Citrus Sinensis ID: 047467

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKETQPRWWETPVDEHNLQELL
Secondary Structure (PSIPRED)
ccccccccEEEEEccccccccEEccccccHHHHHHHHHHHHHcccEEEEEEccccccEEcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEcccccHHHHcHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHc
Coil and Loop (DISEMBL)
KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFsqsgkpytfghpsVEAVANRflgmnhlpndnihSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRgketqprwwetpvdehnlqell
Flexible Loop (DISEMBL)
kktkwrkkietkknekederlitfskrrsgiyKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILTqmrrgketqprwwetpvdehnlqell
Low Complexity Region (SEG)
kktkwrkkietkknekedeRLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNelrrqleeekeqekILTQMRRGKETQPRWWETPVDEHNLQELL
Disordered region (IsUnstruct)
*********************ITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRIN**************************************************
Disordered Region (DISOPRED)
*****RK**ETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFL***********************ELN*********************************WETPVDEHNLQELL
Disordered Region (DISEMBL)
KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELR***********************PRWWETPVDEHNLQELL
Disordered Region (DISPRO)
*******KIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRRGKETQPRWWETPVDEHNLQ*LL
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNIHSLVVGHRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRRGKETQPRWWETPVDEHNLQELL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q9FKK2	299	Agamous-like MADS-box pro	yes	no	0.993	0.484	0.428	9e-25
Q4PSU4	264	Agamous-like MADS-box pro	no	no	0.945	0.522	0.408	2e-24
O82743	219	Agamous-like MADS-box pro	no	no	0.712	0.474	0.356	2e-11
Q39295	264	Agamous-like MADS-box pro	N/A	no	0.458	0.253	0.477	1e-10
Q9M2K8	256	Agamous-like MADS-box pro	no	no	0.465	0.265	0.441	2e-10
Q6VAM4	159	MADS-box transcription fa	no	no	0.458	0.421	0.417	3e-10
Q38847	268	Agamous-like MADS-box pro	no	no	0.458	0.25	0.462	3e-10
Q38838	221	Agamous-like MADS-box pro	no	no	0.712	0.470	0.368	4e-10
Q40704	236	MADS-box transcription fa	no	no	0.678	0.419	0.365	4e-10
Q40168	248	Floral homeotic protein A	N/A	no	0.458	0.270	0.462	4e-10

>sp|Q9FKK2|AGL62_ARATH Agamous-like MADS-box protein AGL62 OS=Arabidopsis thaliana GN=AGL62 PE=1 SV=1

 Score =  112 bits (280), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 90/147 (61%), Gaps = 2/147 (1%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           KK+K R+KIE  K + E    +TFSKRRSG++KKA EL TL G+E+A+VVFS   K ++F
Sbjct: 3   KKSKGRQKIEMVKMKNESNLQVTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSF 62

Query: 61  GHPSVEAVANRFLGMNHLP--NDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKI 118
           GHP+V++V +RF+  N LP    N   L    R   + +LN    ++  QLE EK++   
Sbjct: 63  GHPNVDSVIDRFINNNPLPPHQHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDE 122

Query: 119 LTQMRRGKETQPRWWETPVDEHNLQEL 145
           L ++R   +    WWE PV+E  L +L
Sbjct: 123 LKKIREKTKALGNWWEDPVEELALSQL 149

Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4PSU4|AGL61_ARATH Agamous-like MADS-box protein AGL61 OS=Arabidopsis thaliana GN=AGL61 PE=1 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/142 (40%), Positives = 91/142 (64%), Gaps = 4/142 (2%)

Query: 6   RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
           R+KI   K +KE  R +TFSKRR+G++KKA EL TL G+EI ++VFS + KP++FGHPSV
Sbjct: 64  RQKIPMVKIKKESHRQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSV 123

Query: 66  EAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILTQMRR- 124
           E+V +R++  N++      S  +        ELN Q   +  ++EEEK++ + + +MR+ 
Sbjct: 124 ESVLDRYVSRNNM--SLAQSQQLQGSPAASCELNMQLTHILSEVEEEKKKGQAMEEMRKE 181

Query: 125 -GKETQPRWWETPVDEHNLQEL 145
             + +   WWE PV+E N+ +L
Sbjct: 182 SVRRSMINWWEKPVEEMNMVQL 203

Probable transcription factor. Controls central cell differentiation during female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/132 (35%), Positives = 62/132 (46%), Gaps = 28/132 (21%)

Query: 6   RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
           R K E K+ E    R +TFSKRR+G+ KKA EL  L  +E+A+V+FS   K Y F   S+
Sbjct: 3   RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSI 62

Query: 66  EAVANRF------LGMNHLPNDN--------------IHSLVVGHRQV--------RINE 97
            A   R+      +G NH  NDN              I  L +  R++         I E
Sbjct: 63  AATIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEE 122

Query: 98  LNQQHNELRRQL 109
           L Q  N+L R L
Sbjct: 123 LQQLENQLDRSL 134

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39295|AGL15_BRANA Agamous-like MADS-box protein AGL15 OS=Brassica napus GN=AGL15 PE=3 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/67 (47%), Positives = 45/67 (67%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
          R KIE K+ E  + R +TFSKRR+G+ KKA EL  L  +E+AV+VFS+SGK + F   S+
Sbjct: 3  RGKIEIKRIENANSRQVTFSKRRAGLLKKAHELSVLCDAEVAVIVFSKSGKLFEFSSTSM 62

Query: 66 EAVANRF 72
          +    R+
Sbjct: 63 KKTLLRY 69

Probable transcription factor.

Brassica napus (taxid: 3708)

>sp|Q9M2K8|AGL18_ARATH Agamous-like MADS-box protein AGL18 OS=Arabidopsis thaliana GN=AGL18 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%)

Query: 5  WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPS 64
           R +IE KK E  + R +TFSKRR+G+ KKA EL  L  +E+A+++FS +GK Y F    
Sbjct: 2  GRGRIEIKKIENINSRQVTFSKRRNGLIKKAKELSILCDAEVALIIFSSTGKIYDFSSVC 61

Query: 65 VEAVANRF 72
          +E + +R+
Sbjct: 62 MEQILSRY 69

Probable transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Prevents premature flowering. Downstream regulator of a subset of the MIKC* MADS-controlled genes required during pollen maturation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6VAM4|MAD23_ORYSJ MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 44/67 (65%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
          R KIE K+ +    R +TFSKRRSG++KKA EL  L  +E+ ++VFS + + Y F   S+
Sbjct: 3  RGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSSM 62

Query: 66 EAVANRF 72
          +++  R+
Sbjct: 63 KSIIERY 69

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38847|AGL15_ARATH Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 45/67 (67%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
          R KIE K+ E  + R +TFSKRRSG+ KKA EL  L  +E+AV+VFS+SGK + +    +
Sbjct: 3  RGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTGM 62

Query: 66 EAVANRF 72
          +   +R+
Sbjct: 63 KQTLSRY 69

Transcription factor involved in the negative regulation of flowering, probably through the photoperiodic pathway. Acts as both an activator and a repressor of transcription. Binds DNA in a sequence-specific manner in large CArG motif 5'-CC (A/T)8 GG-3'. Participates probably in the regulation of programs active during the early stages of embryo development. Prevents premature perianth senescence and abscission, fruits development and seed desiccation. Stimulates the expression of at least DTA4, LEC2, FUS3, ABI3, AT4G38680/CSP2 and GRP2B/CSP4. Can enhance somatic embryo development in vitro.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/133 (36%), Positives = 62/133 (46%), Gaps = 29/133 (21%)

Query: 6   RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPS- 64
           R K E K+ E    R +TFSKRR+G+ KKA EL  L  +E+A+++FS  GK Y F   S 
Sbjct: 3   RGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSS 62

Query: 65  ----VEAVANRF--LGMNHLPNDN--------------IHSLVVGHRQV--------RIN 96
               VE    R   LG NH  NDN              I  L +  R++         I 
Sbjct: 63  IPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIE 122

Query: 97  ELNQQHNELRRQL 109
           EL Q  N+L R L
Sbjct: 123 ELQQLENQLDRSL 135

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/104 (36%), Positives = 60/104 (57%), Gaps = 5/104 (4%)

Query: 6   RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
           R KIE K+ E    R +TF KRR+G+ KKA EL  L  +E+A++VFS  G+ Y + + SV
Sbjct: 3   RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSV 62

Query: 66  EAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQL 109
           ++   R+   N   +D  +S  V   +V      Q+ ++LR+Q+
Sbjct: 63  KSTVERYKKAN---SDTSNSGTVA--EVNAQHYQQESSKLRQQI 101

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40168|AG_SOLLC Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
          R KIE K+ E    R +TF KRR+G+ KKA EL  L  +E+A+VVFS  G+ Y + + SV
Sbjct: 19 RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSV 78

Query: 66 EAVANRF 72
          +A   R+
Sbjct: 79 KATIERY 85

Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers.

Solanum lycopersicum (taxid: 4081)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
224077620	194	predicted protein [Populus trichocarpa]	0.986	0.742	0.627	5e-46
255557369	220	mads box protein, putative [Ricinus comm	0.986	0.654	0.593	5e-44
255557367	239	mads box protein, putative [Ricinus comm	1.0	0.610	0.583	6e-41
224054544	202	predicted protein [Populus trichocarpa]	0.979	0.707	0.585	3e-39
449434264	260	PREDICTED: agamous-like MADS-box protein	0.979	0.55	0.565	2e-38
449505973	269	PREDICTED: agamous-like MADS-box protein	0.993	0.539	0.565	1e-37
224104275	201	predicted protein [Populus trichocarpa]	0.986	0.716	0.520	6e-34
225462217	199	PREDICTED: agamous-like MADS-box protein	0.979	0.718	0.517	1e-33
225429161	214	PREDICTED: agamous-like MADS-box protein	0.986	0.672	0.468	3e-32
297736394	224	unnamed protein product [Vitis vinifera]	0.986	0.642	0.448	3e-30

>gi|224077620|ref|XP_002305331.1| predicted protein [Populus trichocarpa] gi|222848295|gb|EEE85842.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 115/145 (79%), Gaps = 1/145 (0%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           K+T+ R+KI  K+ E ED+RLITFSKRRSGIYKKA ELVTL G+E+AV+VFS +GK ++F
Sbjct: 4   KQTRGRQKIAIKRIENEDDRLITFSKRRSGIYKKASELVTLCGAEVAVLVFSPAGKAFSF 63

Query: 61  GHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILT 120
           GHPS+E+VANRFLG N  PNDN H LV  HR+VRINELNQQHNEL  ++E E+++ K+L 
Sbjct: 64  GHPSIESVANRFLGQNIAPNDNTHPLVEAHRKVRINELNQQHNELLSEMEAERDRGKVLK 123

Query: 121 QMRRGKETQPRWWETPVDEHNLQEL 145
           +    K +Q  WWE P+DE +LQEL
Sbjct: 124 EGTSEKSSQG-WWEAPIDELSLQEL 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557369|ref|XP_002519715.1| mads box protein, putative [Ricinus communis] gi|223541132|gb|EEF42688.1| mads box protein, putative [Ricinus communis]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           K+TK R+KI  K+ E E++RLITFSKRRSGIYKKA EL+TL G+E+ ++VFS +GKP++F
Sbjct: 5   KQTKGRQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSF 64

Query: 61  GHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILT 120
           GHPS+E++ANRFLG N  P+DN H LV  HR++RINELN+Q+NEL  +LE EKE+  +L 
Sbjct: 65  GHPSLESIANRFLGKNVPPSDNTHPLVEAHRKMRINELNKQYNELLNRLESEKERGSMLK 124

Query: 121 QMRRGKETQPRWWETPVDEHNLQEL 145
           +  RGK     WWE P+D+ N+QEL
Sbjct: 125 KTIRGKGCN-NWWEAPIDDLNMQEL 148

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557367|ref|XP_002519714.1| mads box protein, putative [Ricinus communis] gi|223541131|gb|EEF42687.1| mads box protein, putative [Ricinus communis]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 109/149 (73%), Gaps = 3/149 (2%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           KKTK R+KIE KK E ED+RLITFSKRRSGIYKKA ELVTLTG+E+A +V+S +GKP++F
Sbjct: 8   KKTKGRQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSF 67

Query: 61  GHPSVEAVANRFLGMNHLPNDN---IHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEK 117
            HPS++A+ NRF G      +N    H L+  HR +RI ELNQQHNEL RQLE EKE+ K
Sbjct: 68  AHPSMDAITNRFFGQGSADRNNNPTTHPLIEAHRLMRIEELNQQHNELLRQLEIEKEKGK 127

Query: 118 ILTQMRRGKETQPRWWETPVDEHNLQELL 146
            L Q  +    +  WW+TP++E N+ ELL
Sbjct: 128 QLKQKHKKNNERKGWWDTPIEELNVPELL 156

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054544|ref|XP_002298313.1| predicted protein [Populus trichocarpa] gi|222845571|gb|EEE83118.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 86/147 (58%), Positives = 112/147 (76%), Gaps = 4/147 (2%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           KKTK R+K+E K+ E +D+RLITFSKRRSGIYKKA EL TLTG+EIA+ VFS +GKP++F
Sbjct: 4   KKTKGRQKVEMKRIENQDDRLITFSKRRSGIYKKASELATLTGAEIAIAVFSPAGKPFSF 63

Query: 61  GHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILT 120
           GHPSVE+V NRFL  + L  D+ + LV  HR++RI EL Q+HN+++ QL+EEK  EK L 
Sbjct: 64  GHPSVESVINRFLE-DPLDMDSTYHLVEAHRRMRIEELTQKHNDMQHQLDEEK--EKGLK 120

Query: 121 QMRRGKETQPR-WWETPVDEHNLQELL 146
              + KE   + WW+T VDE N+QEL+
Sbjct: 121 LKSKIKEMDSKGWWDTAVDELNIQELI 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434264|ref|XP_004134916.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Cucumis sativus]

 Score =  163 bits (412), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/145 (56%), Positives = 104/145 (71%), Gaps = 2/145 (1%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           K+TK R+KIE KK   ED+RLITFSKRRSGIYKKA EL TL G+E+ VVVFS +GKP++F
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 61  GHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILT 120
            HP +E +AN+FL  N         LV  HR+VRINELNQQHN+L  QL+ EKE+ K L 
Sbjct: 75  AHPCIETIANKFL--NAAATTTTTPLVEAHRRVRINELNQQHNQLLSQLDAEKEKGKALE 132

Query: 121 QMRRGKETQPRWWETPVDEHNLQEL 145
           +++R +     WWETP +E  ++EL
Sbjct: 133 KLKRVRGNGRGWWETPTEELGIEEL 157

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449505973|ref|XP_004162618.1| PREDICTED: agamous-like MADS-box protein AGL61-like [Cucumis sativus]

 Score =  161 bits (407), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/152 (56%), Positives = 109/152 (71%), Gaps = 7/152 (4%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           K+TK R+KIE KK   ED+RLITFSKRRSGIYKKA EL TL G+E+ VVVFS +GKP++F
Sbjct: 15  KQTKGRQKIEMKKIVNEDDRLITFSKRRSGIYKKASELATLCGAEVGVVVFSPAGKPFSF 74

Query: 61  GHPSVEAVANRFL-------GMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEK 113
            HP +E +AN+FL       G N   N+N H LV  HR+VRINELNQQHN+L  QL+ EK
Sbjct: 75  AHPCIETIANKFLNGNKNNKGNNDDNNNNAHPLVEAHRRVRINELNQQHNQLLSQLDAEK 134

Query: 114 EQEKILTQMRRGKETQPRWWETPVDEHNLQEL 145
           E+ K L +++R +     WWETP +E  ++EL
Sbjct: 135 EKGKALEKLKRVRGNGRGWWETPTEELGIEEL 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104275|ref|XP_002313380.1| predicted protein [Populus trichocarpa] gi|222849788|gb|EEE87335.1| predicted protein [Populus trichocarpa]

 Score =  148 bits (374), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 76/146 (52%), Positives = 105/146 (71%), Gaps = 2/146 (1%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           KKT+ R+K+E K+   ED+RL+TFSKRRSGIYKK  EL+TLTG+E A +VFS  GKP++F
Sbjct: 4   KKTRGRQKVEMKRIVNEDDRLVTFSKRRSGIYKKLSELITLTGTEAAFLVFSPGGKPFSF 63

Query: 61  GHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILT 120
           GHPS+E V +RFL  N    D  H LV  +R+ RI EL Q+++E+++QL+++KE+   L 
Sbjct: 64  GHPSIENVLDRFL-ENPSNADGTHELVEEYRRARIEELTQKYDEMQQQLDDDKEKGSKLK 122

Query: 121 QMRRGKETQPRWWETPVDEHNLQELL 146
              +G E +  WW  PV+E NLQEL+
Sbjct: 123 DKIQGNE-RGDWWNAPVEELNLQELI 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462217|ref|XP_002269756.1| PREDICTED: agamous-like MADS-box protein AGL62-like [Vitis vinifera]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 75/145 (51%), Positives = 103/145 (71%), Gaps = 2/145 (1%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           K+TK R+KIE K+   E++RLITFSKRRSGIYKKA EL TL G+E+ V+VFS +GK ++F
Sbjct: 4   KQTKGRQKIEMKRIPNEEDRLITFSKRRSGIYKKASELSTLCGAEVGVLVFSPAGKAFSF 63

Query: 61  GHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILT 120
           G PS+E + N+ L  N  PNDN  +LV  HR+ R+NEL+Q+++EL  ++E  KEQEKIL 
Sbjct: 64  GQPSIEKITNKVLYENPPPNDNTLNLVEAHRRFRLNELHQKYSELLSKMEVAKEQEKILR 123

Query: 121 QMRRGKETQPRWWETPVDEHNLQEL 145
             ++       WWE P+ E ++ EL
Sbjct: 124 --KKVPNRSKGWWEEPISELSMHEL 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429161|ref|XP_002270964.1| PREDICTED: agamous-like MADS-box protein AGL62 [Vitis vinifera] gi|147772544|emb|CAN63001.1| hypothetical protein VITISV_024203 [Vitis vinifera]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/145 (46%), Positives = 99/145 (68%), Gaps = 1/145 (0%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           K +K R+KIE  K  K++   +TFSKRRSG++KKA EL TL G+ +A++VFS +GK ++F
Sbjct: 4   KPSKGRQKIEISKIPKKNHLQVTFSKRRSGLFKKASELCTLCGANVAIIVFSPAGKVFSF 63

Query: 61  GHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILT 120
           GHP VE++ +RF   N +P  N   L+  HR   + ELN Q  ++  QLE EK++ +IL+
Sbjct: 64  GHPDVESIVDRFFTCNPIPEPNGLHLIEAHRNASVRELNLQLTQVLNQLEAEKKRGEILS 123

Query: 121 QMRRGKETQPRWWETPVDEHNLQEL 145
           QMRR  +TQ  WWE P++E ++ EL
Sbjct: 124 QMRRASQTQ-CWWEAPINELSMPEL 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736394|emb|CBI25117.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 95/145 (65%), Gaps = 1/145 (0%)

Query: 1   KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           +K+K R+K+E  K  KE    +TFSKRRSG++KKA EL TL G+EIA++VFS   K Y+F
Sbjct: 5   RKSKGRQKVEMTKMTKESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKMYSF 64

Query: 61  GHPSVEAVANRFLGMNHLPNDNIHSLVVGHRQVRINELNQQHNELRRQLEEEKEQEKILT 120
           GHP VE++ +RFL  N LP+     L   HR   + +LN Q  ++  QLE EK++ + LT
Sbjct: 65  GHPGVESIIDRFLTGNPLPHSGALQLFEAHRSANVRDLNMQLTQVLNQLEGEKKRGEALT 124

Query: 121 QMRRGKETQPRWWETPVDEHNLQEL 145
           QM++  + Q  WW  P++E + ++L
Sbjct: 125 QMKKASQAQ-YWWAAPIEELSFEQL 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2047304	264	AGL61 "AGAMOUS-like 61" [Arabi	0.849	0.469	0.382	1.4e-18
TAIR|locus:2175188	299	AGL62 "AGAMOUS-like 62" [Arabi	0.849	0.414	0.388	2.2e-18
TAIR|locus:2102990	207	AGL57 "AGAMOUS-like 57" [Arabi	0.863	0.608	0.341	2.3e-16
TAIR|locus:2025386	247	AGL28 "AGAMOUS-like 28" [Arabi	0.828	0.489	0.349	1.6e-15
TAIR|locus:2032537	182	AGL59 "AGAMOUS-like 59" [Arabi	0.568	0.456	0.494	6.9e-15
TAIR|locus:2115420	248	AT4G36590 [Arabidopsis thalian	0.842	0.495	0.351	8.8e-15
TAIR|locus:4010713489	185	AGL64 "AGAMOUS-like 64" [Arabi	0.575	0.454	0.471	1.8e-14
TAIR|locus:2206320	226	AGL23 "AGAMOUS-like 23" [Arabi	0.828	0.535	0.308	1.6e-13
TAIR|locus:2195798	217	AT1G17310 [Arabidopsis thalian	0.356	0.239	0.5	3.3e-13
TAIR|locus:2040819	172	AGL29 "AGAMOUS-like 29" [Arabi	0.369	0.313	0.537	9.1e-13

TAIR|locus:2047304 AGL61 "AGAMOUS-like 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 49/128 (38%), Positives = 73/128 (57%)

Query:    20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLP 79
             R +TFSKRR+G++KKA EL TL G+EI ++VFS + KP++FGHPSVE+V +R++  N++ 
Sbjct:    78 RQVTFSKRRAGLFKKASELCTLCGAEIGIIVFSPAKKPFSFGHPSVESVLDRYVSRNNMS 137

Query:    80 NDNIHSLVVGHRQVRINELNQQHNXXXXXXXXXXXXXXILTQMRRG--KETQPRWWETPV 137
                   L  G       ELN Q                 + +MR+   + +   WWE PV
Sbjct:   138 LAQSQQLQ-GSPAASC-ELNMQLTHILSEVEEEKKKGQAMEEMRKESVRRSMINWWEKPV 195

Query:   138 DEHNLQEL 145
             +E N+ +L
Sbjct:   196 EEMNMVQL 203

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009559 "embryo sac central cell differentiation" evidence=IMP

GO:0043078 "polar nucleus" evidence=IDA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2175188 AGL62 "AGAMOUS-like 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 49/126 (38%), Positives = 69/126 (54%)

Query:    22 ITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLP-- 79
             +TFSKRRSG++KKA EL TL G+E+A+VVFS   K ++FGHP+V++V +RF+  N LP  
Sbjct:    24 VTFSKRRSGLFKKASELCTLCGAEVAIVVFSPGRKVFSFGHPNVDSVIDRFINNNPLPPH 83

Query:    80 NDNIHSLVVGHRQVRINELNQQHNXXXXXXXXXXXXXXILTQMRRGKETQPRWWETPVDE 139
               N   L    R   + +LN                   L ++R   +    WWE PV+E
Sbjct:    84 QHNNMQLRETRRNSIVQDLNNHLTQVLSQLETEKKKYDELKKIREKTKALGNWWEDPVEE 143

Query:   140 HNLQEL 145
               L +L
Sbjct:   144 LALSQL 149

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009960 "endosperm development" evidence=IMP

TAIR|locus:2102990 AGL57 "AGAMOUS-like 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 44/129 (34%), Positives = 71/129 (55%)

Query:    20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNH-- 77
             R+ITFSKR++GI+KK  ELV +   E+A ++FSQ  KPYTF HPS++ VA+R    +   
Sbjct:    29 RMITFSKRKTGIFKKMNELVAMCDVEVAFLIFSQPKKPYTFAHPSMKKVADRLKNPSRQE 88

Query:    78 -LPNDNIHSLVVGHRQVRINELNQQHNXXXXXXXXXXXXXXILTQMRRGKETQPRWWETP 136
              L  D+   LV  +++ R+++L ++                +L + R  K+    WW  P
Sbjct:    89 PLERDDTRPLVEAYKKRRLHDLVKKMEALEEELAMDLEKLKLLKESRNEKKLDKMWWNFP 148

Query:   137 VDEHNLQEL 145
              +  + +EL
Sbjct:   149 SEGLSAKEL 157

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2025386 AGL28 "AGAMOUS-like 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 43/123 (34%), Positives = 62/123 (50%)

Query:    22 ITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPND 81
             +TFSKRRSG++KK  EL TL  +EIA++VFS SGK Y+FGHP+V  + +  LG   +   
Sbjct:    24 VTFSKRRSGLFKKGSELCTLCDAEIAIIVFSPSGKAYSFGHPNVNKLLDHSLG--RVIRH 81

Query:    82 NIHSLVVGHRQVRINELNQQHNXXXXXXXXXXXXXXILTQMRRGKETQPRWWETPVDEHN 141
             N  +      ++RI  LN+                  + Q  R  +   +WW     E N
Sbjct:    82 NNTNFAESRTKLRIQMLNESLTEVMAEKEKEQETKQSIVQNERENKDAEKWWRNSPTELN 141

Query:   142 LQE 144
             L +
Sbjct:   142 LAQ 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2032537 AGL59 "AGAMOUS-like 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 42/85 (49%), Positives = 56/85 (65%)

Query:    20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLP 79
             R +TFSKR +GIY K  EL  L G E+A + +S SGKPYTFG PS +AVA RFL      
Sbjct:    23 RSVTFSKRLNGIYTKISELSILCGVEVAFIGYSCSGKPYTFGSPSFQAVAERFLN-GDAS 81

Query:    80 NDNIHSLVVG-HRQVRINELNQQHN 103
             + +  SLV+  H+Q +I EL +++N
Sbjct:    82 SSSSSSLVMNAHKQAKIQELCKKYN 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2115420 AT4G36590 [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 45/128 (35%), Positives = 69/128 (53%)

Query:    22 ITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNH---- 77
             +TFSKRR G++KKA EL TL+G+EI ++VFS  GK ++FGHPSV+ + +RF   NH    
Sbjct:    24 VTFSKRRFGLFKKASELCTLSGAEILLIVFSPGGKVFSFGHPSVQELIHRFSNPNHNSAI 83

Query:    78 LPNDNIHSLVVGHRQVR-INELNQQHNXXXXXXXXXXXXXXILTQMRRGKETQPRWWETP 136
             + + N +  +V  R  R I  LN                  +L  ++  +E    W+E  
Sbjct:    84 VHHQNNNLQLVETRPDRNIQYLNNILTEVLANQEKEKQKRMVLDLLKESREQVGNWYEKD 143

Query:   137 VDEHNLQE 144
             V + ++ E
Sbjct:   144 VKDLDMNE 151

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:4010713489 AGL64 "AGAMOUS-like 64" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 41/87 (47%), Positives = 58/87 (66%)

Query:    20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLG--MNH 77
             RL+T SKRR+GIY K  EL  L G+E+A + +S SGKPYTFG PS +AVA RFL    + 
Sbjct:    23 RLVTLSKRRNGIYTKLSELSILCGAEVAFLGYSCSGKPYTFGSPSFQAVAERFLNGEASS 82

Query:    78 LPNDNIH-SLVVGHRQVRINELNQQHN 103
               + ++  S++  H+Q +I EL + +N
Sbjct:    83 SSSSSLQRSVMNAHQQAKIQELCKVYN 109

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2206320 AGL23 "AGAMOUS-like 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 38/123 (30%), Positives = 63/123 (51%)

Query:    22 ITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPND 81
             +TFSKR++G++KKA E  TL  ++IA++VFS +GK ++FGHP+V+ + + F G   +   
Sbjct:    24 VTFSKRKAGLFKKASEFCTLCDAKIAMIVFSPAGKVFSFGHPNVDVLLDHFRGC--VVGH 81

Query:    82 NIHSLVVGHRQVRINELNQQHNXXXXXXXXXXXXXXILTQMRRGKETQPRWWETPVDEHN 141
             N  +L   + ++ +  LN+ +                  Q  R  E    WW     E N
Sbjct:    82 NNTNLDESYTKLHVQMLNKSYTEVKAEVEKEQKNKQSRAQNERENENAEEWWSKSPLELN 141

Query:   142 LQE 144
             L +
Sbjct:   142 LSQ 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009553 "embryo sac development" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

TAIR|locus:2195798 AT1G17310 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 27/54 (50%), Positives = 41/54 (75%)

Query:    20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFL 73
             R +TFSKRR G++KK+ EL  LTG++IAV+ FS+  + Y FGH  V+A+ +++L
Sbjct:    63 RQVTFSKRRRGLFKKSAELSVLTGAKIAVITFSKCDRIYRFGH--VDALIDKYL 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2040819 AGL29 "AGAMOUS-like 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 29/54 (53%), Positives = 44/54 (81%)

Query:    20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFL 73
             R +TFSKRR+G++KKA EL TL  +E+ +VVFS  GKP+++G P++++VA RF+
Sbjct:    17 RQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSYGKPNLDSVAERFM 70

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_IV001019 hypothetical protein (194 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	2e-24
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	3e-22
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	1e-21
smart00432	59	smart00432, MADS, MADS domain	6e-21
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	6e-12
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-09

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 89.5 bits (223), Expect = 2e-24
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
          R KIE K+ E    R +TFSKRR+G+ KKA EL  L  +E+A+++FS SGK Y F  PS+
Sbjct: 2  RGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSM 61

Query: 66 EAVANRFLGMNH 77
          E +  R+   + 
Sbjct: 62 EKIIERYQKTSG 73

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score = 83.3 bits (207), Expect = 3e-22
 Identities = 31/58 (53%), Positives = 40/58 (68%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHP 63
          R KIE K+ E +  R +TFSKRR+G++KKA EL  L  +E+AV+VFS SGK Y F   
Sbjct: 2  RGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 82.3 bits (204), Expect = 1e-21
 Identities = 37/72 (51%), Positives = 51/72 (70%), Gaps = 1/72 (1%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGH-PS 64
          RKKI+ K+ E + +R +TFSKRR G++KKA EL TL G+E+AV+V+S SGK Y F     
Sbjct: 2  RKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE 61

Query: 65 VEAVANRFLGMN 76
          VE V +RF  ++
Sbjct: 62 VEGVISRFEVLS 73

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score = 79.9 bits (198), Expect = 6e-21
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHP 63
          R+KIE K+ E +  R +TFSKRR+G++KKA EL  L  +E+A++VFS +GK Y F  P
Sbjct: 2  RRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 56.6 bits (137), Expect = 6e-12
 Identities = 28/54 (51%), Positives = 38/54 (70%), Gaps = 5/54 (9%)

Query: 7  KKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
          K+IE K N     R +TFSKRR+GI+KKA EL  L  +E+AV++FS +GK Y +
Sbjct: 1  KRIENKSN-----RQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEY 49

Length = 51

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 28/71 (39%), Positives = 43/71 (60%)

Query: 6   RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
            +KI       + +R +TFSKR+ GI KKA EL  LTG+E+ ++V S++G  +TF  P +
Sbjct: 83  GRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKL 142

Query: 66  EAVANRFLGMN 76
           E+V     G +
Sbjct: 143 ESVVKSLEGKS 153

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.98
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.97
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.92
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.86
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.52
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	95.09
PF08432	182	Vfa1: AAA-ATPase Vps4-associated protein 1; InterP	82.02

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=1.1e-33  Score=186.33  Aligned_cols=73  Identities=45%  Similarity=0.698  Sum_probs=71.1

Q ss_pred             ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCCCC
Q 047467            5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNH   77 (146)
Q Consensus         5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~~~   77 (146)
                      ||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|++|.|++|++++||+||+..+.
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~~   73 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTSG   73 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999998753

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.97  E-value=2.3e-32  Score=206.96  Aligned_cols=76  Identities=53%  Similarity=0.785  Sum_probs=72.8

Q ss_pred             cccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCc--hHHHHHHhhCCCCCC
Q 047467            4 KWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPS--VEAVANRFLGMNHLP   79 (146)
Q Consensus         4 ~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~--~~~vl~ry~~~~~~~   79 (146)
                      |||+||+|++|+|+..|+|||+|||.||||||+||||||||+||||||||+|++|.|++|+  |+.|+++|.......
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~   78 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPS   78 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhh
Confidence            8999999999999999999999999999999999999999999999999999999999988  999999999876543

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=7.7e-31  Score=175.08  Aligned_cols=74  Identities=53%  Similarity=0.759  Sum_probs=70.9

Q ss_pred             ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCc-hHHHHHHhhCCCCC
Q 047467            5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPS-VEAVANRFLGMNHL   78 (146)
Q Consensus         5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~-~~~vl~ry~~~~~~   78 (146)
                      ||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ +.++|++|...+..
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~   75 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSAL   75 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHh
Confidence            799999999999999999999999999999999999999999999999999999998877 99999999998754

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=5.3e-30  Score=160.35  Aligned_cols=59  Identities=51%  Similarity=0.824  Sum_probs=58.1

Q ss_pred             ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCC
Q 047467            5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHP   63 (146)
Q Consensus         5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p   63 (146)
                      ||+||+|++|+|++.|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=3.8e-29  Score=156.54  Aligned_cols=59  Identities=53%  Similarity=0.754  Sum_probs=57.7

Q ss_pred             ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCC
Q 047467            5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHP   63 (146)
Q Consensus         5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p   63 (146)
                      ||+||+|++|+|+..|++||+||+.||||||+|||+||||+||+|||||+|+++.|++|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999876

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.92  E-value=9.6e-27  Score=141.38  Aligned_cols=51  Identities=51%  Similarity=0.838  Sum_probs=46.7

Q ss_pred             EEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecC
Q 047467           12 KKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGH   62 (146)
Q Consensus        12 ~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~   62 (146)
                      ++|+|+..|++||+||+.||||||+|||+||||+||||||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            579999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.86  E-value=1.2e-22  Score=160.79  Aligned_cols=78  Identities=42%  Similarity=0.599  Sum_probs=70.8

Q ss_pred             CCCcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCch---------HHHHHH
Q 047467            1 KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV---------EAVANR   71 (146)
Q Consensus         1 ~~~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~---------~~vl~r   71 (146)
                      |++.||+||+|+||+|+..|.+||+|||.||||||+||++|+|.+|-|+|.|.+|.+|.|++|.+         +++|..
T Consensus        59 k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~  138 (338)
T KOG0015|consen   59 KKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQA  138 (338)
T ss_pred             ccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999974         456666


Q ss_pred             hhCCCCC
Q 047467           72 FLGMNHL   78 (146)
Q Consensus        72 y~~~~~~   78 (146)
                      .++.+..
T Consensus       139 cLn~pd~  145 (338)
T KOG0015|consen  139 CLNAPDT  145 (338)
T ss_pred             HhcCCCC
Confidence            6766543

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.52  E-value=4.9e-15  Score=122.01  Aligned_cols=69  Identities=39%  Similarity=0.549  Sum_probs=64.7

Q ss_pred             CcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHH
Q 047467            3 TKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANR   71 (146)
Q Consensus         3 ~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~r   71 (146)
                      +|||+||.|.+|+|+.+|.|||+||+.||+|||.||++|+|++|.++|.|.+|..+.|+.|....|+.-
T Consensus        80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~  148 (412)
T COG5068          80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS  148 (412)
T ss_pred             ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999986655543

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=95.09  E-value=0.039  Score=37.50  Aligned_cols=44  Identities=20%  Similarity=0.331  Sum_probs=37.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCChhhcC
Q 047467           97 ELNQQHNELRRQLEEEKEQEKILTQMRRGKETQPRWWETPVDEHNLQELL  146 (146)
Q Consensus        97 ~l~~~~~~l~~el~~ek~~~~~l~~~~~~~~~~~~~w~~~l~~L~~eELe  146 (146)
                      .+...++.+..++...+.+++.|+...+...|+      +|++|+++||+
T Consensus         9 ~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ge------dL~~Ls~~eL~   52 (100)
T PF01486_consen    9 LWDSQHEELQQEIAKLRKENESLQKELRHLMGE------DLESLSLKELQ   52 (100)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc------cccccchHHHH
Confidence            456677778888888899999999999999997      99999999984

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function

Probab=82.02  E-value=6.8  Score=29.49  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=16.3

Q ss_pred             cCCceEEEEecCC--------CCCeeecCCc
Q 047467           42 TGSEIAVVVFSQS--------GKPYTFGHPS   64 (146)
Q Consensus        42 c~~~v~~ii~s~~--------g~~~~~~~p~   64 (146)
                      .++..|.|||-|+        +.-|.|..|+
T Consensus        11 ~~~k~C~IC~KpsttVL~t~~~~DfFY~C~~   41 (182)
T PF08432_consen   11 TDAKACFICYKPSTTVLITPDNKDFFYVCPS   41 (182)
T ss_pred             CCCCceeEecCCCceEEecCCCCCeEEeCcc
Confidence            5677777777654        6777777776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		3e-08
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		6e-07
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		6e-07
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		4e-06
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		8e-06
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		1e-05
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-05
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		9e-05
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		1e-04

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMN 76
          R +TFSKR+ GI KKA EL  LTG+++ ++V S++G  YTF  P  E +  +  G N
Sbjct: 32 RHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGRN 88

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFG 61
          R  TFSKR++GI KKA EL TLTG+++ ++V S++G  YTF 
Sbjct: 25 RYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA 66

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFG 61
          R  TFSKR++GI KKA EL TLTG+++ ++V S++G  YTF 
Sbjct: 26 RYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA 67

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNH 77
          R +TF+KR+ G+ KKA EL  L  +EIA+++F+ S K + +    ++ V  ++   N 
Sbjct: 16 RQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNH 77
          R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K + +    ++ V  ++   N 
Sbjct: 16 RQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNH 77
          R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K + +    ++ V  ++   N 
Sbjct: 16 RQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNE 73

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRF 72
          R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K + +    ++ V  ++
Sbjct: 16 RQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKY 68

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRF 72
          R +TF+KR+ G+ KKA EL  L   EIA+++F+ + + + +    ++ V  ++
Sbjct: 17 RQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 69

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 20 RLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRF 72
          R +TF+KR+ G+ KKA EL  L   EIA+++F+ + + + +    ++ V  ++
Sbjct: 16 RQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYASTDMDRVLLKY 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-26
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	2e-25
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	7e-25
1egw_A	77	MADS box transcription enhancer factor 2, polypept	2e-17
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	8e-17

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score = 93.7 bits (233), Expect = 3e-26
 Identities = 30/77 (38%), Positives = 47/77 (61%)

Query: 1  KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
          KKT+ R KI+ +  + +  R  TFSKR++GI KKA EL TLTG+++ ++V S++G  YTF
Sbjct: 7  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 66

Query: 61 GHPSVEAVANRFLGMNH 77
              ++ +     G   
Sbjct: 67 ATRKLQPMITSETGKAL 83

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score = 92.2 bits (229), Expect = 2e-25
 Identities = 30/76 (39%), Positives = 47/76 (61%)

Query: 1  KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
          KKT+ R KI+ +  + +  R  TFSKR++GI KKA EL TLTG+++ ++V S++G  YTF
Sbjct: 6  KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTF 65

Query: 61 GHPSVEAVANRFLGMN 76
              ++ +     G  
Sbjct: 66 ATRKLQPMITSETGKA 81

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score = 90.7 bits (225), Expect = 7e-25
 Identities = 33/76 (43%), Positives = 47/76 (61%)

Query: 1  KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTF 60
           + K R+KIE K  E +  R +TFSKR+ GI KKA EL  LTG+++ ++V S++G  YTF
Sbjct: 13 GQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTF 72

Query: 61 GHPSVEAVANRFLGMN 76
            P  E +  +  G N
Sbjct: 73 STPKFEPIVTQQEGRN 88

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score = 70.9 bits (174), Expect = 2e-17
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
          RKKI+  +   E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K + +    +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 66 EAVANRF 72
          + V  ++
Sbjct: 62 DKVLLKY 68

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score = 69.8 bits (171), Expect = 8e-17
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
          RKKI+  +   E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K + +    +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 66 EAVANRF 72
          + V  ++
Sbjct: 62 DKVLLKY 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=1.7e-37  Score=207.77  Aligned_cols=79  Identities=32%  Similarity=0.502  Sum_probs=75.4

Q ss_pred             ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCCCCCCCCCC
Q 047467            5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHLPNDNI   83 (146)
Q Consensus         5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~~~~~~~~~   83 (146)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.||+||+..++++...+
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~~   79 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRT   79 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEEC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999887766544

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1.2e-37  Score=203.54  Aligned_cols=74  Identities=34%  Similarity=0.536  Sum_probs=70.2

Q ss_pred             ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCCCCC
Q 047467            5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGMNHL   78 (146)
Q Consensus         5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~~~~   78 (146)
                      ||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|+||+++.||+||+..+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988654

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=7.2e-37  Score=208.05  Aligned_cols=75  Identities=43%  Similarity=0.624  Sum_probs=71.1

Q ss_pred             CCCcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCC
Q 047467            1 KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGM   75 (146)
Q Consensus         1 ~~~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~   75 (146)
                      +++|||+||+|++|+|+.+|++||+|||.||||||+||||||||+||||||||+|++|+|+||++..||++|.+.
T Consensus        13 ~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G~   87 (100)
T 1mnm_A           13 GQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   87 (100)
T ss_dssp             --CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhCC
Confidence            479999999999999999999999999999999999999999999999999999999999999999999999653

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=3.6e-37  Score=206.93  Aligned_cols=74  Identities=41%  Similarity=0.573  Sum_probs=71.3

Q ss_pred             CCCcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhC
Q 047467            1 KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLG   74 (146)
Q Consensus         1 ~~~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~   74 (146)
                      |++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|++|++++||++|.+
T Consensus         7 k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G   80 (92)
T 1hbx_A            7 KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG   80 (92)
T ss_dssp             CSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred             CCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999987654

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=1.7e-36  Score=207.39  Aligned_cols=72  Identities=40%  Similarity=0.564  Sum_probs=70.0

Q ss_pred             CCCcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHh
Q 047467            1 KKTKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRF   72 (146)
Q Consensus         1 ~~~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry   72 (146)
                      |++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.||+++
T Consensus         6 k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~   77 (103)
T 1k6o_B            6 KKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE   77 (103)
T ss_dssp             CSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred             CCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence            689999999999999999999999999999999999999999999999999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	4e-25
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	5e-25
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	6e-24

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 89.4 bits (222), Expect = 4e-25
 Identities = 33/73 (45%), Positives = 46/73 (63%)

Query: 4  KWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHP 63
          K R+KIE K  E +  R +TFSKR+ GI KKA EL  LTG+++ ++V S++G  YTF  P
Sbjct: 2  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 61

Query: 64 SVEAVANRFLGMN 76
            E +  +  G N
Sbjct: 62 KFEPIVTQQEGRN 74

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.4 bits (222), Expect = 5e-25
 Identities = 28/74 (37%), Positives = 45/74 (60%)

Query: 3  TKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGH 62
          T+ R KI+ +  + +  R  TFSKR++GI KKA EL TLTG+++ ++V S++G  YTF  
Sbjct: 1  TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 60

Query: 63 PSVEAVANRFLGMN 76
            ++ +     G  
Sbjct: 61 RKLQPMITSETGKA 74

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (214), Expect = 6e-24
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 6  RKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSV 65
          RKKI+  +   E  R +TF+KR+ G+ KKA EL  L   EIA+++F+ S K + +    +
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDM 61

Query: 66 EAVANRF 72
          + V  ++
Sbjct: 62 DKVLLKY 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	100.0

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-38  Score=199.65  Aligned_cols=70  Identities=34%  Similarity=0.559  Sum_probs=68.8

Q ss_pred             ccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhC
Q 047467            5 WRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLG   74 (146)
Q Consensus         5 ~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~   74 (146)
                      ||+||+|++|+|+..|++||+|||.||||||+|||+||||+||||||||+|++|+|+||++++||+||..
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999999999974

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7e-37  Score=200.34  Aligned_cols=73  Identities=38%  Similarity=0.545  Sum_probs=70.8

Q ss_pred             CcccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCC
Q 047467            3 TKWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGM   75 (146)
Q Consensus         3 ~~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~   75 (146)
                      |+||+||+|++|+|+..|++||+|||.||||||+|||+||||+||||||||+|++|.|+||++++|+++|...
T Consensus         1 ~~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~~~~~vi~~~~~~   73 (84)
T d1srsa_           1 TRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECGGGHHHHSSHHHH
T ss_pred             CCCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCCCHHHHHHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999753

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-36  Score=199.08  Aligned_cols=72  Identities=44%  Similarity=0.648  Sum_probs=70.5

Q ss_pred             cccccceeEEccCCCCccccccccccchhhhhHhhhhhcCCceEEEEecCCCCCeeecCCchHHHHHHhhCC
Q 047467            4 KWRKKIETKKNEKEDERLITFSKRRSGIYKKACELVTLTGSEIAVVVFSQSGKPYTFGHPSVEAVANRFLGM   75 (146)
Q Consensus         4 ~~r~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~ELs~Lc~~~v~~ii~s~~g~~~~~~~p~~~~vl~ry~~~   75 (146)
                      +||+||+|++|+|+..|+|||+|||.||||||+|||+||||+||||||||+|++|.|+||+|++||++|.+.
T Consensus         2 k~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp~v~~vl~r~~~~   73 (85)
T d1mnma_           2 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEGR   73 (85)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHHH
T ss_pred             CCccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCCCHHHHHHHHhcc
Confidence            699999999999999999999999999999999999999999999999999999999999999999999865