 047461          130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRLGYLD  205 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~  205 (312)
                      ++|++|++++|.+.+..+..+..+++|++|++++|. +..++...   .++|++|++++|.++.++.. ++.+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            478999999988654444456788999999999854 44454421   46788888888888877654 56788888888


Q ss_pred             cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCcc
Q 047461          206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      +++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.      +.+++|++|++..|.+.+.
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~~~g~  180 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGV  180 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHHCTTT
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHhCCce
Confidence            8888877665666777888888888887776655555777888888888888665      3456777888888877765


Q ss_pred             cc
Q 047461          286 LR  287 (312)
Q Consensus       286 ~~  287 (312)
                      .+
T Consensus       181 ip  182 (208)
T 2o6s_A          181 VR  182 (208)
T ss_dssp             BB
T ss_pred             ee
Confidence            55

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=6.6e-18  Score=156.12  Aligned_cols=190  Identities=17%  Similarity=0.146  Sum_probs=118.3

Q ss_pred             CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCc
Q 047461           78 SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLT  157 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  157 (312)
                      ..++|+.|++++|.++.+|..+..+++|+.|....... ...++.        .+..     +...+..|..+..+++|+
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~-l~~l~~--------ll~~-----~~~~~~~~~~l~~l~~L~  412 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWC-LLTIIL--------LMRA-----LDPLLYEKETLQYFSTLK  412 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHH--------HHHH-----HCTGGGHHHHHHHHHHHH
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchh-hhhHHH--------HHHh-----cccccCCHHHHHHHHhcc
Confidence            56788889999999988888888888888554322100 000000        0000     011223333344444444


Q ss_pred             EEe-ccCCCCCCCCC----------ccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCC
Q 047461          158 KLD-LSGCSKLKRLP----------EISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG  226 (312)
Q Consensus       158 ~L~-l~~~~~l~~~p----------~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  226 (312)
                      .|+ ++.+ .+..++          ......|+.|++++|.++++|. ++.+++|+.|++++|.+. .+|..++.+++|+
T Consensus       413 ~L~~l~~n-~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~  489 (567)
T 1dce_A          413 AVDPMRAA-YLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE  489 (567)
T ss_dssp             HHCGGGHH-HHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred             cCcchhhc-ccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence            444 2221 111111          1112357777777777777776 777778888888877765 6677777888888


Q ss_pred             eEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc--chHhhccCCCcEEEecCCcCCccc
Q 047461          227 VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI--PESIIQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       227 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~--~~~l~~~~~L~~L~l~~n~~~~~~  286 (312)
                      .|++++|.+.+ +| .++.+++|+.|++++|.++.+  |..++.+++|+.|++++|++.+.+
T Consensus       490 ~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          490 VLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             EEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             EEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            88888776655 66 677778888888888888755  677777888888888888776643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=1.4e-15  Score=132.73  Aligned_cols=215  Identities=20%  Similarity=0.252  Sum_probs=156.3

Q ss_pred             cEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhh-hcccCCCchh--cchhhcccccccCCCCCCcCCCcCCcEE-E
Q 047461           61 KYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWD-CVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRLNKLVTL-N  136 (312)
Q Consensus        61 ~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l~~L~~L-~  136 (312)
                      ++++-+++.++.+|..+ .+++++|++++|.++.++. .+..+++|+.  |+.+..   ...++. ..+.+++++.++ .
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i---~~~i~~-~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV---LEVIEA-DVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT---CCEECT-TSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC---CCccCh-hHhhcchhhhhhhc
Confidence            45666777788888754 4689999999999999985 5789999994  554442   122322 257788887764 5


Q ss_pred             cCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCC-cccccchHH-HHhc-CCCCEEecCCCC
Q 047461          137 LRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRG-IAIEELPSS-IERL-LRLGYLDLSDCK  210 (312)
Q Consensus       137 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~-~~l~~l~~~-~~~l-~~L~~L~l~~n~  210 (312)
                      +..|.+....|..+..+++|++|++++|. +..+|...   ..++..+++.+ +.++.++.. +..+ ..++.|++++|+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSC
T ss_pred             ccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccc
Confidence            55677555456678889999999999954 45455433   34566777755 577777643 4444 468999999998


Q ss_pred             CCCcCchhhhcCCCCCeEeccCCCCCCcchh-hhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +.. ++...+..++|+++++.+++..+.+|. .|..+++|+.|++++|+|+.+|.  ..+.+|+.|.+.++.-.+
T Consensus       166 i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          166 IQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLK  237 (350)
T ss_dssp             CCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCC
T ss_pred             ccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcC
Confidence            754 555556677899999998777777775 57899999999999999999887  346778888877765433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=1.9e-15  Score=126.52  Aligned_cols=151  Identities=21%  Similarity=0.188  Sum_probs=126.0

Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCE
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGY  203 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~  203 (312)
                      .+..+++|++|++++|. ...++ .+..+++|++|++++|. +..++... .++|+.|++++|.++++|....  ++|++
T Consensus        36 ~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~  110 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSN-IQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSR  110 (263)
T ss_dssp             CHHHHTTCSEEECTTSC-CCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred             chhhcCcCcEEECcCCC-cccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence            35567899999999998 55666 58889999999999964 55566544 6799999999999998876433  89999


Q ss_pred             EecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461          204 LDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       204 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                      |++++|++.+ ++ .++.+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|++.
T Consensus       111 L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          111 LFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             EECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEE
T ss_pred             EEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCccc
Confidence            9999998766 34 48899999999999988755 44 688999999999999999977 66889999999999999986


Q ss_pred             cc
Q 047461          284 DT  285 (312)
Q Consensus       284 ~~  285 (312)
                      ..
T Consensus       186 ~~  187 (263)
T 1xeu_A          186 NE  187 (263)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.62  E-value=2.5e-15  Score=119.71  Aligned_cols=124  Identities=23%  Similarity=0.265  Sum_probs=67.2

Q ss_pred             cEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCc---cc-cCCCCeEEcCCcccccc-hHHHHhcCCCCEEecC
Q 047461          133 VTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPE---IS-SGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLS  207 (312)
Q Consensus       133 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~---~~-~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~  207 (312)
                      ++++++++. .+.+|..+.  .++++|++++|. +..++.   .. .++|+.|++++|.++.+ |..++.+++|++|+++
T Consensus        11 ~~l~~s~~~-l~~ip~~~~--~~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRG-LKEIPRDIP--LHTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSC-CSSCCSCCC--TTCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCC-cCcCccCCC--CCCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            667777776 456665442  266666666643 333332   11 34555555555555554 3345555555555555


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      +|++.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            55555544444555555555555555555555555555555555555555554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.61  E-value=6.4e-17  Score=150.88  Aligned_cols=123  Identities=12%  Similarity=0.027  Sum_probs=72.3

Q ss_pred             CCCCeEEcCCcccccc-hHHH-HhcCCCCEEecC--C---CCCCCcC------chhhhcCCCCCeEeccCCCCCCcchhh
Q 047461          176 GNISWLFLRGIAIEEL-PSSI-ERLLRLGYLDLS--D---CKRLKSL------PSSLYRLKSLGVLSLCGCSNLQRLPEC  242 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l-~~~~-~~l~~L~~L~l~--~---n~~~~~~------~~~l~~l~~L~~L~l~~~~~~~~~p~~  242 (312)
                      ++|+.|.+..+.++.. ...+ ..+++|++|+++  +   |...+..      +..+..+++|+.|++++ .+.+..+..
T Consensus       372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~  450 (594)
T 2p1m_B          372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY  450 (594)
T ss_dssp             TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred             hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence            3455554444444421 1122 346777777777  2   2222221      22255667788888866 555555555


Q ss_pred             hhC-CCCCcEEeccCCCCc-c-cchHhhccCCCcEEEecCCcCCccccccccCCCCchhH
Q 047461          243 LGQ-LSSPITFNLAKTNIE-R-IPESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRW  299 (312)
Q Consensus       243 ~~~-l~~L~~L~l~~n~l~-~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~  299 (312)
                      +.. +++|+.|++++|.++ . ++.....+++|++|++++|++.+.........++.++.
T Consensus       451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~  510 (594)
T 2p1m_B          451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS  510 (594)
T ss_dssp             HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred             HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence            554 788999999999887 2 32333678999999999999854333323333454443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=9.1e-15  Score=116.53  Aligned_cols=108  Identities=19%  Similarity=0.195  Sum_probs=80.2

Q ss_pred             CCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461          176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA  255 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  255 (312)
                      .+++.|++++|.++.+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|+++
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~  110 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH  110 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence            46666667777777777667777788888888877776666667777888888888777766666677777888888888


Q ss_pred             CCCCcccch-HhhccCCCcEEEecCCcCC
Q 047461          256 KTNIERIPE-SIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       256 ~n~l~~~~~-~l~~~~~L~~L~l~~n~~~  283 (312)
                      +|.++.+|. .+..+++|+.|++++|++.
T Consensus       111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          111 GNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             SSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            888876665 4667778888888887764

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.59  E-value=2e-17  Score=152.94  Aligned_cols=170  Identities=19%  Similarity=0.135  Sum_probs=121.3

Q ss_pred             CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCC-------------CCCCCCccc--cCCCCeEE-cCCccccc
Q 047461          127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS-------------KLKRLPEIS--SGNISWLF-LRGIAIEE  190 (312)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------------~l~~~p~~~--~~~L~~L~-l~~~~l~~  190 (312)
                      ..++.|+.|++++|. .+.+|.+++.+++|+.|++++|.             ..+..|...  .++|+.|+ +..+.+..
T Consensus       346 ~~~~~L~~L~Ls~n~-L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHH-HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhh-HHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            556788889999887 56788888888888888886542             122222111  34666776 55555444


Q ss_pred             chH------HHHh--cCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc
Q 047461          191 LPS------SIER--LLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI  262 (312)
Q Consensus       191 l~~------~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~  262 (312)
                      ++.      .+..  ...|+.|++++|.+.+ +|. ++.+++|+.|++++|.+. .+|..++.+++|+.|++++|.++.+
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence            332      1111  2368999999988765 666 889999999999998776 8888999999999999999999988


Q ss_pred             chHhhccCCCcEEEecCCcCCccccccccCCCCchhHHH
Q 047461          263 PESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQE  301 (312)
Q Consensus       263 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~  301 (312)
                      | .++.+++|+.|++++|.+.+......+..++.++.++
T Consensus       502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            7 7889999999999999987753122333455554443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=1.6e-14  Score=112.46  Aligned_cols=133  Identities=20%  Similarity=0.135  Sum_probs=92.3

Q ss_pred             CcCCcEEEcCCCCcC-ccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecC
Q 047461          129 LNKLVTLNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLS  207 (312)
Q Consensus       129 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~  207 (312)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|. +..++                      .++.+++|++|+++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~----------------------~~~~l~~L~~L~Ls   79 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVS----------------------NLPKLPKLKKLELS   79 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCS----------------------SCCCCSSCCEEEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChh----------------------hhccCCCCCEEECc
Confidence            358999999999865 4778777788888888888864 33221                      23345667777777


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEeccCCCCcccch----HhhccCCCcEEEecCCcC
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNLAKTNIERIPE----SIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~n~~  282 (312)
                      +|.+.+.+|..+..+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.+|.    .+..+++|++|++++|.+
T Consensus        80 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A           80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             SCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             CCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            7776665666666677777777777665442 22566777777788887777776655    667778888888888766


Q ss_pred             Cc
Q 047461          283 ED  284 (312)
Q Consensus       283 ~~  284 (312)
                      ..
T Consensus       160 ~~  161 (168)
T 2ell_A          160 QE  161 (168)
T ss_dssp             CB
T ss_pred             hh
Confidence            44

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.59  E-value=3e-17  Score=153.14  Aligned_cols=202  Identities=13%  Similarity=0.034  Sum_probs=127.2

Q ss_pred             CcCCccEEeCCCCcccc--hhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCC---------CCcCccc
Q 047461           78 SAEKLMLLEVPDSDIKR--LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRG---------SKSLKSL  146 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~---------~~~~~~~  146 (312)
                      .+++|++|++++|.++.  +...+..+++|+.|....+.. ...++.  ....+++|++|++++         +.+....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-~~~l~~--l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~  363 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIE-DAGLEV--LASTCKDLRELRVFPSEPFVMEPNVALTEQG  363 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGH-HHHHHH--HHHHCTTCCEEEEECSCTTCSSCSSCCCHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccC-HHHHHH--HHHhCCCCCEEEEecCcccccccCCCCCHHH
Confidence            35678888888777552  223345677777544433210 111111  223467888888843         2222211


Q ss_pred             cccc-cCCCcCcEEeccCCCCCCCCC--cc--ccCCCCeEEcC--C----ccccc------chHHHHhcCCCCEEecCCC
Q 047461          147 PSGI-FNLEFLTKLDLSGCSKLKRLP--EI--SSGNISWLFLR--G----IAIEE------LPSSIERLLRLGYLDLSDC  209 (312)
Q Consensus       147 ~~~l-~~~~~L~~L~l~~~~~l~~~p--~~--~~~~L~~L~l~--~----~~l~~------l~~~~~~l~~L~~L~l~~n  209 (312)
                      ...+ ..+++|+.|.++.+. +....  ..  ..++|+.|++.  +    +.++.      ++..+..+++|++|++++ 
T Consensus       364 l~~l~~~~~~L~~L~~~~~~-l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-  441 (594)
T 2p1m_B          364 LVSVSMGCPKLESVLYFCRQ-MTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-  441 (594)
T ss_dssp             HHHHHHHCTTCCEEEEEESC-CCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred             HHHHHHhchhHHHHHHhcCC-cCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence            1112 236788888666533 33211  11  14689999998  4    45663      334467789999999987 


Q ss_pred             CCCCcCchhhhc-CCCCCeEeccCCCCCCcchhhh-hCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCCcCCc
Q 047461          210 KRLKSLPSSLYR-LKSLGVLSLCGCSNLQRLPECL-GQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       210 ~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      .+.+..+..++. +++|+.|++++|.+.+..+..+ ..+++|+.|++++|.++  .+...+..+++|++|++++|++..
T Consensus       442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  520 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF  520 (594)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred             cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence            555544445555 8899999999998766555554 67899999999999997  233345678999999999998843

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.58  E-value=7e-15  Score=112.12  Aligned_cols=128  Identities=21%  Similarity=0.145  Sum_probs=88.4

Q ss_pred             CcCCcEEEcCCCCcC-ccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecC
Q 047461          129 LNKLVTLNLRGSKSL-KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLS  207 (312)
Q Consensus       129 l~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~  207 (312)
                      .+++++|++++|.+. +.+|..+..+++|++|++++|. +..                     + ..++.+++|++|+++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~---------------------~-~~~~~l~~L~~L~Ls   72 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTS---------------------I-ANLPKLNKLKKLELS   72 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCC---------------------C-TTCCCCTTCCEEECC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCC---------------------c-hhhhcCCCCCEEECC
Confidence            357899999998865 4777767777888888877753 222                     2 223445667777777


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEeccCCCCcccch----HhhccCCCcEEEecC
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNLAKTNIERIPE----SIIQLFVSGYLLLSY  279 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~l~~  279 (312)
                      +|.+.+.+|..++.+++|++|++++|.+.+. .+..+..+++|+.|++++|.++.++.    .+..+++|++|++++
T Consensus        73 ~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             SSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            7776666666666677777777777765542 34667777888888888888775554    567788888877653

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=7.4e-15  Score=114.34  Aligned_cols=125  Identities=18%  Similarity=0.158  Sum_probs=103.7

Q ss_pred             CCCCeEEcCCcccc--cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEe
Q 047461          176 GNISWLFLRGIAIE--ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFN  253 (312)
Q Consensus       176 ~~L~~L~l~~~~l~--~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~  253 (312)
                      ++++.|++++|.++  .+|..+..+++|++|++++|.+.+.  ..++.+++|+.|++++|.+.+.+|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            57888888888887  7777778899999999999987665  6688999999999999998888888888899999999


Q ss_pred             ccCCCCcccc--hHhhccCCCcEEEecCCcCCcccc--ccccCCCCchhHHHh
Q 047461          254 LAKTNIERIP--ESIIQLFVSGYLLLSYGIVEDTLR--IQHTNHTPAVRWQEI  302 (312)
Q Consensus       254 l~~n~l~~~~--~~l~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~~~  302 (312)
                      +++|.++.+|  ..+..+++|++|++++|++.+...  ...+..+|.++.++.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence            9999999766  678999999999999999987544  123445666655443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=4.8e-14  Score=107.42  Aligned_cols=128  Identities=20%  Similarity=0.166  Sum_probs=82.0

Q ss_pred             CCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeE
Q 047461          102 YSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWL  181 (312)
Q Consensus       102 l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L  181 (312)
                      .++++.+....+.-....++.  .++.+++|++|++++|.+.+.  ..+..+++|++|++++|.                
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~----------------   75 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEG--LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNR----------------   75 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCS--CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSC----------------
T ss_pred             CccCeEEEccCCcCChhHHHH--HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCc----------------
Confidence            456664444332210125665  778899999999999985444  556667777777777643                


Q ss_pred             EcCCccccc-chHHHHhcCCCCEEecCCCCCCCc-CchhhhcCCCCCeEeccCCCCCCcch---hhhhCCCCCcEEecc
Q 047461          182 FLRGIAIEE-LPSSIERLLRLGYLDLSDCKRLKS-LPSSLYRLKSLGVLSLCGCSNLQRLP---ECLGQLSSPITFNLA  255 (312)
Q Consensus       182 ~l~~~~l~~-l~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~L~l~  255 (312)
                            +++ +|..++.+++|++|++++|.+.+. .+..++.+++|++|++++|.+.+..+   ..+..+++|+.|+++
T Consensus        76 ------i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           76 ------VSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ------CCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ------ccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence                  333 455555677777777777766552 23556777777777777776554433   456677777777765

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=3.4e-14  Score=111.51  Aligned_cols=133  Identities=18%  Similarity=0.100  Sum_probs=87.3

Q ss_pred             cCCCcCCcEEEcCCCCcCccccccccCCC-cCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEE
Q 047461          126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLE-FLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYL  204 (312)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L  204 (312)
                      +..+++|++|++++|.+. .++. +..+. +|++|++++                      |.++++ ..++.+++|++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~----------------------N~l~~~-~~l~~l~~L~~L   69 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSD----------------------NEIRKL-DGFPLLRRLKTL   69 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCS----------------------SCCCEE-CCCCCCSSCCEE
T ss_pred             cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCC----------------------CCCCcc-cccccCCCCCEE
Confidence            445567777777777633 3433 33332 555555555                      444443 234556677777


Q ss_pred             ecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchh--hhhCCCCCcEEeccCCCCcccchH----hhccCCCcEEEec
Q 047461          205 DLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE--CLGQLSSPITFNLAKTNIERIPES----IIQLFVSGYLLLS  278 (312)
Q Consensus       205 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~l~~~~~~----l~~~~~L~~L~l~  278 (312)
                      ++++|.+.+..+..+..+++|++|++++|.+ +.+|.  .+..+++|+.|++++|.++.+|..    +..+++|++|+++
T Consensus        70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           70 LVNNNRICRIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             ECCSSCCCEECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ECCCCcccccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence            7777776554334446777788888877765 44554  677788888888888888877764    7788888888888


Q ss_pred             CCcCCc
Q 047461          279 YGIVED  284 (312)
Q Consensus       279 ~n~~~~  284 (312)
                      +|....
T Consensus       149 ~n~~~~  154 (176)
T 1a9n_A          149 KVKLKE  154 (176)
T ss_dssp             ECCHHH
T ss_pred             cCCHHH
Confidence            887644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=1.2e-13  Score=108.31  Aligned_cols=108  Identities=17%  Similarity=0.174  Sum_probs=65.0

Q ss_pred             CCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461          177 NISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA  255 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  255 (312)
                      +++.|++++|.++.++. .++.+++|++|++++|++.+..+..++.+++|+.|++++|.+.+..+..+..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  108 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD  108 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence            44444444444444443 23556666666766666555444445666667777776666655555555666677777777


Q ss_pred             CCCCcccchH-hhccCCCcEEEecCCcCCc
Q 047461          256 KTNIERIPES-IIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       256 ~n~l~~~~~~-l~~~~~L~~L~l~~n~~~~  284 (312)
                      +|.++.+|.. +..+++|++|++++|++.+
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            7776655543 3556677777777776654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.50  E-value=2.5e-14  Score=136.05  Aligned_cols=139  Identities=22%  Similarity=0.242  Sum_probs=93.8

Q ss_pred             ccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCC
Q 047461          146 LPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLK  223 (312)
Q Consensus       146 ~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~  223 (312)
                      .+..+..++.|+.|++++|. +..+|...  ..+|+.|+|++|.++.+|..++.+++|++|+|++|.+. .+|..++.++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~  293 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF  293 (727)
T ss_dssp             ------CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred             ChhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence            34556677788888888854 34555433  46788888888888888877778888888888887765 6677778888


Q ss_pred             CCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCC-CcEEEecCCcCCcccc
Q 047461          224 SLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFV-SGYLLLSYGIVEDTLR  287 (312)
Q Consensus       224 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~-L~~L~l~~n~~~~~~~  287 (312)
                      +|++|++++|.+ +.+|..+..+++|+.|++++|.++ .+|..+..... +..+++++|.+.+..+
T Consensus       294 ~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          294 QLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             TCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             CCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            888888887765 467777778888888888888887 44555543322 2246677777765443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.49  E-value=1.6e-14  Score=137.45  Aligned_cols=147  Identities=23%  Similarity=0.293  Sum_probs=113.9

Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCC
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLG  202 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~  202 (312)
                      .+..++.|+.|++++|.+ ..+|..+..+++|++|++++|. +..+|...  ..+|+.|+|++|.++.+|..++.+++|+
T Consensus       219 ~~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  296 (727)
T 4b8c_D          219 SKYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK  296 (727)
T ss_dssp             ---CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCS
T ss_pred             hhccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCC
Confidence            677889999999999994 5788878899999999999965 45777543  6899999999999999999999999999


Q ss_pred             EEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCC-CcEEeccCCCCc-ccchHhhccCCCcEEEecCC
Q 047461          203 YLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSS-PITFNLAKTNIE-RIPESIIQLFVSGYLLLSYG  280 (312)
Q Consensus       203 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n  280 (312)
                      +|+|++|.+ +.+|..++.+++|+.|++++|.+.+.+|..+..+.. +..+++++|.++ .+|.      .|+.|+++.|
T Consensus       297 ~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n  369 (727)
T 4b8c_D          297 YFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD  369 (727)
T ss_dssp             EEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred             EEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence            999999986 478888999999999999999999988887755421 234678889888 5544      4556666666

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.49  E-value=9.2e-14  Score=110.66  Aligned_cols=130  Identities=16%  Similarity=0.110  Sum_probs=109.2

Q ss_pred             CCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461          178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT  257 (312)
Q Consensus       178 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n  257 (312)
                      -+.+++++++++.+|..+  .+++++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..|.++++|+.|++++|
T Consensus        12 ~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            467888888888888654  358999999999875 67788999999999999999988877888999999999999999


Q ss_pred             CCcccc-hHhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461          258 NIERIP-ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       258 ~l~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      .++.++ ..+..+++|++|+|++|.+.. .+...+..++.++.++...++|.+.|
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~C~c  142 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPLYCDC  142 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCeecCC
Confidence            999665 468899999999999999875 34444567788887777888888776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.48  E-value=2.8e-13  Score=107.76  Aligned_cols=130  Identities=21%  Similarity=0.158  Sum_probs=107.3

Q ss_pred             cEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHH--HHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCC
Q 047461          157 TKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSS--IERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS  234 (312)
Q Consensus       157 ~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~--~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~  234 (312)
                      +.+++++ +.++.+|.....+++.|++++|.++.++..  ++.+++|++|++++|++.+..|..++.+++|++|++++|.
T Consensus        11 ~~l~~s~-~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTG-RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTT-SCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCC-CCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            6788888 455677765556899999999999887753  7888999999999998888888888889999999999988


Q ss_pred             CCCcchhhhhCCCCCcEEeccCCCCcc-cchHhhccCCCcEEEecCCcCCcccc
Q 047461          235 NLQRLPECLGQLSSPITFNLAKTNIER-IPESIIQLFVSGYLLLSYGIVEDTLR  287 (312)
Q Consensus       235 ~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~l~~~~~L~~L~l~~n~~~~~~~  287 (312)
                      +.+..+..+..+++|+.|++++|.++. .|..+..+++|++|++++|++...-+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            877777778888999999999999984 46778888999999999998875433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=2.5e-15  Score=120.36  Aligned_cols=133  Identities=19%  Similarity=0.063  Sum_probs=97.6

Q ss_pred             cccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCC
Q 047461          147 PSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSL  225 (312)
Q Consensus       147 ~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  225 (312)
                      |..+..+++|++|++++|. +..+|... .++|+.|++++|.++.+|..+..+++|++|++++|++.+ +| .+..+++|
T Consensus        41 ~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L  117 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL  117 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred             hHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence            3367778888888888753 44466333 578888888888888888777777889999999887665 44 57788889


Q ss_pred             CeEeccCCCCCCcc-hhhhhCCCCCcEEeccCCCCccc-ch----------HhhccCCCcEEEecCCcCCc
Q 047461          226 GVLSLCGCSNLQRL-PECLGQLSSPITFNLAKTNIERI-PE----------SIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       226 ~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~-~~----------~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +.|++++|.+.+.. ...+..+++|+.|++++|.++.. |.          .+..+++|+.|+  ++++..
T Consensus       118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999888765422 24678889999999999988633 22          367889999886  555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.42  E-value=4.8e-13  Score=104.88  Aligned_cols=109  Identities=17%  Similarity=0.083  Sum_probs=88.5

Q ss_pred             CCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461          176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA  255 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  255 (312)
                      .+++.|++++|.++.++......++|++|++++|.+.+.  ..++.+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus        19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~   96 (176)
T 1a9n_A           19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILT   96 (176)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECC
T ss_pred             CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECC
Confidence            467777777777777654333344999999999987764  568889999999999998765444556899999999999


Q ss_pred             CCCCcccch--HhhccCCCcEEEecCCcCCccc
Q 047461          256 KTNIERIPE--SIIQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       256 ~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~~  286 (312)
                      +|.++.+|.  .+..+++|+.|++++|++....
T Consensus        97 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~  129 (176)
T 1a9n_A           97 NNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  129 (176)
T ss_dssp             SCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             CCcCCcchhhHhhhcCCCCCEEEecCCCCCCcH
Confidence            999998887  7889999999999999987543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=8.6e-13  Score=102.82  Aligned_cols=104  Identities=18%  Similarity=0.136  Sum_probs=53.7

Q ss_pred             CCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCC
Q 047461          178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKT  257 (312)
Q Consensus       178 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n  257 (312)
                      .+.+++++++++++|..+  .+++++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            344555555555554332  245555555555555544555555555555555555544433444455555555555555


Q ss_pred             CCcccch-HhhccCCCcEEEecCCcCC
Q 047461          258 NIERIPE-SIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       258 ~l~~~~~-~l~~~~~L~~L~l~~n~~~  283 (312)
                      .++.+|. .+..+++|++|+|++|++.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           89 QLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            5554443 3455555555555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.40  E-value=9e-13  Score=103.36  Aligned_cols=132  Identities=14%  Similarity=0.112  Sum_probs=104.2

Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      ..+.+++.+++++.+|..+  .++|++|++++|++.+..+..++.+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus         8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            4577888888888887543  36899999999998776666778999999999999988766666788999999999999


Q ss_pred             CCCcccch-HhhccCCCcEEEecCCcCCccccccccCCCCchhHHHhhhcceeeec
Q 047461          257 TNIERIPE-SIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQEIWQEVWLNVC  311 (312)
Q Consensus       257 n~l~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (312)
                      |.++.+|. .+..+++|++|++++|.+.+ .+...+..++.++.++...+.|.+.|
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCeeccC
Confidence            99997765 46889999999999999875 33344455666666655555554443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.39  E-value=1.3e-12  Score=102.27  Aligned_cols=103  Identities=18%  Similarity=0.176  Sum_probs=47.5

Q ss_pred             cEEeccCCCCCCCCCccccCCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCC
Q 047461          157 TKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSN  235 (312)
Q Consensus       157 ~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~  235 (312)
                      +.+++++ +.++.+|.....+++.|++++|.++++ |..++.+++|++|++++|++.+..+..+..+++|++|++++|.+
T Consensus        15 ~~l~~~~-n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cEEEeCC-CCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc
Confidence            4455554 233444433234455555555555544 23344455555555555544443333334455555555555444


Q ss_pred             CCcchhhhhCCCCCcEEeccCCCCc
Q 047461          236 LQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       236 ~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      .+-.+..+..+++|+.|++++|++.
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ceeCHHHhccccCCCEEEeCCCCcc
Confidence            3333333444555555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.31  E-value=1.1e-11  Score=107.02  Aligned_cols=256  Identities=14%  Similarity=0.108  Sum_probs=145.8

Q ss_pred             CCCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCC--CCCccCcCCccEEeCCCCcccchhhhccc----
Q 047461           28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKS--LPSNLSAEKLMLLEVPDSDIKRLWDCVKH----  101 (312)
Q Consensus        28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----  101 (312)
                      +.+++.|.+.+..- ..   ........ .++|++|++++|.+..  .+.. .++.+..+.+..+.+.  ...+..    
T Consensus        24 ~~~l~~L~l~g~i~-~~---~~~~l~~~-l~~L~~LdLs~n~i~~~~~~~~-~~~~~~~~~~~~~~I~--~~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKLN-AE---DFRHLRDE-FPSLKVLDISNAEIKMYSGKAG-TYPNGKFYIYMANFVP--AYAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEEC-HH---HHHHHHHS-CTTCCEEEEEEEEECCEEESSS-SSGGGCCEEECTTEEC--TTTTEEEETT
T ss_pred             hCceeEEEEecccc-HH---HHHHHHHh-hccCeEEecCcceeEEecCccc-cccccccccccccccC--HHHhcccccc
Confidence            45788888886421 00   00000000 2679999999988762  2211 2222344444444332  134556    


Q ss_pred             ----CCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCC---CCCCCCccc
Q 047461          102 ----YSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCS---KLKRLPEIS  174 (312)
Q Consensus       102 ----l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---~l~~~p~~~  174 (312)
                          +++|+.+....  . +..++. ..|..+++|+.|++..|......+.++....++..+......   ....+....
T Consensus        96 ~~~g~~~L~~l~L~~--~-i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~  171 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE--K-IKNIED-AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFA  171 (329)
T ss_dssp             EEEECTTCCC-CBCT--T-CCEECT-TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSC
T ss_pred             cccccCCCcEEECCc--c-ccchhH-HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccc
Confidence                88888655443  1 222322 267889999999999887544444456566666666544311   001111000


Q ss_pred             ---c--------------------------CCCCeEEcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCC
Q 047461          175 ---S--------------------------GNISWLFLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKS  224 (312)
Q Consensus       175 ---~--------------------------~~L~~L~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  224 (312)
                         .                          .+++.+.+.++-.. .+......+++|+.+++.+|++...-+.+|..+++
T Consensus       172 f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~  251 (329)
T 3sb4_A          172 FIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKY  251 (329)
T ss_dssp             EEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred             cccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCC
Confidence               1                          12222322222111 11111224788999999988776666667888889


Q ss_pred             CCeEeccCCCCCCcchhhhhCCCCCc-EEeccCCCCcccc-hHhhccCCCcEEEecCCcCCccccccccCCCCchh
Q 047461          225 LGVLSLCGCSNLQRLPECLGQLSSPI-TFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVR  298 (312)
Q Consensus       225 L~~L~l~~~~~~~~~p~~~~~l~~L~-~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~  298 (312)
                      |+.+++.++ +..--+..|.++.+|+ .+++.. .++.++ .++..|++|+.+++++|.+.. .....+.+++.++
T Consensus       252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~  324 (329)
T 3sb4_A          252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT-LGDELFGNGVPSK  324 (329)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCC
T ss_pred             CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc-cchhhhcCCcchh
Confidence            999999875 4433455678888898 999987 677554 578889999999998887754 3333444555554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=6e-14  Score=112.26  Aligned_cols=107  Identities=17%  Similarity=0.073  Sum_probs=94.3

Q ss_pred             cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461          175 SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNL  254 (312)
Q Consensus       175 ~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  254 (312)
                      .++|++|++++|.++.+| .++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+ +| .+..+++|+.|++
T Consensus        47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEE
T ss_pred             CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEEC
Confidence            479999999999999998 8889999999999999865 677777788999999999987765 55 6888999999999


Q ss_pred             cCCCCcccch--HhhccCCCcEEEecCCcCCcc
Q 047461          255 AKTNIERIPE--SIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       255 ~~n~l~~~~~--~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      ++|.++.++.  .+..+++|++|++++|++.+.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence            9999997664  788999999999999998665

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.28  E-value=2.6e-11  Score=94.37  Aligned_cols=85  Identities=22%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             CCCCeEEcCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461          176 GNISWLFLRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNL  254 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  254 (312)
                      .+++.|++++|.++.+ |..++.+++|++|++++|++.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            4666666666777766 445778889999999999887766666788999999999998877666667888999999999


Q ss_pred             cCCCCc
Q 047461          255 AKTNIE  260 (312)
Q Consensus       255 ~~n~l~  260 (312)
                      ++|+++
T Consensus       110 ~~N~~~  115 (170)
T 3g39_A          110 LNNPWD  115 (170)
T ss_dssp             CSSCBC
T ss_pred             CCCCCC
Confidence            999887

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.27  E-value=3.5e-11  Score=93.99  Aligned_cols=106  Identities=15%  Similarity=0.129  Sum_probs=80.3

Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      .-+.+++++++++.+|..+.  ++|++|++++|++.+..|..++.+++|+.|++++|.+.+-.+..+..+++|+.|++++
T Consensus        13 ~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             CSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            44678888888888776543  6788888888887777777778888888888888776654445567788888888888


Q ss_pred             CCCcccchH-hhccCCCcEEEecCCcCCc
Q 047461          257 TNIERIPES-IIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       257 n~l~~~~~~-l~~~~~L~~L~l~~n~~~~  284 (312)
                      |.|+.+|.. +..+++|++|++++|++..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            888876654 7778888888888887753

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.22  E-value=4.1e-12  Score=111.43  Aligned_cols=155  Identities=17%  Similarity=0.066  Sum_probs=99.5

Q ss_pred             cCCcEEEcCCCCcCcccc----cccc-CCCcCcEEeccCCCCCCC-CCccc--cCCCCeEEcCCcccccch-----HHH-
Q 047461          130 NKLVTLNLRGSKSLKSLP----SGIF-NLEFLTKLDLSGCSKLKR-LPEIS--SGNISWLFLRGIAIEELP-----SSI-  195 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~----~~l~-~~~~L~~L~l~~~~~l~~-~p~~~--~~~L~~L~l~~~~l~~l~-----~~~-  195 (312)
                      +.|++|++++|.+.....    ..+. ..++|+.|++++|..... .....  ..+++.|++++|.++...     ..+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            367888888887543322    2222 236788888888643211 11111  247888888888877432     222 


Q ss_pred             HhcCCCCEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCcc-----c
Q 047461          196 ERLLRLGYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIER-----I  262 (312)
Q Consensus       196 ~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~-----~  262 (312)
                      ...++|++|++++|.+..    .++..+...++|++|++++|.+.+.    ++..+...++|+.|++++|.|+.     +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            235678888888887644    2444556777888888888876542    35566677788888888888872     3


Q ss_pred             chHhhccCCCcEEEecCCcCCc
Q 047461          263 PESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       263 ~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +..+...++|++|+|++|.+.+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHHhCCCCCEEeccCCCCCH
Confidence            3445567888888888888754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=7.7e-11  Score=102.39  Aligned_cols=101  Identities=16%  Similarity=0.054  Sum_probs=50.0

Q ss_pred             EcCCc-ccccchHHHHhcCCCCEEecCC-CCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCC
Q 047461          182 FLRGI-AIEELPSSIERLLRLGYLDLSD-CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNI  259 (312)
Q Consensus       182 ~l~~~-~l~~l~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l  259 (312)
                      +.+++ +++.+|. ++.+.+|++|+|++ |.+.+..+..++.+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.|
T Consensus        14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            44444 4445555 44455555555553 444444444455555555555555554444444555555555555555555


Q ss_pred             cccchHhhccCCCcEEEecCCcCC
Q 047461          260 ERIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       260 ~~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                      +.+|..+.....|+.|+|.+|++.
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeCHHHcccCCceEEEeeCCCcc
Confidence            544433222222555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.06  E-value=6.2e-09  Score=92.07  Aligned_cols=212  Identities=11%  Similarity=0.068  Sum_probs=117.3

Q ss_pred             CCccEEeeCCCCCCCCCCcc-CcCCccEEeCCCCcccchh-hhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461           58 AEVKYLHWHGYPLKSLPSNL-SAEKLMLLEVPDSDIKRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL  135 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  135 (312)
                      .+|+.+.+..+ +..++... .-..|+.+.+.. .+..+. ..+..|++|+.+.....  -+..++. ..+. +++|+.+
T Consensus       135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n--~l~~I~~-~aF~-~~~L~~l  208 (401)
T 4fdw_A          135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT--KITKLPA-STFV-YAGIEEV  208 (401)
T ss_dssp             CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS--CCSEECT-TTTT-TCCCSEE
T ss_pred             CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCC--cceEech-hhEe-ecccCEE
Confidence            45666665543 44444322 223566666654 444444 34556666663332210  0222222 0222 4567777


Q ss_pred             EcCCCCcCccc-cccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccch-HHHHhcCCCCEEecCCCCC
Q 047461          136 NLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELP-SSIERLLRLGYLDLSDCKR  211 (312)
Q Consensus       136 ~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~~  211 (312)
                      .+..+  ...+ ..++.++++|+.+++..+  +..++...  ..+|+.+.+ .+.++.++ ..+.++.+|+.+++.++..
T Consensus       209 ~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~  283 (401)
T 4fdw_A          209 LLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTF  283 (401)
T ss_dssp             ECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred             EeCCc--hheehhhHhhCCCCCCEEecCCC--ccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccc
Confidence            76643  2333 334556667777776652  22222111  246666666 33455554 3466777888888876554


Q ss_pred             C-----CcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCC
Q 047461          212 L-----KSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       212 ~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~  283 (312)
                      .     ..-+.+|..+++|+.+.+.+ .+..--...|.++.+|+.+.+..+ ++.+. .++..+ +|+.+++.+|...
T Consensus       284 ~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          284 NDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             cCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            3     23345677788888888874 333333456777888888888654 66443 456777 8888888888654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.06  E-value=7.8e-10  Score=95.34  Aligned_cols=93  Identities=10%  Similarity=-0.059  Sum_probs=68.3

Q ss_pred             cCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCC-eEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          183 LRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLG-VLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       183 l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      +.+|.++.++. .+.++.+|+.+++.+| +...-+.+|.++++|+ .+.+.+ .+..--+..|.++++|+.++++.|.++
T Consensus       233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~  310 (329)
T 3sb4_A          233 ISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT  310 (329)
T ss_dssp             CTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred             CCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence            33344444543 3667788899998876 5555556788888898 999977 444444577889999999999999998


Q ss_pred             ccch-HhhccCCCcEEEe
Q 047461          261 RIPE-SIIQLFVSGYLLL  277 (312)
Q Consensus       261 ~~~~-~l~~~~~L~~L~l  277 (312)
                      .++. ++..+++|+.++.
T Consensus       311 ~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          311 TLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EECTTTTCTTCCCCEEEC
T ss_pred             ccchhhhcCCcchhhhcc
Confidence            6664 6788999988763

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.03  E-value=5.5e-11  Score=104.21  Aligned_cols=154  Identities=15%  Similarity=0.021  Sum_probs=99.7

Q ss_pred             cCCcEEEcCCCCcCccccccc-cCCCcCcEEeccCCCCCCCC-Ccc------ccCCCCeEEcCCccccc-----chHHHH
Q 047461          130 NKLVTLNLRGSKSLKSLPSGI-FNLEFLTKLDLSGCSKLKRL-PEI------SSGNISWLFLRGIAIEE-----LPSSIE  196 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~-p~~------~~~~L~~L~l~~~~l~~-----l~~~~~  196 (312)
                      ++|++|++++|.+.......+ ..+++|+.|++++|.....- ...      ..+.|+.|++++|.++.     ++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            467888888877543322222 23567788888886422110 000      12578899999998874     455567


Q ss_pred             hcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCcc-cchHhh
Q 047461          197 RLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIER-IPESII  267 (312)
Q Consensus       197 ~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~~-~~~~l~  267 (312)
                      ..++|++|++++|.+.+.    ++..+...++|++|++++|.+.+.    ++..+...++|+.|++++|.|+. -...+.
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~  260 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR  260 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence            788999999999987542    355667788999999999988653    45566677999999999999983 223343


Q ss_pred             cc---C--CCcEEE--ecCCcCC
Q 047461          268 QL---F--VSGYLL--LSYGIVE  283 (312)
Q Consensus       268 ~~---~--~L~~L~--l~~n~~~  283 (312)
                      ..   .  .++.+.  +..+.+.
T Consensus       261 ~~~~~~~~~L~~l~~ll~~~~~~  283 (372)
T 3un9_A          261 DLGGAAEGGARVVVSLTEGTAVS  283 (372)
T ss_dssp             HCC------CEEECCCC----CH
T ss_pred             HHhcCCCccchhhHhhhcCCccC
Confidence            32   1  166666  5666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.01  E-value=1.2e-08  Score=90.11  Aligned_cols=239  Identities=10%  Similarity=0.091  Sum_probs=160.8

Q ss_pred             cchhcCCCCCcEEEeeccccccccccccccCC-CCCCCCccEEeeCCCCCCCCCCcc--CcCCccEEeCCCCcccchhhh
Q 047461           22 SNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQ-DPGFAEVKYLHWHGYPLKSLPSNL--SAEKLMLLEVPDSDIKRLWDC   98 (312)
Q Consensus        22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~~~   98 (312)
                      ..+|..+ +|+.+.+..+.        ..... .+...+|+.+.+.. .+..++...  .+++|+.++++.|.+..++..
T Consensus       129 ~~aF~~~-~L~~i~l~~~i--------~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~  198 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEGL--------KSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAS  198 (401)
T ss_dssp             TTTTTTC-CCSEEECCTTC--------CEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTT
T ss_pred             HhhcccC-CccEEEeCCCc--------cEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechh
Confidence            3567664 68888887632        11211 22226799999876 566666433  789999999999999988865


Q ss_pred             cccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccc-cccCCCcCcEEeccCCCCCCCCCccc---
Q 047461           99 VKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPS-GIFNLEFLTKLDLSGCSKLKRLPEIS---  174 (312)
Q Consensus        99 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~l~~~p~~~---  174 (312)
                      ...+.+|+.+.....   ...+.. ..|..+++|+.+.+..+  ...++. ++.+ .+|+.+.+..+  +..++...   
T Consensus       199 aF~~~~L~~l~lp~~---l~~I~~-~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~--i~~I~~~aF~~  269 (401)
T 4fdw_A          199 TFVYAGIEEVLLPVT---LKEIGS-QAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG--VTNIASRAFYY  269 (401)
T ss_dssp             TTTTCCCSEEECCTT---CCEECT-TTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT--CCEECTTTTTT
T ss_pred             hEeecccCEEEeCCc---hheehh-hHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC--ccEEChhHhhC
Confidence            444678875544321   222222 27788999999999874  344444 4444 78999998552  33333222   


Q ss_pred             cCCCCeEEcCCcccc-----cch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCC
Q 047461          175 SGNISWLFLRGIAIE-----ELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSS  248 (312)
Q Consensus       175 ~~~L~~L~l~~~~l~-----~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~  248 (312)
                      +.+|+.+.+.++.+.     .++ ..+.++++|+.+++.. .+...-..+|.++++|+.+.+.. ++..--...|.++ +
T Consensus       270 c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~  346 (401)
T 4fdw_A          270 CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-G  346 (401)
T ss_dssp             CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-C
T ss_pred             CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-C
Confidence            468999999887665     344 4577899999999984 45555556788889999999965 3443345567788 9


Q ss_pred             CcEEeccCCCCcccch-HhhccC-CCcEEEecCCcC
Q 047461          249 PITFNLAKTNIERIPE-SIIQLF-VSGYLLLSYGIV  282 (312)
Q Consensus       249 L~~L~l~~n~l~~~~~-~l~~~~-~L~~L~l~~n~~  282 (312)
                      |+.+++.+|.+..++. .+..++ .++.|.+-.+.+
T Consensus       347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~  382 (401)
T 4fdw_A          347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV  382 (401)
T ss_dssp             CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred             CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence            9999999998875543 445553 566777666543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=1.6e-09  Score=94.25  Aligned_cols=136  Identities=14%  Similarity=0.139  Sum_probs=80.5

Q ss_pred             ccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccc-hHHHH--hcCCCCEEecCCC--CCCC-----cCch
Q 047461          148 SGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEEL-PSSIE--RLLRLGYLDLSDC--KRLK-----SLPS  217 (312)
Q Consensus       148 ~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l-~~~~~--~l~~L~~L~l~~n--~~~~-----~~~~  217 (312)
                      ..+..+|+|+.|.+++|..+ .++....++|+.|++..+.++.- ...+.  .+++|++|+|+.+  ...+     .+..
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~  244 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP  244 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence            33445677777777765222 22322346777887777766531 12232  5778888887531  1111     1111


Q ss_pred             hh--hcCCCCCeEeccCCCCCCcchhhhh---CCCCCcEEeccCCCCcc-----cchHhhccCCCcEEEecCCcCCc
Q 047461          218 SL--YRLKSLGVLSLCGCSNLQRLPECLG---QLSSPITFNLAKTNIER-----IPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       218 ~l--~~l~~L~~L~l~~~~~~~~~p~~~~---~l~~L~~L~l~~n~l~~-----~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      .+  ..+++|++|++++|.+.+..+..+.   .+++|+.|+++.|.++.     ++..+..+++|+.|++++|.+.+
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            22  2467888888888776554433332   46778888888888773     33344567888888888887654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.89  E-value=5.7e-09  Score=90.52  Aligned_cols=100  Identities=22%  Similarity=0.134  Sum_probs=49.3

Q ss_pred             cEEEcCCC-CcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecC
Q 047461          133 VTLNLRGS-KSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLS  207 (312)
Q Consensus       133 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~  207 (312)
                      ..++.+++ . +..+|. +..+++|+.|++++++.+..++...   ..+|+.|+|++|.++.++. .++.+++|++|+|+
T Consensus        11 ~~v~~~~~n~-l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGA-LDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCC-CTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCC-CCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            34566665 4 555666 6667777777776533344333211   3445555555555554432 33445555555555


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCC
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSN  235 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~  235 (312)
                      +|++.+..+..+..++ |+.|++.+|.+
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~  115 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPL  115 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCc
Confidence            5544433222222222 55555554443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.68  E-value=3.8e-08  Score=77.37  Aligned_cols=108  Identities=12%  Similarity=0.052  Sum_probs=74.8

Q ss_pred             CCCeEEcCCc-ccc-----cchHHHHhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCc----chhh
Q 047461          177 NISWLFLRGI-AIE-----ELPSSIERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQR----LPEC  242 (312)
Q Consensus       177 ~L~~L~l~~~-~l~-----~l~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~p~~  242 (312)
                      .|++|++++| .+.     .+...+...++|++|+|++|.+...    +...+...++|++|++++|.+...    +...
T Consensus        37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~  116 (185)
T 1io0_A           37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA  116 (185)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence            4555555555 444     2344555667888888888876542    344555667888888888877653    4566


Q ss_pred             hhCCCCCcEEec--cCCCCcc-----cchHhhccCCCcEEEecCCcCCc
Q 047461          243 LGQLSSPITFNL--AKTNIER-----IPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       243 ~~~l~~L~~L~l--~~n~l~~-----~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +...++|++|++  ++|.++.     +...+...++|++|++++|.+..
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            677788999999  7788872     44556677899999999997753

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.53  E-value=6.1e-08  Score=84.31  Aligned_cols=151  Identities=13%  Similarity=0.157  Sum_probs=86.0

Q ss_pred             CCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCC-CCcc---ccCCCCeEEcCC--c------ccccchHH
Q 047461          127 PRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKR-LPEI---SSGNISWLFLRG--I------AIEELPSS  194 (312)
Q Consensus       127 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~-~p~~---~~~~L~~L~l~~--~------~l~~l~~~  194 (312)
                      ..+|+|+.|.++++.. ..+++ + ..++|++|++..|..... +...   ..++|+.|+|+.  +      .+..+...
T Consensus       169 ~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~  245 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL  245 (362)
T ss_dssp             HTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred             hcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence            3455666666665521 12232 2 256666666665432110 0000   124666666531  1      12222222


Q ss_pred             H--HhcCCCCEEecCCCCCCCcCchhhh---cCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCc-ccch
Q 047461          195 I--ERLLRLGYLDLSDCKRLKSLPSSLY---RLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIE-RIPE  264 (312)
Q Consensus       195 ~--~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~-~~~~  264 (312)
                      +  ..+++|++|++.+|.+.+..+..+.   .+++|++|+++.|.+.+.    ++..+..+++|+.|+++.|.++ ..-.
T Consensus       246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~  325 (362)
T 2ra8_A          246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK  325 (362)
T ss_dssp             SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred             HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence            2  2478999999998887654333333   477899999998876653    4444456799999999999887 3333


Q ss_pred             HhhccCCCcEEEecCCc
Q 047461          265 SIIQLFVSGYLLLSYGI  281 (312)
Q Consensus       265 ~l~~~~~L~~L~l~~n~  281 (312)
                      .+.+.- ...++++.++
T Consensus       326 ~l~~al-g~~~~~~~~~  341 (362)
T 2ra8_A          326 ELQKSL-PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHC-CSEEECCSBC
T ss_pred             HHHHHc-CCEEEecCCc
Confidence            343311 4568888876

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.49  E-value=1.5e-05  Score=70.11  Aligned_cols=83  Identities=12%  Similarity=-0.065  Sum_probs=57.4

Q ss_pred             HHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCc
Q 047461          195 IERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSG  273 (312)
Q Consensus       195 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~  273 (312)
                      +..+.+|+.+.+..+ +...-..++.++++|+.+++.. .+..--...|.++.+|+.+.+..+ ++.+. .++..|++|+
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  369 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK  369 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence            456778888887653 3333345677788899888864 232222456778889999988766 66554 4678889999


Q ss_pred             EEEecCC
Q 047461          274 YLLLSYG  280 (312)
Q Consensus       274 ~L~l~~n  280 (312)
                      .+++..+
T Consensus       370 ~i~lp~~  376 (394)
T 4fs7_A          370 KVELPKR  376 (394)
T ss_dssp             EEEEEGG
T ss_pred             EEEECCC
Confidence            8888765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=1.7e-07  Score=73.59  Aligned_cols=113  Identities=15%  Similarity=0.080  Sum_probs=74.8

Q ss_pred             cCCCcCCcEEEcCCC-CcCcc----ccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccc-----cchHHH
Q 047461          126 MPRLNKLVTLNLRGS-KSLKS----LPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIE-----ELPSSI  195 (312)
Q Consensus       126 ~~~l~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~-----~l~~~~  195 (312)
                      +...+.|++|++++| .+...    +...+...++|++|+++                      +|.+.     .+...+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls----------------------~n~i~~~g~~~l~~~L   89 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV----------------------GTRSNDPVAFALAEML   89 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT----------------------TSCCCHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECc----------------------CCCCChHHHHHHHHHH
Confidence            344567777777777 54322    22223334445555544                      44444     244556


Q ss_pred             HhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEec--cCCCCCCc----chhhhhCCCCCcEEeccCCCCc
Q 047461          196 ERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSL--CGCSNLQR----LPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       196 ~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l--~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      ...++|++|+|++|.+...    +...+...++|++|++  ++|.+...    +...+...++|++|++++|.+.
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            6678899999999887653    4556677788999999  77777653    4556667789999999999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=1.3e-07  Score=72.93  Aligned_cols=86  Identities=17%  Similarity=0.161  Sum_probs=60.4

Q ss_pred             CCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCC-CCCcchhhhhCC----CCCcEEeccCCC-Cc-ccchHhhccCC
Q 047461          199 LRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQL----SSPITFNLAKTN-IE-RIPESIIQLFV  271 (312)
Q Consensus       199 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l----~~L~~L~l~~n~-l~-~~~~~l~~~~~  271 (312)
                      ..|++||+++|.++..-...+..+++|++|++++|. +++..-..+..+    ++|++|++++|. || .--..+.++++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357788888877665555556778888888888884 445444555553    468888888875 77 22245677889


Q ss_pred             CcEEEecCCcCCc
Q 047461          272 SGYLLLSYGIVED  284 (312)
Q Consensus       272 L~~L~l~~n~~~~  284 (312)
                      |++|++++|+..+
T Consensus       141 L~~L~L~~c~~It  153 (176)
T 3e4g_A          141 LKYLFLSDLPGVK  153 (176)
T ss_dssp             CCEEEEESCTTCC
T ss_pred             CCEEECCCCCCCC
Confidence            9999999986544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.41  E-value=4.2e-06  Score=73.77  Aligned_cols=144  Identities=13%  Similarity=0.024  Sum_probs=85.2

Q ss_pred             cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchH-HHHhcCCCCEE
Q 047461          126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPS-SIERLLRLGYL  204 (312)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L  204 (312)
                      +..+..++.+.+..+. .......+.....++.+..... .+....-....+|+.+.+..+ ++.++. .+.++.+|+.+
T Consensus       249 f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~-~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i  325 (394)
T 4fs7_A          249 FYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSV-IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSI  325 (394)
T ss_dssp             TTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSS-EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEE
T ss_pred             ccccccceeEEcCCCc-ceeeccccccccccceeccCce-eeccccccccccccccccccc-cceechhhhcCCCCCCEE
Confidence            3344555555554432 2222223334455555544331 111111111357777777653 555543 46778999999


Q ss_pred             ecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEE
Q 047461          205 DLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYL  275 (312)
Q Consensus       205 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L  275 (312)
                      ++..+ +...-..+|.++++|+.+.+..+ +..--...|.++.+|+.+++..+ ++.+...+..|++|+.+
T Consensus       326 ~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          326 DLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             EeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            99653 44444567888999999999764 43333457889999999999754 45455567777777754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.29  E-value=1.7e-06  Score=71.57  Aligned_cols=80  Identities=16%  Similarity=0.083  Sum_probs=52.0

Q ss_pred             HhcCCCCEEecCCCCCCC--cCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEeccCCCCc-ccc-------h
Q 047461          196 ERLLRLGYLDLSDCKRLK--SLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNLAKTNIE-RIP-------E  264 (312)
Q Consensus       196 ~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~l~-~~~-------~  264 (312)
                      ..+++|+.|+|++|++.+  .++..+..+++|+.|+|++|.+.+. -...+..+ +|+.|++++|.+. .+|       .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence            457788888888887766  4455566777888888877766543 11222233 7788888888776 333       2


Q ss_pred             HhhccCCCcEEE
Q 047461          265 SIIQLFVSGYLL  276 (312)
Q Consensus       265 ~l~~~~~L~~L~  276 (312)
                      .+..+|+|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            356677777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.14  E-value=0.00016  Score=63.56  Aligned_cols=85  Identities=12%  Similarity=0.048  Sum_probs=55.7

Q ss_pred             HHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCc
Q 047461          195 IERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSG  273 (312)
Q Consensus       195 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~  273 (312)
                      +.++.+|+.+.+.. .+...-..+|.++++|+.+.+..+ +..--...|.++.+|+.+.+..+ ++.+. .++..|.+|+
T Consensus       284 F~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~  360 (394)
T 4gt6_A          284 FMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALN  360 (394)
T ss_dssp             TTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC
T ss_pred             cccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC
Confidence            44566677777653 333333346677788888888652 32223456778888888888654 66554 4678888999


Q ss_pred             EEEecCCcC
Q 047461          274 YLLLSYGIV  282 (312)
Q Consensus       274 ~L~l~~n~~  282 (312)
                      .+++.++..
T Consensus       361 ~i~~~~~~~  369 (394)
T 4gt6_A          361 NIEYSGSRS  369 (394)
T ss_dssp             EEEESSCHH
T ss_pred             EEEECCcee
Confidence            888887743

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.08  E-value=1.6e-06  Score=71.75  Aligned_cols=65  Identities=14%  Similarity=0.094  Sum_probs=55.1

Q ss_pred             hcCCCCCeEeccCCCCCC--cchhhhhCCCCCcEEeccCCCCcccchHhhccC--CCcEEEecCCcCCcc
Q 047461          220 YRLKSLGVLSLCGCSNLQ--RLPECLGQLSSPITFNLAKTNIERIPESIIQLF--VSGYLLLSYGIVEDT  285 (312)
Q Consensus       220 ~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~--~L~~L~l~~n~~~~~  285 (312)
                      ..+++|+.|++++|.+.+  .+|..+..+++|+.|+|++|.|+.+ ..+..+.  +|++|+|++|++.+.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDT  235 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccc
Confidence            468899999999999877  6778888999999999999999966 3345455  999999999999863

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.03  E-value=0.00024  Score=62.46  Aligned_cols=125  Identities=10%  Similarity=0.083  Sum_probs=74.3

Q ss_pred             ccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCC
Q 047461          150 IFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSL  225 (312)
Q Consensus       150 l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  225 (312)
                      +...+.|+.+.+....  ..+....   ...|+.+.+. +.++.++. .+.++.+|+.+++..+ +...-..+|.++++|
T Consensus       261 F~~c~~L~~i~lp~~~--~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSV--VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTC--CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred             eeecccccEEeccccc--ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence            4445566666654421  1111111   3567777775 34555553 4677899999999753 444445678889999


Q ss_pred             CeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCc
Q 047461          226 GVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGI  281 (312)
Q Consensus       226 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~  281 (312)
                      +.+.+.. .+..--...|.++.+|+.+++.++....  ..+..+.+|+.+.+..+.
T Consensus       337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQW--NAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCCCCC---------
T ss_pred             CEEEECc-ccCEEhHhHhhCCCCCCEEEECCceeeh--hhhhccCCCCEEEeCCCC
Confidence            9999965 3433335678899999999998865331  345667888888776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.99  E-value=1.3e-05  Score=61.79  Aligned_cols=35  Identities=11%  Similarity=0.089  Sum_probs=17.3

Q ss_pred             CCCeEeccCCC-CCCcchhhhhCCCCCcEEeccCCC
Q 047461          224 SLGVLSLCGCS-NLQRLPECLGQLSSPITFNLAKTN  258 (312)
Q Consensus       224 ~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n~  258 (312)
                      +|++|++++|. +++.--..+..+++|+.|++++|.
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCT
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCC
Confidence            45555555553 333333344455555555555553

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.94  E-value=0.0017  Score=56.58  Aligned_cols=102  Identities=8%  Similarity=-0.030  Sum_probs=59.0

Q ss_pred             CCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEec
Q 047461          176 GNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNL  254 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l  254 (312)
                      ..|+.+.+..+ ++.+.. .+.++.+|+.+.+.. .+...-...+..+++|+.+.+.++.+..--...|.++.+|+.+.+
T Consensus       240 ~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          240 KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred             ccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEc
Confidence            34555555443 333332 344566677777654 233333345667777888877654443333456677778888887


Q ss_pred             cCCCCcccc-hHhhccCCCcEEEecCC
Q 047461          255 AKTNIERIP-ESIIQLFVSGYLLLSYG  280 (312)
Q Consensus       255 ~~n~l~~~~-~~l~~~~~L~~L~l~~n  280 (312)
                      ..+ ++.+. .++..|.+|+.+.+..+
T Consensus       318 p~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          318 PTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             Ccc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            643 55444 35677777877776543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.74  E-value=0.0026  Score=55.37  Aligned_cols=76  Identities=11%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCC-CCCCCCccEEeeCCCCCCCCCCcc-CcC
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQ-DPGFAEVKYLHWHGYPLKSLPSNL-SAE   80 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-~l~   80 (312)
                      ++|+.+.+.- ..  -..+..+|.++.+|+.+.+.++.        ..... .+...+|+.+.+-. .+..++... ...
T Consensus        46 ~~i~~v~ip~-~v--t~Ig~~aF~~C~~L~~I~lp~~v--------~~Ig~~aF~~c~l~~i~~~~-~l~~I~~~aF~~~  113 (379)
T 4h09_A           46 DRISEVRVNS-GI--TSIGEANFNSCYNMTKVTVASTV--------TSIGDGAFADTKLQSYTGME-RVKKFGDYVFQGT  113 (379)
T ss_dssp             GGCSEEEECT-TE--EEECTTTTTTCTTCCEEEECTTC--------CEECTTTTTTCCCCEEEECT-TCCEECTTTTTTC
T ss_pred             cCCEEEEeCC-Cc--cChHHHHhhCCCCCCEEEeCCcc--------eEechhhhcCCCCceEECCc-eeeEeccceeccC
Confidence            4566666642 12  22345789999999999997632        11111 12224566665543 233443322 334


Q ss_pred             CccEEeCCCC
Q 047461           81 KLMLLEVPDS   90 (312)
Q Consensus        81 ~L~~L~l~~~   90 (312)
                      +|+.+.+..+
T Consensus       114 ~L~~i~lp~~  123 (379)
T 4h09_A          114 DLDDFEFPGA  123 (379)
T ss_dssp             CCSEEECCTT
T ss_pred             CcccccCCCc
Confidence            6777777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.57  E-value=0.00028  Score=55.35  Aligned_cols=106  Identities=11%  Similarity=0.027  Sum_probs=67.0

Q ss_pred             CCCeEEcCCc-cccc-----chHHHHhcCCCCEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCc----chhh
Q 047461          177 NISWLFLRGI-AIEE-----LPSSIERLLRLGYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQR----LPEC  242 (312)
Q Consensus       177 ~L~~L~l~~~-~l~~-----l~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~p~~  242 (312)
                      .|+.|+++++ .+..     +...+..-+.|+.|+|++|.+..    .+...+..-+.|++|+|+.|.+...    +.+.
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a  121 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS  121 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence            4555555543 4442     33445556678888888877654    3444555667788888888777643    3445


Q ss_pred             hhCCCCCcEEeccCC---CCc-----ccchHhhccCCCcEEEecCCcC
Q 047461          243 LGQLSSPITFNLAKT---NIE-----RIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       243 ~~~l~~L~~L~l~~n---~l~-----~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      +..-+.|+.|++++|   .+.     .+.+.+..-+.|+.|+++.|..
T Consensus       122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            555677888888765   333     2334556678888888887754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.93  E-value=0.0019  Score=50.62  Aligned_cols=87  Identities=16%  Similarity=0.061  Sum_probs=66.6

Q ss_pred             HHHhcCCCCEEecCCC-CCCC----cCchhhhcCCCCCeEeccCCCCCC----cchhhhhCCCCCcEEeccCCCCc----
Q 047461          194 SIERLLRLGYLDLSDC-KRLK----SLPSSLYRLKSLGVLSLCGCSNLQ----RLPECLGQLSSPITFNLAKTNIE----  260 (312)
Q Consensus       194 ~~~~l~~L~~L~l~~n-~~~~----~~~~~l~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~l~----  260 (312)
                      .+..-+.|+.|+|+++ .+..    .+...+..-+.|+.|+|++|.+.+    .+.+.+..-+.|+.|+|++|.|+    
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga  115 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL  115 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence            3445678999999986 5433    255667777899999999998764    45666667789999999999998    


Q ss_pred             -ccchHhhccCCCcEEEecCC
Q 047461          261 -RIPESIIQLFVSGYLLLSYG  280 (312)
Q Consensus       261 -~~~~~l~~~~~L~~L~l~~n  280 (312)
                       .+.+.+..-+.|++|+|++|
T Consensus       116 ~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          116 ARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHhhCCceeEEECCCC
Confidence             23345566678999999876

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.48  E-value=0.018  Score=41.81  Aligned_cols=33  Identities=21%  Similarity=0.059  Sum_probs=13.1

Q ss_pred             CCEEecCCCCCCCcCchhhhcCCCCCeEeccCC
Q 047461          201 LGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC  233 (312)
Q Consensus       201 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  233 (312)
                      |++|+|++|++...-+..+..+++|+.|+|.+|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            444444444433322233333444444444433

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=94.85  E-value=0.055  Score=39.18  Aligned_cols=43  Identities=23%  Similarity=0.285  Sum_probs=29.7

Q ss_pred             CCCccccCCCCeEEcCCcccccchHH-HHhcCCCCEEecCCCCC
Q 047461          169 RLPEISSGNISWLFLRGIAIEELPSS-IERLLRLGYLDLSDCKR  211 (312)
Q Consensus       169 ~~p~~~~~~L~~L~l~~~~l~~l~~~-~~~l~~L~~L~l~~n~~  211 (312)
                      .+|.....+++.|+|++|.++.++.. +..+++|+.|+|++|..
T Consensus        24 ~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           24 SLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             cCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            44433335677777777777777653 56778888888888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	312
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 6/106 (5%)

Query: 96  WDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEF 155
                 +S L+++     +   +     +L      L  LN+  +K L  LP+    LE 
Sbjct: 250 DVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLE- 307

Query: 156 LTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRL 201
             +L  S    L  +PE    N+  L +    + E P   E +  L
Sbjct: 308 --RLIASFN-HLAEVPE-LPQNLKQLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 6/76 (7%)

Query: 150 IFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC 209
                 L +L++S   KL  LP      +  L      + E+P   + L     L +   
Sbjct: 280 CDLPPSLEELNVSNN-KLIELPA-LPPRLERLIASFNHLAEVPELPQNLK---QLHVEYN 334

Query: 210 KRLKSLPSSLYRLKSL 225
             L+  P     ++ L
Sbjct: 335 P-LREFPDIPESVEDL 349

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	312
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.86
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.85
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.68
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.53
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.5
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.47
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.4
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.25
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.13
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.12
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.09
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.94
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.47
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.05
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.83
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.64

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=7.6e-23  Score=174.10  Aligned_cols=245  Identities=16%  Similarity=0.149  Sum_probs=168.3

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCC-CCCC-CCCCcc-CcCCccEEeCCCCcccchh-hhcccCC
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHG-YPLK-SLPSNL-SAEKLMLLEVPDSDIKRLW-DCVKHYS  103 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~-~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~-~~~~~l~  103 (312)
                      .+++.|+++++.+.+.    ..+|..+.. ++|++|++++ |.+. .+|..+ ++++|++|++++|.+...+ ..+..++
T Consensus        50 ~~v~~L~L~~~~l~g~----~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKP----YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSC----EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred             EEEEEEECCCCCCCCC----CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchh
Confidence            4688888888764221    245566666 8889888876 5543 677655 8888999999988887644 4456666


Q ss_pred             CchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcC-cEEeccCCCCCCCCCccc-cCCCCeE
Q 047461          104 KLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFL-TKLDLSGCSKLKRLPEIS-SGNISWL  181 (312)
Q Consensus       104 ~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L-~~L~l~~~~~l~~~p~~~-~~~L~~L  181 (312)
                      .|+.+...... ....+|.  .++.++.++++++++|.+.+.+|..+..+.++ +.++++.|...+..|... ......+
T Consensus       126 ~L~~l~l~~N~-~~~~~p~--~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l  202 (313)
T d1ogqa_         126 TLVTLDFSYNA-LSGTLPP--SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFV  202 (313)
T ss_dssp             TCCEEECCSSE-EESCCCG--GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEE
T ss_pred             hhccccccccc-ccccCch--hhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77633222211 1333444  77788888888888888777788777776665 677777754433333322 2344567


Q ss_pred             EcCCcccc-cchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          182 FLRGIAIE-ELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       182 ~l~~~~l~-~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      ++..+... .+|...+.+.+++.+++++|.+.+.++ .++.+++|+.|++++|.+.+.+|+.++++++|+.|++++|+++
T Consensus       203 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~  281 (313)
T d1ogqa_         203 DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             ECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc
Confidence            77766555 355666677788888888877666554 4677778888888888877788888888888888888888887


Q ss_pred             -ccchHhhccCCCcEEEecCCcC
Q 047461          261 -RIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       261 -~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                       .+|+ ++++++|+.+++++|+.
T Consensus       282 g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         282 GEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             EECCC-STTGGGSCGGGTCSSSE
T ss_pred             ccCCC-cccCCCCCHHHhCCCcc
Confidence             6664 46777888888888864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=5.7e-21  Score=166.56  Aligned_cols=274  Identities=16%  Similarity=0.174  Sum_probs=156.2

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCc
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKL   82 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L   82 (312)
                      +++++.+.......+    +.+..+++|++|++++|.+.+        ...+.. ++|++|++++|.+..+++...+++|
T Consensus        45 ~l~~L~l~~~~I~~l----~gl~~L~nL~~L~Ls~N~l~~--------l~~l~~L~~L~~L~L~~n~i~~i~~l~~l~~L  112 (384)
T d2omza2          45 QVTTLQADRLGIKSI----DGVEYLNNLTQINFSNNQLTD--------ITPLKNLTKLVDILMNNNQIADITPLANLTNL  112 (384)
T ss_dssp             TCCEEECCSSCCCCC----TTGGGCTTCCEEECCSSCCCC--------CGGGTTCTTCCEEECCSSCCCCCGGGTTCTTC
T ss_pred             CCCEEECCCCCCCCc----cccccCCCCCEEeCcCCcCCC--------CccccCCccccccccccccccccccccccccc
Confidence            455555554443322    346778888888888876421        122445 7888888888888777766688888


Q ss_pred             cEEeCCCCcccchhhhcccCCCch----------hcchhh----------------cccc------------cccCCCCC
Q 047461           83 MLLEVPDSDIKRLWDCVKHYSKLN----------QIIHAA----------------CHKL------------IAKIPNPT  124 (312)
Q Consensus        83 ~~L~l~~~~~~~~~~~~~~l~~L~----------~l~~~~----------------~~~~------------~~~~~~~~  124 (312)
                      +.+++.++.+..++.... ...+.          .+....                ....            ........
T Consensus       113 ~~L~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (384)
T d2omza2         113 TGLTLFNNQITDIDPLKN-LTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS  191 (384)
T ss_dssp             CEEECCSSCCCCCGGGTT-CTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccc
Confidence            888888776654332110 00000          000000                0000            00000001


Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCE
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGY  203 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~  203 (312)
                      ....+++++.+.+++|.+.+..|  ....++|+.|++++| .+..++... .++++.+++.+|.+++++. ++.+++|++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~  267 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE  267 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCC-CCCCcchhhcccccchhccccCccCCCCc-ccccccCCE
Confidence            23345556666666555332222  234455555555553 233333222 3445555555555554432 334445555


Q ss_pred             EecCCCCCCCc--------------------CchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc
Q 047461          204 LDLSDCKRLKS--------------------LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP  263 (312)
Q Consensus       204 L~l~~n~~~~~--------------------~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~  263 (312)
                      |+++++.+.+.                    ....+..+++++.+++++|++.+. + .+..+++|++|++++|+++.++
T Consensus       268 L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~l~  345 (384)
T d2omza2         268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSDVS  345 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCCCG
T ss_pred             eeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCCCh
Confidence            55544433221                    012366778899999998877654 3 3778999999999999999876


Q ss_pred             hHhhccCCCcEEEecCCcCCccccccccCCCCchhHH
Q 047461          264 ESIIQLFVSGYLLLSYGIVEDTLRIQHTNHTPAVRWQ  300 (312)
Q Consensus       264 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~  300 (312)
                       .+..+++|++|++++|++.+-.++.   +++.++.+
T Consensus       346 -~l~~l~~L~~L~l~~N~l~~l~~l~---~l~~L~~L  378 (384)
T d2omza2         346 -SLANLTNINWLSAGHNQISDLTPLA---NLTRITQL  378 (384)
T ss_dssp             -GGGGCTTCCEEECCSSCCCBCGGGT---TCTTCSEE
T ss_pred             -hHcCCCCCCEEECCCCcCCCChhhc---cCCCCCEe
Confidence             5889999999999999998876665   44554443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.86  E-value=1.3e-21  Score=166.33  Aligned_cols=237  Identities=18%  Similarity=0.211  Sum_probs=189.4

Q ss_pred             CCccEEeeCCCCCC---CCCCcc-CcCCccEEeCCC-Cccc-chhhhcccCCCchh--cchhhcccccccCCCCCCcCCC
Q 047461           58 AEVKYLHWHGYPLK---SLPSNL-SAEKLMLLEVPD-SDIK-RLWDCVKHYSKLNQ--IIHAACHKLIAKIPNPTLMPRL  129 (312)
Q Consensus        58 ~~L~~L~l~~~~~~---~~~~~~-~l~~L~~L~l~~-~~~~-~~~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~~~~~l  129 (312)
                      .+++.|+++++.+.   .+|..+ .+++|++|++++ |.+. .+|..+..+++|+.  ++.+..   ....+.  .+..+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l---~~~~~~--~~~~~  124 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV---SGAIPD--FLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC---EEECCG--GGGGC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccc---cccccc--cccch
Confidence            36999999998765   366655 899999999986 6776 78999999999994  444442   222333  67788


Q ss_pred             cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--c-CCCCeEEcCCcccccc-hHHHHhcCCCCEEe
Q 047461          130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--S-GNISWLFLRGIAIEEL-PSSIERLLRLGYLD  205 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~-~~L~~L~l~~~~l~~l-~~~~~~l~~L~~L~  205 (312)
                      ++|+++++++|.....+|..+..+++++.+++++|...+.+|...  . ..++.+.+..|.++.. |..++.+ ....++
T Consensus       125 ~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l-~~~~l~  203 (313)
T d1ogqa_         125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVD  203 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-CCSEEE
T ss_pred             hhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence            999999999999888899999999999999999977665666543  2 3358899999998854 4455554 455899


Q ss_pred             cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc-ccchHhhccCCCcEEEecCCcCCc
Q 047461          206 LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE-RIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       206 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~-~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +..+...+.+|..++.+++++.+++++|.+.+.+| .+..+++|+.|++++|+++ .+|+.++++++|++|+|++|.+.|
T Consensus       204 l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            99988888899988999999999999998877665 5788899999999999999 899999999999999999999987


Q ss_pred             cccccccCCCCchhHHHhh
Q 047461          285 TLRIQHTNHTPAVRWQEIW  303 (312)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~  303 (312)
                      ..|.  +.++..++..+..
T Consensus       283 ~iP~--~~~L~~L~~l~l~  299 (313)
T d1ogqa_         283 EIPQ--GGNLQRFDVSAYA  299 (313)
T ss_dssp             ECCC--STTGGGSCGGGTC
T ss_pred             cCCC--cccCCCCCHHHhC
Confidence            6552  2345555555443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.85  E-value=1.3e-19  Score=157.79  Aligned_cols=251  Identities=14%  Similarity=0.174  Sum_probs=161.2

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCcc----
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNL----   77 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~----   77 (312)
                      .+++.+++..+....+    ..++++++|++|++++|.+.+.        ..+.. ++|+.++++++....++...    
T Consensus        66 ~nL~~L~Ls~N~l~~l----~~l~~L~~L~~L~L~~n~i~~i--------~~l~~l~~L~~L~~~~~~~~~~~~~~~~~~  133 (384)
T d2omza2          66 NNLTQINFSNNQLTDI----TPLKNLTKLVDILMNNNQIADI--------TPLANLTNLTGLTLFNNQITDIDPLKNLTN  133 (384)
T ss_dssp             TTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCCC--------GGGTTCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred             CCCCEEeCcCCcCCCC----ccccCCcccccccccccccccc--------cccccccccccccccccccccccccccccc
Confidence            4566777666555433    2489999999999999875221        22445 88999998877654433222    


Q ss_pred             -------------------------------------------------------------CcCCccEEeCCCCcccchh
Q 047461           78 -------------------------------------------------------------SAEKLMLLEVPDSDIKRLW   96 (312)
Q Consensus        78 -------------------------------------------------------------~l~~L~~L~l~~~~~~~~~   96 (312)
                                                                                   .++.++.++++++.+..++
T Consensus       134 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~  213 (384)
T d2omza2         134 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT  213 (384)
T ss_dssp             CSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCC
Confidence                                                                         2233444444444444332


Q ss_pred             hhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-c
Q 047461           97 DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-S  175 (312)
Q Consensus        97 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~  175 (312)
                      . ...+++|+.+......  ...++   .+..+++|+.|++++|.+. .+++ +..+++|++|+++++. +..++... .
T Consensus       214 ~-~~~~~~L~~L~l~~n~--l~~~~---~l~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~~~-l~~~~~~~~~  284 (384)
T d2omza2         214 P-LGILTNLDELSLNGNQ--LKDIG---TLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQ-ISNISPLAGL  284 (384)
T ss_dssp             G-GGGCTTCCEEECCSSC--CCCCG---GGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSC-CCCCGGGTTC
T ss_pred             c-ccccCCCCEEECCCCC--CCCcc---hhhcccccchhccccCccC-CCCc-ccccccCCEeeccCcc-cCCCCccccc
Confidence            1 2233444422221110  11111   3455566666666666533 3332 5566667777776643 33333332 4


Q ss_pred             CCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461          176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA  255 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  255 (312)
                      ..++.+.+..|.++.++ .+..+.+++.|++++|++.+. + .+..+++|++|++++|.+.+ ++ .+..+++|+.|+++
T Consensus       285 ~~l~~l~~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~l-~-~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~  359 (384)
T d2omza2         285 TALTNLELNENQLEDIS-PISNLKNLTYLTLYFNNISDI-S-PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAG  359 (384)
T ss_dssp             TTCSEEECCSSCCSCCG-GGGGCTTCSEEECCSSCCSCC-G-GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECC
T ss_pred             ccccccccccccccccc-ccchhcccCeEECCCCCCCCC-c-ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECC
Confidence            56667777777666654 366788999999999987654 3 37889999999999997654 55 58899999999999


Q ss_pred             CCCCcccchHhhccCCCcEEEecCC
Q 047461          256 KTNIERIPESIIQLFVSGYLLLSYG  280 (312)
Q Consensus       256 ~n~l~~~~~~l~~~~~L~~L~l~~n  280 (312)
                      +|+++.+++ +.++++|+.|+|++|
T Consensus       360 ~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         360 HNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCcCCCChh-hccCCCCCEeeCCCC
Confidence            999998765 789999999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=8.4e-20  Score=154.42  Aligned_cols=242  Identities=17%  Similarity=0.132  Sum_probs=176.5

Q ss_pred             CCCcEEEeeccccccccccccccC-CCCCC-CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchhhhcccCCC
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYL-QDPGF-AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLWDCVKHYSK  104 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~l~~  104 (312)
                      +++++|++++|.+       ..++ ..+.. ++|++|+++++.+..+++. + .++.|++|++++|.++.+|...  ...
T Consensus        31 ~~l~~L~Ls~N~i-------~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~--~~~  101 (305)
T d1xkua_          31 PDTALLDLQNNKI-------TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM--PKT  101 (305)
T ss_dssp             TTCCEEECCSSCC-------CCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC--CTT
T ss_pred             CCCCEEECcCCcC-------CCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccch--hhh
Confidence            6799999999764       2222 24555 8999999999998887553 4 7899999999999998877543  223


Q ss_pred             chhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcC--ccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEE
Q 047461          105 LNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSL--KSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF  182 (312)
Q Consensus       105 L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~  182 (312)
                      ++.+.....  ....++. ..+.....+..+....+...  ...+..+..+++|+.+++++|. +..+|....++++.|+
T Consensus       102 l~~L~~~~n--~l~~l~~-~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~~~~~~L~~L~  177 (305)
T d1xkua_         102 LQELRVHEN--EITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGLPPSLTELH  177 (305)
T ss_dssp             CCEEECCSS--CCCBBCH-HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSCCTTCSEEE
T ss_pred             hhhhhcccc--chhhhhh-hhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCcccCCccCEEE
Confidence            332221110  0111211 13345566777888776532  2334456678899999999864 4455555568999999


Q ss_pred             cCCcccccc-hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcc
Q 047461          183 LRGIAIEEL-PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIER  261 (312)
Q Consensus       183 l~~~~l~~l-~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~  261 (312)
                      +.+|..+.. +..+..++.+++|++++|.+.+..+..+.++++|++|++++|.+ ..+|..+..+++|+.|++++|+|+.
T Consensus       178 l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccc-cccccccccccCCCEEECCCCccCc
Confidence            999988754 45678888999999999998887788888999999999999865 4678889999999999999999987


Q ss_pred             cch-------HhhccCCCcEEEecCCcCCc
Q 047461          262 IPE-------SIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       262 ~~~-------~l~~~~~L~~L~l~~n~~~~  284 (312)
                      ++.       .....++|+.|++++|++..
T Consensus       257 i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~  286 (305)
T d1xkua_         257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQY  286 (305)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred             cChhhccCcchhcccCCCCEEECCCCcCcc
Confidence            654       23456889999999998753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.2e-19  Score=150.47  Aligned_cols=132  Identities=26%  Similarity=0.185  Sum_probs=74.9

Q ss_pred             cCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchHH-HHhcCCC
Q 047461          126 MPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPSS-IERLLRL  201 (312)
Q Consensus       126 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~~-~~~l~~L  201 (312)
                      ++.+++|++|++++|+ ....+..+..+++|+.|+++++.... ++...   ..+++.+++.+|.++.++.. +..++++
T Consensus        73 ~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l  150 (266)
T d1p9ag_          73 DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL  150 (266)
T ss_dssp             CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             cccccccccccccccc-ccccccccccccccccccccccccce-eeccccccccccccccccccccceeccccccccccc
Confidence            3456677778887776 34445556677777777777754322 22211   34556666666666555432 3345556


Q ss_pred             CEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          202 GYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       202 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      +.+++++|++.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|++.
T Consensus       151 ~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             hhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            66666666555544445555566666666655543 55555555556666666655543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=3.5e-18  Score=144.32  Aligned_cols=242  Identities=17%  Similarity=0.158  Sum_probs=174.8

Q ss_pred             ceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCc
Q 047461            4 KIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKL   82 (312)
Q Consensus         4 ~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L   82 (312)
                      .++.+++..+..  .......|.++++|++|+++++.+      ....+..+.. ++|++|++++|.++.++... ...+
T Consensus        32 ~l~~L~Ls~N~i--~~l~~~~f~~l~~L~~L~l~~n~~------~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~-~~~l  102 (305)
T d1xkua_          32 DTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKI------SKISPGAFAPLVKLERLYLSKNQLKELPEKM-PKTL  102 (305)
T ss_dssp             TCCEEECCSSCC--CCBCTTTTTTCTTCCEEECCSSCC------CCBCTTTTTTCTTCCEEECCSSCCSBCCSSC-CTTC
T ss_pred             CCCEEECcCCcC--CCcChhHhhccccccccccccccc------cccchhhhhCCCccCEecccCCccCcCccch-hhhh
Confidence            456666555443  334446799999999999999874      2223445666 89999999999999988654 4578


Q ss_pred             cEEeCCCCcccchhhh-cccCCCchhcchhhcc-cccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEe
Q 047461           83 MLLEVPDSDIKRLWDC-VKHYSKLNQIIHAACH-KLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLD  160 (312)
Q Consensus        83 ~~L~l~~~~~~~~~~~-~~~l~~L~~l~~~~~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  160 (312)
                      ..|.+..|.+..++.. +........+...... ........  .+..+++|+.+++++|. ...+|..  .+++|+.|+
T Consensus       103 ~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~--~~~~l~~L~~l~l~~n~-l~~l~~~--~~~~L~~L~  177 (305)
T d1xkua_         103 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG--AFQGMKKLSYIRIADTN-ITTIPQG--LPPSLTELH  177 (305)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTT--GGGGCTTCCEEECCSSC-CCSCCSS--CCTTCSEEE
T ss_pred             hhhhccccchhhhhhhhhhccccccccccccccccccCCCcc--ccccccccCccccccCC-ccccCcc--cCCccCEEE
Confidence            8999999988876543 3344444422222111 11222333  67778899999999988 4455543  478999999


Q ss_pred             ccCCCCCCCCCccc--cCCCCeEEcCCcccccch-HHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCC
Q 047461          161 LSGCSKLKRLPEIS--SGNISWLFLRGIAIEELP-SSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQ  237 (312)
Q Consensus       161 l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~  237 (312)
                      +++|......+...  .+.+++|++++|.++.++ ..+.++++|++|++++|++. .+|..+..+++|++|++++|.+..
T Consensus       178 l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~  256 (305)
T d1xkua_         178 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA  256 (305)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCc
Confidence            99976554444332  467899999999999875 56788999999999999865 567789999999999999987653


Q ss_pred             cc------hhhhhCCCCCcEEeccCCCCc
Q 047461          238 RL------PECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       238 ~~------p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      --      +.......+|+.|++++|+++
T Consensus       257 i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         257 IGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cChhhccCcchhcccCCCCEEECCCCcCc
Confidence            21      223446788999999999987

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=5.9e-19  Score=147.66  Aligned_cols=200  Identities=22%  Similarity=0.265  Sum_probs=120.8

Q ss_pred             CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchhh-hcccCCCchhcchhhcccccccCCCCCCcCCCcCCcE
Q 047461           58 AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLWD-CVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVT  134 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  134 (312)
                      .++++|++++|.++.++.. + .+++|++|+++++.+..++. .+..+..++.+....... ...++ +..++.+++|++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~-~~~l~-~~~~~~l~~L~~  109 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ-LRSVD-PATFHGLGRLHT  109 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT-CCCCC-TTTTTTCTTCCE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc-ccccc-chhhcccccCCE
Confidence            5688899999888888763 3 78889999999888876543 233444444322211111 22221 125666777777


Q ss_pred             EEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCC
Q 047461          135 LNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCK  210 (312)
Q Consensus       135 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~  210 (312)
                      |++++|.+....+..+...++|+.+++++|. ++.+|...   ..+++.|++++|.++.++. .+.++++|+++++++|+
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~  188 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR  188 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EecCCcccccccccccchhcccchhhhcccc-ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcc
Confidence            7777776444344445556667777777743 34443221   3456666666666665543 34556666666666666


Q ss_pred             CCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          211 RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       211 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      +.+..|..++.+++|++|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus       189 l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         189 VAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            66655666666666666666666665555566666666666666666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.4e-19  Score=148.44  Aligned_cols=216  Identities=20%  Similarity=0.249  Sum_probs=170.0

Q ss_pred             EeeCCCCCCCCCCccCcCCccEEeCCCCcccchhh-hcccCCCchhc--chhhcccccccCCCCCCcCCCcCCcEEEcCC
Q 047461           63 LHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWD-CVKHYSKLNQI--IHAACHKLIAKIPNPTLMPRLNKLVTLNLRG  139 (312)
Q Consensus        63 L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~l~~L~~l--~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  139 (312)
                      ++.++..++.+|... ..++++|+|++|.++.++. .+..+++|+.+  +.+.    +..++. ..+..++.++++....
T Consensus        16 v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~----l~~i~~-~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          16 TSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV----LARIDA-AAFTGLALLEQLDLSD   89 (284)
T ss_dssp             EECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CCEECT-TTTTTCTTCCEEECCS
T ss_pred             EEcCCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccc----cccccc-cccccccccccccccc
Confidence            345555677777643 3578999999999998884 58889999844  4444    222221 2566778899998775


Q ss_pred             CCcCccc-cccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcC
Q 047461          140 SKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSL  215 (312)
Q Consensus       140 ~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~  215 (312)
                      +.....+ +..+..+++|++|++++|......+...  ..+|+.+++.+|.++.+|. .+..+++|+.|++++|++.+..
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc
Confidence            5445555 5567889999999999976433222222  4789999999999999864 5678899999999999988777


Q ss_pred             chhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccc-hHhhccCCCcEEEecCCcCCc
Q 047461          216 PSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIP-ESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       216 ~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~-~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +..+..+++|+.+++++|.+.+..|..|.++++|+.|++++|+++.++ ..++.+++|++|++++|++..
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            788889999999999999998888999999999999999999999655 578899999999999998764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.2e-18  Score=144.36  Aligned_cols=195  Identities=18%  Similarity=0.144  Sum_probs=150.6

Q ss_pred             cCCccEEeCCCCcccchhhhcccCCCch--hcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcC
Q 047461           79 AEKLMLLEVPDSDIKRLWDCVKHYSKLN--QIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFL  156 (312)
Q Consensus        79 l~~L~~L~l~~~~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L  156 (312)
                      ...+.+++-++++++.+|..+.  ++++  +|+.+.    +..++. ..+..+++|++|++++|. ++.++. +..+++|
T Consensus         9 ~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~----i~~l~~-~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L   79 (266)
T d1p9ag_           9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL----LYTFSL-ATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVL   79 (266)
T ss_dssp             STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC----CSEEEG-GGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTC
T ss_pred             cCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCc----CCCcCH-HHhhcccccccccccccc-cccccc-ccccccc
Confidence            3344555666666776665442  3455  444444    222221 167788999999999998 456665 5689999


Q ss_pred             cEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchH-HHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCC
Q 047461          157 TKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGC  233 (312)
Q Consensus       157 ~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  233 (312)
                      ++|++++|. +...+...  .++|+.|+++++.+..++. .+..+.++++|++++|.+....+..+..+++++.+++++|
T Consensus        80 ~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          80 GTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccccccccc-ccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence            999999965 44444333  5789999999998887654 4567889999999999887776677778899999999999


Q ss_pred             CCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCC
Q 047461          234 SNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       234 ~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                      .+.+..+..+..+++|++|++++|+|+.+|+.+..+++|+.|+|++|++.
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            88877778888999999999999999999998889999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=3.7e-17  Score=132.00  Aligned_cols=186  Identities=21%  Similarity=0.258  Sum_probs=123.7

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL  137 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  137 (312)
                      .+|++|++.+|.+++++....+++|++|++++|.+..+.                            .+..+++++++++
T Consensus        41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~----------------------------~l~~l~~l~~l~~   92 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA----------------------------PLKNLTKITELEL   92 (227)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG----------------------------GGTTCCSCCEEEC
T ss_pred             CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc----------------------------ccccccccccccc
Confidence            456666666666666654446666666666666554321                            2445567777777


Q ss_pred             CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCch
Q 047461          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPS  217 (312)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~  217 (312)
                      ++|. .+.++. +.++++|+.++++++......+......++.+.+.++.+..... +..+++|++|++++|.+....  
T Consensus        93 ~~n~-~~~i~~-l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~--  167 (227)
T d1h6ua2          93 SGNP-LKNVSA-IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT--  167 (227)
T ss_dssp             CSCC-CSCCGG-GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG--
T ss_pred             cccc-cccccc-ccccccccccccccccccccchhccccchhhhhchhhhhchhhh-hccccccccccccccccccch--
Confidence            7776 334433 66777778887777543332221224567777777776665433 456778888888888764432  


Q ss_pred             hhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecC
Q 047461          218 SLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSY  279 (312)
Q Consensus       218 ~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~  279 (312)
                      .++++++|+.|++++|.+.+ ++ .++++++|++|++++|+++.++. +..+++|++|++++
T Consensus       168 ~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         168 PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            26788888999988876543 44 36788889999999988887764 77888898888863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=4.3e-16  Score=124.03  Aligned_cols=143  Identities=25%  Similarity=0.228  Sum_probs=86.0

Q ss_pred             CCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEec
Q 047461          128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDL  206 (312)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l  206 (312)
                      .+++|++|++++|.+ ..+++ +..+++|++|++++| .+..+|... .++|+.+++.+|.+..++ .+..+++++.+++
T Consensus        66 ~l~~L~~L~L~~n~i-~~l~~-~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~  141 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKL-TDIKP-LANLKNLGWLFLDEN-KVKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL  141 (210)
T ss_dssp             GCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEECCSS-CCCCGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEEC
T ss_pred             hCCCCCEEeCCCccc-cCccc-cccCccccccccccc-cccccccccccccccccccccccccccc-ccccccccccccc
Confidence            344555555555542 22222 344555555555553 233333322 345555555555555543 3556677888888


Q ss_pred             CCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecC
Q 047461          207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSY  279 (312)
Q Consensus       207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~  279 (312)
                      ++|.+.+.  ..+..+++|+.+++++|.+.+ ++ .+.++++|++|++++|.++.++ .+..+++|++|+|++
T Consensus       142 ~~n~l~~~--~~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         142 GNNKITDI--TVLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccc--ccccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            77765432  235667788888888876654 33 3667888888888888888775 477788888888764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=7.1e-16  Score=124.30  Aligned_cols=189  Identities=17%  Similarity=0.186  Sum_probs=124.6

Q ss_pred             hhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccC
Q 047461           24 TFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHY  102 (312)
Q Consensus        24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l  102 (312)
                      .++.+.+|+.|.+.+|.+        ....++.. ++|++|++++|.+..+.+...++.++.+++++|.++.++ .+   
T Consensus        36 ~~~~l~~L~~L~l~~~~i--------~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l---  103 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGV--------TTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AI---  103 (227)
T ss_dssp             CHHHHHTCCEEECTTSCC--------CCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GG---
T ss_pred             CHHHcCCcCEEECCCCCC--------CcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccc-cc---
Confidence            445678999999999764        22345666 999999999999988877668999999999998776542 22   


Q ss_pred             CCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEE
Q 047461          103 SKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLF  182 (312)
Q Consensus       103 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~  182 (312)
                                              +.+++|+.+.++++.... .+ .+...+.++.+.++.+......+....++++.|+
T Consensus       104 ------------------------~~l~~L~~l~l~~~~~~~-~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~  157 (227)
T d1h6ua2         104 ------------------------AGLQSIKTLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS  157 (227)
T ss_dssp             ------------------------TTCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEE
T ss_pred             ------------------------cccccccccccccccccc-cc-hhccccchhhhhchhhhhchhhhhcccccccccc
Confidence                                    334455556655554222 11 1334555666666554332222222245666666


Q ss_pred             cCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEecc
Q 047461          183 LRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLA  255 (312)
Q Consensus       183 l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~  255 (312)
                      +.+|.++..+. ++++++|+.|++++|++.+ ++. ++.+++|++|++++|++. .++ .++++++|+.|+++
T Consensus       158 l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         158 IGNAQVSDLTP-LANLSKLTTLKADDNKISD-ISP-LASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEE
T ss_pred             ccccccccchh-hcccccceecccCCCccCC-Chh-hcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEee
Confidence            66666665443 5677888888888887544 443 677888888888887654 344 36788888888875

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=3.2e-15  Score=118.89  Aligned_cols=163  Identities=20%  Similarity=0.211  Sum_probs=110.9

Q ss_pred             CCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEc
Q 047461           58 AEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNL  137 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  137 (312)
                      .+|++|+++++.++.++....+++|++|++++|.++.++                            .++.+++|++|++
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~----------------------------~~~~l~~L~~L~l   97 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK----------------------------PLANLKNLGWLFL   97 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG----------------------------GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc----------------------------ccccCcccccccc
Confidence            456666666666666655445666667777666555332                            2345567777888


Q ss_pred             CCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCc
Q 047461          138 RGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLP  216 (312)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~  216 (312)
                      ++|. ...++. +..+++|+.|++++|. ...++... .+.++.+++..|.+++.+ ....+++|+.+++++|++.+ ++
T Consensus        98 ~~n~-i~~l~~-l~~l~~L~~L~l~~~~-~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~-i~  172 (210)
T d1h6ta2          98 DENK-VKDLSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISD-IV  172 (210)
T ss_dssp             CSSC-CCCGGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG
T ss_pred             cccc-cccccc-cccccccccccccccc-ccccccccccccccccccccccccccc-cccccccccccccccccccc-cc
Confidence            7776 344553 6677778888887754 33344333 467788888888777654 35667889999999887654 33


Q ss_pred             hhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          217 SSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       217 ~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      . ++++++|++|++++|.+. .++ .+.++++|+.|++++
T Consensus       173 ~-l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         173 P-LAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             G-GTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             c-ccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            3 778889999999888654 455 578889999998863

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.4e-15  Score=118.65  Aligned_cols=157  Identities=19%  Similarity=0.251  Sum_probs=117.7

Q ss_pred             CCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEec
Q 047461          128 RLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDL  206 (312)
Q Consensus       128 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l  206 (312)
                      .++++++|++++|. ...+. .+..+++|++|++++| .+..+++.. .++|+.|++++|.+..++. ++.+++|+.|++
T Consensus        38 ~l~~l~~L~l~~~~-i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLG-IKSID-GVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCC-CCCcc-ccccCCCcCcCccccc-cccCcccccCCcccccccccccccccccc-cccccccccccc
Confidence            45678888888887 44443 3677888889998885 455555444 5788899998888887764 678889999999


Q ss_pred             CCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCccc
Q 047461          207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVEDTL  286 (312)
Q Consensus       207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~~~  286 (312)
                      ++|.....  ..+..+++|+.+++++|.+. .++ .+..+++|+.|++.+|+++.++. ++++++|++|++++|++.+-.
T Consensus       114 ~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~~-~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         114 FNNQITDI--DPLKNLTNLNRLELSSNTIS-DIS-ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CSSCCCCC--GGGTTCTTCSEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccc--cccchhhhhHHhhhhhhhhc-ccc-cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc
Confidence            88776543  23677889999999888754 343 57788999999999999887754 788899999999999887644


Q ss_pred             cccccCC
Q 047461          287 RIQHTNH  293 (312)
Q Consensus       287 ~~~~~~~  293 (312)
                      .+..+++
T Consensus       189 ~l~~L~~  195 (199)
T d2omxa2         189 VLAKLTN  195 (199)
T ss_dssp             GGGGCTT
T ss_pred             cccCCCC
Confidence            4444333

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4e-15  Score=117.28  Aligned_cols=93  Identities=22%  Similarity=0.262  Sum_probs=59.2

Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      .|+.++++++....++ .+..+++|+.|++++|++.. ++ .+..+++++.|++.+|.+.+ ++ .++++++|+.|++++
T Consensus       107 ~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~  181 (199)
T d2omxa2         107 NLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISS  181 (199)
T ss_dssp             TCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCS
T ss_pred             cccccccccccccccc-ccchhhhhHHhhhhhhhhcc-cc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCC
Confidence            4444444444443332 24456777777777776533 33 36677778888887776544 33 366788888888888


Q ss_pred             CCCcccchHhhccCCCcEE
Q 047461          257 TNIERIPESIIQLFVSGYL  275 (312)
Q Consensus       257 n~l~~~~~~l~~~~~L~~L  275 (312)
                      |+++.++ .+.++++|+.|
T Consensus       182 N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         182 NKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             SCCCCCG-GGGGCTTCSEE
T ss_pred             CCCCCCc-cccCCCCCCcC
Confidence            8887765 36777777765

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.7e-14  Score=120.02  Aligned_cols=200  Identities=23%  Similarity=0.267  Sum_probs=121.9

Q ss_pred             CcCCccEEeCCCCcccc--hhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcc--ccccccCC
Q 047461           78 SAEKLMLLEVPDSDIKR--LWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKS--LPSGIFNL  153 (312)
Q Consensus        78 ~l~~L~~L~l~~~~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~~  153 (312)
                      ....|++|+++++.+..  +...+..+++|+.|....+. .......  .++.+++|++|++++|...+.  +......+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~--~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVN--TLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHH--HHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHH--HHhcCCCCcCccccccccccccccchhhHHH
Confidence            33455556665555442  22334455555544333321 1111112  455677888888888754432  22223457


Q ss_pred             CcCcEEeccCCCCCCCC--Cc-cc--cCCCCeEEcCCc--ccc--cchHHHHhcCCCCEEecCCCC-CCCcCchhhhcCC
Q 047461          154 EFLTKLDLSGCSKLKRL--PE-IS--SGNISWLFLRGI--AIE--ELPSSIERLLRLGYLDLSDCK-RLKSLPSSLYRLK  223 (312)
Q Consensus       154 ~~L~~L~l~~~~~l~~~--p~-~~--~~~L~~L~l~~~--~l~--~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~  223 (312)
                      ++|++|++++|..+..-  .. ..  .+.|+.|++.++  .++  .+......+++|++|++++|. +.+.....+..++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            88888888887655421  11 11  357888888875  344  355556678899999998875 4445666778888


Q ss_pred             CCCeEeccCC-CCCCcchhhhhCCCCCcEEeccCCCCc--ccchHhhccCCCcEEEecCCcCCc
Q 047461          224 SLGVLSLCGC-SNLQRLPECLGQLSSPITFNLAKTNIE--RIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       224 ~L~~L~l~~~-~~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +|++|++++| .+.+.....+..+++|+.|+++++ ++  .+......+|+|+   +..+.+++
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~  260 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTT  260 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCC
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCC
Confidence            9999999987 455566667788899999999887 44  3434445566665   45555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.7e-14  Score=115.94  Aligned_cols=195  Identities=19%  Similarity=0.256  Sum_probs=120.5

Q ss_pred             CCccEEeeCCCCCCCCCCc-c-CcCCccEEeCCCCcccchhhhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEE
Q 047461           58 AEVKYLHWHGYPLKSLPSN-L-SAEKLMLLEVPDSDIKRLWDCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTL  135 (312)
Q Consensus        58 ~~L~~L~l~~~~~~~~~~~-~-~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L  135 (312)
                      .++++|++++|.++.++.. + ++++|++|++++|.+...                        ++ +..+..++.++++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~------------------------i~-~~~f~~l~~l~~l   83 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV------------------------IE-ADVFSNLPKLHEI   83 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCE------------------------EC-SSSEESCTTCCEE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccce------------------------ee-ccccccccccccc
Confidence            3455555555555555442 2 455555555555544321                        11 1156677888998


Q ss_pred             EcCC-CCcCccccccccCCCcCcEEeccCCCCCCCCCccc----cCCCCeEEcCCcccccchH-HHHhc-CCCCEEecCC
Q 047461          136 NLRG-SKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS----SGNISWLFLRGIAIEELPS-SIERL-LRLGYLDLSD  208 (312)
Q Consensus       136 ~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~----~~~L~~L~l~~~~l~~l~~-~~~~l-~~L~~L~l~~  208 (312)
                      .+.. +.+....+..+.++++|+++++++|. +...+...    ...+..+...++.+..++. .+..+ ..++.+++.+
T Consensus        84 ~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~  162 (242)
T d1xwdc1          84 RIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  162 (242)
T ss_dssp             EEECCTTCCEECTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             cccccccccccccccccccccccccccchhh-hcccccccccccccccccccccccccccccccccccccccceeeeccc
Confidence            8765 44444455667889999999999964 44444322    2344455556667776653 33333 4788899998


Q ss_pred             CCCCCcCchhhhcCCCCCeEeccCCCCCCcch-hhhhCCCCCcEEeccCCCCcccch-HhhccCCCcEEEecC
Q 047461          209 CKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLP-ECLGQLSSPITFNLAKTNIERIPE-SIIQLFVSGYLLLSY  279 (312)
Q Consensus       209 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~-~l~~~~~L~~L~l~~  279 (312)
                      |++.. ++......++++.+....++....+| ..|.++++|+.|++++|+++.+|. .+..++.|+++++..
T Consensus       163 n~l~~-i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         163 NGIQE-IHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             SCCCE-ECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccc-cccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            87654 44445566676666544444445554 457889999999999999997775 355666666655543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.53  E-value=1.5e-12  Score=110.86  Aligned_cols=230  Identities=22%  Similarity=0.214  Sum_probs=125.3

Q ss_pred             CCCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchh
Q 047461           28 MPKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQ  107 (312)
Q Consensus        28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~  107 (312)
                      .++|++|++++|.+.       .+|..+  .+|+.|+++++.+..++..  .+.|++|++++|.+..+|. +..+++|+.
T Consensus        57 ~~~L~~L~Ls~N~l~-------~lp~~~--~~L~~L~l~~n~l~~l~~l--p~~L~~L~L~~n~l~~lp~-~~~l~~L~~  124 (353)
T d1jl5a_          57 PPHLESLVASCNSLT-------ELPELP--QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEKLPE-LQNSSFLKI  124 (353)
T ss_dssp             CTTCSEEECCSSCCS-------SCCCCC--TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSSCCC-CTTCTTCCE
T ss_pred             CCCCCEEECCCCCCc-------ccccch--hhhhhhhhhhcccchhhhh--ccccccccccccccccccc-hhhhcccee
Confidence            468888888886641       222221  4677777777776666542  2357777777777766653 345566663


Q ss_pred             cch--hhcccc---------------cccCCCCCCcCCCcCCcEEEcCCCCcCc-------------------ccccccc
Q 047461          108 IIH--AACHKL---------------IAKIPNPTLMPRLNKLVTLNLRGSKSLK-------------------SLPSGIF  151 (312)
Q Consensus       108 l~~--~~~~~~---------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------------------~~~~~l~  151 (312)
                      +..  +.....               .....  ..++.++.++.+.+.++....                   .++ ...
T Consensus       125 L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~  201 (353)
T d1jl5a_         125 IDVDNNSLKKLPDLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQ  201 (353)
T ss_dssp             EECCSSCCSCCCCCCTTCCEEECCSSCCSSC--CCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCT
T ss_pred             eccccccccccccccccccchhhcccccccc--ccccccccceecccccccccccccccccccccccccccccccc-ccc
Confidence            322  111000               00011  134455666677666654211                   111 233


Q ss_pred             CCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCC----------------cC
Q 047461          152 NLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLK----------------SL  215 (312)
Q Consensus       152 ~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~----------------~~  215 (312)
                      .++.++.++++.|. ...++... .++..+.+..+.+...+..   ..++...++..+...+                .+
T Consensus       202 ~l~~L~~l~l~~n~-~~~~~~~~-~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~  276 (353)
T d1jl5a_         202 NLPFLTTIYADNNL-LKTLPDLP-PSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI  276 (353)
T ss_dssp             TCTTCCEEECCSSC-CSSCCSCC-TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCC
T ss_pred             cccccccccccccc-cccccccc-ccccccccccccccccccc---cccccccccccccccccccccchhcccccccCcc
Confidence            45666666666643 22233222 3455555555444432211   1122233322221110                11


Q ss_pred             chhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          216 PSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       216 ~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      ......+++|++|++++|.+. .+|.   .+++|+.|++++|+|+.+|+.   +++|++|++++|++..
T Consensus       277 ~~~~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~L~~  338 (353)
T d1jl5a_         277 RSLCDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNPLRE  338 (353)
T ss_dssp             SEECCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS
T ss_pred             ccccccCCCCCEEECCCCccC-cccc---ccCCCCEEECCCCcCCccccc---cCCCCEEECcCCcCCC
Confidence            111223578999999998764 5664   467899999999999988763   5689999999998764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.50  E-value=6.4e-14  Score=109.61  Aligned_cols=126  Identities=20%  Similarity=0.168  Sum_probs=77.0

Q ss_pred             CcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc---cCCCCeEEcCCcccccch-HHHHhcCCCCEEecC
Q 047461          132 LVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS---SGNISWLFLRGIAIEELP-SSIERLLRLGYLDLS  207 (312)
Q Consensus       132 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~---~~~L~~L~l~~~~l~~l~-~~~~~l~~L~~L~l~  207 (312)
                      .++++.+++. ...+|+.+  .+.+++|++++|......+...   .++|+.|++++|.+..++ ..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~-L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRG-LKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSC-CSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCC-cCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            4567777766 55667654  2567777777754333232221   356666666666666544 345556666666666


Q ss_pred             CCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          208 DCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       208 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      +|++....+..|.++++|++|++++|.+.+-.+..|..+++|++|++++|.+.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            66665555555666666666666666655555555666666666666666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=8.4e-14  Score=112.93  Aligned_cols=190  Identities=13%  Similarity=0.065  Sum_probs=106.3

Q ss_pred             CCCcEEEeeccccccccccccccC-CCCCC-CCccEEeeCCCCCCC-CCCc-c-CcCCccEEeCCC-CcccchhhhcccC
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYL-QDPGF-AEVKYLHWHGYPLKS-LPSN-L-SAEKLMLLEVPD-SDIKRLWDCVKHY  102 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~-~~~~-~-~l~~L~~L~l~~-~~~~~~~~~~~~l  102 (312)
                      +++++|+++++.+     .  .++ ..+.. ++|++|++++|.+.. ++.. + .++.++++.+.. +.+...+.     
T Consensus        29 ~~l~~L~Ls~n~i-----~--~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-----   96 (242)
T d1xwdc1          29 RNAIELRFVLTKL-----R--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-----   96 (242)
T ss_dssp             SCCSEEEEESCCC-----C--EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT-----
T ss_pred             CCCCEEECcCCcC-----C--ccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc-----
Confidence            4899999999775     1  222 23455 899999999998654 3432 2 677788877654 33433221     


Q ss_pred             CCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccc--cccCCCcCcEEeccCCCCCCCCCccc----cC
Q 047461          103 SKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPS--GIFNLEFLTKLDLSGCSKLKRLPEIS----SG  176 (312)
Q Consensus       103 ~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~l~~~p~~~----~~  176 (312)
                                         .  .+..+++|+++++++|.+. ..+.  .+..+..+..+.... ..+..++...    ..
T Consensus        97 -------------------~--~~~~l~~L~~l~l~~~~l~-~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~  153 (242)
T d1xwdc1          97 -------------------E--AFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSF  153 (242)
T ss_dssp             -------------------T--SEECCTTCCEEEEESCCCC-SCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBS
T ss_pred             -------------------c--cccccccccccccchhhhc-ccccccccccccccccccccc-cccccccccccccccc
Confidence                               1  4455666777777666532 2222  112223333333333 2333222211    13


Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEe-cCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchh-hhhCCCCCcEEec
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLD-LSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPE-CLGQLSSPITFNL  254 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~-l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l  254 (312)
                      .++.+++.+|+++.++.......++.++. +.+|++...-+..+..+++|+.|++++|.+. .+|. .+.+++.|+.+++
T Consensus       154 ~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         154 ESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARST  232 (242)
T ss_dssp             SCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTCCEEESSSE
T ss_pred             cceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCCcccccCcC
Confidence            56677777777777766555555655554 4555544333345677888888888887755 3433 3444444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-14  Score=120.63  Aligned_cols=159  Identities=19%  Similarity=0.186  Sum_probs=119.0

Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCC--Cccc--cCCCCeEEcCCc-cccc--chHHHHh
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRL--PEIS--SGNISWLFLRGI-AIEE--LPSSIER  197 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~--p~~~--~~~L~~L~l~~~-~l~~--l~~~~~~  197 (312)
                      .+..+++|++|++++|.+....+..+..+++|++|++++|..+++.  ....  .++|++|++++| .+++  +...+..
T Consensus        66 l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~  145 (284)
T d2astb2          66 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH  145 (284)
T ss_dssp             HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred             HHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcc
Confidence            4567889999999999876666777888999999999998766532  1111  478999999986 5553  3344444


Q ss_pred             -cCCCCEEecCCCC--CCC-cCchhhhcCCCCCeEeccCCC-CCCcchhhhhCCCCCcEEeccCC-CCc-ccchHhhccC
Q 047461          198 -LLRLGYLDLSDCK--RLK-SLPSSLYRLKSLGVLSLCGCS-NLQRLPECLGQLSSPITFNLAKT-NIE-RIPESIIQLF  270 (312)
Q Consensus       198 -l~~L~~L~l~~n~--~~~-~~~~~l~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n-~l~-~~~~~l~~~~  270 (312)
                       .++|+.|+++++.  +.. .+......+++|++|++++|. +.+..+..+.++++|++|++++| .++ .....+++++
T Consensus       146 ~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~  225 (284)
T d2astb2         146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP  225 (284)
T ss_dssp             SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCT
T ss_pred             cccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCC
Confidence             4689999998763  222 233345678999999999885 55667778889999999999996 476 4445678899


Q ss_pred             CCcEEEecCCcCCc
Q 047461          271 VSGYLLLSYGIVED  284 (312)
Q Consensus       271 ~L~~L~l~~n~~~~  284 (312)
                      +|+.|++++| +.+
T Consensus       226 ~L~~L~l~~~-~~d  238 (284)
T d2astb2         226 TLKTLQVFGI-VPD  238 (284)
T ss_dssp             TCCEEECTTS-SCT
T ss_pred             CCCEEeeeCC-CCH
Confidence            9999999998 443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.49  E-value=1.3e-13  Score=99.58  Aligned_cols=103  Identities=20%  Similarity=0.191  Sum_probs=83.3

Q ss_pred             CeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCC
Q 047461          179 SWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTN  258 (312)
Q Consensus       179 ~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~  258 (312)
                      |+|++++|+++.++. ++.+++|++|++++|++. .+|..++.+++|++|++++|.+. .+| .+..+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCc
Confidence            567888888888764 678889999999998864 56777888999999999987765 454 47888999999999999


Q ss_pred             Ccccc--hHhhccCCCcEEEecCCcCCcc
Q 047461          259 IERIP--ESIIQLFVSGYLLLSYGIVEDT  285 (312)
Q Consensus       259 l~~~~--~~l~~~~~L~~L~l~~n~~~~~  285 (312)
                      ++.++  ..+..+++|+.|++++|++.+.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            98665  4578889999999999988653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.4e-14  Score=110.02  Aligned_cols=123  Identities=18%  Similarity=0.092  Sum_probs=52.5

Q ss_pred             CCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEe
Q 047461          152 NLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLS  229 (312)
Q Consensus       152 ~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  229 (312)
                      +..++++|++++| .+..++...  ..+|+.|++++|.+++++ .+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus        16 n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          16 NAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             CTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCcCcEEECCCC-CCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            4445555555553 233333221  234455555555444442 233444455555555444333222333444455555


Q ss_pred             ccCCCCCCcc-hhhhhCCCCCcEEeccCCCCcccch----HhhccCCCcEEE
Q 047461          230 LCGCSNLQRL-PECLGQLSSPITFNLAKTNIERIPE----SIIQLFVSGYLL  276 (312)
Q Consensus       230 l~~~~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~~----~l~~~~~L~~L~  276 (312)
                      +++|.+...- ...+..+++|+.|++++|+++..|.    .+..+|+|++||
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            5444432210 1233444445555555444443332    234444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.47  E-value=9e-14  Score=108.75  Aligned_cols=106  Identities=24%  Similarity=0.157  Sum_probs=57.3

Q ss_pred             CCcEEEcCCCCcCccc-cccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchH-HHHhcCCCCEEec
Q 047461          131 KLVTLNLRGSKSLKSL-PSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPS-SIERLLRLGYLDL  206 (312)
Q Consensus       131 ~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~-~~~~l~~L~~L~l  206 (312)
                      .+++|++++|.+.... +..+..+++|++|++++|......+...  .+.|+.|++++|+++.++. .+.++++|++|+|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L  109 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCccccccc
Confidence            5666666666643333 2234456666666666644332222211  3456666666666665543 3455666666666


Q ss_pred             CCCCCCCcCchhhhcCCCCCeEeccCCCCC
Q 047461          207 SDCKRLKSLPSSLYRLKSLGVLSLCGCSNL  236 (312)
Q Consensus       207 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~  236 (312)
                      ++|++.+..+..|..+++|+++++++|.+.
T Consensus       110 ~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_         110 YDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCccccccCHHHhcCCcccccccccccccc
Confidence            666655555555556666666666665443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=104.36  Aligned_cols=105  Identities=19%  Similarity=0.112  Sum_probs=46.9

Q ss_pred             CCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          177 NISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       177 ~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      ++++|++++|+++.++.....+++|++|++++|++.. ++ .+..+++|++|++++|.+.+-.+..+..+++|++|++++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            4445555555555444333344445555555544332 11 234444555555554443332222233444555555555


Q ss_pred             CCCcccch--HhhccCCCcEEEecCCcCC
Q 047461          257 TNIERIPE--SIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       257 n~l~~~~~--~l~~~~~L~~L~l~~n~~~  283 (312)
                      |+++.+++  .+..+++|++|++++|++.
T Consensus        97 N~i~~~~~l~~l~~l~~L~~L~l~~N~i~  125 (162)
T d1a9na_          97 NSLVELGDLDPLASLKSLTYLCILRNPVT  125 (162)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred             ccccccccccccccccccchhhcCCCccc
Confidence            55443332  3444455555555555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.44  E-value=2.1e-14  Score=122.88  Aligned_cols=244  Identities=14%  Similarity=0.059  Sum_probs=152.8

Q ss_pred             cccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCCCCc------------cCcCCc
Q 047461           16 KELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSLPSN------------LSAEKL   82 (312)
Q Consensus        16 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~------------~~l~~L   82 (312)
                      +........+.....|+.|++++|.++...  ...+...+.. ++|+.++++++........            ...++|
T Consensus        18 e~~~~l~~~L~~~~~l~~L~Ls~n~i~~~~--~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L   95 (344)
T d2ca6a1          18 EDEKSVFAVLLEDDSVKEIVLSGNTIGTEA--ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL   95 (344)
T ss_dssp             HHHHTTSHHHHHCSCCCEEECTTSEECHHH--HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHHHhhCCCCCEEECcCCcCCHHH--HHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCc
Confidence            344445567788899999999998764332  1223334445 8899999987754332211            145778


Q ss_pred             cEEeCCCCcccchh-hhcccCCCchhcchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCcccc-------------c
Q 047461           83 MLLEVPDSDIKRLW-DCVKHYSKLNQIIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLP-------------S  148 (312)
Q Consensus        83 ~~L~l~~~~~~~~~-~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------~  148 (312)
                      +.|++++|.+.... ..+                     ..  .+...++|++|++++|.+.....             .
T Consensus        96 ~~L~L~~n~i~~~~~~~l---------------------~~--~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~  152 (344)
T d2ca6a1          96 HTVRLSDNAFGPTAQEPL---------------------ID--FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK  152 (344)
T ss_dssp             CEEECCSCCCCTTTHHHH---------------------HH--HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccch---------------------hh--hhcccccchheeccccccccccccccccccccccccc
Confidence            88888888765321 000                     00  22234467777777776421100             0


Q ss_pred             cccCCCcCcEEeccCCCCCCC-CCcc-----ccCCCCeEEcCCccccc------chHHHHhcCCCCEEecCCCCCCCc--
Q 047461          149 GIFNLEFLTKLDLSGCSKLKR-LPEI-----SSGNISWLFLRGIAIEE------LPSSIERLLRLGYLDLSDCKRLKS--  214 (312)
Q Consensus       149 ~l~~~~~L~~L~l~~~~~l~~-~p~~-----~~~~L~~L~l~~~~l~~------l~~~~~~l~~L~~L~l~~n~~~~~--  214 (312)
                      .....+.|+.+.++.+..... +...     ..+.++.+++.+|.++.      +...+..+++|+.|++++|.+...  
T Consensus       153 ~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  232 (344)
T d2ca6a1         153 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS  232 (344)
T ss_dssp             HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred             ccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccc
Confidence            012456677787777432111 0000     03578888888888764      122355678899999999876432  


Q ss_pred             --CchhhhcCCCCCeEeccCCCCCCcc----hhhhhC--CCCCcEEeccCCCCcc-----cchHhh-ccCCCcEEEecCC
Q 047461          215 --LPSSLYRLKSLGVLSLCGCSNLQRL----PECLGQ--LSSPITFNLAKTNIER-----IPESII-QLFVSGYLLLSYG  280 (312)
Q Consensus       215 --~~~~l~~l~~L~~L~l~~~~~~~~~----p~~~~~--l~~L~~L~l~~n~l~~-----~~~~l~-~~~~L~~L~l~~n  280 (312)
                        +...+..+++|++|++++|.+.+..    ...+..  ...|++|++++|.++.     +...+. .+++|++|++++|
T Consensus       233 ~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N  312 (344)
T d2ca6a1         233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN  312 (344)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             ccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence              4455678889999999999876543    333333  4679999999999872     334443 5789999999999


Q ss_pred             cCCc
Q 047461          281 IVED  284 (312)
Q Consensus       281 ~~~~  284 (312)
                      .+.+
T Consensus       313 ~~~~  316 (344)
T d2ca6a1         313 RFSE  316 (344)
T ss_dssp             BSCT
T ss_pred             cCCC
Confidence            9864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=1.6e-12  Score=93.72  Aligned_cols=98  Identities=20%  Similarity=0.129  Sum_probs=71.0

Q ss_pred             CCCCeEEcCCcccccchHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCc-chhhhhCCCCCcEEec
Q 047461          176 GNISWLFLRGIAIEELPSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQR-LPECLGQLSSPITFNL  254 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l  254 (312)
                      .+|++|++++|.++++|..++.+++|+.|++++|.+.+ ++ .++.+++|+.+++++|.+.+. ....+..+++|+.|++
T Consensus        20 ~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l   97 (124)
T d1dcea3          20 LLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL   97 (124)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCcchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEEC
Confidence            45666666666677777777788889999998887654 44 378888899999988876543 2356778889999999


Q ss_pred             cCCCCccc---ch-HhhccCCCcEE
Q 047461          255 AKTNIERI---PE-SIIQLFVSGYL  275 (312)
Q Consensus       255 ~~n~l~~~---~~-~l~~~~~L~~L  275 (312)
                      ++|+++..   +. ....+|+|+.+
T Consensus        98 ~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          98 QGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCcCCcCccHHHHHHHHCcCcceE
Confidence            99988733   22 34557777765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.40  E-value=1.1e-11  Score=105.36  Aligned_cols=226  Identities=15%  Similarity=0.109  Sum_probs=133.2

Q ss_pred             CCCcEEEeeccccccccccccccCCCCCCCCccEEeeCCCCCCCCCCccCcCCccEEeCCCCcccchhhhcccCCCchh-
Q 047461           29 PKLRFLKFYSSLFNGENKCKMSYLQDPGFAEVKYLHWHGYPLKSLPSNLSAEKLMLLEVPDSDIKRLWDCVKHYSKLNQ-  107 (312)
Q Consensus        29 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~L~~-  107 (312)
                      .++++|+++++.+       ..+|..  .++|++|++++|.++.+|..  +.+|+.|++.+|.++.++..   .+.|+. 
T Consensus        38 ~~l~~LdLs~~~L-------~~lp~~--~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGL-------SSLPEL--PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCC-------SCCCSC--CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEE
T ss_pred             cCCCEEEeCCCCC-------CCCCCC--CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh---ccccccc
Confidence            3688999988654       223321  16899999999999888864  46889999999888766432   134663 


Q ss_pred             -cchhhcccccccCCCCCCcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCc
Q 047461          108 -IIHAACHKLIAKIPNPTLMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGI  186 (312)
Q Consensus       108 -l~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~  186 (312)
                       ++.+.    +..++   .++.+++|++|+++++.. ...+.   ....+..+.+..+.............++.+++..+
T Consensus       104 ~L~~n~----l~~lp---~~~~l~~L~~L~l~~~~~-~~~~~---~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         104 GVSNNQ----LEKLP---ELQNSSFLKIIDVDNNSL-KKLPD---LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             ECCSSC----CSSCC---CCTTCTTCCEEECCSSCC-SCCCC---CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred             cccccc----ccccc---chhhhccceeeccccccc-ccccc---ccccccchhhccccccccccccccccceecccccc
Confidence             33333    34444   356778888888888763 33333   34456666665533222111111245566666555


Q ss_pred             cccc--------------------chHHHHhcCCCCEEecCCCCCCCcCchhhhc-----------------CCCCCeEe
Q 047461          187 AIEE--------------------LPSSIERLLRLGYLDLSDCKRLKSLPSSLYR-----------------LKSLGVLS  229 (312)
Q Consensus       187 ~l~~--------------------l~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-----------------l~~L~~L~  229 (312)
                      ....                    ++ ....++.++.+++++|.... ++.....                 ..++...+
T Consensus       173 ~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~l~~L~~l~l~~n~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~  250 (353)
T d1jl5a_         173 SLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPELPQSLTFLD  250 (353)
T ss_dssp             CCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            4332                    22 23457788999998875433 2221111                 11222222


Q ss_pred             ccCCCCC----------------CcchhhhhCCCCCcEEeccCCCCcccchHhhccCCCcEEEecCCcCCc
Q 047461          230 LCGCSNL----------------QRLPECLGQLSSPITFNLAKTNIERIPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       230 l~~~~~~----------------~~~p~~~~~l~~L~~L~l~~n~l~~~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                      +..+...                ..++.....+++|++|++++|+++.+|..   +++|+.|++++|.+..
T Consensus       251 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~  318 (353)
T d1jl5a_         251 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAE  318 (353)
T ss_dssp             CCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC
T ss_pred             cccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCc
Confidence            2221110                01111122357899999999999988863   6799999999998864

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.1e-14  Score=124.39  Aligned_cols=156  Identities=19%  Similarity=0.106  Sum_probs=82.7

Q ss_pred             CcCCcEEEcCCCCcCcc-----ccccccCCCcCcEEeccCCCCCCCCC----c-c-ccCCCCeEEcCCccccc-----ch
Q 047461          129 LNKLVTLNLRGSKSLKS-----LPSGIFNLEFLTKLDLSGCSKLKRLP----E-I-SSGNISWLFLRGIAIEE-----LP  192 (312)
Q Consensus       129 l~~L~~L~l~~~~~~~~-----~~~~l~~~~~L~~L~l~~~~~l~~~p----~-~-~~~~L~~L~l~~~~l~~-----l~  192 (312)
                      .+.++.+.+.+|.....     ..........++.+++++|.......    . . ..+.++.+++++|.++.     +.
T Consensus       225 ~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~  304 (460)
T d1z7xw1         225 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC  304 (460)
T ss_dssp             CTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHH
T ss_pred             cccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhh
Confidence            34556666665543211     12223345678888888864321100    0 0 03466777777776652     11


Q ss_pred             HHHH-hcCCCCEEecCCCCCCCcCch----hhhcCCCCCeEeccCCCCCCc----chhhhh-CCCCCcEEeccCCCCcc-
Q 047461          193 SSIE-RLLRLGYLDLSDCKRLKSLPS----SLYRLKSLGVLSLCGCSNLQR----LPECLG-QLSSPITFNLAKTNIER-  261 (312)
Q Consensus       193 ~~~~-~l~~L~~L~l~~n~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~----~p~~~~-~l~~L~~L~l~~n~l~~-  261 (312)
                      ..+. ....|+.+++++|.+......    .+...++|++|++++|.+.+.    +++.+. ..+.|++|++++|.|+. 
T Consensus       305 ~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~  384 (460)
T d1z7xw1         305 ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS  384 (460)
T ss_dssp             HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHH
T ss_pred             ccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChH
Confidence            1111 234577777777665443222    233445677777777665432    333333 34567777777777752 


Q ss_pred             ----cchHhhccCCCcEEEecCCcCCc
Q 047461          262 ----IPESIIQLFVSGYLLLSYGIVED  284 (312)
Q Consensus       262 ----~~~~l~~~~~L~~L~l~~n~~~~  284 (312)
                          +++.+..+++|++|+|++|++.+
T Consensus       385 ~~~~l~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         385 SCSSLAATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHHHHHHhcCCCCCEEECCCCcCCH
Confidence                33445566777777777776654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.25  E-value=3.4e-13  Score=105.79  Aligned_cols=142  Identities=19%  Similarity=0.108  Sum_probs=91.4

Q ss_pred             CcEEEcCCCC-cCccccccccCCCcCcEEeccCCCCCCCCCccc-cCCCCeEEcCCcccccchHHHHhcCCCCEEecCCC
Q 047461          132 LVTLNLRGSK-SLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS-SGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC  209 (312)
Q Consensus       132 L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~-~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  209 (312)
                      ++.+++++.. ....++..+..+++|++|++++|. +..++... .++|+.|++++|.+++++.....+++|++|++++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcccccCCccccChhhcccccccccccccccccccccccccc
Confidence            4445554421 133445556667777788777743 44555443 56777888877777777665555667888888887


Q ss_pred             CCCCcCchhhhcCCCCCeEeccCCCCCCcc-hhhhhCCCCCcEEeccCCCCcccc-h----------HhhccCCCcEEE
Q 047461          210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRL-PECLGQLSSPITFNLAKTNIERIP-E----------SIIQLFVSGYLL  276 (312)
Q Consensus       210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~-~----------~l~~~~~L~~L~  276 (312)
                      ++.. + ..+..+++|+.|++++|.+.... ...+..+++|+.|++++|+++..+ .          .+..+|+|+.||
T Consensus       104 ~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         104 QIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            7554 3 33667778888888877654321 245777888888888888765211 1          256778888775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.2e-11  Score=89.80  Aligned_cols=106  Identities=15%  Similarity=0.005  Sum_probs=72.3

Q ss_pred             CCeEEcCCcccccchHHHHhcCCCCEEecCCCC-CCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccC
Q 047461          178 ISWLFLRGIAIEELPSSIERLLRLGYLDLSDCK-RLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAK  256 (312)
Q Consensus       178 L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~  256 (312)
                      .+.++..++++.+.|..+..+++|++|++.+++ +...-+..|..+++|+.|++++|.+..-.+..|..+++|+.|++++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            344556666666666666667777777776554 4444445577777788888877776555566677777888888888


Q ss_pred             CCCcccchHhhccCCCcEEEecCCcCC
Q 047461          257 TNIERIPESIIQLFVSGYLLLSYGIVE  283 (312)
Q Consensus       257 n~l~~~~~~l~~~~~L~~L~l~~n~~~  283 (312)
                      |+|+.+|.......+|+.|+|++|++.
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCcccChhhhccccccccccCCCccc
Confidence            887777765555556778888877763

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.13  E-value=4.1e-13  Score=105.26  Aligned_cols=130  Identities=20%  Similarity=0.263  Sum_probs=98.1

Q ss_pred             CcCCCcCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccc--cCCCCeEEcCCcccccchHHHHhcCCCC
Q 047461          125 LMPRLNKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEIS--SGNISWLFLRGIAIEELPSSIERLLRLG  202 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~--~~~L~~L~l~~~~l~~l~~~~~~l~~L~  202 (312)
                      .+..+++|++|++++|. ...++ .+..+++|++|++++| .+..+|...  .+.|+.|++.+|.++.++. +..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLSG-IEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEEECCCHHH-HHHHHHSS
T ss_pred             HHhcccccceeECcccC-CCCcc-cccCCccccChhhccc-cccccccccccccccccccccccccccccc-cccccccc
Confidence            46667889999999988 44555 4778999999999985 456666543  3579999999999998854 77888999


Q ss_pred             EEecCCCCCCCcCc-hhhhcCCCCCeEeccCCCCCCcch----------hhhhCCCCCcEEeccCCCCc
Q 047461          203 YLDLSDCKRLKSLP-SSLYRLKSLGVLSLCGCSNLQRLP----------ECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       203 ~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~p----------~~~~~l~~L~~L~l~~n~l~  260 (312)
                      +|++++|++..... ..++.+++|+.|++++|.+....+          ..+..+++|+.||  +..|+
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~  185 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGT
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCC
Confidence            99999998755322 457889999999999986543221          1256789999987  44454

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.12  E-value=3.2e-11  Score=102.67  Aligned_cols=160  Identities=16%  Similarity=0.067  Sum_probs=115.2

Q ss_pred             CcCCCcCCcEEEcCCCCcCcc----ccccccCCCcCcEEeccCCCCCCC--------CCc-------cccCCCCeEEcCC
Q 047461          125 LMPRLNKLVTLNLRGSKSLKS----LPSGIFNLEFLTKLDLSGCSKLKR--------LPE-------ISSGNISWLFLRG  185 (312)
Q Consensus       125 ~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~l~~--------~p~-------~~~~~L~~L~l~~  185 (312)
                      .+..+++|++|++++|.+...    +...+...++|++|++++|.....        +..       ...+.++.+.+++
T Consensus        88 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~  167 (344)
T d2ca6a1          88 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR  167 (344)
T ss_dssp             HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred             HHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc
Confidence            445677899999999975443    334455678999999999752110        000       0135788999999


Q ss_pred             ccccc-----chHHHHhcCCCCEEecCCCCCCCc-----CchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcE
Q 047461          186 IAIEE-----LPSSIERLLRLGYLDLSDCKRLKS-----LPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPIT  251 (312)
Q Consensus       186 ~~l~~-----l~~~~~~l~~L~~L~l~~n~~~~~-----~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~  251 (312)
                      +.++.     +...+..+.+|+.|++++|.+...     +...+...++|+.|++++|.+...    +...+..+++|++
T Consensus       168 n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~  247 (344)
T d2ca6a1         168 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE  247 (344)
T ss_dssp             SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCE
T ss_pred             ccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchh
Confidence            87763     445567788999999999987542     234466788999999999876432    4566778999999


Q ss_pred             EeccCCCCcc-----cchHhhc--cCCCcEEEecCCcCCc
Q 047461          252 FNLAKTNIER-----IPESIIQ--LFVSGYLLLSYGIVED  284 (312)
Q Consensus       252 L~l~~n~l~~-----~~~~l~~--~~~L~~L~l~~n~~~~  284 (312)
                      |++++|.++.     +...+..  .+.|++|++++|.+..
T Consensus       248 L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             EECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            9999999972     2223333  3679999999999854

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.4e-11  Score=108.35  Aligned_cols=103  Identities=8%  Similarity=0.120  Sum_probs=68.9

Q ss_pred             cceEEEEeecCCccccCCCcchhcCCCCCcEEEeeccccccccccccccCCCCCC-CCccEEeeCCCCCCCC-----CCc
Q 047461            3 EKIEGMCLDMSKVKELHPNSNTFTKMPKLRFLKFYSSLFNGENKCKMSYLQDPGF-AEVKYLHWHGYPLKSL-----PSN   76 (312)
Q Consensus         3 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~-----~~~   76 (312)
                      -+++.+++...+..+.++ .+-+..++++++|++++|.++..+.  ..+...+.. ++|++|++++|.+...     ...
T Consensus         2 ~~l~~ld~~~~~i~~~~~-~~l~~~l~~l~~L~L~~~~i~~~~~--~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~   78 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARW-AELLPLLQQCQVVRLDDCGLTEARC--KDISSALRVNPALAELNLRSNELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEEESCCCCHHHH-HHHHHHHTTCSEEEEESSCCCHHHH--HHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHT
T ss_pred             CCCCEEEeeCCcCChHHH-HHHHHhCCCCCEEEeCCCCCCHHHH--HHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHH
Confidence            367888888777755444 3456788999999999987532211  112222334 7899999999987531     111


Q ss_pred             c--CcCCccEEeCCCCcccc-----hhhhcccCCCchhc
Q 047461           77 L--SAEKLMLLEVPDSDIKR-----LWDCVKHYSKLNQI  108 (312)
Q Consensus        77 ~--~l~~L~~L~l~~~~~~~-----~~~~~~~l~~L~~l  108 (312)
                      +  ....|++|++++|.++.     ++..+..+++|+.|
T Consensus        79 l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L  117 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL  117 (460)
T ss_dssp             TCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEE
T ss_pred             HhcCCCCCCEEECCCCCccccccccccchhhcccccccc
Confidence            1  23579999999999874     33456678888844

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=3.1e-09  Score=79.34  Aligned_cols=109  Identities=17%  Similarity=0.004  Sum_probs=61.4

Q ss_pred             cCCcEEEcCCCCcCccccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccccchHHHHhcCCCCEEecCCC
Q 047461          130 NKLVTLNLRGSKSLKSLPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIEELPSSIERLLRLGYLDLSDC  209 (312)
Q Consensus       130 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~~l~~~~~~l~~L~~L~l~~n  209 (312)
                      ...+.++.+++. ....|..+..+++|+.|++++++.+..++.                    ..+.++++|+.|++++|
T Consensus         8 ~~~~~l~c~~~~-~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~--------------------~~f~~l~~L~~L~Ls~N   66 (156)
T d2ifga3           8 HGSSGLRCTRDG-ALDSLHHLPGAENLTELYIENQQHLQHLEL--------------------RDLRGLGELRNLTIVKS   66 (156)
T ss_dssp             SSSSCEECCSSC-CCTTTTTSCSCSCCSEEECCSCSSCCEECG--------------------GGSCSCCCCSEEECCSS
T ss_pred             CCCCeEEecCCC-CccCcccccCccccCeeecCCCccccccCc--------------------hhhccccccCcceeecc
Confidence            345567777665 444555566666677777665444443332                    22445556666666666


Q ss_pred             CCCCcCchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCc
Q 047461          210 KRLKSLPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIE  260 (312)
Q Consensus       210 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~  260 (312)
                      ++....+..+..+++|++|++++|.+. .+|.......+|+.|++++|++.
T Consensus        67 ~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          67 GLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccCCcccccccccccccceeccCCCCc-ccChhhhccccccccccCCCccc
Confidence            655555555666666666666665544 33333223335666777766654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.8e-08  Score=73.78  Aligned_cols=86  Identities=15%  Similarity=-0.016  Sum_probs=56.0

Q ss_pred             chHHHHhcCCCCEEecCCCCCCCc--CchhhhcCCCCCeEeccCCCCCCcchhhhhCCCCCcEEeccCCCCccc-c----
Q 047461          191 LPSSIERLLRLGYLDLSDCKRLKS--LPSSLYRLKSLGVLSLCGCSNLQRLPECLGQLSSPITFNLAKTNIERI-P----  263 (312)
Q Consensus       191 l~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~l~~~-~----  263 (312)
                      ++.....+++|++|++++|++...  ++..+..+++|+.|++++|.+...-+..+.....|+.|++++|+++.. .    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            333445678888888888887653  344566778888888888776543332333455688888888887622 1    


Q ss_pred             ---hHhhccCCCcEEE
Q 047461          264 ---ESIIQLFVSGYLL  276 (312)
Q Consensus       264 ---~~l~~~~~L~~L~  276 (312)
                         ..+..+|+|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence               2345678888775

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.05  E-value=8.1e-06  Score=60.92  Aligned_cols=106  Identities=11%  Similarity=0.006  Sum_probs=70.5

Q ss_pred             CCCCeEEcCCc-ccc-----cchHHHHhcCCCCEEecCCCCCCC----cCchhhhcCCCCCeEeccCCCCCCc----chh
Q 047461          176 GNISWLFLRGI-AIE-----ELPSSIERLLRLGYLDLSDCKRLK----SLPSSLYRLKSLGVLSLCGCSNLQR----LPE  241 (312)
Q Consensus       176 ~~L~~L~l~~~-~l~-----~l~~~~~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~p~  241 (312)
                      +.|++|+++++ .++     .+-..+...++|++|++++|.+..    .+...+...++|++|++++|.+...    +..
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            35555555542 333     133345566778888888887653    2334556677899999988877643    344


Q ss_pred             hhhCCCCCcEEeccCCCCcc--------cchHhhccCCCcEEEecCCc
Q 047461          242 CLGQLSSPITFNLAKTNIER--------IPESIIQLFVSGYLLLSYGI  281 (312)
Q Consensus       242 ~~~~l~~L~~L~l~~n~l~~--------~~~~l~~~~~L~~L~l~~n~  281 (312)
                      .+...++|++|++++|.+..        +...+...++|+.|+++++.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            56667889999998886542        33455677899999988774

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=4.5e-06  Score=62.06  Aligned_cols=78  Identities=17%  Similarity=0.080  Sum_probs=53.9

Q ss_pred             CCCCeEEcCCcccccc---hHHHHhcCCCCEEecCCCCCCCcCchhhhcCCCCCeEeccCCCCCCcch-------hhhhC
Q 047461          176 GNISWLFLRGIAIEEL---PSSIERLLRLGYLDLSDCKRLKSLPSSLYRLKSLGVLSLCGCSNLQRLP-------ECLGQ  245 (312)
Q Consensus       176 ~~L~~L~l~~~~l~~l---~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~p-------~~~~~  245 (312)
                      +.|++|++++|.++.+   +..+..+++|+.|++++|.+...-+........|+.+++++|.+.....       ..+..
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            5677777777777654   3456778889999999888765433333345578889999887765432       33567


Q ss_pred             CCCCcEEe
Q 047461          246 LSSPITFN  253 (312)
Q Consensus       246 l~~L~~L~  253 (312)
                      +|+|+.||
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            88888886

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.83  E-value=2.6e-05  Score=58.08  Aligned_cols=110  Identities=17%  Similarity=0.113  Sum_probs=65.8

Q ss_pred             CCcCCcEEEcCCCC-cCcc----ccccccCCCcCcEEeccCCCCCCCCCccccCCCCeEEcCCcccc-----cchHHHHh
Q 047461          128 RLNKLVTLNLRGSK-SLKS----LPSGIFNLEFLTKLDLSGCSKLKRLPEISSGNISWLFLRGIAIE-----ELPSSIER  197 (312)
Q Consensus       128 ~l~~L~~L~l~~~~-~~~~----~~~~l~~~~~L~~L~l~~~~~l~~~p~~~~~~L~~L~l~~~~l~-----~l~~~~~~  197 (312)
                      +.+.|++|+++++. +...    +...+...++|+.|++++                      |.++     .+...+..
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~----------------------n~l~~~~~~~la~~L~~   70 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN----------------------TAISDSEARGLIELIET   70 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT----------------------SCCBHHHHTTHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccc----------------------cccchhHHHHHhhhhhh
Confidence            34577888887643 2221    222344445555555555                      4333     24445666


Q ss_pred             cCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCC-------cchhhhhCCCCCcEEeccCCCC
Q 047461          198 LLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQ-------RLPECLGQLSSPITFNLAKTNI  259 (312)
Q Consensus       198 l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~-------~~p~~~~~l~~L~~L~l~~n~l  259 (312)
                      .+.|++|++++|.+...    +...+...++|++|++++|....       .+...+...++|+.|+++.+..
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            77888888888876543    33355666788888887764321       2455566678888888876543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.63  E-value=6e-05  Score=55.90  Aligned_cols=106  Identities=11%  Similarity=0.053  Sum_probs=66.6

Q ss_pred             CCCeEEcCC-cccc-----cchHHHHhcCCCCEEecCCCCCCCc----CchhhhcCCCCCeEeccCCCCCCc----chhh
Q 047461          177 NISWLFLRG-IAIE-----ELPSSIERLLRLGYLDLSDCKRLKS----LPSSLYRLKSLGVLSLCGCSNLQR----LPEC  242 (312)
Q Consensus       177 ~L~~L~l~~-~~l~-----~l~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~----~p~~  242 (312)
                      .|+.|++.+ +.++     .+-..+...++|++|++++|.+...    +...+...++++.+++++|.+...    +...
T Consensus        18 ~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~   97 (166)
T d1io0a_          18 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA   97 (166)
T ss_dssp             TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred             CCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHH
Confidence            455555544 2333     2334455667788888888766442    333455667888888888766543    3455


Q ss_pred             hhCCCCCcEEecc--CCCCc-----ccchHhhccCCCcEEEecCCcC
Q 047461          243 LGQLSSPITFNLA--KTNIE-----RIPESIIQLFVSGYLLLSYGIV  282 (312)
Q Consensus       243 ~~~l~~L~~L~l~--~n~l~-----~~~~~l~~~~~L~~L~l~~n~~  282 (312)
                      +...++|+.++++  .|.+.     .+...+...+.|+.|+++.+..
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            6667888876664  45564     2444566788999999877643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.64  E-value=0.0022  Score=46.99  Aligned_cols=90  Identities=13%  Similarity=0.043  Sum_probs=65.0

Q ss_pred             HHhcCCCCEEecCCCC-CCC----cCchhhhcCCCCCeEeccCCCCCCc----chhhhhCCCCCcEEeccCCCCc-----
Q 047461          195 IERLLRLGYLDLSDCK-RLK----SLPSSLYRLKSLGVLSLCGCSNLQR----LPECLGQLSSPITFNLAKTNIE-----  260 (312)
Q Consensus       195 ~~~l~~L~~L~l~~n~-~~~----~~~~~l~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~l~-----  260 (312)
                      ..+.++|++|++++++ +..    .+...+...+.|++|++++|.+...    +...+...++++.++++.|.++     
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            3466899999999744 332    2344566788999999999987654    4455667899999999999986     


Q ss_pred             ccchHhhccCCCcEEEec--CCcCCc
Q 047461          261 RIPESIIQLFVSGYLLLS--YGIVED  284 (312)
Q Consensus       261 ~~~~~l~~~~~L~~L~l~--~n~~~~  284 (312)
                      .+...+...++|+.++|+  +|++.+
T Consensus        93 ~l~~~l~~~~~L~~l~L~l~~n~i~~  118 (166)
T d1io0a_          93 ALVEALQSNTSLIELRIDNQSQPLGN  118 (166)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred             HHHHHHHhCccccEEeeccCCCcCcH
Confidence            233456778899976665  555543