Citrus Sinensis ID: 047470
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | 2.2.26 [Sep-21-2011] | |||||||
| O65351 | 757 | Subtilisin-like protease | yes | no | 0.948 | 0.948 | 0.421 | 1e-159 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.947 | 0.925 | 0.381 | 1e-140 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.883 | 0.893 | 0.366 | 1e-108 | |
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.895 | 0.927 | 0.356 | 1e-106 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.639 | 0.600 | 0.255 | 3e-22 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.557 | 0.366 | 0.232 | 2e-10 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.565 | 0.361 | 0.236 | 3e-10 | |
| P0DD35 | 1169 | C5a peptidase OS=Streptoc | no | no | 0.565 | 0.366 | 0.235 | 4e-10 | |
| P0DD34 | 1169 | C5a peptidase OS=Streptoc | N/A | no | 0.565 | 0.366 | 0.235 | 4e-10 | |
| P58099 | 1181 | C5a peptidase OS=Streptoc | N/A | no | 0.570 | 0.365 | 0.236 | 5e-10 |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 561 bits (1446), Expect = e-159, Method: Compositional matrix adjust.
Identities = 320/759 (42%), Positives = 453/759 (59%), Gaps = 41/759 (5%)
Query: 18 WLLLLLLGSDNAESRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLL 77
+ LLL LG + S + D TYI+HM S PS+F H +W+ S L+S S A+ LL
Sbjct: 11 FFLLLCLGFCHVSSSSSDQGTYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSAE----LL 66
Query: 78 YSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSG-LWPS 136
Y+Y + I GFS RLT + + P ++ PE +L TT +P FLGL ++ L+P
Sbjct: 67 YTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPE 126
Query: 137 ARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSF 196
A V++G++DTG+WPES+S+ D+G P+P W G CE GT F+ +CNRKLIGAR F
Sbjct: 127 AGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFF 186
Query: 197 SKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAH 256
++G ++ + + + S RD GHGTHTSSTAAG+ VEG S GYA GTARG+APRA
Sbjct: 187 ARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRAR 246
Query: 257 VAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIE 316
VA+YKV W +SD+LA +D+AIAD V+++S+SLG + Y+ D +AI + +A+E
Sbjct: 247 VAVYKVCWLGGC---FSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAME 303
Query: 317 NGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFP-ES 374
GI+V C+AGN G S+ N APWITTVGAGTLDR F A L NG F G+S F E+
Sbjct: 304 RGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEA 363
Query: 375 VYITDAPLYY---GKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGA 431
+ P Y N N ++C G+L P++V GK+V CD I+ Q +V +A
Sbjct: 364 LPDKLLPFIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRG--INARVQKGDVVKAAG 421
Query: 432 YAAIFLTDTP----DIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGT 487
+ L +T ++ +D + +P+ + AG IR YVT + + S+ + T +G
Sbjct: 422 GVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVT-TDPNPTASISILGTVVGV 480
Query: 488 KPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSG 547
KP+P VA+FSSRGP+ I+P ILKPD++APGV++LAA + + ++ + SG
Sbjct: 481 KPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISG 540
Query: 548 TSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYP--------VNFAENEIGVVPATP 599
TSM+ PHV+G+AALLK++H +WSPAAIRSA+MTTAY ++ A + P+TP
Sbjct: 541 TSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIATGK----PSTP 596
Query: 600 LDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNC----SQES 655
D GAGH+ P A +PGLIYD +DY+ FLC L Y Q+++V RRN + C S
Sbjct: 597 FDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRN-YTCDPSKSYSV 655
Query: 656 TDLNYPSFAAVFTNETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKY 715
DLNYPSF AV + A ++R V +VG + V G+ I +EP+ L F +
Sbjct: 656 ADLNYPSF-AVNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEAN 714
Query: 716 QLLDFALSVEIDRESPRV--SYGYLKWIDQYNHTVSSPV 752
+ + ++ +D P S+G ++W D H V SPV
Sbjct: 715 EKKSYTVTFTVDSSKPSGSNSFGSIEWSDG-KHVVGSPV 752
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1281), Expect = e-140, Method: Compositional matrix adjust.
Identities = 300/787 (38%), Positives = 441/787 (56%), Gaps = 70/787 (8%)
Query: 19 LLLLLLGSDNAESRNEDHQTYIIHMD-HSHKPSAFLTHESWHLSILKSA--------SYP 69
++ LL S ++E + QTYI+ + +S F + WHLS L+ A P
Sbjct: 10 IIFLLFCSSSSEILQK--QTYIVQLHPNSETAKTFASKFDWHLSFLQEAVLGVEEEEEEP 67
Query: 70 ADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKP 129
+ R LLYSY I+GF+A+LT S+ + SP +A P+ ++ TT+S FLGL
Sbjct: 68 SSR---LLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHVLQVQTTYSYKFLGLDG 124
Query: 130 --NSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCN 187
NSG+W +R+GQG IIG++DTG+WPES SF D GMP +PR+W G C+ G +FS CN
Sbjct: 125 FGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKWKGICQEGESFSSSSCN 184
Query: 188 RKLIGARSFSKGLQAAGI-----NVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFG 242
RKLIGAR F +G + A N+ +EY SARD GHGTHT+ST G+ V + G
Sbjct: 185 RKLIGARFFIRGHRVANSPEESPNMPREY--ISARDSTGHGTHTASTVGGSSVSMANVLG 242
Query: 243 YAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPY 302
G ARG+AP AH+A+YKV W +SD+LA +D AI D VD++SLSLG P
Sbjct: 243 NGAGVARGMAPGAHIAVYKVCWFNGCY---SSDILAAIDVAIQDKVDVLSLSLGGFPIPL 299
Query: 303 FNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDN 361
++D IAI + A+E GI V+CAAGN+G S+ N APW++T+GAGTLDR F A V L N
Sbjct: 300 YDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTLDRRFPAVVRLAN 359
Query: 362 GLTFKGISYFP-----------ESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVF 410
G G S +P E +Y+T D C GSL +E+ GK+V
Sbjct: 360 GKLLYGESLYPGKGIKNAGREVEVIYVTGG-------DKGSEFCLRGSLPREEIRGKMVI 412
Query: 411 CDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDE-----YYIPSLILPTSAGTSIRQ 465
CD ++ S+ E + A+ L +T +I+ +E + +P+ ++ + ++
Sbjct: 413 CDRG--VNGRSEKGEAVKEAGGVAMILANT-EINQEEDSIDVHLLPATLIGYTESVLLKA 469
Query: 466 YVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525
YV K K + + F T +G AP VA FS+RGP +P ILKPD++APGV+++AA
Sbjct: 470 YVNATVKPKARII-FGGTVIGRSRAPEVAQFSARGPSLANPSILKPDMIAPGVNIIAAWP 528
Query: 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA--Y 583
N+ + ++ + SGTSM+ PHV+G+ AL+++ + +WSPAAI+SA+MTTA Y
Sbjct: 529 QNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAAIKSALMTTADLY 588
Query: 584 PVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAV 643
+ G PA GAGH++P KA++PGL+Y+ DY+ +LC LG+ + A+
Sbjct: 589 DRQGKAIKDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLCTLGFTRSDILAI 648
Query: 644 IRRNQWNCS-----QESTDLNYPSFAAVFTNETTAKNFSRVVKNVGAEDSIYRAVLEFPA 698
+N +C+ LNYPS A +F T + +R V NVG+ +SIY ++ P
Sbjct: 649 THKNV-SCNGILRKNPGFSLNYPSIAVIFKRGKTTEMITRRVTNVGSPNSIYSVNVKAPE 707
Query: 699 GMNIRIEPSTLKFTQKYQLLDFALSVEIDRES-----PRVSYGYLKWIDQYN--HTVSSP 751
G+ + + P L F Q L + + + +++ + G L W++ +N V SP
Sbjct: 708 GIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVASFAQGQLTWVNSHNLMQRVRSP 767
Query: 752 V-VAIKT 757
+ V +KT
Sbjct: 768 ISVTLKT 774
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Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 392 bits (1006), Expect = e-108, Method: Compositional matrix adjust.
Identities = 261/713 (36%), Positives = 374/713 (52%), Gaps = 44/713 (6%)
Query: 59 HLSILKSASYPADR-NNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGKLF 117
H+++L S + + +YSY F+A+L+P + ++ + ++ + KL
Sbjct: 56 HINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEMEEVVSVSRNQYRKLH 115
Query: 118 TTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCEN 177
TT S +F+GL + A + VIIG++DTGI P+SESF D G+ P P +W G C
Sbjct: 116 TTKSWDFVGLPLTAKRHLKAE--RDVIIGVLDTGITPDSESFLDHGLGPPPAKWKGSCGP 173
Query: 178 GTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEG 237
F+ CN K+IGA+ F V D D GHGTHTSST AG V
Sbjct: 174 YKNFTG--CNNKIIGAKYFKHDGNVPAGEVRSPIDID------GHGTHTSSTVAGVLVAN 225
Query: 238 VSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGF 297
S +G A GTARG P A +AMYKV WA A D+LAG + AI DGV+I+S+S+G
Sbjct: 226 ASLYGIANGTARGAVPSARLAMYKVCWAR--SGCADMDILAGFEAAIHDGVEIISISIGG 283
Query: 298 DQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRS--IHNGAPWITTVGAGTLDRSFHA 355
Y +D I++ S A+ GI+ V +AGNDG P S + N PWI TV A +DR+F +
Sbjct: 284 PIADYSSDSISVGSFHAMRKGILTVASAGNDG-PSSGTVTNHEPWILTVAASGIDRTFKS 342
Query: 356 TVTLDNGLTFKGISYFPESVYITDAPLYYG----KNDVNKSI---CHLGSLNPDEVTGKV 408
+ L NG +F G+ S PL G KN +K + C SL+ +V GKV
Sbjct: 343 KIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTDDKYLARYCFSDSLDRKKVKGKV 402
Query: 409 VFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVT 468
+ C R+ + G AI ++D ++ + P+ + +S G I +Y+
Sbjct: 403 MVC----RMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATSVNSSVGDIIYRYI- 457
Query: 469 GKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528
N ++ S T T PAP VASFSSRGP+P S +LKPDI APG+D+LAA
Sbjct: 458 --NSTRSASAVIQKTRQVTIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKR 515
Query: 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFA 588
+ + + + SGTSMA PHVAGVAA +K+ H DW+PAAI+SAI+T+A P++
Sbjct: 516 SLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRR 575
Query: 589 ENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQ 648
N+ +G G I+P +A PGL+YD D YV+FLCG GY+ + ++
Sbjct: 576 VNK-----DAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRS 630
Query: 649 WNCSQ-----ESTDLNYPSFAAVFTNETTAK--NFSRVVKNVGAEDSIYRAVLEFPAGMN 701
+CS LNYP+ + T+ F R V NVG S+Y A + P G+
Sbjct: 631 VSCSSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVE 690
Query: 702 IRIEPSTLKFTQKYQLLDFALSVEIDRESP-RVSYGYLKWIDQYNHTVSSPVV 753
I +EP +L F++ Q F + V+ + +P ++ G L W H+V SP+V
Sbjct: 691 ITVEPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVW-KSPRHSVRSPIV 742
|
Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function description |
|---|
Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust.
Identities = 266/746 (35%), Positives = 396/746 (53%), Gaps = 68/746 (9%)
Query: 30 ESRNEDHQTYIIHMDHSHKP--SAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGF 87
+S ++ YI++M + SA L H + ++ S P +L++Y GF
Sbjct: 25 DSDDDGKNIYIVYMGRKLEDPDSAHLHHRAMLEQVVGSTFAPES----VLHTYKRSFNGF 80
Query: 88 SARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGI 147
+ +LT + +I ++ + +L TT S +FLG + ++ +++G+
Sbjct: 81 AVKLTEEEAEKIASMEGVVSVFLNEMNELHTTRSWDFLGFPLT--VPRRSQVESNIVVGV 138
Query: 148 IDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINV 207
+DTGIWPES SF D+G P P +W G CE F CNRK+IGARS+ G +
Sbjct: 139 LDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYHIGRPIS---- 191
Query: 208 SKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATD 267
D + RD GHGTHT+STAAG V + +G GTARG P A +A YKV W
Sbjct: 192 --PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW--- 246
Query: 268 TEESAASDVLAGMDQAIADGVDIMSLSLG-FDQTPYFNDVIAIASLSAIENGIVVVCAAG 326
+ + +D+LA D AIADGVDI+SLS+G + YF D IAI S A+E GI+ +AG
Sbjct: 247 NDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAG 306
Query: 327 NDGFPR--SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISY--FPESVYITDAPL 382
N G P + + +PW+ +V A T+DR F V + NG +F+G+S F Y PL
Sbjct: 307 NGG-PNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQYY----PL 361
Query: 383 YYGKNDVNKSI-------CHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAI 435
G++ N C S+NP+ + GK+V C+ S + + +D GA +
Sbjct: 362 VSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEAS--FGPHEFFKSLD--GAAGVL 417
Query: 436 FLTDTPDIDSDEYYIPSLIL-PTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVA 494
++T D +D Y +PS +L P ++R + ++ + F T + AP V
Sbjct: 418 MTSNTRDY-ADSYPLPSSVLDPNDLLATLRYIYSIRSPG---ATIFKSTTILNASAPVVV 473
Query: 495 SFSSRGPDPISPGILKPDIVAPGVDVLAA---VAPNIPFIEIGNYELVTDYALFSGTSMA 551
SFSSRGP+ + ++KPDI PGV++LAA VAP +G T + + SGTSM+
Sbjct: 474 SFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAP------VGGIRRNTLFNIISGTSMS 527
Query: 552 APHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNK 611
PH+ G+A +K + WSPAAI+SA+MTTA P+N N P +G+GH++P K
Sbjct: 528 CPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFN-----PQAEFAYGSGHVNPLK 582
Query: 612 AMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQEST----DLNYPSFA-AV 666
A+ PGL+YDA+ DYV+FLCG GY+ + ++ I + C+ +T DLNYPSF +V
Sbjct: 583 AVRPGLVYDANESDYVKFLCGQGYNTQAVRR-ITGDYSACTSGNTGRVWDLNYPSFGLSV 641
Query: 667 FTNETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEI 726
++T + F+R + +V + S YRA++ P G+ I + P+ L F F L+V
Sbjct: 642 SPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRG 701
Query: 727 DRESPRVSYGYLKWIDQYNHTVSSPV 752
+ VS L W D H V SP+
Sbjct: 702 SIKGFVVS-ASLVWSDGV-HYVRSPI 725
|
Cucumis melo (taxid: 3656) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 2 EC: 5 |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 151/592 (25%), Positives = 238/592 (40%), Gaps = 108/592 (18%)
Query: 38 TYIIHMDHSHKPSAFLTHESWHLSILKSASYPAD-------RNNMLLYSYNHVIQGFSAR 90
T I+ + A ES S LK+A A +N + Y V GFS +
Sbjct: 57 TVIVELKEKSLAEAKEAGESQSKSKLKTARTKAKNKAIKAVKNGKVNREYEQVFSGFSMK 116
Query: 91 LTPSQLSEIEKSPAHLATYPESFGKLFTTH-----------SPNFLGLKPNSGL---WPS 136
L +++ ++ A YP K SP P G W
Sbjct: 117 LPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVTISEDAVSPQMDDSAPYIGANDAWDL 176
Query: 137 ARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSF 196
G+G+ + IIDTG+ E H P + + +
Sbjct: 177 GYTGKGIKVAIIDTGV----EYNH----PDLKKNFG------------------------ 204
Query: 197 SKGLQAAGIN-VSKEYD------FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTAR 249
Q G + V +YD D + HGTH + T A N GT +
Sbjct: 205 ----QYKGYDFVDNDYDPKETPTGDPRGEATDHGTHVAGTVAAN------------GTIK 248
Query: 250 GIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFD-QTPYFNDVIA 308
G+AP A + Y+VL + +V+AG+++A+ DG D+M+LSLG P + A
Sbjct: 249 GVAPDATLLAYRVLGPGGS--GTTENVIAGVERAVQDGADVMNLSLGNSLNNPDWATSTA 306
Query: 309 IASLSAIENGIVVVCAAGNDGFPRSIHNGAPWIT----TVGAGTLDRSFHATVTLDNGLT 364
+ A+ G+V V + GN G P G+P + +VGA L + +A VT + +
Sbjct: 307 LD--WAMSEGVVAVTSNGNSG-PNGWTVGSPGTSREAISVGATQLPLNEYA-VTFGSYSS 362
Query: 365 FKGISYFPESVYITDAPLYYGKND--VNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQ 422
K + Y E D K V I ++TGKV + I +
Sbjct: 363 AKVMGYNKED----DVKALNNKEVELVEAGIGEAKDFEGKDLTGKVAVVKRGS-IAFVDK 417
Query: 423 MEEVDRAGAYAAIFLTD-TPDIDSDEYYIPSLILPT-SAGTSIRQYVTGKNKSKVKSMRF 480
+ +AGA + + + +I+++ +P + +PT + + K+ F
Sbjct: 418 ADNAKKAGAIGMVVYNNLSGEIEAN---VPGMSVPTIKLSLEDGEKLVSALKAGETKTTF 474
Query: 481 ILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVT 540
LT + VA FSSRGP + ++KPDI APGV++++ + + P G
Sbjct: 475 KLT-VSKALGEQVADFSSRGP-VMDTWMIKPDISAPGVNIVSTIPTHDPDHPYG------ 526
Query: 541 DYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEI 592
Y GTSMA+PH+AG A++K WS I++AIM TA + ++ E+
Sbjct: 527 -YGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEV 577
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 122/525 (23%), Positives = 203/525 (38%), Gaps = 103/525 (19%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFH--DKGMPPVPRRWN---GRCENGTAFSPFVCN 187
L A G G ++ +ID G E++ DK + + + E+G + +V N
Sbjct: 114 LQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV-N 172
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
K+ +SK + A V +E HGTH S +GN
Sbjct: 173 DKVAYYHDYSKDGKTA---VDQE-----------HGTHVSGILSGNAPSETKE----PYR 214
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----IMSLSLGFDQTPYF 303
G P A + + +V + +D QAI D V+ ++++S G Y
Sbjct: 215 LEGAMPEAQLLLMRVEIV-----NGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYA 269
Query: 304 N--DVIAIASLSAIENGIVVVCAAGNDG-------FPRSIH---------NGAPWITTVG 345
N D A A G+ +V +AGND P + H A TV
Sbjct: 270 NLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVA 329
Query: 346 AGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPD--E 403
+ + D+ T T+ K + + + + + + + G D +
Sbjct: 330 SYSPDKQLTETATV------KTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKD 383
Query: 404 VTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAI--------FLTDTPDIDSDEYYIPSLIL 455
V GK+ + + ID ++ +AGA + F + P++D +P+ +
Sbjct: 384 VKGKIALIERGD-IDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQ----MPAAFI 438
Query: 456 PTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVA 515
G +++ N K + L T ++ FSS G + G +KPDI A
Sbjct: 439 SRKDGLLLKE-----NPQKTITFNATPKVLPTASGTKLSRFSSWGL--TADGNIKPDIAA 491
Query: 516 PGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSP 571
PG D+L++VA N YA SGTSM+AP VAG+ LL+ + D +P
Sbjct: 492 PGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTP 538
Query: 572 AA----IRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
+ + +M++A + + E+E +P GAG +D KA
Sbjct: 539 SERLDLAKKVLMSSATAL-YDEDEKAYF--SPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 123/519 (23%), Positives = 202/519 (38%), Gaps = 91/519 (17%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFH--DKGMPPVPRRWN---GRCENGTAFSPFVCN 187
L A G G ++ +ID G E++ DK + + + E+G + +V N
Sbjct: 114 LQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV-N 172
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
K+ +SK + A V +E HGTH S +GN
Sbjct: 173 DKIAYYHDYSKDGKTA---VDQE-----------HGTHVSGILSGNAPSETKE----PYR 214
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----IMSLSLGFDQTPYF 303
G P A + + +V + +D QAI D V+ ++++S G Y
Sbjct: 215 LEGAMPEAQLLLMRVEIV-----NGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYA 269
Query: 304 N--DVIAIASLSAIENGIVVVCAAGNDG-------FPRSIHNGAPWITTVGAG--TLD-R 351
N D A A G+ +V +AGND P + H + T A TL
Sbjct: 270 NLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVA 329
Query: 352 SFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPD--EVTGKVV 409
S+ L T K + + + + + + + G D +V GK+
Sbjct: 330 SYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIA 389
Query: 410 FCDNSNRIDTYSQMEEVDRAGAYAAI--------FLTDTPDIDSDEYYIPSLILPTSAGT 461
+ + ID ++ +AGA + F + P++D +P+ + G
Sbjct: 390 LIERGD-IDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQ----MPAAFISRKDGL 444
Query: 462 SIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVL 521
+++ N K + L T ++ FSS G + G +KPDI APG D+L
Sbjct: 445 LLKE-----NPQKTITFNATPKVLPTASGTKLSRFSSWGL--TADGNIKPDIAAPGQDIL 497
Query: 522 AAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSPAA---- 573
++VA N YA SGTSM+AP VAG+ LL+ + D +P+
Sbjct: 498 SSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDL 544
Query: 574 IRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
+ +M++A + + E+E +P GAG +D KA
Sbjct: 545 AKKVLMSSATAL-YDEDEKAYF--SPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD35|C5AP_STRPQ C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 122/519 (23%), Positives = 202/519 (38%), Gaps = 91/519 (17%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFH--DKGMPPVPRRWN---GRCENGTAFSPFVCN 187
L A G G ++ +ID G E++ DK + + + ++G + +V N
Sbjct: 116 LQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKSKARYQSKEDLEKAKKDHGITYGEWV-N 174
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
K+ +SK + A V +E HGTH S +GN
Sbjct: 175 DKVAYYHDYSKDGKTA---VDQE-----------HGTHVSGILSGNAPSETKE----PYR 216
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----IMSLSLGFDQTPYF 303
G P A + + +V + +D QAI D V+ ++++S G Y
Sbjct: 217 LEGAMPEAQLLLMRVEIV-----NGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYA 271
Query: 304 N--DVIAIASLSAIENGIVVVCAAGNDG-------FPRSIHNGAPWITTVGAG--TLD-R 351
N D A A G+ +V +AGND P + H + T A TL
Sbjct: 272 NLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVA 331
Query: 352 SFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPD--EVTGKVV 409
S+ L T K + + + + + + + G+ D +V GK+
Sbjct: 332 SYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIA 391
Query: 410 FCDNSNRIDTYSQMEEVDRAGAYAAI--------FLTDTPDIDSDEYYIPSLILPTSAGT 461
+ + ID ++ +AGA + F + P++D +P+ + G
Sbjct: 392 LIERGD-IDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQ----MPAAFISRKDGL 446
Query: 462 SIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVL 521
++ N K + L T ++ FSS G + G +KPDI APG D+L
Sbjct: 447 LLKD-----NSKKTITFNATPKVLPTASGTKLSRFSSWGL--TADGNIKPDIAAPGQDIL 499
Query: 522 AAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSPAA---- 573
++VA N YA SGTSM+AP VAG+ LL+ + D +P+
Sbjct: 500 SSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDL 546
Query: 574 IRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
+ +M++A + + E+E +P GAG +D KA
Sbjct: 547 AKKVLMSSATAL-YDEDEKAYF--SPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (strain SSI-1) (taxid: 193567) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P0DD34|C5AP_STRP3 C5a peptidase OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 122/519 (23%), Positives = 202/519 (38%), Gaps = 91/519 (17%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFH--DKGMPPVPRRWN---GRCENGTAFSPFVCN 187
L A G G ++ +ID G E++ DK + + + ++G + +V N
Sbjct: 116 LQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKSKARYQSKEDLEKAKKDHGITYGEWV-N 174
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
K+ +SK + A V +E HGTH S +GN
Sbjct: 175 DKVAYYHDYSKDGKTA---VDQE-----------HGTHVSGILSGNAPSETKE----PYR 216
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD----IMSLSLGFDQTPYF 303
G P A + + +V + +D QAI D V+ ++++S G Y
Sbjct: 217 LEGAMPEAQLLLMRVEIV-----NGLADYARNYAQAIRDAVNLGAKVINMSFGNAALAYA 271
Query: 304 N--DVIAIASLSAIENGIVVVCAAGNDG-------FPRSIHNGAPWITTVGAG--TLD-R 351
N D A A G+ +V +AGND P + H + T A TL
Sbjct: 272 NLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVA 331
Query: 352 SFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPD--EVTGKVV 409
S+ L T K + + + + + + + G+ D +V GK+
Sbjct: 332 SYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIA 391
Query: 410 FCDNSNRIDTYSQMEEVDRAGAYAAI--------FLTDTPDIDSDEYYIPSLILPTSAGT 461
+ + ID ++ +AGA + F + P++D +P+ + G
Sbjct: 392 LIERGD-IDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQ----MPAAFISRKDGL 446
Query: 462 SIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVL 521
++ N K + L T ++ FSS G + G +KPDI APG D+L
Sbjct: 447 LLKD-----NSKKTITFNATPKVLPTASGTKLSRFSSWGL--TADGNIKPDIAAPGQDIL 499
Query: 522 AAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSPAA---- 573
++VA N YA SGTSM+AP VAG+ LL+ + D +P+
Sbjct: 500 SSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDL 546
Query: 574 IRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
+ +M++A + + E+E +P GAG +D KA
Sbjct: 547 AKKVLMSSATAL-YDEDEKAYF--SPRQQGAGAVDAKKA 582
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M3 (taxid: 301448) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P58099|C5AP_STRP1 C5a peptidase OS=Streptococcus pyogenes serotype M1 GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 122/515 (23%), Positives = 202/515 (39%), Gaps = 83/515 (16%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFH--DKGMPPVPRRWN---GRCENGTAFSPFVCN 187
L A G G ++ +ID G E++ DK + + + E+G + +V N
Sbjct: 114 LQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWV-N 172
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
K+ +SK + A V +E HGTH S +GN
Sbjct: 173 DKVAYYHDYSKDGKTA---VDQE-----------HGTHVSGILSGNAPSETKE----PYR 214
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFN--D 305
G P A + + +V + A + A +D A+ G ++++S G Y N D
Sbjct: 215 LEGAMPEAQLLLMRVEIVNGLADYARNYAQAIID-AVNLGAKVINMSFGNAALAYANLPD 273
Query: 306 VIAIASLSAIENGIVVVCAAGNDG-------FPRSIHNGAPWITTVGAG--TLD-RSFHA 355
A A G+ +V +AGND P + H + T A TL S+
Sbjct: 274 ETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSP 333
Query: 356 TVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPD--EVTGKVVFCDN 413
L T K + + + + + + + G D +V GK+ +
Sbjct: 334 DKQLTETATVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGMKEDDFKDVKGKIALIER 393
Query: 414 SNRIDTYSQMEEVDRAGAYAAI--------FLTDTPDIDSDEYYIPSLILPTSAGTSIRQ 465
+ ID ++ +AGA + F + P++D +P+ + G +++
Sbjct: 394 GD-IDFKDKIANAKKAGAVGVLIYDNQDKGFPIELPNVDQ----MPAAFISRKDGLLLKE 448
Query: 466 YVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525
N K + L T ++ FSS G + G +KPDI APG D+L++VA
Sbjct: 449 -----NPQKTITFNATPKVLPTASGTKLSRFSSWGL--TADGNIKPDIAAPGQDILSSVA 501
Query: 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSPAA----IRSA 577
N YA SGTSM+AP VAG+ LL+ + D +P+ +
Sbjct: 502 NN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKV 548
Query: 578 IMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
+M++A + + E+E +P GAG +D KA
Sbjct: 549 LMSSATAL-YDEDEKAYF--SPRQQGAGAVDAKKA 580
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M1 (taxid: 301447) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | ||||||
| 302142297 | 766 | unnamed protein product [Vitis vinifera] | 0.994 | 0.983 | 0.708 | 0.0 | |
| 224136792 | 760 | predicted protein [Populus trichocarpa] | 0.968 | 0.964 | 0.710 | 0.0 | |
| 147773977 | 766 | hypothetical protein VITISV_034534 [Viti | 0.994 | 0.983 | 0.707 | 0.0 | |
| 225458657 | 736 | PREDICTED: subtilisin-like protease-like | 0.955 | 0.982 | 0.716 | 0.0 | |
| 359475363 | 761 | PREDICTED: subtilisin-like protease-like | 0.970 | 0.965 | 0.519 | 0.0 | |
| 147795297 | 766 | hypothetical protein VITISV_001779 [Viti | 0.952 | 0.941 | 0.523 | 0.0 | |
| 359475365 | 849 | PREDICTED: subtilisin-like protease-like | 0.989 | 0.882 | 0.503 | 0.0 | |
| 225428832 | 769 | PREDICTED: subtilisin-like protease-like | 0.944 | 0.929 | 0.520 | 0.0 | |
| 147795298 | 769 | hypothetical protein VITISV_001780 [Viti | 0.944 | 0.929 | 0.514 | 0.0 | |
| 147801126 | 765 | hypothetical protein VITISV_029978 [Viti | 0.951 | 0.941 | 0.512 | 0.0 |
| >gi|302142297|emb|CBI19500.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1109 bits (2868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 542/765 (70%), Positives = 630/765 (82%), Gaps = 12/765 (1%)
Query: 1 MTRRITFPHLILNHA-LPWLLLLLLGSDNAESRNEDHQTYIIHMDHSHKPSAFLTHESWH 59
M+R + L +HA L WLLLLLLG +NA S E+ QTYIIHMDHS+KP +F THESWH
Sbjct: 1 MSRVRSSRSLFSHHAVLSWLLLLLLGINNAMSELEERQTYIIHMDHSYKPDSFSTHESWH 60
Query: 60 LSILKSASY-PADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGKLFT 118
LS LKS S P + MLLYSY+HV+QGFSARLTPS+LS++EKSPAH ATY E+FGKLFT
Sbjct: 61 LSTLKSVSTSPVNHKEMLLYSYSHVMQGFSARLTPSELSQLEKSPAHRATYRETFGKLFT 120
Query: 119 THSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENG 178
TH+ FLGLKPNSG+WP+A YG GVIIGIIDTGIWPES SF DKGM PVP RW G+CE G
Sbjct: 121 THTTKFLGLKPNSGIWPAASYGDGVIIGIIDTGIWPESRSFSDKGMSPVPERWKGQCEYG 180
Query: 179 TAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGV 238
TAFS CNRKL+GARSFSKGL AAG N+S E DFDSARD GHGTHTSSTAAGN+V G
Sbjct: 181 TAFSQSCCNRKLVGARSFSKGLIAAGRNISTELDFDSARDNVGHGTHTSSTAAGNYVLGA 240
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFD 298
SHFGYA+G+ARG+APRAH+AMYKVLWATDT ESAA+DVLAGMDQAI DGVDIMSLSLGFD
Sbjct: 241 SHFGYARGSARGVAPRAHLAMYKVLWATDTYESAATDVLAGMDQAIVDGVDIMSLSLGFD 300
Query: 299 QTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVT 358
QTPYF+DVIAIASLSAIE GI VVCA GNDG S HNGAPWI TVGAGT+DRSF AT+T
Sbjct: 301 QTPYFSDVIAIASLSAIEQGIFVVCATGNDGGTSSTHNGAPWIMTVGAGTIDRSFVATMT 360
Query: 359 LDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRID 418
L NGL +G SYFP+S+YIT+APLYYG+ D NK C L +L+P+EV GKVV CD S D
Sbjct: 361 LGNGLVVEGTSYFPQSIYITNAPLYYGRGDANKETCKLSALDPNEVAGKVVLCD-STETD 419
Query: 419 TYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSM 478
Y+Q++EV+ AGAYA IF+TD +D DEY IPSL+LPT++GTS+ +YVTG + + VK++
Sbjct: 420 VYTQIQEVESAGAYAGIFITDNLLLDPDEYSIPSLVLPTNSGTSVLEYVTGMSNATVKAL 479
Query: 479 RFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYEL 538
RF+ T+LGTKPAP VA FSSRGPDPISPG+LKPDI+APGVDVLAAVAPN+PF++IG+Y+L
Sbjct: 480 RFVSTKLGTKPAPQVAYFSSRGPDPISPGVLKPDILAPGVDVLAAVAPNVPFMQIGDYDL 539
Query: 539 VTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVN-----FAENEIG 593
VTDYALFSGTSMAAPHVAGVAALLKA+HRDWSPAAIRSAIMTTA ++ F + G
Sbjct: 540 VTDYALFSGTSMAAPHVAGVAALLKAVHRDWSPAAIRSAIMTTANTIDNIGSAFRDQWTG 599
Query: 594 VVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQ 653
+PA+PLDFGAGHI+PNKAMDPGLI+D D QDYVEFLCGLGY KQM A++RRNQWNCS
Sbjct: 600 -LPASPLDFGAGHINPNKAMDPGLIFDMDLQDYVEFLCGLGYTRKQMSAILRRNQWNCSG 658
Query: 654 ESTDLNYPSFAAVFTNETTA---KNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLK 710
+ DLNYPSF A+FT + +NFSRV+ NVG + + Y+AV+E P GM I+ EPS L
Sbjct: 659 KPNDLNYPSFVAIFTKGAESPKVRNFSRVLTNVGNDTATYQAVVEVPTGMRIKTEPSILT 718
Query: 711 FTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQYNHTVSSPVVAI 755
FT KYQ F ++VEID ++P V+YGYLKWIDQ+ HTVSSP+VAI
Sbjct: 719 FTSKYQKRGFFVTVEIDADAPSVTYGYLKWIDQHKHTVSSPIVAI 763
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224136792|ref|XP_002326946.1| predicted protein [Populus trichocarpa] gi|222835261|gb|EEE73696.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1107 bits (2863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/740 (71%), Positives = 616/740 (83%), Gaps = 7/740 (0%)
Query: 24 LGSDNAESRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHV 83
+G NAE ++E++QTYI+HMD SHKP+ FLTHESWH L+S S PAD LYSY+HV
Sbjct: 20 IGISNAELKSEEYQTYIVHMDSSHKPATFLTHESWHRFTLRSLSNPADGEGTFLYSYSHV 79
Query: 84 IQGFSARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGV 143
+QGFSARLTPSQL+EIEKSPAH+ TY ESFGKLFTTHSP FLGL+ NSG+ P+A G+GV
Sbjct: 80 MQGFSARLTPSQLAEIEKSPAHIGTYRESFGKLFTTHSPKFLGLRQNSGILPTASRGEGV 139
Query: 144 IIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAA 203
IIGIIDTGIWPESESFHDKGMPPVP+RW G+CENGTAFSP CNRKLIGARSFSKGL AA
Sbjct: 140 IIGIIDTGIWPESESFHDKGMPPVPQRWKGKCENGTAFSPSACNRKLIGARSFSKGLIAA 199
Query: 204 GINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVL 263
G +S EYD+DSARDFFGHGTHTSSTAAG++V G +HFGYA+GTARG+AP AHVAMYKVL
Sbjct: 200 GRKISTEYDYDSARDFFGHGTHTSSTAAGSYVLGANHFGYARGTARGVAPAAHVAMYKVL 259
Query: 264 WATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVC 323
+ATDTEESAA+DVLAGMDQAIAD VDIMSLSLGF QTPYFNDVIAIASLSA+E I VVC
Sbjct: 260 FATDTEESAATDVLAGMDQAIADEVDIMSLSLGFTQTPYFNDVIAIASLSAMEKNIFVVC 319
Query: 324 AAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLY 383
AAGNDG S +NGAPWITTVGAGTLDRSF AT+TL+NGLTF+G SYFP+S+YI D PLY
Sbjct: 320 AAGNDGAYNSTYNGAPWITTVGAGTLDRSFTATMTLENGLTFEGTSYFPQSIYIEDVPLY 379
Query: 384 YGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDI 443
YGK++ +KSIC+ G+LN EV K+V CDNS ID Q EE++R GAYA IF+TD +
Sbjct: 380 YGKSNGSKSICNYGALNRSEVHRKIVLCDNSTTIDVEGQKEELERVGAYAGIFMTDFSLL 439
Query: 444 DSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDP 503
D ++Y IPS++LPT +G +R+YV +KVKSM F+ T LG KPAP VA FSSRGPDP
Sbjct: 440 DPEDYSIPSIVLPTVSGALVREYVANVTAAKVKSMAFLSTNLGVKPAPQVAYFSSRGPDP 499
Query: 504 ISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLK 563
I+PG+LKPDI+APGVDVLAA+APN PF+E+G Y+L TDYAL+SGTSM+APHVAGVAALLK
Sbjct: 500 ITPGVLKPDILAPGVDVLAAIAPNKPFMELGKYDLTTDYALYSGTSMSAPHVAGVAALLK 559
Query: 564 AIHRDWSPAAIRSAIMTTAYPVN----FAENEIGVVPATPLDFGAGHIDPNKAMDPGLIY 619
IH +W+PAAIRSA+MTTAY + +N++ +PATPLDFGAGHI+PNKAMDPGLIY
Sbjct: 560 NIHPEWNPAAIRSALMTTAYTKDNTRTTMKNQMINLPATPLDFGAGHINPNKAMDPGLIY 619
Query: 620 DADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQESTDLNYPSFAAVFTNET---TAKNF 676
D + QDYV FLCGLGY KQM AV+RRNQW+CSQE TDLNYPS A+FTN+T T K F
Sbjct: 620 DMNVQDYVNFLCGLGYTAKQMSAVLRRNQWSCSQEPTDLNYPSITAIFTNKTSSPTTKTF 679
Query: 677 SRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYG 736
SRVV NVG +DS+Y+A +E P M I++EP TL FT+K Q F +S++ID ++P V+YG
Sbjct: 680 SRVVTNVGDDDSVYQATIEIPKEMRIKVEPRTLSFTKKNQKQGFVISIDIDEDAPTVTYG 739
Query: 737 YLKWIDQYNHTVSSPVVAIK 756
YLKWIDQ+NHTVSSPVVAIK
Sbjct: 740 YLKWIDQHNHTVSSPVVAIK 759
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147773977|emb|CAN60788.1| hypothetical protein VITISV_034534 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1107 bits (2862), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 541/765 (70%), Positives = 629/765 (82%), Gaps = 12/765 (1%)
Query: 1 MTRRITFPHLILNHA-LPWLLLLLLGSDNAESRNEDHQTYIIHMDHSHKPSAFLTHESWH 59
M+R + L +HA L WLLLLLLG +NA S E+ QTYIIHMDHS+KP +F THESWH
Sbjct: 1 MSRVRSSRSLFSHHAVLSWLLLLLLGINNAMSELEERQTYIIHMDHSYKPDSFSTHESWH 60
Query: 60 LSILKSASY-PADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGKLFT 118
LS LKS S P + MLLYSY+HV+QGFSARLTPS+LS++EKSPAH ATY E+FGKLFT
Sbjct: 61 LSTLKSVSTSPVNHKEMLLYSYSHVMQGFSARLTPSELSQLEKSPAHRATYRETFGKLFT 120
Query: 119 THSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENG 178
TH+ FLGLKPNSG+WP+A YG GVIIGIIDTGIWPES SF DKGM PVP RW G+CE G
Sbjct: 121 THTTKFLGLKPNSGIWPAASYGDGVIIGIIDTGIWPESRSFSDKGMSPVPERWKGQCEYG 180
Query: 179 TAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGV 238
TAFS CNRKL+GARSFSKGL AAG N+S E DFDSARD GHGTHTSSTAAGN+V G
Sbjct: 181 TAFSQSCCNRKLVGARSFSKGLIAAGRNISTELDFDSARDNVGHGTHTSSTAAGNYVLGA 240
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFD 298
SHFGYA+G+ARG+APRAH+AMYKVLWATDT ESAA+DVLAGMDQAI DGVDIMSLSLGFD
Sbjct: 241 SHFGYARGSARGVAPRAHLAMYKVLWATDTYESAATDVLAGMDQAIVDGVDIMSLSLGFD 300
Query: 299 QTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVT 358
QTPYF+DVIAIASLSAIE GI VVCA GNDG S HNGAPWI TVGAGT+DRSF AT+T
Sbjct: 301 QTPYFSDVIAIASLSAIEQGIFVVCATGNDGGTSSTHNGAPWIMTVGAGTIDRSFVATMT 360
Query: 359 LDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRID 418
L NGL +G SYFP+S+YIT+APLYYG+ D NK C L +L+P+EV GKVV CD S D
Sbjct: 361 LGNGLVVEGTSYFPQSIYITNAPLYYGRGDANKETCKLSALDPNEVAGKVVLCD-STETD 419
Query: 419 TYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSM 478
Y+Q++EV+ AGAYA IF+TD +D DEY IPSL+LPT++GTS+ +YVTG + + VK++
Sbjct: 420 VYTQIQEVESAGAYAGIFITDNLLLDPDEYSIPSLVLPTNSGTSVLEYVTGMSNATVKAL 479
Query: 479 RFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYEL 538
RF+ T+LGTKPAP VA FSSRGPDPISPG+LKPDI+APGVDVLAAVAPN+PF++IG+Y+L
Sbjct: 480 RFVSTKLGTKPAPQVAYFSSRGPDPISPGVLKPDILAPGVDVLAAVAPNVPFMQIGDYDL 539
Query: 539 VTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVN-----FAENEIG 593
VTDYALFSGTSMAAPHVAGVAALLKA+HRDWSPAAIRSAIMTTA ++ F + G
Sbjct: 540 VTDYALFSGTSMAAPHVAGVAALLKAVHRDWSPAAIRSAIMTTANTIDNIGSAFRDQWTG 599
Query: 594 VVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQ 653
+PA+PLDFGAGHI+PNKAMDPGLI+D D QDYVEFLCGLGY KQM A++RRNQWNCS
Sbjct: 600 -LPASPLDFGAGHINPNKAMDPGLIFDMDLQDYVEFLCGLGYTRKQMSAILRRNQWNCSG 658
Query: 654 ESTDLNYPSFAAVFTNETTA---KNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLK 710
+ DLNYPSF A+FT + +NFSRV+ NVG + + Y+A +E P GM I+ EPS L
Sbjct: 659 KPNDLNYPSFVAIFTKGAESPKVRNFSRVLTNVGNDTATYQAXVEVPTGMRIKTEPSILT 718
Query: 711 FTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQYNHTVSSPVVAI 755
FT KYQ F ++VEID ++P V+YGYLKWIDQ+ HTVSSP+VAI
Sbjct: 719 FTSKYQKRGFFVTVEIDADAPSVTYGYLKWIDQHKHTVSSPIVAI 763
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225458657|ref|XP_002282856.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 526/734 (71%), Positives = 610/734 (83%), Gaps = 11/734 (1%)
Query: 31 SRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASY-PADRNNMLLYSYNHVIQGFSA 89
S E+ QTYIIHMDHS+KP +F THESWHLS LKS S P + MLLYSY+HV+QGFSA
Sbjct: 2 SELEERQTYIIHMDHSYKPDSFSTHESWHLSTLKSVSTSPVNHKEMLLYSYSHVMQGFSA 61
Query: 90 RLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGIID 149
RLTPS+LS++EKSPAH ATY E+FGKLFTTH+ FLGLKPNSG+WP+A YG GVIIGIID
Sbjct: 62 RLTPSELSQLEKSPAHRATYRETFGKLFTTHTTKFLGLKPNSGIWPAASYGDGVIIGIID 121
Query: 150 TGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSK 209
TGIWPES SF DKGM PVP RW G+CE GTAFS CNRKL+GARSFSKGL AAG N+S
Sbjct: 122 TGIWPESRSFSDKGMSPVPERWKGQCEYGTAFSQSCCNRKLVGARSFSKGLIAAGRNIST 181
Query: 210 EYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE 269
E DFDSARD GHGTHTSSTAAGN+V G SHFGYA+G+ARG+APRAH+AMYKVLWATDT
Sbjct: 182 ELDFDSARDNVGHGTHTSSTAAGNYVLGASHFGYARGSARGVAPRAHLAMYKVLWATDTY 241
Query: 270 ESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
ESAA+DVLAGMDQAI DGVDIMSLSLGFDQTPYF+DVIAIASLSAIE GI VVCA GNDG
Sbjct: 242 ESAATDVLAGMDQAIVDGVDIMSLSLGFDQTPYFSDVIAIASLSAIEQGIFVVCATGNDG 301
Query: 330 FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDV 389
S HNGAPWI TVGAGT+DRSF AT+TL NGL +G SYFP+S+YIT+APLYYG+ D
Sbjct: 302 GTSSTHNGAPWIMTVGAGTIDRSFVATMTLGNGLVVEGTSYFPQSIYITNAPLYYGRGDA 361
Query: 390 NKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYY 449
NK C L +L+P+EV GKVV CD S D Y+Q++EV+ AGAYA IF+TD +D DEY
Sbjct: 362 NKETCKLSALDPNEVAGKVVLCD-STETDVYTQIQEVESAGAYAGIFITDNLLLDPDEYS 420
Query: 450 IPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGIL 509
IPSL+LPT++GTS+ +YVTG + + VK++RF+ T+LGTKPAP VA FSSRGPDPISPG+L
Sbjct: 421 IPSLVLPTNSGTSVLEYVTGMSNATVKALRFVSTKLGTKPAPQVAYFSSRGPDPISPGVL 480
Query: 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDW 569
KPDI+APGVDVLAAVAPN+PF++IG+Y+LVTDYALFSGTSMAAPHVAGVAALLKA+HRDW
Sbjct: 481 KPDILAPGVDVLAAVAPNVPFMQIGDYDLVTDYALFSGTSMAAPHVAGVAALLKAVHRDW 540
Query: 570 SPAAIRSAIMTTAYPVN-----FAENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQ 624
SPAAIRSAIMTTA ++ F + G +PA+PLDFGAGHI+PNKAMDPGLI+D D Q
Sbjct: 541 SPAAIRSAIMTTANTIDNIGSAFRDQWTG-LPASPLDFGAGHINPNKAMDPGLIFDMDLQ 599
Query: 625 DYVEFLCGLGYDEKQMKAVIRRNQWNCSQESTDLNYPSFAAVFTNETTA---KNFSRVVK 681
DYVEFLCGLGY KQM A++RRNQWNCS + DLNYPSF A+FT + +NFSRV+
Sbjct: 600 DYVEFLCGLGYTRKQMSAILRRNQWNCSGKPNDLNYPSFVAIFTKGAESPKVRNFSRVLT 659
Query: 682 NVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWI 741
NVG + + Y+AV+E P GM I+ EPS L FT KYQ F ++VEID ++P V+YGYLKWI
Sbjct: 660 NVGNDTATYQAVVEVPTGMRIKTEPSILTFTSKYQKRGFFVTVEIDADAPSVTYGYLKWI 719
Query: 742 DQYNHTVSSPVVAI 755
DQ+ HTVSSP+VAI
Sbjct: 720 DQHKHTVSSPIVAI 733
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475363|ref|XP_002282304.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/758 (51%), Positives = 516/758 (68%), Gaps = 23/758 (3%)
Query: 14 HALPWLLLLLLGSDNAESRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRN 73
+P+ LL L + + S ED TYIIHMD S P F +H W+ S L S S P
Sbjct: 2 ECIPYKLLFLFLA-LSTSVAEDLGTYIIHMDKSAMPMTFSSHHDWYRSTLSSMSSPDGIL 60
Query: 74 NMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGL 133
LY+YNHV+ GFSA L+ + L ++EK HLATYP+SFGKL TTH+P FLGL+ G
Sbjct: 61 PTHLYTYNHVLDGFSAVLSRAHLDQLEKMAGHLATYPDSFGKLHTTHTPKFLGLEKKVGS 120
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
WP ++G+ +IIGI+D+GIWPESESF DKGM PVP RW G CE+G F+ CNRKLIGA
Sbjct: 121 WPKGKFGEDMIIGILDSGIWPESESFKDKGMAPVPDRWRGACESGVEFNSSYCNRKLIGA 180
Query: 194 RSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAP 253
RSFSKG++ G+N+S D+DS RDF GHGTHTSSTAAG+ V ++FGYAKGTA G+AP
Sbjct: 181 RSFSKGMKQRGLNISLPDDYDSPRDFLGHGTHTSSTAAGSPVRDANYFGYAKGTATGVAP 240
Query: 254 RAHVAMYKVLWATDTE--ESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIAS 311
+A +AMYKV + +D+ E+AASD LAGMDQAIADGVD+MSLSLGF +T + + IA+ +
Sbjct: 241 KARLAMYKVFFFSDSSDPEAAASDTLAGMDQAIADGVDLMSLSLGFFETTFDENPIAVGA 300
Query: 312 LSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNG-LTFKGIS 369
+A+E GI V C+AGN G +I NGAPWITT+GAGT+DR + A VTL NG L +G S
Sbjct: 301 FAAMEKGIFVSCSAGNAGPHGYTIFNGAPWITTIGAGTIDRDYAADVTLGNGILRVRGKS 360
Query: 370 YFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRA 429
+PE V+I++ PLY+G + +K C +L P EV GK+VFCD Q +E++R
Sbjct: 361 VYPEDVFISNVPLYFGHGNASKETCDYNALEPQEVAGKIVFCDFPGGY----QQDEIERV 416
Query: 430 GAYAAIFLTDTPD-IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTK 488
GA AIF TD+ + + ++YIP + + G ++ Y+ K+++ V ++F T LG K
Sbjct: 417 GAAGAIFSTDSQNFLGPRDFYIPFVAVSHKDGDLVKDYII-KSENPVVDIKFQKTVLGAK 475
Query: 489 PAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGT 548
PAP VA FSSRGP +P ILKPDI+APGVD+LAA APNI IG+ L+TDYAL SGT
Sbjct: 476 PAPQVAWFSSRGPSRRAPMILKPDILAPGVDILAAWAPNIGITPIGDDYLLTDYALLSGT 535
Query: 549 SMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEI----GVVPATPLDFGA 604
SMA+PH GVAALLK+ H DWSPAAIRSA+MTTAY ++ + I V TPLDFGA
Sbjct: 536 SMASPHAVGVAALLKSAHPDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGA 595
Query: 605 GHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQESTDLNYPSFA 664
GHI+PN AMDPGL+YD + QDY+ FLCGL Y KQ+K + RR++++C Q + DLNYPSF
Sbjct: 596 GHINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFM 655
Query: 665 AVFTN-ETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALS 723
+ N TT+ F RV+ NV ++Y A ++ P+GM + ++PS + F KY +F ++
Sbjct: 656 VLLNNTNTTSYTFKRVLTNVENTHTVYHASVKQPSGMKVSVQPSIVSFAGKYSKAEFNMT 715
Query: 724 VEIDRESPRV------SYGYLKWID-QYNHTVSSPVVA 754
VEI+ R ++GYL W + H VSSP+V+
Sbjct: 716 VEINLGDARPQSDYIGNFGYLTWWEANGTHVVSSPIVS 753
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795297|emb|CAN64995.1| hypothetical protein VITISV_001779 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/739 (52%), Positives = 511/739 (69%), Gaps = 18/739 (2%)
Query: 31 SRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSAR 90
S +ED +TYI+HMD S P F +H W+LS L S P LY+YNHV+ GFSA
Sbjct: 23 SMSEDIRTYIVHMDKSAMPIPFSSHHDWYLSTLSSFYSPDGILPTHLYTYNHVLDGFSAV 82
Query: 91 LTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDT 150
L+ S L ++EK P HLATYPE+FG + TTH+P FLGL+ N G WP +G+ ++IGI+DT
Sbjct: 83 LSQSHLDQLEKMPGHLATYPETFGTIHTTHTPKFLGLENNFGSWPGGNFGEDMVIGILDT 142
Query: 151 GIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210
GIWPESESF DKGM PVP RW G CE+G F+ +CNRKLIGARSFSK L+ G+N+S
Sbjct: 143 GIWPESESFQDKGMAPVPDRWRGACESGAEFNSSLCNRKLIGARSFSKALKQRGLNISTP 202
Query: 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE 270
D+DS RDF+GHGTHTSSTAAG+ V ++FGYAKGTA GIAP+A +AMYKVL+ DT E
Sbjct: 203 DDYDSPRDFYGHGTHTSSTAAGSPVADANYFGYAKGTATGIAPKARLAMYKVLFYNDTYE 262
Query: 271 SAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG- 329
SAASD LAG+DQAIADGVD+MSLSLGF +T + + IA+ + +A+E GI V C+AGN G
Sbjct: 263 SAASDTLAGIDQAIADGVDLMSLSLGFSETTFEENPIAVGAFAAMEKGIFVSCSAGNSGP 322
Query: 330 FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNG-LTFKGISYFPESVYITDAPLYYGKND 388
+I NGAPWITT+GAGT+DR + A V+L NG L +G S +P+ + I+ PLY+G +
Sbjct: 323 HGYTIFNGAPWITTIGAGTIDRDYAADVSLGNGILNIRGKSVYPDDLLISQVPLYFGHGN 382
Query: 389 VNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS-DE 447
+K +C +++ + GK+VFCD S Q +E++R GA AIF TD+ S +
Sbjct: 383 RSKELCEDNAIDQKDAAGKIVFCDFSESGGI--QSDEMERVGAAGAIFSTDSGIFLSPSD 440
Query: 448 YYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPG 507
+Y+P + + G ++ Y+ K+++ V ++F +T LG KPAP VA FSSRGP +P
Sbjct: 441 FYMPFVAVSPKDGDLVKDYII-KSENPVVDIKFQITVLGAKPAPMVAWFSSRGPSRRAPM 499
Query: 508 ILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR 567
ILKPDI+APGVD+LAA APN IG+ L+TDYAL SGTSMA+PH GVAALLK+ H
Sbjct: 500 ILKPDILAPGVDILAAWAPNRGITPIGDDYLLTDYALLSGTSMASPHAVGVAALLKSAHP 559
Query: 568 DWSPAAIRSAIMTTAYPVNFAENEI----GVVPATPLDFGAGHIDPNKAMDPGLIYDADF 623
DWSPAA+RSA+MTTAY ++ + I V TPLDFGAGHI+PN AMDPGL+YD +
Sbjct: 560 DWSPAAVRSAMMTTAYLLDNTQGPIMDMTTGVSGTPLDFGAGHINPNMAMDPGLVYDIEA 619
Query: 624 QDYVEFLCGLGYDEKQMKAVIRRNQWNCSQESTDLNYPSFAAVFTN-ETTAKNFSRVVKN 682
QDY+ FLCGL Y KQ+K + RR++++C Q + DLNYPSF + N TT+ F RV+ N
Sbjct: 620 QDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYTFKRVLTN 679
Query: 683 VGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRV------SYG 736
V S+Y+A ++ P+GM + + PST+ FT +Y +F ++VEI+ R ++G
Sbjct: 680 VENTYSVYQASVKQPSGMKVTVLPSTVSFTGRYSKAEFNMTVEINLGDARPQSDYIGNFG 739
Query: 737 YLKWID-QYNHTVSSPVVA 754
YL W + H VSSP+V+
Sbjct: 740 YLTWWEANGTHVVSSPIVS 758
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359475365|ref|XP_002282292.2| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/780 (50%), Positives = 522/780 (66%), Gaps = 31/780 (3%)
Query: 3 RRITFPHLILNHALPWLLLLLLGSD-------------NAESRNEDHQTYIIHMDHSHKP 49
+ I P L ++P ++LLL+ S S +ED +TYI+HMD S P
Sbjct: 65 KDIDPPKFSLCMSMPNIVLLLMVSFFFFSFFLLVLSTVTTSSMSEDIRTYIVHMDKSAMP 124
Query: 50 SAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATY 109
F +H W+LS L S P LY+YNHV+ GFSA L+ S L ++EK HLATY
Sbjct: 125 IPFSSHHDWYLSTLSSFYSPDGILPTHLYTYNHVLDGFSAVLSQSHLDQLEKMSGHLATY 184
Query: 110 PESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPR 169
PE+FG + TTH+P FLGL+ N G WP +G+ ++IGI+DTGIWPESESF DKGM PVP
Sbjct: 185 PETFGTIHTTHTPKFLGLENNFGSWPGGNFGEDMVIGILDTGIWPESESFQDKGMAPVPD 244
Query: 170 RWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSST 229
RW G CE+G F+ +CNRKLIGARSFSK L+ G+N+S D+DS RDF+GHGTHTSST
Sbjct: 245 RWRGACESGVEFNSSLCNRKLIGARSFSKALKQRGLNISTPDDYDSPRDFYGHGTHTSST 304
Query: 230 AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD 289
AAG+ V ++FGYAKGTA GIAP+A +AMYKVL+ DT ESAASD LAG+DQAIADGVD
Sbjct: 305 AAGSPVADANYFGYAKGTATGIAPKARLAMYKVLFYNDTYESAASDTLAGIDQAIADGVD 364
Query: 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGT 348
+MSLSLGF +T + + IA+ + +A+E GI V C+AGN G +I NGAPWITT+GAGT
Sbjct: 365 LMSLSLGFSETTFEENPIAVGAFAAMEKGIFVSCSAGNSGPHGYTIFNGAPWITTIGAGT 424
Query: 349 LDRSFHATVTLDNG-LTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGK 407
+D + A V+L NG L +G S +PE + I+ PLY+G + +K +C +++P + GK
Sbjct: 425 IDLDYAADVSLGNGILNIRGKSVYPEDLLISQVPLYFGHGNRSKELCEDNAIDPKDAAGK 484
Query: 408 VVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS-DEYYIPSLILPTSAGTSIRQY 466
+VFCD S Q +E++R GA AIF TD+ S ++Y+P + + G ++ Y
Sbjct: 485 IVFCDFSESGGI--QSDEMERVGAAGAIFSTDSGIFLSPSDFYMPFVAVSPKDGDLVKDY 542
Query: 467 VTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAP 526
+ K+++ V ++F +T LG KPAP VA FSSRGP +P ILKPDI+APGVD+LAA A
Sbjct: 543 II-KSENPVVDIKFQITVLGAKPAPMVAWFSSRGPSRRAPMILKPDILAPGVDILAAWAS 601
Query: 527 NIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVN 586
N IG+Y L+T+YAL SGTSMA+PH GVAALLK+ H DWSPAA+RSA+MTTAY ++
Sbjct: 602 NRGITPIGDYYLLTNYALLSGTSMASPHAVGVAALLKSAHPDWSPAAVRSAMMTTAYLLD 661
Query: 587 FAENEI----GVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKA 642
+ I V TPLDFGAGHI+PN AMDPGL+YD + QDY+ FLCGL Y KQ+K
Sbjct: 662 NTQGPIMDMTTGVAGTPLDFGAGHINPNMAMDPGLVYDIEAQDYINFLCGLNYTSKQIKI 721
Query: 643 VIRRNQWNCSQESTDLNYPSFAAVFTN-ETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMN 701
+ RR++++C Q + DLNYPSF + N TT+ F RV+ NV S+Y A ++ P+GM
Sbjct: 722 ITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYTFKRVLTNVENTHSVYHASVKLPSGMK 781
Query: 702 IRIEPSTLKFTQKYQLLDFALSVEIDRESPRV------SYGYLKWID-QYNHTVSSPVVA 754
+ ++PS + F KY +F ++VEI+ R ++GYL W + H VSSP+V+
Sbjct: 782 VSVQPSVVSFAGKYSKAEFNMTVEINLGDARPQSDYIGNFGYLTWWEANGTHVVSSPIVS 841
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225428832|ref|XP_002282297.1| PREDICTED: subtilisin-like protease-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/740 (52%), Positives = 513/740 (69%), Gaps = 25/740 (3%)
Query: 35 DHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPS 94
D +YIIHMD S P F +H W++S L S S P LY+YNHV+ GFSA L+ +
Sbjct: 27 DVGSYIIHMDKSAMPMTFSSHHDWYMSTLSSISSPDGSLPTHLYTYNHVLDGFSAVLSKA 86
Query: 95 QLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWP 154
L ++EK P HLATYP+SFGKL TTHSP FLGL+ NSG WP ++G+ +IIGI+DTG+WP
Sbjct: 87 HLDQLEKMPGHLATYPDSFGKLHTTHSPKFLGLEKNSGAWPEGKFGEDMIIGILDTGVWP 146
Query: 155 ESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSK-EYDF 213
ESESF DKGM PVP+RW G CE+G AF+ CNRKLIGARSFS+GL+ G+NVS D+
Sbjct: 147 ESESFRDKGMGPVPKRWRGACESGVAFNSSYCNRKLIGARSFSEGLKRRGLNVSAPPDDY 206
Query: 214 DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE--ES 271
DS RDF GHGTHTSSTAAG+ V G ++FGYA+GTA GI+P+A +AMYKV++ +D ++
Sbjct: 207 DSPRDFHGHGTHTSSTAAGSPVRGANYFGYAEGTAIGISPKARLAMYKVIFLSDLTDGDA 266
Query: 272 AASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-F 330
AASD LAGMDQAIADGVD+MSLSLGF++T + + IA+ + SA+E GI V C+AGN G
Sbjct: 267 AASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIAVGAFSAMEKGIFVSCSAGNSGPD 326
Query: 331 PRSIHNGAPWITTVGAGTLDRSFHATVTLDNG-LTFKGISYFPESVYITDAPLYYGKNDV 389
++ NGAPWITT+GAGT+DR + A V L NG LT +G S +PE++ I++ LY+G +
Sbjct: 327 AYTMFNGAPWITTIGAGTIDRDYAADVKLGNGILTVRGKSVYPENLLISNVSLYFGYGNR 386
Query: 390 NKSICHLGSLNPDEVTGKVVFCD--NSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-IDSD 446
+K +C G+L+P++V GK+VFCD S I +Y EV A AIF +D+ +
Sbjct: 387 SKELCEYGALDPEDVAGKIVFCDIPESGGIQSY----EVGGVEAAGAIFSSDSQNSFWPS 442
Query: 447 EYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISP 506
++ +P + + G ++ Y+ K+++ V ++F +T LG KPAP VA FSSRGP +P
Sbjct: 443 DFDMPYVAVSPKDGDLVKDYII-KSQNPVVDIKFQITVLGAKPAPQVAEFSSRGPGSRAP 501
Query: 507 GILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH 566
ILKPD++APGV +LAA APN I + L++DY L SGTSMA+PH GVAALLKA H
Sbjct: 502 MILKPDVLAPGVHILAAWAPNRAIQPIRDEYLLSDYGLLSGTSMASPHAVGVAALLKAAH 561
Query: 567 RDWSPAAIRSAIMTTAYPVNFAENEI----GVVPATPLDFGAGHIDPNKAMDPGLIYDAD 622
DWSPAAIRSA+MTTAY ++ + I V TPLDFGAGHI+PN AMDPGL+YD +
Sbjct: 562 PDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINPNMAMDPGLVYDIE 621
Query: 623 FQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQESTDLNYPSFAAVFTN-ETTAKNFSRVVK 681
QDY+ FLCGL Y KQ+K + RR++++C Q + DLNYPSF + N TT+ F RV+
Sbjct: 622 AQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYTFKRVLT 681
Query: 682 NVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEID--RESPRV----SY 735
NV S+Y+A ++ P+GM + + PST+ FT +Y +F ++VEI+ P+ +Y
Sbjct: 682 NVEDTYSVYQASVKQPSGMKVTVLPSTVSFTGRYSKAEFNMTVEINLGDAGPQSDYIGNY 741
Query: 736 GYLKWID-QYNHTVSSPVVA 754
GYL W + H V SP+V+
Sbjct: 742 GYLTWREVNGTHVVRSPIVS 761
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147795298|emb|CAN64996.1| hypothetical protein VITISV_001780 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 734 bits (1894), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/740 (51%), Positives = 509/740 (68%), Gaps = 25/740 (3%)
Query: 35 DHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPS 94
D +YIIHMD S P F +H W++S L S S P LY+YNHV+ GFSA ++ +
Sbjct: 27 DVGSYIIHMDKSAMPMTFSSHHDWYMSTLSSISSPDGSLPTHLYTYNHVLDGFSAVMSKA 86
Query: 95 QLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWP 154
L ++EK P HLATYP+SFGKL TTHSP FLGL+ NSG WP ++G+ +II I+DTG+WP
Sbjct: 87 HLDQLEKMPGHLATYPDSFGKLHTTHSPKFLGLEKNSGAWPEGKFGEDMIIAILDTGVWP 146
Query: 155 ESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSK-EYDF 213
ESESF DKGM PVP+RW G CE+G F CNRKLIGARSFS+GL+ G+NVS D+
Sbjct: 147 ESESFRDKGMGPVPKRWRGACESGVEFKSSYCNRKLIGARSFSEGLKRRGLNVSAPPDDY 206
Query: 214 DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE--ES 271
DS RDF GHGTHTSSTAAG+ V G ++FGYA+GTA GI+P+A +AMYKV++ +D ++
Sbjct: 207 DSPRDFHGHGTHTSSTAAGSPVRGANYFGYAEGTAIGISPKARLAMYKVIFLSDLRDADA 266
Query: 272 AASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-F 330
AASD LAGMDQAIADGVD+MSLSLGF++T + + IA+ + SA+E GI V C+AGN G
Sbjct: 267 AASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIALGAFSAMEKGIFVSCSAGNSGPD 326
Query: 331 PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGL-TFKGISYFPESVYITDAPLYYGKNDV 389
++ NGAPWITT+GAGT+DR + A V L NG+ T +G S +PE++ I++ LY+G +
Sbjct: 327 AYTMFNGAPWITTIGAGTIDRDYAADVKLGNGIFTVRGKSVYPENLLISNVSLYFGYGNR 386
Query: 390 NKSICHLGSLNPDEVTGKVVFCD--NSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-IDSD 446
+K +C G+L+P++V GK+VFCD S I +Y EV A AIF +D+ +
Sbjct: 387 SKELCEYGALDPEDVAGKIVFCDIPESGGIQSY----EVGGVEAAGAIFSSDSQNSFWPS 442
Query: 447 EYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISP 506
++ +P + + G ++ Y+ K+++ V ++F +T LG KPAP VA FSSRGP +P
Sbjct: 443 DFDMPYVAVSPKDGDLVKDYII-KSQNPVVDIKFQITVLGAKPAPQVAEFSSRGPGSRAP 501
Query: 507 GILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH 566
ILKPD++APGV +LAA APN I + L++DY L SGTSMA+PH GVAALLKA H
Sbjct: 502 MILKPDVLAPGVHILAAWAPNRAIQPIRDEYLLSDYGLLSGTSMASPHAVGVAALLKAAH 561
Query: 567 RDWSPAAIRSAIMTTAYPVNFAENEI----GVVPATPLDFGAGHIDPNKAMDPGLIYDAD 622
DWSPAAIRSA+MTTAY ++ + I V TPLDFGAGHI+PN AMDPGL+YD +
Sbjct: 562 PDWSPAAIRSAMMTTAYLLDNTQGPIMDMTTGVAGTPLDFGAGHINPNMAMDPGLVYDIE 621
Query: 623 FQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQESTDLNYPSFAAVFTN-ETTAKNFSRVVK 681
QDY+ FLCGL Y KQ+K + RR++++C Q + DLNYPSF + N TT+ F RV+
Sbjct: 622 AQDYINFLCGLNYTSKQIKIITRRSKFSCDQANLDLNYPSFMVLLNNTNTTSYTFKRVLT 681
Query: 682 NVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEID--RESPRVSY---- 735
NV S+Y+A ++ P+GM + + PST+ FT +Y +F ++VEI+ P+ Y
Sbjct: 682 NVENTYSVYQASVKQPSGMKVTVLPSTVSFTGRYSKAEFNMTVEINLGDAXPQSDYIGNX 741
Query: 736 GYLKWID-QYNHTVSSPVVA 754
GYL W + H V SP+V+
Sbjct: 742 GYLTWREVNGTHVVRSPIVS 761
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147801126|emb|CAN68827.1| hypothetical protein VITISV_029978 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 720 bits (1858), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/747 (51%), Positives = 508/747 (68%), Gaps = 27/747 (3%)
Query: 29 AESRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFS 88
+ S ED TYIIHMD S P F +H W+LS+L S S + LY+YNHV+ GFS
Sbjct: 21 SASMAEDLGTYIIHMDKSTMPMTFSSHHDWYLSMLSSMSSSDGVHPTHLYTYNHVLDGFS 80
Query: 89 ARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNS-GLWPSARYGQGVIIGI 147
A L+ L ++EK P LA + ++FG+ TT SP FLGL N+ G WP ++G+ VIIGI
Sbjct: 81 AVLSREHLDQLEKMPGFLAIHADTFGRFHTTRSPTFLGLDKNAAGSWPEGKFGEDVIIGI 140
Query: 148 IDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINV 207
IDTGIWPESESF DKGM PVP RW G CE+G F+ CNRKLIGARSFSKGL+ G+ +
Sbjct: 141 IDTGIWPESESFKDKGMGPVPDRWRGACESGVEFNSSYCNRKLIGARSFSKGLKQQGLII 200
Query: 208 SKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATD 267
S D+DS RDFFGHGTHT+STAAG+ V ++FGYAKGTA GIAP+A +A YKVL+ D
Sbjct: 201 STSDDYDSPRDFFGHGTHTASTAAGSPVRDANYFGYAKGTAIGIAPKARLAAYKVLFTND 260
Query: 268 TEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGN 327
T+ SAASD LAGMDQAIADGVD+MSLSLGF++T + + IA+ + +A+E GI V C+AGN
Sbjct: 261 TDISAASDTLAGMDQAIADGVDLMSLSLGFEETTFEQNPIAVGAFAAMEKGIFVSCSAGN 320
Query: 328 DGFPR--SIHNGAPWITTVGAGTLDRSFHATVTLDNG-LTFKGISYFPESVYITDAPLYY 384
G P ++ NGAPWITT+GAGT+DR + A VT G LT +G S +PE+V +++ LY+
Sbjct: 321 SG-PEGYTMLNGAPWITTIGAGTIDRDYAADVTFGGGILTIRGRSVYPENVLVSNVSLYF 379
Query: 385 GKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP-DI 443
G + +K +C +L+P +V GK+VFC N+ SQ+ EVDRAGA AI +D+
Sbjct: 380 GHGNRSKELCEDFALDPKDVAGKIVFC-YFNQSGGVSQVREVDRAGAKGAIISSDSEFFN 438
Query: 444 DSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDP 503
++IP +++ G ++ Y+ K+++ V ++F++T LG+KPAP VA FSSRGP+
Sbjct: 439 FPSFFFIPLVVVTPKDGDLVKDYII-KSENPVVDVKFLITVLGSKPAPQVAFFSSRGPNN 497
Query: 504 ISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLK 563
+P ILKPD++APGV++LAA AP + +G+ L+TDY L SGTSM++PH GVAALLK
Sbjct: 498 RAPMILKPDVLAPGVNILAAWAPKVALTRVGDNRLLTDYTLLSGTSMSSPHAVGVAALLK 557
Query: 564 AIHRDWSPAAIRSAIMTTAYPVNFAENEIGV-------VPATPLDFGAGHIDPNKAMDPG 616
+ H DWS AAIRSA+MTTAY +N IG V ATPLDFGAGHI+PN AMDPG
Sbjct: 558 SAHPDWSSAAIRSALMTTAY---LLDNTIGSIIDMDTGVAATPLDFGAGHINPNMAMDPG 614
Query: 617 LIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQESTDLNYPSFAAVFTNETTAKN- 675
LIYD + QDY+ FLCGL Y KQ+K + RR+++ C Q + DLNYPSF + N T +
Sbjct: 615 LIYDIEVQDYINFLCGLNYTSKQIKIISRRSKFTCDQANLDLNYPSFIVLLNNNTNTTSY 674
Query: 676 -FSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRV- 733
F RV+ NV S+YRA ++ P+GM + ++PS + F KY +F ++VEI+ R
Sbjct: 675 TFKRVLTNVVDSPSVYRASVKQPSGMKVNVQPSMVFFAGKYSKAEFNMTVEINLGYARPQ 734
Query: 734 -----SYGYLKWID-QYNHTVSSPVVA 754
++GYL W + H V SP+V+
Sbjct: 735 SEYIGNFGYLTWWEVNGTHVVKSPIVS 761
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 757 | ||||||
| UNIPROTKB|Q0JD53 | 777 | Os04g0430700 "Os04g0430700 pro | 0.841 | 0.819 | 0.506 | 3.4e-171 | |
| UNIPROTKB|Q75I27 | 765 | OSJNBa0091E13.30 "Putaive subt | 0.833 | 0.824 | 0.420 | 6.2e-157 | |
| UNIPROTKB|Q6I5K9 | 761 | OSJNBb0088F07.10 "Putative sub | 0.923 | 0.918 | 0.430 | 1.6e-150 | |
| UNIPROTKB|Q94H95 | 764 | OSJNBb0048A17.11 "cDNA clone:J | 0.936 | 0.928 | 0.426 | 2.1e-148 | |
| TAIR|locus:2158187 | 757 | ARA12 [Arabidopsis thaliana (t | 0.943 | 0.943 | 0.420 | 2.4e-147 | |
| UNIPROTKB|Q8S1N3 | 760 | P0677H08.26 "Os01g0868900 prot | 0.928 | 0.925 | 0.440 | 2.2e-144 | |
| TAIR|locus:2087512 | 777 | AT3G14067 "AT3G14067" [Arabido | 0.908 | 0.885 | 0.409 | 1.3e-141 | |
| TAIR|locus:2064696 | 754 | AT2G05920 "AT2G05920" [Arabido | 0.919 | 0.923 | 0.414 | 5.5e-141 | |
| TAIR|locus:2165366 | 780 | SBT1.3 "AT5G51750" [Arabidopsi | 0.937 | 0.910 | 0.399 | 5.1e-138 | |
| UNIPROTKB|Q7XTY8 | 776 | OSJNBa0019K04.9 "Os04g0573300 | 0.933 | 0.911 | 0.390 | 1.2e-134 |
| UNIPROTKB|Q0JD53 Os04g0430700 "Os04g0430700 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1664 (590.8 bits), Expect = 3.4e-171, P = 3.4e-171
Identities = 340/671 (50%), Positives = 452/671 (67%)
Query: 29 AESRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASY------PADRNNMLLYSYNH 82
A + +D + Y++ MD S P+ F TH+ W+ S+L SAS PA + LY+Y+H
Sbjct: 20 AAAAGDDRRPYVVRMDVSAMPAPFATHDGWYRSVLSSASARDAAAAPAAEH---LYTYSH 76
Query: 83 VIQGFSARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQG 142
+ GFSA LT Q+ EI ++ H+A +PE++ +L TT +P FLGL +G WP++RYG
Sbjct: 77 AMNGFSAVLTARQVEEIRRADGHVAVFPETYARLHTTRTPAFLGLSAGAGAWPASRYGAD 136
Query: 143 VIIGIIDTGIWPESESFHDKGMP-PVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQ 201
V++GI+DTG+WPES SF D G+ PVP RW G CE G +F P +CNRKL+GARSFSKGL+
Sbjct: 137 VVVGIVDTGVWPESASFSDAGVAAPVPARWKGACEAGASFRPSMCNRKLVGARSFSKGLR 196
Query: 202 AAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYK 261
G+N+S + D+DS RD++GHG+HTSSTAAG V G S+FGYA GTA G+AP A VAMYK
Sbjct: 197 QRGLNISDD-DYDSPRDYYGHGSHTSSTAAGAAVPGASYFGYANGTATGVAPMARVAMYK 255
Query: 262 VLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVV 321
+++ DT ESA++DVLA MDQAIADGVD+MSLSLGF ++PY +V+AI + +A+ GI+V
Sbjct: 256 AVFSADTLESASTDVLAAMDQAIADGVDVMSLSLGFPESPYDTNVVAIGAFAAVRRGILV 315
Query: 322 VCAAGNDGFPR-SIHNGAPWITTVGAGTLDRSFHATVTLDNGL----TFKGISYFPESVY 376
C+AGNDG ++ NGAPWITTVGA T+DR+F ATVTL G + G S +P V
Sbjct: 316 TCSAGNDGSDSYTVLNGAPWITTVGASTIDRAFTATVTLGAGAGGARSIVGRSVYPGRVP 375
Query: 377 ITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIF 436
A LYYG+ + K C GSL+ +V GK VFC N+ + QM EV G I
Sbjct: 376 AGAAALYYGRGNRTKERCESGSLSRKDVRGKYVFC-NAGEGGIHEQMYEVQSNGGRGVIA 434
Query: 437 LTDTPDI-DSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVAS 495
++ +I D +Y P +++ S G +I++Y T + S+RF TELG KPAP VA
Sbjct: 435 ASNMKEIMDPSDYVTPVVLVTPSDGAAIQRYATAAAAPRA-SVRFAGTELGVKPAPAVAY 493
Query: 496 FSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEI--GNYELVTDYALFSGTSMAAP 553
FSSRGP P+SP ILKPD+VAPGVD+LAA PN +E+ G +L T+Y L SGTSMA+P
Sbjct: 494 FSSRGPSPVSPAILKPDVVAPGVDILAAWVPNKEVMELDGGETKLYTNYMLVSGTSMASP 553
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAEN-EI----GVVPATPLDFGAGHID 608
HVAGVAALL++ H DWSPAA+RSA+MTTAY + A++ ++ G P TPLD+G+GH+
Sbjct: 554 HVAGVAALLRSAHPDWSPAAVRSAMMTTAYVKDNADDADLVSMPGGSPGTPLDYGSGHVS 613
Query: 609 PNKAMDPGLIYDADFQDYVEFLCG-LGYDEKQMKAVIRRNQWNC-----SQESTDLNYPS 662
PN+A DPGL+YD DYV FLCG L Y +Q+ A I ++ C + DLNYPS
Sbjct: 614 PNQATDPGLVYDITADDYVAFLCGELRYTSRQV-AAIAGHRAGCPAGAGAASHRDLNYPS 672
Query: 663 FAAVFTNETTA 673
F + N+T +
Sbjct: 673 FMVIL-NKTNS 682
|
|
| UNIPROTKB|Q75I27 OSJNBa0091E13.30 "Putaive subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1291 (459.5 bits), Expect = 6.2e-157, Sum P(2) = 6.2e-157
Identities = 277/658 (42%), Positives = 395/658 (60%)
Query: 34 EDHQTYIIHMDHSHKPSAFLT-HESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLT 92
E+ TYI+HM S P+ + H W+ + L+S S A + +LY+Y+ V+ GFSARLT
Sbjct: 21 EERATYIVHMAKSAMPAEYGDDHGEWYGASLRSVS-GAGK---MLYAYDTVLHGFSARLT 76
Query: 93 PSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGI 152
+ ++ LA PE+ +L TT +P FLG+ N GL+P + V++G++DTG+
Sbjct: 77 AREARDMAAMDGVLAVNPEARYELHTTRTPEFLGIAGNDGLFPQSGTAGDVVVGVLDTGV 136
Query: 153 WPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212
WPES S+ D G+ VP W G C GT F+ CNRKL+GAR F++G +AA + +
Sbjct: 137 WPESRSYDDAGLGEVPSWWKGECMAGTGFNSSACNRKLVGARFFNRGYEAAMGPMDTTRE 196
Query: 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESA 272
S RD GHGTHTSSTAAG V G S G+A GTARG+APRA VA+YKV W
Sbjct: 197 SRSPRDDDGHGTHTSSTAAGAAVSGASLLGFASGTARGMAPRARVAVYKVCWLGGC---F 253
Query: 273 ASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPR 332
+SD+LAGMD A+ADG ++SLSLG Y D +AI + +A+E ++V C+AGN G
Sbjct: 254 SSDILAGMDAAVADGCGVLSLSLGGGAADYARDSVAIGAFAAMEQNVLVSCSAGNAGPGT 313
Query: 333 S-IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS-YFPESVYITDAPLYYGKNDVN 390
S + N APWITTVGAGTLDR F A V+L NG + G+S Y +++ T P+ Y N N
Sbjct: 314 STLSNVAPWITTVGAGTLDRDFPAYVSLGNGKNYTGVSLYAGKALPSTPLPIVYAANASN 373
Query: 391 KS---ICHLGSLNPDEVTGKVVFCDN--SNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445
+ +C G+L P++V GK+V CD S R+ + + AG + T+ ++ +
Sbjct: 374 STAGNLCMPGTLTPEKVAGKIVVCDRGVSARVQKGFVVRDAGGAGMVLSNTATNGEELVA 433
Query: 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPIS 505
D + +P+ + G +I+ YV + S ++ T++ +P+P VA+FSSRGP+ ++
Sbjct: 434 DAHLLPAAGVGAKEGAAIKAYVAS-DPSPTATIVVAGTQVDVRPSPVVAAFSSRGPNMLT 492
Query: 506 PGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAI 565
P ILKPDI+APGV++LAA I + + SGTSM+ PHV+G+AALL++
Sbjct: 493 PEILKPDIIAPGVNILAAWTGKAGPTGIAADTRRVAFNIISGTSMSCPHVSGLAALLRSA 552
Query: 566 HRDWSPAAIRSAIMTTAYPVNFAENEIGVV-------PATPLDFGAGHIDPNKAMDPGLI 618
H +WSPAA+RSA+MTTAY + + PATP D+GAGH+DP A+DPGL+
Sbjct: 553 HPEWSPAAVRSALMTTAYSTYAGAGDANPLLDAATGAPATPFDYGAGHVDPASAVDPGLV 612
Query: 619 YDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQEST----DLNYPSFAAVFTNETT 672
YD DYV+FLC L Y + AV R + C++ +LNYPSFA ++ ++
Sbjct: 613 YDLGTADYVDFLCALNYTSTMIAAVARSKSYGCTEGKAYSVYNLNYPSFAVAYSTASS 670
|
|
| UNIPROTKB|Q6I5K9 OSJNBb0088F07.10 "Putative subtilisin-like proteinase" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1469 (522.2 bits), Expect = 1.6e-150, P = 1.6e-150
Identities = 319/741 (43%), Positives = 460/741 (62%)
Query: 35 DHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPS 94
D YI+HMD S P AF + SW+ S L +A+ AD + Y Y++ + GF+AR+T
Sbjct: 34 DTAAYIVHMDKSAMPRAFASQASWYESTLAAAAPGAD----MFYVYDNAMHGFAARVTAD 89
Query: 95 QLSEIEKSPAHLATYPESFGKLF--TTHSPNFLGLKPNSG-LWPSARYGQGVIIGIIDTG 151
+L ++ S ++ YP+ + TTH+P FLG+ +SG LW ++ YG+ VI+G++DTG
Sbjct: 90 ELEKLRGSRGFVSCYPDDARAVRRDTTHTPEFLGVSASSGGLWEASEYGEDVIVGVVDTG 149
Query: 152 IWPESESFHDKGMPPVPRRWNGRCENGTAFSPF-VCNRKLIGARSFSKGLQAAGINVSKE 210
+WPES SF D G+PPVP RW G CE+GTAF VCNRKL+GAR F+KGL AA N++
Sbjct: 150 VWPESASFRDDGLPPVPARWKGYCESGTAFDAGKVCNRKLVGARKFNKGLVAA-TNLT-- 206
Query: 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE 270
+S RD GHGTHTSSTAAG+ V G S FGYA GTARG+APRA VAMYK LW E
Sbjct: 207 IAVNSPRDTDGHGTHTSSTAAGSPVAGASFFGYAPGTARGMAPRARVAMYKALW---DEG 263
Query: 271 SAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG- 329
+ SD+LA +DQAIADGVD++SLSLG + P++ D IAI + +A++ G+ V +AGNDG
Sbjct: 264 TYPSDILAAIDQAIADGVDVLSLSLGLNDVPFYRDPIAIGAFAAMQRGVFVSTSAGNDGP 323
Query: 330 FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFP--ESVYITDAPLYYGKN 387
P +HNG PW TV +GT DR F V L +G T G S +P S + ++ G
Sbjct: 324 DPGFLHNGTPWTLTVASGTGDREFAGIVRLGDGTTVIGQSMYPGSPSTIASSGFVFLGAC 383
Query: 388 DVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDE 447
D + ++ N D KVV CD ++ + + + V A A A +FL++ + E
Sbjct: 384 DNDTALAR----NRD----KVVLCDATDSLS--AAIFAVQVAKARAGLFLSNDSFRELSE 433
Query: 448 YY-IPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISP 506
++ P +IL ++ QY+ ++++ S++F +T LGTKPAP VA++SSRGP P
Sbjct: 434 HFTFPGVILSPQDAPALLQYIK-RSRAPRASIKFGVTILGTKPAPVVATYSSRGPSASCP 492
Query: 507 GILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH 566
+LKPD++APG +LA+ N+ +G+ +L + + + SGTSM+ PH +GVAAL+KA+H
Sbjct: 493 TVLKPDVLAPGSLILASWPENVSVSTVGSQQLYSRFNVISGTSMSCPHASGVAALIKAVH 552
Query: 567 RDWSPAAIRSAIMTTAYPV---NFAENEIGVVP--ATPLDFGAGHIDPNKAMDPGLIYDA 621
+WSPAA+RSA+MTTA V N ++G ATPL G+GHIDPN+A+DPGL+YDA
Sbjct: 553 PEWSPAAVRSAMMTTASAVDNTNAPIKDMGRANRGATPLAMGSGHIDPNRAVDPGLVYDA 612
Query: 622 DFQDYVEFLCGLGYDEKQMKAVIRR--NQWNCSQESTDLNYPSFAAVFTNETTA---KNF 676
DYV+ +C + Y Q+K V + + +C+ + DLNYPSF A F TA + F
Sbjct: 613 GADDYVKLMCAMNYTAAQIKTVAQSPSSAVDCAGATLDLNYPSFIAFFDPGATAPAARTF 672
Query: 677 SRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSV--EIDRESPRVS 734
+R V NVG + Y A ++ G+ + + P L F +K++ + + + ++ ++ V
Sbjct: 673 TRAVTNVGDAPASYSAKVKGLGGLTVSVSPERLVFGRKHETQKYTVVIRGQMKNKTDEVL 732
Query: 735 YGYLKWIDQYN-HTVSSPVVA 754
+G L W+D +TV SP+VA
Sbjct: 733 HGSLTWVDDAGKYTVRSPIVA 753
|
|
| UNIPROTKB|Q94H95 OSJNBb0048A17.11 "cDNA clone:J033123P12, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1449 (515.1 bits), Expect = 2.1e-148, P = 2.1e-148
Identities = 318/746 (42%), Positives = 440/746 (58%)
Query: 35 DHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPS 94
+ +TYI+HM S KP+ F+ H W+ + L+S S A +LY+Y+ ++ G+SARLT +
Sbjct: 33 ERRTYIVHMSRSAKPNDFVEHGEWYAASLQSVSDAAT----VLYTYDTIVHGYSARLTRA 88
Query: 95 QLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWP 154
+ +E P L PE +L TT +P FLGL L+P + G VI+G++DTG+WP
Sbjct: 89 EAEALESQPGVLLVNPEVRYELHTTRTPEFLGLDRTDALFPQSNTGSDVIVGVLDTGVWP 148
Query: 155 ESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFD 214
E S+ D G+ PVP W G+CE G F+ CN+KLIGAR F G +AA V +
Sbjct: 149 ERPSYDDAGLGPVPAGWKGKCEEGNDFNASACNKKLIGARFFLTGYEAAKGPVDTSKESR 208
Query: 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAAS 274
S RD GHGTHTSSTAAG+ V G GYA GTA+G+AP A VA YKV W +S
Sbjct: 209 SPRDNDGHGTHTSSTAAGSAVRGADLLGYAAGTAKGMAPHARVATYKVCWVGGC---FSS 265
Query: 275 DVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRS- 333
D+L M+ A+ DGVD++SLSLG Y+ D IA+ + SA+E GI V C+AGN G P S
Sbjct: 266 DILKAMEVAVNDGVDVLSLSLGGGTADYYRDSIAVGAYSAMERGIFVSCSAGNAG-PGSA 324
Query: 334 -IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS-YFPESVYITDAPLYYGKNDVNK 391
+ NGAPWITTVGAGTLDR F A V L NG + G+S Y + + T P Y N N
Sbjct: 325 TLSNGAPWITTVGAGTLDRDFPAHVVLGNGKNYSGVSLYSGKQLPTTPVPFIYAGNASNS 384
Query: 392 S---ICHLGSLNPDEVTGKVVFCDNSN--RIDTYSQMEEVDRAGAYAAIFLTDTPDIDSD 446
S +C GSL P++V GK+V CD R+ +++ AG A + ++ +D
Sbjct: 385 SMGALCMSGSLIPEKVAGKIVLCDRGTNARVQKGFVVKDAGGAGMVLANTAANGEELVAD 444
Query: 447 EYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISP 506
+ +P + AG ++R Y + + S+ F T++G +P+P VA+FSSRGP+ ++P
Sbjct: 445 AHVLPGAGVGQKAGDTMRAYALS-DPNPTASIVFAGTQVGIQPSPVVAAFSSRGPNTVTP 503
Query: 507 GILKPDIVAPGVDVLAAVAPNI-PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAI 565
GILKPD++APGV++LAA + ++ P G+ V + + SGTSM+ PHV+G+AALL+A
Sbjct: 504 GILKPDLIAPGVNILAAWSGSVGPSGLAGDSRRV-GFNIISGTSMSCPHVSGLAALLRAA 562
Query: 566 HRDWSPAAIRSAIMTTAYPVNFAENEIGVV------PATPLDFGAGHIDPNKAMDPGLIY 619
H+DWSPAAIRSA+MTT+Y N N G++ PATPLD GAGH+DP+KA+DPGL+Y
Sbjct: 563 HQDWSPAAIRSALMTTSY--NGYPNGNGILDVATGLPATPLDVGAGHVDPSKAVDPGLVY 620
Query: 620 DADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQEST----DLNYPSFAAVFTNETTAKN 675
D DYV+FLC + Y Q+ A+ + CS T LNYPSF+ F +
Sbjct: 621 DIAAADYVDFLCAISYGPMQIAALTKHTTDACSGNRTYAVTALNYPSFSVTFPATGGTEK 680
Query: 676 FSRVVKNVGAEDSIYRAVLEFPAG---MNIRIEPSTLKFTQKYQLLDFALS-VEIDRESP 731
+R V NVG + Y+ AG + + +EPSTL FT+ + + +S S
Sbjct: 681 HTRTVTNVG-QPGTYKVTASAAAGSTPVTVSVEPSTLTFTKSGEKQSYTVSFAAAAMPSG 739
Query: 732 RVSYGYLKWIDQYNHTVSSPVVAIKT 757
+G L W + H VSSP+ T
Sbjct: 740 TNGFGRLVWSSDH-HVVSSPIAVTWT 764
|
|
| TAIR|locus:2158187 ARA12 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1439 (511.6 bits), Expect = 2.4e-147, P = 2.4e-147
Identities = 315/749 (42%), Positives = 449/749 (59%)
Query: 25 GSDNAESRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVI 84
G + S + D TYI+HM S PS+F H +W+ S L+S S A+ LLY+Y + I
Sbjct: 18 GFCHVSSSSSDQGTYIVHMAKSQMPSSFDLHSNWYDSSLRSISDSAE----LLYTYENAI 73
Query: 85 QGFSARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSG-LWPSARYGQGV 143
GFS RLT + + P ++ PE +L TT +P FLGL ++ L+P A V
Sbjct: 74 HGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLDEHTADLFPEAGSYSDV 133
Query: 144 IIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAA 203
++G++DTG+WPES+S+ D+G P+P W G CE GT F+ +CNRKLIGAR F++G ++
Sbjct: 134 VVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCNRKLIGARFFARGYEST 193
Query: 204 GINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVL 263
+ + + S RD GHGTHTSSTAAG+ VEG S GYA GTARG+APRA VA+YKV
Sbjct: 194 MGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGTARGMAPRARVAVYKVC 253
Query: 264 WATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVC 323
W +SD+LA +D+AIAD V+++S+SLG + Y+ D +AI + +A+E GI+V C
Sbjct: 254 WLGGC---FSSDILAAIDKAIADNVNVLSMSLGGGMSDYYRDGVAIGAFAAMERGILVSC 310
Query: 324 AAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFP-ESVYITDAP 381
+AGN G S+ N APWITTVGAGTLDR F A L NG F G+S F E++ P
Sbjct: 311 SAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGVSLFKGEALPDKLLP 370
Query: 382 LYYG---KNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLT 438
Y N N ++C G+L P++V GK+V CD I+ Q +V +A + L
Sbjct: 371 FIYAGNASNATNGNLCMTGTLIPEKVKGKIVMCDRG--INARVQKGDVVKAAGGVGMILA 428
Query: 439 DTP----DIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVA 494
+T ++ +D + +P+ + AG IR YVT + + S+ + T +G KP+P VA
Sbjct: 429 NTAANGEELVADAHLLPATTVGEKAGDIIRHYVT-TDPNPTASISILGTVVGVKPSPVVA 487
Query: 495 SFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPH 554
+FSSRGP+ I+P ILKPD++APGV++LAA + + ++ + SGTSM+ PH
Sbjct: 488 AFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDSRRVEFNIISGTSMSCPH 547
Query: 555 VAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENE--IGVV---PATPLDFGAGHIDP 609
V+G+AALLK++H +WSPAAIRSA+MTTAY + + + + + P+TP D GAGH+ P
Sbjct: 548 VSGLAALLKSVHPEWSPAAIRSALMTTAYKT-YKDGKPLLDIATGKPSTPFDHGAGHVSP 606
Query: 610 NKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNC----SQESTDLNYPSFAA 665
A +PGLIYD +DY+ FLC L Y Q+++V RRN + C S DLNYPSFA
Sbjct: 607 TTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRN-YTCDPSKSYSVADLNYPSFA- 664
Query: 666 VFTNETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVE 725
V + A ++R V +VG + V G+ I +EP+ L F + + + ++
Sbjct: 665 VNVDGVGAYKYTRTVTSVGGAGTYSVKVTSETTGVKISVEPAVLNFKEANEKKSYTVTFT 724
Query: 726 IDRESPRVS--YGYLKWIDQYNHTVSSPV 752
+D P S +G ++W D H V SPV
Sbjct: 725 VDSSKPSGSNSFGSIEWSDG-KHVVGSPV 752
|
|
| UNIPROTKB|Q8S1N3 P0677H08.26 "Os01g0868900 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1411 (501.8 bits), Expect = 2.2e-144, P = 2.2e-144
Identities = 334/759 (44%), Positives = 459/759 (60%)
Query: 29 AESRNEDHQTYIIHMDHSHKPSA------FLTHESWHLSILKSASYPADRNNMLLYSYNH 82
A + + + TYI+HMD S PS + ESW+ + L++A+ P R ++Y Y +
Sbjct: 17 AAAASAETATYIVHMDKSAMPSGGGGGNGSTSLESWYAATLRAAA-PGAR---MIYVYRN 72
Query: 83 VIQGFSARLTPSQLSEIEKSPAHLATYPES-FGKLFTTHSPNFLGLKPNSGLWPSARYGQ 141
+ GF+ARL+ Q + + +SP L++Y ++ + TTH+P FLG+ GLW +A YG
Sbjct: 73 AMSGFAARLSAEQHARLSRSPGFLSSYLDAPVTRRDTTHTPEFLGVSGAGGLWETASYGD 132
Query: 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPF-VCNRKLIGARSFSKGL 200
GVI+G++DTG+WPES S+ D G+PPVP RW G CE+GT F CNRKLIGAR FS GL
Sbjct: 133 GVIVGVVDTGVWPESGSYRDDGLPPVPARWKGYCESGTRFDGAKACNRKLIGARKFSAGL 192
Query: 201 QAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMY 260
AA + +S RD GHGTHTSSTAAG+ V G S+FGYA G ARG+APRA VA+Y
Sbjct: 193 AAALGRRNITIAVNSPRDTDGHGTHTSSTAAGSPVPGASYFGYAPGVARGMAPRARVAVY 252
Query: 261 KVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIV 320
KVL+ D E +D++A +DQAIADGVD++S+SLG + P D +AI S +A+++GI
Sbjct: 253 KVLF--D-EGGYTTDIVAAIDQAIADGVDVLSISLGLNNRPLHTDPVAIGSFAAMQHGIF 309
Query: 321 VVCAAGNDGFPRSI-HNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITD 379
V +AGNDG S+ HNGAPW TV AGT+DR F V L +G T G S + S IT
Sbjct: 310 VSTSAGNDGPGLSVLHNGAPWALTVAAGTVDREFSGIVELGDGTTVIGESLYAGSPPITQ 369
Query: 380 A-PLYYGKNDVNKSICHLGSLNPDEVTGKVVFCD-NSNRIDTYSQMEEVDRAGAYAAIFL 437
+ PL Y + N + N D K+V CD ++ ++ V A A +FL
Sbjct: 370 STPLVYLDSCDNFTAIRR---NRD----KIVLCDAQASSFALQVAVQFVQDANAAGGLFL 422
Query: 438 TDTP-DIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASF 496
T+ P + +++ P +L G +I +Y+ K + F T L TKPAP A++
Sbjct: 423 TNDPFRLLFEQFTFPGALLSPHDGPAILRYIQRSGAPTAK-IAFRATLLNTKPAPEAAAY 481
Query: 497 SSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVA 556
SSRGP P +LKPDI+APG VLA+ A ++ + GN + + + + SGTSMA PH A
Sbjct: 482 SSRGPAVSCPTVLKPDIMAPGSLVLASWAESVAVV--GN--MTSPFNIISGTSMATPHAA 537
Query: 557 GVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVP-----ATPLDFGAGHIDPNK 611
GVAALL+A+H +WSPAAIRSA+MTTA ++ I + ATPL G+GHIDPN+
Sbjct: 538 GVAALLRAVHPEWSPAAIRSAMMTTAATLDNTGRSINDMARAGHAATPLAMGSGHIDPNR 597
Query: 612 AMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQW--NCSQEST-DLNYPSFAAVFT 668
A DPGL+YDA DYVE +C +GY+ ++AV + + + NCS S+ DLNYPSF A F
Sbjct: 598 AADPGLVYDAVPGDYVELMCAMGYNLSDIRAVTQWSTYAVNCSGASSPDLNYPSFIAYFD 657
Query: 669 NETTA------KNFSRVVKNVGAEDSIYRAVLEFP-AGMNIRIEPSTLKF-----TQKYQ 716
+ A K F RVV NVGA + YRA ++ G+ + + PS L F TQKY
Sbjct: 658 RRSAAAAAAETKTFVRVVTNVGAGAASYRAKVKGNLGGLAVSVTPSRLVFGKKGETQKYT 717
Query: 717 LLDFALSVEIDRESPRVSYGYLKWIDQYN-HTVSSPVVA 754
L+ L +I + + +V +G L W+D +TV SP+VA
Sbjct: 718 LV---LRGKI-KGADKVLHGSLTWVDDAGKYTVRSPIVA 752
|
|
| TAIR|locus:2087512 AT3G14067 "AT3G14067" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1385 (492.6 bits), Expect = 1.3e-141, P = 1.3e-141
Identities = 293/716 (40%), Positives = 430/716 (60%)
Query: 29 AESRNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSA-SYPADRNNMLLYSYNHVIQGF 87
+ S ++ ++YI+H+ SHKPS F +H +WH+S+L+S S P LLYSY+ + GF
Sbjct: 23 SSSSSDGLESYIVHVQRSHKPSLFSSHNNWHVSLLRSLPSSPQPAT--LLYSYSRAVHGF 80
Query: 88 SARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGI 147
SARL+P Q + + + P+ ++ P+ ++ TTH+P FLG NSGLW ++ YG+ VI+G+
Sbjct: 81 SARLSPIQTAALRRHPSVISVIPDQAREIHTTHTPAFLGFSQNSGLWSNSNYGEDVIVGV 140
Query: 148 IDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGL--QAAGI 205
+DTGIWPE SF D G+ P+P W G CE G F CNRKLIGAR+F +G Q G
Sbjct: 141 LDTGIWPEHPSFSDSGLGPIPSTWKGECEIGPDFPASSCNRKLIGARAFYRGYLTQRNGT 200
Query: 206 NVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWA 265
+ S RD GHGTHT+STAAG+ V S + YA+GTA G+A +A +A YK+ W
Sbjct: 201 KKHAAKESRSPRDTEGHGTHTASTAAGSVVANASLYQYARGTATGMASKARIAAYKICWT 260
Query: 266 TDTEESAASDVLAGMDQAIADGVDIMSLSLGFD-QTP-YFNDVIAIASLSAIENGIVVVC 323
+S D+LA MDQA+ADGV ++SLS+G P Y D IAI + A +GIVV C
Sbjct: 261 GGCYDS---DILAAMDQAVADGVHVISLSVGASGSAPEYHTDSIAIGAFGATRHGIVVSC 317
Query: 324 AAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS-YFPESVYITDAP 381
+AGN G P + N APWI TVGA T+DR F A +G F G S Y ES+ +
Sbjct: 318 SAGNSGPNPETATNIAPWILTVGASTVDREFAANAITGDGKVFTGTSLYAGESLPDSQLS 377
Query: 382 LYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSN--RIDTYSQMEEVDRAGAYAAIFLTD 439
L Y D +C+ G LN V GK+V CD R++ S ++ AG A
Sbjct: 378 LVYS-GDCGSRLCYPGKLNSSLVEGKIVLCDRGGNARVEKGSAVKLAGGAGMILANTAES 436
Query: 440 TPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELG-TKPAPHVASFSS 498
++ +D + +P+ ++ AG IR Y+ + K + F+ T +G + P+P VA+FSS
Sbjct: 437 GEELTADSHLVPATMVGAKAGDQIRDYIKTSDSPTAK-ISFLGTLIGPSPPSPRVAAFSS 495
Query: 499 RGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGV 558
RGP+ ++P ILKPD++APGV++LA + ++ + + SGTSM+ PHV+G+
Sbjct: 496 RGPNHLTPVILKPDVIAPGVNILAGWTGMVGPTDLDIDPRRVQFNIISGTSMSCPHVSGL 555
Query: 559 AALLKAIHRDWSPAAIRSAIMTTAYPV-NFAE--NEIGVVPAT-PLDFGAGHIDPNKAMD 614
AALL+ H DWSPAAI+SA++TTAY V N E ++ ++ GAGH+DPNKA++
Sbjct: 556 AALLRKAHPDWSPAAIKSALVTTAYDVENSGEPIEDLATGKSSNSFIHGAGHVDPNKALN 615
Query: 615 PGLIYDADFQDYVEFLCGLGYDEKQMKAVIRR-NQWNCSQEST-----DLNYPSFAAVFT 668
PGL+YD + ++YV FLC +GY+ + ++ ++ + S DLNYPSF+ VF
Sbjct: 616 PGLVYDIEVKEYVAFLCAVGYEFPGILVFLQDPTLYDACETSKLRTAGDLNYPSFSVVFA 675
Query: 669 NETTAKNFSRVVKNVGAE-DSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALS 723
+ + RVVKNVG+ D++Y ++ PA + I + PS L F+++ +L++ ++
Sbjct: 676 STGEVVKYKRVVKNVGSNVDAVYEVGVKSPANVEIDVSPSKLAFSKEKSVLEYEVT 731
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| TAIR|locus:2064696 AT2G05920 "AT2G05920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1379 (490.5 bits), Expect = 5.5e-141, P = 5.5e-141
Identities = 307/740 (41%), Positives = 434/740 (58%)
Query: 37 QTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQL 96
+TYII ++HS KP +FLTH W+ S L S S LLY+Y GFSA L ++
Sbjct: 28 KTYIIRVNHSDKPESFLTHHDWYTSQLNSES-------SLLYTYTTSFHGFSAYLDSTEA 80
Query: 97 -SEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPE 155
S + S + L + + L TT +P FLGL G+ GVIIG++DTG+WPE
Sbjct: 81 DSLLSSSNSILDIFEDPLYTLHTTRTPEFLGLNSEFGVHDLGSSSNGVIIGVLDTGVWPE 140
Query: 156 SESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQ-AAGINVSKEYDFD 214
S SF D MP +P +W G CE+G+ F +CN+KLIGARSFSKG Q A+G S + +
Sbjct: 141 SRSFDDTDMPEIPSKWKGECESGSDFDSKLCNKKLIGARSFSKGFQMASGGGFSSKRESV 200
Query: 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAAS 274
S RD GHGTHTS+TAAG+ V S GYA GTARG+A RA VA YKV W+T S
Sbjct: 201 SPRDVDGHGTHTSTTAAGSAVRNASFLGYAAGTARGMATRARVATYKVCWSTGC---FGS 257
Query: 275 DVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPR-S 333
D+LA MD+AI DGVD++SLSLG PY+ D IAI + SA+E G+ V C+AGN G R S
Sbjct: 258 DILAAMDRAILDGVDVLSLSLGGGSAPYYRDTIAIGAFSAMERGVFVSCSAGNSGPTRAS 317
Query: 334 IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPL--YYGK-NDVN 390
+ N APW+ TVGAGTLDR F A L NG G+S + V + PL Y K N +
Sbjct: 318 VANVAPWVMTVGAGTLDRDFPAFANLGNGKRLTGVSLY-SGVGMGTKPLELVYNKGNSSS 376
Query: 391 KSICHLGSLNPDEVTGKVVFCDNS-N-RIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448
++C GSL+ V GK+V CD N R++ + + + G A ++ +D +
Sbjct: 377 SNLCLPGSLDSSIVRGKIVVCDRGVNARVEKGAVVRDAGGLGMIMANTAASGEELVADSH 436
Query: 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMR-FILTELGTKPAPHVASFSSRGPDPISPG 507
+P++ + G +R+YV K+ SK ++ F T L KP+P VA+FSSRGP+ ++P
Sbjct: 437 LLPAIAVGKKTGDLLREYV--KSDSKPTALLVFKGTVLDVKPSPVVAAFSSRGPNTVTPE 494
Query: 508 ILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR 567
ILKPD++ PGV++LA + I + T + + SGTSM+ PH++G+A LLKA H
Sbjct: 495 ILKPDVIGPGVNILAGWSDAIGPTGLDKDSRRTQFNIMSGTSMSCPHISGLAGLLKAAHP 554
Query: 568 DWSPAAIRSAIMTTAY-------PVN-FAENEIGVVPATPLDFGAGHIDPNKAMDPGLIY 619
+WSP+AI+SA+MTTAY P++ A+N + + P G+GH+DP KA+ PGL+Y
Sbjct: 555 EWSPSAIKSALMTTAYVLDNTNAPLHDAADNSL----SNPYAHGSGHVDPQKALSPGLVY 610
Query: 620 DADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQESTD---LNYPSFAAVFTNETTAKNF 676
D ++Y+ FLC L Y + A+++R NCS++ +D LNYPSF+ +F + + +
Sbjct: 611 DISTEEYIRFLCSLDYTVDHIVAIVKRPSVNCSKKFSDPGQLNYPSFSVLFGGKRVVR-Y 669
Query: 677 SRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFT----QKYQLLDFALSVEIDRESPR 732
+R V NVGA S+Y+ + + I ++PS L F +K + F + + +
Sbjct: 670 TREVTNVGAASSVYKVTVNGAPSVGISVKPSKLSFKSVGEKKRYTVTFVSKKGVSMTN-K 728
Query: 733 VSYGYLKWIDQYNHTVSSPV 752
+G + W + H V SPV
Sbjct: 729 AEFGSITWSNP-QHEVRSPV 747
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| TAIR|locus:2165366 SBT1.3 "AT5G51750" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1351 (480.6 bits), Expect = 5.1e-138, P = 5.1e-138
Identities = 298/746 (39%), Positives = 431/746 (57%)
Query: 37 QTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADR-----NNMLLYSYNHVIQGFSARL 91
+TY+IHMD S P + H W+ S + S + + NN +LY+Y G +A+L
Sbjct: 35 KTYVIHMDKSAMPLPYTNHLQWYSSKINSVTQHKSQEEEGNNNRILYTYQTAFHGLAAQL 94
Query: 92 TPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNSG--LWPSARYGQGVIIGIID 149
T + +E+ +A PE+ +L TT SP FLGL+ +W V++G++D
Sbjct: 95 TQEEAERLEEEDGVVAVIPETRYELHTTRSPTFLGLERQESERVWAERVTDHDVVVGVLD 154
Query: 150 TGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSK 209
TGIWPESESF+D GM PVP W G CE G F CNRK++GAR F +G +AA + +
Sbjct: 155 TGIWPESESFNDTGMSPVPATWRGACETGKRFLKRNCNRKIVGARVFYRGYEAATGKIDE 214
Query: 210 EYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE 269
E ++ S RD GHGTHT++T AG+ V+G + FG+A GTARG+A +A VA YKV W
Sbjct: 215 ELEYKSPRDRDGHGTHTAATVAGSPVKGANLFGFAYGTARGMAQKARVAAYKVCWVGGC- 273
Query: 270 ESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
+SD+L+ +DQA+ADGV ++S+SLG + Y D ++IA+ A+E G+ V C+AGN G
Sbjct: 274 --FSSDILSAVDQAVADGVQVLSISLGGGVSTYSRDSLSIATFGAMEMGVFVSCSAGNGG 331
Query: 330 -FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYIT---DAPLYY- 384
P S+ N +PWITTVGA T+DR F ATV + TFKG+S + + PL Y
Sbjct: 332 PDPISLTNVSPWITTVGASTMDRDFPATVKIGTMRTFKGVSLYKGRTVLPKNKQYPLVYL 391
Query: 385 GKNDVNK---SICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP 441
G+N + S C G+L+ V GK+V CD + + V RAG + LT+T
Sbjct: 392 GRNASSPDPTSFCLDGALDRRHVAGKIVICDRGVT-PRVQKGQVVKRAGGIGMV-LTNTA 449
Query: 442 ----DIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFS 497
++ +D + +P++ + G I+QY K+ S+ + T +G KP+P VA+FS
Sbjct: 450 TNGEELVADSHMLPAVAVGEKEGKLIKQYAMTSKKATA-SLEILGTRIGIKPSPVVAAFS 508
Query: 498 SRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAG 557
SRGP+ +S ILKPD++APGV++LAA ++ + + + + SGTSM+ PHV+G
Sbjct: 509 SRGPNFLSLEILKPDLLAPGVNILAAWTGDMAPSSLSSDPRRVKFNILSGTSMSCPHVSG 568
Query: 558 VAALLKAIHRDWSPAAIRSAIMTTAYPVN--FAE--NEIGVVPATPLDFGAGHIDPNKAM 613
VAAL+K+ H DWSPAAI+SA+MTTAY + F + G P++P D GAGHIDP +A
Sbjct: 569 VAALIKSRHPDWSPAAIKSALMTTAYVHDNMFKPLTDASGAAPSSPYDHGAGHIDPLRAT 628
Query: 614 DPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNC----SQESTDLNYPSFAAVFTN 669
DPGL+YD Q+Y EFLC Q+K + + C ++ +LNYP+ +A+F
Sbjct: 629 DPGLVYDIGPQEYFEFLCTQDLSPSQLKVFTKHSNRTCKHTLAKNPGNLNYPAISALFPE 688
Query: 670 ETTAKNFS--RVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEID 727
T K + R V NVG S Y+ + G ++ ++P TL FT K+Q L + ++
Sbjct: 689 NTHVKAMTLRRTVTNVGPHISSYKVSVSPFKGASVTVQPKTLNFTSKHQKLSYTVTFRTR 748
Query: 728 RESPRVSYGYLKWIDQYNHTVSSPVV 753
R +G L W H V SPV+
Sbjct: 749 FRMKRPEFGGLVW-KSTTHKVRSPVI 773
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| UNIPROTKB|Q7XTY8 OSJNBa0019K04.9 "Os04g0573300 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1319 (469.4 bits), Expect = 1.2e-134, P = 1.2e-134
Identities = 292/748 (39%), Positives = 434/748 (58%)
Query: 37 QTYIIHMDHSHKPSAFLTHESWHLSILKSASYPA------DRNNMLLYSYNHVIQGFSAR 90
+TYI+ M S PS+F + W+ S +KS S D + ++Y+Y GF+A+
Sbjct: 32 KTYIVQMAASEMPSSFDFYHEWYASTVKSVSSSQLEDEEDDASTRIIYNYETAFHGFAAQ 91
Query: 91 LTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKP--NSGLWPSARYGQGVIIGII 148
L + + ++ LA PE+ +L TT SP+FLG+ P ++ +W + V++G++
Sbjct: 92 LDEEEAELMAEADGVLAVIPETVLQLHTTRSPDFLGIGPEVSNRIWSDSLADHDVVVGVL 151
Query: 149 DTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVS 208
DTGIWPES SF DKG+ PVP +W G C+ G F+ CNRK++GAR F G +A+ ++
Sbjct: 152 DTGIWPESPSFSDKGLGPVPAKWKGLCQTGRGFTTANCNRKIVGARIFYNGYEASSGPIN 211
Query: 209 KEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDT 268
+ + S RD GHGTHT++TAAG+ V+ + +GYA G ARG+APRA VA YKV WA
Sbjct: 212 ETTELKSPRDQDGHGTHTAATAAGSPVQDANLYGYAGGVARGMAPRARVAAYKVCWAGGC 271
Query: 269 EESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGND 328
+SD+LA +D+A++DGVD++S+SLG + Y+ D ++IAS A++ G+ V C+AGN
Sbjct: 272 ---FSSDILAAVDRAVSDGVDVLSISLGGGASRYYLDSLSIASFGAMQMGVFVACSAGNA 328
Query: 329 G-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYF-------PESVYITDA 380
G P S+ N +PWITTVGA T+DR F ATVTL NG G+S + P+ Y
Sbjct: 329 GPDPISLTNLSPWITTVGASTMDRDFPATVTLGNGANITGVSLYKGLRNLSPQEQYPV-- 386
Query: 381 PLYYGKNDVN---KSICHLGSLNPDEVTGKVVFCDN--SNRIDTYSQMEEVDRAGAYAAI 435
+Y G N +S+C G+L P +V+GK+V CD S R+ ++E G A
Sbjct: 387 -VYLGGNSSMPDPRSLCLEGTLQPHDVSGKIVICDRGISPRVQKGQVVKEAGGIGMILAN 445
Query: 436 FLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVAS 495
+ ++ +D + +P++ + + G + + Y K ++ F T+LG +P+P VA+
Sbjct: 446 TAANGEELVADSHLLPAVAVGEAEGIAAKSYSKSAPKPTA-TLSFGGTKLGIRPSPVVAA 504
Query: 496 FSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHV 555
FSSRGP+ ++ ILKPD+VAPGV++LAA + + + + + + SGTSM+ PHV
Sbjct: 505 FSSRGPNILTLEILKPDVVAPGVNILAAWSGDASPSSLSSDSRRVGFNILSGTSMSCPHV 564
Query: 556 AGVAALLKAIHRDWSPAAIRSAIMTTAYPVN-----FAENEIGVVPATPLDFGAGHIDPN 610
AGVAAL+KA H DWSPA I+SA+MTTAY + + G +TP + GAGHI P
Sbjct: 565 AGVAALIKASHPDWSPAQIKSALMTTAYVHDNTYRPMKDAATGKA-STPFEHGAGHIHPV 623
Query: 611 KAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQ---ESTDLNYPSFAAVF 667
+A+ PGL+YD DY+EFLC Q++ + + C ++DLNYP+ + VF
Sbjct: 624 RALTPGLVYDIGQADYLEFLCTQHMTPMQLRTFTKNSNMTCRHTFSSASDLNYPAISVVF 683
Query: 668 TNETT-AKNFSRVVKNVGAEDSIYRA-VLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVE 725
++ + A R V NVG S Y V +F G ++ +EP+TL F Q L + ++V
Sbjct: 684 ADQPSKALTVRRTVTNVGPPSSTYHVKVTKFK-GADVIVEPNTLHFVSTNQKLSYKVTVT 742
Query: 726 IDRESPRVSYGYLKWIDQYNHTVSSPVV 753
+G L W D H V SPVV
Sbjct: 743 TKAAQKAPEFGALSWSDGV-HIVRSPVV 769
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O65351 | SUBL_ARATH | 3, ., 4, ., 2, 1, ., - | 0.4216 | 0.9484 | 0.9484 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00014846001 | SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (766 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 757 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-108 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 2e-30 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 4e-30 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-23 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 7e-23 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 1e-21 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 4e-20 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-18 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 4e-18 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 1e-17 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 6e-17 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 8e-17 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-16 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 1e-15 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-15 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 2e-15 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-15 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 3e-15 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 7e-15 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 9e-15 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-14 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 9e-14 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 2e-13 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 3e-13 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 1e-12 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-12 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 4e-12 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 1e-11 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 3e-11 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 4e-11 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 4e-11 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 1e-10 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 1e-10 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-10 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 3e-10 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 1e-09 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 2e-09 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 2e-09 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 4e-09 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 4e-09 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 5e-09 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 1e-08 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 2e-08 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 1e-07 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 1e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 1e-07 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 4e-07 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-06 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 2e-06 | |
| cd07479 | 255 | cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 fa | 3e-06 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 4e-06 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 7e-06 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 2e-05 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 4e-05 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 6e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 6e-05 | |
| pfam02225 | 96 | pfam02225, PA, PA domain | 1e-04 | |
| cd07494 | 298 | cd07494, Peptidases_S8_10, Peptidase S8 family dom | 2e-04 | |
| cd04059 | 297 | cd04059, Peptidases_S8_Protein_convertases_Kexins_ | 3e-04 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 4e-04 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 4e-04 | |
| cd07492 | 222 | cd07492, Peptidases_S8_8, Peptidase S8 family doma | 5e-04 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 6e-04 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 8e-04 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 0.001 | |
| TIGR03895 | 602 | TIGR03895, protease_PatA, cyanobactin maturation p | 0.002 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 0.002 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 0.002 | |
| cd04056 | 361 | cd04056, Peptidases_S53, Peptidase domain in the S | 0.002 | |
| cd07491 | 247 | cd07491, Peptidases_S8_7, Peptidase S8 family doma | 0.002 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 332 bits (854), Expect = e-108
Identities = 123/238 (51%), Positives = 151/238 (63%), Gaps = 6/238 (2%)
Query: 115 KLFTTHSPNFLGLKP--NSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWN 172
+L TT SP+FLGL L +A G+G+IIG++DTGIWPE SF D G P P W
Sbjct: 2 QLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWP 61
Query: 173 GRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAG 232
G C G F+PF CN KLIGAR FS G A G S + ++ S RD+ GHGTHT+STAAG
Sbjct: 62 GDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNS-DGEYRSPRDYDGHGTHTASTAAG 120
Query: 233 NHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMS 292
N V S G+A GTA G+APRA +A+YKV W SD+LA +DQAIADGVD++S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGG--CFGSDILAAIDQAIADGVDVIS 178
Query: 293 LSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTL 349
S+G + D IAIA L A+E GI V +AGN G ++ N APW+TTV A TL
Sbjct: 179 YSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-30
Identities = 57/126 (45%), Positives = 69/126 (54%), Gaps = 16/126 (12%)
Query: 487 TKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFS 546
A V SSRGP P S +KPDIVAPGVD+++ T YA S
Sbjct: 186 VAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMSTAP-----------GSGTGYARMS 233
Query: 547 GTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGH 606
GTSMAAPHVAG AALLK H DWSPA I++A+M TA P+ ++ V GAG
Sbjct: 234 GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG----VVYPVSRQGAGR 289
Query: 607 IDPNKA 612
+D +A
Sbjct: 290 VDALRA 295
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 4e-30
Identities = 52/96 (54%), Positives = 60/96 (62%), Gaps = 15/96 (15%)
Query: 500 GPDP-----ISP-------GILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSG 547
GP ++P LKPDI APGVD+LAA P E D+A SG
Sbjct: 215 GPGASTVPNVAPWVTTVAASTLKPDIAAPGVDILAAWTPEGADPGDARGE---DFAFISG 271
Query: 548 TSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583
TSMA+PHVAGVAALLK+ H DWSPAAI+SA+MTTAY
Sbjct: 272 TSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 69/215 (32%), Positives = 96/215 (44%), Gaps = 39/215 (18%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFS-PFVCNRKLIGARSFSK 198
G+GV + +IDTGI D P N K+ G F
Sbjct: 1 GKGVKVAVIDTGI--------DY--------------THPDLGGPGFPNDKVKGGYDFVD 38
Query: 199 GLQAAG--INVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAH 256
SA D GHGTH + AGN G GT +G+AP+A
Sbjct: 39 DDYDPMDTRPYPSPLGDASAGDATGHGTHVAGIIAGN--------GVNVGTIKGVAPKAD 90
Query: 257 VAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIE 316
+ YKVL + + ++A ++QA+ DG+D+++LSLG +D AIA +A++
Sbjct: 91 LYAYKVLGPGGSGTTD--VIIAAIEQAVDDGMDVINLSLGSSVNGP-DDPDAIAINNAVK 147
Query: 317 NGIVVVCAAGNDG-FPRSIHN--GAPWITTVGAGT 348
G+VVV AAGN G P +I + AP TVGA T
Sbjct: 148 AGVVVVAAAGNSGPAPYTIGSPATAPSAITVGAST 182
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 98.4 bits (246), Expect = 7e-23
Identities = 67/242 (27%), Positives = 94/242 (38%), Gaps = 69/242 (28%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G+G+ + ++DTGI F GR F V R
Sbjct: 1 GKGITVAVLDTGIDAPHPDFD------------GRIIRFADFVNTVNGRT---------- 38
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYA-KGTARGIAPRAHVA 258
+ D GHGTH + AG+ G A G +G+AP A++
Sbjct: 39 ---------------TPYDDNGHGTHVAGIIAGS--------GRASNGKYKGVAPGANLV 75
Query: 259 MYKVLWATDTEESAASDVLAGMDQAIAD----GVDIMSLSLGF-DQTPYFNDVIAIASLS 313
KVL D+ + SD++AG+D + + + +++LSLG Y D + A
Sbjct: 76 GVKVL--DDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVER 133
Query: 314 AIENGIVVVCAAGNDGFPRSIHNGAP----WITTVGAGTLDRSFHATVTLDNGLTFKGIS 369
+ GIVVV AAGN G P +P + TVGA DNG GIS
Sbjct: 134 LWDAGIVVVVAAGNSG-PGPGTITSPGNSPKVITVGAVD-----------DNGPHDDGIS 181
Query: 370 YF 371
YF
Sbjct: 182 YF 183
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 1e-21
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
++ FSSRGP G +KPD+VAPG ++++ +P + + Y SGTSMA
Sbjct: 180 ISYFSSRGP--TGDGRIKPDVVAPGENIVSCRSPG----GNPGAGVGSGYFEMSGTSMAT 233
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583
PHV+G ALL + +P ++ + TA
Sbjct: 234 PHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 4e-20
Identities = 54/213 (25%), Positives = 79/213 (37%), Gaps = 50/213 (23%)
Query: 143 VIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQA 202
V + +IDTG+ P+ P G + G
Sbjct: 1 VTVAVIDTGVDPD---------HPDLDGLFGGGDGGNDD--------------------- 30
Query: 203 AGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKV 262
E D GHGTH + A + G G+AP A + KV
Sbjct: 31 ----DDNENGPTDPDDGNGHGTHVAGIIAASANNG---------GGVGVAPGAKLIPVKV 77
Query: 263 LWATDTEESAASDVLAGMDQAIAD-GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVV 321
L ++SD+ A +D A AD G D+++LSLG +P + + + + G++V
Sbjct: 78 LD--GDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAIDYALAKLGVLV 135
Query: 322 VCAAGNDGFPRSIHNGAP----WITTVGAGTLD 350
V AAGNDG + G P + VGA D
Sbjct: 136 VAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRD 168
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 2e-18
Identities = 35/88 (39%), Positives = 46/88 (52%), Gaps = 21/88 (23%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFSS GP+ ++ APGVD+L+ DYA SGTSMA P
Sbjct: 163 ASFSSTGPEV--------ELAAPGVDILSTY-------------PNNDYAYLSGTSMATP 201
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTT 581
HVAGVAAL+ + + + A +R A+ T
Sbjct: 202 HVAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 4e-18
Identities = 45/103 (43%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 490 APHVASFSSRG---------PDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVT 540
A FSS G PD KPD+ APGVDV +A
Sbjct: 161 DDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSA---------RQGANGDG 211
Query: 541 DYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583
Y SGTSMAAPHVAGVAALL A H D SP I+ A+ TAY
Sbjct: 212 QYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-17
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 8/118 (6%)
Query: 356 TVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNK---SICHLGSLNPDEVTGKVVFCD 412
VTL NG T G S +P + + PL Y + S+C GSL+P +V GK+V CD
Sbjct: 1 VVTLGNGKTIVGQSLYPGN--LKTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCD 58
Query: 413 NSNRIDTYSQMEEVDRAGAYAAIFLTDTP---DIDSDEYYIPSLILPTSAGTSIRQYV 467
++ + V AG I D D+ +D + +P++ + GT+I Y+
Sbjct: 59 RGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYI 116
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 6e-17
Identities = 52/190 (27%), Positives = 75/190 (39%), Gaps = 57/190 (30%)
Query: 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQ 201
GV + +IDTGI ++G +F+
Sbjct: 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFT---- 29
Query: 202 AAGINVSKEYDFDSARDFFGHGTHTSST--AAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
D + +D GHGTH + A N V V G+AP A +
Sbjct: 30 --------GDDNNDYQDGNGHGTHVAGIIAALDNGVGVV-----------GVAPEADLYA 70
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGI 319
KVL D SD++AG++ AI +G+DI+++SLG P + + A A GI
Sbjct: 71 VKVL--NDDGSGTYSDIIAGIEWAIENGMDIINMSLG---GPSDSPALREAIKKAYAAGI 125
Query: 320 VVVCAAGNDG 329
+VV AAGN G
Sbjct: 126 LVVAAAGNSG 135
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 8e-17
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 21/122 (17%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+A FS+ G P+ KPDIVAPG ++L++ + Y SGTSMAA
Sbjct: 177 IADFSNYGG-PVDGI--KPDIVAPGGNILSSGPGG----------DLGGYDSHSGTSMAA 223
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
P VAG AALL + + +P +R+ ++TTA + + FG G ++ KA
Sbjct: 224 PLVAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLDRS--------FGYGLLNLGKA 275
Query: 613 MD 614
+
Sbjct: 276 VK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 1e-16
Identities = 35/72 (48%), Positives = 41/72 (56%), Gaps = 15/72 (20%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+A FSSRGP +KPDI APGV++ +AV Y SGTSMAA
Sbjct: 187 LADFSSRGPSTYGR--IKPDISAPGVNIRSAV-------------PGGGYGSSSGTSMAA 231
Query: 553 PHVAGVAALLKA 564
PHVAGVAALL +
Sbjct: 232 PHVAGVAALLWS 243
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-15
Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 22/102 (21%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
VASFSSRGP G +KPD+VAPG +L+A + + + + SGTSMA
Sbjct: 201 VASFSSRGP--TYDGRIKPDLVAPGTGILSARSGGGGIGDTSDSAYTS----KSGTSMAT 254
Query: 553 PHVAGVAALLKAIHRDW------------SPAAIRSAIMTTA 582
P VAG AALL R + S A +++ ++ +A
Sbjct: 255 PLVAGAAALL----RQYFVDGYYPTKFNPSAALLKALLINSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 15/121 (12%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
+ FSS GP + LKPD+ APG ++L+ + G Y A+ SGTSMA P
Sbjct: 189 SYFSSWGPT--NELYLKPDVAAPGGNILSTYP-----LAGGGY------AVLSGTSMATP 235
Query: 554 HVAGVAALLKAIHR-DWSPAAIRSAIMTTAYPVNFAENE-IGVVPATPLDFGAGHIDPNK 611
+VAG AALL SPA +R + +TA P+ +++ A GAG ++ K
Sbjct: 236 YVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYK 295
Query: 612 A 612
A
Sbjct: 296 A 296
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-15
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 11/85 (12%)
Query: 497 SSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVA 556
P S G DI APG D+L++ YA SGTSMAAP VA
Sbjct: 168 DGTPASPSSNGGAGVDIAAPGGDILSSPTTG-----------GGGYATLSGTSMAAPIVA 216
Query: 557 GVAALLKAIHRDWSPAAIRSAIMTT 581
GVAALL + + D +PA +++A+++T
Sbjct: 217 GVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 2e-15
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 20/96 (20%)
Query: 487 TKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFS 546
T +ASFS+ G + D+ APGVD+L+ Y S
Sbjct: 183 TDSNDALASFSNYGKKTV-------DLAAPGVDILSTSPGG-------------GYGYMS 222
Query: 547 GTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
GTSMA PHVAG AALL +++ + + A I+ AI+++A
Sbjct: 223 GTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 3e-15
Identities = 46/138 (33%), Positives = 63/138 (45%), Gaps = 25/138 (18%)
Query: 485 LGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYAL 544
+ ++ FSS GP P LKPDI APG ++ + V N Y
Sbjct: 226 VPNPNGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVNDN-------------TYGY 270
Query: 545 FSGTSMAAPHVAGVAAL----LKAIHRDWSPA----AIRSAIMTTAYPVNFAENEIGVVP 596
SGTSMA+PHVAG +AL LK + S +++ +M TA P ++E
Sbjct: 271 MSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPL--DSEDTKTY 328
Query: 597 ATPLDFGAGHIDPNKAMD 614
+P GAG ID KA+
Sbjct: 329 YSPRRQGAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 7e-15
Identities = 52/218 (23%), Positives = 74/218 (33%), Gaps = 76/218 (34%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G GV + ++DTGI F GR G F
Sbjct: 24 GSGVDVYVLDTGIRTTHVEF------------GGRAIWGADF------------------ 53
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
D D GHGTH + T G G+A +A++
Sbjct: 54 -----------VGGDPDSDCNGHGTHVAGTVGGKTY--------------GVAKKANLVA 88
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADGVD-----IMSLSLGFDQTPYFNDVIAIASLSA 314
KVL + S ++AG++ D + ++SLG + + +A +A
Sbjct: 89 VKVLDCNGS--GTLSGIIAGLEWVANDATKRGKPAVANMSLGGGASTALDAAVA----AA 142
Query: 315 IENGIVVVCAAGNDG------FPRSIHNGAPWITTVGA 346
+ G+VVV AAGN P S AP TVGA
Sbjct: 143 VNAGVVVVVAAGNSNQDACNYSPAS----APEAITVGA 176
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 9e-15
Identities = 30/70 (42%), Positives = 35/70 (50%), Gaps = 15/70 (21%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+A FS RGP G +KPDI APGV++L A Y SGTS+AA
Sbjct: 359 IAIFSGRGP--TRDGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAA 403
Query: 553 PHVAGVAALL 562
VAG ALL
Sbjct: 404 AIVAGACALL 413
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 30/199 (15%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCE------NGTAFSPFVCNRKLIGA 193
G+G+++ +ID+G+ P ++F + +++ E + N K+ A
Sbjct: 10 GEGMVVAVIDSGVDPTHDAF--RLDDDSKAKYSEEFEAKKKKAGIGYGKYY--NEKVPFA 65
Query: 194 RSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAP 253
+++ ++ E D S HG H + AGN +G+AP
Sbjct: 66 YNYADNND----DILDEDDGSS------HGMHVAGIVAGN-----GDEEDNGEGIKGVAP 110
Query: 254 RAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFD---QTPYFNDVIAIA 310
A + KV + + ++ A+ G D++++SLG +D A
Sbjct: 111 EAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDL--DDPEQQA 168
Query: 311 SLSAIENGIVVVCAAGNDG 329
A E G+VVV AAGNDG
Sbjct: 169 IKRAREAGVVVVVAAGNDG 187
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 9e-14
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 22/89 (24%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFS+ G + D+ APG +L+ DYA SGTSMA P
Sbjct: 190 ASFSNYGK-----WV---DVSAPGGGILSTT-------------PDGDYAYMSGTSMATP 228
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAGVAALL + S + +R A+ TA
Sbjct: 229 HVAGVAALLYSQGP-LSASEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 2e-13
Identities = 44/202 (21%), Positives = 62/202 (30%), Gaps = 58/202 (28%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G GV +G+ID+GI F R
Sbjct: 2 GAGVKVGVIDSGIDLSHPEFAG--------------------------------RVSEAS 29
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
A + + D HGTH + A G H G+AP A +
Sbjct: 30 YYVAVNDAGYASNGDGD----SHGTHVAGVIAAARDGGGMH---------GVAPDATLYS 76
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFD------------QTPYFNDVI 307
+ + + S A D+ A D A GV I++ S G + + +
Sbjct: 77 ARASASAGSTFSDA-DIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTL 135
Query: 308 AIASLSAIENGIVVVCAAGNDG 329
A A G + V AAGNDG
Sbjct: 136 LAALARAANAGGLFVFAAGNDG 157
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 3e-13
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 38 TYIIHM-DHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQL 96
TYI+ D K + F +H+SWH S + A+ + +LYSY H GF+A+LT +
Sbjct: 1 TYIVKFKDGVSKAAVFSSHKSWHASSKEEAAGAS-----ILYSYKHGFNGFAAKLTEEEA 55
Query: 97 SEIEKSP 103
++ K P
Sbjct: 56 EKLRKHP 62
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 1e-12
Identities = 33/71 (46%), Positives = 44/71 (61%), Gaps = 11/71 (15%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
DI APGVD+L+A IG+ T A SGTSMAAPHVAG+AA L ++ D SP
Sbjct: 194 DIFAPGVDILSA--------WIGSD---TATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242
Query: 572 AAIRSAIMTTA 582
A +++ ++ A
Sbjct: 243 AEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 52/243 (21%), Positives = 83/243 (34%), Gaps = 81/243 (33%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G GV + ++DTGI D P AF+ R + +SF G
Sbjct: 7 GAGVRVAVLDTGI--------DLTHP--------------AFA----GRDIT-TKSFVGG 39
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
+ +D GHGTH + T G V G + G+A A +A+
Sbjct: 40 --------------EDVQDGHGHGTHCAGTIFGRDVPGPRY---------GVARGAEIAL 76
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAI---------- 309
+ +LAG+ A+A+G D++S+SLG D +
Sbjct: 77 IGKV--LGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGWPPGLAFSRALEA 134
Query: 310 ---------------ASLSAIENGIVVVCAAGN----DGFPRSIHNGAPWITTVGAGTLD 350
A+ +A+ G ++V AAGN + N A + +G +
Sbjct: 135 YRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVG 194
Query: 351 RSF 353
Sbjct: 195 ALG 197
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 4e-12
Identities = 34/90 (37%), Positives = 45/90 (50%), Gaps = 10/90 (11%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLA-AVAPNIPFIEIGNYELVTD-YALFSGTSMA 551
AS+S+ GP D+ APG D + P G Y GTSMA
Sbjct: 204 ASYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMA 255
Query: 552 APHVAGVAALLKAIHRDWSPAAIRSAIMTT 581
APHVAGVAAL+K+++ +PA I S + +T
Sbjct: 256 APHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 48/213 (22%), Positives = 68/213 (31%), Gaps = 53/213 (24%)
Query: 144 IIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAA 203
+G++DTGI N S F
Sbjct: 1 TVGVLDTGIDV----------------------NHPDLSGRYIGLAYRNGYDF------- 31
Query: 204 GINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVL 263
V + D D GHGTH + A G G+AP A + KVL
Sbjct: 32 ---VDNDPDPTPDDDNNGHGTHVAGIIAAGDNNGSG--------GVGVAPNAKLESVKVL 80
Query: 264 WATDTEESAASDVLAGMDQAI--ADGVDIMSLSLG-FDQTPYFNDVIAIASL--SAIENG 318
+ + S++ ++ A + + ++++SLG D P A G
Sbjct: 81 PGSGGTD---SELAGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNGADNKG 137
Query: 319 IVVVCAAGNDGF-----PRSIHNGAPWITTVGA 346
+ V AAGN G P S A I TVGA
Sbjct: 138 SLFVVAAGNGGDYADNNPVSDPASANNIITVGA 170
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 45/156 (28%), Positives = 63/156 (40%), Gaps = 22/156 (14%)
Query: 203 AGINVSKEYDF----DSARDFFGHGTHTSSTAAG--NHVEGVSHFGYAKGTARGIAPRAH 256
+ YDF A D GHGTH + A N+ GV+ G+AP+A
Sbjct: 47 LKVKFVLGYDFVDNDSDAMDDNGHGTHVAGIIAAATNNGTGVA----------GVAPKAK 96
Query: 257 VAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIE 316
+ KVL + +D+ G+ A G +++LSLG + + A A
Sbjct: 97 IMPVKVL--DANGSGSLADIANGIRYAADKGAKVINLSLG---GGLGSTALQEAINYAWN 151
Query: 317 NGIVVVCAAGNDGFPR-SIHNGAPWITTVGAGTLDR 351
G+VVV AAGN+G S P V A D
Sbjct: 152 KGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQDD 187
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 4e-11
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 18/142 (12%)
Query: 206 NVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWA 265
+S FD+ GHGTH S T G G AKG G+AP A + KVL
Sbjct: 33 RISATEVFDAG----GHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVL-- 77
Query: 266 TDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAA 325
D + S ++AGM+ A+ D++S+SLG A+ +LS + G + V +A
Sbjct: 78 -DDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYSEDPLEEAVEALSN-QTGALFVVSA 135
Query: 326 GNDGFPRSIHNG-APWITTVGA 346
GN+G S G A +VGA
Sbjct: 136 GNEGHGTSGSPGSAYAALSVGA 157
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 38/109 (34%), Positives = 50/109 (45%), Gaps = 11/109 (10%)
Query: 480 FILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELV 539
F L + V S+SSRGP G KPD+ A G A AP G +
Sbjct: 208 FYLFGYLPGGSGDVVSWSSRGPSIA--GDPKPDLAAIGA---FAWAPGRVLDSGGALDGN 262
Query: 540 TDYALFSGTSMAAPHVAGVAALL------KAIHRDWSPAAIRSAIMTTA 582
+ LF GTSMA P AG AAL+ K ++ P +R+ +M+TA
Sbjct: 263 EAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 52/206 (25%), Positives = 72/206 (34%), Gaps = 66/206 (32%)
Query: 139 YGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSK 198
G+GV + ++DTGI + G C G
Sbjct: 11 TGKGVKVAVVDTGIDYTHPAL-------------GGC---------------FGP----- 37
Query: 199 GLQAAGINVSKEYDF--------------DSARDFFGHGTHTSSTAAGNHVEGVSHFGYA 244
G V+ YDF D D GHGTH + A N F
Sbjct: 38 -----GCKVAGGYDFVGDDYDGTNPPVPDDDPMDCQGHGTHVAGIIAAN--PNAYGF--- 87
Query: 245 KGTARGIAPRAHVAMYKVLWATDTEESAASDVL-AGMDQAIADGVDIMSLSLGFDQTPYF 303
G+AP A + Y+V S D + A +A DG D+++ SLG
Sbjct: 88 ----TGVAPEATLGAYRVF---GCSGSTTEDTIIAAFLRAYEDGADVITASLGGPSGWSE 140
Query: 304 NDVIAIASLSAIENGIVVVCAAGNDG 329
+ +AS ++ G+VV AAGNDG
Sbjct: 141 DPWAVVAS-RIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-10
Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 27/130 (20%)
Query: 487 TKPAPHVASF---SSRGPDPISPGILKPDIVAP-GVDVLAAVAPNIPFIEIGNYELVTDY 542
P +SF R P P KPD+ AP GV+ + P
Sbjct: 166 PAPGGTPSSFDPVGIRLPTPE--VRQKPDVTAPDGVNGTVDGDGDGPPN----------- 212
Query: 543 ALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDF 602
F GTS AAPH AGVAAL+ + + +PA IR A+ +TA + P
Sbjct: 213 --FFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMG--------EPGYDNAS 262
Query: 603 GAGHIDPNKA 612
G+G +D ++A
Sbjct: 263 GSGLVDADRA 272
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 52/237 (21%), Positives = 80/237 (33%), Gaps = 43/237 (18%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G+G I+G+ DTG+ F+D +RK++
Sbjct: 6 GKGQIVGVADTGLDTNHCFFYDPNFNKTNLF----------------HRKIV-------- 41
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
++S D GHGTH + AG + S Y +G+AP+A +
Sbjct: 42 ---RYDSLSDTKDDVD-----GHGTHVAGIIAGKGNDSSSISLY-----KGVAPKAKLYF 88
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIEN-G 318
+ T S+ D+ G I S S G + + A N
Sbjct: 89 QD-IGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPD 147
Query: 319 IVVVCAAGNDGFPRSIHNGAPW----ITTVGAGTLDRSFHATVTLDNGLTFKGISYF 371
I+ V +AGNDG S G+P + TVGA + L ++ F
Sbjct: 148 ILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGEGGLGQSDNSDTVASF 204
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 3e-10
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 24/121 (19%)
Query: 218 DFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESA-ASDV 276
D GHGT + A N G +G+AP + Y+V + SA +S +
Sbjct: 51 DKLGHGTAVAGQIAAN------------GNIKGVAPGIGIVSYRVF---GSCGSAESSWI 95
Query: 277 LAGMDQAIADGVDIMSLSLG----FDQTPYFNDVIAIASLSAIE----NGIVVVCAAGND 328
+ + A DGVD+++LSLG +DV A AI G +VV AAGND
Sbjct: 96 IKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGND 155
Query: 329 G 329
G
Sbjct: 156 G 156
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 1e-09
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 30/120 (25%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
+SFS GP D+ APG ++++ G+ T SGTS AAP
Sbjct: 191 SSFSLPGP--------WVDLAAPGENIVSLSPG-------GDGLATT-----SGTSFAAP 230
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA-YPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
V+G AAL+++ D + A +R I TA +P ++ G G +DP A
Sbjct: 231 FVSGTAALVRSRFPDLTAAQVRRRIEATADHPARGGRDDY---------VGYGVVDPVAA 281
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 40/137 (29%), Positives = 56/137 (40%), Gaps = 29/137 (21%)
Query: 221 GHGTHTSST--AAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLA 278
GHGTH + A GN+ G++ G+A + K L SD +
Sbjct: 64 GHGTHVAGIIGAVGNNGIGIA----------GVAWNVKIMPLKFL--GADGSGTTSDAIK 111
Query: 279 GMDQAIADGVDIMSLSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-------- 329
+D A+ G I++ S G + D IA AI+ GI+ V AAGNDG
Sbjct: 112 AIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAAAGNDGTNNDKTPT 167
Query: 330 FPRSIHNGAPWITTVGA 346
+P S I +V A
Sbjct: 168 YPAS--YDLDNIISVAA 182
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-09
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 17/93 (18%)
Query: 497 SSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVA 556
SSRGP G L I APG A+A + N+ L L +GTSM++P+
Sbjct: 333 SSRGPTA--DGALGVSISAPG----GAIAS------VPNWTL-QGSQLMNGTSMSSPNAC 379
Query: 557 GVAAL----LKAIHRDWSPAAIRSAIMTTAYPV 585
G AL LKA ++P ++R A+ TA +
Sbjct: 380 GGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 4e-09
Identities = 35/114 (30%), Positives = 43/114 (37%), Gaps = 22/114 (19%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+FS+ + DI APGVD+++A Y SGTSMA
Sbjct: 199 TGNFSAVANFSNG----EVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMAT 241
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPL-DFGAG 605
PHVAGVAAL + P A A+ A P L D G G
Sbjct: 242 PHVAGVAAL----WAEALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVG 291
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 15/90 (16%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
ASFSS GP + G LKPD++A G + + +GTS +
Sbjct: 186 KASFSSIGPT--ADGRLKPDVMALGTGIYVINGDG-------------NITYANGTSFSC 230
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
P +AG+ A L H +W+ I+ AI+ +A
Sbjct: 231 PLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 5e-09
Identities = 53/222 (23%), Positives = 85/222 (38%), Gaps = 44/222 (19%)
Query: 139 YGQGVIIGIIDTGIWPESESFHDK-GMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFS 197
G+GV++GIIDTGI F ++ G + W+ G G ++
Sbjct: 2 TGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPP------PGGYYGGGEYT 55
Query: 198 KGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHV 257
+ + A + YD +RD GHGTH + AAGN G +G+AP A +
Sbjct: 56 EEIINAALASDNPYDIVPSRDENGHGTHVAGIAAGN--------GDNNPDFKGVAPEAEL 107
Query: 258 AMYKVLWATDTEESAASDVLAGMDQAIADGVD-------------IMSLSLGFDQTP--- 301
+ K+ A DV + I + ++++SLG +
Sbjct: 108 IVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDG 167
Query: 302 ------YFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNG 337
Y + + + GI VV AGN+G + H+G
Sbjct: 168 TSLLERYIDAISRLR-------GIAVVVGAGNEGNTQHHHSG 202
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 65/249 (26%), Positives = 87/249 (34%), Gaps = 50/249 (20%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G+GV+I I+DTG+ + + + A+ G
Sbjct: 1 GEGVVIAIVDTGV-----DYSHPDLDIYGNFSWKLKFDYKAY--------------LLPG 41
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTA-RGIAPRAHVA 258
+ G YDF S HGT +S AAG + +GY RGIAP A +A
Sbjct: 42 MDKWGGFYVIMYDFFS------HGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIA 95
Query: 259 MYKVLWATDTEESAASDVLAGMDQAIADG---------VDIMSLSLGFDQTPYFNDVIAI 309
K LW D A AG D VD++S S G Y +
Sbjct: 96 AVKALWFGDVI--YAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAPGL 153
Query: 310 ASLSAIEN------GIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGL 363
S + + G+ +V AAGN G G IT GA +L S A T +
Sbjct: 154 DISSLVIDALVTYTGVPIVSAAGNGGP------GYGTITAPGAASLAISVGA-ATNFDYR 206
Query: 364 TFKGISYFP 372
F Y P
Sbjct: 207 PFYLFGYLP 215
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 59/226 (26%), Positives = 85/226 (37%), Gaps = 68/226 (30%)
Query: 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQ 201
G+ I +ID G E+F AF N +++G F
Sbjct: 1 GITIAVIDAGFPKVHEAF--------------------AFKHLFKNLRILGEYDF----- 35
Query: 202 AAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYK 261
V + + D HGT ST AG Y G G AP A + +
Sbjct: 36 -----VDNSNNTNYTDDD--HGTAVLSTMAG----------YTPGVMVGTAPNASYYLAR 78
Query: 262 ---VLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFND------------- 305
V T EE + +A + A + GVDI+S SLG+ T + N
Sbjct: 79 TEDVASETPVEED---NWVAAAEWADSLGVDIISSSLGY--TTFDNPTYSYTYADMDGKT 133
Query: 306 -VIAIASLSAIENGIVVVCAAGNDGFPRSIHNGAP----WITTVGA 346
I+ A+ A G++VV +AGN+G + GAP + +VGA
Sbjct: 134 SFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGA 179
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPA 572
+ APG ++ + + Y SGTS AAPHV+G AALL +
Sbjct: 208 LAAPGENIYSTD-----------PDGGNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTAD 256
Query: 573 AIRSAIMTTA 582
+R ++TTA
Sbjct: 257 QVRQTLLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 31/71 (43%), Positives = 38/71 (53%), Gaps = 14/71 (19%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
ASFS+ G + DI APGV + + P + GNYE SGTSMAA
Sbjct: 198 KASFSNYG-RWV-------DIAAPGVGTILSTVPKLDGDGGGNYEY------LSGTSMAA 243
Query: 553 PHVAGVAALLK 563
PHV+GVAAL+
Sbjct: 244 PHVSGVAALVL 254
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 54.6 bits (130), Expect = 1e-07
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
VASFS+ G DI APGV++L+ ++ G DY SGTSMAA
Sbjct: 318 VASFSNDGSPT------GVDIAAPGVNILS-LSAVNTLPGDGA-----DYVTLSGTSMAA 365
Query: 553 PHVAGVAALLKAIH-RDWSPAAIRSAIMTTAYPVNFAENEIGV 594
PHV+GVAAL+ + + + +PA +R+ I+TTA + + V
Sbjct: 366 PHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSGVDNLV 408
|
Length = 508 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-07
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEI-GNYELVTDYALFSGTSMAA 552
AS+S+ G D+VAPGV + + G Y FSGTS A+
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGIWTTGTGRGSAGDYPGGG-----YGSFSGTSFAS 213
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTT 581
P AGVAAL+ + + + +PA + + +T
Sbjct: 214 PVAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 50.7 bits (120), Expect = 2e-06
Identities = 47/171 (27%), Positives = 66/171 (38%), Gaps = 18/171 (10%)
Query: 203 AGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKV 262
AG + D GHGTH + T A + G+AP A + + KV
Sbjct: 166 AGGDFVDGDPEPPFLDDNGHGTHVAGTIAAVIFDNG-------AGVAGVAPGAKLLLVKV 218
Query: 263 LWATDTEESAASDVLAGMDQAIADG--VDIMSLSLG--FDQTPYFNDVIAIASLSAIENG 318
L + SDV G++ A G D+++LSLG + A+A+ A G
Sbjct: 219 L-GSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGSLSDSASPALGDALAAA-ANAGG 276
Query: 319 IVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS 369
+V+V AAGNDG N + A + A LD T S
Sbjct: 277 VVIVAAAGNDGS-----NASGGDLAYPASYPAPNVIAVGALDLSDTVASFS 322
|
Length = 508 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 492 HVASFSSRGPD----PISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSG 547
++A FSSRG P G +KPDIV G V + +L SG
Sbjct: 165 NIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGS-------------KLKGGCRALSG 211
Query: 548 TSMAAPHVAGVAALL-KAIHRDWS---PAAIRSAIMTTA 582
TS+A+P VAG ALL + PA+++ A++ +A
Sbjct: 212 TSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESA 250
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173805 cd07479, Peptidases_S8_SKI-1_like, Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 24/142 (16%)
Query: 214 DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
+ D GHGT + A + + + G AP A + +++V T+ + S
Sbjct: 39 KTLDDGLGHGTFVAGVIASSREQCL-----------GFAPDAEIYIFRVF--TNNQVSYT 85
Query: 274 SDVLAGMDQAIADGVDIMSLSLG---FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDGF 330
S L + AI +D+++LS+G F P+ + V + + N I++V A GNDG
Sbjct: 86 SWFLDAFNYAILTKIDVLNLSIGGPDFMDKPFVDKVWELTA-----NNIIMVSAIGNDG- 139
Query: 331 PR--SIHNGAPWITTVGAGTLD 350
P +++N A + +G G +D
Sbjct: 140 PLYGTLNNPADQMDVIGVGGID 161
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 255 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 26/71 (36%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
D APGVDV A AP G Y V SGTS AAP V ALL
Sbjct: 168 DFAAPGVDVWVA-APG------GGYRYV------SGTSFAAPFVTAALALLLQASPLAPD 214
Query: 572 AAIRSAIMTTA 582
A T
Sbjct: 215 DARARLAATAK 225
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 7e-06
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Query: 486 GTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDY--- 542
+ +S GP PG +KPD+VA G ++ A P+ + L T
Sbjct: 191 SAVGPAPAGATTSSGPGS--PGPIKPDVVAFGGNL--AYDPSGNAADGDLSLLTTLSSPS 246
Query: 543 ----ALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIR 575
GTS AAP A +AA L A + SP IR
Sbjct: 247 GGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIR 283
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 35/127 (27%), Positives = 47/127 (37%), Gaps = 34/127 (26%)
Query: 214 DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA 273
D A D GHGT G S +A IAP A K+
Sbjct: 55 DPACDENGHGT------------GESANLFA------IAPGAQFIGVKL------GGPDL 90
Query: 274 SDVLAGMDQAIADGVDIMSLSLGFDQT----------PYFNDVIAIASLSAIENGIVVVC 323
+ + +AI+ DI+S S G+D P +A A+ GIVVV
Sbjct: 91 VNSVGAFKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVF 150
Query: 324 AAGNDGF 330
+AGN G+
Sbjct: 151 SAGNGGW 157
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 20/90 (22%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
VA+FS+ G + D+ APG + + N +Y SGTSMAA
Sbjct: 221 VANFSNYGKKNV-------DVFAPGERIYSTTPDN-------------EYETDSGTSMAA 260
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
P V+GVAAL+ + + + + ++ I+ +
Sbjct: 261 PVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 58/230 (25%), Positives = 77/230 (33%), Gaps = 73/230 (31%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G G+++ IDTG+ D P + ++ G G +
Sbjct: 1 GTGIVVANIDTGV--------DWTHPALKNKYRGW--GGGSADH---------------- 34
Query: 200 LQAAGINVSKEYD-FDSAR------DFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIA 252
+Y+ FD D GHGTHT T GN +G G A G AR IA
Sbjct: 35 ----------DYNWFDPVGNTPLPYDDNGHGTHTMGTMVGNDGDG-QQIGVAPG-ARWIA 82
Query: 253 PRAHVAMYKVLWATDTEESAASDVLAGMDQAIA----DGV--------DIMSLSLGFDQT 300
RA + +D L +A G D+++ S G
Sbjct: 83 CRA--------LDRNG--GNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG 132
Query: 301 PYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNGAPWIT----TVGA 346
A+A+ A GI V AAGNDG S N P VGA
Sbjct: 133 DNEWLQPAVAAWRAA--GIFPVFAAGNDGPRCSTLNAPPANYPESFAVGA 180
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 6e-05
Identities = 33/129 (25%), Positives = 59/129 (45%), Gaps = 24/129 (18%)
Query: 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESA---ASDVLA 278
HGTH + AA + E + G+AP A + K+ DT + + ++
Sbjct: 187 HGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKI---GDTRLGSMETGTALVR 235
Query: 279 GMDQAIADGVDIMSLSLGFD-QTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNG 337
M AI D++++S G P +I + + + ++G++ V +AGN+G
Sbjct: 236 AMIAAIETKCDLINMSYGEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNG-------- 287
Query: 338 APWITTVGA 346
P ++TVGA
Sbjct: 288 -PALSTVGA 295
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|216938 pfam02225, PA, PA domain | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 7/90 (7%)
Query: 380 APLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIF--- 436
PL Y N + C L +V GK+V + E RAGA I
Sbjct: 8 GPLVYVGNGDDAGGCCPEDLADSDVKGKIVLVRRGG-CSFVEKAENAQRAGAAGVIIYNN 66
Query: 437 ---LTDTPDIDSDEYYIPSLILPTSAGTSI 463
D + IP + + G ++
Sbjct: 67 DTGGLGGTVGDPSDVTIPVVFISYEDGEAL 96
|
The PA (Protease associated) domain is found as an insert domain in diverse proteases. The PA domain is also found in a plant vacuolar sorting receptor and members of the RZF family. It has been suggested that this domain forms a lid-like structure that covers the active site in active proteases, and is involved in protein recognition in vacuolar sorting receptors. Length = 96 |
| >gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 11/105 (10%)
Query: 494 ASFSSRGPDPISPGILKPDIVA------PGVDVLAAVAP----NIPFIEIGNYELVTD-Y 542
+S++S I PG PD+ ++ V P + + D +
Sbjct: 183 SSYASGFRSKIYPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFPDGTPPNDGW 242
Query: 543 ALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNF 587
+FSGTS AAP VAGV AL+ + SP RS + TA V
Sbjct: 243 GVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTK 287
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 298 |
| >gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 51/251 (20%), Positives = 74/251 (29%), Gaps = 84/251 (33%)
Query: 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLI 191
W G+GV + ++D G+ D P +N + T
Sbjct: 30 PAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDPEASYDFNDNDPDPTPRYD-------- 81
Query: 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAA--GNHVEGVSHFGYAKGTAR 249
D HGT + A GN+
Sbjct: 82 --------------------------DDNSHGTRCAGEIAAVGNNGICG----------V 105
Query: 250 GIAPRAHVAMYKVL--WATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVI 307
G+AP A + ++L TD E+ + L I DI S S G D D
Sbjct: 106 GVAPGAKLGGIRMLDGDVTDVVEAES---LGLNPDYI----DIYSNSWGPDDDGKTVDGP 158
Query: 308 AIASLSAIENGI---------VVVCAAGN----------DGFPRSIHN---GA------- 338
+ A+ENG+ + V AAGN DG+ SI+ A
Sbjct: 159 GPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTANGVR 218
Query: 339 PWITTVGAGTL 349
+ VG+ L
Sbjct: 219 ASYSEVGSSVL 229
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 4e-04
Identities = 48/210 (22%), Positives = 73/210 (34%), Gaps = 55/210 (26%)
Query: 142 GVIIGIIDTGIWPESESFHDKGM----------PPVPRRWNGRCENGTAFSPFVCNRKLI 191
GV++ ++DTG+ G+ P + +GR + T +V +
Sbjct: 1 GVVVAVLDTGVLFHHP--DLAGVLLPGYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVP 58
Query: 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGI 251
G HGTH + T A GV G A G+
Sbjct: 59 PGGFCGSG----------------VSPSSWHGTHVAGTIAAVTNNGV-------GVA-GV 94
Query: 252 APRAHVAMYKVLWATDTEESAASDVLAGMDQA---IADGV-------DIMSLSLGFDQ-- 299
A A + +VL SD++ GM A GV +++LSLG D
Sbjct: 95 AWGARILPVRVLGKCG---GTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGAC 151
Query: 300 TPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
+ + I G++VV AAGN+G
Sbjct: 152 SATMQNAIN----DVRARGVLVVVAAGNEG 177
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 4e-04
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 17/76 (22%)
Query: 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH----RD 568
I+APG ++L A + G E V SGTS A P V GVAALL ++
Sbjct: 138 ILAPGENILGA--------QPGG-ETVRL----SGTSFATPVVTGVAALLLSLQLQQGET 184
Query: 569 WSPAAIRSAIMTTAYP 584
P A+R+A++ +A P
Sbjct: 185 PDPQAVRTALLNSAIP 200
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 13/65 (20%)
Query: 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPA 572
A GVD++A AP+ G Y V+ G S AAPHV G+ ALL + D
Sbjct: 165 FSADGVDIIAP-APH------GRYLTVS------GNSFAAPHVTGMVALLLSEKPDIDAN 211
Query: 573 AIRSA 577
++
Sbjct: 212 DLKRL 216
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 222 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLA-GM 280
HGT +S AG + G+ P A + V E A++ LA +
Sbjct: 38 HGTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARAL 86
Query: 281 DQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
D GV ++++SL P N ++A A +A G+V+V AAGNDG
Sbjct: 87 DWLAEQGVRVVNISLA---GPP-NALLAAAVAAAAARGMVLVAAAGNDG 131
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 8e-04
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 198 KGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHV 257
GL G + D D GHGT + AG EG G A AR + R
Sbjct: 31 PGLVLPGGDFVG--SGDGTDDCDGHGTLVAGIIAGRPGEGDGFSGVAPD-ARILPIRQTS 87
Query: 258 AMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG--FDQTPYFNDVIAIASLS-A 314
A ++ + + + +A G D++++SL +D A++ A
Sbjct: 88 AAFEPD-EGTSGVGDLGTLAKAIRRAADLGADVINISLVACLPAGSGADDPELGAAVRYA 146
Query: 315 IENGIVVVCAAGNDG 329
++ G+VVV AAGN G
Sbjct: 147 LDKGVVVVAAAGNTG 161
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 278 AGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAI--ENGIVVVCAAGNDGFPRSI- 334
A + A G DI+ +G+ P+F D ++ + G++ +AGNDG SI
Sbjct: 81 AAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIF 140
Query: 335 -HNGAPWITTVGA 346
H AP VGA
Sbjct: 141 GHAAAPGAIAVGA 153
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|234383 TIGR03895, protease_PatA, cyanobactin maturation protease, PatA/PatG family | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMD 281
HGTH +S G V GIAP+ + + + + D+ ++
Sbjct: 1 HGTHVASIIFGQPGSPVP----------GIAPKCRGLIIPI-FFDGARRISQLDLARAIE 49
Query: 282 QAIADGVDIMSLSLG-FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
A+ G +I+++S G T + A EN I++V AAGNDG
Sbjct: 50 LAVNAGANIINISAGQLTDTGEAERWLEDAVRLCQENNILIVAAAGNDG 98
|
This model describes a protease domain associated with the maturation of various members of the cyanobactin family of ribosomally produced, heavily modified bioactive metabolites. Members include the PatA protein and C-terminal domain of the PatG protein of Prochloron didemni, TenA and a region of TenG from Nostoc spongiaeforme var. tenue, etc. Length = 602 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 12/109 (11%)
Query: 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMD 281
HGTH +S G S G A P ++A D + D+ ++
Sbjct: 52 HGTHVASLIFGQP--CSSVEGIAPLCRGLNIP---------IFAEDRRGCSQLDLARAIN 100
Query: 282 QAIADGVDIMSLSLG-FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG 329
A+ G I+++S G QT + ++A A +N +++V AAGN+G
Sbjct: 101 LALEQGAHIINISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEG 149
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 17/76 (22%)
Query: 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH----RD 568
I+APG ++L A E+ SGTS AA VAG+AALL ++
Sbjct: 189 ILAPGENILGA----ALGGEVV---------RRSGTSFAAAIVAGIAALLLSLQLRRGAP 235
Query: 569 WSPAAIRSAIMTTAYP 584
P A+R A++ TA P
Sbjct: 236 PDPLAVRRALLETATP 251
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 30/133 (22%), Positives = 46/133 (34%), Gaps = 48/133 (36%)
Query: 247 TARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-------DGVDIMSLSLGFDQ 299
A IAP A++ +Y A V G A + ++S+S G +
Sbjct: 82 YAGAIAPGANITLY----------FAPGTVTNGPLLAFLAAVLDNPNLPSVISISYGEPE 131
Query: 300 T-------PYFNDVIAIASLSAIENGIVVVCAAGNDG----------------FPRSIHN 336
++ A A+ GI V+ A+G+ G FP S
Sbjct: 132 QSLPPAYAQRVCNLFAQAAA----QGITVLAASGDSGAGGCGGDGSGTGFSVSFPASS-- 185
Query: 337 GAPWITTVGAGTL 349
P++T VG TL
Sbjct: 186 --PYVTAVGGTTL 196
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 361 |
| >gnl|CDD|173816 cd07491, Peptidases_S8_7, Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 15/108 (13%)
Query: 268 TEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVI-----AIASLSAIENGIVVV 322
T +SAA + A A+ VDI+S+S + ++ I AI A++ GI++
Sbjct: 87 TPQSAAKAIEA----AVEKKVDIISMSWTIKKPEDNDNDINELENAIKE--ALDRGILLF 140
Query: 323 CAAGNDGFPRSIHNGAPW----ITTVGAGTLDRSFHATVTLDNGLTFK 366
C+A + G P I +GA D A V ++ + +
Sbjct: 141 CSASDQGAFTGDTYPPPAARDRIFRIGAADEDGGADAPVGDEDRVDYI 188
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 247 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 99.98 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.92 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.9 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.72 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 99.21 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 99.19 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.89 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 98.68 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.66 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 98.61 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.57 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 98.56 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 98.5 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 98.47 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.44 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 98.44 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 98.43 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 98.41 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 98.38 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 98.35 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.33 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 98.33 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 98.32 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 98.3 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 98.26 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 98.01 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 97.0 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.92 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 96.79 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 96.64 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 96.59 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.55 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 94.95 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 94.14 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 93.53 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 93.09 | |
| KOG4628 | 348 | consensus Predicted E3 ubiquitin ligase [Posttrans | 91.71 | |
| KOG3920 | 193 | consensus Uncharacterized conserved protein, conta | 91.23 | |
| cd04821 | 157 | PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) do | 90.11 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 89.03 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 83.3 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 83.15 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=440.44 Aligned_cols=303 Identities=56% Similarity=0.871 Sum_probs=257.0
Q ss_pred ccccccCCCCccCCCCCCC--CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceee
Q 047470 114 GKLFTTHSPNFLGLKPNSG--LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLI 191 (757)
Q Consensus 114 ~~~~~~~s~~~~g~~~~~~--~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~ 191 (757)
+++++++++.++++..... +|..+++|+||+|||||||||++||+|.+....+.+..|.+.|+.+..+....|++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 4678889999999987533 46679999999999999999999999999888999999999999998888888999999
Q ss_pred eeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCC-CC
Q 047470 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDT-EE 270 (757)
Q Consensus 192 g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~-~g 270 (757)
+.++|.++++...+ .....+..++.|..||||||||||||+...+....|...+.+.||||+|+|+.+|+++ . ..
T Consensus 81 g~~~~~~~~~~~~~-~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~---~~~~ 156 (307)
T cd04852 81 GARYFSDGYDAYGG-FNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCW---PDGG 156 (307)
T ss_pred EEEEcccchhhccC-cccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEec---CCCC
Confidence 99999876544322 1223445668899999999999999998766666666667789999999999999998 5 45
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccc
Q 047470 271 SAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTL 349 (757)
Q Consensus 271 ~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~ 349 (757)
+..+++++||++|++++++|||||||......+.+.+..++..+.++|++||+||||+| ...+.++.+||+++||+.+
T Consensus 157 ~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~- 235 (307)
T cd04852 157 CFGSDILAAIDQAIADGVDVISYSIGGGSPDPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST- 235 (307)
T ss_pred ccHHHHHHHHHHHHHcCCCEEEeCCCCCCCCcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc-
Confidence 88999999999999999999999999875445667888888899999999999999999 7777888889999998630
Q ss_pred cccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHc
Q 047470 350 DRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRA 429 (757)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~ 429 (757)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCC
Q 047470 430 GAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGIL 509 (757)
Q Consensus 430 Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~l 509 (757)
+
T Consensus 236 -------------------------------------------------------------------------------~ 236 (307)
T cd04852 236 -------------------------------------------------------------------------------L 236 (307)
T ss_pred -------------------------------------------------------------------------------C
Confidence 4
Q ss_pred CceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 510 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
||||+|||++|++++..... .........|..++|||||||+|||++|||+|++|+|+|.|||++|++||+
T Consensus 237 ~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 237 KPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 77999999999999875311 111222348999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-49 Score=435.34 Aligned_cols=297 Identities=21% Similarity=0.227 Sum_probs=208.9
Q ss_pred CccCCCCC--CCCCC--CCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCcee---eeeee
Q 047470 123 NFLGLKPN--SGLWP--SARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKL---IGARS 195 (757)
Q Consensus 123 ~~~g~~~~--~~~~~--~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv---~g~~~ 195 (757)
..|+++.. +.+|+ .+.+|+||+|||||||||++||||.++-.... ....|. ..++. +++.. +.+++
T Consensus 294 ~qWgLd~i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~~n~-~el~Gr----dgiDd--D~nG~vdd~~G~n 366 (639)
T PTZ00262 294 LQWGLDLTRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNIDVNV-KELHGR----KGIDD--DNNGNVDDEYGAN 366 (639)
T ss_pred cCcCcchhCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhccccc-ccccCc----ccccc--ccCCccccccccc
Confidence 34555543 34565 35689999999999999999999986421100 000000 00000 01000 11223
Q ss_pred ccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHH
Q 047470 196 FSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAAS 274 (757)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~ 274 (757)
|.+ ....+.|..||||||||||||...++ ..+.||||+|+|+++|+++ ..+ +..+
T Consensus 367 fVd-------------~~~~P~D~~GHGTHVAGIIAA~gnN~--------~Gi~GVAP~AkLi~vKVld---~~G~G~~s 422 (639)
T PTZ00262 367 FVN-------------NDGGPMDDNYHGTHVSGIISAIGNNN--------IGIVGVDKRSKLIICKALD---SHKLGRLG 422 (639)
T ss_pred ccC-------------CCCCCCCCCCcchHHHHHHhccccCC--------CceeeeecccccceEEEec---CCCCccHH
Confidence 322 11346789999999999999975332 2357999999999999998 555 7889
Q ss_pred HHHHHHHHHHhCCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc--------------c---
Q 047470 275 DVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH--------------N--- 336 (757)
Q Consensus 275 ~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~--------------~--- 336 (757)
++++||+||++.|++|||||||+.. +...+..++.+|.++|++||+||||++ .....+ .
T Consensus 423 dI~~AI~yA~~~GA~VINmSlG~~~---~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s 499 (639)
T PTZ00262 423 DMFKCFDYCISREAHMINGSFSFDE---YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILS 499 (639)
T ss_pred HHHHHHHHHHHCCCCEEEeccccCC---ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhh
Confidence 9999999999999999999999754 334567777799999999999999998 432111 0
Q ss_pred -CCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCC
Q 047470 337 -GAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSN 415 (757)
Q Consensus 337 -~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~ 415 (757)
..|++|+|||...+.
T Consensus 500 ~~~~nVIaVGAv~~d~---------------------------------------------------------------- 515 (639)
T PTZ00262 500 KKLRNVITVSNLIKDK---------------------------------------------------------------- 515 (639)
T ss_pred ccCCCEEEEeeccCCC----------------------------------------------------------------
Confidence 123344444321100
Q ss_pred CCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCcccc
Q 047470 416 RIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVAS 495 (757)
Q Consensus 416 ~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~ 495 (757)
.....++.
T Consensus 516 ------------------------------------------------------------------------~~~~s~s~ 523 (639)
T PTZ00262 516 ------------------------------------------------------------------------NNQYSLSP 523 (639)
T ss_pred ------------------------------------------------------------------------CCcccccc
Confidence 00112345
Q ss_pred ccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHH
Q 047470 496 FSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIR 575 (757)
Q Consensus 496 fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik 575 (757)
||++|.. ++||+|||++|+|+++++ .|..++|||||||||||+||||++++|+|+++||+
T Consensus 524 ~Snyg~~-------~VDIaAPG~dI~St~p~g-------------~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~ 583 (639)
T PTZ00262 524 NSFYSAK-------YCQLAAPGTNIYSTFPKN-------------SYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVI 583 (639)
T ss_pred cccCCCC-------cceEEeCCCCeeeccCCC-------------ceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHH
Confidence 6666632 349999999999998876 89999999999999999999999999999999999
Q ss_pred HHHHhcccccCCCCCccccCCCCCCCCCC-CccCccccCCCCcee
Q 047470 576 SAIMTTAYPVNFAENEIGVVPATPLDFGA-GHIDPNKAMDPGLIY 619 (757)
Q Consensus 576 ~~L~~TA~~~~~~~~~~~~~~~~~~~~G~-G~vd~~~Al~~~lv~ 619 (757)
++|++||.++... +..+|| |+||+++|++..+-+
T Consensus 584 ~iL~~TA~~l~~~----------~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 584 RILKESIVQLPSL----------KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred HHHHHhCccCCCC----------CCccccCcEEcHHHHHHHHHhc
Confidence 9999999877432 223343 899999999976644
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-48 Score=403.72 Aligned_cols=269 Identities=27% Similarity=0.320 Sum_probs=202.7
Q ss_pred CCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCC
Q 047470 137 ARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSA 216 (757)
Q Consensus 137 ~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~ 216 (757)
+++|+||+|+|||||||..||++.+...+ ++.+...+... ....
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~-----------------------~l~~~~~~~~~-------------~~~~ 44 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASG-----------------------DLPGNVNVLGD-------------LDGG 44 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCC-----------------------CCCcceeeccc-------------cCCC
Confidence 57999999999999999999965432111 11111111100 1235
Q ss_pred CCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCC
Q 047470 217 RDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLG 296 (757)
Q Consensus 217 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG 296 (757)
.|..+|||||||||+ ||||+|+|+.+|+.. ..+++++||+||+++|++|||||||
T Consensus 45 ~d~~gHGT~vAgii~------------------GvAP~a~l~~~~~~~-------~~~~i~~ai~~a~~~g~~Vin~S~g 99 (275)
T cd05562 45 SGGGDEGRAMLEIIH------------------DIAPGAELAFHTAGG-------GELDFAAAIRALAAAGADIIVDDIG 99 (275)
T ss_pred CCCCchHHHHHHHHh------------------ccCCCCEEEEEecCC-------CHHHHHHHHHHHHHcCCCEEEeccc
Confidence 678899999999995 899999999988654 3789999999999999999999999
Q ss_pred CCCCCC-ccCHHHHHHHHHHhC-CcEEEEecCCCC-C-CCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecC
Q 047470 297 FDQTPY-FNDVIAIASLSAIEN-GIVVVCAAGNDG-F-PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFP 372 (757)
Q Consensus 297 ~~~~~~-~~~~~~~a~~~a~~~-Gi~vV~AAGN~g-~-~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~ 372 (757)
....+. ....+..++.++.++ |++||+||||+| . ....++..|++|+|||...+.......
T Consensus 100 ~~~~~~~~~~~~~~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~~s--------------- 164 (275)
T cd05562 100 YLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAFGS--------------- 164 (275)
T ss_pred ccCCCcccCCHHHHHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccccc---------------
Confidence 865333 334677777788887 999999999999 3 334467789999999965432210000
Q ss_pred CCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccE
Q 047470 373 ESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPS 452 (757)
Q Consensus 373 ~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~ 452 (757)
|. +.
T Consensus 165 ---------------------~~----------------------------------~~--------------------- 168 (275)
T cd05562 165 ---------------------DP----------------------------------AP--------------------- 168 (275)
T ss_pred ---------------------cc----------------------------------cc---------------------
Confidence 00 00
Q ss_pred EEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCC-CeEecccCCCCcc
Q 047470 453 LILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGV-DVLAAVAPNIPFI 531 (757)
Q Consensus 453 ~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~ 531 (757)
.......+.|+++||+. ++++||||+|||+ ++.+.+.++
T Consensus 169 ----------------------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~~---- 208 (275)
T cd05562 169 ----------------------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDGD---- 208 (275)
T ss_pred ----------------------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcCC----
Confidence 00011345678889987 5789999999975 445554433
Q ss_pred ccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccc
Q 047470 532 EIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNK 611 (757)
Q Consensus 532 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~ 611 (757)
.|..++|||||||||||++|||+|++|+|++++||++|++||+++.. +..+..||||+||+.+
T Consensus 209 ---------~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~--------~g~d~~~G~G~vda~~ 271 (275)
T cd05562 209 ---------GPPNFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGE--------PGYDNASGSGLVDADR 271 (275)
T ss_pred ---------ceeecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCC--------CCCCCCcCcCcccHHH
Confidence 79999999999999999999999999999999999999999998742 3467799999999999
Q ss_pred cCC
Q 047470 612 AMD 614 (757)
Q Consensus 612 Al~ 614 (757)
|++
T Consensus 272 Av~ 274 (275)
T cd05562 272 AVA 274 (275)
T ss_pred Hhh
Confidence 986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=398.13 Aligned_cols=242 Identities=28% Similarity=0.409 Sum_probs=195.1
Q ss_pred CCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCC
Q 047470 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDF 213 (757)
Q Consensus 134 ~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~ 213 (757)
|+++++|+||+|||||||||.+||+|.+.. ...+|.+ .
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~~----------------------------~~~~~~~--------------~ 38 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNVK----------------------------ERTNWTN--------------E 38 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhccc----------------------------cccccCC--------------C
Confidence 899999999999999999999999997310 0011111 0
Q ss_pred CCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEE
Q 047470 214 DSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMS 292 (757)
Q Consensus 214 ~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn 292 (757)
....|..||||||||||+|+.. .+.||||+|+|+.+|++. +.+ +..++++++++||++++++|||
T Consensus 39 ~~~~d~~gHGT~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~---~~~~~~~~~~~~a~~~a~~~~~~Vin 104 (255)
T cd07479 39 KTLDDGLGHGTFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFT---NNQVSYTSWFLDAFNYAILTKIDVLN 104 (255)
T ss_pred CCCCCCCCcHHHHHHHHHccCC-----------CceeECCCCEEEEEEeec---CCCCchHHHHHHHHHhhhhcCCCEEE
Confidence 1245778999999999998731 247999999999999998 555 6677899999999999999999
Q ss_pred eCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC--cccCCCceEEeccccccccceeeEEeCCCcEEEEEe
Q 047470 293 LSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS--IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS 369 (757)
Q Consensus 293 ~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~--~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~ 369 (757)
||||... +....+..++.++.++|++||+||||+| ...+ .+...+++|+|||..
T Consensus 105 ~S~G~~~--~~~~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~--------------------- 161 (255)
T cd07479 105 LSIGGPD--FMDKPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGID--------------------- 161 (255)
T ss_pred eeccCCC--CCCcHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeec---------------------
Confidence 9999863 2334566666788899999999999999 4333 345557788887631
Q ss_pred ecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCcc
Q 047470 370 YFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYY 449 (757)
Q Consensus 370 l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~ 449 (757)
T Consensus 162 -------------------------------------------------------------------------------- 161 (255)
T cd07479 162 -------------------------------------------------------------------------------- 161 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCC----CCCCCCCceEEeCCCCeEeccc
Q 047470 450 IPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDP----ISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~----~~~~~lKPDI~APG~~I~sa~~ 525 (757)
..+.++.|||+|++. ...+++||||+|||.+|+++..
T Consensus 162 ---------------------------------------~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~ 202 (255)
T cd07479 162 ---------------------------------------FDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKL 202 (255)
T ss_pred ---------------------------------------cCCccccccCCCCCcccccCCCCCcCccEEecCCCeecccc
Confidence 123678999999752 1257889999999999998876
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC----CCCHHHHHHHHHhcccccC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR----DWSPAAIRSAIMTTAYPVN 586 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p----~~s~~~ik~~L~~TA~~~~ 586 (757)
.+ .|..++|||||||||||++|||+|++| .++|++||++|++||+++.
T Consensus 203 ~~-------------~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 203 KG-------------GCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred CC-------------CeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 54 788999999999999999999999999 7899999999999999874
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-47 Score=411.38 Aligned_cols=314 Identities=30% Similarity=0.391 Sum_probs=232.4
Q ss_pred CCCCCCC-CCCccEEEEEecCCccCCccccCCCCCCCCc-----cccccccCCCCCCCcccCceeeeeeeccchhhhccC
Q 047470 132 GLWPSAR-YGQGVIIGIIDTGIWPESESFHDKGMPPVPR-----RWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGI 205 (757)
Q Consensus 132 ~~~~~~~-~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~-----~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~ 205 (757)
.+|+++. +|+||+|+|||||||++||+|.+....+... .+...+.. -...+++.+++..++|.++...
T Consensus 1 ~~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--- 74 (346)
T cd07475 1 PLWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGI---GYGKYYNEKVPFAYNYADNNDD--- 74 (346)
T ss_pred ChhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccC---CCCcccccCCCeeEcCCCCCCc---
Confidence 3788887 9999999999999999999998754333211 11122211 1122467788888888764221
Q ss_pred CCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh
Q 047470 206 NVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA 285 (757)
Q Consensus 206 ~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~ 285 (757)
.....+..+|||||||||+|...+.. ....+.||||+|+|+.+|+++...........+++|++++++
T Consensus 75 -------~~~~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~ 142 (346)
T cd07475 75 -------ILDEDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVK 142 (346)
T ss_pred -------cCCCCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHH
Confidence 11145788999999999999864321 123468999999999999997311233778889999999999
Q ss_pred CCCcEEEeCCCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc----------------cCCCceEEeccc
Q 047470 286 DGVDIMSLSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH----------------NGAPWITTVGAG 347 (757)
Q Consensus 286 ~g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~----------------~~ap~~itVgas 347 (757)
.+++|||||||... .......+..++.++.++|++||+||||+| ...... ...+++|+||+.
T Consensus 143 ~g~~Vin~S~G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~ 222 (346)
T cd07475 143 LGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASA 222 (346)
T ss_pred cCCCEEEECCCcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeec
Confidence 99999999999976 224556777788889999999999999999 432211 122334444432
Q ss_pred cccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHH
Q 047470 348 TLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVD 427 (757)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~ 427 (757)
..
T Consensus 223 ~~------------------------------------------------------------------------------ 224 (346)
T cd07475 223 NK------------------------------------------------------------------------------ 224 (346)
T ss_pred cc------------------------------------------------------------------------------
Confidence 10
Q ss_pred HcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCC
Q 047470 428 RAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPG 507 (757)
Q Consensus 428 ~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~ 507 (757)
.......+.++.||+|||+. ++
T Consensus 225 --------------------------------------------------------~~~~~~~~~~~~~S~~G~~~--~~ 246 (346)
T cd07475 225 --------------------------------------------------------KVPNPNGGQMSGFSSWGPTP--DL 246 (346)
T ss_pred --------------------------------------------------------ccCCCCCCccCCCcCCCCCc--cc
Confidence 00012344688999999998 58
Q ss_pred CCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHh----CCCCCHHH----HHHHHH
Q 047470 508 ILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAI----HRDWSPAA----IRSAIM 579 (757)
Q Consensus 508 ~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~~s~~~----ik~~L~ 579 (757)
++||||+|||.+|+++...+ .|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|+
T Consensus 247 ~~~pdi~apG~~i~s~~~~~-------------~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~ 313 (346)
T cd07475 247 DLKPDITAPGGNIYSTVNDN-------------TYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLM 313 (346)
T ss_pred CcCCeEEeCCCCeEEecCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988765 7899999999999999999999998 78898876 788999
Q ss_pred hcccccCCCCCccccCCCCCCCCCCCccCccccCC
Q 047470 580 TTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMD 614 (757)
Q Consensus 580 ~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 614 (757)
+||.+....... ..++.+..+|+|+||+.+|++
T Consensus 314 ~ta~~~~~~~~~--~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 314 NTATPPLDSEDT--KTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred hcCCcccccCCC--CccCCccccCcchhcHHHhhC
Confidence 999953322111 556678899999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-47 Score=419.87 Aligned_cols=401 Identities=24% Similarity=0.288 Sum_probs=236.1
Q ss_pred CCCCccEEEEEecCCccCCccccC-CCCCCCCccccccccCCCCCCCcccCceeeeeeeccc-hhhhccCCCCCcCCCCC
Q 047470 138 RYGQGVIIGIIDTGIWPESESFHD-KGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSK-GLQAAGINVSKEYDFDS 215 (757)
Q Consensus 138 ~~G~Gv~VgVIDtGid~~Hp~f~~-~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~-~~~~~~~~~~~~~~~~~ 215 (757)
++|+||+|||||||||+.||+|.+ ++.+++...|++....+..-. ...+...+.+ ..+.... -..+.+..+
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~~~~------~~~~~~~~~~~~i~~~~~-~~~p~~~~~ 73 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG------GYYGGGEYTEEIINAALA-SDNPYDIVP 73 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCCCCc------cccCceEEeHHHHHHHHh-cCCccccCc
Confidence 479999999999999999999996 578899999998876543211 1122222221 1111100 011223345
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-----------CCHHHHHHHHHHHH
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-----------SAASDVLAGMDQAI 284 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-----------~~~~~i~~ai~~a~ 284 (757)
..|..||||||||||||+..++ ..+.||||+|+|+++|++. ..+ +..++++.||+|++
T Consensus 74 ~~D~~GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~---~~~~~~~~~~~~~~~~~~~i~~ai~~~~ 142 (455)
T cd07478 74 SRDENGHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQ---AKKYLREFYEDVPFYQETDIMLAIKYLY 142 (455)
T ss_pred CCCCCCchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeec---CCCcccccccccccCcHHHHHHHHHHHH
Confidence 6789999999999999986432 3357999999999999998 333 57889999999988
Q ss_pred hC-----CCcEEEeCCCCCC-CCCccCHHHHHHHHHHhC-CcEEEEecCCCC-CCCCcccC-CC------ceEEeccccc
Q 047470 285 AD-----GVDIMSLSLGFDQ-TPYFNDVIAIASLSAIEN-GIVVVCAAGNDG-FPRSIHNG-AP------WITTVGAGTL 349 (757)
Q Consensus 285 ~~-----g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g-~~~~~~~~-ap------~~itVgas~~ 349 (757)
+. .+.|||||||... .....+.++.++..+.++ |++||+||||+| ...+.... .+ --+.|+...
T Consensus 143 ~~a~~~~~p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~- 221 (455)
T cd07478 143 DKALELNKPLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGE- 221 (455)
T ss_pred HHHHHhCCCeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCC-
Confidence 74 4679999999875 344556777777777765 999999999999 44433321 11 012233211
Q ss_pred cccceeeEEeCCCcEEEEEeecC-CCCCC---------ceeeeEEccCCCCcccccC-CCCCCCCccceEEEEeCCCCCc
Q 047470 350 DRSFHATVTLDNGLTFKGISYFP-ESVYI---------TDAPLYYGKNDVNKSICHL-GSLNPDEVTGKVVFCDNSNRID 418 (757)
Q Consensus 350 ~~~~~~~~~~~~~~~~~g~~l~~-~~~~~---------~~~p~~~~~~~~~~~~c~~-~~~~~~~~~gkivl~~~g~~~~ 418 (757)
..+.-.+-......+.-.-..| ++... ..+.+.+... ..|.. ...++......|.+...
T Consensus 222 -~~~~~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t----~i~v~y~~~~~~~g~~~i~i~~~----- 291 (455)
T cd07478 222 -KGFNLEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGT----TVYVYYYLPEPYTGDQLIFIRFK----- 291 (455)
T ss_pred -cceEEEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCe----EEEEEEcCCCCCCCCeEEEEEcc-----
Confidence 1111000000000000000000 00000 0011111110 00000 00011111111221110
Q ss_pred hhHHHHHHHHcCCeEEEEeccCCC-CCCC-CccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeecc------C-cC
Q 047470 419 TYSQMEEVDRAGAYAAIFLTDTPD-IDSD-EYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELG------T-KP 489 (757)
Q Consensus 419 ~~~k~~~~~~~Ga~~g~i~~~~~~-~~~~-~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~------~-~~ 489 (757)
+ ...+ .+.|...... .... ..++|.-.+...+...+ +. ++..++..+..... . ..
T Consensus 292 ------~--~~~G-iW~i~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~----~~---~~~~tit~Pa~~~~vitVga~~~~ 355 (455)
T cd07478 292 ------N--IKPG-IWKIRLTGVSITDGRFDAWLPSRGLLSENTRFL----EP---DPYTTLTIPGTARSVITVGAYNQN 355 (455)
T ss_pred ------C--CCcc-ceEEEEEeccCCCceEEEEecCcCcCCCCCEee----cC---CCCceEecCCCCCCcEEEEEEeCC
Confidence 0 0111 2222222211 1111 11233222221111111 11 23445555433211 1 22
Q ss_pred CCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhC---
Q 047470 490 APHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH--- 566 (757)
Q Consensus 490 ~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~--- 566 (757)
.+.++.||||||+. ++++||||+|||++|+++.+.+ .|..++|||||||||||++|||+|++
T Consensus 356 ~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~~-------------~~~~~sGTS~Aap~vaG~aALl~~~~~~~ 420 (455)
T cd07478 356 NNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPGG-------------GYTTRSGTSVAAAIVAGACALLLQWGIVR 420 (455)
T ss_pred CCcccCccCCCcCC--CCCcCceEEecCCCEEEeecCC-------------cEEeeCcHHHHHHHHHHHHHHHHHhchhc
Confidence 34699999999998 6999999999999999999866 89999999999999999999999975
Q ss_pred ---CCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 047470 567 ---RDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAG 605 (757)
Q Consensus 567 ---p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G 605 (757)
|.|++++||++|++||+++.. ..+++++||||
T Consensus 421 ~~~p~~~~~~ik~~L~~tA~~~~~-------~~~pn~~~GyG 455 (455)
T cd07478 421 GNDPYLYGEKIKTYLIRGARRRPG-------DEYPNPEWGYG 455 (455)
T ss_pred cCCCCCCHHHHHHHHHHhCccCCC-------CCCCCCCCCCC
Confidence 557999999999999998852 34578899998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=398.57 Aligned_cols=285 Identities=31% Similarity=0.349 Sum_probs=187.9
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDF 219 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 219 (757)
|+||+|+|||||||.+||+|.++... .|... |+ .+ .++....++.. .....+.|.
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~~----~~~~~------~d--~~-~~~~~g~d~~~------------~~~~~~~D~ 55 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGNF----SWKLK------FD--YK-AYLLPGMDKWG------------GFYVIMYDF 55 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccCC----Ccccc------cC--cC-CCccCCcCCCC------------CccCCCCCc
Confidence 89999999999999999999753210 01000 00 00 01111111111 011236789
Q ss_pred CCCchhHHHhhcccCCCCCccccc-cCCceeeccCCceEEeeeccccCCCCC-CCHHHHHH-------HHHHH--HhCCC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGY-AKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLA-------GMDQA--IADGV 288 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~-~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~-------ai~~a--~~~g~ 288 (757)
+||||||||||||+.....+.+++ ....+.||||+|+|+++|++. ..+ .....+.. +++|+ .++++
T Consensus 56 ~gHGThvAGiiag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 132 (311)
T cd07497 56 FSHGTSCASVAAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALW---FGDVIYAWLWTAGFDPVDRKLSWIYTGGPRV 132 (311)
T ss_pred cccchhHHHHHhccCcccccccccccccceeeeCCCCEEEEEEEEe---cCCcchhhhhhhccchhhhhhhhhhccCCCc
Confidence 999999999999986433222221 123468999999999999997 333 22222222 34443 46899
Q ss_pred cEEEeCCCCCCCCC-----ccCHHHHHHHH-HHhCCcEEEEecCCCC-CCCC--cccCCCceEEeccccccccceeeEEe
Q 047470 289 DIMSLSLGFDQTPY-----FNDVIAIASLS-AIENGIVVVCAAGNDG-FPRS--IHNGAPWITTVGAGTLDRSFHATVTL 359 (757)
Q Consensus 289 dVIn~SlG~~~~~~-----~~~~~~~a~~~-a~~~Gi~vV~AAGN~g-~~~~--~~~~ap~~itVgas~~~~~~~~~~~~ 359 (757)
+|||||||...... ..+........ +.++|+++|+||||+| ...+ .+..++++|+|||++.....+.+.
T Consensus 133 ~VIN~S~G~~~~~~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~~-- 210 (311)
T cd07497 133 DVISNSWGISNFAYTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFYL-- 210 (311)
T ss_pred eEEEecCCcCCCCccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchhh--
Confidence 99999999864211 11223333322 2389999999999999 5443 455678999999974321100000
Q ss_pred CCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEecc
Q 047470 360 DNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTD 439 (757)
Q Consensus 360 ~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~ 439 (757)
.+.
T Consensus 211 ---------------------------------------------------------------------~~~-------- 213 (311)
T cd07497 211 ---------------------------------------------------------------------FGY-------- 213 (311)
T ss_pred ---------------------------------------------------------------------hcc--------
Confidence 000
Q ss_pred CCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCC
Q 047470 440 TPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVD 519 (757)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~ 519 (757)
.....+.++.||||||+. ++++||||+|||++
T Consensus 214 ----------------------------------------------~~~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~ 245 (311)
T cd07497 214 ----------------------------------------------LPGGSGDVVSWSSRGPSI--AGDPKPDLAAIGAF 245 (311)
T ss_pred ----------------------------------------------ccCCCCCccccccCCCCc--ccCCCCceeccCcc
Confidence 001234689999999998 69999999999999
Q ss_pred eEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC------CCCHHHHHHHHHhcc
Q 047470 520 VLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR------DWSPAAIRSAIMTTA 582 (757)
Q Consensus 520 I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p------~~s~~~ik~~L~~TA 582 (757)
|+++.+...... .......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 246 i~s~~~~~~~~~---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 246 AWAPGRVLDSGG---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eEeecccCCCCc---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 999876542100 011123799999999999999999999999986 589999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=396.72 Aligned_cols=291 Identities=31% Similarity=0.409 Sum_probs=225.9
Q ss_pred CCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccch-hhhccCCCCCc
Q 047470 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG-LQAAGINVSKE 210 (757)
Q Consensus 132 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~-~~~~~~~~~~~ 210 (757)
.+|+.+++|+||+|||||+|||++||+|.+.-.+ +.++.+.++|..+ +... ...
T Consensus 4 ~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~---------------------~~~~~~~~d~~~~~~~~~----~~~ 58 (312)
T cd07489 4 KLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP---------------------GCKVAGGYDFVGDDYDGT----NPP 58 (312)
T ss_pred hHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC---------------------CceeccccccCCcccccc----cCC
Confidence 4899999999999999999999999999863111 1123333333311 1100 111
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
.+...+.|..+|||||||||+|+..+ ..+.||||+|+|+.+|+++ ..+ .....+++++++|++++++
T Consensus 59 ~~~~~~~d~~gHGT~vAgiia~~~~~---------~~~~GiAp~a~i~~~~v~~---~~~~~~~~~~~~ai~~a~~~~~~ 126 (312)
T cd07489 59 VPDDDPMDCQGHGTHVAGIIAANPNA---------YGFTGVAPEATLGAYRVFG---CSGSTTEDTIIAAFLRAYEDGAD 126 (312)
T ss_pred CCCCCCCCCCCcHHHHHHHHhcCCCC---------CceEEECCCCEEEEEEeec---CCCCCCHHHHHHHHHHHHhcCCC
Confidence 23345667799999999999998543 2358999999999999998 555 6777889999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCC---CcccCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPR---SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~---~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
|||||||... .+..+.+...+.++.++|+++|+||||+| ... ..+...|++|+||+.
T Consensus 127 iIn~S~g~~~-~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~------------------ 187 (312)
T cd07489 127 VITASLGGPS-GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASV------------------ 187 (312)
T ss_pred EEEeCCCcCC-CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEe------------------
Confidence 9999999875 33446777777888999999999999999 322 223455677777752
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
T Consensus 188 -------------------------------------------------------------------------------- 187 (312)
T cd07489 188 -------------------------------------------------------------------------------- 187 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
-+.||++||+. +...||||+|||++++++++
T Consensus 188 -----------------------------------------------~~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~ 218 (312)
T cd07489 188 -----------------------------------------------DSYFSSWGPTN--ELYLKPDVAAPGGNILSTYP 218 (312)
T ss_pred -----------------------------------------------cCCccCCCCCC--CCCcCccEEcCCCCEEEeee
Confidence 05689999998 58899999999999999887
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhC-CCCCHHHHHHHHHhcccccCCCCCccc-cCCCCCCCCC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH-RDWSPAAIRSAIMTTAYPVNFAENEIG-VVPATPLDFG 603 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~~s~~~ik~~L~~TA~~~~~~~~~~~-~~~~~~~~~G 603 (757)
.... .|..++|||||||+|||++||++|++ |.+++.+||++|++||.++...+.... ....+...+|
T Consensus 219 ~~~~-----------~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G 287 (312)
T cd07489 219 LAGG-----------GYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQG 287 (312)
T ss_pred CCCC-----------ceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcC
Confidence 7522 58999999999999999999999999 999999999999999998864432111 1135667999
Q ss_pred CCccCccccCCCCce
Q 047470 604 AGHIDPNKAMDPGLI 618 (757)
Q Consensus 604 ~G~vd~~~Al~~~lv 618 (757)
||+||+.+|++..-.
T Consensus 288 ~G~vn~~~a~~~~~~ 302 (312)
T cd07489 288 AGLVNAYKALYATTT 302 (312)
T ss_pred cceeeHHHHhcCCcc
Confidence 999999999996443
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=382.82 Aligned_cols=247 Identities=27% Similarity=0.344 Sum_probs=200.7
Q ss_pred CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCC
Q 047470 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212 (757)
Q Consensus 133 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~ 212 (757)
+|+.+++|+||+|||||+|||.+||+|.+....+. ..+.. .
T Consensus 2 lw~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~~--------------------------~~~~~-------------~ 42 (267)
T cd07476 2 LFAFGGGDPRITIAILDGPVDRTHPCFRGANLTPL--------------------------FTYAA-------------A 42 (267)
T ss_pred ceeccCCCCCeEEEEeCCCcCCCChhhCCCccccc--------------------------cCccc-------------c
Confidence 79999999999999999999999999986421110 00000 0
Q ss_pred CCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEE
Q 047470 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMS 292 (757)
Q Consensus 213 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn 292 (757)
.....|..+|||||||||+|+.. ..+.||||+|+|+.+|++... ..+.+..++++||+||+++|++|||
T Consensus 43 ~~~~~~~~gHGT~VAgii~g~~~----------~~~~GvAp~a~i~~~~v~~~~-~~~~~~~~i~~ai~~a~~~g~~VIN 111 (267)
T cd07476 43 ACQDGGASAHGTHVASLIFGQPC----------SSVEGIAPLCRGLNIPIFAED-RRGCSQLDLARAINLALEQGAHIIN 111 (267)
T ss_pred CCCCCCCCCcHHHHHHHHhcCCC----------CCceeECcCCeEEEEEEEeCC-CCCCCHHHHHHHHHHHHHCCCCEEE
Confidence 12245678999999999998742 124799999999999998721 1224578899999999999999999
Q ss_pred eCCCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEee
Q 047470 293 LSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISY 370 (757)
Q Consensus 293 ~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l 370 (757)
||||... .......+..++..+.++|++||+||||+| ....++...|++|+||+...
T Consensus 112 ~S~G~~~~~~~~~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~--------------------- 170 (267)
T cd07476 112 ISGGRLTQTGEADPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDD--------------------- 170 (267)
T ss_pred ecCCcCCCCCCCCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecC---------------------
Confidence 9999765 333456778888889999999999999999 76677778899999997411
Q ss_pred cCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccc
Q 047470 371 FPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYI 450 (757)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~ 450 (757)
T Consensus 171 -------------------------------------------------------------------------------- 170 (267)
T cd07476 171 -------------------------------------------------------------------------------- 170 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCc
Q 047470 451 PSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPF 530 (757)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 530 (757)
.+.++.||++|+.. .||||+|||.+|+++.+.+
T Consensus 171 ---------------------------------------~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~~--- 203 (267)
T cd07476 171 ---------------------------------------DGLPLKFSNWGADY-----RKKGILAPGENILGAALGG--- 203 (267)
T ss_pred ---------------------------------------CCCeeeecCCCCCC-----CCceEEecCCCceeecCCC---
Confidence 12457899999864 3789999999999998775
Q ss_pred cccCCCccccceEeeccccchhhhHhHHHHHHHHhCCC----CCHHHHHHHHHhcccccCC
Q 047470 531 IEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRD----WSPAAIRSAIMTTAYPVNF 587 (757)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~----~s~~~ik~~L~~TA~~~~~ 587 (757)
.|..++|||||||||||++|||++++|. ++|++||++|++||+++..
T Consensus 204 ----------~~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~ 254 (267)
T cd07476 204 ----------EVVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDP 254 (267)
T ss_pred ----------CeEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCC
Confidence 7999999999999999999999999887 8999999999999999864
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-44 Score=372.94 Aligned_cols=236 Identities=31% Similarity=0.388 Sum_probs=190.7
Q ss_pred cEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCC
Q 047470 143 VIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGH 222 (757)
Q Consensus 143 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 222 (757)
|+|||||||||.+||+|.+... ..+++.. ....|..+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~~---------------------------~~~~~~~---------------~~~~~~~~H 38 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVVI---------------------------ARLFFAG---------------PGAPAPSAH 38 (239)
T ss_pred CEEEEEeCCCCCCCcccccCcc---------------------------ccccCCC---------------CCCCCCCCC
Confidence 7899999999999999975311 1111100 124567899
Q ss_pred chhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCC-CCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC
Q 047470 223 GTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDT-EESAASDVLAGMDQAIADGVDIMSLSLGFDQTP 301 (757)
Q Consensus 223 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~-~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 301 (757)
||||||||+|+.... .|+||+|+|+.+|++..... ..++..++++||+||+++|++|||||||...
T Consensus 39 GT~vAgiia~~~~~~-----------~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-- 105 (239)
T cd05561 39 GTAVASLLAGAGAQR-----------PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-- 105 (239)
T ss_pred HHHHHHHHhCCCCCC-----------cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--
Confidence 999999999874321 59999999999999983211 1267788999999999999999999999753
Q ss_pred CccCHHHHHHHHHHhCCcEEEEecCCCC-C-CCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCce
Q 047470 302 YFNDVIAIASLSAIENGIVVVCAAGNDG-F-PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITD 379 (757)
Q Consensus 302 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~-~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 379 (757)
...++.++.++.++|++||+||||+| . ...+++..|++|+||+...
T Consensus 106 --~~~l~~ai~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~------------------------------ 153 (239)
T cd05561 106 --NALLAAAVAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDA------------------------------ 153 (239)
T ss_pred --CHHHHHHHHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecC------------------------------
Confidence 34566777789999999999999999 4 3456666788888886311
Q ss_pred eeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhh
Q 047470 380 APLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSA 459 (757)
Q Consensus 380 ~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~ 459 (757)
T Consensus 154 -------------------------------------------------------------------------------- 153 (239)
T cd05561 154 -------------------------------------------------------------------------------- 153 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccc
Q 047470 460 GTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELV 539 (757)
Q Consensus 460 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 539 (757)
.+.++.||++|+.. ||+|||++|+++.+.+
T Consensus 154 ------------------------------~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~~------------ 183 (239)
T cd05561 154 ------------------------------RGRLYREANRGAHV--------DFAAPGVDVWVAAPGG------------ 183 (239)
T ss_pred ------------------------------CCCccccCCCCCcc--------eEEccccceecccCCC------------
Confidence 22567899999987 9999999999987665
Q ss_pred cceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 047470 540 TDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAG 605 (757)
Q Consensus 540 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G 605 (757)
.|..++|||||||||||++|||+|++| ++++|||++|++||+++. .+..+..||||
T Consensus 184 -~~~~~sGTS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g--------~~~~d~~~G~G 239 (239)
T cd05561 184 -GYRYVSGTSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLG--------PPGRDPVFGYG 239 (239)
T ss_pred -CEEEeCCHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccC--------CCCcCCCcCCC
Confidence 799999999999999999999999999 999999999999999884 34577899998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=380.34 Aligned_cols=288 Identities=42% Similarity=0.575 Sum_probs=215.5
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccC-CC-CCcCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGI-NV-SKEYDFDSAR 217 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~-~~-~~~~~~~~~~ 217 (757)
|+||+|||||+|||++||+|.+.. ..+.++...++|......... .. ..........
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPG---------------------FPNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAG 59 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCC---------------------CCCCceeeeeECccCCCCcccccccccccccCCCC
Confidence 899999999999999999998531 123445555555432110000 00 0000112245
Q ss_pred CCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCC
Q 047470 218 DFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLG 296 (757)
Q Consensus 218 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 296 (757)
|..+|||||||+|+|...+ ...+.|+||+|+|+.+|+++ ..+ +...++++||+|+++++++|||||||
T Consensus 60 ~~~~HGT~vAgiiag~~~n--------~~~~~Giap~a~i~~~~~~~---~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g 128 (295)
T cd07474 60 DATGHGTHVAGIIAGNGVN--------VGTIKGVAPKADLYAYKVLG---PGGSGTTDVIIAAIEQAVDDGMDVINLSLG 128 (295)
T ss_pred CCCCcHHHHHHHHhcCCCc--------cCceEeECCCCeEEEEEeec---CCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 6899999999999988543 22357999999999999997 444 78889999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCc--ccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCC
Q 047470 297 FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSI--HNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPE 373 (757)
Q Consensus 297 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~--~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~ 373 (757)
... ....+.+..++..+.++|+++|+||||+| ..... +...+++|+||++.....
T Consensus 129 ~~~-~~~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------------- 186 (295)
T cd07474 129 SSV-NGPDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------------- 186 (295)
T ss_pred CCC-CCCCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------------
Confidence 865 22456777788899999999999999999 44433 456789999998531000
Q ss_pred CCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEE
Q 047470 374 SVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSL 453 (757)
Q Consensus 374 ~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~ 453 (757)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCC-CCCCCCCCCCCceEEeCCCCeEecccCCCCccc
Q 047470 454 ILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSR-GPDPISPGILKPDIVAPGVDVLAAVAPNIPFIE 532 (757)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~-Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~ 532 (757)
........|+++ |++. ...+||||+|||++|++++....
T Consensus 187 ----------------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~~---- 226 (295)
T cd07474 187 ----------------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGSG---- 226 (295)
T ss_pred ----------------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCCC----
Confidence 001123444554 4544 58899999999999999987631
Q ss_pred cCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCcccc
Q 047470 533 IGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612 (757)
Q Consensus 533 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~A 612 (757)
..|..++|||||||+|||++|||+|++|+|++++||++|++||++....+. ...++..+|+|+||+.+|
T Consensus 227 -------~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~----~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 227 -------TGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDG----VVYPVSRQGAGRVDALRA 295 (295)
T ss_pred -------CceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCC----CcCChhccCcceeccccC
Confidence 178999999999999999999999999999999999999999999876542 223457999999999987
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-44 Score=378.60 Aligned_cols=268 Identities=25% Similarity=0.354 Sum_probs=186.4
Q ss_pred CccEEEEEecCCccCCccccCCCCC-CCCccccccccCCCCCCCcccCceeeeeeeccchhhhc----cCC--CC----C
Q 047470 141 QGVIIGIIDTGIWPESESFHDKGMP-PVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAA----GIN--VS----K 209 (757)
Q Consensus 141 ~Gv~VgVIDtGid~~Hp~f~~~~~~-~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~----~~~--~~----~ 209 (757)
|+|+|||||||||++||+|.+.... +.....++....+.+|.. + +++++|...+... ..+ .. .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~~~~n~~e~~~~~~d~d~ng~~d-----d-~~g~~f~~~~~~~~~~~~~~~~~~~~~~g 74 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGKLWINKKEIPGNGIDDDNNGYID-----D-VNGWNFLGQYDPRRIVGDDPYDLTEKGYG 74 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhhhhcCCcccCCCCccCCCCCccc-----c-ccCeeccCCcccccccccCcccccccccc
Confidence 6899999999999999999864211 000111122222222221 1 2334443211100 000 00 0
Q ss_pred cCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCc
Q 047470 210 EYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 210 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~d 289 (757)
+.+...+.+..+|||||||||+|...++. .+.||||+|+|+.+|++. .......++++||+||+++|++
T Consensus 75 ~~~~~~~~~~~gHGT~VAGiIaa~~~n~~--------g~~GvAp~a~i~~~k~~~---~g~~~~~~i~~Ai~~a~~~g~~ 143 (291)
T cd07483 75 NNDVNGPISDADHGTHVAGIIAAVRDNGI--------GIDGVADNVKIMPLRIVP---NGDERDKDIANAIRYAVDNGAK 143 (291)
T ss_pred ccccCCCCCCCCcHHHHHHHHhCcCCCCC--------ceEEECCCCEEEEEEEec---CCCcCHHHHHHHHHHHHHCCCc
Confidence 11223355789999999999999754322 247999999999999986 4456778999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCc---cc--------CCCceEEeccccccccceeeE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSI---HN--------GAPWITTVGAGTLDRSFHATV 357 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~---~~--------~ap~~itVgas~~~~~~~~~~ 357 (757)
|||||||..... ..+.+..++..+.++|+++|+||||+| ..... +. ..+++|+||+....
T Consensus 144 IiN~S~G~~~~~-~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~------- 215 (291)
T cd07483 144 VINMSFGKSFSP-NKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK------- 215 (291)
T ss_pred EEEeCCCCCCCC-ccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc-------
Confidence 999999975422 234566677788999999999999999 43211 11 11334444432110
Q ss_pred EeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEe
Q 047470 358 TLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFL 437 (757)
Q Consensus 358 ~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~ 437 (757)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCC
Q 047470 438 TDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPG 517 (757)
Q Consensus 438 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 517 (757)
.....++.||++|+. +|||.|||
T Consensus 216 --------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG 238 (291)
T cd07483 216 --------------------------------------------------YENNLVANFSNYGKK-------NVDVFAPG 238 (291)
T ss_pred --------------------------------------------------CCcccccccCCCCCC-------ceEEEeCC
Confidence 011247889999984 34999999
Q ss_pred CCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 518 VDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 518 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.+|+++.+.+ .|..++|||||||||||++|||+|++|+|++.|||++|++||.
T Consensus 239 ~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 239 ERIYSTTPDN-------------EYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCeEeccCcC-------------CeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 9999998765 7999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=369.66 Aligned_cols=245 Identities=31% Similarity=0.400 Sum_probs=194.1
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
||+||||||||+++||+|.... ..++.++.+.++|.+... ....|..+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~--------------------~~~~~~i~~~~~~~~~~~------------~~~~~~~~ 48 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKH--------------------LFKNLRILGEYDFVDNSN------------NTNYTDDD 48 (261)
T ss_pred CCEEEEEccCCCccCcchhhhc--------------------cccCCceeeeecCccCCC------------CCCCCCCC
Confidence 7999999999999999995211 013456777777754210 11357889
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTP 301 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 301 (757)
|||||||+|+|+.. +.+.||||+|+|+.+|+............+++.|++||.+.+++|||||||.....
T Consensus 49 HGT~vagiia~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~ 118 (261)
T cd07493 49 HGTAVLSTMAGYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFD 118 (261)
T ss_pred chhhhheeeeeCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCC
Confidence 99999999998742 23589999999999998763212224566789999999999999999999987521
Q ss_pred Cc------------cCHHHHHHHHHHhCCcEEEEecCCCC-C---CCCcccCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 302 YF------------NDVIAIASLSAIENGIVVVCAAGNDG-F---PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 302 ~~------------~~~~~~a~~~a~~~Gi~vV~AAGN~g-~---~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
.. ...+..++..+.++|++||+||||+| . ....+...|++|+||+...
T Consensus 119 ~~~~~~~~~~~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~---------------- 182 (261)
T cd07493 119 NPTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDA---------------- 182 (261)
T ss_pred CcccccccccccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEecc----------------
Confidence 11 23566777788999999999999999 5 3445666788888887311
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
T Consensus 183 -------------------------------------------------------------------------------- 182 (261)
T cd07493 183 -------------------------------------------------------------------------------- 182 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
.+.++.||++||+. ++++||||+|||.++++...
T Consensus 183 --------------------------------------------~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~ 216 (261)
T cd07493 183 --------------------------------------------NGNKASFSSIGPTA--DGRLKPDVMALGTGIYVING 216 (261)
T ss_pred --------------------------------------------CCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcC
Confidence 12568899999987 68999999999999998554
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.+ .|..++|||||||+|||++|||++++|+|++.|||++|++||+
T Consensus 217 ~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 217 DG-------------NITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred CC-------------cEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 43 7899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-43 Score=369.11 Aligned_cols=246 Identities=34% Similarity=0.386 Sum_probs=192.3
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDF 219 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 219 (757)
|+||+|||||+|||++||+|.+. |++.... .+...+.+.+. ......+.|.
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~--------~~~~~~~-----------~~~~~~~~~d~----------~~~~~~~~d~ 51 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK--------YRGWGGG-----------SADHDYNWFDP----------VGNTPLPYDD 51 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc--------ccccCCC-----------CcccccccccC----------CCCCCCCCCC
Confidence 89999999999999999999864 1110000 00000111110 1112345678
Q ss_pred CCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh------------CC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA------------DG 287 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~------------~g 287 (757)
.+|||||||||+|..... ...||||+|+|+.+|+++ ..++...+++++++++++ .+
T Consensus 52 ~~HGT~vagii~g~~~~~---------~~~GvAp~a~i~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 119 (264)
T cd07481 52 NGHGTHTMGTMVGNDGDG---------QQIGVAPGARWIACRALD---RNGGNDADYLRCAQWMLAPTDSAGNPADPDLA 119 (264)
T ss_pred CCchhhhhhheeecCCCC---------CceEECCCCeEEEEEeec---CCCCcHHHHHHHHHHHHhcccccccccccccC
Confidence 899999999999874321 126999999999999998 666888899999999875 78
Q ss_pred CcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC---cccCCCceEEeccccccccceeeEEeCCCc
Q 047470 288 VDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS---IHNGAPWITTVGAGTLDRSFHATVTLDNGL 363 (757)
Q Consensus 288 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~---~~~~ap~~itVgas~~~~~~~~~~~~~~~~ 363 (757)
++|||||||.... ....+..++..+.++|++||+||||++ .... .+...|++|+||+...
T Consensus 120 ~~Iin~S~G~~~~--~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~-------------- 183 (264)
T cd07481 120 PDVINNSWGGPSG--DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDR-------------- 183 (264)
T ss_pred CeEEEeCCCcCCC--CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCC--------------
Confidence 9999999998752 245556666688899999999999999 4332 4556678888886311
Q ss_pred EEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCC
Q 047470 364 TFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDI 443 (757)
Q Consensus 364 ~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~ 443 (757)
T Consensus 184 -------------------------------------------------------------------------------- 183 (264)
T cd07481 184 -------------------------------------------------------------------------------- 183 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEec
Q 047470 444 DSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAA 523 (757)
Q Consensus 444 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 523 (757)
.+.++.||++||.. .+++||||+|||.+|+++
T Consensus 184 ----------------------------------------------~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~ 215 (264)
T cd07481 184 ----------------------------------------------NDVLADFSSRGPST--YGRIKPDISAPGVNIRSA 215 (264)
T ss_pred ----------------------------------------------CCCCccccCCCCCC--CCCcCceEEECCCCeEEe
Confidence 23578999999998 489999999999999999
Q ss_pred ccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCC--CCHHHHHHHHHhccc
Q 047470 524 VAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRD--WSPAAIRSAIMTTAY 583 (757)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~--~s~~~ik~~L~~TA~ 583 (757)
.+.+ .|..++|||||||+|||++|||+|++|+ ++++|||++|++||+
T Consensus 216 ~~~~-------------~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 216 VPGG-------------GYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred cCCC-------------ceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 8875 7899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=369.69 Aligned_cols=328 Identities=27% Similarity=0.381 Sum_probs=255.3
Q ss_pred CCceEEEEeCCCCCCCccccHHHHHHHhhcccCCC---CC------------CCCcEEEEe--c-ceeeEEEEEcCHHHH
Q 047470 35 DHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYP---AD------------RNNMLLYSY--N-HVIQGFSARLTPSQL 96 (757)
Q Consensus 35 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~---~~------------~~~~~~~~~--~-~~~~g~s~~l~~~~~ 96 (757)
.+++|||.|++....+....+.+|+++........ .+ .-..+.+.| . .+|+|..-..+.+-+
T Consensus 79 ~~~~YiV~f~~~~~q~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v 158 (501)
T KOG1153|consen 79 LPSRYIVVFKPDASQQKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESV 158 (501)
T ss_pred cccceEEEeCCCccHHHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhcccccccccee
Confidence 57899999997776666777778877765433221 00 000133333 3 378888888899999
Q ss_pred HHHHcCCCeEEEEecccccccc-----cCCCCccCCCCC---C----CCC----CCCCCCCccEEEEEecCCccCCcccc
Q 047470 97 SEIEKSPAHLATYPESFGKLFT-----THSPNFLGLKPN---S----GLW----PSARYGQGVIIGIIDTGIWPESESFH 160 (757)
Q Consensus 97 ~~L~~~p~V~~V~~~~~~~~~~-----~~s~~~~g~~~~---~----~~~----~~~~~G~Gv~VgVIDtGid~~Hp~f~ 160 (757)
..++++|.++.++++..++... .+....||+-.. . ..| ..-..|+||...|+||||+.+||+|.
T Consensus 159 ~~i~~~p~~~~ve~~~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFe 238 (501)
T KOG1153|consen 159 CSIRSDPLIKAVEKDSVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFE 238 (501)
T ss_pred eeeccCcceeecccccccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccc
Confidence 9999999999999998887644 344455665443 1 111 12348999999999999999999999
Q ss_pred CCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCcc
Q 047470 161 DKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSH 240 (757)
Q Consensus 161 ~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~ 240 (757)
++ +.| |.| +.+ -....|++||||||||+|+++.
T Consensus 239 gR------a~w-Ga~-----i~~-----------------------------~~~~~D~nGHGTH~AG~I~sKt------ 271 (501)
T KOG1153|consen 239 GR------AIW-GAT-----IPP-----------------------------KDGDEDCNGHGTHVAGLIGSKT------ 271 (501)
T ss_pred cc------eec-ccc-----cCC-----------------------------CCcccccCCCcceeeeeeeccc------
Confidence 75 233 111 110 1225689999999999999984
Q ss_pred ccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC---------CCcEEEeCCCCCCCCCccCHHHHH
Q 047470 241 FGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD---------GVDIMSLSLGFDQTPYFNDVIAIA 310 (757)
Q Consensus 241 ~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~---------g~dVIn~SlG~~~~~~~~~~~~~a 310 (757)
.|||.+++|+++||++ +.| +..+++++++|++++. +..|.|||+|+..+ -+++.|
T Consensus 272 --------~GvAK~s~lvaVKVl~---~dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~S----~aLn~A 336 (501)
T KOG1153|consen 272 --------FGVAKNSNLVAVKVLR---SDGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFRS----AALNMA 336 (501)
T ss_pred --------cccccccceEEEEEec---cCCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCccc----HHHHHH
Confidence 5999999999999999 888 8999999999999986 46899999999753 467777
Q ss_pred HHHHHhCCcEEEEecCCCC--CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCC
Q 047470 311 SLSAIENGIVVVCAAGNDG--FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKND 388 (757)
Q Consensus 311 ~~~a~~~Gi~vV~AAGN~g--~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~ 388 (757)
+.+|.+.|+++++||||+. ...+.++.+..+|||||++.
T Consensus 337 V~~A~~~Gi~fa~AAGNe~eDAC~~SPass~~aITVGAst~--------------------------------------- 377 (501)
T KOG1153|consen 337 VNAASERGIHFAVAAGNEHEDACNSSPASSKKAITVGASTK--------------------------------------- 377 (501)
T ss_pred HHHHhhcCeEEEEcCCCcchhhhccCcccccccEEeccccc---------------------------------------
Confidence 7799999999999999999 45566777889999998643
Q ss_pred CCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHh
Q 047470 389 VNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVT 468 (757)
Q Consensus 389 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 468 (757)
T Consensus 378 -------------------------------------------------------------------------------- 377 (501)
T KOG1153|consen 378 -------------------------------------------------------------------------------- 377 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccc
Q 047470 469 GKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGT 548 (757)
Q Consensus 469 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 548 (757)
.+.+|.|||||+++ ||.|||.+|+|+|.+... ...+.|||
T Consensus 378 ---------------------~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~~-----------at~ilSGT 417 (501)
T KOG1153|consen 378 ---------------------NDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSNN-----------ATAILSGT 417 (501)
T ss_pred ---------------------ccchhhhcCcccee--------eeecCchhhhhhhhcCcc-----------chheeecc
Confidence 23689999999999 999999999999998743 66799999
Q ss_pred cchhhhHhHHHHHHHHhCCC---------CCHHHHHHHHHhccc
Q 047470 549 SMAAPHVAGVAALLKAIHRD---------WSPAAIRSAIMTTAY 583 (757)
Q Consensus 549 SmAaP~VAG~aALl~~~~p~---------~s~~~ik~~L~~TA~ 583 (757)
|||+|||||++|.+++.+|. .+|.++|..+..-..
T Consensus 418 SMasPhvaG~aAy~ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 418 SMASPHVAGLAAYFLSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred cccCcchhhhHHHhhhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 99999999999999999883 378888887776554
|
|
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=373.83 Aligned_cols=220 Identities=27% Similarity=0.336 Sum_probs=163.2
Q ss_pred CCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC--CCHHHHHHHHHHHHhCCCcEEEeC
Q 047470 217 RDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE--SAASDVLAGMDQAIADGVDIMSLS 294 (757)
Q Consensus 217 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~S 294 (757)
.|+.+|||||||||||+..+ ...+.||||+|+|+++|+++. ..+ +...++++||++|++.|++|||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~--------~~~~~GVAP~A~I~svkv~d~--~~gs~~t~~~l~~ai~~ai~~gadVIN~S 251 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPE--------EPERNGVAPGAQIVSIKIGDT--RLGSMETGTALVRAMIAAIETKCDLINMS 251 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCC--------CCceEEecCCCeEEEEEeccC--CCCCccchHHHHHHHHHHHHcCCCEEEec
Confidence 46789999999999998432 223579999999999999872 122 334679999999999999999999
Q ss_pred CCCCCCCCccCHHHHHHH-HHHhCCcEEEEecCCCC-CCCCccc---CCCceEEeccccccccceeeEEeCCCcEEEEEe
Q 047470 295 LGFDQTPYFNDVIAIASL-SAIENGIVVVCAAGNDG-FPRSIHN---GAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS 369 (757)
Q Consensus 295 lG~~~~~~~~~~~~~a~~-~a~~~Gi~vV~AAGN~g-~~~~~~~---~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~ 369 (757)
||..........+..++. .+.++|+++|+||||+| ...++.. .++++|+|||..........
T Consensus 252 lG~~~~~~~~~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~------------- 318 (412)
T cd04857 252 YGEATHWPNSGRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE------------- 318 (412)
T ss_pred CCcCCCCccchHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc-------------
Confidence 998752111122333333 34579999999999999 6555443 35789999985221100000
Q ss_pred ecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCcc
Q 047470 370 YFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYY 449 (757)
Q Consensus 370 l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~ 449 (757)
| +
T Consensus 319 --------------y---------------------------------------------~------------------- 320 (412)
T cd04857 319 --------------Y---------------------------------------------S------------------- 320 (412)
T ss_pred --------------c---------------------------------------------c-------------------
Confidence 0 0
Q ss_pred ccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCC
Q 047470 450 IPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIP 529 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 529 (757)
......+.++.||||||+. ++++||||+|||+.|.+.-...
T Consensus 321 -----------------------------------~~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-- 361 (412)
T cd04857 321 -----------------------------------LREKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-- 361 (412)
T ss_pred -----------------------------------cccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC--
Confidence 0001134689999999998 7999999999999998752111
Q ss_pred ccccCCCccccceEeeccccchhhhHhHHHHHHHH----hCCCCCHHHHHHHHHhccccc
Q 047470 530 FIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKA----IHRDWSPAAIRSAIMTTAYPV 585 (757)
Q Consensus 530 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~s~~~ik~~L~~TA~~~ 585 (757)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 ---------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 ---------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ---------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 12789999999999999999999975 478999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=365.17 Aligned_cols=262 Identities=29% Similarity=0.341 Sum_probs=197.7
Q ss_pred CCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcC
Q 047470 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEY 211 (757)
Q Consensus 132 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~ 211 (757)
.+|..+++|+||+|+|||||||++||+|.+..... .+. .+...+.... ....
T Consensus 1 ~aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~-------------~~~------------~~~~~~~~~~---~~~~ 52 (273)
T cd07485 1 AAWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGD-------------GYD------------PAVNGYNFVP---NVGD 52 (273)
T ss_pred CccccccCCCCcEEEEEeCCCCCCChhhccCCCCC-------------Ccc------------cccCCccccc---ccCC
Confidence 37999999999999999999999999999641100 000 0000000000 0001
Q ss_pred CCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcE
Q 047470 212 DFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDI 290 (757)
Q Consensus 212 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dV 290 (757)
......|..||||||||||+|+..+.....|.+ .+.|+||+|+|+.+|++. ..+ ....+++++|++|++.|++|
T Consensus 53 ~~~~~~~~~gHGT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~---~~~~~~~~~~~~ai~~a~~~g~~V 127 (273)
T cd07485 53 IDNDVSVGGGHGTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFA---GRYYVGDDAVAAAIVYAADNGAVI 127 (273)
T ss_pred cCCCCCCCCCCHHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEEC---CCCCccHHHHHHHHHHHHHcCCcE
Confidence 123356778999999999999754332222221 345799999999999998 444 77888999999999999999
Q ss_pred EEeCCCCCCCCCccCHHHHHHHHHHhC-------CcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCC
Q 047470 291 MSLSLGFDQTPYFNDVIAIASLSAIEN-------GIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNG 362 (757)
Q Consensus 291 In~SlG~~~~~~~~~~~~~a~~~a~~~-------Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~ 362 (757)
||||||......+...+..++..+.++ |++||+||||++ .....++..|++|+||+.+.
T Consensus 128 in~S~g~~~~~~~~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~------------- 194 (273)
T cd07485 128 LQNSWGGTGGGIYSPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDT------------- 194 (273)
T ss_pred EEecCCCCCccccCHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccC-------------
Confidence 999999875333455666677788877 999999999999 65555777788999987421
Q ss_pred cEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 363 LTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 363 ~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
T Consensus 195 -------------------------------------------------------------------------------- 194 (273)
T cd07485 195 -------------------------------------------------------------------------------- 194 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCC-CeE
Q 047470 443 IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGV-DVL 521 (757)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~-~I~ 521 (757)
.+.++.||++|+.. ||+|||+ .|+
T Consensus 195 -----------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~~i~ 219 (273)
T cd07485 195 -----------------------------------------------NDNKASFSNYGRWV--------DIAAPGVGTIL 219 (273)
T ss_pred -----------------------------------------------CCCcCccccCCCce--------EEEeCCCCccc
Confidence 12567899999987 9999999 888
Q ss_pred ecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCC-CCHHHHHHHHHhc
Q 047470 522 AAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRD-WSPAAIRSAIMTT 581 (757)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~-~s~~~ik~~L~~T 581 (757)
++.+.... .....|..++|||||||+|||++|||+|++|. ++|+|||++|++|
T Consensus 220 ~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 220 STVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred cccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 88765411 11237899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=359.87 Aligned_cols=255 Identities=33% Similarity=0.491 Sum_probs=200.9
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDF 219 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 219 (757)
|+||+|+|||+||+++||+|.+.... .+.+... ........|.
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~---------------------------~~~~~~~----------~~~~~~~~d~ 43 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR---------------------------FADFVNT----------VNGRTTPYDD 43 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc---------------------------ccccccc----------ccCCCCCCCC
Confidence 89999999999999999999864211 0011000 0112345677
Q ss_pred CCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC----CCcEEEeC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD----GVDIMSLS 294 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~S 294 (757)
.+|||||||+|+|+..+. ...+.|+||+|+|+.+|+++ ..+ ...+++++||+|+++. +++|||||
T Consensus 44 ~~HGT~vAgiiag~~~~~-------~~~~~Giap~a~i~~~~v~~---~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S 113 (264)
T cd07487 44 NGHGTHVAGIIAGSGRAS-------NGKYKGVAPGANLVGVKVLD---DSGSGSESDIIAGIDWVVENNEKYNIRVVNLS 113 (264)
T ss_pred CCchHHHHHHHhcCCccc-------CCceEEECCCCeEEEEEeec---CCCCccHHHHHHHHHHHHhhccccCceEEEec
Confidence 899999999999985432 22358999999999999998 555 6788999999999998 99999999
Q ss_pred CCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCC--CcccCCCceEEeccccccccceeeEEeCCCcEEEEEee
Q 047470 295 LGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPR--SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISY 370 (757)
Q Consensus 295 lG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~--~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l 370 (757)
||... .....+.+..++.++.++|++||+||||++ ... ..+...+++|+||+...+..
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------ 175 (264)
T cd07487 114 LGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------ 175 (264)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC------------------
Confidence 99876 244667888888899999999999999999 554 55666789999998533211
Q ss_pred cCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccc
Q 047470 371 FPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYI 450 (757)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~ 450 (757)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCc
Q 047470 451 PSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPF 530 (757)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 530 (757)
....++.||++||+. ++++||||+|||++|++..+.....
T Consensus 176 --------------------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~ 215 (264)
T cd07487 176 --------------------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP 215 (264)
T ss_pred --------------------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccccc
Confidence 002468899999998 6899999999999999986543111
Q ss_pred cccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 531 IEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.......|..++|||||||+|||++|||+|++|.+++.+||++|++||+
T Consensus 216 ----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 216 ----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred ----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 1122237899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=354.03 Aligned_cols=231 Identities=37% Similarity=0.494 Sum_probs=191.6
Q ss_pred CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCC
Q 047470 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212 (757)
Q Consensus 133 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~ 212 (757)
+|..+++|+||+|+|||+||+++||+|.++ +...+.|.+.
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~---------------------------~~~~~~~~~~------------- 56 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR---------------------------AIWGADFVGG------------- 56 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC---------------------------eeeeeecCCC-------------
Confidence 677789999999999999999999999753 1222222211
Q ss_pred CCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC-----
Q 047470 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD----- 286 (757)
Q Consensus 213 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~----- 286 (757)
....|..+|||||||||+++. .||||+|+|+.+|+++ ..+ ...+++++++++++++
T Consensus 57 -~~~~d~~~HGT~vAgiia~~~--------------~GvAp~a~i~~~~i~~---~~~~~~~~~~~~ai~~~~~~~~~~~ 118 (255)
T cd04077 57 -DPDSDCNGHGTHVAGTVGGKT--------------YGVAKKANLVAVKVLD---CNGSGTLSGIIAGLEWVANDATKRG 118 (255)
T ss_pred -CCCCCCCccHHHHHHHHHccc--------------cCcCCCCeEEEEEEeC---CCCCcCHHHHHHHHHHHHhcccccC
Confidence 115678899999999999863 5999999999999998 554 6788999999999987
Q ss_pred CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCCcE
Q 047470 287 GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLT 364 (757)
Q Consensus 287 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~ 364 (757)
+++|||||||... ...+..++..+.++|+++|+||||+| .. ...+...|++|+||+...
T Consensus 119 ~~~iin~S~g~~~----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~--------------- 179 (255)
T cd04077 119 KPAVANMSLGGGA----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDS--------------- 179 (255)
T ss_pred CCeEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCC---------------
Confidence 4899999999864 45566677788999999999999999 43 455667789999987422
Q ss_pred EEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCC
Q 047470 365 FKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDID 444 (757)
Q Consensus 365 ~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~ 444 (757)
T Consensus 180 -------------------------------------------------------------------------------- 179 (255)
T cd04077 180 -------------------------------------------------------------------------------- 179 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecc
Q 047470 445 SDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAV 524 (757)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 524 (757)
.+.++.||++||.. ||+|||.+|.++.
T Consensus 180 ---------------------------------------------~~~~~~~S~~g~~~--------~i~apG~~i~~~~ 206 (255)
T cd04077 180 ---------------------------------------------DDARASFSNYGSCV--------DIFAPGVDILSAW 206 (255)
T ss_pred ---------------------------------------------CCCccCcccCCCCC--------cEEeCCCCeEecc
Confidence 12468899999987 9999999999987
Q ss_pred cCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccc
Q 047470 525 APNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYP 584 (757)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~ 584 (757)
.... ..|..++|||||||+|||++|||+|++|++++++||++|++||++
T Consensus 207 ~~~~-----------~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 207 IGSD-----------TATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred cCCC-----------CcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 7421 278999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=357.06 Aligned_cols=249 Identities=31% Similarity=0.374 Sum_probs=182.0
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|+++++|+||+|+||||||+..|| |...++. + +. .+..
T Consensus 11 ~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~---------------~~----~~~~------------ 51 (298)
T cd07494 11 TRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V---------------RV----VLAP------------ 51 (298)
T ss_pred hHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c---------------ee----ecCC------------
Confidence 359999999999999999999999998 6543110 0 00 0000
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcE
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDI 290 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dV 290 (757)
.......|+.||||||||++. ||||+|+|+.+|+++ . ..+++++||+||++++++|
T Consensus 52 ~~~~~~~D~~gHGT~vag~i~------------------GvAP~a~i~~vkv~~---~---~~~~~~~ai~~a~~~g~dV 107 (298)
T cd07494 52 GATDPACDENGHGTGESANLF------------------AIAPGAQFIGVKLGG---P---DLVNSVGAFKKAISLSPDI 107 (298)
T ss_pred CCCCCCCCCCCcchheeecee------------------EeCCCCeEEEEEccC---C---CcHHHHHHHHHHHhcCCCE
Confidence 011235678899999998753 999999999999987 3 5677999999999999999
Q ss_pred EEeCCCCCCC-C---------CccCHHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCceEEeccccccccceeeEEeC
Q 047470 291 MSLSLGFDQT-P---------YFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVTLD 360 (757)
Q Consensus 291 In~SlG~~~~-~---------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~ap~~itVgas~~~~~~~~~~~~~ 360 (757)
||||||.... + .....+..++..|.++|++||+||||++ ..+++..|++|+||++..+..-
T Consensus 108 In~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~--~~~Pa~~p~viaVga~~~~~~g------- 178 (298)
T cd07494 108 ISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGG--WSFPAQHPEVIAAGGVFVDEDG------- 178 (298)
T ss_pred EEeecccCCCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCC--CCcCCCCCCEEEEEeEeccCCC-------
Confidence 9999998641 1 1234577788888999999999999998 2357888999999986432110
Q ss_pred CCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccC
Q 047470 361 NGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDT 440 (757)
Q Consensus 361 ~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~ 440 (757)
.
T Consensus 179 ----------------------------------------------------------------------~--------- 179 (298)
T cd07494 179 ----------------------------------------------------------------------A--------- 179 (298)
T ss_pred ----------------------------------------------------------------------c---------
Confidence 0
Q ss_pred CCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCcccccc--CCCCCCCCCCCCCceE-----
Q 047470 441 PDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFS--SRGPDPISPGILKPDI----- 513 (757)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fS--s~Gp~~~~~~~lKPDI----- 513 (757)
....++ ++.... .+++.|||+
T Consensus 180 ---------------------------------------------------~~~~~~~~~~~s~~-~~g~~~pd~~~~~g 207 (298)
T cd07494 180 ---------------------------------------------------RRASSYASGFRSKI-YPGRQVPDVCGLVG 207 (298)
T ss_pred ---------------------------------------------------ccccccccCccccc-CCCCccCccccccC
Confidence 001111 111111 246677877
Q ss_pred -----------EeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 047470 514 -----------VAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582 (757)
Q Consensus 514 -----------~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA 582 (757)
+|||..|.++...... .......|..++|||||||||||++|||+|++|.|+++|||.+|++||
T Consensus 208 ~~~~~~~~~~~~APG~~i~~~~~~~~~-----~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta 282 (298)
T cd07494 208 MLPHAAYLMLPVPPGSQLDRSCAAFPD-----GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTA 282 (298)
T ss_pred cCCcccccccccCCCcceeccccCCCC-----CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 3799998765432100 001123799999999999999999999999999999999999999999
Q ss_pred cccCC
Q 047470 583 YPVNF 587 (757)
Q Consensus 583 ~~~~~ 587 (757)
+++..
T Consensus 283 ~~~~~ 287 (298)
T cd07494 283 RDVTK 287 (298)
T ss_pred cccCC
Confidence 98754
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=348.89 Aligned_cols=252 Identities=36% Similarity=0.440 Sum_probs=185.8
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
||+|||||+|||++||+|.+.- ...++|..+ .........|..+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~---------------------------~~~~~~~~~---------~~~~~~~~~d~~~ 44 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV---------------------------AQWADFDEN---------RRISATEVFDAGG 44 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc---------------------------CCceeccCC---------CCCCCCCCCCCCC
Confidence 7999999999999999997531 111122111 0011233567789
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTP 301 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~ 301 (757)
|||||||||+|+.. ++...||||+|+|+.+|++. ..++..++++++|+|+++++++|||||||.....
T Consensus 45 HGT~vAgiia~~~~---------~~~~~GvAp~a~i~~~~v~~---~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 112 (254)
T cd07490 45 HGTHVSGTIGGGGA---------KGVYIGVAPEADLLHGKVLD---DGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS 112 (254)
T ss_pred cHHHHHHHHhcCCC---------CCCEEEECCCCEEEEEEEec---CCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC
Confidence 99999999999853 22247999999999999998 5557889999999999999999999999987522
Q ss_pred CccCHHHHHHHHHHh-CCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCce
Q 047470 302 YFNDVIAIASLSAIE-NGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITD 379 (757)
Q Consensus 302 ~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 379 (757)
.+.+..++....+ +|++||+||||++ .....+...+++|+||+.+.+........
T Consensus 113 --~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~~s~--------------------- 169 (254)
T cd07490 113 --EDPLEEAVEALSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAWFSS--------------------- 169 (254)
T ss_pred --CcHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccCccC---------------------
Confidence 4555555545554 6999999999999 76677778899999998644321000000
Q ss_pred eeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhh
Q 047470 380 APLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSA 459 (757)
Q Consensus 380 ~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~ 459 (757)
.|
T Consensus 170 -------------------------------------------------~g----------------------------- 171 (254)
T cd07490 170 -------------------------------------------------FG----------------------------- 171 (254)
T ss_pred -------------------------------------------------Cc-----------------------------
Confidence 00
Q ss_pred HHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccc
Q 047470 460 GTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELV 539 (757)
Q Consensus 460 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~ 539 (757)
.......+.+|... ....|||++|||.+|+++..... ..
T Consensus 172 -------------------------------~~~~~~~~~~~~~~-~~~~~~d~~apG~~i~~~~~~~~---------~~ 210 (254)
T cd07490 172 -------------------------------SSGASLVSAPDSPP-DEYTKPDVAAPGVDVYSARQGAN---------GD 210 (254)
T ss_pred -------------------------------ccccccccCCCCCc-cCCcCceEEeccCCeEccccCCC---------CC
Confidence 01222233344432 45689999999999999652211 11
Q ss_pred cceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 540 TDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 540 ~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
..|..++|||||||+|||++|||+|++|++++.+||++|++||+
T Consensus 211 ~~~~~~~GTS~AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 211 GQYTRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred CCeeecccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 27999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=359.41 Aligned_cols=262 Identities=25% Similarity=0.205 Sum_probs=182.6
Q ss_pred cEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCC
Q 047470 143 VIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGH 222 (757)
Q Consensus 143 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 222 (757)
.+|||||||||.+||+|.+.- .....+.. ......|..||
T Consensus 1 p~VaviDtGi~~~hp~l~~~~---------------------------~~~~~~~~-------------~~~~~~d~~gH 40 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL---------------------------AEDDLDSD-------------EPGWTADDLGH 40 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh---------------------------cccccccc-------------CCCCcCCCCCC
Confidence 379999999999999998421 11111110 00115688999
Q ss_pred chhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-----CCHHHHHHHHHHHHhCC---CcEEEeC
Q 047470 223 GTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-----SAASDVLAGMDQAIADG---VDIMSLS 294 (757)
Q Consensus 223 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-----~~~~~i~~ai~~a~~~g---~dVIn~S 294 (757)
||||||||++.... .....|+||+|+|+.+||+. ..| ....++++||+|+++.+ ++|||||
T Consensus 41 GT~vAgiia~~~~~--------~~~~~gvap~~~l~~~kv~~---~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~S 109 (291)
T cd04847 41 GTAVAGLALYGDLT--------LPGNGLPRPGCRLESVRVLP---PNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLS 109 (291)
T ss_pred hHHHHHHHHcCccc--------CCCCCCcccceEEEEEEEcC---CCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEe
Confidence 99999999976432 12246999999999999998 432 56778999999999853 4999999
Q ss_pred CCCCCCCC--ccCHHHHHHH-HHHhCCcEEEEecCCCC-CCCC------------cccCCCceEEeccccccccceeeEE
Q 047470 295 LGFDQTPY--FNDVIAIASL-SAIENGIVVVCAAGNDG-FPRS------------IHNGAPWITTVGAGTLDRSFHATVT 358 (757)
Q Consensus 295 lG~~~~~~--~~~~~~~a~~-~a~~~Gi~vV~AAGN~g-~~~~------------~~~~ap~~itVgas~~~~~~~~~~~ 358 (757)
||...... ....+..++. .+.++|++||+||||++ .... .+..++++|+|||...+......-.
T Consensus 110 lG~~~~~~~~~~~~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~s~ 189 (291)
T cd04847 110 LGSPLPIDDGRPSSWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDRAR 189 (291)
T ss_pred cCCCCCccCCCCCcHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCccc
Confidence 99976221 1123444443 35689999999999999 4432 2345678999998644322100000
Q ss_pred eCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEec
Q 047470 359 LDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLT 438 (757)
Q Consensus 359 ~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~ 438 (757)
.|.
T Consensus 190 ----------------------------------------------------------------------~~~------- 192 (291)
T cd04847 190 ----------------------------------------------------------------------YSA------- 192 (291)
T ss_pred ----------------------------------------------------------------------ccc-------
Confidence 000
Q ss_pred cCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCC
Q 047470 439 DTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGV 518 (757)
Q Consensus 439 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 518 (757)
......+.|||+||.. ++.+||||+|||+
T Consensus 193 -------------------------------------------------~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~ 221 (291)
T cd04847 193 -------------------------------------------------VGPAPAGATTSSGPGS--PGPIKPDVVAFGG 221 (291)
T ss_pred -------------------------------------------------cccccCCCccccCCCC--CCCcCCcEEeeCC
Confidence 0011234499999998 6999999999999
Q ss_pred CeEecccCCCCc-----cccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 519 DVLAAVAPNIPF-----IEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 519 ~I~sa~~~~~~~-----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
+|.+..+..... ...........|..++|||||||+|||++|||++++|+++|++||++|++||+
T Consensus 222 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 222 NLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred ceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 998865432100 00001112247999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=349.19 Aligned_cols=239 Identities=35% Similarity=0.461 Sum_probs=198.0
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+ +|+||+|+|||+||+++||+|... ++...+++.++
T Consensus 19 ~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~--------------------------~~~~~~~~~~~----------- 60 (260)
T cd07484 19 PKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV--------------------------KFVLGYDFVDN----------- 60 (260)
T ss_pred HHHHhhc-CCCCCEEEEEeCCCCCCCcccccC--------------------------CcccceeccCC-----------
Confidence 4589988 999999999999999999998532 22222333221
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|..+|||||||||++...+. ..+.|+||+|+|+.+|+++ ..+ +...+++++|+++++.+++
T Consensus 61 --~~~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~---~~~~~~~~~~~~ai~~a~~~~~~ 127 (260)
T cd07484 61 --DSDAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLD---ANGSGSLADIANGIRYAADKGAK 127 (260)
T ss_pred --CCCCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEEC---CCCCcCHHHHHHHHHHHHHCCCe
Confidence 1225678899999999999874322 2357999999999999998 544 7788999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|||||||... ....+..++..+.++|++||+||||+| ....+++..+++|+||+.+.
T Consensus 128 iin~S~g~~~---~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~------------------- 185 (260)
T cd07484 128 VINLSLGGGL---GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQ------------------- 185 (260)
T ss_pred EEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCC-------------------
Confidence 9999999864 345666677788899999999999999 76788888899999987422
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 186 -------------------------------------------------------------------------------- 185 (260)
T cd07484 186 -------------------------------------------------------------------------------- 185 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++|+.. |++|||++|+++.+..
T Consensus 186 -----------------------------------------~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~~- 215 (260)
T cd07484 186 -----------------------------------------DDKRASFSNYGKWV--------DVSAPGGGILSTTPDG- 215 (260)
T ss_pred -----------------------------------------CCCcCCcCCCCCCc--------eEEeCCCCcEeecCCC-
Confidence 12467899999877 9999999999987764
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccccc
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPV 585 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~ 585 (757)
.|..++|||||||+|||++||+++++| +++.+||++|++||+++
T Consensus 216 ------------~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 216 ------------DYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ------------CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 799999999999999999999999999 99999999999999875
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=352.56 Aligned_cols=206 Identities=33% Similarity=0.385 Sum_probs=165.3
Q ss_pred CCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHH----------
Q 047470 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAI---------- 284 (757)
Q Consensus 215 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~---------- 284 (757)
...+..+|||||||||+|...++ ..+.||||+|+|+.+|+++ ..+...+++++|++|++
T Consensus 66 ~~~~~~~HGT~vAgiiaa~~~~~--------~~~~GvAp~a~i~~~~v~~---~~~~~~~~i~~a~~~a~~~~~~~~~~~ 134 (285)
T cd07496 66 GVSPSSWHGTHVAGTIAAVTNNG--------VGVAGVAWGARILPVRVLG---KCGGTLSDIVDGMRWAAGLPVPGVPVN 134 (285)
T ss_pred CCCCCCCCHHHHHHHHhCcCCCC--------CCceeecCCCeEEEEEEec---CCCCcHHHHHHHHHHHhccCcCCCccc
Confidence 35567899999999999985422 2247999999999999998 66668899999999998
Q ss_pred hCCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCC
Q 047470 285 ADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNG 362 (757)
Q Consensus 285 ~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~ 362 (757)
.++++|||||||..... ...+..++..+.++|++||+||||++ .. ...+...+++|+||+.+.
T Consensus 135 ~~~~~Iin~S~G~~~~~--~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------- 199 (285)
T cd07496 135 PNPAKVINLSLGGDGAC--SATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDL------------- 199 (285)
T ss_pred CCCCeEEEeCCCCCCCC--CHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCC-------------
Confidence 45789999999987521 45677777788999999999999999 54 556677788999987421
Q ss_pred cEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 363 LTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 363 ~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
T Consensus 200 -------------------------------------------------------------------------------- 199 (285)
T cd07496 200 -------------------------------------------------------------------------------- 199 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEe
Q 047470 443 IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLA 522 (757)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 522 (757)
.+.++.||++|+.. ||+|||++|.+
T Consensus 200 -----------------------------------------------~~~~~~~S~~g~~v--------di~apG~~i~~ 224 (285)
T cd07496 200 -----------------------------------------------RGQRASYSNYGPAV--------DVSAPGGDCAS 224 (285)
T ss_pred -----------------------------------------------CCCcccccCCCCCC--------CEEeCCCCccc
Confidence 22578899999987 99999999998
Q ss_pred cccCCCCcc--ccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047470 523 AVAPNIPFI--EIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581 (757)
Q Consensus 523 a~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~T 581 (757)
+........ ..........|..++|||||||+|||++||++|++|+|++++||++|++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 225 DVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 876542110 00111223478999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=353.30 Aligned_cols=276 Identities=32% Similarity=0.352 Sum_probs=198.0
Q ss_pred CCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCC
Q 047470 136 SARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDS 215 (757)
Q Consensus 136 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~ 215 (757)
++++|+||+|||||+|||++||+|.+... .+.. ..++++.....+.+ .
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~------------~~~~----~~~~~~~~~~~~~~----------------~ 49 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNF------------NKTN----LFHRKIVRYDSLSD----------------T 49 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCc------------CcCc----cCcccEEEeeccCC----------------C
Confidence 58899999999999999999999976321 0001 12334443333221 1
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC--CCHHHHHHHHHHHHhCCCcEEEe
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE--SAASDVLAGMDQAIADGVDIMSL 293 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g--~~~~~i~~ai~~a~~~g~dVIn~ 293 (757)
..|..+|||||||||+|+..+... ...+.|+||+|+|+.+|+++ ..+ ....++..+++++.+.+++||||
T Consensus 50 ~~d~~~HGT~vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vin~ 121 (293)
T cd04842 50 KDDVDGHGTHVAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGD---TSGNLSSPPDLNKLFSPMYDAGARISSN 121 (293)
T ss_pred CCCCCCCcchhheeeccCCcCCCc-----ccccccccccCeEEEEEeec---cCccccCCccHHHHHHHHHHhCCEEEec
Confidence 227899999999999998644321 11358999999999999988 443 56677889999999999999999
Q ss_pred CCCCCCCCCccCHHHHHHHHHH-h-CCcEEEEecCCCC-CCC---CcccCCCceEEeccccccccceeeEEeCCCcEEEE
Q 047470 294 SLGFDQTPYFNDVIAIASLSAI-E-NGIVVVCAAGNDG-FPR---SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKG 367 (757)
Q Consensus 294 SlG~~~~~~~~~~~~~a~~~a~-~-~Gi~vV~AAGN~g-~~~---~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g 367 (757)
|||...... ......++.++. + +|++||+||||++ ... ..+...+++|+||+.+.+......
T Consensus 122 S~G~~~~~~-~~~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~~~----------- 189 (293)
T cd04842 122 SWGSPVNNG-YTLLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSNGE----------- 189 (293)
T ss_pred cCCCCCccc-cchHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccccc-----------
Confidence 999876321 223333333333 3 8999999999999 443 566778999999986543221000
Q ss_pred EeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCC
Q 047470 368 ISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDE 447 (757)
Q Consensus 368 ~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~ 447 (757)
.|..
T Consensus 190 -------------------------~~~~--------------------------------------------------- 193 (293)
T cd04842 190 -------------------------GGLG--------------------------------------------------- 193 (293)
T ss_pred -------------------------cccc---------------------------------------------------
Confidence 0000
Q ss_pred ccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCC
Q 047470 448 YYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPN 527 (757)
Q Consensus 448 ~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 527 (757)
.......++.||++||+. ++++||||+|||++|+++.+..
T Consensus 194 --------------------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~ 233 (293)
T cd04842 194 --------------------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGG 233 (293)
T ss_pred --------------------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCC
Confidence 011234689999999998 6899999999999999997553
Q ss_pred CCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC--------CCCHHHHHHHHHhccc
Q 047470 528 IPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR--------DWSPAAIRSAIMTTAY 583 (757)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p--------~~s~~~ik~~L~~TA~ 583 (757)
.. ........|..++|||||||+|||++|||+|++| .+++.++|++|++||+
T Consensus 234 ~~----~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 234 GG----IGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred CC----CCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 10 0111223789999999999999999999999854 5667799999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=350.73 Aligned_cols=264 Identities=31% Similarity=0.415 Sum_probs=181.8
Q ss_pred CCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCC
Q 047470 135 PSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFD 214 (757)
Q Consensus 135 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~ 214 (757)
..+++|+||+|||||+|||.+||+|.+... ...+|.+. .
T Consensus 2 ~~~~tG~gv~VaVlDsGv~~~hp~l~~~~~---------------------------~~~~~~~~--------------~ 40 (297)
T cd07480 2 TSPFTGAGVRVAVLDTGIDLTHPAFAGRDI---------------------------TTKSFVGG--------------E 40 (297)
T ss_pred CCCCCCCCCEEEEEcCCCCCCChhhcCCcc---------------------------cCcccCCC--------------C
Confidence 457899999999999999999999985311 11112111 1
Q ss_pred CCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeC
Q 047470 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLS 294 (757)
Q Consensus 215 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~S 294 (757)
...|..||||||||||+|+..+ +...||||+|+|+.+|++.. ...+...++++||+||++.+++|||||
T Consensus 41 ~~~d~~gHGT~VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~--~~~~~~~~i~~ai~~a~~~g~~Vin~S 109 (297)
T cd07480 41 DVQDGHGHGTHCAGTIFGRDVP---------GPRYGVARGAEIALIGKVLG--DGGGGDGGILAGIQWAVANGADVISMS 109 (297)
T ss_pred CCCCCCCcHHHHHHHHhcccCC---------CcccccCCCCEEEEEEEEeC--CCCCcHHHHHHHHHHHHHcCCCEEEec
Confidence 2467889999999999987543 22369999999999999872 233677789999999999999999999
Q ss_pred CCCCCCC----------CccCHHHHHHHHH---------------HhCCcEEEEecCCCC-CCCCccc-----CCCceEE
Q 047470 295 LGFDQTP----------YFNDVIAIASLSA---------------IENGIVVVCAAGNDG-FPRSIHN-----GAPWITT 343 (757)
Q Consensus 295 lG~~~~~----------~~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~g-~~~~~~~-----~ap~~it 343 (757)
||..... .....++.....+ .++|++||+||||++ ....... ..+..++
T Consensus 110 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~ 189 (297)
T cd07480 110 LGADFPGLVDQGWPPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMG 189 (297)
T ss_pred cCCCCcccccccCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccE
Confidence 9985411 1112222222233 689999999999998 4322111 0111222
Q ss_pred eccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHH
Q 047470 344 VGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQM 423 (757)
Q Consensus 344 Vgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~ 423 (757)
|++.
T Consensus 190 V~~V---------------------------------------------------------------------------- 193 (297)
T cd07480 190 VAAV---------------------------------------------------------------------------- 193 (297)
T ss_pred EEEE----------------------------------------------------------------------------
Confidence 2210
Q ss_pred HHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCC
Q 047470 424 EEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDP 503 (757)
Q Consensus 424 ~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 503 (757)
+ ..+....|+++.+.
T Consensus 194 ---------------~-------------------------------------------------~~~~~~~~~~~~~~- 208 (297)
T cd07480 194 ---------------G-------------------------------------------------ALGRTGNFSAVANF- 208 (297)
T ss_pred ---------------C-------------------------------------------------CCCCCCCccccCCC-
Confidence 0 01122233333332
Q ss_pred CCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 504 ISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 504 ~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
...||||+|||.+|+++.+.+ .|..++|||||||+|||++||++|++|.+++.+++.+|+....
T Consensus 209 ---~~~~~dv~ApG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~ 272 (297)
T cd07480 209 ---SNGEVDIAAPGVDIVSAAPGG-------------GYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLT 272 (297)
T ss_pred ---CCCceEEEeCCCCeEeecCCC-------------cEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHh
Confidence 245789999999999988765 8999999999999999999999999999998888888774322
Q ss_pred ccCCCCCccccCCCCCCCCCCCccCcc
Q 047470 584 PVNFAENEIGVVPATPLDFGAGHIDPN 610 (757)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~G~G~vd~~ 610 (757)
....... ........+|+|++++.
T Consensus 273 ~~~~~~~---~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 273 AARTTQF---APGLDLPDRGVGLGLAP 296 (297)
T ss_pred hcccCCC---CCCCChhhcCCceeecC
Confidence 2111100 22346668999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=338.82 Aligned_cols=238 Identities=30% Similarity=0.352 Sum_probs=185.9
Q ss_pred cEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCC
Q 047470 143 VIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGH 222 (757)
Q Consensus 143 v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 222 (757)
|+|||||+|||++||+|.+.. ++...+.+.. +.....|..+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~-------------------------~~~~~~~~~~-------------~~~~~~~~~~H 42 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP-------------------------KLVPGWNFVS-------------NNDPTSDIDGH 42 (242)
T ss_pred CEEEEecCCCCCCChhhccCc-------------------------CccCCccccC-------------CCCCCCCCCCC
Confidence 689999999999999998520 0111111111 01135678999
Q ss_pred chhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC-CCCHHHHHHHHHHHHhCCCcEEEeCCCCCC-C
Q 047470 223 GTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE-ESAASDVLAGMDQAIADGVDIMSLSLGFDQ-T 300 (757)
Q Consensus 223 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~-g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~-~ 300 (757)
||||||||+|+..+ ...+.|+||+|+|+.+|++. .. .+...++.++++++++.+++|||||||... .
T Consensus 43 GT~vAgiiag~~~~--------~~~~~Gvap~a~i~~~~~~~---~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~ 111 (242)
T cd07498 43 GTACAGVAAAVGNN--------GLGVAGVAPGAKLMPVRIAD---SLGYAYWSDIAQAITWAADNGADVISNSWGGSDST 111 (242)
T ss_pred HHHHHHHHHhccCC--------CceeEeECCCCEEEEEEEEC---CCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCC
Confidence 99999999997532 22357999999999999998 44 367889999999999999999999999876 2
Q ss_pred CCccCHHHHHHHHHHh-CCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCc
Q 047470 301 PYFNDVIAIASLSAIE-NGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYIT 378 (757)
Q Consensus 301 ~~~~~~~~~a~~~a~~-~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 378 (757)
......+..++..+.+ +|+++|+||||+| .....++..+++|+||+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~----------------------------- 162 (242)
T cd07498 112 ESISSAIDNAATYGRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDS----------------------------- 162 (242)
T ss_pred chHHHHHHHHHHHHhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCC-----------------------------
Confidence 3345667777777888 9999999999999 65556778899999997422
Q ss_pred eeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechh
Q 047470 379 DAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTS 458 (757)
Q Consensus 379 ~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~ 458 (757)
T Consensus 163 -------------------------------------------------------------------------------- 162 (242)
T cd07498 163 -------------------------------------------------------------------------------- 162 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCcc
Q 047470 459 AGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYEL 538 (757)
Q Consensus 459 ~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~ 538 (757)
.+.+++||++||.. |++|||+++.......... .+..
T Consensus 163 -------------------------------~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~ 199 (242)
T cd07498 163 -------------------------------NDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYP 199 (242)
T ss_pred -------------------------------CCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCC
Confidence 12468899999987 9999999998875442111 1112
Q ss_pred ccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047470 539 VTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581 (757)
Q Consensus 539 ~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~T 581 (757)
...|..++|||||||+|||++|||+|++|+|+++|||++|++|
T Consensus 200 ~~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 200 GGGYGSFSGTSFASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred CCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 2378999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=337.39 Aligned_cols=248 Identities=31% Similarity=0.429 Sum_probs=187.0
Q ss_pred CccEEEEEecCCccCCccccCCCCCCCCcccccc---ccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCC
Q 047470 141 QGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGR---CENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSAR 217 (757)
Q Consensus 141 ~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~---~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (757)
+||+|||||||||++||+|.+.. |... +..+.+... +. .+.. ..+|+.. ....++.
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~---~~-~~~~---~~~~~~~-------~~~~~~~ 60 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDG---NG-YVDD---IYGWNFV-------NNDNDPM 60 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCC---CC-cccC---CCccccc-------CCCCCCC
Confidence 68999999999999999999642 2211 111111110 00 0000 0011111 1224467
Q ss_pred CCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCC
Q 047470 218 DFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLG 296 (757)
Q Consensus 218 d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG 296 (757)
|..+|||||||||+|...++. .+.|+||+|+|+.+|++. ..+ ++..+++++++++++.+++|||+|||
T Consensus 61 d~~~HGT~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~---~~~~~~~~~~~~a~~~a~~~~~~vin~S~G 129 (259)
T cd07473 61 DDNGHGTHVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLG---ADGSGTTSDAIKAIDYAVDMGAKIINNSWG 129 (259)
T ss_pred CCCCcHHHHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeC---CCCCcCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence 889999999999998754322 247999999999999998 555 78889999999999999999999999
Q ss_pred CCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC---CCccc--CCCceEEeccccccccceeeEEeCCCcEEEEEee
Q 047470 297 FDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP---RSIHN--GAPWITTVGAGTLDRSFHATVTLDNGLTFKGISY 370 (757)
Q Consensus 297 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~---~~~~~--~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l 370 (757)
... ....+..++..+.++|++||+||||++ .. ..++. ..+++|+||+...
T Consensus 130 ~~~---~~~~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~--------------------- 185 (259)
T cd07473 130 GGG---PSQALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDS--------------------- 185 (259)
T ss_pred CCC---CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCC---------------------
Confidence 874 245666777788999999999999999 42 22332 2467777776321
Q ss_pred cCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccc
Q 047470 371 FPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYI 450 (757)
Q Consensus 371 ~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~ 450 (757)
T Consensus 186 -------------------------------------------------------------------------------- 185 (259)
T cd07473 186 -------------------------------------------------------------------------------- 185 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCc
Q 047470 451 PSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPF 530 (757)
Q Consensus 451 p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~ 530 (757)
.+.++.||++||.. ||+.|||.++++..+..
T Consensus 186 ---------------------------------------~~~~~~~s~~g~~~-------~~~~apG~~~~~~~~~~--- 216 (259)
T cd07473 186 ---------------------------------------NDALASFSNYGKKT-------VDLAAPGVDILSTSPGG--- 216 (259)
T ss_pred ---------------------------------------CCCcCcccCCCCCC-------cEEEeccCCeEeccCCC---
Confidence 22466799999863 59999999999976655
Q ss_pred cccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 531 IEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 531 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.|..++|||||||+|||++||++|++|.+++++||++|++||+
T Consensus 217 ----------~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 217 ----------GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred ----------cEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 7999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=342.04 Aligned_cols=242 Identities=24% Similarity=0.231 Sum_probs=173.1
Q ss_pred CCCCCC-CCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 132 GLWPSA-RYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 132 ~~~~~~-~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
.+|+.. ..|+||+|+|||+|||.+||+|.++.... ..
T Consensus 6 ~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~~------------------------------~~------------ 43 (277)
T cd04843 6 YAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGITL------------------------------IS------------ 43 (277)
T ss_pred HHHHhcCCCCCcEEEEEecCCCCCCChhhccccccc------------------------------cC------------
Confidence 478774 35999999999999999999998531100 00
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh----C
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA----D 286 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~----~ 286 (757)
...+.|+++|||||||||+|... ..| +.||||+|+|+.+|+++ .++++++|++|++ .
T Consensus 44 --~~~~~d~~gHGT~VAGiIaa~~n----~~G-----~~GvAp~a~l~~i~v~~--------~~~~~~ai~~A~~~~~~~ 104 (277)
T cd04843 44 --GLTDQADSDHGTAVLGIIVAKDN----GIG-----VTGIAHGAQAAVVSSTR--------VSNTADAILDAADYLSPG 104 (277)
T ss_pred --CCCCCCCCCCcchhheeeeeecC----CCc-----eeeeccCCEEEEEEecC--------CCCHHHHHHHHHhccCCC
Confidence 01145778999999999998631 112 47999999999999975 2456667777766 3
Q ss_pred CCcEEEeCCCCCCCC------CccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc-------------cCCCceEEecc
Q 047470 287 GVDIMSLSLGFDQTP------YFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH-------------NGAPWITTVGA 346 (757)
Q Consensus 287 g~dVIn~SlG~~~~~------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~-------------~~ap~~itVga 346 (757)
++.+||||||..... .....+..++.++.++|+++|+||||++ ...... ...|++|+|||
T Consensus 105 ~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA 184 (277)
T cd04843 105 DVILLEMQTGGPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGA 184 (277)
T ss_pred CEEEEEccccCCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEe
Confidence 567899999986411 1233455677788899999999999998 421110 01235566655
Q ss_pred ccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHH
Q 047470 347 GTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEV 426 (757)
Q Consensus 347 s~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~ 426 (757)
+..+
T Consensus 185 ~~~~---------------------------------------------------------------------------- 188 (277)
T cd04843 185 GSST---------------------------------------------------------------------------- 188 (277)
T ss_pred ccCC----------------------------------------------------------------------------
Confidence 3110
Q ss_pred HHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCC
Q 047470 427 DRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISP 506 (757)
Q Consensus 427 ~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 506 (757)
....++.|||+|+..
T Consensus 189 --------------------------------------------------------------~~~~~~~fSn~G~~v--- 203 (277)
T cd04843 189 --------------------------------------------------------------TGHTRLAFSNYGSRV--- 203 (277)
T ss_pred --------------------------------------------------------------CCCccccccCCCCcc---
Confidence 011378999999987
Q ss_pred CCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHH----h-CCCCCHHHHHHHHHhc
Q 047470 507 GILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKA----I-HRDWSPAAIRSAIMTT 581 (757)
Q Consensus 507 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~p~~s~~~ik~~L~~T 581 (757)
||+|||++|+++.+...... .+.....|..++|||||||||||++|||++ + +|+|+|+|||++|++|
T Consensus 204 -----di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t 275 (277)
T cd04843 204 -----DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTAT 275 (277)
T ss_pred -----ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhc
Confidence 99999999999987653210 011112457899999999999999999975 3 4999999999999999
Q ss_pred cc
Q 047470 582 AY 583 (757)
Q Consensus 582 A~ 583 (757)
+.
T Consensus 276 ~~ 277 (277)
T cd04843 276 GT 277 (277)
T ss_pred CC
Confidence 74
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=349.68 Aligned_cols=273 Identities=35% Similarity=0.504 Sum_probs=207.7
Q ss_pred EEEEEecCCccCCcccc-CCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCC
Q 047470 144 IIGIIDTGIWPESESFH-DKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGH 222 (757)
Q Consensus 144 ~VgVIDtGid~~Hp~f~-~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gH 222 (757)
+|||||||||++||+|. .+ ....++.+.+.|.++. .......|..+|
T Consensus 1 ~V~viDtGid~~h~~~~~~~----------------------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~H 48 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGN----------------------FIWSKVPGGYNFVDGN----------PNPSPSDDDNGH 48 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTT----------------------EEEEEEEEEEETTTTB----------STTTSSSTSSSH
T ss_pred CEEEEcCCcCCCChhHccCC----------------------cccccccceeeccCCC----------CCcCccccCCCc
Confidence 69999999999999998 32 0122344455554421 112345678899
Q ss_pred chhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHH-hCCCcEEEeCCCCC--C
Q 047470 223 GTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAI-ADGVDIMSLSLGFD--Q 299 (757)
Q Consensus 223 GThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~-~~g~dVIn~SlG~~--~ 299 (757)
||||||+|+|.. . .+ .....|+||+|+|+.+|++. ..+....+++++|++++ +++++|||||||.. .
T Consensus 49 GT~va~ii~~~~-~-~~-----~~~~~Gva~~a~l~~~~i~~---~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~ 118 (282)
T PF00082_consen 49 GTHVAGIIAGNG-G-NN-----GPGINGVAPNAKLYSYKIFD---NSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGP 118 (282)
T ss_dssp HHHHHHHHHHTT-S-SS-----SSSETCSSTTSEEEEEECSS---TTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESS
T ss_pred cchhhhhccccc-c-cc-----cccccccccccccccccccc---ccccccccccchhhhhhhccCCccccccccccccc
Confidence 999999999986 2 21 12247999999999999987 55677888999999999 89999999999883 2
Q ss_pred -CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCC---CcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCC
Q 047470 300 -TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPR---SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPES 374 (757)
Q Consensus 300 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~---~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~ 374 (757)
.....+.+..+...+.++|+++|+||||++ ... ..+...+++|+||+...
T Consensus 119 ~~~~~~~~~~~~~~~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~------------------------- 173 (282)
T PF00082_consen 119 PDPSYSDILEEAIDYAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDN------------------------- 173 (282)
T ss_dssp SHSHHHHHHHHHHHHHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEET-------------------------
T ss_pred cccccccccccccccccccCcceeecccccccccccccccccccccccccccccc-------------------------
Confidence 223344566667788899999999999998 433 34455577888886321
Q ss_pred CCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEE
Q 047470 375 VYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLI 454 (757)
Q Consensus 375 ~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~ 454 (757)
T Consensus 174 -------------------------------------------------------------------------------- 173 (282)
T PF00082_consen 174 -------------------------------------------------------------------------------- 173 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccC
Q 047470 455 LPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIG 534 (757)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 534 (757)
.+.++.||++|+... ++++||||+|||.+|++.++....
T Consensus 174 -----------------------------------~~~~~~~s~~g~~~~-~~~~~~di~a~G~~i~~~~~~~~~----- 212 (282)
T PF00082_consen 174 -----------------------------------NGQPASYSNYGGPSD-DGRIKPDIAAPGGNILSAVPGSDR----- 212 (282)
T ss_dssp -----------------------------------TSSBSTTSSBSTTET-TCTTCEEEEEECSSEEEEETTTES-----
T ss_pred -----------------------------------ccccccccccccccc-cccccccccccccccccccccccc-----
Confidence 124688999976543 689999999999999988876521
Q ss_pred CCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCC
Q 047470 535 NYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMD 614 (757)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~ 614 (757)
..|..++|||||||+|||++||++|++|+|++.+||.+|++||++..... ....+..||||+||+++|++
T Consensus 213 -----~~~~~~~GTS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~-----~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 213 -----GSYTSFSGTSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTN-----GEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp -----EEEEEEESHHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETT-----SSSSHHHHTTSBE-HHHHHH
T ss_pred -----ccccccCcCCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCC-----CCCCCCCccCChhCHHHHhC
Confidence 15889999999999999999999999999999999999999999987211 23456688999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=329.13 Aligned_cols=225 Identities=39% Similarity=0.540 Sum_probs=183.4
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
||+|||||+||+.+||+|.+. +...++|... .. ....|..+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~---------------------------~~~~~~~~~~-----------~~-~~~~~~~~ 41 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN---------------------------IVGGANFTGD-----------DN-NDYQDGNG 41 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc---------------------------ccCcccccCC-----------CC-CCCCCCCC
Confidence 799999999999999999853 1111222211 00 23567889
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQT 300 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 300 (757)
|||||||+|++..... .+.|+||+|+|+.+|+++ ..+ +...++++++++|++.+++|||||||...
T Consensus 42 HGT~vA~ii~~~~~~~---------~~~giap~a~i~~~~~~~---~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~- 108 (229)
T cd07477 42 HGTHVAGIIAALDNGV---------GVVGVAPEADLYAVKVLN---DDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS- 108 (229)
T ss_pred CHHHHHHHHhcccCCC---------ccEeeCCCCEEEEEEEEC---CCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC-
Confidence 9999999999875322 347999999999999998 555 66789999999999999999999999864
Q ss_pred CCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC--cccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCC
Q 047470 301 PYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS--IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYI 377 (757)
Q Consensus 301 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~--~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~ 377 (757)
....+..++..+.++|+++|+||||++ .... +++..+++|+||+.+.
T Consensus 109 --~~~~~~~~~~~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~---------------------------- 158 (229)
T cd07477 109 --DSPALREAIKKAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDS---------------------------- 158 (229)
T ss_pred --CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecC----------------------------
Confidence 234555666688899999999999999 5444 3777889999987422
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEech
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPT 457 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~ 457 (757)
T Consensus 159 -------------------------------------------------------------------------------- 158 (229)
T cd07477 159 -------------------------------------------------------------------------------- 158 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCc
Q 047470 458 SAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYE 537 (757)
Q Consensus 458 ~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~ 537 (757)
.+.++.||++|+.. |+.|||++|+++.+.+
T Consensus 159 --------------------------------~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~~---------- 188 (229)
T cd07477 159 --------------------------------NNNRASFSSTGPEV--------ELAAPGVDILSTYPNN---------- 188 (229)
T ss_pred --------------------------------CCCcCCccCCCCCc--------eEEeCCCCeEEecCCC----------
Confidence 12457899999976 9999999999998775
Q ss_pred cccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047470 538 LVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581 (757)
Q Consensus 538 ~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~T 581 (757)
.|..++|||||||+|||++|||+|++|++++.+||++|++|
T Consensus 189 ---~~~~~~GTS~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 189 ---DYAYLSGTSMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred ---CEEEEccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999986
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=333.21 Aligned_cols=218 Identities=22% Similarity=0.280 Sum_probs=164.8
Q ss_pred CCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCC
Q 047470 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDF 219 (757)
Q Consensus 140 G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~ 219 (757)
+++|+|||||||||++||+|.++ +...++|...... + ........|.
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~---------------------------i~~~~~~~~~~~~--~----~~~~~~~~d~ 48 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK---------------------------IIGGKSFSPYEGD--G----NKVSPYYVSA 48 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc---------------------------cccCCCCCCCCCC--c----ccCCCCCCCC
Confidence 78999999999999999999853 1112222211000 0 0001123568
Q ss_pred CCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC----CCCHHHHHHHHHHHHhCCCcEEEeCC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE----ESAASDVLAGMDQAIADGVDIMSLSL 295 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~----g~~~~~i~~ai~~a~~~g~dVIn~Sl 295 (757)
.||||||||||+ |+||+|+|+.+|+++..... .++..++++||+||+++|+|||||||
T Consensus 49 ~gHGT~vAgiI~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~ 110 (247)
T cd07491 49 DGHGTAMARMIC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSW 110 (247)
T ss_pred CCcHHHHHHHHH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeee
Confidence 899999999996 78999999999999832111 24677899999999999999999999
Q ss_pred CCCCCC---CccCHHHHHHHHHHhCCcEEEEecCCCC-CCC-C--cccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 296 GFDQTP---YFNDVIAIASLSAIENGIVVVCAAGNDG-FPR-S--IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 296 G~~~~~---~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~-~--~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|..... .....+..++.+|.++|++||+||||+| ... . .+...|++|+|||.+.
T Consensus 111 g~~~~~~~~~~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~------------------- 171 (247)
T cd07491 111 TIKKPEDNDNDINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADE------------------- 171 (247)
T ss_pred ecccccccccchHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCC-------------------
Confidence 986521 1256778888899999999999999999 443 3 3455688999987422
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 172 -------------------------------------------------------------------------------- 171 (247)
T cd07491 172 -------------------------------------------------------------------------------- 171 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++|+.. |++|||++|+++.+...
T Consensus 172 -----------------------------------------~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~~ 202 (247)
T cd07491 172 -----------------------------------------DGGADAPVGDEDRV--------DYILPGENVEARDRPPL 202 (247)
T ss_pred -----------------------------------------CCCCccccCCCCcc--------eEEeCCCceecCCcCCC
Confidence 22467899999987 99999999999875210
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhC
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH 566 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~ 566 (757)
...|..++|||||||||||++||+++..
T Consensus 203 ----------~~~~~~~sGTS~Atp~vaGvaAL~l~~~ 230 (247)
T cd07491 203 ----------SNSFVTHTGSSVATALAAGLAALILYCV 230 (247)
T ss_pred ----------CCCeeeeccHHHHHHHHHHHHHHHHHHH
Confidence 1279999999999999999999999853
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=338.87 Aligned_cols=147 Identities=28% Similarity=0.363 Sum_probs=104.0
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
.|+|||||||||++||+|.+.... ..+.+...............+.....|..|
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 54 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISS--------------------------YSKNLVPKGGYDGKEAGETGDINDIVDKLG 54 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhcccc--------------------------cccccccCCCcCCccccccCCCCcCCCCCC
Confidence 389999999999999999853110 000000000000000001111234567899
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQT 300 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 300 (757)
|||||||+|+|+.. ..||||+|+|+.+|+++ ..+ ....+++++|++|++++++|||||||....
T Consensus 55 HGT~vAgiia~~~~------------~~GvAp~a~i~~~~v~~---~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~ 119 (294)
T cd07482 55 HGTAVAGQIAANGN------------IKGVAPGIGIVSYRVFG---SCGSAESSWIIKAIIDAADDGVDVINLSLGGYLI 119 (294)
T ss_pred cHhHHHHHHhcCCC------------CceeCCCCEEEEEEeec---CCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCC
Confidence 99999999998632 24999999999999998 555 488899999999999999999999998651
Q ss_pred C--------CccCHHHHHHHHHHhCCcEEEEecCCCC
Q 047470 301 P--------YFNDVIAIASLSAIENGIVVVCAAGNDG 329 (757)
Q Consensus 301 ~--------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g 329 (757)
. ...+.+..++..+.++|++||+||||+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~i~~a~~~g~lvv~AAGN~g 156 (294)
T cd07482 120 IGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAAGNDG 156 (294)
T ss_pred CCcccccchhhhHHHHHHHHHHHHCCCEEEEeCCCCC
Confidence 1 1123456666678899999999999999
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-38 Score=321.90 Aligned_cols=221 Identities=23% Similarity=0.245 Sum_probs=170.9
Q ss_pred ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCC
Q 047470 142 GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFG 221 (757)
Q Consensus 142 Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 221 (757)
||+|||||||||++||+|.+.... .+.+..+ . .........|..|
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~---------------------------~~~~~~~-~-------~~~~~~~~~d~~g 45 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD---------------------------GEVTIDL-E-------IIVVSAEGGDKDG 45 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc---------------------------ccccccc-c-------cccCCCCCCCCCC
Confidence 799999999999999999853110 0001000 0 0011133567889
Q ss_pred CchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCC
Q 047470 222 HGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQT 300 (757)
Q Consensus 222 HGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~ 300 (757)
|||||||||++ .+|+++|+.+|+++ ..+ +..+++++||+|+++++++|||||||....
T Consensus 46 HGT~vAgiia~------------------~~p~~~i~~~~v~~---~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~ 104 (222)
T cd07492 46 HGTACAGIIKK------------------YAPEAEIGSIKILG---EDGRCNSFVLEKALRACVENDIRIVNLSLGGPGD 104 (222)
T ss_pred cHHHHHHHHHc------------------cCCCCeEEEEEEeC---CCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC
Confidence 99999999984 46999999999998 555 788899999999999999999999998752
Q ss_pred CCccCHHHHHHHHHHhCCcEEEEecCCCCCCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCcee
Q 047470 301 PYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDA 380 (757)
Q Consensus 301 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 380 (757)
.....+..++.++.++|+++|+||||++.....++..|.+|+||+...++
T Consensus 105 -~~~~~~~~~~~~a~~~g~l~V~aagN~~~~~~~Pa~~~~vi~V~~~~~~~----------------------------- 154 (222)
T cd07492 105 -RDFPLLKELLEYAYKAGGIIVAAAPNNNDIGTPPASFPNVIGVKSDTADD----------------------------- 154 (222)
T ss_pred -CcCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCceEEEEecCCCC-----------------------------
Confidence 22345666777888899999999999992223356667888888642110
Q ss_pred eeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhH
Q 047470 381 PLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAG 460 (757)
Q Consensus 381 p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g 460 (757)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCcccc
Q 047470 461 TSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVT 540 (757)
Q Consensus 461 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~ 540 (757)
.. +.+++. +|+.|||.+|+++.+.+
T Consensus 155 -------------------------------~~---~~~~~~--------~~~~apg~~i~~~~~~~------------- 179 (222)
T cd07492 155 -------------------------------PK---SFWYIY--------VEFSADGVDIIAPAPHG------------- 179 (222)
T ss_pred -------------------------------Cc---ccccCC--------ceEEeCCCCeEeecCCC-------------
Confidence 01 112333 49999999999988775
Q ss_pred ceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 541 DYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 541 ~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
.|..++|||||||+|||++|||+|++|+|+++|||++|++||+
T Consensus 180 ~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 180 RYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred CEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=329.50 Aligned_cols=363 Identities=25% Similarity=0.328 Sum_probs=264.8
Q ss_pred CCCceEEEEeCCCCCCCccccHHHHHHHhhcccCCC---CCCCCcEEEEecceeeEEEEEcCH-----HHHHHHHcCCCe
Q 047470 34 EDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYP---ADRNNMLLYSYNHVIQGFSARLTP-----SQLSEIEKSPAH 105 (757)
Q Consensus 34 ~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~g~s~~l~~-----~~~~~L~~~p~V 105 (757)
-.+.+|||.|+... ..+.++..+++.|+..... -.+....-..|...|.-+-++-.. -+++.|..+|.|
T Consensus 47 vve~EyIv~F~~y~---~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~v 123 (1033)
T KOG4266|consen 47 VVESEYIVRFKQYK---PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDV 123 (1033)
T ss_pred eecceeEEEecccc---cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCc
Confidence 35788999999876 2345566677766643311 001223334555566666665432 248899999999
Q ss_pred EEEEecccccccccC------------C------------------CCccC-----CCC-------CCCCCCCCCCCCcc
Q 047470 106 LATYPESFGKLFTTH------------S------------------PNFLG-----LKP-------NSGLWPSARYGQGV 143 (757)
Q Consensus 106 ~~V~~~~~~~~~~~~------------s------------------~~~~g-----~~~-------~~~~~~~~~~G~Gv 143 (757)
+.|.|.+.+...... . +.-|+ ... .+-+|.+|+||++|
T Consensus 124 k~v~pqr~V~r~l~y~~~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~V 203 (1033)
T KOG4266|consen 124 KVVFPQRRVLRGLSYPDGKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKV 203 (1033)
T ss_pred eeecchhhhhhcccccccCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCce
Confidence 999998876541100 0 00000 000 03589999999999
Q ss_pred EEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCc
Q 047470 144 IIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHG 223 (757)
Q Consensus 144 ~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHG 223 (757)
+|||.|||+..+||.|+.- ....++++. ....|..|||
T Consensus 204 kvAiFDTGl~~~HPHFrnv----------------------------KERTNWTNE--------------~tLdD~lgHG 241 (1033)
T KOG4266|consen 204 KVAIFDTGLRADHPHFRNV----------------------------KERTNWTNE--------------DTLDDNLGHG 241 (1033)
T ss_pred EEEEeecccccCCccccch----------------------------hhhcCCcCc--------------cccccCcccc
Confidence 9999999999999999841 000111110 2356788999
Q ss_pred hhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCC
Q 047470 224 THTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQTPY 302 (757)
Q Consensus 224 ThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~ 302 (757)
|.|||+|||.. .-.|.||+++|+++|||. +.- ...+++++|++||+...+||+|+|+|++. +
T Consensus 242 TFVAGvia~~~------------ec~gfa~d~e~~~frvft---~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGPD--f 304 (1033)
T KOG4266|consen 242 TFVAGVIAGRN------------ECLGFASDTEIYAFRVFT---DAQVSYTSWFLDAFNYAIATKIDVLNLSIGGPD--F 304 (1033)
T ss_pred eeEeeeeccch------------hhcccCCccceeEEEeec---cceeehhhHHHHHHHHHHhhhcceEeeccCCcc--c
Confidence 99999999873 136999999999999998 444 88999999999999999999999999984 4
Q ss_pred ccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCC--ceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCce
Q 047470 303 FNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAP--WITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITD 379 (757)
Q Consensus 303 ~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap--~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~ 379 (757)
.+.++-.-+......+|++|.|+||+| -.++..+++. .+|.||
T Consensus 305 mD~PFVeKVwEltAnNvIMvSAiGNDGPLYGTLNNPaDQsDViGVG---------------------------------- 350 (1033)
T KOG4266|consen 305 MDLPFVEKVWELTANNVIMVSAIGNDGPLYGTLNNPADQSDVIGVG---------------------------------- 350 (1033)
T ss_pred ccchHHHHHHhhccCcEEEEEecCCCCcceeecCCcccccceeeec----------------------------------
Confidence 555665556678889999999999999 6666665543 233333
Q ss_pred eeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhh
Q 047470 380 APLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSA 459 (757)
Q Consensus 380 ~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~ 459 (757)
+
T Consensus 351 ---------------------------------------------------G---------------------------- 351 (1033)
T KOG4266|consen 351 ---------------------------------------------------G---------------------------- 351 (1033)
T ss_pred ---------------------------------------------------c----------------------------
Confidence 2
Q ss_pred HHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCC----CCCCCCceEEeCCCCeEecccCCCCccccCC
Q 047470 460 GTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPI----SPGILKPDIVAPGVDVLAAVAPNIPFIEIGN 535 (757)
Q Consensus 460 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~ 535 (757)
.+.++.++.|||||-+.. ..||+||||++-|.+|.......
T Consensus 352 ---------------------------IdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~~-------- 396 (1033)
T KOG4266|consen 352 ---------------------------IDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVST-------- 396 (1033)
T ss_pred ---------------------------ccccchhhhhccCCcceeecCCcccccCCceEeeccccccCcccc--------
Confidence 233558999999997542 45899999999999998765554
Q ss_pred CccccceEeeccccchhhhHhHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccc
Q 047470 536 YELVTDYALFSGTSMAAPHVAGVAALLKA----IHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNK 611 (757)
Q Consensus 536 ~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~ 611 (757)
+...+||||.|+|.|||+++||.+ +.--++|+.+|.+|+..|.+++.. .-++||+|++|+.+
T Consensus 397 -----GCr~LSGTSVaSPVVAGav~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~---------NMfEQGaGkldLL~ 462 (1033)
T KOG4266|consen 397 -----GCRSLSGTSVASPVVAGAVCLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP---------NMFEQGAGKLDLLE 462 (1033)
T ss_pred -----cchhccCCcccchhhhceeeeEeeeheehhhccCHHHHHHHHHhHHhhCCCC---------chhhccCcchhHHH
Confidence 678999999999999999999965 334569999999999999998643 45799999999999
Q ss_pred cCCCCceec
Q 047470 612 AMDPGLIYD 620 (757)
Q Consensus 612 Al~~~lv~d 620 (757)
+++--+-|.
T Consensus 463 syqiL~SYk 471 (1033)
T KOG4266|consen 463 SYQILKSYK 471 (1033)
T ss_pred HHHHHHhcC
Confidence 887433333
|
|
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=336.24 Aligned_cols=248 Identities=23% Similarity=0.235 Sum_probs=177.3
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++|+||+|+|||||||++||+|.+.... ...++|.....
T Consensus 29 ~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~-------------------------~~~~~~~~~~~--------- 74 (297)
T cd04059 29 TPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP-------------------------EASYDFNDNDP--------- 74 (297)
T ss_pred HHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc-------------------------cccccccCCCC---------
Confidence 45899999999999999999999999999854211 01112211100
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcE
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDI 290 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dV 290 (757)
.+.....|..||||||||||+|+..+.. ...||||+|+|+.+|+++ .. .....+..++.++.+ .++|
T Consensus 75 ~~~~~~~~~~gHGT~vAgiiag~~~~~~--------~~~GvAp~a~l~~~~~~~---~~-~~~~~~~~~~~~~~~-~~~V 141 (297)
T cd04059 75 DPTPRYDDDNSHGTRCAGEIAAVGNNGI--------CGVGVAPGAKLGGIRMLD---GD-VTDVVEAESLGLNPD-YIDI 141 (297)
T ss_pred CCCCccccccccCcceeeEEEeecCCCc--------ccccccccceEeEEEecC---Cc-cccHHHHHHHhcccC-CceE
Confidence 0000113788999999999999853211 237999999999999997 33 334455566666554 4699
Q ss_pred EEeCCCCCCCC----CccCHHHHHHHHHHh-----CCcEEEEecCCCC-CCCC----cccCCCceEEeccccccccceee
Q 047470 291 MSLSLGFDQTP----YFNDVIAIASLSAIE-----NGIVVVCAAGNDG-FPRS----IHNGAPWITTVGAGTLDRSFHAT 356 (757)
Q Consensus 291 In~SlG~~~~~----~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~g-~~~~----~~~~ap~~itVgas~~~~~~~~~ 356 (757)
||||||..... ........++.++.. +|++||+||||+| .... .....|++|+|||.+.
T Consensus 142 in~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~------- 214 (297)
T cd04059 142 YSNSWGPDDDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTA------- 214 (297)
T ss_pred EECCCCCCCCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCC-------
Confidence 99999986521 122233344444443 6999999999999 3221 1234567788876421
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEE
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIF 436 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i 436 (757)
T Consensus 215 -------------------------------------------------------------------------------- 214 (297)
T cd04059 215 -------------------------------------------------------------------------------- 214 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeC
Q 047470 437 LTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAP 516 (757)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 516 (757)
.+.++.||++|+.. +++||
T Consensus 215 -----------------------------------------------------~g~~~~~s~~g~~~--------~~~a~ 233 (297)
T cd04059 215 -----------------------------------------------------NGVRASYSEVGSSV--------LASAP 233 (297)
T ss_pred -----------------------------------------------------CCCCcCCCCCCCcE--------EEEec
Confidence 23568899999988 99999
Q ss_pred CCC-------eEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 517 GVD-------VLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 517 G~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
|.. |+++..... ...|..++|||||||+|||++|||+|++|+|++.|||++|++||+
T Consensus 234 g~~~~~~~~~i~~~~~~~~----------~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 234 SGGSGNPEASIVTTDLGGN----------CNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCCCCCCCCceEeCCCCCC----------CCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 987 666654420 126789999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-37 Score=321.24 Aligned_cols=241 Identities=29% Similarity=0.317 Sum_probs=182.1
Q ss_pred CCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCC
Q 047470 139 YGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARD 218 (757)
Q Consensus 139 ~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d 218 (757)
+|+||+|+|||+||+.+||+|.+...... .+.... ........|
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~~---------------------------~~~~~~---------~~~~~~~~~ 44 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEAS---------------------------YYVAVN---------DAGYASNGD 44 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCcccccc---------------------------cccccc---------cccCCCCCC
Confidence 69999999999999999999986421100 000000 000123456
Q ss_pred CCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC--CCCHHHHHHHHHHHHhCCCcEEEeCCC
Q 047470 219 FFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE--ESAASDVLAGMDQAIADGVDIMSLSLG 296 (757)
Q Consensus 219 ~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~--g~~~~~i~~ai~~a~~~g~dVIn~SlG 296 (757)
..+|||||||+|+|+..+ ..+.|+||+|+|+.+|+++ .. ......+.++++++++.+++|||||||
T Consensus 45 ~~~HGT~vagiiag~~~~---------~~~~GiAp~a~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g 112 (267)
T cd04848 45 GDSHGTHVAGVIAAARDG---------GGMHGVAPDATLYSARASA---SAGSTFSDADIAAAYDFLAASGVRIINNSWG 112 (267)
T ss_pred CCChHHHHHHHHhcCcCC---------CCcccCCcCCEEEEEeccC---CCCcccchHHHHHHHHHHHhCCCeEEEccCC
Confidence 789999999999998533 3357999999999999998 44 356778889999999999999999999
Q ss_pred CCCCC------------CccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc---------cCCCceEEeccccccccce
Q 047470 297 FDQTP------------YFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH---------NGAPWITTVGAGTLDRSFH 354 (757)
Q Consensus 297 ~~~~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~---------~~ap~~itVgas~~~~~~~ 354 (757)
..... ...+.+......+.++|+++|+||||++ ...... ...+++|+||+.+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~---- 188 (267)
T cd04848 113 GNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN---- 188 (267)
T ss_pred CCCcccccccchhhhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC----
Confidence 87621 1445666677788899999999999998 432221 234567777764221
Q ss_pred eeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEE
Q 047470 355 ATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAA 434 (757)
Q Consensus 355 ~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g 434 (757)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCcccc--ccCCCCCCCCCCCCCce
Q 047470 435 IFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVAS--FSSRGPDPISPGILKPD 512 (757)
Q Consensus 435 ~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~--fSs~Gp~~~~~~~lKPD 512 (757)
+.... ||++|+... .++
T Consensus 189 --------------------------------------------------------~~~~~~~~s~~~~~~~-----~~~ 207 (267)
T cd04848 189 --------------------------------------------------------GTIASYSYSNRCGVAA-----NWC 207 (267)
T ss_pred --------------------------------------------------------CCcccccccccchhhh-----hhe
Confidence 12233 488887542 347
Q ss_pred EEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhccc
Q 047470 513 IVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAY 583 (757)
Q Consensus 513 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~ 583 (757)
++|||.+|+++.+... ..|..++|||||||+|||++||++|++|++++++||++|++||+
T Consensus 208 ~~apG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 208 LAAPGENIYSTDPDGG-----------NGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred eecCcCceeecccCCC-----------CcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999887311 17889999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-34 Score=316.71 Aligned_cols=364 Identities=24% Similarity=0.283 Sum_probs=235.9
Q ss_pred CCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCC
Q 047470 220 FGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQ 299 (757)
Q Consensus 220 ~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~ 299 (757)
..||||||||++|+.... ....||||+|+|+++++.+..-..-.+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~--------p~~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPET--------PELNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCC--------ccccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 459999999999997543 234699999999999998732111246677899999999999999999999887
Q ss_pred -CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccC---CCceEEeccccccccceeeEEeCCCcEEEEEeecCCC
Q 047470 300 -TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNG---APWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPES 374 (757)
Q Consensus 300 -~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~---ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~ 374 (757)
-+.....++++-..+.++|+++|.||||+| ...+++.+ ...+|.|||--..
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp------------------------ 437 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSP------------------------ 437 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCH------------------------
Confidence 455566777666666699999999999999 66655432 2366666652100
Q ss_pred CCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEE
Q 047470 375 VYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLI 454 (757)
Q Consensus 375 ~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~ 454 (757)
.+.+...++.
T Consensus 438 -------------------------------------------~mm~a~y~~~--------------------------- 447 (1304)
T KOG1114|consen 438 -------------------------------------------GMMQAEYSVR--------------------------- 447 (1304)
T ss_pred -------------------------------------------HHHHhhhhhh---------------------------
Confidence 0000000000
Q ss_pred echhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccC
Q 047470 455 LPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIG 534 (757)
Q Consensus 455 i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~ 534 (757)
..-......+|||||+. ||.+--.|+|||+.|.+- |..
T Consensus 448 --------------------------------e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~------- 485 (1304)
T KOG1114|consen 448 --------------------------------EPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQY------- 485 (1304)
T ss_pred --------------------------------ccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chh-------
Confidence 01123578899999999 899999999999998663 221
Q ss_pred CCccccceEeeccccchhhhHhHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCcc
Q 047470 535 NYELVTDYALFSGTSMAAPHVAGVAALLKA----IHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPN 610 (757)
Q Consensus 535 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~ 610 (757)
....-+.|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.++.+. .++.||.|++++.
T Consensus 486 ---tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i---------d~faqG~GmlqVd 553 (1304)
T KOG1114|consen 486 ---TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI---------DSFAQGQGMLQVD 553 (1304)
T ss_pred ---hhhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc---------chhccCcceeehh
Confidence 112567899999999999999999865 567899999999999999999654 5789999999999
Q ss_pred ccCCCCceecCCchhhHHhh-hcCCCC-ccceeeeeeccccCCCCCCCCCCCCeEEeeecCCCceEEEEEEEeecCCCce
Q 047470 611 KAMDPGLIYDADFQDYVEFL-CGLGYD-EKQMKAVIRRNQWNCSQESTDLNYPSFAAVFTNETTAKNFSRVVKNVGAEDS 688 (757)
Q Consensus 611 ~Al~~~lv~d~~~~dy~~~l-~~~~~~-~~~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~rtvtnv~~~~~ 688 (757)
+|.+--.-.+...+.-+.|+ -..|.+ ...|.+-. ....|+. .+++. .+.- .|.--..|- ....
T Consensus 554 kAyEyL~q~~~~f~~~l~f~~v~VgN~~srGIyLRe--p~~~~~p--~e~~i---~VeP-------iF~~~~e~~-keki 618 (1304)
T KOG1114|consen 554 KAYEYLAQSDFSFPNALGFINVNVGNSCSRGIYLRE--PTQVCSP--SEHTI---GVEP-------IFENGEENE-KEKI 618 (1304)
T ss_pred HHHHHHHHhhhcCCccceeEEEeeccccccceEecC--CcccCCc--cccce---eccc-------cccCccccc-cccc
Confidence 99872111122222222221 000101 11111111 1112221 11111 0000 000000011 1112
Q ss_pred eEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEEC----CccEEEEEEEEEe
Q 047470 689 IYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQ----YNHTVSSPVVAIK 756 (757)
Q Consensus 689 ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~----~~~~v~~P~~v~~ 756 (757)
.|.+.+..-..-.+.-.|+.+-+. ++.+.|.|+|+++....+.+++.|.--|. .++..|||+.|..
T Consensus 619 ~Fe~~L~L~st~pwVq~p~~l~l~--~~~R~i~VrVDpt~l~~G~hy~eV~gyD~~~p~~gplFrIPVTVi~ 688 (1304)
T KOG1114|consen 619 SFEVQLSLASTQPWVQCPEYLMLA--NQGRGINVRVDPTGLAPGVHYTEVLGYDTANPSRGPLFRIPVTVIK 688 (1304)
T ss_pred cceeeEeeecCCcceeCchhheec--cCCceeEEEECCcCCCCCcceEEEEEeecCCcccCceEEeeeEEEc
Confidence 233332222222244457766654 78899999999999889999999888776 5799999999863
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=278.07 Aligned_cols=193 Identities=24% Similarity=0.220 Sum_probs=139.6
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHH--HhCCCcEEEe
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQA--IADGVDIMSL 293 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a--~~~g~dVIn~ 293 (757)
..|.++|||||||||||. .|++|+|+|+..++.. . ..+.+..+++|+ .+.+++||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~---~~~~~~~~i~~~~~~~~gv~VINm 91 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---K---SNNGQWQECLEAQQNGNNVKIINH 91 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---C---CCCccHHHHHHHHHhcCCceEEEe
Confidence 567899999999999987 3677999998765532 1 233466777887 6679999999
Q ss_pred CCCCCCCC------CccCHHHHHHHHHHhC-CcEEEEecCCCC-CCC-----CcccCCCceEEeccccccccceeeEEeC
Q 047470 294 SLGFDQTP------YFNDVIAIASLSAIEN-GIVVVCAAGNDG-FPR-----SIHNGAPWITTVGAGTLDRSFHATVTLD 360 (757)
Q Consensus 294 SlG~~~~~------~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g-~~~-----~~~~~ap~~itVgas~~~~~~~~~~~~~ 360 (757)
|||..... ...+.+..++..+.++ |+++|+||||+| ... ..+..++++|+|||......
T Consensus 92 S~G~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~-------- 163 (247)
T cd07488 92 SYGEGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD-------- 163 (247)
T ss_pred CCccCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC--------
Confidence 99987522 1234556666666655 999999999999 432 12345678888887522110
Q ss_pred CCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccC
Q 047470 361 NGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDT 440 (757)
Q Consensus 361 ~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~ 440 (757)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCe
Q 047470 441 PDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDV 520 (757)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 520 (757)
....+.||++|.....++..||||+|||++|
T Consensus 164 -------------------------------------------------~~~~s~~sn~~~~~~~~~~~~~di~APG~~i 194 (247)
T cd07488 164 -------------------------------------------------RFFASDVSNAGSEINSYGRRKVLIVAPGSNY 194 (247)
T ss_pred -------------------------------------------------cceecccccccCCCCCCCCceeEEEEeeeeE
Confidence 0023456665433323678999999999999
Q ss_pred EecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCC------HHHHHHHHHhc
Q 047470 521 LAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWS------PAAIRSAIMTT 581 (757)
Q Consensus 521 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s------~~~ik~~L~~T 581 (757)
++ +.+ .|..++|||||||||||++|||++++|++. -.++|.+|+.|
T Consensus 195 ~s--~~~-------------~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 195 NL--PDG-------------KDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred EC--CCC-------------ceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 98 332 688999999999999999999999988766 34567777665
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-30 Score=263.07 Aligned_cols=194 Identities=39% Similarity=0.521 Sum_probs=154.1
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHH-hCCCcEEEe
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAI-ADGVDIMSL 293 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~-~~g~dVIn~ 293 (757)
..+..+||||||++|++...... ..|+||+++|+.+|+.. ..+ .....+++++++++ ..+++||||
T Consensus 40 ~~~~~~HGt~va~~i~~~~~~~~---------~~g~a~~a~i~~~~~~~---~~~~~~~~~~~~ai~~~~~~~~~~iin~ 107 (241)
T cd00306 40 PDDGNGHGTHVAGIIAASANNGG---------GVGVAPGAKLIPVKVLD---GDGSGSSSDIAAAIDYAAADQGADVINL 107 (241)
T ss_pred CCCCCCcHHHHHHHHhcCCCCCC---------CEEeCCCCEEEEEEEec---CCCCcCHHHHHHHHHHHHhccCCCEEEe
Confidence 55678999999999998853321 16999999999999988 444 67888999999999 899999999
Q ss_pred CCCCCCCCCccCHHHHHHHHHHhC-CcEEEEecCCCC-CCC---CcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 294 SLGFDQTPYFNDVIAIASLSAIEN-GIVVVCAAGNDG-FPR---SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 294 SlG~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~g-~~~---~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|||..... ....+...+..+.++ |+++|+|+||.+ ... ..+...+++|+||+.+.+.
T Consensus 108 S~g~~~~~-~~~~~~~~~~~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~----------------- 169 (241)
T cd00306 108 SLGGPGSP-PSSALSEAIDYALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG----------------- 169 (241)
T ss_pred CCCCCCCC-CCHHHHHHHHHHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC-----------------
Confidence 99987522 344566666677777 999999999999 544 4677789999999853321
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccc-cccCCCCCCCCCCCCCceEEeCCCCeEecccCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVA-SFSSRGPDPISPGILKPDIVAPGVDVLAAVAPN 527 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 527 (757)
... .++++|+ |||+.|||..+.......
T Consensus 170 -------------------------------------------~~~~~~~~~~~--------~~~~~apg~~~~~~~~~~ 198 (241)
T cd00306 170 -------------------------------------------TPASPSSNGGA--------GVDIAAPGGDILSSPTTG 198 (241)
T ss_pred -------------------------------------------CccCCcCCCCC--------CceEEeCcCCccCcccCC
Confidence 111 3444444 569999999998751111
Q ss_pred CCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhc
Q 047470 528 IPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTT 581 (757)
Q Consensus 528 ~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~T 581 (757)
...+..++|||||||+|||++||++|++|++++.++|.+|++|
T Consensus 199 -----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 199 -----------GGGYATLSGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred -----------CCCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 1278999999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-25 Score=224.11 Aligned_cols=302 Identities=20% Similarity=0.260 Sum_probs=189.0
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++||+|+++|.|.||||.|||+..+ | .-..+++|.. +++
T Consensus 151 ~~awa~g~tgknvttaimddgvdymhpdlk~n------------------y-------naeasydfss---------ndp 196 (629)
T KOG3526|consen 151 AEAWALGYTGKNVTTAIMDDGVDYMHPDLKSN------------------Y-------NAEASYDFSS---------NDP 196 (629)
T ss_pred HHHHhhcccCCCceEEeecCCchhcCcchhcc------------------c-------Cceeeccccc---------CCC
Confidence 46899999999999999999999999999842 1 1223344432 122
Q ss_pred CCCCCCCC--CCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh-CC
Q 047470 211 YDFDSARD--FFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-DG 287 (757)
Q Consensus 211 ~~~~~~~d--~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~-~g 287 (757)
.++....| .+.|||.|||-+++... ++.+|. |||.+.++..+|+++. -...|+++|-....+ ..
T Consensus 197 fpyprytddwfnshgtrcagev~aard--ngicgv------gvaydskvagirmldq-----pymtdlieansmghep~k 263 (629)
T KOG3526|consen 197 FPYPRYTDDWFNSHGTRCAGEVVAARD--NGICGV------GVAYDSKVAGIRMLDQ-----PYMTDLIEANSMGHEPSK 263 (629)
T ss_pred CCCCcccchhhhccCccccceeeeecc--CCceee------eeeeccccceeeecCC-----chhhhhhhhcccCCCCce
Confidence 33333333 57899999999887653 345554 9999999999999982 455677665433222 35
Q ss_pred CcEEEeCCCCCCCCCccC----HHHHHHHHHH-----hCCcEEEEecCCCC--CCCCcc--cCCCceEEeccccccccce
Q 047470 288 VDIMSLSLGFDQTPYFND----VIAIASLSAI-----ENGIVVVCAAGNDG--FPRSIH--NGAPWITTVGAGTLDRSFH 354 (757)
Q Consensus 288 ~dVIn~SlG~~~~~~~~~----~~~~a~~~a~-----~~Gi~vV~AAGN~g--~~~~~~--~~ap~~itVgas~~~~~~~ 354 (757)
.+|.+.|||.......-| +.-.++-+-+ ..|-++|.|.|..| +.+... +.+-|.|++-+.-.|..-
T Consensus 264 ihiysaswgptddgktvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ddcncdgyaasmwtisinsaindg~n- 342 (629)
T KOG3526|consen 264 IHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGEDDDCNCDGYAASMWTISINSAINDGEN- 342 (629)
T ss_pred EEEEecccCcCCCCcccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCccccCCccchhheEEEEeehhhcCCcc-
Confidence 789999999876322222 2222222222 24568999999888 333222 223355555432111000
Q ss_pred eeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEE
Q 047470 355 ATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAA 434 (757)
Q Consensus 355 ~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g 434 (757)
..| ++.|.
T Consensus 343 ---------------------------ahy------descs--------------------------------------- 350 (629)
T KOG3526|consen 343 ---------------------------AHY------DESCS--------------------------------------- 350 (629)
T ss_pred ---------------------------ccc------cchhh---------------------------------------
Confidence 000 01111
Q ss_pred EEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEE
Q 047470 435 IFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIV 514 (757)
Q Consensus 435 ~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 514 (757)
.-..+.||+-|..+..
T Consensus 351 -------------------------------------------------------stlastfsng~rnpet--------- 366 (629)
T KOG3526|consen 351 -------------------------------------------------------STLASTFSNGGRNPET--------- 366 (629)
T ss_pred -------------------------------------------------------HHHHHHhhcCCcCCCc---------
Confidence 0023567776655421
Q ss_pred eCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccc-
Q 047470 515 APGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIG- 593 (757)
Q Consensus 515 APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~- 593 (757)
| +..+ |.++......||||.|+|-.||+.||.++++|.|++.+++.+-.-|++.....+..-.
T Consensus 367 --g--vatt------------dlyg~ct~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf 430 (629)
T KOG3526|consen 367 --G--VATT------------DLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRF 430 (629)
T ss_pred --c--eeee------------ccccceecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceE
Confidence 1 1111 1112256678999999999999999999999999999999887777765432111000
Q ss_pred ------cCCCCCCCCCCCccCccccCCCCceecCCchhhHHhhhcCCC
Q 047470 594 ------VVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGY 635 (757)
Q Consensus 594 ------~~~~~~~~~G~G~vd~~~Al~~~lv~d~~~~dy~~~l~~~~~ 635 (757)
.....+.-+|+|.+|+.+-+....-+...++ +|-|.-|.
T Consensus 431 ~w~mngvglefnhlfgfgvldagamv~lak~wktvpp---ryhc~ag~ 475 (629)
T KOG3526|consen 431 EWQMNGVGLEFNHLFGFGVLDAGAMVMLAKAWKTVPP---RYHCTAGL 475 (629)
T ss_pred EEeccccceeeecccccccccHHHHHHHHHHhccCCC---ceeecccc
Confidence 2233556799999999887776666666665 45688774
|
|
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.3e-23 Score=233.63 Aligned_cols=271 Identities=34% Similarity=0.451 Sum_probs=193.6
Q ss_pred CCCCCC--CCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCC
Q 047470 131 SGLWPS--ARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVS 208 (757)
Q Consensus 131 ~~~~~~--~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~ 208 (757)
...|.. +.+|+|++|+|||+||+..||+|.+.... .++|.+..
T Consensus 130 ~~~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~~---------------------------~~~~~~~~-------- 174 (508)
T COG1404 130 GALVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAVA---------------------------GGDFVDGD-------- 174 (508)
T ss_pred ccccccccCCCCCCeEEEEeccCCCCCChhhhccccc---------------------------ccccccCC--------
Confidence 457777 89999999999999999999999864210 01121110
Q ss_pred CcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC-C-CCHHHHHHHHHHHHhC
Q 047470 209 KEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE-E-SAASDVLAGMDQAIAD 286 (757)
Q Consensus 209 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~-g-~~~~~i~~ai~~a~~~ 286 (757)
+.....|..+|||||+|++++.... ......|+||+++++.+|++. .. | ....+++.+|+++++.
T Consensus 175 ---~~~~~~d~~~hGt~vag~ia~~~~~-------~~~~~~g~a~~~~~~~~~~~~---~~~g~~~~~~~~~~i~~~~~~ 241 (508)
T COG1404 175 ---PEPPFLDDNGHGTHVAGTIAAVIFD-------NGAGVAGVAPGAKLLLVKVLG---SGGGSGELSDVAEGIEGAANL 241 (508)
T ss_pred ---CCCCCCCCCCCcceeeeeeeeeccc-------CCCccccccCCCcEEEEEecc---CCCCcccHHHHHHHHHHHHhc
Confidence 0002568899999999999984211 112247999999999999998 44 5 7778889999999999
Q ss_pred C--CcEEEeCCCCCCCCCccCHHHHHHHHHHhCC-cEEEEecCCCC-CCCC----cccCC--CceEEeccccccccceee
Q 047470 287 G--VDIMSLSLGFDQTPYFNDVIAIASLSAIENG-IVVVCAAGNDG-FPRS----IHNGA--PWITTVGAGTLDRSFHAT 356 (757)
Q Consensus 287 g--~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~g-~~~~----~~~~a--p~~itVgas~~~~~~~~~ 356 (757)
+ +++||||+|..........+..++..+...| +++|+|+||.+ +... .+... +.+++||+..
T Consensus 242 ~~~~~~in~s~g~~~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~-------- 313 (508)
T COG1404 242 GGPADVINLSLGGSLSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALD-------- 313 (508)
T ss_pred CCCCcEEEecCCCCccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCC--------
Confidence 9 9999999998511123345555555777777 99999999999 4321 11111 1334444321
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEE
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIF 436 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i 436 (757)
T Consensus 314 -------------------------------------------------------------------------------- 313 (508)
T COG1404 314 -------------------------------------------------------------------------------- 313 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeC
Q 047470 437 LTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAP 516 (757)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 516 (757)
..+.++.||++|+.. ..+++||
T Consensus 314 ----------------------------------------------------~~~~~~~~s~~g~~~------~~~~~ap 335 (508)
T COG1404 314 ----------------------------------------------------LSDTVASFSNDGSPT------GVDIAAP 335 (508)
T ss_pred ----------------------------------------------------CCCccccccccCCCC------CcceeCC
Confidence 123678999999852 1299999
Q ss_pred CCCeEe-----cccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC-CCCHHHHHHHHHhcccccCCCCC
Q 047470 517 GVDVLA-----AVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR-DWSPAAIRSAIMTTAYPVNFAEN 590 (757)
Q Consensus 517 G~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~~s~~~ik~~L~~TA~~~~~~~~ 590 (757)
|.+|.+ .+++.. ..|..++||||++|||+|++||+++.+| .+++.+++..+..++.. .
T Consensus 336 g~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~-~---- 399 (508)
T COG1404 336 GVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGL-T---- 399 (508)
T ss_pred CccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhcccc-c----
Confidence 999998 444431 1499999999999999999999999999 89999999998888874 1
Q ss_pred ccccCCCCCCCCCCCccCccccCC
Q 047470 591 EIGVVPATPLDFGAGHIDPNKAMD 614 (757)
Q Consensus 591 ~~~~~~~~~~~~G~G~vd~~~Al~ 614 (757)
........++.|..+...+..
T Consensus 400 ---~~~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 400 ---PLSGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ---cCCccccccccCccccccccc
Confidence 112244567777666655554
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.9e-17 Score=177.38 Aligned_cols=100 Identities=27% Similarity=0.346 Sum_probs=79.9
Q ss_pred ceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhC---CCcEEEeCCCCCCCC---CccCHHHHHHHHHHhCCcE
Q 047470 247 TARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIAD---GVDIMSLSLGFDQTP---YFNDVIAIASLSAIENGIV 320 (757)
Q Consensus 247 ~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~---g~dVIn~SlG~~~~~---~~~~~~~~a~~~a~~~Gi~ 320 (757)
.+.||||+|+|+.|++.+ +. ..+++.++.+++.+ +++|||+|||..... .+.+.+..++.+|..+||+
T Consensus 82 ~~~gvAP~a~i~~~~~~~---~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Git 155 (361)
T cd04056 82 YAGAIAPGANITLYFAPG---TV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGIT 155 (361)
T ss_pred HHHhccCCCeEEEEEECC---cC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeE
Confidence 357999999999999987 32 45677888888887 999999999997522 2335677777888999999
Q ss_pred EEEecCCCC-CCC-----------CcccCCCceEEecccccccc
Q 047470 321 VVCAAGNDG-FPR-----------SIHNGAPWITTVGAGTLDRS 352 (757)
Q Consensus 321 vV~AAGN~g-~~~-----------~~~~~ap~~itVgas~~~~~ 352 (757)
||+|+||+| ... ..++..||+++||+++....
T Consensus 156 vvaAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~~ 199 (361)
T cd04056 156 VLAASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYTG 199 (361)
T ss_pred EEEeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccCC
Confidence 999999999 432 24677899999999877644
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.1e-10 Score=110.32 Aligned_cols=112 Identities=20% Similarity=0.331 Sum_probs=92.2
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----CCCC-CccccE
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----IDSD-EYYIPS 452 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~~~~-~~~~p~ 452 (757)
...+++|.+. |.+.++...+++|||+||+|+. |.+.+|..+++.+|| .|+|++|+.. .... ...+|+
T Consensus 26 ~~~~lv~~g~------g~~~d~~~~dv~GkIvL~~rg~-c~~~~K~~~a~~aGA-~gvIi~n~~~~~~~~~~~~~~~iP~ 97 (143)
T cd02133 26 KTYELVDAGL------GTPEDFEGKDVKGKIALIQRGE-ITFVEKIANAKAAGA-VGVIIYNNVDGLIPGTLGEAVFIPV 97 (143)
T ss_pred cEEEEEEccC------CchhccCCCCccceEEEEECCC-CCHHHHHHHHHHCCC-eEEEEeecCCCcccccCCCCCeEeE
Confidence 6788998664 6566677778999999999999 999999999999999 9999998876 1111 246899
Q ss_pred EEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCC
Q 047470 453 LILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDP 503 (757)
Q Consensus 453 ~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~ 503 (757)
++|+..+|+.|++|+++ .+++.+..+.. ..+.+.++.||||||+.
T Consensus 98 v~Is~~dG~~L~~~l~~-----~~~i~~~~~~~-~~~~p~va~fSsrgp~g 142 (143)
T cd02133 98 VFISKEDGEALKAALES-----SKKLTFNTKKE-KATNPDLADFSSRGPWG 142 (143)
T ss_pred EEecHHHHHHHHHHHhC-----CCeEEEEeccc-cccCCccccccCcCCCC
Confidence 99999999999999986 45677776655 45677899999999974
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=105.67 Aligned_cols=114 Identities=33% Similarity=0.621 Sum_probs=94.2
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccC---CCCcccccCCCCCCCCccceEEEEeCCCCC-chhHHHHHHHHcCCe
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKN---DVNKSICHLGSLNPDEVTGKVVFCDNSNRI-DTYSQMEEVDRAGAY 432 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~---~~~~~~c~~~~~~~~~~~gkivl~~~g~~~-~~~~k~~~~~~~Ga~ 432 (757)
++++||.++.|++++++.. ..+|++|..+ ......|.+..++..+++|||++|+++. | .+.+|..++...||
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~~~~~~~~C~~~~~~~~~v~GkIVlc~~~~-~~~~~~k~~~~~~~GA- 77 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANSGDVDASLCLPGSLDPSKVKGKIVLCDRGG-NTSRVAKGDAVKAAGG- 77 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcCCCCccccCCCCCCChhhccccEEEEeCCC-CccHHHHHHHHHHcCC-
Confidence 6789999999999997653 4667776333 3345789988888899999999999998 9 89999999999999
Q ss_pred EEEEeccCCC----CCCCCccccEEEechhhHHHHHHHHhcCCCCce
Q 047470 433 AAIFLTDTPD----IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKV 475 (757)
Q Consensus 433 ~g~i~~~~~~----~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 475 (757)
.|+|++++.. .......+|++.|+..+|+.|++|+++.. +++
T Consensus 78 ~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~-~~~ 123 (126)
T cd02120 78 AGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTS-NPT 123 (126)
T ss_pred cEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCC-Ccc
Confidence 9999998775 22224679999999999999999999876 443
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.9e-09 Score=90.26 Aligned_cols=80 Identities=33% Similarity=0.602 Sum_probs=57.8
Q ss_pred eEEEEeCCCCCCCc-cccHHHHHHHhhcccCCC-CCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEeccccc
Q 047470 38 TYIIHMDHSHKPSA-FLTHESWHLSILKSASYP-ADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGK 115 (757)
Q Consensus 38 ~yIV~l~~~~~~~~-~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 115 (757)
+|||.|++...... ...+.+++.+++.+.... ...+.++.+.|...||||+++++++++++|+++|+|++|+||+.++
T Consensus 1 ~YIV~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~ 80 (82)
T PF05922_consen 1 RYIVVFKDDASAASSFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVS 80 (82)
T ss_dssp EEEEEE-TTSTHHCHHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEE
T ss_pred CEEEEECCCCCcchhHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEe
Confidence 69999999975544 566777777554431100 0127899999998899999999999999999999999999999887
Q ss_pred cc
Q 047470 116 LF 117 (757)
Q Consensus 116 ~~ 117 (757)
++
T Consensus 81 l~ 82 (82)
T PF05922_consen 81 LH 82 (82)
T ss_dssp E-
T ss_pred cC
Confidence 53
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-08 Score=87.40 Aligned_cols=88 Identities=22% Similarity=0.455 Sum_probs=71.3
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--------CCCCCcc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--------IDSDEYY 449 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--------~~~~~~~ 449 (757)
...|+++.........|.+......+++|||+||+||. |.|.+|..+++.+|| .|+|++|... .......
T Consensus 6 ~~~~lV~~~~~~~~~~~~~~~~~~~~~~gkIvlv~rg~-~~~~~k~~~a~~~GA-~gvIi~~~~~~~~~~~~~~~~~~~~ 83 (101)
T PF02225_consen 6 VTGPLVPAGNGIDEGDCCPSDYNGSDVKGKIVLVERGS-CSFDDKVRNAQKAGA-KGVIIYNPPPNNGSMIDSEDPDPID 83 (101)
T ss_dssp EEEEEEEETTEEECCHHHHHHTSTSTCTTSEEEEESTS-SCHHHHHHHHHHTTE-SEEEEE-TSCSCTTTTCEBTTTSTB
T ss_pred EEEEEEEecCCCCcccccccccCCccccceEEEEecCC-CCHHHHHHHHHHcCC-EEEEEEeCCccccCcccccCCCCcE
Confidence 35677755544456678888899999999999999999 999999999999999 9999999211 2344678
Q ss_pred ccEEEechhhHHHHHHHH
Q 047470 450 IPSLILPTSAGTSIRQYV 467 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~ 467 (757)
+|+++|+..+|+.|++|+
T Consensus 84 iP~v~I~~~~g~~L~~~i 101 (101)
T PF02225_consen 84 IPVVFISYEDGEALLAYI 101 (101)
T ss_dssp SEEEEE-HHHHHHHHHHH
T ss_pred EEEEEeCHHHHhhhhccC
Confidence 999999999999999985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.3e-07 Score=84.03 Aligned_cols=91 Identities=18% Similarity=0.298 Sum_probs=75.2
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC------C-CC--CCc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD------I-DS--DEY 448 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~------~-~~--~~~ 448 (757)
-..++++... ...+.|.+..+...+++|||+||+||. |.+.+|..+++.+|| .++|++|+.. . .. ...
T Consensus 17 i~~~lv~~~~-~~~~gC~~~~~~~~~~~GkIvLv~rg~-c~f~~K~~~A~~aGA-~avIi~n~~~~~~~~~~~~~~~~~~ 93 (122)
T cd04816 17 VTAPLVPLDP-ERPAGCDASDYDGLDVKGAIVLVDRGG-CPFADKQKVAAARGA-VAVIVVNNSDGGGTAGTLGAPNIDL 93 (122)
T ss_pred cEEEEEEcCC-CCccCCCccccCCCCcCCeEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEeCCCCccccccccCCCCCC
Confidence 3556777542 234789998888889999999999999 999999999999999 9999998765 1 11 234
Q ss_pred cccEEEechhhHHHHHHHHhcCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
.+|.++|+..+|+.|++++.++.
T Consensus 94 ~iP~~~Is~~~G~~l~~~l~~g~ 116 (122)
T cd04816 94 KVPVGVITKAAGAALRRRLGAGE 116 (122)
T ss_pred eeeEEEEcHHHHHHHHHHHcCCC
Confidence 59999999999999999998865
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.2e-07 Score=83.62 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=73.1
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCC-C-----C--CCcc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDI-D-----S--DEYY 449 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~-~-----~--~~~~ 449 (757)
..+|++.... ...|.+..+.+.+++|||+|++||. |+|.+|..+++.+|| .++|++|+... . . ....
T Consensus 20 ~~~~~~~~~~---~~gC~~~~~~~~~l~gkIaLV~RG~-CsF~~K~~~Aq~aGA-~aVII~nn~~~~~~~~~~~~~~~v~ 94 (120)
T cd02129 20 TLLPLRNLTS---SVLCSASDVPPGGLKGKAVVVMRGN-CTFYEKARLAQSLGA-EGLLIVSRERLVPPSGNRSEYEKID 94 (120)
T ss_pred cceeeecCCC---cCCCCccccCccccCCeEEEEECCC-cCHHHHHHHHHHCCC-CEEEEEECCCCCCCCCCCCCCcCCc
Confidence 4566665443 5779998888889999999999999 999999999999999 99999998761 1 1 2346
Q ss_pred ccEEEechhhHHHHHHHHhcC
Q 047470 450 IPSLILPTSAGTSIRQYVTGK 470 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~ 470 (757)
||+++|+..+|+.|++.+.+.
T Consensus 95 IP~v~Is~~dG~~i~~~l~~~ 115 (120)
T cd02129 95 IPVALLSYKDMLDIQQTFGDS 115 (120)
T ss_pred ccEEEEeHHHHHHHHHHhccC
Confidence 899999999999999988753
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-07 Score=101.55 Aligned_cols=153 Identities=20% Similarity=0.218 Sum_probs=97.2
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
...|..+++|+++.|+|.|+|++..||++... ....+..++...- .++
T Consensus 23 ~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~-------------------------~~~~~s~d~~~~~-------~~p 70 (431)
T KOG3525|consen 23 QNAWCKGYTGTRVSVTILDDGLECSHPDLRNN-------------------------YDPLGSYDVNRHD-------NDP 70 (431)
T ss_pred eeccccCCCCCceEEEEeeccccccCcccccc-------------------------cCcceeEeeecCC-------CCc
Confidence 46899999999999999999999999999842 1122333332210 112
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh-CCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-DGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~-~g~d 289 (757)
.+..+......|||-|++-.+....+ ... ..|+++++++..++++.. ..++...+...... .-++
T Consensus 71 ~~~~~~~~~~~~g~~Ca~~~a~~~~~--~~C------~vg~~~~~~~~g~~~l~~------~v~~~~~~~~~~~~~~~~d 136 (431)
T KOG3525|consen 71 EPRCDGTNENKHGTRCAGCVAARANN--LTC------GVGVAYNATIGGIRMLAG------CVSDAVEAPSLGFGPCHID 136 (431)
T ss_pred ccccCCCCccccCCCCCcccccccCC--CcC------CCCcccCccccceeeeee------ecccceecccccCCCCCce
Confidence 22223334688999999999987522 122 259999999999999872 22233333222222 3578
Q ss_pred EEEeCCCCCCCCC----ccCHHHHHHHH-----HHhCCcEEEEecCCCC
Q 047470 290 IMSLSLGFDQTPY----FNDVIAIASLS-----AIENGIVVVCAAGNDG 329 (757)
Q Consensus 290 VIn~SlG~~~~~~----~~~~~~~a~~~-----a~~~Gi~vV~AAGN~g 329 (757)
+-+.|||...... .......+... ...+|-+.|+|.||.|
T Consensus 137 i~scsw~pddd~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg 185 (431)
T KOG3525|consen 137 IYSCSWGPDDDGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGG 185 (431)
T ss_pred eecCcCCcccCCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCcc
Confidence 9999999876111 11122222222 2367889999999988
|
|
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.9e-07 Score=84.17 Aligned_cols=82 Identities=11% Similarity=0.149 Sum_probs=69.8
Q ss_pred CCCcccccCCCC--CCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----C---CCC-CccccEEEech
Q 047470 388 DVNKSICHLGSL--NPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----I---DSD-EYYIPSLILPT 457 (757)
Q Consensus 388 ~~~~~~c~~~~~--~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~---~~~-~~~~p~~~i~~ 457 (757)
....+.|.+... ++.++.|+|+|++||. |.|.+|..+++.+|| .++|++|+.. . ..+ ...+|.++|+.
T Consensus 41 ~~~~~gC~~~~~~~~~~~~~g~IaLV~RG~-C~F~~K~~nA~~aGA-~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~ 118 (138)
T cd02122 41 PNDHYGCDPDTRFPIPPNGEPWIALIQRGN-CTFEEKIKLAAERNA-SAVVIYNNPGTGNETVKMSHPGTGDIVAIMITN 118 (138)
T ss_pred CCCcCCCCCCccccCCccCCCeEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEECCCCCCceeeccCCCCCcceEEEEcH
Confidence 345678998776 6788999999999999 999999999999999 9999999874 1 111 24689999999
Q ss_pred hhHHHHHHHHhcCC
Q 047470 458 SAGTSIRQYVTGKN 471 (757)
Q Consensus 458 ~~g~~l~~~~~~~~ 471 (757)
.+|+.|++++.++.
T Consensus 119 ~~G~~l~~~l~~G~ 132 (138)
T cd02122 119 PKGMEILELLERGI 132 (138)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998876
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=98.50 E-value=6.7e-07 Score=80.96 Aligned_cols=84 Identities=19% Similarity=0.280 Sum_probs=68.4
Q ss_pred cccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-----C---CCC----CccccEEEechh
Q 047470 391 KSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-----I---DSD----EYYIPSLILPTS 458 (757)
Q Consensus 391 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~-----~---~~~----~~~~p~~~i~~~ 458 (757)
.+.|.+.. ...+++|||+|++||. |.|.+|..+++.+|| .++|++|+.. . ..+ ...||+++|+..
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~-C~F~~K~~~Aq~aGA-~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~ 97 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGG-CSFLTKAINAQKAGA-LAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGK 97 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEECCCCccccceEecCCCCCCCceEEEEEecHH
Confidence 46798644 3568999999999999 999999999999999 9999998753 1 122 246999999999
Q ss_pred hHHHHHHHHhcCCCCceEEE
Q 047470 459 AGTSIRQYVTGKNKSKVKSM 478 (757)
Q Consensus 459 ~g~~l~~~~~~~~~~~~~~i 478 (757)
+|+.|++.+..+. .+.+.|
T Consensus 98 dG~~L~~~l~~g~-~~~~~~ 116 (118)
T cd02127 98 NGYMIRKTLERLG-LPYAII 116 (118)
T ss_pred HHHHHHHHHHcCC-ceEEee
Confidence 9999999999877 444433
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.4e-06 Score=78.32 Aligned_cols=87 Identities=16% Similarity=0.261 Sum_probs=70.7
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCC-C-----CCC--CCcc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP-D-----IDS--DEYY 449 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~-~-----~~~--~~~~ 449 (757)
..-++++.. ...|.+..+ +.+++|||+|++||. |.|.+|..++...|| .++|++|+. . ... +...
T Consensus 22 ~~g~lv~~~----~~gC~~~~~-~~~~~gkIvlv~rg~-c~f~~K~~~A~~aGA-~~vIv~n~~~~~~~~~~~~~~~~~~ 94 (122)
T cd02130 22 VTGPLVVVP----NLGCDAADY-PASVAGNIALIERGE-CPFGDKSALAGAAGA-AAAIIYNNVPAGGLSGTLGEPSGPY 94 (122)
T ss_pred cEEEEEEeC----CCCCCcccC-CcCCCCEEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEECCCCcccccccCCCCCCE
Confidence 345666643 356887655 357999999999999 999999999999999 999999887 3 111 2356
Q ss_pred ccEEEechhhHHHHHHHHhcCC
Q 047470 450 IPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
+|.++|+..+|+.|+..+.+++
T Consensus 95 Ip~v~Is~~~G~~L~~~l~~g~ 116 (122)
T cd02130 95 VPTVGISQEDGKALVAALANGG 116 (122)
T ss_pred eeEEEecHHHHHHHHHHHhcCC
Confidence 9999999999999999998876
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.44 E-value=4.1e-06 Score=75.54 Aligned_cols=80 Identities=14% Similarity=0.227 Sum_probs=58.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeC--------CCC----------c-EEEEecCeEEEeccceeEEEEEEEEEcc----C
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEF--------PAG----------M-NIRIEPSTLKFTQKYQLLDFALSVEIDR----E 729 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~--------p~g----------~-~v~v~p~~~~~~~~~~~~~~~vt~~~~~----~ 729 (757)
..+++.+|+|.|+.+.+|+++... ..| . .+...|..++++ +|++++|+|+|+.+. .
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV~-ag~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTVP-AGQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEEC-CCCEEEEEEEEEehhcCCcc
Confidence 588999999999999999998661 111 1 677788899998 899999999999965 4
Q ss_pred CCceEEEEEEEEECCcc-EEEEEEE
Q 047470 730 SPRVSYGYLKWIDQYNH-TVSSPVV 753 (757)
Q Consensus 730 ~~~~~~G~~~~~~~~~~-~v~~P~~ 753 (757)
...+++|+|.|+++..+ .+++||.
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 58999999999998564 9999984
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-06 Score=80.02 Aligned_cols=79 Identities=16% Similarity=0.337 Sum_probs=66.6
Q ss_pred CcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----CC----CCCccccEEEechhhHH
Q 047470 390 NKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----ID----SDEYYIPSLILPTSAGT 461 (757)
Q Consensus 390 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~~----~~~~~~p~~~i~~~~g~ 461 (757)
..+.|.+..+. .+++|||+||+|+. |.+.+|..++...|| .|+|++++.. .. .....+|+++|+..+|+
T Consensus 26 ~~~~C~~~~~~-~~v~GkIvL~~rg~-c~f~~k~~~a~~aGA-~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~ 102 (118)
T cd04818 26 NTDGCTAFTNA-AAFAGKIALIDRGT-CNFTVKVLNAQNAGA-IAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGD 102 (118)
T ss_pred cccccCCCCcC-CCCCCEEEEEECCC-CCHHHHHHHHHHCCC-eEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHH
Confidence 45679888774 46999999999999 999999999999999 9999987765 11 12346999999999999
Q ss_pred HHHHHHhcCC
Q 047470 462 SIRQYVTGKN 471 (757)
Q Consensus 462 ~l~~~~~~~~ 471 (757)
.|++|++.+.
T Consensus 103 ~l~~~l~~g~ 112 (118)
T cd04818 103 ALKAALAAGG 112 (118)
T ss_pred HHHHHHhcCC
Confidence 9999999765
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.2e-06 Score=77.79 Aligned_cols=89 Identities=13% Similarity=0.200 Sum_probs=69.2
Q ss_pred eeeEEccC--CCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--C---CCCCccccE
Q 047470 380 APLYYGKN--DVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--I---DSDEYYIPS 452 (757)
Q Consensus 380 ~p~~~~~~--~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--~---~~~~~~~p~ 452 (757)
+|++-..- ....+.|.+...+..+++|||+|++||. |.|.+|..++..+|| .++|++|+.. . ..+...+|.
T Consensus 28 ~p~~~~~~~~~~~~~gC~~~~~~~~~~~g~IaLv~rg~-c~f~~K~~nA~~aGA-~aviiyn~~~~~~~~~~~~~~~~~~ 105 (129)
T cd02124 28 LPLWALSLDTSVADDACQPLPDDTPDLSGYIVLVRRGT-CTFATKAANAAAKGA-KYVLIYNNGSGPTDQVGSDADSIIA 105 (129)
T ss_pred ceEEEeecccCCCcccCcCCCcccccccCeEEEEECCC-CCHHHHHHHHHHcCC-cEEEEEECCCCcccccCCCCcceee
Confidence 56554432 3456789987666668999999999999 999999999999999 9999998775 1 122233555
Q ss_pred EEechhhHHHHHHHHhcCC
Q 047470 453 LILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 453 ~~i~~~~g~~l~~~~~~~~ 471 (757)
+.+ ..+|+.|++.+.++.
T Consensus 106 ~~~-~~~G~~l~~~l~~G~ 123 (129)
T cd02124 106 AVT-PEDGEAWIDALAAGS 123 (129)
T ss_pred EEe-HHHHHHHHHHHhcCC
Confidence 555 999999999998765
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.3e-06 Score=80.87 Aligned_cols=71 Identities=17% Similarity=0.251 Sum_probs=60.8
Q ss_pred CCCCCCccceEEEEeCCCCCc-----hhHHHHHHHHcCCeEEEEeccCC--C-----CCCC---CccccEEEechhhHHH
Q 047470 398 SLNPDEVTGKVVFCDNSNRID-----TYSQMEEVDRAGAYAAIFLTDTP--D-----IDSD---EYYIPSLILPTSAGTS 462 (757)
Q Consensus 398 ~~~~~~~~gkivl~~~g~~~~-----~~~k~~~~~~~Ga~~g~i~~~~~--~-----~~~~---~~~~p~~~i~~~~g~~ 462 (757)
++.+.+++|||+|++||. |. |.+|..++..+|| +|+|++|+. . ...+ ...||+++|++.+|+.
T Consensus 49 d~~~~d~~GkIaLI~RG~-c~~~~~~f~~Kv~~A~~aGA-~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~ 126 (139)
T cd04817 49 SYICGGMAGKICLIERGG-NSKSVYPEIDKVKACQNAGA-IAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQA 126 (139)
T ss_pred cccCCCcCccEEEEECCC-CCCCcccHHHHHHHHHHCCC-eEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHH
Confidence 455668999999999999 99 9999999999999 999999998 3 1222 3479999999999999
Q ss_pred HHHHHhcC
Q 047470 463 IRQYVTGK 470 (757)
Q Consensus 463 l~~~~~~~ 470 (757)
|+..+.+.
T Consensus 127 L~~~l~~~ 134 (139)
T cd04817 127 LLAALGQS 134 (139)
T ss_pred HHHHhcCC
Confidence 99988654
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.6e-06 Score=79.95 Aligned_cols=79 Identities=19% Similarity=0.359 Sum_probs=67.4
Q ss_pred cccccCCC--CCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-----CC-----CCCccccEEEechh
Q 047470 391 KSICHLGS--LNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-----ID-----SDEYYIPSLILPTS 458 (757)
Q Consensus 391 ~~~c~~~~--~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~-----~~-----~~~~~~p~~~i~~~ 458 (757)
...|.++. +...+++|||+||+|+. |.+.+|..++...|| +|+|++++.. .. .....+|++.|+..
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~-~~~~~k~~~a~~~GA-~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~ 107 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGG-CSFSEKVKNAQKAGA-KAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYA 107 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCC-cCHHHHHHHHHHCCC-EEEEEEECCCCcccccccccCCCCCCcEeEEEeCHH
Confidence 34598877 77889999999999999 999999999999999 9999988764 11 13457999999999
Q ss_pred hHHHHHHHHhcCC
Q 047470 459 AGTSIRQYVTGKN 471 (757)
Q Consensus 459 ~g~~l~~~~~~~~ 471 (757)
+|+.|++|+.++.
T Consensus 108 ~g~~l~~~~~~~~ 120 (126)
T cd00538 108 DGEALLSLLEAGK 120 (126)
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998755
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=77.98 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=64.3
Q ss_pred CcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC------CC----CCCccccEEEechhh
Q 047470 390 NKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD------ID----SDEYYIPSLILPTSA 459 (757)
Q Consensus 390 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~------~~----~~~~~~p~~~i~~~~ 459 (757)
..+.|.+. +.++++|||+|++||. |.|.+|..+++..|| .++|++|+.. +. .....+|+++|+..+
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~-CsF~~K~~nAq~aGA-~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~ 101 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGG-CGFLDKVMWAQRRGA-KAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTS 101 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCC-CCHHHHHHHHHHCCC-cEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHH
Confidence 35789766 5688999999999999 999999999999999 9999998664 11 123468999999999
Q ss_pred HHHHHHHHhcC
Q 047470 460 GTSIRQYVTGK 470 (757)
Q Consensus 460 g~~l~~~~~~~ 470 (757)
+++|+.++...
T Consensus 102 g~~L~~l~~~~ 112 (117)
T cd04813 102 YHLLSSLLPKS 112 (117)
T ss_pred HHHHHHhcccc
Confidence 99999887653
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.8e-06 Score=98.97 Aligned_cols=92 Identities=20% Similarity=0.424 Sum_probs=56.6
Q ss_pred eeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCC-cEEEeCCCCCC-----CCCccCHHHHHHHHHHhCCcEEE
Q 047470 249 RGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGV-DIMSLSLGFDQ-----TPYFNDVIAIASLSAIENGIVVV 322 (757)
Q Consensus 249 ~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~-dVIn~SlG~~~-----~~~~~~~~~~a~~~a~~~Gi~vV 322 (757)
.-+||+|+|..|-.-. .....+..|+++-..+=+ -+|-.||+... ++.+-+.++...+.|..+|+.++
T Consensus 289 ~A~AP~A~I~lvvap~------~~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~ 362 (1174)
T COG4934 289 HAMAPKANIDLVVAPN------PLVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIF 362 (1174)
T ss_pred hccCccCceEEEEcCC------CceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEE
Confidence 5799999999886522 112222223222222111 33445666543 12234556666667889999999
Q ss_pred EecCCCC-CCC--------CcccCCCceEEecc
Q 047470 323 CAAGNDG-FPR--------SIHNGAPWITTVGA 346 (757)
Q Consensus 323 ~AAGN~g-~~~--------~~~~~ap~~itVga 346 (757)
+|+|.+| ... ..++.+|++++||.
T Consensus 363 AASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 363 AASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred EecccccccCCCcccceeecccCCCccEEeecC
Confidence 9999998 332 23467899999997
|
|
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.6e-06 Score=76.56 Aligned_cols=79 Identities=18% Similarity=0.287 Sum_probs=64.3
Q ss_pred cccccCCCCC--CC----CccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--CC-------------CCCcc
Q 047470 391 KSICHLGSLN--PD----EVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--ID-------------SDEYY 449 (757)
Q Consensus 391 ~~~c~~~~~~--~~----~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--~~-------------~~~~~ 449 (757)
.+.|.+.... +. ...++|+|++||. |.|.+|..+++.+|| .++|++|+.. +. .+...
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~-C~F~~K~~~Aq~aGA-~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~ 99 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGG-CFFTLKAWNAQQAGA-AAVLVADNVDEPLLTMDTPEESGSADYIEKIT 99 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCC-cCHHHHHHHHHHCCC-cEEEEEECCCCccccccCcccccccccCCCce
Confidence 4679865542 22 3788999999999 999999999999999 9999999865 11 01235
Q ss_pred ccEEEechhhHHHHHHHHhcCC
Q 047470 450 IPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
||+++|+..+|+.|++.+.++.
T Consensus 100 IP~v~Is~~~G~~L~~~l~~g~ 121 (127)
T cd02125 100 IPSALITKAFGEKLKKAISNGE 121 (127)
T ss_pred EeEEEECHHHHHHHHHHHhcCC
Confidence 8999999999999999998876
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.9e-06 Score=79.43 Aligned_cols=85 Identities=13% Similarity=0.353 Sum_probs=68.7
Q ss_pred eeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----CC-C-C----Cc
Q 047470 379 DAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----ID-S-D----EY 448 (757)
Q Consensus 379 ~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~~-~-~----~~ 448 (757)
..+++... ..+.|.+.. .+++|||+|++||. |.|.+|..+++.+|| .++|++|+.. +. . . ..
T Consensus 39 ~~~lv~~~---~~~gC~~~~---~~~~g~IvLV~RG~-C~F~~K~~nA~~aGA-~avIv~n~~~~~~~~~~~~~~~~~~~ 110 (139)
T cd02132 39 KTRAVLAN---PLDCCSPST---SKLSGSIALVERGE-CAFTEKAKIAEAGGA-SALLIINDQEELYKMVCEDNDTSLNI 110 (139)
T ss_pred EEEEEECC---cccccCCCC---cccCCeEEEEECCC-CCHHHHHHHHHHcCC-cEEEEEECCCcccccccCCCCCCCCC
Confidence 44554443 257798754 47999999999999 999999999999999 9999998765 11 1 1 34
Q ss_pred cccEEEechhhHHHHHHHHhcCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
.||+++|+..+|+.|++++.++.
T Consensus 111 ~IP~v~Is~~~G~~L~~~l~~g~ 133 (139)
T cd02132 111 SIPVVMIPQSAGDALNKSLDQGK 133 (139)
T ss_pred cEeEEEecHHHHHHHHHHHHcCC
Confidence 79999999999999999998876
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=98.30 E-value=3e-06 Score=77.92 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=64.9
Q ss_pred cccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--------C---CC-----CCccccEEE
Q 047470 391 KSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--------I---DS-----DEYYIPSLI 454 (757)
Q Consensus 391 ~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--------~---~~-----~~~~~p~~~ 454 (757)
.+.|.+... +.+++|||+|++||. |.|.+|..+++.+|| .++|++|+.. + .. +...||+++
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~-C~f~~K~~~Aq~aGA-~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~ 103 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGD-CMFVEKARRVQKAGA-IGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVF 103 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCC-CcHHHHHHHHHHCCC-cEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEE
Confidence 467986554 567999999999999 999999999999999 9999997543 0 11 234689999
Q ss_pred echhhHHHHHHHHhcCC
Q 047470 455 LPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 455 i~~~~g~~l~~~~~~~~ 471 (757)
|+..+|+.|+++++.+.
T Consensus 104 I~~~dG~~L~~~l~~~~ 120 (126)
T cd02126 104 LFSKEGSKLLAAIKEHQ 120 (126)
T ss_pred EEHHHHHHHHHHHHhCC
Confidence 99999999999998765
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.9e-06 Score=79.86 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=67.4
Q ss_pred cccccCCCCCC---CCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-----CCCC-----CccccEEEech
Q 047470 391 KSICHLGSLNP---DEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-----IDSD-----EYYIPSLILPT 457 (757)
Q Consensus 391 ~~~c~~~~~~~---~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~-----~~~~-----~~~~p~~~i~~ 457 (757)
.+.|.+....+ .++.|||+|++||. |.|.+|..+++.+|| .++|++|+.. +..+ ...||+++|+.
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~-CtF~~Kv~nAq~aGA-~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~ 127 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGN-CSFETKVRNAQRAGY-KAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGK 127 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCC-CCHHHHHHHHHHCCC-CEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeH
Confidence 56898766644 88999999999999 999999999999999 9999999864 2221 34799999999
Q ss_pred hhHHHHHHHHhcCC
Q 047470 458 SAGTSIRQYVTGKN 471 (757)
Q Consensus 458 ~~g~~l~~~~~~~~ 471 (757)
.+|+.|+.++...+
T Consensus 128 ~dg~~L~~~l~~~~ 141 (153)
T cd02123 128 STGEILKKYASYEK 141 (153)
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998765
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=98.01 E-value=7.2e-05 Score=68.98 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=69.0
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCC--chhHHHHHHHHcCCeEEEEeccCCC--CC---------
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRI--DTYSQMEEVDRAGAYAAIFLTDTPD--ID--------- 444 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~--~~~~k~~~~~~~Ga~~g~i~~~~~~--~~--------- 444 (757)
.+.+++|.+. +.+.++...+++|||++++++. | .+.+|..++...|| +|+|++|+.. ..
T Consensus 23 ~~~~lV~~g~------G~~~d~~~~~v~GkIvlv~~g~-~~~~~~~k~~~A~~~GA-~avi~~~~~~g~~~~~~~~~~~~ 94 (127)
T cd04819 23 AKGEPVDAGY------GLPKDFDGLDLEGKIAVVKRDD-PDVDRKEKYAKAVAAGA-AAFVVVNTVPGVLPATGDEGTED 94 (127)
T ss_pred eeEEEEEeCC------CCHHHcCCCCCCCeEEEEEcCC-CchhHHHHHHHHHHCCC-EEEEEEeCCCCcCcccccccccC
Confidence 5778888664 3333444667999999999999 8 88999999999999 9999998765 11
Q ss_pred CCCccccEEEechhhHHHHHHHHhcCC
Q 047470 445 SDEYYIPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
.....+|++.|+.+||+.|...++.+.
T Consensus 95 ~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 95 GPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred CCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 112469999999999999999998754
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0027 Score=61.56 Aligned_cols=85 Identities=16% Similarity=0.244 Sum_probs=64.7
Q ss_pred ceeeeEEccCCCCcccccCCCC-----CCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----C-----
Q 047470 378 TDAPLYYGKNDVNKSICHLGSL-----NPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----I----- 443 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~-----~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----~----- 443 (757)
.+.+++|.+. |...++ ...+++|||+|+++|. |.+.+|..+|...|| +|+|++++.. .
T Consensus 29 v~g~lVyvn~------G~~~Df~~L~~~gv~v~GkIvLvr~G~-~~~~~Kv~~A~~~GA-~gvIiy~Dp~d~~~~~~~~~ 100 (183)
T cd02128 29 VTGKLVYANY------GRKKDFEDLQSVGVSVNGSVVLVRAGK-ISFAEKVANAEKLGA-VGVLIYPDPADFPIDPSETA 100 (183)
T ss_pred eEEEEEEcCC------CCHHHHHHHHhcCCCCCCeEEEEECCC-CCHHHHHHHHHHCCC-EEEEEecCHHHcCcccCcce
Confidence 4677888643 332222 2567999999999999 999999999999999 9999998841 0
Q ss_pred ------------------------C-C----CCccccEEEechhhHHHHHHHHhcC
Q 047470 444 ------------------------D-S----DEYYIPSLILPTSAGTSIRQYVTGK 470 (757)
Q Consensus 444 ------------------------~-~----~~~~~p~~~i~~~~g~~l~~~~~~~ 470 (757)
. . ..-.||++-|+..+++.|+..+.-.
T Consensus 101 ~~g~~~~~~GDplTPG~ps~~~~~~~~~~~~~lP~IPs~PIS~~da~~lL~~l~G~ 156 (183)
T cd02128 101 LFGHVHLGTGDPYTPGFPSFNHTQFPPSQSSGLPNIPAQTISAAAAAKLLSKMGGP 156 (183)
T ss_pred eecceeccCCCcCCCCCccccccccCcccccCCCCCCEeccCHHHHHHHHHHcCCC
Confidence 0 0 0124889999999999999988643
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0032 Score=58.59 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=58.0
Q ss_pred CCCCCccceEEEEeCCCCC------chhHH-------HHHHHHcCCeEEEEeccCCC---------CC---CCCccccEE
Q 047470 399 LNPDEVTGKVVFCDNSNRI------DTYSQ-------MEEVDRAGAYAAIFLTDTPD---------ID---SDEYYIPSL 453 (757)
Q Consensus 399 ~~~~~~~gkivl~~~g~~~------~~~~k-------~~~~~~~Ga~~g~i~~~~~~---------~~---~~~~~~p~~ 453 (757)
+...+++|||++++++. | .+..| ...+...|| +++|++|... .. .....||++
T Consensus 33 ~~~~~v~GKIvlv~~~~-~~~~~~~~~~~k~~~r~~~~~~A~~~GA-~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v 110 (134)
T cd04815 33 APAGAVKGKIVFFNQPM-VRTQTGSGYGPTVAYRRRGAVEAAKKGA-VAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAA 110 (134)
T ss_pred cchhhcCCeEEEecCCc-cccCchhhcCchhhhhhHHHHHHHhCCC-EEEEEEecCcccCCCCcCCccccCCCCCCCCEE
Confidence 34668999999999998 9 88888 688999999 9999998531 11 112459999
Q ss_pred EechhhHHHHHHHHhcCC
Q 047470 454 ILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~ 471 (757)
.|+.+++..|...++.+.
T Consensus 111 ~is~ed~~~L~r~l~~g~ 128 (134)
T cd04815 111 AISVEDADMLERLAARGK 128 (134)
T ss_pred EechhcHHHHHHHHhCCC
Confidence 999999999999998765
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0032 Score=58.65 Aligned_cols=63 Identities=24% Similarity=0.279 Sum_probs=54.3
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCC------------------chhHHHHHHHHcCCeEEEEecc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRI------------------DTYSQMEEVDRAGAYAAIFLTD 439 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~------------------~~~~k~~~~~~~Ga~~g~i~~~ 439 (757)
...|+||.+.......|...++...|++||||++.++. | .+..|..++...|| +|+|+++
T Consensus 20 ~~aelVfvGyGi~a~~~~~dDYag~DVkGKIVlv~~g~-P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA-~gvIii~ 97 (142)
T cd04814 20 KDAPLVFVGYGIKAPELSWDDYAGLDVKGKVVVVLRND-PQGEPGAGDFGGKAMTYYGRWTYKYEEAARHGA-AGVLIVH 97 (142)
T ss_pred cceeeEEecCCcCCCCCChhhcCCCCCCCcEEEEEcCC-CCcccccccccccccccccCHHHHHHHHHHCCC-cEEEEEe
Confidence 57889998865556779888999999999999999887 6 47789999999999 9999999
Q ss_pred CCC
Q 047470 440 TPD 442 (757)
Q Consensus 440 ~~~ 442 (757)
+..
T Consensus 98 ~~~ 100 (142)
T cd04814 98 ELA 100 (142)
T ss_pred CCC
Confidence 854
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0051 Score=56.96 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=53.1
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCc------------hhHHHHHHHHcCCeEEEEeccCC
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRID------------TYSQMEEVDRAGAYAAIFLTDTP 441 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~------------~~~k~~~~~~~Ga~~g~i~~~~~ 441 (757)
...++||.+.......|...++...+++|||||+.++. |. +..|..++...|| +|+|++++.
T Consensus 22 v~gelVfvGyG~~~~~~~~~Dy~~iDVkGKIVlv~~g~-p~~~~~~~~~~~~~~~~K~~~A~~~GA-~aVIi~~d~ 95 (137)
T cd04820 22 VEAPLVFVGYGLVAPELGHDDYAGLDVKGKIVVVLSGG-PAGIPSEEGAHAHSSNEKARYAAKAGA-IGMITLTTP 95 (137)
T ss_pred ceEeEEEecCCcCccCcCHhhccCCCCCCeEEEEEcCC-CCccccccccccccHHHHHHHHHHCCC-eEEEEEeCC
Confidence 47788998876566788888888899999999999987 63 6689999999999 999999984
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.014 Score=55.08 Aligned_cols=88 Identities=16% Similarity=0.210 Sum_probs=65.4
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCC-----------------CCchhHHHHHHHHcCCeEEEEeccC
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSN-----------------RIDTYSQMEEVDRAGAYAAIFLTDT 440 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~-----------------~~~~~~k~~~~~~~Ga~~g~i~~~~ 440 (757)
.+.|+||.+.......|...++...+++|||||+.++. .|.+..|..++...|| +|+|++++
T Consensus 20 vtg~lVfvGyGi~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA-~aVIv~~d 98 (151)
T cd04822 20 VTAPVVFAGYGITAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGA-AAVIVVNG 98 (151)
T ss_pred ceEeEEEecCCcCccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCC-eEEEEEeC
Confidence 46788988876666778888888899999999998763 1567889999999999 99999998
Q ss_pred CC-CCCCCccc------cEEEechhhHHHHHHH
Q 047470 441 PD-IDSDEYYI------PSLILPTSAGTSIRQY 466 (757)
Q Consensus 441 ~~-~~~~~~~~------p~~~i~~~~g~~l~~~ 466 (757)
.. ........ ..++++....+.+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (151)
T cd04822 99 PNSHSGDADRLPRFGGTAPQRVDIAAADPWFTA 131 (151)
T ss_pred CcccCcccccccccCccceEEechHHHHHHhhh
Confidence 76 21111111 2566777776666654
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.066 Score=47.05 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=63.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEECCccEEEEEE
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQYNHTVSSPV 752 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~~v~~P~ 752 (757)
..+.+.+++|.|.....|++.........++++|..-.+. +|++.++.|+|.+.. ..+.+.+.|.++- .+..+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l~-PG~~~~~~V~~~~~~-~~g~~~~~l~i~~-e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFLA-PGESVELEVTFSPTK-PLGDYEGSLVITT-EGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEEC-CCCEEEEEEEEEeCC-CCceEEEEEEEEE-CCeEEEEEE
Confidence 6677889999999999999876543345567777665555 899999999999643 4567899999988 667899998
Q ss_pred EEEeC
Q 047470 753 VAIKT 757 (757)
Q Consensus 753 ~v~~~ 757 (757)
-+..+
T Consensus 98 ~a~~~ 102 (102)
T PF14874_consen 98 KAEVT 102 (102)
T ss_pred EEEEC
Confidence 87754
|
|
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.077 Score=57.81 Aligned_cols=69 Identities=19% Similarity=0.305 Sum_probs=58.0
Q ss_pred CCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----------CCCCCccccEEEechhhHHHHHHHHhcC
Q 047470 401 PDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----------IDSDEYYIPSLILPTSAGTSIRQYVTGK 470 (757)
Q Consensus 401 ~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----------~~~~~~~~p~~~i~~~~g~~l~~~~~~~ 470 (757)
...+.+|++++.||. |.|.+|...++++|| .++++.|+.. .......||+++|++++++.+..-..++
T Consensus 91 ~~kl~~~~~~v~RGn-C~Ft~Ka~~Aq~aGA-saLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~ 168 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGN-CSFTEKAKLAQAAGA-SALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSN 168 (541)
T ss_pred CccccceeEEEeccc-ceeehhhhhhhhcCc-eEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccC
Confidence 456899999999999 999999999999999 9999999954 1123467999999999999998755554
Q ss_pred C
Q 047470 471 N 471 (757)
Q Consensus 471 ~ 471 (757)
.
T Consensus 169 ~ 169 (541)
T KOG2442|consen 169 D 169 (541)
T ss_pred C
Confidence 4
|
|
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.085 Score=53.11 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=46.0
Q ss_pred ceeeeEEccCCCCcccccCCCCC-----CCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLN-----PDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~-----~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
...++||.+- |...+++ ..+++|||+|+++|. +.+.+|..+|...|| +|+|++++..
T Consensus 45 v~g~lVyvny------G~~~D~~~L~~~gvdv~GKIvLvr~G~-~~~~~Kv~~A~~~GA-~gVIiy~Dp~ 106 (220)
T cd02121 45 VTAELVYANY------GSPEDFEYLEDLGIDVKGKIVIARYGG-IFRGLKVKNAQLAGA-VGVIIYSDPA 106 (220)
T ss_pred ceEEEEEcCC------CcHHHHHHHhhcCCCCCCeEEEEECCC-ccHHHHHHHHHHcCC-EEEEEEeCch
Confidence 4677888653 5544332 568999999999998 888899999999999 9999999843
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.11 Score=48.48 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=35.7
Q ss_pred CCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCC
Q 047470 402 DEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP 441 (757)
Q Consensus 402 ~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~ 441 (757)
-+++|||+|++.|. ..+-.|..+|...|| +|+|+|.+.
T Consensus 37 V~v~GkIvi~RyG~-~~RG~Kv~~A~~~GA-~GviIYsDP 74 (153)
T cd02131 37 MNVTNQIALLKLGQ-APLLYKLSLLEEAGF-GGVLLYVDP 74 (153)
T ss_pred CCccceEEEEeccC-cchHHHHHHHHHCCC-eEEEEecCh
Confidence 67999999999999 889999999999999 999999884
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.91 Score=37.68 Aligned_cols=58 Identities=14% Similarity=0.243 Sum_probs=37.6
Q ss_pred CceEEEEEEEeecCCCc-eeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc
Q 047470 671 TTAKNFSRVVKNVGAED-SIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR 728 (757)
Q Consensus 671 ~~~~~~~rtvtnv~~~~-~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (757)
+...+++.+|+|-|... ...++++..|+|-.+...|..+.--++|++++++++|++..
T Consensus 4 G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~ 62 (78)
T PF10633_consen 4 GETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPA 62 (78)
T ss_dssp TEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-T
T ss_pred CCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCC
Confidence 44789999999999764 56888999999998888887765445899999999999864
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.51 Score=50.37 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=62.0
Q ss_pred cccccCCCC---CCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC--------CCCCCccccEEEechhh
Q 047470 391 KSICHLGSL---NPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--------IDSDEYYIPSLILPTSA 459 (757)
Q Consensus 391 ~~~c~~~~~---~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--------~~~~~~~~p~~~i~~~~ 459 (757)
.++|++... ........++++.||. |+|.+|+.+|+.+|. .++|++|+.. ...+...+++++++...
T Consensus 62 ~~aC~~i~~~p~~~~~~~~~laLI~Rg~-CsFe~Kv~~AQ~aGf-kaaIVynn~~~~~lv~~~~~~~~v~i~~~~vs~~~ 139 (348)
T KOG4628|consen 62 LNACNPITNFPEHSTRSTSFLALIRRGG-CSFEDKVLNAQRAGF-KAAIVYNNVGSEDLVAMASNPSKVDIHIVFVSVFS 139 (348)
T ss_pred ccccCccccCccCCCCCcceEEEEEccC-CchHHHHhhcccccC-ceEEEecCCCCchheeeccCCccceeEEEEEeeeh
Confidence 367875433 2445677899999999 999999999999999 9999999765 12345678999999999
Q ss_pred HHHHHHHHhcC
Q 047470 460 GTSIRQYVTGK 470 (757)
Q Consensus 460 g~~l~~~~~~~ 470 (757)
|+.|..|...+
T Consensus 140 ge~l~~~~~~~ 150 (348)
T KOG4628|consen 140 GELLSSYAGRT 150 (348)
T ss_pred HHHHHHhhccc
Confidence 99998875443
|
|
| >KOG3920 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.23 E-value=0.26 Score=45.56 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=69.2
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC----------CCCC-
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD----------IDSD- 446 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~----------~~~~- 446 (757)
+..++|... ...+|.... +.-...+.+++++||+ |+|..|..++..+|| ..+|+.++.. +..|
T Consensus 64 e~~~lV~ad---Pp~aC~elr-N~~f~~d~vaL~eRGe-CSFl~Ktl~~e~aGa-~aiiitd~~~~~~sf~~YveMI~D~ 137 (193)
T KOG3920|consen 64 ENLELVLAD---PPHACEELR-NEIFAPDSVALMERGE-CSFLVKTLNGEKAGA-TAIIITDSQNYEYSFHQYVEMIPDE 137 (193)
T ss_pred cCcceeecC---ChhHHHHHh-hcccCCCcEEEEecCC-ceeeehhhhhhhcCc-eEEEEecCCCCchhHHHHHHhcCcc
Confidence 345555543 366776322 3345778999999999 999999999999999 6666665543 2233
Q ss_pred ---CccccEEEechhhHHHHHHHHhcCCCCceEEEEeeee
Q 047470 447 ---EYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILT 483 (757)
Q Consensus 447 ---~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~ 483 (757)
...+|++++-..+|..++.-++.-. .+-+.|..+-.
T Consensus 138 sq~~AniPa~fllg~~Gy~ir~sL~r~~-r~ha~i~IPVn 176 (193)
T KOG3920|consen 138 SQDRANIPAVFLLGVTGYYIRVSLKRYF-RDHAKIDIPVN 176 (193)
T ss_pred cccccCCceEEEeccceEEEehhHHHhC-CccEEEecccc
Confidence 4579999999999887777776555 45555554443
|
|
| >cd04821 PA_M28_1_2 PA_M28_1_2: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 2 | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.3 Score=42.20 Aligned_cols=62 Identities=21% Similarity=0.227 Sum_probs=44.4
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCc-------------------hhHHHHHHHHcCCeEEEEec
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRID-------------------TYSQMEEVDRAGAYAAIFLT 438 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~-------------------~~~k~~~~~~~Ga~~g~i~~ 438 (757)
...|+||.+-......-...++...|++||||++..+. .. ...|...+...|| +|+|++
T Consensus 22 ~~~elVFvGyGi~ape~~~dDy~g~DVkGKiVvvl~~~-P~~~~~~~~~f~~~~~~~~~~~~~K~~~A~~~GA-~gvi~v 99 (157)
T cd04821 22 KDSPLVFVGYGIVAPEYGWDDYKGLDVKGKTVVILVND-PGFATPDSGLFNGKAMTYYGRWTYKYEEAARQGA-AGALIV 99 (157)
T ss_pred ccCCEEEeccCccCcccCcccccCCCcCCcEEEEEcCC-CCcccccccccCcccccccccHHHHHHHHHHCCC-eEEEEE
Confidence 56788887753222223334677889999999998664 21 2248999999999 999998
Q ss_pred cCC
Q 047470 439 DTP 441 (757)
Q Consensus 439 ~~~ 441 (757)
.+.
T Consensus 100 ~~~ 102 (157)
T cd04821 100 HET 102 (157)
T ss_pred eCC
Confidence 763
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=89.03 E-value=11 Score=33.88 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=39.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR 728 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~ 728 (757)
...++.+++|.+....+|++++..++|+++......+.+. +|++.++.|.+..+.
T Consensus 32 ~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v~-~g~~~~~~v~v~~p~ 86 (118)
T PF11614_consen 32 RNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITVP-PGETREVPVFVTAPP 86 (118)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-G
T ss_pred EEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEEC-CCCEEEEEEEEEECH
Confidence 5678899999999999999999998899996655778886 799999999998875
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.30 E-value=9.4 Score=42.18 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=58.7
Q ss_pred CceEEEEEEEeecCCCc-eeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc-CCCceEEEEEEEEEC
Q 047470 671 TTAKNFSRVVKNVGAED-SIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR-ESPRVSYGYLKWIDQ 743 (757)
Q Consensus 671 ~~~~~~~rtvtnv~~~~-~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~~~~~ 743 (757)
+...++...+.|.|+.+ ..-++++..|.|-.+.|+|.++-.-+++++.++++|++.+. ...+-|+=.|+-+++
T Consensus 396 Gee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~ksD 470 (513)
T COG1470 396 GEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAKSD 470 (513)
T ss_pred CccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEeec
Confidence 33778899999999875 45688999999999999998766667899999999999975 345667777777664
|
|
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=83.15 E-value=15 Score=33.43 Aligned_cols=79 Identities=8% Similarity=0.172 Sum_probs=54.4
Q ss_pred CeEEeeecCCCceEEEEEEEeecCCCceeEEEEEeC----CCC--------------------cEEEEecCeEEEeccce
Q 047470 661 PSFAAVFTNETTAKNFSRVVKNVGAEDSIYRAVLEF----PAG--------------------MNIRIEPSTLKFTQKYQ 716 (757)
Q Consensus 661 ps~~~~~~~~~~~~~~~rtvtnv~~~~~ty~~~v~~----p~g--------------------~~v~v~p~~~~~~~~~~ 716 (757)
..|-+.... +...++..+|+|.++.+.+|.+.+.. ..| --+++ |..++++ +++
T Consensus 17 ~YFdL~~~P-~q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl~-~~~ 93 (121)
T PF06030_consen 17 SYFDLKVKP-GQKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTLP-PNE 93 (121)
T ss_pred CeEEEEeCC-CCEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEEC-CCC
Confidence 345544443 33789999999999999999987542 111 01222 4447776 899
Q ss_pred eEEEEEEEEEccC-CCceEEEEEEEEE
Q 047470 717 LLDFALSVEIDRE-SPRVSYGYLKWID 742 (757)
Q Consensus 717 ~~~~~vt~~~~~~-~~~~~~G~~~~~~ 742 (757)
+++++++++.+.. -.+.+-|-|.++.
T Consensus 94 sk~V~~~i~~P~~~f~G~ilGGi~~~e 120 (121)
T PF06030_consen 94 SKTVTFTIKMPKKAFDGIILGGIYFSE 120 (121)
T ss_pred EEEEEEEEEcCCCCcCCEEEeeEEEEe
Confidence 9999999988753 4777888888764
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 757 | ||||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 1e-145 | ||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-101 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 7e-12 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 1e-10 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-07 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 2e-07 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 3e-07 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 3e-07 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 4e-07 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 5e-07 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 5e-07 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 6e-07 | ||
| 1xf1_A | 926 | Structure Of C5a Peptidase- A Key Virulence Factor | 6e-07 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 6e-07 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 6e-07 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 6e-07 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 6e-07 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 7e-07 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 7e-07 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 9e-07 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 9e-07 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 9e-07 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 9e-07 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 9e-07 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 1e-06 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 1e-06 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 1e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 2e-06 | ||
| 1dbi_A | 280 | Crystal Structure Of A Thermostable Serine Protease | 2e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 3e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 3e-06 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 3e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 4e-06 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 7e-06 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 7e-06 | ||
| 1wmf_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 7e-06 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 7e-06 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 8e-06 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 2e-05 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 2e-05 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 2e-05 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 2e-05 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 2e-05 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 3e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 4e-05 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 6e-05 | ||
| 1r6v_A | 671 | Crystal Structure Of Fervidolysin From Fervidobacte | 7e-05 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 7e-05 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 7e-05 | ||
| 1v6c_A | 441 | Crystal Structure Of Psychrophilic Subtilisin-like | 7e-05 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 7e-05 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 1e-04 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 9e-05 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 1e-04 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 2e-04 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 2e-04 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 2e-04 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 2e-04 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 3e-04 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 3e-04 | ||
| 2wv7_A | 329 | Intracellular Subtilisin Precursor From B. Clausii | 5e-04 | ||
| 2wv7_A | 329 | Intracellular Subtilisin Precursor From B. Clausii | 6e-04 | ||
| 2xrm_A | 311 | Processed Intracellular Subtilisin From B. Clausii | 6e-04 | ||
| 2xrm_A | 311 | Processed Intracellular Subtilisin From B. Clausii | 7e-04 | ||
| 2x8j_A | 327 | Intracellular Subtilisin Precursor From B. Clausii | 6e-04 | ||
| 1tec_E | 279 | Crystallographic Refinement By Incorporation Of Mol | 6e-04 | ||
| 1thm_A | 279 | Crystal Structure Of Thermitase At 1.4 Angstroms Re | 6e-04 | ||
| 2x8j_B | 327 | Intracellular Subtilisin Precursor From B. Clausii | 7e-04 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 8e-04 |
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From Streptococcus Length = 926 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease Length = 280 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom) Length = 434 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium Pennivorans, A Keratinolytic Enzyme Related To Subtilisin Length = 671 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Protease Apa1 From Antarctic Psychrotroph Pseudoalteromonas Sp. As-11 Length = 441 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 329 | Back alignment and structure |
|
| >pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 329 | Back alignment and structure |
|
| >pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii Length = 311 | Back alignment and structure |
|
| >pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii Length = 311 | Back alignment and structure |
|
| >pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii Length = 327 | Back alignment and structure |
|
| >pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular Dynamics. The Thermostable Serine Protease Thermitase Complexed With Eglin-C Length = 279 | Back alignment and structure |
|
| >pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms Resolution Length = 279 | Back alignment and structure |
|
| >pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii Length = 327 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 646 bits (1667), Expect = 0.0
Identities = 292/651 (44%), Positives = 398/651 (61%), Gaps = 23/651 (3%)
Query: 118 TTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCEN 177
TTH+ +FL L P+SGLWP++ GQ VI+ ++D+GIWPES SF D GMP +P+RW G C+
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 178 GTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEG 237
GT F+ +CNRKLIGA F+KG+ A V+ +SARD GHGTH +S AGN +G
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITM--NSARDTDGHGTHCASITAGNFAKG 118
Query: 238 VSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGF 297
VSHFGYA GTARG+APRA +A+YK + E + SD++A MDQA+ADGVD++S+S G+
Sbjct: 119 VSHFGYAPGTARGVAPRARLAVYKFSFN---EGTFTSDLIAAMDQAVADGVDMISISYGY 175
Query: 298 DQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHAT 356
P + D I+IAS A+ G++V +AGN G S++NG+PWI V +G DR+F T
Sbjct: 176 RFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235
Query: 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNR 416
+TL NGL +G S FP ++ D+P+ Y K ++ + +V CD++
Sbjct: 236 LTLGNGLKIRGWSLFPARAFVRDSPVIYNK-TLSDCSSEELLSQVENPENTIVICDDN-- 292
Query: 417 IDTYSQMEEVDRAGAYAAIFLTDTPDID-SDEYYIPSLILPTSAGTSIRQYVTGKNKSKV 475
D QM + RA AAIF+++ P + S + P +++ G + YV + +
Sbjct: 293 GDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVK-NSVTPT 351
Query: 476 KSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIG- 534
++ F T L TKPAP VA+ S+RGP GI KPDI+APGV +LAA PN+ IG
Sbjct: 352 ATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGT 411
Query: 535 NYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEI-- 592
N L TDY L SGTSMAAPH AG+AA+LKA H +WSP+AIRSA+MTTA P++ I
Sbjct: 412 NILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKD 471
Query: 593 --GVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQ-W 649
ATPLD GAGH+DPN+A+DPGL+YDA QDYV LC L + E+Q K + R +
Sbjct: 472 SDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASH 531
Query: 650 NCSQESTDLNYPSFAAVF----TNETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIE 705
NCS S DLNYPSF A++ + F R V NVG + Y+A L+ P I +
Sbjct: 532 NCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVS 591
Query: 706 PSTLKFTQKYQLLDFALSVEI-DRESPRVSYGYLKWIDQ-YNHTVSSPVVA 754
P L F K + + L++ E + G + W++Q NH+V SP+V
Sbjct: 592 PQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVT 642
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 610 bits (1574), Expect = 0.0
Identities = 235/648 (36%), Positives = 338/648 (52%), Gaps = 44/648 (6%)
Query: 118 TTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCEN 177
TT S +FLG + ++ +++G++DTGIWPES SF D+G P P +W G CE
Sbjct: 1 TTRSWDFLGF--PLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCET 58
Query: 178 GTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEG 237
F CNRK+IGARS+ G + D + RD GHGTHT+STAAG V
Sbjct: 59 SN---NFRCNRKIIGARSYHIGRPIS------PGDVNGPRDTNGHGTHTASTAAGGLVSQ 109
Query: 238 VSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGF 297
+ +G GTARG P A +A YKV W + + +D+LA D AIADGVDI+SLS+G
Sbjct: 110 ANLYGLGLGTARGGVPLARIAAYKVCWN---DGCSDTDILAAYDDAIADGVDIISLSVGG 166
Query: 298 DQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHA 355
YF D IAI S A+E GI+ +AGN G + + +PW+ +V A T+DR F
Sbjct: 167 ANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226
Query: 356 TVTLDNGLTFKGISYFPES------VYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVV 409
V + NG +F+G+S V D P G + C S+NP+ + GK+V
Sbjct: 227 QVQIGNGQSFQGVSINTFDNQYYPLVSGRDIP-NTGFDKSTSRFCTDKSVNPNLLKGKIV 285
Query: 410 FCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTG 469
C+ ++ E A + +T +D Y +PS +L + + +Y+
Sbjct: 286 VCE-----ASFGPHEFFKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYI-- 338
Query: 470 KNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIP 529
+ + F T + AP V SFSSRGP+ + ++KPDI PGV++LAA P
Sbjct: 339 YSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAP 398
Query: 530 FIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAE 589
I T + + SGTSM+ PH+ G+A +K + WSPAAI+SA+MTTA P+N
Sbjct: 399 VGGIRRN---TLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARF 455
Query: 590 NEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQW 649
N P +G+GH++P KA+ PGL+YDA+ DYV+FLCG GY+ + ++ +
Sbjct: 456 N-----PQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA 510
Query: 650 NCSQEST---DLNYPSFAAVFT-NETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIE 705
S + DLNYPSF + ++T + F+R + +V + S YRA++ P G+ I +
Sbjct: 511 CTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVN 570
Query: 706 PSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQYNHTVSSPVV 753
P+ L F F L+V V L W D H V SP+
Sbjct: 571 PNVLSFNGLGDRKSFTLTVRG-SIKGFVVSASLVWSDG-VHYVRSPIT 616
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 460 bits (1185), Expect = e-150
Identities = 109/613 (17%), Positives = 191/613 (31%), Gaps = 80/613 (13%)
Query: 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFV----CN 187
L A G G ++ +ID G E++ + E N
Sbjct: 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVN 67
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
K+ +S HGTH S +GN
Sbjct: 68 DKVAYYHDYS--------------KDGKTAVDQEHGTHVSGILSGN----APSETKEPYR 109
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPY--FND 305
G P A + + +V + A + + AI G ++++S G Y D
Sbjct: 110 LEGAMPEAQLLLMRVEIVNGLADY-ARNYAQAIRDAINLGAKVINMSFGNAALAYANLPD 168
Query: 306 VIAIASLSAIENGIVVVCAAGNDG----FPRSIHNGAPWITTVGAGTLDRSFHATVTLDN 361
A A G+ +V +AGND R P VG S +
Sbjct: 169 ETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSP 228
Query: 362 -GLTFKGISYFPESVYITDAPLYYGKN-------DVNKSICHLGSLNPDEVTGKVVFCDN 413
+ + + P+ D + + +V GK+ +
Sbjct: 229 DKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANRGTKEDDFKDVKGKIALIER 288
Query: 414 SNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS----DEYYIPSLILPTSAGTSIRQYVTG 469
+ ID ++ + +AGA + + + +P+ + G ++
Sbjct: 289 GD-IDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQK 347
Query: 470 KNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIP 529
+ L T ++ FSS G G +KPDI APG D+L++VA N
Sbjct: 348 T-----ITFNATPKVLPTASGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-- 398
Query: 530 FIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAA--------IRSAIMTT 581
YA SGTSM+AP VAG+ LL+ + P + +M++
Sbjct: 399 -----------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSS 447
Query: 582 AYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMK 641
A + + +P GAG +D KA + D L + +
Sbjct: 448 ATALYDED---EKAYFSPRQQGAGAVDAKKASAATMYVTDK--DNTSSKVHLNNVSDKFE 502
Query: 642 AVIRRNQWNCSQESTDLNYPSFAAVFTNETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMN 701
+ + N S + +L Y + + + V E S + + +
Sbjct: 503 VTVNVH--NKSDKPQELYYQA---TVQTDKVDGKHFALAPKVLYETSWQKITIPANSSKQ 557
Query: 702 IRIEPSTLKFTQK 714
+ + +F++
Sbjct: 558 VTVPIDASRFSKD 570
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-28
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 13/135 (9%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+ FSSRGP LKP++VAPG ++AA A + N Y GT+MA
Sbjct: 309 ITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSMGQPIN----DYYTAAPGTAMAT 362
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
PHVAG+AALL H W+P +++A++ TA + + +GAG ++ KA
Sbjct: 363 PHVAGIAALLLQAHPSWTPDKVKTALIETADI-------VKPDEIADIAYGAGRVNAYKA 415
Query: 613 MDPGLIYDADFQDYV 627
F YV
Sbjct: 416 AYYDNYAKLTFTGYV 430
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 65/291 (22%), Positives = 97/291 (33%), Gaps = 77/291 (26%)
Query: 82 HVIQGFSARLTPSQLSEIEKSPAHLATYPESF---------GKLFTTHSPNFL--GLKPN 130
H+I + ++ L I + L
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQV 126
Query: 131 S--GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNR 188
+W G G+ IGIIDTGI
Sbjct: 127 MATNMWNLGYDGSGITIGIIDTGIDASHPDLQG--------------------------- 159
Query: 189 KLIGARSFSKGLQAAGINVSKEYDF----DSARDFFGHGTHTSSTAAGNHVEGVSHFGYA 244
V DF + D GHGTH +S AAG
Sbjct: 160 -----------------KVIGWVDFVNGKTTPYDDNGHGTHVASIAAGTGAAS------- 195
Query: 245 KGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIAD----GVDIMSLSLGFDQT 300
G +G+AP A + KVL + SD++ G+D A+ + G+ +++LSLG Q+
Sbjct: 196 NGKYKGMAPGAKLVGIKVL--NGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQS 253
Query: 301 PYFNDVIAIASLSAIENGIVVVCAAGNDGF-PRSIHN--GAPWITTVGAGT 348
D ++ A +A + G+VVV AAGN G ++ + A + TVGA
Sbjct: 254 SDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVD 304
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 7e-27
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 32/122 (26%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
ASFSS GP + D++APGV + + + N Y ++GTSMA+
Sbjct: 186 RASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMAS 224
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
PHVAG AAL+ + H +W+ +RS++ T + +G G I+ A
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKL-----------GDSFYYGKGLINVQAA 273
Query: 613 MD 614
Sbjct: 274 AQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 94.2 bits (235), Expect = 2e-21
Identities = 54/221 (24%), Positives = 83/221 (37%), Gaps = 64/221 (28%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
L G V + +ID+GI K+ G
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHPDL-----------------------------KVAG 46
Query: 193 ARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAG-NHVEGVSHFGYAKGTARGI 251
S + + +D HGTH + T A N+ GV G+
Sbjct: 47 GASMVPS------------ETNPFQDNNSHGTHVAGTVAALNNSIGVL----------GV 84
Query: 252 APRAHVAMYKVLWATDTEESA-ASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIA 310
AP A + KVL + S S ++ G++ AIA+ +D++++SLG P + + A
Sbjct: 85 APSASLYAVKVL---GADGSGQYSWIINGIEWAIANNMDVINMSLG---GPSGSAALKAA 138
Query: 311 SLSAIENGIVVVCAAGNDGFPRSIHN-----GAPWITTVGA 346
A+ +G+VVV AAGN+G S P + VGA
Sbjct: 139 VDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGA 179
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 7e-27
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 32/242 (13%)
Query: 478 MRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYE 537
M + K +V +++SR P G + APG + + +
Sbjct: 404 MMEAEYAMREKLPGNVYTWTSRDPCID--GGQGVTVCAPGGAIASVPQFTM--------- 452
Query: 538 LVTDYALFSGTSMAAPHVAGVAAL----LKAIHRDWSPAAIRSAIMTTAYPVNFAENEIG 593
+ L +GTSMAAPHVAG AL LK + ++SP +I+ AI TA +
Sbjct: 453 --SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLG------- 503
Query: 594 VVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQ 653
P G G ++ KA + + + + F +G + +R+ S
Sbjct: 504 --YVDPFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNAD-KGIHLRQGVQRNSI 560
Query: 654 ESTDLNYPSFAAVFTNETTAK-NFSRVVKNVGAEDSI----YRAVLEFPAGMNIRIEPST 708
+ P F + K NF+ + + ++ + + + + +R++P+
Sbjct: 561 DYNVYIEPIFYNDKEADPKDKFNFNVRLNLIASQPWVQCGAFLDLSYGTRSIAVRVDPTG 620
Query: 709 LK 710
L+
Sbjct: 621 LQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 89.5 bits (221), Expect = 2e-18
Identities = 29/148 (19%), Positives = 54/148 (36%), Gaps = 20/148 (13%)
Query: 212 DFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEES 271
+ HGTH SS A+GNH + G+AP A + +
Sbjct: 262 VLEVVGMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAKIVSMTIGDGRLGSME 312
Query: 272 AASDVLAGMDQAI-----ADGVDIMSLSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAA 325
+ ++ M + + +D++++S G + + + + G+V V +A
Sbjct: 313 TGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASA 372
Query: 326 GNDG-FPRSIHNGA----PWITTVGAGT 348
GN G ++ P + VGA
Sbjct: 373 GNHGPALCTVGTPPDISQPSLIGVGAYV 400
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 32/120 (26%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
ASFSS G + +++APG V + N YA +GTSMA+
Sbjct: 185 RASFSSVGA--------ELEVMAPGAGVYSTYPTN-------------TYATLNGTSMAS 223
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
PHVAG AAL+ + H + S + +R+ + +TA + + +G G I+ A
Sbjct: 224 PHVAGAAALILSKHPNLSASQVRNRLSSTATYL-----------GSSFYYGKGLINVEAA 272
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 8e-21
Identities = 50/220 (22%), Positives = 80/220 (36%), Gaps = 65/220 (29%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
G V + ++DTGI ++G
Sbjct: 17 QAQGFKGANVKVAVLDTGIQASHPDL-----------------------------NVVGG 47
Query: 194 RSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAG-NHVEGVSHFGYAKGTARGIA 252
SF G D GHGTH + T A ++ GV G+A
Sbjct: 48 ASFVAGE-------------AYNTDGNGHGTHVAGTVAALDNTTGVL----------GVA 84
Query: 253 PRAHVAMYKVLWATDTEESAA-SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIAS 311
P + KVL ++ S + S +++G++ A +G+D++++SLG + + A
Sbjct: 85 PSVSLYAVKVL---NSSGSGSYSGIVSGIEWATTNGMDVINMSLG---GASGSTAMKQAV 138
Query: 312 LSAIENGIVVVCAAGNDGFPRSIHN-----GAPWITTVGA 346
+A G+VVV AAGN G S + + VGA
Sbjct: 139 DNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGA 178
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-26
Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 18/127 (14%)
Query: 486 GTKPAPHVASFSSRGP----DPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTD 541
VA +SSRG +I APG V +
Sbjct: 196 QQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNG-------------G 242
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLD 601
Y SGTSMA PHV+G+AA + A + S +RS + A V+ + G
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVD-IKGGYGAAIGDDYA 301
Query: 602 FGAGHID 608
G G
Sbjct: 302 SGFGFAR 308
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 90.8 bits (226), Expect = 4e-20
Identities = 49/246 (19%), Positives = 80/246 (32%), Gaps = 66/246 (26%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
S G G+ I ++DTG+ + +
Sbjct: 19 LTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQC 51
Query: 194 RSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAP 253
+ F+ +S D GHGTH + TA + G G+AP
Sbjct: 52 KDFTGATTPIN---------NSCTDRNGHGTHVAGTALADGGS--DQAGIY-----GVAP 95
Query: 254 RAHVAMYKVLWATDTEESAASDVLAGMDQAIADGV-----DIMSLSLGFDQTPYFNDVIA 308
A + YKVL D+ + D+ A + A I+S+SLG + N +I+
Sbjct: 96 DADLWAYKVL--LDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLG---SSANNSLIS 150
Query: 309 IASLSAIENGIVVVCAAGNDGFPRSIHN---GAPWITTVGAGTLDRSFHATVTLDNGLTF 365
A A G+++V AAGN G+ + P V A +
Sbjct: 151 SAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAA----------LENVQQNGT 200
Query: 366 KGISYF 371
++ +
Sbjct: 201 YRVADY 206
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 32/120 (26%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
ASFS G DIVAPGV+V + + YA +GTSMA
Sbjct: 180 RASFSQYGA--------GLDIVAPGVNVQSTYPGS-------------TYASLNGTSMAT 218
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
PHVAG AAL+K + WS IR+ + TA + + +G+G ++ A
Sbjct: 219 PHVAGAAALVKQKNPSWSNVQIRNHLKNTATSL-----------GSTNLYGSGLVNAEAA 267
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 31/152 (20%)
Query: 206 NVSKEYDF----DSARDFFGHGTHTSSTAAG-NHVEGVSHFGYAKGTARGIAPRAHVAMY 260
N+ F S +D GHGTH + T A N+ GV G+AP A +
Sbjct: 42 NIRGGASFVPGEPSTQDGNGHGTHVAGTIAALNNSIGVL----------GVAPSAELYAV 91
Query: 261 KVLWATDTEESAA-SDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGI 319
KVL S + S + G++ A +G+ + +LSLG +P + + A SA G+
Sbjct: 92 KVL---GASGSGSVSSIAQGLEWAGNNGMHVANLSLG---SPSPSATLEQAVNSATSRGV 145
Query: 320 VVVCAAGNDG-----FPRSIHNGAPWITTVGA 346
+VV A+GN G +P VGA
Sbjct: 146 LVVAASGNSGAGSISYPAR----YANAMAVGA 173
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 107 bits (267), Expect = 3e-24
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 21/127 (16%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTD-----YALFSG 547
VA FSSR + APGV +L+ V G+ E V Y + G
Sbjct: 328 VAGFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQG 379
Query: 548 TSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHI 607
TSMAAPHV GV A+L + P IR + TA+ N D G G +
Sbjct: 380 TSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFN--------GNGWDHDTGYGLV 431
Query: 608 DPNKAMD 614
+ A+
Sbjct: 432 KLDAALQ 438
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 82.4 bits (203), Expect = 2e-16
Identities = 38/214 (17%), Positives = 66/214 (30%), Gaps = 55/214 (25%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G +I+ ++DTG+ + +I
Sbjct: 153 GTNIIVAVVDTGVDGTHPDLEGQ---------------------------VIAGYRP--- 182
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVA 258
+ + GTH + T AA +G+ G+AP A +
Sbjct: 183 -----AFDEELPAGTDSSYGGSAGTHVAGTIAAKKDGKGIV----------GVAPGAKIM 227
Query: 259 MYKVLWATDTEES----AASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSA 314
+ V AG+ A G +M+ S G ++ + A A
Sbjct: 228 PIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWG---GWGYSYTMKEAFDYA 284
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA--PWITTVGA 346
+E+G+V+V +AGN+ A P + V A
Sbjct: 285 MEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAA 318
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-24
Identities = 53/329 (16%), Positives = 90/329 (27%), Gaps = 81/329 (24%)
Query: 39 YIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSE 98
Y++ + S + Y +L+ ++ ++ GF +++ L
Sbjct: 78 YVVVLKEETHLSQSERTARRLQAQAARRGYLTK----ILHVFHGLLPGFLVKMSGDLLEL 133
Query: 99 IEKSPAHLATYPESFGKLFTTHSPNFLG----LKPNSGLWPSARYGQGVIIGIIDTGIWP 154
K P Y E +F P L + + + G V + ++DT I
Sbjct: 134 ALKLPH--VDYIEEDSSVFAQSIPWNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQS 191
Query: 155 ESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFD 214
+ GR
Sbjct: 192 DHREI------------EGRVMVTDFE---------------------NVPEEDGTRFHR 218
Query: 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA- 273
A HGTH + +G G+A A + +VL + +
Sbjct: 219 QASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRSLRVL---NCQGKGTV 261
Query: 274 SDVLAGMDQAIADGVD------IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGN 327
S L G++ + ++ L L + N G+V+V AAGN
Sbjct: 262 SGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----RLARAGVVLVTAAGN 317
Query: 328 DGF------PRSIHNGAPWITTVGAGTLD 350
P S AP + TVGA
Sbjct: 318 FRDDACLYSPAS----APEVITVGATNAQ 342
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 8e-15
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
D+ APG D++ A T + SGTS AA HVAG+AA++ + + +
Sbjct: 360 DLFAPGEDIIGAS--------SDCS---TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 408
Query: 572 AAIRSAIMTTA 582
A +R ++ +
Sbjct: 409 AELRQRLIHFS 419
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 27/126 (21%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
FS+ G + K I+APG ++L A P +GTSMAA
Sbjct: 253 PCHFSNWGGNNT-----KEGILAPGEEILGAQ-PC------TEE-----PVRLTGTSMAA 295
Query: 553 PHVAGVAALLKAIH----RDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHID 608
P + G++ALL ++ + A+R+A++ TA P + V P G ++
Sbjct: 296 PVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCD------PEVVEEPERCLRGFVN 349
Query: 609 PNKAMD 614
AM
Sbjct: 350 IPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 91.8 bits (228), Expect = 4e-20
Identities = 39/223 (17%), Positives = 63/223 (28%), Gaps = 26/223 (11%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
L + I IID F + V W+ + + +
Sbjct: 41 LHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEP-AEPITPEDYAAFQSIRD 99
Query: 193 ARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIA 252
K + A V D H H +ST G V GIA
Sbjct: 100 QGLKGKEKEEALEAVI--PDTKDRIVLNDHACHVTSTIVGQEHSPVF----------GIA 147
Query: 253 PRAHVAMYKVLWATDTEES---AASDVLAGMDQAIADGVDIMSLSLGFD-QTPYFNDVIA 308
P V + ++ +D A+ G +I+ + QT +++
Sbjct: 148 PNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILV 207
Query: 309 IASLSAIENGIVVVCAAGNDG-----FPRSIHNGAPWITTVGA 346
A +N +++V GN+ P P VGA
Sbjct: 208 QAIKKCQDNNVLIVSPTGNNSNESWCLPAV----LPGTLAVGA 246
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 45/244 (18%), Positives = 78/244 (31%), Gaps = 50/244 (20%)
Query: 133 LWPSARY-GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLI 191
S GQG I+ + DTG+ + + + G+ A
Sbjct: 13 AQSSYGLYGQGQIVAVADTGLDT------GRNDSSMHEAFRGKITALYALG--------- 57
Query: 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGI 251
++A D GHGTH + + GN T +G+
Sbjct: 58 --------------------RTNNANDTNGHGTHVAGSVLGNG-----------STNKGM 86
Query: 252 APRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIAS 311
AP+A++ ++ + S++ QA + G I + S G +
Sbjct: 87 APQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVD 146
Query: 312 LSAIENGIVVVCAAGNDGFPRSIHNG---APWITTVGAGTLDRSFHATVTLDNGLTFKGI 368
+N + ++ AAGN+G + A TVGA R + + +
Sbjct: 147 DYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNINHVAQFS 206
Query: 369 SYFP 372
S P
Sbjct: 207 SRGP 210
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 95.4 bits (237), Expect = 6e-21
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
VA FSSRGP G +KPD++APG +L+A + P + YA GTSMA
Sbjct: 202 VAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDSSFW-ANHDSKYAYMGGTSMAT 258
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
P VAG A L+ + +++ A A + P + G G + +K+
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALI-AGAADIGLGYP--NGNQGWGRVTLDKS 315
Query: 613 MDPGLIYDAD 622
++ + ++
Sbjct: 316 LNVAYVNESS 325
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-22
Identities = 36/122 (29%), Positives = 51/122 (41%), Gaps = 33/122 (27%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+SFS+ G D+ APG + + + YA SGTSMA
Sbjct: 190 KSSFSTYGS--------WVDVAAPGSSIYSTYPTS-------------TYASLSGTSMAT 228
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
PHVAGVA LL + + S + IR+AI TA + T + G ++ KA
Sbjct: 229 PHVAGVAGLLAS--QGRSASNIRAAIENTADK----------ISGTGTYWAKGRVNAYKA 276
Query: 613 MD 614
+
Sbjct: 277 VQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 83.7 bits (208), Expect = 7e-18
Identities = 51/203 (25%), Positives = 70/203 (34%), Gaps = 68/203 (33%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
W A G G I I+DTG+ G+ G
Sbjct: 24 WDIAE-GSGAKIAIVDTGVQSNHPDL------------AGKVVGG--------------- 55
Query: 194 RSFSKGLQAAGINVSKEYDF----DSARDFFGHGTHTSSTAA--GNHVEGVSHFGYAKGT 247
+DF + ++ GHGTH + AA N+ G++
Sbjct: 56 -----------------WDFVDNDSTPQNGNGHGTHCAGIAAAVTNNSTGIA-------- 90
Query: 248 ARGIAPRAHVAMYKVLWATDTEESA-ASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDV 306
G AP+A + +VL D S + V G+ A G ++SLSLG N
Sbjct: 91 --GTAPKASILAVRVL---DNSGSGTWTAVANGITYAADQGAKVISLSLG---GTVGNSG 142
Query: 307 IAIASLSAIENGIVVVCAAGNDG 329
+ A A G VVV AAGN G
Sbjct: 143 LQQAVNYAWNKGSVVVAAAGNAG 165
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 33/122 (27%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+ASFS+ G D+VAPGVD+++ + N YA SGTSMA+
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIVSTITGN-------------RYAYMSGTSMAS 229
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
PHVAG+AALL + + + IR AI TA + T F G I+ A
Sbjct: 230 PHVAGLAALLAS--QGRNNIEIRQAIEQTADK----------ISGTGTYFKYGRINSYNA 277
Query: 613 MD 614
+
Sbjct: 278 VT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 83.4 bits (207), Expect = 8e-18
Identities = 49/221 (22%), Positives = 72/221 (32%), Gaps = 68/221 (30%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
W + G I +IDTG+ +G+ G
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDL------------DGKVIKG--------------- 56
Query: 194 RSFSKGLQAAGINVSKEYDF----DSARDFFGHGTHTSSTAA--GNHVEGVSHFGYAKGT 247
YDF D HGTH + AA N+ G++
Sbjct: 57 -----------------YDFVDNDYDPMDLNNHGTHVAGIAAAETNNATGIA-------- 91
Query: 248 ARGIAPRAHVAMYKVLWATDTEESA-ASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDV 306
G+AP + + L D S SD+ + A G ++++LSLG
Sbjct: 92 --GMAPNTRILAVRAL---DRNGSGTLSDIADAIIYAADSGAEVINLSLG---CDCHTTT 143
Query: 307 IAIASLSAIENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
+ A A G VVV AAGN+G + + + VGA
Sbjct: 144 LENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGA 184
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 97.0 bits (242), Expect = 5e-22
Identities = 32/127 (25%), Positives = 50/127 (39%), Gaps = 34/127 (26%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
++ F++ + DIVAPGV + + + YA SGT+MAA
Sbjct: 215 LSDFTNTNE--------EIDIVAPGVGIKSTYLDS-------------GYAELSGTAMAA 253
Query: 553 PHVAGVAALLKAIHRD-----WSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHI 607
PHVAG AL+ + D S I + ++ A P+ F G G +
Sbjct: 254 PHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGFTAQAEG--------NGFLTL 305
Query: 608 DPNKAMD 614
D + +
Sbjct: 306 DLVERIT 312
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 53/228 (23%), Positives = 85/228 (37%), Gaps = 66/228 (28%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
+W ++ G G IIG+IDTG + ++ +IG
Sbjct: 33 VWRASAKGAGQIIGVIDTGCQVDHPDLAER---------------------------IIG 65
Query: 193 ARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGI 251
+ + D + D GHGTH + T AA GV G+
Sbjct: 66 GVNLTTD---------YGGDETNFSDNNGHGTHVAGTVAAAETGSGVV----------GV 106
Query: 252 APRAHVAMYKVLWATDTEESAA-SDVLAGMDQAI------ADGVDIMSLSLGFDQTPYFN 304
AP+A + + K L + S + + A+ + + I+++SLG P +
Sbjct: 107 APKADLFIIKAL---SGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLG---GPTDS 160
Query: 305 DVIAIASLSAIENGIVVVCAAGNDGFPRSIHNG------APWITTVGA 346
+ + A A+ N + VVCAAGN+G R N + VGA
Sbjct: 161 EELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGA 208
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 98.8 bits (246), Expect = 6e-22
Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 26/132 (19%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTD---------YA 543
++ FS+ G + DI APG + Y + Y
Sbjct: 349 LSEFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYI 401
Query: 544 LFSGTSMAAPHVAGVAALLKA-IHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDF 602
+GT++A P V+G AL+ H + P + N +
Sbjct: 402 YQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKN---------NKPFSRY 452
Query: 603 GAGHIDPNKAMD 614
G G +D KA++
Sbjct: 453 GHGELDVYKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 9e-19
Identities = 41/209 (19%), Positives = 64/209 (30%), Gaps = 54/209 (25%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
+ I IIDTG+ H + N +
Sbjct: 139 YDDLPKHANTKIAIIDTGVMKN----H----------------------DDLKNNFSTDS 172
Query: 194 RSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAP 253
++ G + D D GHGT S + N + G+AP
Sbjct: 173 KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTSANG--KLI----------GVAP 220
Query: 254 RAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLS 313
MY+V ++++ V + QA DG ++++S+G ND
Sbjct: 221 NNKFTMYRVF---GSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDE 277
Query: 314 -------------AIENGIVVVCAAGNDG 329
A + +VV AAGNDG
Sbjct: 278 KVEYDALQKAINYAKKKKSIVVAAAGNDG 306
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 1e-21
Identities = 19/122 (15%), Positives = 37/122 (30%), Gaps = 29/122 (23%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+ S G + + DI APG ++ SGTS A
Sbjct: 236 GITGSRFGNNWV-------DIAAPGQNITFLRPDA-------------KTGTGSGTSEAT 275
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
V+GV A + + + + ++ ++ +A ++ KA
Sbjct: 276 AIVSGVLAAMTSCNPRATATELKRTLLESADKYP---------SLVDKVTEGRVLNAEKA 326
Query: 613 MD 614
+
Sbjct: 327 IS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 1e-18
Identities = 38/267 (14%), Positives = 75/267 (28%), Gaps = 70/267 (26%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
V++ ++D+G+ +F + + +F
Sbjct: 37 MSLTDKNTPVVVSVVDSGV-----AFI----GGL----SDSEFAKFSF------------ 71
Query: 194 RSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAP 253
+ + + HGT +S A G+ G+ P
Sbjct: 72 -----------TQDGSPFPVKKSEALYIHGTAMASLIASR--YGIY----------GVYP 108
Query: 254 RAHVAMYKVLWATDT-EESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASL 312
A ++ +V+ A + + I+++S G + + S
Sbjct: 109 HALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR 168
Query: 313 SAIENGIVVVCAAGNDG------------FP------RSIHNGAPWITTVGAGTLDRSFH 354
N ++V A GNDG +P S++ + V A L +
Sbjct: 169 MGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAA--LAQYRK 226
Query: 355 ATVTLDNGLTFKGISYFPESVYITDAP 381
+ +G G + V I AP
Sbjct: 227 GETPVLHGGGITGSRFGNNWVDIA-AP 252
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 93.2 bits (232), Expect = 9e-21
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 44/135 (32%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+ASFS+R P+ + APGVD+L+ + Y GT+MA
Sbjct: 213 IASFSNRQPE----------VSAPGVDILSTYPDD-------------SYETLMGTAMAT 249
Query: 553 PHVAGVAALLKAIHR-------------DWSPAAIRSAIMTTAYPVNFAENEIGVVPATP 599
PHV+GV AL++A + D S +R + TA +
Sbjct: 250 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLG--------PTGWD 301
Query: 600 LDFGAGHIDPNKAMD 614
D+G G + A+
Sbjct: 302 ADYGYGVVRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 5e-14
Identities = 47/229 (20%), Positives = 75/229 (32%), Gaps = 72/229 (31%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
+ + ++DTG+ + + S
Sbjct: 28 VSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVST--- 57
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVA 258
+ D GHGTH T AA N+ GV G+AP +
Sbjct: 58 -----LRGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGVV----------GVAPGVQIY 102
Query: 259 MYKVLWATDTEESAASDVLAGMDQAIAD--------------------GVDIMSLSLGFD 298
+VL + SD+ G++QAI +++S+SLG
Sbjct: 103 SVRVL--DARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-- 158
Query: 299 QTPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
P + + + A GIV+V A+GN+G P + A P + VGA
Sbjct: 159 -GPADDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 90.6 bits (225), Expect = 2e-19
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 44/135 (32%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+ASFS+R P+ + APGVD+L+ + Y GT+MA
Sbjct: 288 IASFSNRQPE----------VSAPGVDILSTYPDD-------------SYETLMGTAMAT 324
Query: 553 PHVAGVAALLKAIHR-------------DWSPAAIRSAIMTTAYPVNFAENEIGVVPATP 599
PHV+GV AL++A + D S +R + TA +
Sbjct: 325 PHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGP--------TGWD 376
Query: 600 LDFGAGHIDPNKAMD 614
D+G G + A+
Sbjct: 377 ADYGYGVVRAALAVQ 391
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 59/311 (18%), Positives = 98/311 (31%), Gaps = 95/311 (30%)
Query: 76 LLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGKLFTTHSPNFLGLKPNS---- 131
++Y + I + + + +++K P E + P++LG
Sbjct: 26 IVYQFKL-IPAVVVDVPANAVGKLKKMPG--VEKVEFDHQAVLLGKPSWLGGGSTQPAQT 82
Query: 132 ---GL--------WPSARY-GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGT 179
G+ W + + ++DTG+ +
Sbjct: 83 IPWGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDL------------AANIAWCV 130
Query: 180 AFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAG-NHVEGV 238
+ + D GHGTH T A N+ GV
Sbjct: 131 ST-----------------------LRGKVSTKLRDCADQNGHGTHVIGTIAALNNDIGV 167
Query: 239 SHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAA-SDVLAGMDQAIAD----------- 286
G+AP + +VL D S + SD+ G++QAI
Sbjct: 168 V----------GVAPGVQIYSVRVL---DARGSGSYSDIAIGIEQAILGPDGVADKDGDG 214
Query: 287 ---------GVDIMSLSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN 336
+++S+SLG Y D+I A GIV+V A+GN+G P +
Sbjct: 215 IIAGDPDDDAAEVISMSLGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYP 270
Query: 337 GA-PWITTVGA 346
A P + VGA
Sbjct: 271 AAYPEVIAVGA 281
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 27/125 (21%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFS+ G D+ APG D+L+ V + Y+ +GTSMA P
Sbjct: 235 ASFSNYGV--------DVDLAAPGQDILSTVDSG------TRRPVSDAYSFMAGTSMATP 280
Query: 554 HVAGVAALLKA----IHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDP 609
HV+GVAAL+ + ++++ +PA ++ +++T P N G+G +D
Sbjct: 281 HVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFN---------GRLDRALGSGIVDA 331
Query: 610 NKAMD 614
A++
Sbjct: 332 EAAVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 44/229 (19%), Positives = 71/229 (31%), Gaps = 42/229 (18%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPP--VPRRWNGRCENGTAFSPFVCNRKLI 191
W GQ V++ ++DTGI H G + + +
Sbjct: 25 WDMGFTGQNVVVAVVDTGILH-----H-----RDLNANVLPGYDFISNSQISLDGDGRDA 74
Query: 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSST--AAGNHVEGVSHFGYAKGTAR 249
+ + D HG+H + T A N+ GV+
Sbjct: 75 DPFDEGDWFDNWACGGRPDPRKE-RSDSSWHGSHVAGTIAAVTNNRIGVA---------- 123
Query: 250 GIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAI----------ADGVDIMSLSLGFDQ 299
G+A A V + L SD+ G+ A + ++++SLG D
Sbjct: 124 GVAYGAKVVPVRAL---GRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDG 180
Query: 300 TPYFNDVIAIASLSAIENGIVVVCAAGNDGFPRSIHN--GAPWITTVGA 346
+ A G +VV AAGN+ S + +VGA
Sbjct: 181 --QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGA 227
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 47/231 (20%), Positives = 77/231 (33%), Gaps = 72/231 (31%)
Query: 128 KPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCN 187
P + + G GV +IDTG+ E F GR +G F
Sbjct: 16 LPLDRNYNANFDGFGVTAYVIDTGVNNNHEEF------------GGRSVSGYDFVD---- 59
Query: 188 RKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGT 247
+ + D GHGTH + T G+
Sbjct: 60 ------------------------NDADSSDCNGHGTHVAGTIGGSQY------------ 83
Query: 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGV--DIMSLSLGFDQTPYFND 305
G+A ++ +VL + + S V++G+D + + ++SLG Q+ +
Sbjct: 84 --GVAKNVNIVGVRVL--SCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQSTALDS 139
Query: 306 VIAIASLSAIENGIVVVCAAGNDGF------PRSIHNGAPWITTVGAGTLD 350
+ AI++G+ + AAGN P P TVG+ T
Sbjct: 140 AVQ----GAIQSGVSFMLAAGNSNADACNTSPAR----VPSGVTVGSTTSS 182
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 7e-17
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 26/106 (24%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
+SFS+ G D+ APG + +A Y SGTSMA P
Sbjct: 186 SSFSNWGSCV--------DLFAPGSQIKSAW--------YDG-----GYKTISGTSMATP 224
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATP 599
HVAGVAAL + +P + + + A N++ T
Sbjct: 225 HVAGVAALYLQENNGLTPLQLTGLLNSRASE-----NKVSDTRGTT 265
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 50/230 (21%), Positives = 77/230 (33%), Gaps = 72/230 (31%)
Query: 129 PNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNR 188
P + + G GV +IDTG+ F GR +G F
Sbjct: 19 PLDNNYHTDYDGSGVTAFVIDTGVLNTHNEF------------GGRASSGYDFID----- 61
Query: 189 KLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTA 248
+ A D GHGTH + T G+
Sbjct: 62 -----------------------NDYDATDCNGHGTHVAGTIGGSTY------------- 85
Query: 249 RGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGV--DIMSLSLGFDQTPYFNDV 306
G+A +V +VL + + S V+AG++ + + ++SLG + +D
Sbjct: 86 -GVAKNVNVVGVRVL--NCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGASQATDDA 142
Query: 307 IAIASLSAIENGIVVVCAAGNDGF------PRSIHNGAPWITTVGAGTLD 350
+ +A+ GI V AAGND P A TVG+ T +
Sbjct: 143 VN----AAVAAGITFVVAAGNDNSNACNYSPAR----AADAITVGSTTSN 184
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
+SFS+ G DI APG + ++ + + SGTSMA+P
Sbjct: 188 SSFSNYGTCL--------DIYAPGSSITSSWYTSN-----------SATNTISGTSMASP 228
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAGVAAL + + SPA + + + T A
Sbjct: 229 HVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 5e-17
Identities = 46/219 (21%), Positives = 70/219 (31%), Gaps = 74/219 (33%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G+GV + +IDTGI F GR G
Sbjct: 30 GRGVNVYVIDTGIRTTHREF------------GGRARVGYDALG---------------- 61
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
+ +D GHGTH + T G G+A ++
Sbjct: 62 --------------GNGQDCNGHGTHVAGTIGGVTY--------------GVAKAVNLYA 93
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADGVD--IMSLSLGFDQTPYFNDVIAIASLSAIEN 317
+VL + S V+AG+D + + ++SLG + ++ + ++I
Sbjct: 94 VRVL--DCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGVSTALDNAVK----NSIAA 147
Query: 318 GIVVVCAAGNDGF------PRSIHNGAPWITTVGAGTLD 350
G+V AAGND P TVGA T
Sbjct: 148 GVVYAVAAGNDNANACNYSPAR----VAEALTVGATTSS 182
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 5e-16
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
ASFS+ G D+ APG + +A + T +GTSMA P
Sbjct: 186 ASFSNYGSCV--------DLFAPGASIPSAW--------YTSD---TATQTLNGTSMATP 226
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAGVAAL + +PA++ SAI+ A
Sbjct: 227 HVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 6e-17
Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 37/122 (30%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
+A + G + G DY ++GTSMA
Sbjct: 342 LALKAKLGQST--------TVSNQGNQ---------------------DYEYYNGTSMAT 372
Query: 553 PHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
PHV+GVA L+ + H + S + +R+A+ TA ++ V G G I+ A
Sbjct: 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLS--------VAGRDNQTGYGMINAVAA 424
Query: 613 MD 614
Sbjct: 425 KA 426
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 9e-15
Identities = 39/213 (18%), Positives = 72/213 (33%), Gaps = 60/213 (28%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
I IID+G + +
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNANNVT---------------------------------- 46
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSST-AAGNHVEGVSHFGYAKGTARGIAPRAHVA 258
G N S ++ + HGTH + T AA + EGV G+ P +
Sbjct: 47 ----GTNNSGTGNWYQPGNNNAHGTHVAGTIAAIANNEGVV----------GVMPNQNAN 92
Query: 259 MY--KVLWATDTEESA-ASDVLAGMDQAI-ADGVDIMSLSLGFDQTPYFNDVIAIASLSA 314
++ KV + +S ++A +D + + G +++++SLG A +
Sbjct: 93 IHIVKVF---NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG---GSGSTTTERNALNTH 146
Query: 315 IENGIVVVCAAGNDGFPRSIHNGA-PWITTVGA 346
NG++++ AAGN G + + + +V A
Sbjct: 147 YNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAA 179
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 14/80 (17%), Positives = 20/80 (25%), Gaps = 17/80 (21%)
Query: 493 VASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAA 552
A+FS +I PG +L+ V G L G S +
Sbjct: 186 HAAFSQYTDQV--------EISGPGEAILSTVTV-------GEGRLA--DITIGGQSYFS 228
Query: 553 PHVAGVAALLKAIHRDWSPA 572
V L +
Sbjct: 229 NGVVPHNRLTPSGTSYAPAP 248
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-16
Identities = 50/224 (22%), Positives = 75/224 (33%), Gaps = 80/224 (35%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G G + +IDTG+ F GR + +++
Sbjct: 31 GAGACVYVIDTGVEDTHPDF------------EGRAKQIKSYA----------------- 61
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
+ARD GHGTH + T G+A + +
Sbjct: 62 --------------STARDGHGHGTHCAGTIGSKTW--------------GVAKKVSIFG 93
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADGVD-------IMSLSLGFDQTPYFNDVIAIASL 312
KVL D+ + S+++AGMD +D + S+SLG + N A
Sbjct: 94 VKVL--DDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGGYSAALNQAAA---- 147
Query: 313 SAIENGIVVVCAAGNDGF------PRSIHNGAPWITTVGAGTLD 350
+G+ V AAGND P S P + TVGA +
Sbjct: 148 RLQSSGVFVAVAAGNDNRDAANTSPAS----EPTVCTVGATDSN 187
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 22/89 (24%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
++FS+ G DI APG + + IG SGTSMA P
Sbjct: 191 STFSNYGRVV--------DIFAPGTSITSTW--------IGG-----RTNTISGTSMATP 229
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
H+AG+AA L + S A+ I T +
Sbjct: 230 HIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 3e-16
Identities = 40/223 (17%), Positives = 58/223 (26%), Gaps = 69/223 (30%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
G V + ++DT I + GR
Sbjct: 25 GSLVEVYLLDTSIQSDHREI------------EGRV---------------------MVT 51
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
A HGTH + +G G+A A +
Sbjct: 52 DFENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRDA--------------GVAKGASMRS 97
Query: 260 YKVLWATDTEESAASDVLAGMDQAIAD------GVDIMSLSLGFDQTPYFNDVIAIASLS 313
+VL + S L G++ G ++ L L + N
Sbjct: 98 LRVL--NCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYSRVLNAACQ----R 151
Query: 314 AIENGIVVVCAAGNDGF------PRSIHNGAPWITTVGAGTLD 350
G+V+V AAGN P S AP + TVGA
Sbjct: 152 LARAGVVLVTAAGNFRDDACLYSPAS----APEVITVGATNAQ 190
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 3e-15
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 512 DIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSP 571
D+ APG D++ A T + SGTS AA HVAG+AA++ + + +
Sbjct: 208 DLFAPGEDIIGAS--------SDCS---TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTL 256
Query: 572 AAIRSAIMTTA 582
A +R ++ +
Sbjct: 257 AELRQRLIHFS 267
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 3e-16
Identities = 53/225 (23%), Positives = 74/225 (32%), Gaps = 82/225 (36%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
GQG + +IDTGI F GR + +
Sbjct: 30 GQGSCVYVIDTGIEASHPEF------------EGRAQMVKTY------------------ 59
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
+ S+RD GHGTH + T G+A + +
Sbjct: 60 -------------YYSSRDGNGHGTHCAGTVGSRTY--------------GVAKKTQLFG 92
Query: 260 YKVLWATDTEESAA-SDVLAGMDQAIADGVD-------IMSLSLGFDQTPYFNDVIAIAS 311
KVL D S S ++AGMD +D + + SLSLG + N A
Sbjct: 93 VKVL---DDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGYSSSVNSAAA--- 146
Query: 312 LSAIENGIVVVCAAGNDGF------PRSIHNGAPWITTVGAGTLD 350
+G++V AAGN+ P S P + TVGA
Sbjct: 147 -RLQSSGVMVAVAAGNNNADARNYSPAS----EPSVCTVGASDRY 186
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 7e-14
Identities = 30/89 (33%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAP 553
+SFS+ G DI PG D+L+ IG SGTSMA P
Sbjct: 190 SSFSNYGSVL--------DIFGPGTDILSTW--------IGG-----STRSISGTSMATP 228
Query: 554 HVAGVAALLKAIHRDWSPAAIRSAIMTTA 582
HVAG+AA L + + A+ I TA
Sbjct: 229 HVAGLAAYLMTLG-KTTAASACRYIADTA 256
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 1e-09
Identities = 19/101 (18%), Positives = 40/101 (39%), Gaps = 4/101 (3%)
Query: 518 VDVLAAVAPNIPFIEIGNYELVTD-YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRS 576
+ N +I +L +GTS +AP AG+ AL +++ + ++
Sbjct: 229 TLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQH 288
Query: 577 AIMTTAYPVNFAENE---IGVVPATPLDFGAGHIDPNKAMD 614
++ T+ P + ++ GV +G G +D +
Sbjct: 289 LVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVA 329
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 4e-07
Identities = 34/234 (14%), Positives = 60/234 (25%), Gaps = 65/234 (27%)
Query: 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLI 191
W G G+++ I+D GI P N
Sbjct: 29 EAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYDPGASFDVND------------------ 70
Query: 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSST--AAGNHVEGVSHFGYAKGTAR 249
+ + HGT + A N+
Sbjct: 71 --------------QDPDPQPRYTQMNDNRHGTRCAGEVAAVANNGVCGV---------- 106
Query: 250 GIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-DGVDIMSLSLGFDQTPYFNDVIA 308
G+A A + ++L + +D + + + + I S S G + D A
Sbjct: 107 GVAYNARIGGVRML------DGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPA 160
Query: 309 IASLSAIEN---------GIVVVCAAGNDGFPRSIHNGA-----PWITTVGAGT 348
+ A G + V A+GN G N + ++ + T
Sbjct: 161 RLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT 214
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 3e-08
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPL- 600
GTS AAP AGV LL + + + ++ + +A + + A
Sbjct: 265 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 324
Query: 601 ---DFGAGHIDPNKAMDP 615
+G G ID +K ++
Sbjct: 325 YSHRYGFGKIDAHKLIEM 342
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 4e-06
Identities = 38/237 (16%), Positives = 61/237 (25%), Gaps = 66/237 (27%)
Query: 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLI 191
LW + G GV+ I+D G+ E+E D +N
Sbjct: 45 DLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCAEGSWDFNDNTNLPKPRL--------- 95
Query: 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSST--AAGNHVEGVSHFGYAKGTAR 249
HGT + A +
Sbjct: 96 --------------------------SDDYHGTRCAGEIAAKKGNNFCGV---------- 119
Query: 250 GIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAI 309
G+ A ++ ++L + + D A + D DI S S G +
Sbjct: 120 GVGYNAKISGIRIL----SGDITTEDEAASLIYG-LDVNDIYSCSWGPADDGRHLQGPSD 174
Query: 310 ASLSAIEN---------GIVVVCAAGNDGFPRSIHN-----GAPWITTVGAGTLDRS 352
A+ G + V A+GN G N + + T+GA
Sbjct: 175 LVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDL 231
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.91 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.85 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 99.03 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 99.02 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.97 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 98.82 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 98.68 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 98.41 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 97.61 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 96.2 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 94.82 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 94.39 | |
| 3fed_A | 707 | Glutamate carboxypeptidase III; metallopeptidase, | 93.61 | |
| 3kas_A | 640 | Transferrin receptor protein 1; transferrin recept | 92.9 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 90.16 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 86.4 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 85.44 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 80.77 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-121 Score=1057.59 Aligned_cols=626 Identities=46% Similarity=0.787 Sum_probs=568.9
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeecc
Q 047470 118 TTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFS 197 (757)
Q Consensus 118 ~~~s~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~ 197 (757)
++++|+|+|++....+|..+.+|+||+|||||||||++||+|.+.+++++|.+|+|.|+.|.+|....||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 47899999998767899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHH
Q 047470 198 KGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVL 277 (757)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~ 277 (757)
++++... ++...+..+++|.+||||||||||||+.+++.+.+|++.+.+.||||+|+|+++|+++ ..|+..++++
T Consensus 81 ~~~~~~~--~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~---~~g~~~~~i~ 155 (649)
T 3i6s_A 81 KGILAND--PTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSF---NEGTFTSDLI 155 (649)
T ss_dssp HHHHHHC--TTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEE---TTEECHHHHH
T ss_pred Ccccccc--cccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccC---CCCCCHHHHH
Confidence 8776443 2334555678999999999999999999888888898889999999999999999999 7779999999
Q ss_pred HHHHHHHhCCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceee
Q 047470 278 AGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHAT 356 (757)
Q Consensus 278 ~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~ 356 (757)
+||+||+++|+||||||||....++..+.+..++++|.++|++||+||||+| ...++.+.+||+|+|||++.||.|+.+
T Consensus 156 ~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~ 235 (649)
T 3i6s_A 156 AAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGT 235 (649)
T ss_dssp HHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEE
T ss_pred HHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeE
Confidence 9999999999999999999877778889999999999999999999999999 888899999999999999999999999
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCc--cceEEEEeCCCCCchhHHHHHHHHcCCeEE
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEV--TGKVVFCDNSNRIDTYSQMEEVDRAGAYAA 434 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~--~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g 434 (757)
+.++|++++.|.+++........+|++|.. ....|.+..+++.++ +|||++|+|+. |.+.+|..++..+|+ +|
T Consensus 236 ~~lgng~~~~g~sl~~~~~~~~~~plv~~~---~~~~C~~~~l~~~~vdl~GkIvlc~~g~-~~~~~k~~~~~~~Ga-~g 310 (649)
T 3i6s_A 236 LTLGNGLKIRGWSLFPARAFVRDSPVIYNK---TLSDCSSEELLSQVENPENTIVICDDNG-DFSDQMRIITRARLK-AA 310 (649)
T ss_dssp EEETTSCEEEEECCCSSCBCEEEEEEECCT---TTTTCCCHHHHTTSSSGGGCEEEECCCS-CHHHHHHHHHHHTCS-EE
T ss_pred EEeCCCcEEeeeecccCcccCcceeeEecc---cccccccccccccccccCCcEEEEeCCC-ccHHHHHHHHHhcCc-eE
Confidence 999999999999999877656889999976 467899988888877 99999999999 999999999999999 99
Q ss_pred EEeccCCC-CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceE
Q 047470 435 IFLTDTPD-IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDI 513 (757)
Q Consensus 435 ~i~~~~~~-~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI 513 (757)
+|++|+.. ...+.+.+|.++|+..+|+.|++|+++++ +++++|.+..+..+..+.+.+++||||||+...+++|||||
T Consensus 311 ~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~-~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKPDI 389 (649)
T 3i6s_A 311 IFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSV-TPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDI 389 (649)
T ss_dssp EEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCS-SCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSCCE
T ss_pred EEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCC-CceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCCeE
Confidence 99999876 55677899999999999999999999999 99999999999998889999999999999998789999999
Q ss_pred EeCCCCeEecccCCCCccccCCCc-cccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCcc
Q 047470 514 VAPGVDVLAAVAPNIPFIEIGNYE-LVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEI 592 (757)
Q Consensus 514 ~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~ 592 (757)
+|||++|+++++..........+. +...|..+||||||||||||+||||||+||+|+|++||++||+||++++..+.++
T Consensus 390 ~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~~i 469 (649)
T 3i6s_A 390 LAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469 (649)
T ss_dssp EEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSSBC
T ss_pred EeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCCcc
Confidence 999999999999875544443333 4468999999999999999999999999999999999999999999998877665
Q ss_pred c----cCCCCCCCCCCCccCccccCCCCceecCCchhhHHhhhcCCCCccceeeeeeccccC--CCCCCCCCCCCeEEee
Q 047470 593 G----VVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWN--CSQESTDLNYPSFAAV 666 (757)
Q Consensus 593 ~----~~~~~~~~~G~G~vd~~~Al~~~lv~d~~~~dy~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~ln~ps~~~~ 666 (757)
. ..++.++.||+|+||+.+|++||||||++++||+.|||++||+.++|+.|++ ...+ |+..+.+||||||++.
T Consensus 470 ~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~-~~~~~~C~~~~~~lNyPs~~~~ 548 (649)
T 3i6s_A 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIAR-SSASHNCSNPSADLNYPSFIAL 548 (649)
T ss_dssp EETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHT-TTSCC-CCCCCCCCCCSSEEEE
T ss_pred cccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeec-CCCcCCCCCchhhcCCCcEEee
Confidence 4 4467889999999999999999999999999999999999999999999998 5556 9766789999999998
Q ss_pred e-cCCCce-----EEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc-CCCceEEEEEE
Q 047470 667 F-TNETTA-----KNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR-ESPRVSYGYLK 739 (757)
Q Consensus 667 ~-~~~~~~-----~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~G~~~ 739 (757)
+ .. + . ++|+|||||||+..++|+++|+.|.|++|+|+|++|+|.+.+|+++|+|||+... ..+.|.||+|+
T Consensus 549 ~~~~-~-~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~fg~l~ 626 (649)
T 3i6s_A 549 YSIE-G-NFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSIT 626 (649)
T ss_dssp ECCS-S-CCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCEEEEE
T ss_pred cccC-C-CCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEEEEEE
Confidence 7 32 2 3 8999999999999999999999999999999999999998999999999999874 35678999999
Q ss_pred EEEC-CccEEEEEEEEEeC
Q 047470 740 WIDQ-YNHTVSSPVVAIKT 757 (757)
Q Consensus 740 ~~~~-~~~~v~~P~~v~~~ 757 (757)
|+++ +.|.||+||+|++.
T Consensus 627 w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 627 WVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEETTSCCEEEEEEEEEEC
T ss_pred EEcCCCCeEEEEeEEEEEc
Confidence 9997 88999999999874
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-110 Score=966.53 Aligned_cols=605 Identities=39% Similarity=0.642 Sum_probs=511.2
Q ss_pred ccCCCCccCCCCCCCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeecc
Q 047470 118 TTHSPNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFS 197 (757)
Q Consensus 118 ~~~s~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~ 197 (757)
++++|+|+|++. .+|.+..+|+||+|||||||||++||+|.|+++++++.+|+|.|+.+.+|. ||+|++|+++|.
T Consensus 1 tt~s~~flGl~~--~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~---~n~k~ig~~~~~ 75 (621)
T 3vta_A 1 TTRSWDFLGFPL--TVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFR---CNRKIIGARSYH 75 (621)
T ss_dssp CCSHHHHTTCCT--TCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCC---CCSSEEEEEECC
T ss_pred CCCChhHcCCCc--cccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcc---cCcceeeeeecc
Confidence 578999999975 689999999999999999999999999999999999999999999998885 999999999998
Q ss_pred chhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHH
Q 047470 198 KGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVL 277 (757)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~ 277 (757)
.+.... ..+..+++|.+||||||||||||+..++.+..|.+.+.++||||+|+|++||+|+ +.|+..++++
T Consensus 76 ~~~~~~------~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~---~~g~~~~di~ 146 (621)
T 3vta_A 76 IGRPIS------PGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCW---NDGCSDTDIL 146 (621)
T ss_dssp CSSSCC------TTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEE---TTEECHHHHH
T ss_pred cCCccC------CCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeec---CCCCCHHHHH
Confidence 764332 2344568899999999999999998888888888888899999999999999999 8889999999
Q ss_pred HHHHHHHhCCCcEEEeCCCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEecccccccccee
Q 047470 278 AGMDQAIADGVDIMSLSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHA 355 (757)
Q Consensus 278 ~ai~~a~~~g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~ 355 (757)
+||++|+++|+||||||||+.. ..+..+++++++++|.++||+||+||||+| ...++.+.+||+++|++++.++.|..
T Consensus 147 ~a~~~a~~~g~dVin~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~ 226 (621)
T 3vta_A 147 AAYDDAIADGVDIISLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVT 226 (621)
T ss_dssp HHHHHHHHHTCSEEEECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEE
T ss_pred HHHHHHHHhCCCEEEecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeecccccee
Confidence 9999999999999999999876 556778999999999999999999999999 88999999999999999999999999
Q ss_pred eEEeCCCcEEEEEeecCCCCCCceeeeEEccC-------CCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHH
Q 047470 356 TVTLDNGLTFKGISYFPESVYITDAPLYYGKN-------DVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDR 428 (757)
Q Consensus 356 ~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~-------~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~ 428 (757)
.+.++++..+.+.++..... ..+++++..+ ......|.+..+++.+++|||++|+++. ..+..+...
T Consensus 227 ~~~~~~~~~~~~~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~----~~~~~~~~~ 300 (621)
T 3vta_A 227 QVQIGNGQSFQGVSINTFDN--QYYPLVSGRDIPNTGFDKSTSRFCTDKSVNPNLLKGKIVVCEASF----GPHEFFKSL 300 (621)
T ss_dssp EEEETTSCEEEEBCCCCSCC--EEECEEETTTSCCTTCCHHHHTTTCTTCSCGGGTTTSEEECSSCC----CHHHHHHHH
T ss_pred eEEeccCceeeeeecccCCC--cccccccccccccccccccccccccccccccccccceEEEEecCC----ChhHHhhhh
Confidence 99999999999988765433 5677776654 1235678899999999999999998654 456667778
Q ss_pred cCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCC
Q 047470 429 AGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGI 508 (757)
Q Consensus 429 ~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~ 508 (757)
.|+ .+++++++.....+.+.+|...++..++..++.|+.... .+...+...... .....+.++.||||||+...+++
T Consensus 301 ~Ga-~gvi~~~~~~~~~~~~~lP~~~v~~~~g~~i~~~~~~~~-~~~a~~~~~~~~-~~~~~~~va~FSSrGP~~~~~~i 377 (621)
T 3vta_A 301 DGA-AGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIR-SPGATIFKSTTI-LNASAPVVVSFSSRGPNRATKDV 377 (621)
T ss_dssp TTC-SEEEEECSCCSSCCCCSSSEEEECHHHHHHHHHHHHHHS-SCCEEECCCEEE-ECTTCCCBCTTSCCCSCTTCTTS
T ss_pred cce-eEEEEEecCCCcccccccceEEECHHHHHHHHHHHhccC-CcceEEecceEe-ccCCCCceeeecCCCCCCCCCCe
Confidence 899 999999887766677889999999999999999999887 777766444433 34567899999999999888899
Q ss_pred CCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCC
Q 047470 509 LKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFA 588 (757)
Q Consensus 509 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~ 588 (757)
+||||+|||++|+++++...... .+.....|..+||||||||||||+||||||+||+|+|++||++||+||++++..
T Consensus 378 lKPDI~APG~~Ilsa~~~~~~~~---~~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~ 454 (621)
T 3vta_A 378 IKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNAR 454 (621)
T ss_dssp CSCCEEEECSSEEEECCSSSCBT---TBCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTT
T ss_pred eccccccCCcceEeecCcccccc---CcCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCccccc
Confidence 99999999999999998654322 223345899999999999999999999999999999999999999999998765
Q ss_pred CCccccCCCCCCCCCCCccCccccCCCCceecCCchhhHHhhhcCCCCccceeeeeeccccCCCCC----CCCCCCCeEE
Q 047470 589 ENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAVIRRNQWNCSQE----STDLNYPSFA 664 (757)
Q Consensus 589 ~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~d~~~~dy~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~ln~ps~~ 664 (757)
+ .+..+++||+|+||+.+|++||||||+..+||+.|||+++|+.++++.+++ +...|+.. ..+||||||+
T Consensus 455 ~-----~~~~~~~~GaG~v~~~~A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lN~pS~~ 528 (621)
T 3vta_A 455 F-----NPQAEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITG-DYSACTSGNTGRVWDLNYPSFG 528 (621)
T ss_dssp T-----CTTTHHHHTTCBCCHHHHSCCSEECCCCGGGCC------------------------------CGGGSCCSSEE
T ss_pred C-----CCCCchhcCCCccCHHHhcCCCeEeecccchhhhhhcccCCCchhheeeec-cccccCCCCcCcccccccccEE
Confidence 3 356789999999999999999999999999999999999999999999998 56677543 5799999999
Q ss_pred eeecC-CCceEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEEC
Q 047470 665 AVFTN-ETTAKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQ 743 (757)
Q Consensus 665 ~~~~~-~~~~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~ 743 (757)
+.... ...+++|+|||||||+...||+++++.|+|++|+|+|++|+|.+.+|+++|+|||+.. .++.|+||+|+|++
T Consensus 529 v~~~~~~~~~~t~~rtvtnvg~~~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~-~~~~~~~g~l~w~d- 606 (621)
T 3vta_A 529 LSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS-IKGFVVSASLVWSD- 606 (621)
T ss_dssp EECCSSCCEEEEEEEEEEECSSSCEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC-CCSSEEEEEEEEEC-
T ss_pred EEccCCCceEEEEEEEEEccCCCCeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec-CCCceEEEEEEEEc-
Confidence 97632 1337899999999999999999999999999999999999999899999999999875 57889999999999
Q ss_pred CccEEEEEEEEEe
Q 047470 744 YNHTVSSPVVAIK 756 (757)
Q Consensus 744 ~~~~v~~P~~v~~ 756 (757)
+.|.||+||+|+.
T Consensus 607 ~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 607 GVHYVRSPITITS 619 (621)
T ss_dssp SSCCCEEEEEEEC
T ss_pred CCEEEEeCEEEEE
Confidence 9999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-80 Score=750.68 Aligned_cols=528 Identities=23% Similarity=0.323 Sum_probs=421.8
Q ss_pred CCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCC----------CCcccCceeeeeeeccchhh
Q 047470 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAF----------SPFVCNRKLIGARSFSKGLQ 201 (757)
Q Consensus 132 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f----------~~~~~~~kv~g~~~~~~~~~ 201 (757)
.+|.++.+|+||+|||||||||++||+|.+. ..|++.|..+..| ...+||+|++++++|.++.
T Consensus 8 ~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~~------~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~~~~~~- 80 (926)
T 1xf1_A 8 TLQEKAGKGAGTVVAVIDAGFDKNHEAWRLT------DKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSKDG- 80 (926)
T ss_dssp HHHHHHCSCTTCEEEEEESCCTTCCCCCSCC------SCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEESCCCS-
T ss_pred HHHhccCCCCCcEEEEEecCCCCCCHhHcCC------CCCcccccchhhhcccccccCcccccccCcccceeeccccCC-
Confidence 3899999999999999999999999999843 4576666543222 1237999999999986531
Q ss_pred hccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC--CCHHHHHHH
Q 047470 202 AAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE--SAASDVLAG 279 (757)
Q Consensus 202 ~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g--~~~~~i~~a 279 (757)
...|..||||||||||||+...+.+. .+.+.||||+|+|+++|+|+ ..+ +..+++++|
T Consensus 81 -------------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~---~~g~~~~~~~i~~A 140 (926)
T 1xf1_A 81 -------------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEI---VNGLADYARNYAQA 140 (926)
T ss_dssp -------------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCC---CSCHHHHHHHHHHH
T ss_pred -------------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeec---CCCCCCcHHHHHHH
Confidence 12288999999999999987544321 24468999999999999998 555 456789999
Q ss_pred HHHHHhCCCcEEEeCCCCCC--CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCC-------------Cccc--CCCce
Q 047470 280 MDQAIADGVDIMSLSLGFDQ--TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPR-------------SIHN--GAPWI 341 (757)
Q Consensus 280 i~~a~~~g~dVIn~SlG~~~--~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~-------------~~~~--~ap~~ 341 (757)
|++|+++|+||||||||... .....+.+..++++|.++|++||+||||+| ... ++.+ .+||+
T Consensus 141 i~~Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~v 220 (926)
T 1xf1_A 141 IRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADST 220 (926)
T ss_dssp HHHHHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCS
T ss_pred HHHHHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCce
Confidence 99999999999999999864 234567788888999999999999999999 321 2233 37899
Q ss_pred EEeccccccccceeeEEe-CCCcEEEEEeecCCCCC--CceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCc
Q 047470 342 TTVGAGTLDRSFHATVTL-DNGLTFKGISYFPESVY--ITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRID 418 (757)
Q Consensus 342 itVgas~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~--~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~ 418 (757)
|+|||++.++.+...+.+ +++....+.+++...++ ...+|+++.+. .|.+..+ .+++|||++|+|+. |.
T Consensus 221 itVgA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~-----g~~~~~~--~~v~Gkivl~~rg~-~~ 292 (926)
T 1xf1_A 221 LTVASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR-----GTKEDDF--KDVKGKIALIERGD-ID 292 (926)
T ss_dssp EEEEEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT-----SCSTTTT--TTCTTSEEEEECCS-SC
T ss_pred EEEeccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC-----CCCccch--hhcCCeEEEEECCC-CC
Confidence 999999999999988887 66655555555443333 27899999764 4776666 68999999999999 99
Q ss_pred hhHHHHHHHHcCCeEEEEeccCCC-----CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeee--ccCcCCC
Q 047470 419 TYSQMEEVDRAGAYAAIFLTDTPD-----IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTE--LGTKPAP 491 (757)
Q Consensus 419 ~~~k~~~~~~~Ga~~g~i~~~~~~-----~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~~~ 491 (757)
+.+|..++..+|| .|+|++|+.. .......+|+.+++..++..|++ ++..++.+..+. ......+
T Consensus 293 ~~~k~~~~~~~Ga-~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~-------~~~~ti~~~~~~~~~~~~~~~ 364 (926)
T 1xf1_A 293 FKDKIAKAKKAGA-VGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD-------NPQKTITFNATPKVLPTASGT 364 (926)
T ss_dssp HHHHHHHHHHTTC-SEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH-------CSSCEEEECSSCEEEECSSCS
T ss_pred HHHHHHHHHhCCC-cEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh-------CCceEEEecccceecccCCcc
Confidence 9999999999999 9999999865 12345689999999999998875 345566666554 4445677
Q ss_pred ccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHH----hCC
Q 047470 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKA----IHR 567 (757)
Q Consensus 492 ~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p 567 (757)
.++.||||||+. ++++||||+|||++|+++++++ .|..+||||||||||||+||||+| .||
T Consensus 365 ~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~~-------------~y~~~SGTSMAaPhVAG~aALl~q~~k~~~P 429 (926)
T 1xf1_A 365 KLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVANN-------------KYAKLSGTSMSAPLVAGIMGLLQKQYETQYP 429 (926)
T ss_dssp BCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSCS-------------SSCEEESCTTHHHHHHHHHHHHHHHHHHSSS
T ss_pred eeccccCCCCCC--CCccCceEECCCCCEEeeccCC-------------cceecCccchhHHHHHHHHHHHHHHHhccCC
Confidence 999999999996 7999999999999999999875 899999999999999999999964 599
Q ss_pred CCCHHH----HHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCCCCceecCCchhhHHhhhcCCCCccceeee
Q 047470 568 DWSPAA----IRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEKQMKAV 643 (757)
Q Consensus 568 ~~s~~~----ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~d~~~~dy~~~l~~~~~~~~~~~~~ 643 (757)
+|+|+| ||++||+||+++...+. ...+++++||+|+||+.+|+++.+ |||..+++..
T Consensus 430 ~~sp~~~~~~Iks~L~~TA~~~~~~~~---~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~----- 490 (926)
T 1xf1_A 430 DMTPSERLDLAKKVLMSSATALYDEDE---KAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSS----- 490 (926)
T ss_dssp SSHHHHHHHHHHHHHHHHSBCCEEGGG---TEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCS-----
T ss_pred CCCHHHHHHHHHHHHHhcCCCcccCCC---CccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcc-----
Confidence 999997 99999999998864321 234577899999999999999844 6787665332
Q ss_pred eeccccCCCCCCCCCCCCeEEeeecCCCceEEEEEEEeecCCC--ceeEEEEEeC--CCCcEEEEecCeEEEecc-----
Q 047470 644 IRRNQWNCSQESTDLNYPSFAAVFTNETTAKNFSRVVKNVGAE--DSIYRAVLEF--PAGMNIRIEPSTLKFTQK----- 714 (757)
Q Consensus 644 ~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~rtvtnv~~~--~~ty~~~v~~--p~g~~v~v~p~~~~~~~~----- 714 (757)
+|.+.... . ..+++|||||+|+. ..+|++++.. |.+..++|+|..|.|...
T Consensus 491 ------------------~i~l~~~~-~-~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~~~vtv 550 (926)
T 1xf1_A 491 ------------------KVHLNNVS-D-KFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSWQKITI 550 (926)
T ss_dssp ------------------CEEEEEEC-S-EEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCCEEEEE
T ss_pred ------------------eeeccccC-c-cEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccCCeEEE
Confidence 23333221 2 67899999999985 4678888775 778999998887766544
Q ss_pred --ceeEEEEEEEEEcc---------CCCceEEEEEEEEEC-Ccc-EEEEEEEEEe
Q 047470 715 --YQLLDFALSVEIDR---------ESPRVSYGYLKWIDQ-YNH-TVSSPVVAIK 756 (757)
Q Consensus 715 --~~~~~~~vt~~~~~---------~~~~~~~G~~~~~~~-~~~-~v~~P~~v~~ 756 (757)
||+++|+|||++.. +++.++||+|+|+++ +.| .||+||++..
T Consensus 551 ~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~ 605 (926)
T 1xf1_A 551 PANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFR 605 (926)
T ss_dssp CTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEE
T ss_pred CCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEe
Confidence 99999999999852 245689999999953 555 5999999875
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-59 Score=533.55 Aligned_cols=364 Identities=32% Similarity=0.467 Sum_probs=286.7
Q ss_pred CCceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHH-----------HcCC
Q 047470 35 DHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEI-----------EKSP 103 (757)
Q Consensus 35 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L-----------~~~p 103 (757)
...+|||+|++... .+.+.+.+++. +.+++++|+ .|+||+++++++++++| +++|
T Consensus 34 ~~~~~iV~~~~~~~-------~~~~~~~~~~~------g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~ 99 (539)
T 3afg_A 34 QEVSTIIMFDNQAD-------KEKAVEILDFL------GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLS 99 (539)
T ss_dssp CEEEEEEEESSHHH-------HHHHHHHHHHH------TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCT
T ss_pred CceEEEEEECCCCC-------HHHHHHHHHhc------CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCC
Confidence 45579999998641 11222333333 578999997 79999999999999999 8899
Q ss_pred CeEEEEecccccccccCC--CCccCCCCCCCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCC
Q 047470 104 AHLATYPESFGKLFTTHS--PNFLGLKPNSGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAF 181 (757)
Q Consensus 104 ~V~~V~~~~~~~~~~~~s--~~~~g~~~~~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f 181 (757)
+|++|++++.+++..... ...+.......+|..+++|+||+|||||||||++||+|.+
T Consensus 100 ~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~gv~VaViDtGid~~Hpdl~~-------------------- 159 (539)
T 3afg_A 100 GVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYDGSGITIGIIDTGIDASHPDLQG-------------------- 159 (539)
T ss_dssp TEEEEEECCEEECC-----------CCBCSCCBCCSCCCTTCEEEEEESBCCTTSGGGTT--------------------
T ss_pred CeeEEEecccccccCccccCCccccccCcHhHHhcCCCCCCcEEEEEecCCCCCChHHhC--------------------
Confidence 999999999988743221 0111111224689999999999999999999999999974
Q ss_pred CCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeee
Q 047470 182 SPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYK 261 (757)
Q Consensus 182 ~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~k 261 (757)
++++.++|.++. ..+.|++||||||||||+|+..+. .+.+.||||+|+|+++|
T Consensus 160 -------~i~~~~d~~~~~-------------~~~~D~~gHGThVAgiiag~~~~~-------~g~~~GvAp~A~l~~~k 212 (539)
T 3afg_A 160 -------KVIGWVDFVNGK-------------TTPYDDNGHGTHVASIAAGTGAAS-------NGKYKGMAPGAKLVGIK 212 (539)
T ss_dssp -------TEEEEEETTTCC-------------SSCCBSSSHHHHHHHHHHCCCGGG-------TTTTCCSCTTCEEEEEE
T ss_pred -------CEeeeEECCCCC-------------CCCCCCCCCHHHHHHHHhCcCccC-------CCCEEEECCCCEEEEEE
Confidence 355666664321 236788999999999999874321 23357999999999999
Q ss_pred ccccCCCCC-CCHHHHHHHHHHHHhC----CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC--
Q 047470 262 VLWATDTEE-SAASDVLAGMDQAIAD----GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS-- 333 (757)
Q Consensus 262 v~~~~~~~g-~~~~~i~~ai~~a~~~----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~-- 333 (757)
+++ +.| +..+++++||+||+++ |++|||||||........+.+..++.++.++|++||+||||+| ...+
T Consensus 213 v~~---~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~~~~~~~~l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~ 289 (539)
T 3afg_A 213 VLN---GQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDGTDSLSQAVNNAWDAGLVVVVAAGNSGPNKYTVG 289 (539)
T ss_dssp CSC---TTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCSCCCSCSHHHHHHHHHHHTTCEEEEECCSCCSSSSCCC
T ss_pred eec---CCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCCCCccchHHHHHHHHHHhcCCEEEEECCCCCCCCCccc
Confidence 998 666 7889999999999975 9999999999876444567888899999999999999999999 5443
Q ss_pred cccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeC
Q 047470 334 IHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDN 413 (757)
Q Consensus 334 ~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~ 413 (757)
.++.++++|+|||+..
T Consensus 290 ~Pa~~~~vitVgA~~~---------------------------------------------------------------- 305 (539)
T 3afg_A 290 SPAAASKVITVGAVDK---------------------------------------------------------------- 305 (539)
T ss_dssp TTTTCSSSEEEEEECT----------------------------------------------------------------
T ss_pred CCccCCceEEEeeecC----------------------------------------------------------------
Confidence 4566789999987421
Q ss_pred CCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCcc
Q 047470 414 SNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHV 493 (757)
Q Consensus 414 g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 493 (757)
.+.+
T Consensus 306 ----------------------------------------------------------------------------~~~~ 309 (539)
T 3afg_A 306 ----------------------------------------------------------------------------YDVI 309 (539)
T ss_dssp ----------------------------------------------------------------------------TSCB
T ss_pred ----------------------------------------------------------------------------Cccc
Confidence 1257
Q ss_pred ccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHH
Q 047470 494 ASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAA 573 (757)
Q Consensus 494 a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ 573 (757)
++||||||+. ++++||||+|||++|+++++..... .+.....|..++|||||||||||++|||+|++|+|++++
T Consensus 310 a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ 383 (539)
T 3afg_A 310 TDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDK 383 (539)
T ss_dssp CSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC----SEECSSSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHH
T ss_pred ccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC----CCCCcccccccCchHHHHHHHHHHHHHHHHHCCCCCHHH
Confidence 8999999998 6899999999999999998754211 111123699999999999999999999999999999999
Q ss_pred HHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCCC
Q 047470 574 IRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDP 615 (757)
Q Consensus 574 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 615 (757)
||++|++||+++...+ .++..||||+||+.+|++.
T Consensus 384 vk~~L~~tA~~~~~~~-------~~~~~~G~G~vn~~~Al~~ 418 (539)
T 3afg_A 384 VKTALIETADIVKPDE-------IADIAYGAGRVNAYKAAYY 418 (539)
T ss_dssp HHHHHHHHSBCSSGGG-------CSBTTTBTCBCCHHHHHTG
T ss_pred HHHHHHhhCccCCCCC-------CCccCccCCccCHHHHhhh
Confidence 9999999999875322 2567899999999999984
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-57 Score=503.51 Aligned_cols=341 Identities=26% Similarity=0.380 Sum_probs=273.6
Q ss_pred CceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEeccccc
Q 047470 36 HQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGK 115 (757)
Q Consensus 36 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 115 (757)
+.+|||+||++.. .++ ++++. +.++.++|. .+++|+++++++++++|+++|+|++|++++.++
T Consensus 2 ~~~~iV~~~~~~~------~~~----~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~ 64 (395)
T 2z2z_A 2 TIRVIVSVDKAKF------NPH----EVLGI------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 64 (395)
T ss_dssp EEEEEEEECTTTC------CHH----HHHHT------TCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEE
T ss_pred cEEEEEEECCCcc------HHH----HHHHc------CCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeec
Confidence 4689999999842 122 23333 678999998 599999999999999999999999999999887
Q ss_pred ccccCC-----------CCccCCCCC--CCCCCCCCCCCc--cEEEEEecCCccCCccccCCCCCCCCccccccccCCCC
Q 047470 116 LFTTHS-----------PNFLGLKPN--SGLWPSARYGQG--VIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTA 180 (757)
Q Consensus 116 ~~~~~s-----------~~~~g~~~~--~~~~~~~~~G~G--v~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~ 180 (757)
+..... ...|+++.. +.+|..+ +|+| |+|||||||||++||+|.++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~-~G~g~~v~VaViDtGid~~Hp~l~~~------------------ 125 (395)
T 2z2z_A 65 LLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN------------------ 125 (395)
T ss_dssp ECCEECC------CCSCCCCHHHHHTTCGGGGGTC-SSCCTTCEEEEEESCBCTTCTTTGGG------------------
T ss_pred ccCCCCcccccccCccccCCcchhhcCHHHHHhhc-CCCCCcEEEEEEcCCCCCCChhHhhc------------------
Confidence 643221 122333222 4689988 9999 99999999999999999742
Q ss_pred CCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEee
Q 047470 181 FSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMY 260 (757)
Q Consensus 181 f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~ 260 (757)
+...++|..+... ....+..|..||||||||||+|.. ++ ..+.||||+|+|+.+
T Consensus 126 ---------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~vAgiia~~~-n~--------~g~~GvAp~a~l~~~ 179 (395)
T 2z2z_A 126 ---------IAWCVSTLRGKVS--------TKLRDCADQNGHGTHVIGTIAALN-ND--------IGVVGVAPGVQIYSV 179 (395)
T ss_dssp ---------EEEEEECGGGCCB--------CCHHHHBCSSSHHHHHHHHHHCCC-SS--------SSCCCSSTTCEEEEE
T ss_pred ---------cccCccccCCccc--------CCCCCCCCCCCCHHHHHHHHHeec-CC--------CceEEECCCCEEEEE
Confidence 3344444332100 000124678999999999999873 11 124799999999999
Q ss_pred eccccCCCCC-CCHHHHHHHHHHHHhC--------------------CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCc
Q 047470 261 KVLWATDTEE-SAASDVLAGMDQAIAD--------------------GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGI 319 (757)
Q Consensus 261 kv~~~~~~~g-~~~~~i~~ai~~a~~~--------------------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi 319 (757)
|+++ +.| ++.+++++||+||+++ +++|||||||... ....+..++.++.++|+
T Consensus 180 kv~~---~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv 253 (395)
T 2z2z_A 180 RVLD---ARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGI 253 (395)
T ss_dssp ECSC---TTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTC
T ss_pred EEec---CCCCccHHHHHHHHHHHHhCccccccccccccccccccCCCCeEEEecCCCCC---CCHHHHHHHHHHHHCCC
Confidence 9998 666 7889999999999988 9999999999864 23456667778899999
Q ss_pred EEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCC
Q 047470 320 VVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGS 398 (757)
Q Consensus 320 ~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~ 398 (757)
+||+||||+| ....+++..|++|+|||++.
T Consensus 254 ~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------------------------------- 284 (395)
T 2z2z_A 254 VIVAASGNEGAPSPSYPAAYPEVIAVGAIDS------------------------------------------------- 284 (395)
T ss_dssp EEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------------------------------------------
T ss_pred EEEEECCCCCCCCCCCccCCCCEEEEEEecC-------------------------------------------------
Confidence 9999999999 66677888899999998421
Q ss_pred CCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEE
Q 047470 399 LNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSM 478 (757)
Q Consensus 399 ~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i 478 (757)
T Consensus 285 -------------------------------------------------------------------------------- 284 (395)
T 2z2z_A 285 -------------------------------------------------------------------------------- 284 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHH
Q 047470 479 RFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGV 558 (757)
Q Consensus 479 ~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 558 (757)
.+.+++||++|| +|+|||++|+++++.+ .|..++|||||||||||+
T Consensus 285 -----------~~~~a~fS~~G~----------~v~APG~~i~s~~~~~-------------~y~~~sGTS~AaP~VaG~ 330 (395)
T 2z2z_A 285 -----------NDNIASFSNRQP----------EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGV 330 (395)
T ss_dssp -----------TSCBCTTSCSSC----------SEEEECSSEEEEETTT-------------EEEEEESHHHHHHHHHHH
T ss_pred -----------CCCCCcccCCCC----------CEEeCCCCeeeecCCC-------------ceEecCCHHHHHHHHHHH
Confidence 236789999997 6799999999999875 899999999999999999
Q ss_pred HHHHHHhCC-------------CCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCCC
Q 047470 559 AALLKAIHR-------------DWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDP 615 (757)
Q Consensus 559 aALl~~~~p-------------~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 615 (757)
+|||+|++| .|++.+||++|++||+++... ..+..||||+||+.+|++.
T Consensus 331 aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~--------g~~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 331 VALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPT--------GWDADYGYGVVRAALAVQA 392 (395)
T ss_dssp HHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSS--------SSBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCC--------CCCCCccCceeCHHHHHHH
Confidence 999999999 999999999999999988432 3567999999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-55 Score=499.42 Aligned_cols=355 Identities=20% Similarity=0.265 Sum_probs=274.1
Q ss_pred CCceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHHHc-CCCeEEEEeccc
Q 047470 35 DHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEK-SPAHLATYPESF 113 (757)
Q Consensus 35 ~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~-~p~V~~V~~~~~ 113 (757)
..+.|||++++.. .+.+++++. +.++.+.|. .|++|+++++++++++|++ +|.|++|++++.
T Consensus 43 ~~~~yiv~~~~~~----------~~~~~~~~~------g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~ 105 (471)
T 3t41_A 43 EELYYSVEYKNTA----------TFNKLVKKK------SLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCS 105 (471)
T ss_dssp CCEEEEEEESCHH----------HHHHHHHHH------TCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCS
T ss_pred CceEEEEEcCCHH----------HHHHHHHhC------CCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecce
Confidence 4568999887652 233344443 678899996 5999999999999999999 999999999998
Q ss_pred ccccccCCC----------CccCCCCC---CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCC
Q 047470 114 GKLFTTHSP----------NFLGLKPN---SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTA 180 (757)
Q Consensus 114 ~~~~~~~s~----------~~~g~~~~---~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~ 180 (757)
+++...... ..|++... ..+|..+.+|+||+|||||||||++||+|.++.. .+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~~~~G~gv~VaViDtGid~~Hp~~~~~~~-------~~~------ 172 (471)
T 3t41_A 106 TCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDDLPKHANTKIAIIDTGVMKNHDDLKNNFS-------TDS------ 172 (471)
T ss_dssp SCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGGCCSSCCCCEEEEESCCCTTCTTTTTTBC-------TTC------
T ss_pred eccccccccccCCCCccccccccHhhccCcHHHHhccCCCCCcEEEEEeCCCCCCChhHhcCcc-------cCC------
Confidence 877543221 12333222 3689999999999999999999999999986311 100
Q ss_pred CCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEee
Q 047470 181 FSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMY 260 (757)
Q Consensus 181 f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~ 260 (757)
..++....|... ......+...+.|..||||||||||+|+.. +.||||+|+|+++
T Consensus 173 -------~~~~~~~~~~~~------~~~~~~~~~~~~d~~gHGT~vAgiiaa~g~------------~~GvAp~a~l~~~ 227 (471)
T 3t41_A 173 -------KNLVPLNGFRGT------EPEETGDVHDVNDRKGHGTMVSGQTSANGK------------LIGVAPNNKFTMY 227 (471)
T ss_dssp -------EECCCTTCGGGC------CTTCCCCTTCCCCSSSHHHHHHHHHHCBSS------------SBCSSTTSCEEEE
T ss_pred -------cccccCCCccCC------CcccCCCCCCCcCCCCccchhhheeecCCc------------eeEECCCCeEEEE
Confidence 001111111110 001112223567899999999999998631 4799999999999
Q ss_pred eccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCCCCCC-CC------------CccCHHHHHHHHHHhCCcEEEEecCC
Q 047470 261 KVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQ-TP------------YFNDVIAIASLSAIENGIVVVCAAGN 327 (757)
Q Consensus 261 kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~SlG~~~-~~------------~~~~~~~~a~~~a~~~Gi~vV~AAGN 327 (757)
|+++ ...+..+++++||+||++++++|||||||... .. ...+.+..++..+.++|++||+||||
T Consensus 228 kv~~---~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN 304 (471)
T 3t41_A 228 RVFG---SKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKKKSIVVAAAGN 304 (471)
T ss_dssp ECCS---SSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHTTCEEEEECCS
T ss_pred Eecc---CCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 9998 66688999999999999999999999999742 10 22356777888899999999999999
Q ss_pred CC-CCC------------------CcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCC
Q 047470 328 DG-FPR------------------SIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKND 388 (757)
Q Consensus 328 ~g-~~~------------------~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~ 388 (757)
+| ... ..++.+|++|+|||++.
T Consensus 305 ~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~--------------------------------------- 345 (471)
T 3t41_A 305 DGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQ--------------------------------------- 345 (471)
T ss_dssp SCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECT---------------------------------------
T ss_pred CCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCC---------------------------------------
Confidence 99 433 24566778888887421
Q ss_pred CCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHh
Q 047470 389 VNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVT 468 (757)
Q Consensus 389 ~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~ 468 (757)
T Consensus 346 -------------------------------------------------------------------------------- 345 (471)
T 3t41_A 346 -------------------------------------------------------------------------------- 345 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCC----------------------eEecccC
Q 047470 469 GKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVD----------------------VLAAVAP 526 (757)
Q Consensus 469 ~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~----------------------I~sa~~~ 526 (757)
.+.+++|||+||+. |||+|||++ |+++++.
T Consensus 346 ---------------------~~~~a~fS~~G~~~-------~di~APG~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~ 397 (471)
T 3t41_A 346 ---------------------KSNLSEFSNFGMNY-------TDIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANN 397 (471)
T ss_dssp ---------------------TSSBCTTCCBCTTT-------CCEEEECCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT
T ss_pred ---------------------CCCCCCccCCCCCC-------CeEEecCCCcccccccccccccccccccCceeEecCCC
Confidence 23679999999974 499999987 8888876
Q ss_pred CCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC-CCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 047470 527 NIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR-DWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAG 605 (757)
Q Consensus 527 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G 605 (757)
+ .|..++|||||||||||++|||+|++| .++|++||++|++||++... .++..||||
T Consensus 398 ~-------------~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~v~~~L~~tA~~~~~---------~~~~~~G~G 455 (471)
T 3t41_A 398 G-------------RYIYQAGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNN---------KPFSRYGHG 455 (471)
T ss_dssp S-------------SEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHSBCCSC---------CCHHHHTTC
T ss_pred C-------------CEEeecchHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCCCC---------CCcCccccC
Confidence 5 899999999999999999999999999 89999999999999997743 366799999
Q ss_pred ccCccccCCCC
Q 047470 606 HIDPNKAMDPG 616 (757)
Q Consensus 606 ~vd~~~Al~~~ 616 (757)
+||+.+|++..
T Consensus 456 ~vd~~~Al~~a 466 (471)
T 3t41_A 456 ELDVYKALNVA 466 (471)
T ss_dssp BBCHHHHTTTT
T ss_pred hhCHHHHHHHH
Confidence 99999999954
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-57 Score=517.61 Aligned_cols=334 Identities=22% Similarity=0.213 Sum_probs=61.3
Q ss_pred CceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEeccccc
Q 047470 36 HQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGK 115 (757)
Q Consensus 36 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 115 (757)
+++|||+||++...+..+.+.+++...+++... ..++++.|++.|+||+++++++++++|+++|+|++|++++.++
T Consensus 75 pg~YIV~lk~~~~~~~~~~~~~~l~a~~~~~g~----~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~ 150 (692)
T 2p4e_P 75 PGTYVVVLKEETHLSQSERTARRLQAQAARRGY----LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVF 150 (692)
T ss_dssp EEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTC----CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEE
T ss_pred CCcEEEEECCCCCHHHHHHHHHHHHHHHhhccc----ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccc
Confidence 569999999997654444444555544433322 4689999999999999999999999999999999999999876
Q ss_pred ccccCCCCccCCCCC------CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCce
Q 047470 116 LFTTHSPNFLGLKPN------SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRK 189 (757)
Q Consensus 116 ~~~~~s~~~~g~~~~------~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~k 189 (757)
.. ..+ |++... ...|..+.+|+||+|+|||||||++||+|.++.. |. +|.
T Consensus 151 ~~-~~p---WgL~~i~~~~~~~~~w~~~~~G~GV~VaVIDTGId~~HpdL~gr~~------~~-------~~~------- 206 (692)
T 2p4e_P 151 AQ-SIP---WNLERITPPRYRADEYQPPDGGSLVEVYLLDTSIQSDHREIEGRVM------VT-------DFE------- 206 (692)
T ss_dssp EC------------------------------------------------------------------------------
T ss_pred cC-CCC---cchhhcccccccccccccCCCCCCcEEEEEcCCCCCCChhhcCceE------ec-------ccc-------
Confidence 52 222 444332 2368888999999999999999999999986310 10 010
Q ss_pred eeeeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCC
Q 047470 190 LIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTE 269 (757)
Q Consensus 190 v~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~ 269 (757)
+..+ .++ ......+.|.+||||||||||+|+. .||||+|+|+++||++ +.
T Consensus 207 ------~~~d---~dg----~~~~~~~~D~~GHGTHVAGiIAg~~--------------~GVAP~A~L~~vKVl~---~~ 256 (692)
T 2p4e_P 207 ------NVPE---EDG----TRFHRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLN---CQ 256 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------cccC---CCC----CcccCCCCCCCCcHHHhhhHhhcCC--------------CccCCCCEEEEEEeec---CC
Confidence 0000 000 0001236788999999999999873 5999999999999998 66
Q ss_pred C-CCHHHHHHHHHHHHhC------CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCc
Q 047470 270 E-SAASDVLAGMDQAIAD------GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPW 340 (757)
Q Consensus 270 g-~~~~~i~~ai~~a~~~------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~ 340 (757)
| ++.+++++||+|++++ +++|||||||+..+ +.+..++.++.++|++||+||||+| +. ...++..|+
T Consensus 257 G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~s----~~l~~Ai~~A~~~GVlvVaAAGN~G~~~~~~sPA~~~~ 332 (692)
T 2p4e_P 257 GKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYS----RVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPE 332 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCCc----HHHHHHHHHHHHCCCEEEEECCCCCCCCCccCcccCCC
Confidence 6 7888999999999986 89999999997643 3445555588899999999999999 44 344677889
Q ss_pred eEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchh
Q 047470 341 ITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTY 420 (757)
Q Consensus 341 ~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~ 420 (757)
+|+|||++.+...
T Consensus 333 vItVGA~d~~~~~------------------------------------------------------------------- 345 (692)
T 2p4e_P 333 VITVGATNAQDQP------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEEcCCCCc-------------------------------------------------------------------
Confidence 9999985332100
Q ss_pred HHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCC
Q 047470 421 SQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRG 500 (757)
Q Consensus 421 ~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~G 500 (757)
...-+.||+||
T Consensus 346 ---------------------------------------------------------------------a~~ss~fSn~G 356 (692)
T 2p4e_P 346 ---------------------------------------------------------------------VTLGTLGTNFG 356 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------------------------------------cccccccCCCC
Confidence 00012389999
Q ss_pred CCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHh
Q 047470 501 PDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMT 580 (757)
Q Consensus 501 p~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~ 580 (757)
|. |||+|||++|+++++... ..|..++|||||||||||++|||++++|+|+|++||++|++
T Consensus 357 ~~--------vDI~APG~~I~St~~~~~-----------~~y~~~SGTSmAAPhVAG~aALlls~~P~ltp~qVk~~L~~ 417 (692)
T 2p4e_P 357 RC--------VDLFAPGEDIIGASSDCS-----------TCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIH 417 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Cc--------eeEEecCCcEEeeccCCC-----------CceEeccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 85 499999999999987642 17899999999999999999999999999999999999999
Q ss_pred cccccC
Q 047470 581 TAYPVN 586 (757)
Q Consensus 581 TA~~~~ 586 (757)
||.+..
T Consensus 418 tA~~~~ 423 (692)
T 2p4e_P 418 FSAKDV 423 (692)
T ss_dssp ------
T ss_pred hccccc
Confidence 997653
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=486.03 Aligned_cols=369 Identities=23% Similarity=0.335 Sum_probs=271.6
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|..+ |+||+|+|||||||++||+|.++ .+.+ +++.. .
T Consensus 14 ~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~--------------------------~~~~-~~~~~-----------~ 53 (441)
T 1y9z_A 14 TVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN--------------------------NVTG-TNNSG-----------T 53 (441)
T ss_dssp SSSCCTT--GGGCEEEEEESCCCTTSTTTTTS--------------------------EEEE-CCCTT-----------S
T ss_pred hhhhhcC--CCCcEEEEEcCCCCCCChhHhcC--------------------------cccC-cccCC-----------C
Confidence 4588865 77999999999999999999752 1111 11111 0
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCc--eEEeeeccccCCCCC-CCHHHHHHHHHHHHhC-
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRA--HVAMYKVLWATDTEE-SAASDVLAGMDQAIAD- 286 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A--~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~- 286 (757)
.+...+.|..||||||||||+|...+ ..+.||||+| +|+.+|+++ ..+ +..+++++||+||+++
T Consensus 54 ~~~~~~~d~~gHGT~vAgiia~~~~~---------~g~~GvAP~a~~~l~~~kv~~---~~g~~~~~~~~~ai~~a~~~~ 121 (441)
T 1y9z_A 54 GNWYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFN---EAGWGYSSSLVAAIDTCVNSG 121 (441)
T ss_dssp CCTTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEE---TTEECCSSCHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCcHHHHHHHHhcccCC---------CCceEecCCCCCEEEEEEEeC---CCCCcCHHHHHHHHHHHHHhc
Confidence 11124568899999999999997521 1247999995 999999998 666 7888999999999999
Q ss_pred CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEe------
Q 047470 287 GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTL------ 359 (757)
Q Consensus 287 g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~------ 359 (757)
|++|||||||.... ...+..++.++.++|++||+||||+| ....+++..|++|+|||++.+.....+...
T Consensus 122 g~~Vin~S~G~~~~---~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv 198 (441)
T 1y9z_A 122 GANVVTMSLGGSGS---TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEI 198 (441)
T ss_dssp CCSEEEECCCBSCC---BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEE
T ss_pred CCcEEEeCCCCCCC---CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEE
Confidence 99999999998642 23556677789999999999999999 777788888999999998776543221111
Q ss_pred -------------CCCc----EEEEEeecCCCCCC--ceee--eEEccC------CCCcccccCC--CCCCCCccceEEE
Q 047470 360 -------------DNGL----TFKGISYFPESVYI--TDAP--LYYGKN------DVNKSICHLG--SLNPDEVTGKVVF 410 (757)
Q Consensus 360 -------------~~~~----~~~g~~l~~~~~~~--~~~p--~~~~~~------~~~~~~c~~~--~~~~~~~~gkivl 410 (757)
+++. .+.|.+++....++ ..++ +.|..+ ......|.+. .++..+++|||++
T Consensus 199 ~ApG~~i~s~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g~~~~~~~~C~~~~~~~~~~~~~gkivl 278 (441)
T 1y9z_A 199 SGPGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICL 278 (441)
T ss_dssp EEECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEE
T ss_pred EeccCCeeccccCCCcccceeecccccccccccCcccccccCCccccccccccccccchhccccccccccCCCccccEEE
Confidence 1111 22233332111000 0000 111111 1123458743 5678899999999
Q ss_pred EeCCCCC-----chhHHHHHHHHcCCeEEEEeccCCCC----------CCCCccccEEEechhhHHHHHHHHhcCCCCce
Q 047470 411 CDNSNRI-----DTYSQMEEVDRAGAYAAIFLTDTPDI----------DSDEYYIPSLILPTSAGTSIRQYVTGKNKSKV 475 (757)
Q Consensus 411 ~~~g~~~-----~~~~k~~~~~~~Ga~~g~i~~~~~~~----------~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~ 475 (757)
|+|+. | .+.+|..++..+|+ .|+|++++... ....+.+|.+.++..+|+.|++|+.+..
T Consensus 279 ~~rg~-~~~~~~~~~~~~~~~~~aGa-~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~~---- 352 (441)
T 1y9z_A 279 VERVG-NQGSSYPEINSTKACKTAGA-KGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQST---- 352 (441)
T ss_dssp EECCS-CSSSSCTHHHHHHHHHHTTC-SEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSEE----
T ss_pred Eeccc-cCcccccHHHHHHHHHhcCC-eEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCCc----
Confidence 99987 4 78899999999999 99999987641 1235679999999999999998764311
Q ss_pred EEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhH
Q 047470 476 KSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHV 555 (757)
Q Consensus 476 ~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~V 555 (757)
.+ ++... ..|..++|||||||||
T Consensus 353 ------------------------------------t~--------~~~~~-------------~~y~~~sGTSmAaP~V 375 (441)
T 1y9z_A 353 ------------------------------------TV--------SNQGN-------------QDYEYYNGTSMATPHV 375 (441)
T ss_dssp ------------------------------------EE--------EEEEE-------------ESEEEECSHHHHHHHH
T ss_pred ------------------------------------cc--------ccccC-------------CCceeecccccCCccc
Confidence 11 11111 2799999999999999
Q ss_pred hHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCCCCceecCCchhhHHhhhcCCC
Q 047470 556 AGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGY 635 (757)
Q Consensus 556 AG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~d~~~~dy~~~l~~~~~ 635 (757)
||++|||+|+||+|+|++||++||+||+++...+ .+..||+|+||+.+|++ |+.|||+.++
T Consensus 376 AG~aALl~~~~p~~sp~~ik~~L~~TA~~~~~~g--------~~~~~G~G~vn~~~A~~-----------~~~~lc~~~~ 436 (441)
T 1y9z_A 376 SGVATLVWSYHPECSASQVRAALNATADDLSVAG--------RDNQTGYGMINAVAAKA-----------YLDESCTGPT 436 (441)
T ss_dssp HHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSS--------CBTTTBTCBCCHHHHHH-----------HHHHCTTCC-
T ss_pred chHHHHHHHHCCCCCHHHHHHHHHhhchhhccCC--------CcccccccccCHHHHHH-----------HHHhhhcCCC
Confidence 9999999999999999999999999999886443 45689999999999964 9999999886
Q ss_pred C
Q 047470 636 D 636 (757)
Q Consensus 636 ~ 636 (757)
.
T Consensus 437 ~ 437 (441)
T 1y9z_A 437 D 437 (441)
T ss_dssp -
T ss_pred C
Confidence 3
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-54 Score=494.34 Aligned_cols=377 Identities=23% Similarity=0.269 Sum_probs=272.9
Q ss_pred CCCCCceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCH---H-HHHHHH--cCCCe
Q 047470 32 RNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTP---S-QLSEIE--KSPAH 105 (757)
Q Consensus 32 ~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~---~-~~~~L~--~~p~V 105 (757)
.+..+++|||+||+.. ..++ +++.. +.++.+++. .+++++++++. + .+++|+ ++|+|
T Consensus 27 ~~~~~~~~IV~~k~~~------~~~~----~~~~~------g~~v~~~~~-~i~~~~~~~~~~~~~~~~~~l~~~~~~~V 89 (671)
T 1r6v_A 27 GEYTEGKILVGYNDRS------EVDK----IVKAV------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGI 89 (671)
T ss_dssp TSBCTTEEEEEESSHH------HHHH----HHHHH------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSE
T ss_pred CccCCccEEEEECCCc------CHHH----HHHhc------CCeEEEEcC-CCcEEEEEeCCcCHHHHHHHHHhccCCCc
Confidence 4557899999999863 1122 22222 467888886 68999999864 2 356676 48999
Q ss_pred EEEEeccccccccc---C------------------------CCCccCCCCC--CCC-CCCCCCCCccEEEEEecCCccC
Q 047470 106 LATYPESFGKLFTT---H------------------------SPNFLGLKPN--SGL-WPSARYGQGVIIGIIDTGIWPE 155 (757)
Q Consensus 106 ~~V~~~~~~~~~~~---~------------------------s~~~~g~~~~--~~~-~~~~~~G~Gv~VgVIDtGid~~ 155 (757)
++|||+..+++... . ....|++... +.+ |+. .+|+||+|||||||||++
T Consensus 90 ~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~ 168 (671)
T 1r6v_A 90 RYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGT 168 (671)
T ss_dssp EEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTT
T ss_pred eEEecCeEEEeccccccCcccccccccccccccccccccccccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCC
Confidence 99999977654310 0 0012332222 345 877 899999999999999999
Q ss_pred CccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCC
Q 047470 156 SESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHV 235 (757)
Q Consensus 156 Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~ 235 (757)
||+|.++- +.+...+.+... ....+..|.+||||||||||||..
T Consensus 169 HpdL~~~~--------------------------~~g~~~~~~~~~---------p~~~d~~d~~gHGThVAGiIAa~~- 212 (671)
T 1r6v_A 169 HPDLEGQV--------------------------IAGYRPAFDEEL---------PAGTDSSYGGSAGTHVAGTIAAKK- 212 (671)
T ss_dssp SGGGTTTB--------------------------CCEEEGGGTEEE---------CTTCBCCTTCSHHHHHHHHHHCCC-
T ss_pred CccccccE--------------------------EecccccCCCcC---------CCCCCCccCCCcchhhhhhhhccC-
Confidence 99998531 111111111000 001124467899999999999973
Q ss_pred CCCccccccCCceeeccCCceEEeeeccccC---CCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccCHHHHHH
Q 047470 236 EGVSHFGYAKGTARGIAPRAHVAMYKVLWAT---DTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIAS 311 (757)
Q Consensus 236 ~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~---~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~ 311 (757)
++ ..+.||||+|+|+++|+++.. ...+ .....+++||+||+++|++|||||||... +...+..++
T Consensus 213 ng--------~gv~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~---~s~~l~~Ai 281 (671)
T 1r6v_A 213 DG--------KGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAF 281 (671)
T ss_dssp SS--------SSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHH
T ss_pred CC--------CceEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCC---CCHHHHHHH
Confidence 11 124799999999999999820 0123 44567899999999999999999999864 345677777
Q ss_pred HHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCC
Q 047470 312 LSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDV 389 (757)
Q Consensus 312 ~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~ 389 (757)
..|.++|++||+||||+| .. ..+++..|++|+|||.+.+..
T Consensus 282 ~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~------------------------------------- 324 (671)
T 1r6v_A 282 DYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------------------------------------- 324 (671)
T ss_dssp HHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-------------------------------------
T ss_pred HHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC-------------------------------------
Confidence 889999999999999999 43 566777899999998522100
Q ss_pred CcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhc
Q 047470 390 NKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTG 469 (757)
Q Consensus 390 ~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~ 469 (757)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCcccc-----CCCccccceEe
Q 047470 470 KNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEI-----GNYELVTDYAL 544 (757)
Q Consensus 470 ~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~-----~~~~~~~~y~~ 544 (757)
...+++|||+||.. ||+|||++|+++++........ ........|..
T Consensus 325 --------------------~~~~a~fSn~G~~v--------dv~APG~~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~ 376 (671)
T 1r6v_A 325 --------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDY 376 (671)
T ss_dssp --------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEE
T ss_pred --------------------ceeeccccCCCCCe--------eEEecCCCEEeecCCCCccccccccccccccCCCceEE
Confidence 01478999999986 9999999999998764211000 00111247999
Q ss_pred eccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCCCCceecCCch
Q 047470 545 FSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQ 624 (757)
Q Consensus 545 ~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~d~~~~ 624 (757)
++|||||||||||++|||+|++|+++|.+||++|++||+++... ..+..||||+||+.+|++..|..+....
T Consensus 377 ~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~--------g~d~~~G~G~vna~~Al~~~l~~~~~~~ 448 (671)
T 1r6v_A 377 YQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN--------GWDHDTGYGLVKLDAALQGPLPTQGGVE 448 (671)
T ss_dssp EESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSS--------SCBTTTBTCBCCHHHHHHCCCCSSSEEE
T ss_pred ecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCC--------CCCCCcccceeCHHHHhhhhcCCCCCcc
Confidence 99999999999999999999999999999999999999988533 3567899999999999998777665444
Q ss_pred hh
Q 047470 625 DY 626 (757)
Q Consensus 625 dy 626 (757)
||
T Consensus 449 ~~ 450 (671)
T 1r6v_A 449 EF 450 (671)
T ss_dssp EE
T ss_pred ce
Confidence 44
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=419.91 Aligned_cols=254 Identities=34% Similarity=0.464 Sum_probs=214.4
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|..+++|+||+|+|||||| .+||+|. +...++|..+
T Consensus 14 ~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-----------------------------~~~~~~~~~~----------- 52 (269)
T 1gci_A 14 PAAHNRGLTGSGVKVAVLDTGI-STHPDLN-----------------------------IRGGASFVPG----------- 52 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCC-CCCTTCC-----------------------------EEEEEECSTT-----------
T ss_pred HHHHhcCCCCCCCEEEEECCCC-CCCHhhc-----------------------------ccCCcccCCC-----------
Confidence 4589999999999999999999 8999994 1223344321
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|..||||||||||+|... ...+.||||+|+|+.+|+++ ..+ +..+++++||+||++++++
T Consensus 53 --~~~~~d~~gHGT~vAgiia~~~~---------~~~~~GvAp~a~l~~~~v~~---~~g~~~~~~~~~ai~~a~~~~~~ 118 (269)
T 1gci_A 53 --EPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLG---ASGSGSVSSIAQGLEWAGNNGMH 118 (269)
T ss_dssp --CCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBC---TTSCBCHHHHHHHHHHHHHTTCS
T ss_pred --CCCCCCCCCChHHHHHHHhcCcC---------CCCcEEeCCCCEEEEEEeEC---CCCCcCHHHHHHHHHHHHHCCCe
Confidence 01256789999999999998731 11247999999999999998 555 7788999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|||||||... ....+..++.++.++|++||+||||+| ....++...|++|+||+.+.
T Consensus 119 Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------- 176 (269)
T 1gci_A 119 VANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------------- 176 (269)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------------
T ss_pred EEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecC-------------------
Confidence 9999999864 234677777788999999999999999 76777788899999997421
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T 1gci_A 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++||.+ ||+|||++|+++++.+
T Consensus 177 -----------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~~~~- 206 (269)
T 1gci_A 177 -----------------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPGS- 206 (269)
T ss_dssp -----------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETTT-
T ss_pred -----------------------------------------CCCCCCCCCCCCCc--------ceEecCCCeEeecCCC-
Confidence 23578999999975 9999999999998765
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccC
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHID 608 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd 608 (757)
.|..++|||||||||||++|||+|++|+|++.|||++|++||+++. ++..||||+||
T Consensus 207 ------------~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g-----------~~~~~G~G~vn 263 (269)
T 1gci_A 207 ------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG-----------STNLYGSGLVN 263 (269)
T ss_dssp ------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS-----------CHHHHTTCBCC
T ss_pred ------------CEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC-----------CCCCcccCccC
Confidence 8999999999999999999999999999999999999999999873 35689999999
Q ss_pred ccccCC
Q 047470 609 PNKAMD 614 (757)
Q Consensus 609 ~~~Al~ 614 (757)
+.+|++
T Consensus 264 ~~~A~~ 269 (269)
T 1gci_A 264 AEAATR 269 (269)
T ss_dssp HHHHTC
T ss_pred HHHHcC
Confidence 999985
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-50 Score=421.80 Aligned_cols=257 Identities=33% Similarity=0.429 Sum_probs=209.9
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|+.+..|+||+|+|||||||++||+|.++ ++..++|.++
T Consensus 21 ~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~~---------------------------~~~~~~~~~~----------- 62 (280)
T 1dbi_A 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN----------- 62 (280)
T ss_dssp HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT-----------
T ss_pred HHHHhhcCCCCCCEEEEEeCCcCCCChhhccC---------------------------cccceeccCC-----------
Confidence 45899988888999999999999999999742 3444555431
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|..||||||||||+|...+.. .+.||||+|+|+.+|+++ ..+ ++.+++++||+||+++|++
T Consensus 63 --~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~kv~~---~~g~~~~~~i~~ai~~a~~~g~~ 129 (280)
T 1dbi_A 63 --DYDPMDLNNHGTHVAGIAAAETNNAT--------GIAGMAPNTRILAVRALD---RNGSGTLSDIADAIIYAADSGAE 129 (280)
T ss_dssp --BSCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSSSCEEEEEECCC---TTSCCCHHHHHHHHHHHHHTTCS
T ss_pred --CCCCCCCCCcHHHHHHHHhCcCCCCC--------cceEeCCCCEEEEEEEEC---CCCCcCHHHHHHHHHHHHHCCCC
Confidence 02356889999999999999753322 247999999999999998 555 7889999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|||||||... ..+.+..++..+.++|++||+||||+| .....++..+++|+|||...
T Consensus 130 Vin~S~G~~~---~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------- 187 (280)
T 1dbi_A 130 VINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------------- 187 (280)
T ss_dssp EEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------------
T ss_pred EEEeCCCCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCC-------------------
Confidence 9999999864 235677777789999999999999999 66667778889999997421
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T 1dbi_A 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++||.. ||+|||++|+++++.+
T Consensus 188 -----------------------------------------~~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~~- 217 (280)
T 1dbi_A 188 -----------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITGN- 217 (280)
T ss_dssp -----------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETTT-
T ss_pred -----------------------------------------CCCcCCCCCCCCCc--------eEEEecCCeEeecCCC-
Confidence 23578999999865 9999999999998765
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccC
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHID 608 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd 608 (757)
.|..++|||||||||||++|||++ |.+++.+||++|++||+++.. ....||||+||
T Consensus 218 ------------~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~----------~~~~~G~G~vn 273 (280)
T 1dbi_A 218 ------------RYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISG----------TGTYFKYGRIN 273 (280)
T ss_dssp ------------EEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTT----------BTTTBSSEECC
T ss_pred ------------CEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCC----------CCCcccCCEEC
Confidence 899999999999999999999987 899999999999999998753 23579999999
Q ss_pred ccccCC
Q 047470 609 PNKAMD 614 (757)
Q Consensus 609 ~~~Al~ 614 (757)
+.+|++
T Consensus 274 ~~~A~~ 279 (280)
T 1dbi_A 274 SYNAVT 279 (280)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 999986
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-52 Score=451.04 Aligned_cols=302 Identities=22% Similarity=0.256 Sum_probs=197.8
Q ss_pred CCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCcee----eeeeeccc-hhhhccCC
Q 047470 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKL----IGARSFSK-GLQAAGIN 206 (757)
Q Consensus 132 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv----~g~~~~~~-~~~~~~~~ 206 (757)
.+|+++..|++|+|||||||||++||+|.+....+....|+..++........ .+..+ ...+.+.. .+...
T Consensus 22 ~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 97 (357)
T 4h6x_A 22 DLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYA-AFQSIRDQGLKGKEKEEALEAVI--- 97 (357)
T ss_dssp HHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHH-HHHHHHHHTCCSHHHHHHHHHHC---
T ss_pred HHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCccccc-ccccccCcccccccccccccccc---
Confidence 48999989999999999999999999999877777777787665432111000 00000 00000000 00000
Q ss_pred CCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCC--CCC-CCHHHHHHHHHHH
Q 047470 207 VSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATD--TEE-SAASDVLAGMDQA 283 (757)
Q Consensus 207 ~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~--~~g-~~~~~i~~ai~~a 283 (757)
.+..++.|.+||||||||||+|+.. +.+.||||+|+|+.+|++.... ..+ ....++++||+||
T Consensus 98 ----~~~~~~~D~~gHGThVAGiiag~~~----------~g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a 163 (357)
T 4h6x_A 98 ----PDTKDRIVLNDHACHVTSTIVGQEH----------SPVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLA 163 (357)
T ss_dssp ----TTTHHHHHHHHHHHHHHHHHHCCTT----------SSCCCSCTTSEEEEEECTTC----------CHHHHHHHHHH
T ss_pred ----CCCCCCcCCCCcHHHHHHHHhccCC----------CCceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHH
Confidence 1112345678999999999999742 2347999999999999975211 111 4456788999999
Q ss_pred HhCCCcEEEeCCCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCC
Q 047470 284 IADGVDIMSLSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDN 361 (757)
Q Consensus 284 ~~~g~dVIn~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~ 361 (757)
+++|++|||||||... .....+.+..++.++.++|++||+||||+| ....+++..|++|+|||+..
T Consensus 164 ~~~g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------ 231 (357)
T 4h6x_A 164 LELGANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKV------------ 231 (357)
T ss_dssp HHTTCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECT------------
T ss_pred HHcCCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEecc------------
Confidence 9999999999999865 344567788888899999999999999999 77777788889999997421
Q ss_pred CcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCC
Q 047470 362 GLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP 441 (757)
Q Consensus 362 ~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~ 441 (757)
T Consensus 232 -------------------------------------------------------------------------------- 231 (357)
T 4h6x_A 232 -------------------------------------------------------------------------------- 231 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeE
Q 047470 442 DIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVL 521 (757)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 521 (757)
.+.+++|||||+.. .||||+|||++|+
T Consensus 232 ------------------------------------------------~~~~~~fSn~G~~~-----~~~di~APG~~i~ 258 (357)
T 4h6x_A 232 ------------------------------------------------DGTPCHFSNWGGNN-----TKEGILAPGEEIL 258 (357)
T ss_dssp ------------------------------------------------TSSBCTTCC---CT-----TTTEEEEECSSEE
T ss_pred ------------------------------------------------CCcccccccCCCCC-----CccceeecCCCeE
Confidence 23678999999753 5899999999999
Q ss_pred ecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHh----CCCCCHHHHHHHHHhcccccCCCCCccccCCC
Q 047470 522 AAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAI----HRDWSPAAIRSAIMTTAYPVNFAENEIGVVPA 597 (757)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~ 597 (757)
++++.+. .|..++|||||||||||++|||+++ +|.|+++|||++|++||+++... ...
T Consensus 259 s~~~~~~------------~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~------~~~ 320 (357)
T 4h6x_A 259 GAQPCTE------------EPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPE------VVE 320 (357)
T ss_dssp ECCTTCS------------CCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC----------------
T ss_pred eccCCCC------------cccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCC------CCC
Confidence 9987652 5778999999999999999999965 56899999999999999988542 233
Q ss_pred CCCCCCCCccCccccCC
Q 047470 598 TPLDFGAGHIDPNKAMD 614 (757)
Q Consensus 598 ~~~~~G~G~vd~~~Al~ 614 (757)
.+..||+|+||+.+|++
T Consensus 321 ~~~~~G~G~vn~~~A~~ 337 (357)
T 4h6x_A 321 EPERCLRGFVNIPGAMK 337 (357)
T ss_dssp ----CTTCBCCHHHHHH
T ss_pred CcccceeEEecHHHHHH
Confidence 56789999999999998
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-50 Score=422.89 Aligned_cols=255 Identities=32% Similarity=0.455 Sum_probs=212.3
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|..+++|+||+|+|||||||++||+|. +...++|..+
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~-----------------------------~~~g~~~~~~----------- 53 (274)
T 1r0r_E 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG----------- 53 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT-----------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-----------------------------CCCCccccCC-----------
Confidence 458999999999999999999999999994 1223334321
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
.....|..||||||||||+|... ...+.||||+|+|+.+|+++ ..+ +..+++++||+||++++++
T Consensus 54 --~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~~v~~---~~g~~~~~~i~~ai~~a~~~~~~ 119 (274)
T 1r0r_E 54 --EAYNTDGNGHGTHVAGTVAALDN---------TTGVLGVAPSVSLYAVKVLN---SSGSGSYSGIVSGIEWATTNGMD 119 (274)
T ss_dssp --CCTTCCSSSHHHHHHHHHHCCSS---------SSBCCCSSTTSEEEEEECSC---TTSEECHHHHHHHHHHHHHTTCS
T ss_pred --CCCCCCCCCCHHHHHHHHHccCC---------CCceEEECCCCEEEEEEEEC---CCCCccHHHHHHHHHHHHHcCCC
Confidence 01246789999999999998731 11247999999999999998 655 7788999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC----CCcccCCCceEEeccccccccceeeEEeCCCcE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP----RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLT 364 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~----~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~ 364 (757)
|||||||... ..+.+..++.++.++|++||+||||+| .. ..++...|++|+||+...
T Consensus 120 Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------------- 181 (274)
T 1r0r_E 120 VINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------------- 181 (274)
T ss_dssp EEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------------
T ss_pred EEEeCCCCCC---CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecC---------------
Confidence 9999999864 235677777789999999999999999 42 334566678888887421
Q ss_pred EEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCC
Q 047470 365 FKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDID 444 (757)
Q Consensus 365 ~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~ 444 (757)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T 1r0r_E 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecc
Q 047470 445 SDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAV 524 (757)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 524 (757)
.+.++.||++||.+ ||+|||++|++++
T Consensus 182 ---------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s~~ 208 (274)
T 1r0r_E 182 ---------------------------------------------NSNRASFSSVGAEL--------EVMAPGAGVYSTY 208 (274)
T ss_dssp ---------------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEE
T ss_pred ---------------------------------------------CCCcCccCCCCCCc--------eEEeCCCCeEeec
Confidence 23578999999865 9999999999998
Q ss_pred cCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 047470 525 APNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGA 604 (757)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~ 604 (757)
+.+ .|..++|||||||||||++|||+|++|++++.+||++|++||+++. ++..|||
T Consensus 209 ~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g-----------~~~~~G~ 264 (274)
T 1r0r_E 209 PTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-----------SSFYYGK 264 (274)
T ss_dssp TTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----------CHHHHTT
T ss_pred CCC-------------CEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccC-----------CCCCccc
Confidence 765 8999999999999999999999999999999999999999999873 4568999
Q ss_pred CccCccccCC
Q 047470 605 GHIDPNKAMD 614 (757)
Q Consensus 605 G~vd~~~Al~ 614 (757)
|+||+.+|++
T Consensus 265 G~~~~~~A~~ 274 (274)
T 1r0r_E 265 GLINVEAAAQ 274 (274)
T ss_dssp CBCCHHHHTC
T ss_pred CccCHHHHhC
Confidence 9999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-50 Score=421.57 Aligned_cols=257 Identities=32% Similarity=0.484 Sum_probs=213.3
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++|+||+|+|||||||++||+|.. ...++|..+
T Consensus 14 ~~~~~~g~~G~gv~VaViDtGid~~h~~l~~-----------------------------~~g~~~~~~----------- 53 (281)
T 1to2_E 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPS----------- 53 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTT-----------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCCHHHcC-----------------------------cCCccccCC-----------
Confidence 3589999999999999999999999999952 222333221
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
+.....|..||||||||||+|... ...+.||||+|+|+.+|+++ ..+ +..++++++|+||++++++
T Consensus 54 -~~~~~~d~~gHGT~vAgiia~~~~---------~~g~~GvAp~a~l~~~kv~~---~~g~~~~~~i~~ai~~a~~~~~~ 120 (281)
T 1to2_E 54 -ETNPFQDNNSHGTHVAGTVAALNN---------SIGVLGVAPSASLYAVKVLG---ADGSGQYSWIINGIEWAIANNMD 120 (281)
T ss_dssp -CCCTTCCSSSHHHHHHHHHHCCSS---------SSSBCCSSTTSEEEEEECSC---TTSEECHHHHHHHHHHHHHTTCS
T ss_pred -CCCCCCCCCCcHHHHHHHHhccCC---------CCcceeeCCCCEEEEEEEeC---CCCCccHHHHHHHHHHHHHCCCc
Confidence 011236789999999999998731 11247999999999999998 555 6788999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC----CCcccCCCceEEeccccccccceeeEEeCCCcE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP----RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLT 364 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~----~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~ 364 (757)
|||||||... ..+.+..++..+.++|++||+||||+| .. ..++...|++|+||+...
T Consensus 121 Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~--------------- 182 (281)
T 1to2_E 121 VINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------------- 182 (281)
T ss_dssp EEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------------
T ss_pred EEEECCcCCC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecC---------------
Confidence 9999999864 235677777788999999999999999 42 344566678888887411
Q ss_pred EEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCC
Q 047470 365 FKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDID 444 (757)
Q Consensus 365 ~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~ 444 (757)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T 1to2_E 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecc
Q 047470 445 SDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAV 524 (757)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 524 (757)
.+.++.||++||.. ||+|||++|++++
T Consensus 183 ---------------------------------------------~~~~~~fS~~G~~~--------di~APG~~i~s~~ 209 (281)
T 1to2_E 183 ---------------------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTL 209 (281)
T ss_dssp ---------------------------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEE
T ss_pred ---------------------------------------------CCCcCCcCCCCCCc--------eEEecCCCeEeec
Confidence 23578999999965 9999999999998
Q ss_pred cCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 047470 525 APNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGA 604 (757)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~ 604 (757)
+.+ .|..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++..|||
T Consensus 210 ~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g-----------~~~~~G~ 265 (281)
T 1to2_E 210 PGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG-----------DSFYYGK 265 (281)
T ss_dssp TTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-----------CHHHHTT
T ss_pred CCC-------------CEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccC-----------CCCCccc
Confidence 765 8999999999999999999999999999999999999999999873 4568999
Q ss_pred CccCccccCCC
Q 047470 605 GHIDPNKAMDP 615 (757)
Q Consensus 605 G~vd~~~Al~~ 615 (757)
|+||+.+|+++
T Consensus 266 G~v~~~~a~~~ 276 (281)
T 1to2_E 266 GLINVQAAAQH 276 (281)
T ss_dssp CBCCHHHHTSS
T ss_pred ceecHHHHhhh
Confidence 99999999985
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-50 Score=432.41 Aligned_cols=263 Identities=30% Similarity=0.464 Sum_probs=214.0
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|..+++|+||+|||||||||++||+|.+ ++.+.++|..++..
T Consensus 31 ~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~---------------------------~~~~~~~~~~~~~~-------- 75 (327)
T 2x8j_A 31 PAVWRASAKGAGQIIGVIDTGCQVDHPDLAE---------------------------RIIGGVNLTTDYGG-------- 75 (327)
T ss_dssp HHHHHHHGGGTTCEEEEEESCCCTTCTTTGG---------------------------GEEEEEECSSGGGG--------
T ss_pred HHHHhcCCCCCCCEEEEEcCCCCCCChhHhh---------------------------cccCCccccCCCCC--------
Confidence 4589999999999999999999999999974 24555566543221
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHh----
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIA---- 285 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~---- 285 (757)
+.....|..||||||||||+|... + ..+.||||+|+|+.+|+++ ..+ +..+++++||+||++
T Consensus 76 -~~~~~~d~~gHGT~VAgiia~~~~-~--------~g~~GvAp~a~l~~~kv~~---~~g~~~~~~i~~ai~~a~~~~~~ 142 (327)
T 2x8j_A 76 -DETNFSDNNGHGTHVAGTVAAAET-G--------SGVVGVAPKADLFIIKALS---GDGSGEMGWIAKAIRYAVDWRGP 142 (327)
T ss_dssp -CTTCCCCSSSHHHHHHHHHHCCCC-S--------SBCCCSSTTCEEEEEECSC---TTSEECHHHHHHHHHHHHHCCCT
T ss_pred -CCCCCCCCCCchHHHHHHHhccCC-C--------CCcEeeCCCCEEEEEEeEC---CCCCcCHHHHHHHHHHHHhhccc
Confidence 112356889999999999999731 1 1247999999999999998 666 778899999999999
Q ss_pred --CCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-----CCcccCCCceEEeccccccccceeeE
Q 047470 286 --DGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-----RSIHNGAPWITTVGAGTLDRSFHATV 357 (757)
Q Consensus 286 --~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-----~~~~~~ap~~itVgas~~~~~~~~~~ 357 (757)
.+++|||||||... ..+.+..++..+.++|++||+||||+| .. ..+++..|++|+|||++.
T Consensus 143 ~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~-------- 211 (327)
T 2x8j_A 143 KGEQMRIITMSLGGPT---DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDF-------- 211 (327)
T ss_dssp TSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECT--------
T ss_pred ccCCceEEEECCCcCC---CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECC--------
Confidence 89999999999864 235667777788999999999999999 42 345566788999987421
Q ss_pred EeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEe
Q 047470 358 TLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFL 437 (757)
Q Consensus 358 ~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~ 437 (757)
T Consensus 212 -------------------------------------------------------------------------------- 211 (327)
T 2x8j_A 212 -------------------------------------------------------------------------------- 211 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCC
Q 047470 438 TDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPG 517 (757)
Q Consensus 438 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 517 (757)
.+.++.||++||.+ ||+|||
T Consensus 212 ----------------------------------------------------~~~~~~fS~~G~~~--------di~APG 231 (327)
T 2x8j_A 212 ----------------------------------------------------DLRLSDFTNTNEEI--------DIVAPG 231 (327)
T ss_dssp ----------------------------------------------------TCCBSCC---CCCC--------SEEEEC
T ss_pred ----------------------------------------------------CCCCCCccCCCCCc--------eEecCc
Confidence 23578999999865 999999
Q ss_pred CCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHh-----CCCCCHHHHHHHHHhcccccCCCCCcc
Q 047470 518 VDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAI-----HRDWSPAAIRSAIMTTAYPVNFAENEI 592 (757)
Q Consensus 518 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-----~p~~s~~~ik~~L~~TA~~~~~~~~~~ 592 (757)
++|+++++.+ .|..++|||||||+|||++|||+|+ +|.+++.+||++|++||+++..
T Consensus 232 ~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~----- 293 (327)
T 2x8j_A 232 VGIKSTYLDS-------------GYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF----- 293 (327)
T ss_dssp SSEEEECSTT-------------CEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS-----
T ss_pred CceEeecCCC-------------CEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC-----
Confidence 9999998765 7999999999999999999999999 9999999999999999998731
Q ss_pred ccCCCCCCCCCCCccCccccCCC
Q 047470 593 GVVPATPLDFGAGHIDPNKAMDP 615 (757)
Q Consensus 593 ~~~~~~~~~~G~G~vd~~~Al~~ 615 (757)
++..||||+||+.+|++.
T Consensus 294 -----~~~~~G~G~vd~~~A~~~ 311 (327)
T 2x8j_A 294 -----TAQAEGNGFLTLDLVERI 311 (327)
T ss_dssp -----CHHHHTTCEECTTHHHHH
T ss_pred -----CCCceeeeEECHHHHHHh
Confidence 456899999999999983
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-49 Score=468.88 Aligned_cols=357 Identities=23% Similarity=0.276 Sum_probs=250.5
Q ss_pred CCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC---CCHHHHHHHHHHHHh-----CCC
Q 047470 217 RDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE---SAASDVLAGMDQAIA-----DGV 288 (757)
Q Consensus 217 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g---~~~~~i~~ai~~a~~-----~g~ 288 (757)
.|++||||||||||||.. ++ ..+.||||+|+|+.+|+++ ..+ .+..+++.+|.+|++ +|+
T Consensus 267 ~D~~GHGThVAGIIAa~~-N~--------~g~~GVAP~AkI~~vKVld---~~~g~~~t~s~l~~AI~~Aid~a~~~~ga 334 (1354)
T 3lxu_X 267 GMSSPHGTHVSSIASGNH-SS--------RDVDGVAPNAKIVSMTIGD---GRLGSMETGTALVRAMTKVMELCRDGRRI 334 (1354)
T ss_dssp ECCCHHHHHHHHHHCCCC-SS--------SSSCCSCTTCEEEEEECBC---TTTSSCBCHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCcHHHHHHHHhcCC-CC--------CCceeecCCCEEEEEEecc---CCCCcccChHHHHHHHHHHHHHHhhcCCc
Confidence 578999999999999985 22 2247999999999999998 432 356778888888887 799
Q ss_pred cEEEeCCCCCCCCCccCHHHHHHHHHH-hCCcEEEEecCCCC-CCCC--ccc--CCCceEEeccccccccceeeEEeCCC
Q 047470 289 DIMSLSLGFDQTPYFNDVIAIASLSAI-ENGIVVVCAAGNDG-FPRS--IHN--GAPWITTVGAGTLDRSFHATVTLDNG 362 (757)
Q Consensus 289 dVIn~SlG~~~~~~~~~~~~~a~~~a~-~~Gi~vV~AAGN~g-~~~~--~~~--~ap~~itVgas~~~~~~~~~~~~~~~ 362 (757)
+|||||||........+.+..++.++. ++|++||+||||+| +..+ .++ .++++|+|||++.+......+..
T Consensus 335 dVINmS~G~~~~~~~~~~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~--- 411 (1354)
T 3lxu_X 335 DVINMSYGEHANWSNSGRIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM--- 411 (1354)
T ss_dssp CEEEECCCCCCSCSSCCHHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC-------
T ss_pred eEEEcCCccCCCCCccHHHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc---
Confidence 999999999763334567777777776 89999999999999 5444 344 37999999996443221000000
Q ss_pred cEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 363 LTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 363 ~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
+
T Consensus 412 -------------------------------------------------------------------~------------ 412 (1354)
T 3lxu_X 412 -------------------------------------------------------------------R------------ 412 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------------------------------------------------------------------c------------
Confidence 0
Q ss_pred CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEe
Q 047470 443 IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLA 522 (757)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 522 (757)
....+.+++|||+||+. ++++||||+|||++|++
T Consensus 413 --------------------------------------------~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~S 446 (1354)
T 3lxu_X 413 --------------------------------------------EKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIAS 446 (1354)
T ss_dssp -------------------------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC-----
T ss_pred --------------------------------------------cCCCCccccccCCCCCc--cCCCcceEEecCceEEE
Confidence 01124689999999998 68999999999999999
Q ss_pred cccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHH----hCCCCCHHHHHHHHHhcccccCCCCCccccCCCC
Q 047470 523 AVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKA----IHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPAT 598 (757)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~ 598 (757)
+..... ..|..++|||||||||||++|||++ .+|+|++.+||++|++||+++.. ..
T Consensus 447 t~~~~~-----------~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~---------~~ 506 (1354)
T 3lxu_X 447 VPQFTM-----------SKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGY---------VD 506 (1354)
T ss_dssp ---------------------CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTT---------SC
T ss_pred eecCCC-----------CceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCC---------CC
Confidence 755331 2789999999999999999999986 79999999999999999998853 24
Q ss_pred CCCCCCCccCccccCCCCceecCCchhhHHhhhcCCCCcc-ceeeeeeccccCCCCCCCCCCCCeEEeeecCCCceEEEE
Q 047470 599 PLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCGLGYDEK-QMKAVIRRNQWNCSQESTDLNYPSFAAVFTNETTAKNFS 677 (757)
Q Consensus 599 ~~~~G~G~vd~~~Al~~~lv~d~~~~dy~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~ln~ps~~~~~~~~~~~~~~~ 677 (757)
++.||||+||+.+|++..+.|+..+++|+.|+|..+.... .|.+-. .. + .-| + ...++|+
T Consensus 507 ~~~~G~GlLDa~~AV~~a~~~~~~p~~~v~f~~~v~~~~~rgIylR~---~~-~-------~~~--~------~~tv~V~ 567 (1354)
T 3lxu_X 507 PFAQGHGLLNVEKAFEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQ---GV-Q-------RNS--I------DYNVYIE 567 (1354)
T ss_dssp TTTSSSSBCCHHHHHHHHHTTTTCGGGGEEEEEEETTTTBSSEEECS---SC-C-------CSC--E------EEEEEEE
T ss_pred cccccCCEeCHHHHHHHHHhcCCCCccceEEEEEecCCCCCceEEec---cc-c-------CCc--e------EEEEEEe
Confidence 5689999999999999999999999999999999885433 332211 10 1 000 0 0022333
Q ss_pred EEEeecC---CC-ceeE--EEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEEC----CccE
Q 047470 678 RVVKNVG---AE-DSIY--RAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQ----YNHT 747 (757)
Q Consensus 678 rtvtnv~---~~-~~ty--~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~----~~~~ 747 (757)
-++.|.. .. ...| ++.+.... .+...|+.|.+. ++.++|.|+|+++....+.++++|...|. .++.
T Consensus 568 p~f~~~~~~~~~~~i~f~~~l~L~~t~--~wv~~p~~l~l~--~~~r~~~v~vDp~~L~~G~h~~~v~~~D~~~~~~gp~ 643 (1354)
T 3lxu_X 568 PIFYNDKEADPKDKFNFNVRLNLIASQ--PWVQCGAFLDLS--YGTRSIAVRVDPTGLQPGVHSAVIRAYDTDCVQKGSL 643 (1354)
T ss_dssp EEESSCSCSSSTTCSCCCCEEEEEESS--TTEEECSCEECT--TSCEEEEEEECGGGCCSEEEEEEEEEEESSCTTSCCS
T ss_pred eeecCcccCChhhccceEEEEEEecCC--Cceecccceeec--CCCceEEEEECCCCCCCcceeEEEEEEEcCCcccCce
Confidence 3342211 11 1112 22222221 233347777664 78899999999998889999999999987 4799
Q ss_pred EEEEEEEEe
Q 047470 748 VSSPVVAIK 756 (757)
Q Consensus 748 v~~P~~v~~ 756 (757)
.|+||.|.+
T Consensus 644 f~ipvTv~~ 652 (1354)
T 3lxu_X 644 FEIPVTVVQ 652 (1354)
T ss_dssp EEEEEEEEE
T ss_pred EEeeEEEEe
Confidence 999999975
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-49 Score=420.06 Aligned_cols=280 Identities=29% Similarity=0.353 Sum_probs=221.1
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.....
T Consensus 16 ~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~---------------------------~~~~~~~~~~~~--------- 59 (310)
T 2ixt_A 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT--------- 59 (310)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS---------
T ss_pred hhhhhccCCCCCcEEEEEecCCCCCCHHHhhc---------------------------ccccccccCCCC---------
Confidence 56999999999999999999999999999742 334444543210
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCC-
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGV- 288 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~- 288 (757)
.......|..||||||||||+|.... ....+.||||+|+|+.+|+++ ..+ +..+++++||+||+++++
T Consensus 60 ~~~~~~~d~~gHGT~vAgiia~~~~~-------n~~g~~GvAp~a~l~~~~v~~---~~g~~~~~~~~~ai~~a~~~~~~ 129 (310)
T 2ixt_A 60 PINNSCTDRNGHGTHVAGTALADGGS-------DQAGIYGVAPDADLWAYKVLL---DSGSGYSDDIAAAIRHAADQATA 129 (310)
T ss_dssp CEETCCCCSSSHHHHHHHHHHCBCCT-------TSCSCBCSCTTSEEEEEECSC---TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHhccCCC-------CCCceEEECCCCEEEEEEEEc---CCCCCcHHHHHHHHHHHHHhhhc
Confidence 01123567899999999999987421 122347999999999999998 555 688899999999999988
Q ss_pred ----cEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-C--CCCcccCCCceEEeccccccccceeeEEeCC
Q 047470 289 ----DIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-F--PRSIHNGAPWITTVGAGTLDRSFHATVTLDN 361 (757)
Q Consensus 289 ----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~--~~~~~~~ap~~itVgas~~~~~~~~~~~~~~ 361 (757)
+|||||||... ....+..++.++.++|++||+||||+| . ...+++..|++|+|||.....
T Consensus 130 ~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~---------- 196 (310)
T 2ixt_A 130 TGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ---------- 196 (310)
T ss_dssp HTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE----------
T ss_pred cCCCeEEEEcCCCCC---CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc----------
Confidence 99999999874 245667777788999999999999999 5 345566778999999842100
Q ss_pred CcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCC
Q 047470 362 GLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP 441 (757)
Q Consensus 362 ~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~ 441 (757)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCC--ccccccCCCCCCCC----CCCCCceEEe
Q 047470 442 DIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAP--HVASFSSRGPDPIS----PGILKPDIVA 515 (757)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~a~fSs~Gp~~~~----~~~lKPDI~A 515 (757)
..+ .++.||++||.... ..+.||||+|
T Consensus 197 -----------------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~A 229 (310)
T 2ixt_A 197 -----------------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISA 229 (310)
T ss_dssp -----------------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEE
T ss_pred -----------------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEEC
Confidence 011 56889999995320 1245999999
Q ss_pred CCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccC
Q 047470 516 PGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVV 595 (757)
Q Consensus 516 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~ 595 (757)
||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||++.+..+. ....
T Consensus 230 pG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~-~~a~ 295 (310)
T 2ixt_A 230 PGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGG-YGAA 295 (310)
T ss_dssp ECSSEEEECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBS-TTCC
T ss_pred CCCCEeeecCCC-------------CEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCC-cccc
Confidence 999999998765 79999999999999999999999999999999999999999998864321 1134
Q ss_pred CCCCCCCCCCccCcc
Q 047470 596 PATPLDFGAGHIDPN 610 (757)
Q Consensus 596 ~~~~~~~G~G~vd~~ 610 (757)
+.++..||||++|+.
T Consensus 296 ~g~d~~~G~G~~~vq 310 (310)
T 2ixt_A 296 IGDDYASGFGFARVQ 310 (310)
T ss_dssp SSSBTTTBTCBCCC-
T ss_pred cCCccccccceeecC
Confidence 667889999999963
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-49 Score=413.10 Aligned_cols=256 Identities=32% Similarity=0.416 Sum_probs=214.8
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|+.. +|+||+|+|||||||++||+|.+ +++..++|.++
T Consensus 21 ~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~---------------------------~~~~~~~~~~~----------- 61 (279)
T 1thm_A 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN----------- 61 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT-----------
T ss_pred HHHHhcC-CCCCCEEEEEccCCCCCCcchhc---------------------------CccccccccCC-----------
Confidence 4588876 79999999999999999999974 24444555432
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|..||||||||||+|...++. .+.||||+|+|+.+|+++ ..+ ++.+++++||+||++++++
T Consensus 62 --~~~~~d~~gHGT~vAgiia~~~~n~~--------g~~GvAp~a~l~~~~v~~---~~g~~~~~~~~~ai~~a~~~g~~ 128 (279)
T 1thm_A 62 --DSTPQNGNGHGTHCAGIAAAVTNNST--------GIAGTAPKASILAVRVLD---NSGSGTWTAVANGITYAADQGAK 128 (279)
T ss_dssp --BSCCCCSSSHHHHHHHHHHCCCSSSS--------SCCCSSTTCEEEEEECSC---TTSCCCHHHHHHHHHHHHHTTCS
T ss_pred --CCCCCCCCCcHHHHHHHHhCccCCCC--------ccEEeCCCCEEEEEEeeC---CCCCccHHHHHHHHHHHHHCCCC
Confidence 02356789999999999999754322 247999999999999998 555 7788999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|||||||... ..+.+..++.++.++|++||+||||+| ....++...+++|+||++..
T Consensus 129 Vin~S~G~~~---~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~------------------- 186 (279)
T 1thm_A 129 VISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------------- 186 (279)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------------
T ss_pred EEEEecCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCC-------------------
Confidence 9999999864 235677777789999999999999999 76677788889999997421
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 1thm_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++||.+ ||+|||++|+++++.+
T Consensus 187 -----------------------------------------~~~~~~fS~~G~~~--------dv~APG~~i~s~~~~~- 216 (279)
T 1thm_A 187 -----------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS- 216 (279)
T ss_dssp -----------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETTT-
T ss_pred -----------------------------------------CCCcCCcCCCCCce--------EEEEcCCCeEEEeCCC-
Confidence 23578999999875 9999999999998875
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccC
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHID 608 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd 608 (757)
.|..++|||||||||||++||| ++|.+++++||++|++||+++... ...||||+||
T Consensus 217 ------------~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~----------~~~~G~G~vn 272 (279)
T 1thm_A 217 ------------TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGT----------GTYWAKGRVN 272 (279)
T ss_dssp ------------EEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTB----------TTTBSSEECC
T ss_pred ------------CEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCC----------CccccCCeeC
Confidence 8999999999999999999999 589999999999999999988542 2479999999
Q ss_pred ccccCC
Q 047470 609 PNKAMD 614 (757)
Q Consensus 609 ~~~Al~ 614 (757)
+.+|++
T Consensus 273 ~~~A~~ 278 (279)
T 1thm_A 273 AYKAVQ 278 (279)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 999875
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-50 Score=422.80 Aligned_cols=265 Identities=25% Similarity=0.307 Sum_probs=208.1
Q ss_pred CCCC-CccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCC
Q 047470 137 ARYG-QGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDS 215 (757)
Q Consensus 137 ~~~G-~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~ 215 (757)
.++| +||+|||||||||++||+|.+.. +.+ +.+... .....
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~~--------------------------~~~-~~~~~~-----------~~~~~ 44 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGAD--------------------------LTV-LPTLAP-----------TAARS 44 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTCE--------------------------EEE-CCCSSC-----------CCCCT
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCCe--------------------------eec-CcCCCC-----------CCCCC
Confidence 3578 79999999999999999998531 111 111110 01112
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEEEeCC
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSL 295 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVIn~Sl 295 (757)
..|.+||||||||||+|+.. +.+.||||+|+|+.+|++... ..+.+..++++||+||++++++||||||
T Consensus 45 d~~~~gHGT~VAGiiag~~~----------~~~~GvAp~a~l~~~kv~~~~-~~~~~~~~i~~ai~~a~~~~~~Vin~S~ 113 (282)
T 3zxy_A 45 DGFMSAHGTHVASIIFGQPE----------TSVPGIAPQCRGLIVPIFSDD-RRRITQLDLARGIERAVNAGAHIINISG 113 (282)
T ss_dssp TCHHHHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEEEECSCSS-SSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CCCCCCcccceeehhhccCC----------ceeeeeccccceEeeEeeccc-cccchHHHHHHHHHHhhccCCeEEeccC
Confidence 23457899999999998742 224799999999999998621 2236788899999999999999999999
Q ss_pred CCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCC
Q 047470 296 GFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPE 373 (757)
Q Consensus 296 G~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~ 373 (757)
|... .......+..++..+.++|+++|+||||+| .....+...|++|+|||...
T Consensus 114 G~~~~~~~~~~~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------------ 169 (282)
T 3zxy_A 114 GELTDFGEADGWLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDD------------------------ 169 (282)
T ss_dssp CEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECT------------------------
T ss_pred ccccccccccHHHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcC------------------------
Confidence 9764 233345677777789999999999999999 77777788899999997421
Q ss_pred CCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEE
Q 047470 374 SVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSL 453 (757)
Q Consensus 374 ~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~ 453 (757)
T Consensus 170 -------------------------------------------------------------------------------- 169 (282)
T 3zxy_A 170 -------------------------------------------------------------------------------- 169 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCcccc
Q 047470 454 ILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEI 533 (757)
Q Consensus 454 ~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~ 533 (757)
.+.++.||++|+.. .||||+|||++|+++++.+
T Consensus 170 ------------------------------------~~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~~~------ 202 (282)
T 3zxy_A 170 ------------------------------------HGHPLDFSNWGSTY-----EQQGILAPGEDILGAKPGG------ 202 (282)
T ss_dssp ------------------------------------TSCBCSSSCCCHHH-----HHHEEEEECSSEEEECTTS------
T ss_pred ------------------------------------CCccccccCCCCCc-----cccceeccCcceeeecCCC------
Confidence 23578899999753 5889999999999998876
Q ss_pred CCCccccceEeeccccchhhhHhHHHHHHHHhC----CCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCc
Q 047470 534 GNYELVTDYALFSGTSMAAPHVAGVAALLKAIH----RDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDP 609 (757)
Q Consensus 534 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~----p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~ 609 (757)
.|..++|||||||||||++|||++++ |.++|+|||++|++||+++... .+.....||+|+||+
T Consensus 203 -------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~------~~~~~~~~G~G~ln~ 269 (282)
T 3zxy_A 203 -------GTERLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDD------APEQARRCLAGRLNV 269 (282)
T ss_dssp -------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC-------------CGGGTTCBCCH
T ss_pred -------ceeecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCC------CCCccCceeeeEeCH
Confidence 89999999999999999999999875 7899999999999999987542 234567899999999
Q ss_pred cccCC
Q 047470 610 NKAMD 614 (757)
Q Consensus 610 ~~Al~ 614 (757)
.+|++
T Consensus 270 ~~A~~ 274 (282)
T 3zxy_A 270 SGAFT 274 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99987
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-49 Score=425.87 Aligned_cols=263 Identities=30% Similarity=0.441 Sum_probs=215.7
Q ss_pred CCCCCCCCCCC--ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCC
Q 047470 131 SGLWPSARYGQ--GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVS 208 (757)
Q Consensus 131 ~~~~~~~~~G~--Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~ 208 (757)
+.+|+.+ +|+ ||+|+|||||||++||+|.++ +...++|..+...
T Consensus 18 ~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~~---------------------------~~~~~~~~~~~~~------ 63 (320)
T 2z30_A 18 PSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAAN---------------------------IAWCVSTLRGKVS------ 63 (320)
T ss_dssp GGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGGG---------------------------EEEEEECGGGCCB------
T ss_pred HHHHHhc-CCCcCCeEEEEECCCCCCCChhHhcc---------------------------cccCccccCCccC------
Confidence 4689988 999 999999999999999999742 3333444332100
Q ss_pred CcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC-
Q 047470 209 KEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD- 286 (757)
Q Consensus 209 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~- 286 (757)
.......|..||||||||||+|.. + ...+.||||+|+|+.+|+++ ..+ +..+++++||+||+++
T Consensus 64 --~~~~~~~d~~gHGT~vAgiia~~~-n--------~~g~~GvAp~a~l~~~~v~~---~~g~~~~~~i~~ai~~a~~~~ 129 (320)
T 2z30_A 64 --TKLRDCADQNGHGTHVIGTIAALN-N--------DIGVVGVAPGVQIYSVRVLD---ARGSGSYSDIAIGIEQAILGP 129 (320)
T ss_dssp --CCHHHHBCSSSHHHHHHHHHHCCS-S--------SBSCCCSSTTCEEEEEECSC---TTSEEEHHHHHHHHHHHHHTT
T ss_pred --CCCCCCCCCCCCHHHHHHHHHccc-C--------CCceEeeCCCCEEEEEEeeC---CCCCccHHHHHHHHHHHHhCc
Confidence 000123578999999999999862 1 11247999999999999998 666 7788999999999987
Q ss_pred -------------------CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEecc
Q 047470 287 -------------------GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGA 346 (757)
Q Consensus 287 -------------------g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVga 346 (757)
+++|||||||... ....+..++.++.++|++||+||||+| ....+++..|++|+|||
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga 206 (320)
T 2z30_A 130 DGVADKDGDGIIAGDPDDDAAEVISMSLGGPA---DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGA 206 (320)
T ss_dssp TTCSCTTSSSCCTTCTTSCCCSEEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEE
T ss_pred ccccccccccccccccccCCceEEEecCCCCC---CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEe
Confidence 9999999999865 234566677788999999999999999 76777888899999998
Q ss_pred ccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHH
Q 047470 347 GTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEV 426 (757)
Q Consensus 347 s~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~ 426 (757)
...
T Consensus 207 ~~~----------------------------------------------------------------------------- 209 (320)
T 2z30_A 207 IDS----------------------------------------------------------------------------- 209 (320)
T ss_dssp ECT-----------------------------------------------------------------------------
T ss_pred eCC-----------------------------------------------------------------------------
Confidence 421
Q ss_pred HHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCC
Q 047470 427 DRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISP 506 (757)
Q Consensus 427 ~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~ 506 (757)
.+.++.||++||
T Consensus 210 ---------------------------------------------------------------~~~~~~~S~~g~----- 221 (320)
T 2z30_A 210 ---------------------------------------------------------------NDNIASFSNRQP----- 221 (320)
T ss_dssp ---------------------------------------------------------------TSCBCTTSCSSC-----
T ss_pred ---------------------------------------------------------------CCCcCcccCCCC-----
Confidence 235789999996
Q ss_pred CCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhC-------------CCCCHHH
Q 047470 507 GILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIH-------------RDWSPAA 573 (757)
Q Consensus 507 ~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-------------p~~s~~~ 573 (757)
+|+|||++|+++++.+ .|..++|||||||||||++|||+|++ |.+++.+
T Consensus 222 -----~v~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~ 283 (320)
T 2z30_A 222 -----EVSAPGVDILSTYPDD-------------SYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNT 283 (320)
T ss_dssp -----SEEEECSSEEEEETTT-------------EEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTS
T ss_pred -----CEEeCCCCeEEeccCC-------------CeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHH
Confidence 7899999999998765 89999999999999999999999999 9999999
Q ss_pred HHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCCC
Q 047470 574 IRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDP 615 (757)
Q Consensus 574 ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 615 (757)
||++|++||+++.. +..+..||||+||+.+|++.
T Consensus 284 v~~~L~~ta~~~~~--------~g~~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 284 VRGILHITADDLGP--------TGWDADYGYGVVRAALAVQA 317 (320)
T ss_dssp HHHHHHHHSBCCSS--------SSSBTTTBTCBCCHHHHHHH
T ss_pred HHHHHHhhCccCCC--------CCCCCCcCCceeCHHHHHHH
Confidence 99999999998843 33567899999999999873
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-49 Score=423.29 Aligned_cols=270 Identities=26% Similarity=0.365 Sum_probs=214.6
Q ss_pred CCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcC
Q 047470 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEY 211 (757)
Q Consensus 132 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~ 211 (757)
++|+.+..++||+|||||||||++||+|.++ .+.+..+|..+
T Consensus 12 ~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~--------------------------~~~~~~~~~~~------------ 53 (306)
T 4h6w_A 12 KLWSETRGDPKICVAVLDGIVDQNHPCFIGA--------------------------DLTRLPSLVSG------------ 53 (306)
T ss_dssp HHHHHCSCCTTCEEEEESSCCCTTSGGGTTC--------------------------EEEECC-----------------
T ss_pred HHHhhhCCCCCCEEEEEcCCCCCCChhHcCC--------------------------cccCCCcccCC------------
Confidence 3899887779999999999999999999853 12222223221
Q ss_pred CCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcEE
Q 047470 212 DFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIM 291 (757)
Q Consensus 212 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dVI 291 (757)
+.....|.+||||||||||+|+.. +.+.||||+|+|+.+|++... .......++++||+||++++++||
T Consensus 54 ~~~~~~d~~gHGThVAGiiag~~~----------~~~~GVAp~a~l~~~kv~~~~-~~~~~~~~i~~ai~~a~~~g~~vi 122 (306)
T 4h6w_A 54 EANANGSMSTHGTHVASIIFGQHD----------SPVTGIAPQCRGLIVPVFADE-SLKLSQLDLSRAIEQAVNNGANII 122 (306)
T ss_dssp -----CCCCHHHHHHHHHHHCCTT----------SSSCCSSTTSEEEECCCCCSS-SCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred CCCCCCCCCCchHHHHHHHHcccc----------CCcceeccccccceeeccccc-cccchHHHHHHHHHHhhcccceee
Confidence 111245678999999999998742 234799999999999998621 123678889999999999999999
Q ss_pred EeCCCCCC-CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEe
Q 047470 292 SLSLGFDQ-TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGIS 369 (757)
Q Consensus 292 n~SlG~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~ 369 (757)
|+|||... .......+..++..+.++|++||+||||+| .....++..+++|+|||...
T Consensus 123 ~~s~g~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~-------------------- 182 (306)
T 4h6w_A 123 NVSAGQLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDD-------------------- 182 (306)
T ss_dssp EECCCEEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECT--------------------
T ss_pred eccccccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecC--------------------
Confidence 99999754 233445677788899999999999999999 66667777888999987421
Q ss_pred ecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCcc
Q 047470 370 YFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYY 449 (757)
Q Consensus 370 l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~ 449 (757)
T Consensus 183 -------------------------------------------------------------------------------- 182 (306)
T 4h6w_A 183 -------------------------------------------------------------------------------- 182 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCC
Q 047470 450 IPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIP 529 (757)
Q Consensus 450 ~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~ 529 (757)
.+.+++||++|+.. .||||+|||++|+++++.+
T Consensus 183 ----------------------------------------~~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~~-- 215 (306)
T 4h6w_A 183 ----------------------------------------QGKPVDFSNWGDAY-----QKQGILAPGKDILGAKPNG-- 215 (306)
T ss_dssp ----------------------------------------TSCBCSSSCBCHHH-----HHHEEEEECSSEEEECTTS--
T ss_pred ----------------------------------------CCCccccccccCCc-----CcceeecCCcCcccccCCC--
Confidence 22567899999753 5889999999999998876
Q ss_pred ccccCCCccccceEeeccccchhhhHhHHHHHHHHh----CCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 047470 530 FIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAI----HRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAG 605 (757)
Q Consensus 530 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G 605 (757)
.|..++|||||||||||++|||+++ +|.++|+|||++|++||+++...+. .....||+|
T Consensus 216 -----------~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~------~~~~~~G~G 278 (306)
T 4h6w_A 216 -----------GTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDT------DDQSRCLMG 278 (306)
T ss_dssp -----------CEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTC------SCGGGGTTC
T ss_pred -----------ceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCC------CCCCCccee
Confidence 8999999999999999999999865 6999999999999999998865332 244579999
Q ss_pred ccCccccCC
Q 047470 606 HIDPNKAMD 614 (757)
Q Consensus 606 ~vd~~~Al~ 614 (757)
+||+.+|++
T Consensus 279 ~ln~~~Av~ 287 (306)
T 4h6w_A 279 KLNILDAIE 287 (306)
T ss_dssp BCCHHHHHH
T ss_pred ecCHHHHHH
Confidence 999999998
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-49 Score=426.16 Aligned_cols=269 Identities=19% Similarity=0.183 Sum_probs=213.9
Q ss_pred CCCCCCCCCCC--ccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCC
Q 047470 131 SGLWPSARYGQ--GVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVS 208 (757)
Q Consensus 131 ~~~~~~~~~G~--Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~ 208 (757)
..+|+. .+|+ ||+||||||||| +||+|.++ +...++|.++-
T Consensus 33 ~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~~---------------------------~~~~~~~~~~~-------- 75 (347)
T 2iy9_A 33 TETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSDS---------------------------EFAKFSFTQDG-------- 75 (347)
T ss_dssp CHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTTC---------------------------EEEEEECBTTC--------
T ss_pred HHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhcC---------------------------cccCCcccCCC--------
Confidence 458887 8999 999999999999 99999742 33444554320
Q ss_pred CcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhC--
Q 047470 209 KEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIAD-- 286 (757)
Q Consensus 209 ~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~-- 286 (757)
.+.+.....|..||||||||||+|+ .| +.||||+|+|+.+|+++ ..+.. ++++||+||+++
T Consensus 76 ~~~~~~~~~d~~gHGT~vAgiia~~-------~g-----~~GvAp~a~l~~~~v~~---~~~~~--~~~~ai~~a~~~~~ 138 (347)
T 2iy9_A 76 SPFPVKKSEALYIHGTAMASLIASR-------YG-----IYGVYPHALISSRRVIP---DGVQD--SWIRAIESIMSNVF 138 (347)
T ss_dssp CSSCCSSSHHHHHHHHHHHHHHHCS-------SS-----SCCSSTTCEEEEEECCS---SBCTT--HHHHHHHHHHTCTT
T ss_pred CCCCCCCCCCCCCcHHHHHHHHhcc-------cC-----CcccCCCCEEEEEEEec---CCCHH--HHHHHHHHHHhhhh
Confidence 0111123567889999999999987 12 37999999999999998 43332 999999999999
Q ss_pred ----CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-C-------CCCcccCCC----------ceEEe
Q 047470 287 ----GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-F-------PRSIHNGAP----------WITTV 344 (757)
Q Consensus 287 ----g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~-------~~~~~~~ap----------~~itV 344 (757)
+++|||||||........+.+..++..+.++|++||+||||+| . ...+++..+ ++|+|
T Consensus 139 ~~~~~~~Vin~S~G~~~~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~V 218 (347)
T 2iy9_A 139 LAPGEEKIINISGGQKGVASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRV 218 (347)
T ss_dssp SCTTEEEEEEESSCBCCC-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEE
T ss_pred cccCCceEEEeccccCCCCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEE
Confidence 9999999999865334556778888899999999999999999 4 234556667 88888
Q ss_pred ccccc--cccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHH
Q 047470 345 GAGTL--DRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQ 422 (757)
Q Consensus 345 gas~~--~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k 422 (757)
||... +...
T Consensus 219 ga~~~~~~g~~--------------------------------------------------------------------- 229 (347)
T 2iy9_A 219 AALAQYRKGET--------------------------------------------------------------------- 229 (347)
T ss_dssp EEECCCCTTSC---------------------------------------------------------------------
T ss_pred EEcccCCCCce---------------------------------------------------------------------
Confidence 87533 1000
Q ss_pred HHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCC
Q 047470 423 MEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPD 502 (757)
Q Consensus 423 ~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~ 502 (757)
......++.||++||+
T Consensus 230 ----------------------------------------------------------------~~~~~~~~~fS~~G~~ 245 (347)
T 2iy9_A 230 ----------------------------------------------------------------PVLHGGGITGSRFGNN 245 (347)
T ss_dssp ----------------------------------------------------------------CCBCCCSSSCBCBCTT
T ss_pred ----------------------------------------------------------------ecccCCCCCCCCCCCC
Confidence 0001245699999995
Q ss_pred CCCCCCCCceEEeCCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcc
Q 047470 503 PISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTA 582 (757)
Q Consensus 503 ~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA 582 (757)
||||+|||++|+++++.+ .|..++|||||||||||++|||+|++|+|++.+||++|++||
T Consensus 246 -------~~di~APG~~i~s~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA 305 (347)
T 2iy9_A 246 -------WVDIAAPGQNITFLRPDA-------------KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESA 305 (347)
T ss_dssp -------TCSEEEECSSEEEECTTS-------------CEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHS
T ss_pred -------CCEEEeCCCCeEeecCCC-------------CeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 569999999999999865 899999999999999999999999999999999999999999
Q ss_pred cccCCCCCccccCCCCCCCCCCCccCccccCCC
Q 047470 583 YPVNFAENEIGVVPATPLDFGAGHIDPNKAMDP 615 (757)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~ 615 (757)
+++... ....||+|+||+.+|++.
T Consensus 306 ~~~~~~---------~~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 306 DKYPSL---------VDKVTEGRVLNAEKAISM 329 (347)
T ss_dssp EECGGG---------TTTSGGGEECCHHHHHHH
T ss_pred ccCCCC---------CCccccCCEecHHHHHHH
Confidence 988542 236999999999999984
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=417.97 Aligned_cols=300 Identities=25% Similarity=0.356 Sum_probs=218.0
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|+.+++|+||+||||||||+ +||+|.++-.. .|+-......................+.+.+... ..+
T Consensus 22 ~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~----~~~ 92 (340)
T 3lpc_A 22 DKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWACG----GRP 92 (340)
T ss_dssp HHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTS----CTT
T ss_pred HHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCcccccccccccccc----CCC
Confidence 45899999999999999999998 99999853111 1100000000000000000000000000000000 011
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh-----
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA----- 285 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~----- 285 (757)
.+.....|..||||||||||+|...++. .+.||||+|+|+.+|+++ ..++..++++++|+||++
T Consensus 93 ~~~~~~~d~~gHGT~vAgiia~~~~~~~--------g~~GvAp~a~l~~~~v~~---~~~~~~~~~~~ai~~a~~~~~~~ 161 (340)
T 3lpc_A 93 DPRKERSDSSWHGSHVAGTIAAVTNNRI--------GVAGVAYGAKVVPVRALG---RCGGYDSDISDGLYWAAGGRIAG 161 (340)
T ss_dssp CGGGSCBCCCCHHHHHHHHHHCCCSSSS--------SCCCTTTTSEEEEEECCB---TTBCCHHHHHHHHHHHHTCCCTT
T ss_pred CcccCCCCCCCCHHHHHHHHHccCCCCC--------cceeecCCCEEEEEEEec---CCCCcHHHHHHHHHHHhcccccc
Confidence 2223457889999999999999754322 247999999999999998 667889999999999998
Q ss_pred -----CCCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEE
Q 047470 286 -----DGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVT 358 (757)
Q Consensus 286 -----~g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~ 358 (757)
.+++|||||||... .....+..++.++.++|++||+||||+| .. ...+...+++|+|||++.
T Consensus 162 ~~~~~~~~~Vin~S~G~~~--~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~--------- 230 (340)
T 3lpc_A 162 IPENRNPAKVINMSLGSDG--QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTS--------- 230 (340)
T ss_dssp SCCCSSCCSEEEECCCEES--CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECT---------
T ss_pred cccccCCCeEEEeCcCCCC--CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCC---------
Confidence 89999999999864 2234566677788999999999999999 43 345677789999987421
Q ss_pred eCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEec
Q 047470 359 LDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLT 438 (757)
Q Consensus 359 ~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~ 438 (757)
T Consensus 231 -------------------------------------------------------------------------------- 230 (340)
T 3lpc_A 231 -------------------------------------------------------------------------------- 230 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCC
Q 047470 439 DTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGV 518 (757)
Q Consensus 439 ~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~ 518 (757)
.+.++.||++||. |||+|||+
T Consensus 231 ---------------------------------------------------~~~~~~~S~~g~~--------~di~ApG~ 251 (340)
T 3lpc_A 231 ---------------------------------------------------RGIRASFSNYGVD--------VDLAAPGQ 251 (340)
T ss_dssp ---------------------------------------------------TSSBCTTCCBSTT--------CCEEEECS
T ss_pred ---------------------------------------------------CCCcCCCCCCCCC--------ceEEecCC
Confidence 2357899999985 49999999
Q ss_pred CeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHh-C---CCCCHHHHHHHHHhcccccCCCCCcccc
Q 047470 519 DVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAI-H---RDWSPAAIRSAIMTTAYPVNFAENEIGV 594 (757)
Q Consensus 519 ~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~-~---p~~s~~~ik~~L~~TA~~~~~~~~~~~~ 594 (757)
+|+++++.+... .....|..++|||||||+|||++|||+|+ + |.+++++||++|++||+++..
T Consensus 252 ~i~s~~~~~~~~------~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~------- 318 (340)
T 3lpc_A 252 DILSTVDSGTRR------PVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG------- 318 (340)
T ss_dssp SEEEEEESCSSS------CCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSS-------
T ss_pred CeecccCCCCcC------CCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCC-------
Confidence 999998765321 11236999999999999999999999998 6 999999999999999998742
Q ss_pred CCCCCCCCCCCccCccccCCC
Q 047470 595 VPATPLDFGAGHIDPNKAMDP 615 (757)
Q Consensus 595 ~~~~~~~~G~G~vd~~~Al~~ 615 (757)
..+..||||+||+.+|++.
T Consensus 319 --~~~~~~G~G~vd~~~Av~~ 337 (340)
T 3lpc_A 319 --RLDRALGSGIVDAEAAVNS 337 (340)
T ss_dssp --CCSSCCCSSBCCHHHHHHH
T ss_pred --CCCCCcccceecHHHHHHH
Confidence 2566999999999999874
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=428.23 Aligned_cols=289 Identities=29% Similarity=0.380 Sum_probs=221.4
Q ss_pred CCCC-CCCCCCccEEEEEecCCcc------CCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhcc
Q 047470 132 GLWP-SARYGQGVIIGIIDTGIWP------ESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAG 204 (757)
Q Consensus 132 ~~~~-~~~~G~Gv~VgVIDtGid~------~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~ 204 (757)
.+|+ .+++|+||+|||||||||+ .||+|.+ ++...++|.+.
T Consensus 12 ~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~---------------------------~i~~~~~~~~~----- 59 (434)
T 1wmd_A 12 VAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRG---------------------------KITALYALGRT----- 59 (434)
T ss_dssp HHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTT---------------------------CEEEEEETTTT-----
T ss_pred hhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCC---------------------------CEeeeccccCC-----
Confidence 3887 6899999999999999999 7999874 23444444321
Q ss_pred CCCCCcCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCC---CHHHHHHHHH
Q 047470 205 INVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEES---AASDVLAGMD 281 (757)
Q Consensus 205 ~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~---~~~~i~~ai~ 281 (757)
..+.|..||||||||||+|+.. .+.||||+|+|+.+|+++ ..+. ..+++.++|+
T Consensus 60 ---------~~~~d~~gHGT~VAgiiag~g~-----------~~~GvAp~a~l~~~~v~~---~~g~~~~~~~~~~~ai~ 116 (434)
T 1wmd_A 60 ---------NNANDTNGHGTHVAGSVLGNGS-----------TNKGMAPQANLVFQSIMD---SGGGLGGLPSNLQTLFS 116 (434)
T ss_dssp ---------TCCCCSSSHHHHHHHHHHCCSS-----------SSCCSSTTSEEEEEECCC---TTSSCTTSCSSHHHHHH
T ss_pred ---------CCCCCCCCcHHHHHHHHHcCCC-----------CceeeCCCCEEEEEEeec---CCCccccccHHHHHHHH
Confidence 2366789999999999998631 146999999999999998 5442 4578999999
Q ss_pred HHHhCCCcEEEeCCCCCCCCCccCHHHHHHHHH-HhCCcEEEEecCCCC-CC--CCcccCCCceEEeccccccccceeeE
Q 047470 282 QAIADGVDIMSLSLGFDQTPYFNDVIAIASLSA-IENGIVVVCAAGNDG-FP--RSIHNGAPWITTVGAGTLDRSFHATV 357 (757)
Q Consensus 282 ~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~g-~~--~~~~~~ap~~itVgas~~~~~~~~~~ 357 (757)
+|+++|++|||||||...... .+....++..+ .++|++||+||||+| .. ...++.++++|+|||++..+...
T Consensus 117 ~a~~~g~~Vin~S~G~~~~~~-~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~--- 192 (434)
T 1wmd_A 117 QAYSAGARIHTNSWGAAVNGA-YTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF--- 192 (434)
T ss_dssp HHHHTTCSEEEECCCBCCTTC-CCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG---
T ss_pred HHHhcCCeEEEecCCCCcCCc-CCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc---
Confidence 999999999999999875211 13344444454 589999999999999 54 34566788999999964422100
Q ss_pred EeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEe
Q 047470 358 TLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFL 437 (757)
Q Consensus 358 ~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~ 437 (757)
|.
T Consensus 193 ------------------------------------------------------------------------~~------ 194 (434)
T 1wmd_A 193 ------------------------------------------------------------------------GS------ 194 (434)
T ss_dssp ------------------------------------------------------------------------CG------
T ss_pred ------------------------------------------------------------------------Cc------
Confidence 00
Q ss_pred ccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCC
Q 047470 438 TDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPG 517 (757)
Q Consensus 438 ~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG 517 (757)
.....+.+++|||+||+. ++++||||+|||
T Consensus 195 ------------------------------------------------~~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG 224 (434)
T 1wmd_A 195 ------------------------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPG 224 (434)
T ss_dssp ------------------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEEC
T ss_pred ------------------------------------------------ccCCCCccccccCCCCCC--CCCCCceEEcCC
Confidence 001234789999999998 799999999999
Q ss_pred CCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCC-----CHHHHHHHHHhcccccCCCCCcc
Q 047470 518 VDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDW-----SPAAIRSAIMTTAYPVNFAENEI 592 (757)
Q Consensus 518 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~-----s~~~ik~~L~~TA~~~~~~~~~~ 592 (757)
++|+++++........ .......|..++|||||||||||++|||+|++|++ ++++||++|++||+++.
T Consensus 225 ~~i~s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~------ 297 (434)
T 1wmd_A 225 TFILSARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG------ 297 (434)
T ss_dssp SSEEEECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS------
T ss_pred CCeEecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccC------
Confidence 9999998653211000 01113489999999999999999999999999865 89999999999999863
Q ss_pred ccCCCCCCCCCCCccCccccCCCC
Q 047470 593 GVVPATPLDFGAGHIDPNKAMDPG 616 (757)
Q Consensus 593 ~~~~~~~~~~G~G~vd~~~Al~~~ 616 (757)
...++..||||++|+.+|++..
T Consensus 298 --~~~~~~~~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 298 --LGYPNGNQGWGRVTLDKSLNVA 319 (434)
T ss_dssp --SCSSCTTTTTCBCCHHHHHTCE
T ss_pred --CCCCCccCCcCeEeHHHhcccc
Confidence 2346789999999999999754
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-46 Score=391.54 Aligned_cols=234 Identities=30% Similarity=0.415 Sum_probs=198.7
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++
T Consensus 19 ~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~~----------- 60 (284)
T 1sh7_A 19 DRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR---------------------------SVSGYDFVDN----------- 60 (284)
T ss_dssp CSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC---------------------------EEEEEETTTT-----------
T ss_pred hhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC---------------------------ccccccccCC-----------
Confidence 35899999999999999999999999999742 3334455431
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC--C
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD--G 287 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~--g 287 (757)
...+.|..||||||||||+|+. .||||+|+|+.+|+++ ..+ ++.+++++||+|++++ +
T Consensus 61 --~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~---~~g~~~~~~~~~ai~~a~~~~~~ 121 (284)
T 1sh7_A 61 --DADSSDCNGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLS---CSGSGTTSGVISGVDWVAQNASG 121 (284)
T ss_dssp --BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBC---TTSCBCHHHHHHHHHHHHHHCCS
T ss_pred --CCCCCCCCCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeC---CCCCcCHHHHHHHHHHHHhCCCC
Confidence 0235678999999999999862 5999999999999998 555 7888999999999984 7
Q ss_pred CcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 288 VDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 288 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
++|||||||... ...+..++.++.++|++||+||||+| .. ...++..|++|+||++..
T Consensus 122 ~~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 181 (284)
T 1sh7_A 122 PSVANMSLGGGQ----STALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTS---------------- 181 (284)
T ss_dssp SEEEEECCCBSC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECT----------------
T ss_pred CcEEEeCCCCCC----CHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecC----------------
Confidence 999999999863 35677777788999999999999999 43 355677889999997421
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
T Consensus 182 -------------------------------------------------------------------------------- 181 (284)
T 1sh7_A 182 -------------------------------------------------------------------------------- 181 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
.+.++.||++||.+ ||+|||++|+++++
T Consensus 182 --------------------------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~ 209 (284)
T 1sh7_A 182 --------------------------------------------SDSRSSFSNWGSCV--------DLFAPGSQIKSAWY 209 (284)
T ss_dssp --------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECT
T ss_pred --------------------------------------------CCCcCcccCCCCcc--------EEEeccCCeEEecC
Confidence 23578999999976 99999999999987
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVN 586 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~ 586 (757)
.+ .|..++|||||||||||++|||+|++|+++++|||++|++||++..
T Consensus 210 ~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 257 (284)
T 1sh7_A 210 DG-------------GYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENK 257 (284)
T ss_dssp TS-------------SEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred CC-------------CEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC
Confidence 65 7999999999999999999999999999999999999999999874
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-47 Score=395.53 Aligned_cols=239 Identities=31% Similarity=0.391 Sum_probs=200.3
Q ss_pred CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCC
Q 047470 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212 (757)
Q Consensus 133 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~ 212 (757)
.|. ..+|+||+|+|||||||++||+|.++ +...++|.+
T Consensus 24 ~~~-~~~G~gv~VaViDsGvd~~H~~l~~~---------------------------~~~~~~~~~-------------- 61 (279)
T 2pwa_A 24 YYD-ESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYYY-------------- 61 (279)
T ss_dssp ECC-TTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESSS--------------
T ss_pred ccc-CCCCCCCEEEEEeCCCCCCChhHhCc---------------------------cccccCCCC--------------
Confidence 344 37899999999999999999999742 233344431
Q ss_pred CCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCC---
Q 047470 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGV--- 288 (757)
Q Consensus 213 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~--- 288 (757)
.+.|..||||||||||+|+. .||||+|+|+.+|+++ ..+ ++.+++++||+|++++++
T Consensus 62 --~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~---~~g~~~~~~~~~ai~~a~~~~~~~~ 122 (279)
T 2pwa_A 62 --SSRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLD---DNGSGQYSTIIAGMDFVASDKNNRN 122 (279)
T ss_dssp --CSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSC---TTSCCCHHHHHHHHHHHHHHGGGSC
T ss_pred --CCCCCCCCHHHHHHHHHhcc--------------cccCCCCEEEEEEeEc---CCCCcCHHHHHHHHHHHHhcCcccc
Confidence 25678999999999999862 5999999999999998 655 788999999999999887
Q ss_pred ----cEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCC
Q 047470 289 ----DIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNG 362 (757)
Q Consensus 289 ----dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~ 362 (757)
+|||||||... .+.+..++.++.++|++||+||||+| .. ...++..|++|+|||...
T Consensus 123 ~~~~~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------- 185 (279)
T 2pwa_A 123 CPKGVVASLSLGGGY----SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR------------- 185 (279)
T ss_dssp CTTEEEEEECCCEEC----CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------
T ss_pred CCCccEEEecCCCCC----CHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecC-------------
Confidence 99999999753 45677777788999999999999999 43 345677889999997421
Q ss_pred cEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 363 LTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 363 ~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T 2pwa_A 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEe
Q 047470 443 IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLA 522 (757)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 522 (757)
.+.++.||++||.+ ||+|||++|++
T Consensus 186 -----------------------------------------------~~~~~~~S~~G~~~--------di~APG~~i~s 210 (279)
T 2pwa_A 186 -----------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILS 210 (279)
T ss_dssp -----------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEE
T ss_pred -----------------------------------------------CCCcCCcCCCCCcc--------eEEEecCCeEE
Confidence 23678999999975 99999999999
Q ss_pred cccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCC
Q 047470 523 AVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDF 602 (757)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~ 602 (757)
+++.+ .|..++|||||||||||++|||+|+ |++++.+||++|++||++... ..+
T Consensus 211 ~~~~~-------------~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~------------~~~ 264 (279)
T 2pwa_A 211 TWIGG-------------STRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL------------SNI 264 (279)
T ss_dssp EETTT-------------EEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC------------BSC
T ss_pred eecCC-------------CEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc------------CCC
Confidence 99876 7999999999999999999999999 999999999999999998732 257
Q ss_pred CCCccCcc
Q 047470 603 GAGHIDPN 610 (757)
Q Consensus 603 G~G~vd~~ 610 (757)
|+|.+|+.
T Consensus 265 ~~g~~n~l 272 (279)
T 2pwa_A 265 PFGTVNLL 272 (279)
T ss_dssp CTTSCCEE
T ss_pred CCCCccEe
Confidence 78888863
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-46 Score=388.37 Aligned_cols=236 Identities=32% Similarity=0.381 Sum_probs=197.2
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++|+||+|+|||||||++||+|.++ +...++|.++
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~---------------------------~~~~~d~~~~----------- 62 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR---------------------------ASSGYDFIDN----------- 62 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTTT-----------
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc---------------------------cccCeecCCC-----------
Confidence 35799999999999999999999999999742 2334445331
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHh--CC
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIA--DG 287 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~--~g 287 (757)
...+.|..||||||||||+|+. .||||+|+|+.+|+++ +.+ +..+++++||+|+++ .+
T Consensus 63 --~~~~~d~~gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~---~~g~~~~~~~~~ai~~a~~~~~g 123 (278)
T 2b6n_A 63 --DYDATDCNGHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLN---CSGSGSNSGVIAGINWVKNNASG 123 (278)
T ss_dssp --BSCCCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSC---TTSCCCHHHHHHHHHHHHHHCCS
T ss_pred --CCCCCCCCCcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEEC---CCCCccHHHHHHHHHHHHhCCCC
Confidence 0235688999999999999862 5999999999999998 655 788999999999998 59
Q ss_pred CcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 288 VDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 288 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
++|||||||... .+.+..++.++.++|++||+||||+| .. ...+...|++|+||+...
T Consensus 124 ~~Vin~S~G~~~----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 183 (278)
T 2b6n_A 124 PAVANMSLGGGA----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTS---------------- 183 (278)
T ss_dssp SEEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------
T ss_pred CeEEEECCCCCc----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCC----------------
Confidence 999999999864 35666777788999999999999999 43 334667789999987421
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
T Consensus 184 -------------------------------------------------------------------------------- 183 (278)
T 2b6n_A 184 -------------------------------------------------------------------------------- 183 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
.+.++.||++||.. ||+|||++|+++++
T Consensus 184 --------------------------------------------~~~~~~~S~~G~~~--------di~ApG~~i~s~~~ 211 (278)
T 2b6n_A 184 --------------------------------------------NDSRSSFSNYGTCL--------DIYAPGSSITSSWY 211 (278)
T ss_dssp --------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECT
T ss_pred --------------------------------------------CCCcCCcCCCCCCC--------eEEeCCCCeECccc
Confidence 23578999999965 99999999999986
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVN 586 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~ 586 (757)
... ..|..++|||||||||||++|||+|++|++++.|||++|++||++..
T Consensus 212 ~~~-----------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~ 261 (278)
T 2b6n_A 212 TSN-----------SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADK 261 (278)
T ss_dssp TST-----------TCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESC
T ss_pred CCC-----------CCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCC
Confidence 532 17899999999999999999999999999999999999999998764
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-46 Score=390.77 Aligned_cols=235 Identities=31% Similarity=0.379 Sum_probs=198.7
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+.+|+||+|+|||||||++||+|.++ +...++|..
T Consensus 21 ~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~------------ 61 (276)
T 4dzt_A 21 SNSYTYTATGRGVNVYVIDTGIRTTHREFGGR---------------------------ARVGYDALG------------ 61 (276)
T ss_dssp CSCEECSCCCTTCEEEEEESCCCTTCGGGTTC---------------------------EEEEEETTS------------
T ss_pred ccceecCCCCCCcEEEEEccCCCCCChhHccC---------------------------eeccccCCC------------
Confidence 45899999999999999999999999999742 233333322
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC--C
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD--G 287 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~--g 287 (757)
....|..||||||||||+|.. .||||+|+|+.+|+++ +.+ ...++++++++|++++ +
T Consensus 62 ---~~~~d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~---~~~~~~~~~~~~ai~~~~~~~~~ 121 (276)
T 4dzt_A 62 ---GNGQDCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLD---CNGSGSTSGVIAGVDWVTRNHRR 121 (276)
T ss_dssp ---SCSCCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSC---TTSCCCHHHHHHHHHHHHHHCCS
T ss_pred ---CCCCCCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeC---CCCCcCHHHHHHHHHHHHhcCCC
Confidence 235678999999999999872 5999999999999998 555 7889999999999987 8
Q ss_pred CcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 288 VDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 288 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
++|||||||... ...+..++..+.++|+++|+||||+| .. ...++..+++|+|||...
T Consensus 122 ~~vin~S~g~~~----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~---------------- 181 (276)
T 4dzt_A 122 PAVANMSLGGGV----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTS---------------- 181 (276)
T ss_dssp SEEEEECCCEEC----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------
T ss_pred CeEEEECCCCCC----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECC----------------
Confidence 999999999754 45677777789999999999999999 43 334677788999987421
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
T Consensus 182 -------------------------------------------------------------------------------- 181 (276)
T 4dzt_A 182 -------------------------------------------------------------------------------- 181 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
.+.++.||++||.. ||+|||++|+++++
T Consensus 182 --------------------------------------------~~~~~~~S~~g~~~--------dv~ApG~~i~s~~~ 209 (276)
T 4dzt_A 182 --------------------------------------------SDARASFSNYGSCV--------DLFAPGASIPSAWY 209 (276)
T ss_dssp --------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEECT
T ss_pred --------------------------------------------CCCcCCcCCCCCCc--------eEEeCCCCeEcccc
Confidence 23678999999987 99999999999987
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNF 587 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~ 587 (757)
.... .|..++|||||||+|||++|||+|++|++++++||++|++||++...
T Consensus 210 ~~~~-----------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 260 (276)
T 4dzt_A 210 TSDT-----------ATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRL 260 (276)
T ss_dssp TSSS-----------CEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred CCCC-----------ceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCcc
Confidence 6532 78999999999999999999999999999999999999999998754
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=413.98 Aligned_cols=288 Identities=17% Similarity=0.193 Sum_probs=210.5
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++|+||+|||||||||++||+|.++-. ....++|.++. ..+
T Consensus 28 ~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~-------~~p 75 (471)
T 1p8j_A 28 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD-------------------------PGASFDVNDQD-------PDP 75 (471)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC-------------------------GGGCEETTTTB-------SCC
T ss_pred HHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC-------------------------ccCcccccCCC-------CCC
Confidence 4589999999999999999999999999985310 00123333210 011
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh-CCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-DGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~-~g~d 289 (757)
.+...+.|..||||||||||+|...++. .+.||||+|+|+.+|+++ +..+++++|++++++ ++++
T Consensus 76 ~~~~~~~d~~gHGT~vAGiiaa~~~n~~--------g~~GvAp~a~i~~~rv~~------g~~~~~~~ai~~a~~~~~~~ 141 (471)
T 1p8j_A 76 QPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLD------GEVTDAVEARSLGLNPNHIH 141 (471)
T ss_dssp CCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSS------SCCCHHHHHHHHTSCTTTCC
T ss_pred CCccCCCCCCCcHHHHHHHHHeeccCCC--------CCEEECCCCeEEEEEccC------CchhHHHHHHHhhhccCCCe
Confidence 1222456889999999999999753322 247999999999999987 346789999999999 9999
Q ss_pred EEEeCCCCCCCC----CccCHHHHHHHHHH-----hCCcEEEEecCCCC-CCCC----cccCCCceEEecccccccccee
Q 047470 290 IMSLSLGFDQTP----YFNDVIAIASLSAI-----ENGIVVVCAAGNDG-FPRS----IHNGAPWITTVGAGTLDRSFHA 355 (757)
Q Consensus 290 VIn~SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g-~~~~----~~~~ap~~itVgas~~~~~~~~ 355 (757)
|||||||..... .....+..++..+. .+|++||+||||+| .... ....++++|+|||.+.
T Consensus 142 Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~------ 215 (471)
T 1p8j_A 142 IYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ------ 215 (471)
T ss_dssp EEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT------
T ss_pred EEEeccCcCCCCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccC------
Confidence 999999986411 11223344444444 37999999999999 4221 1234578888887421
Q ss_pred eEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEE
Q 047470 356 TVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAI 435 (757)
Q Consensus 356 ~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~ 435 (757)
T Consensus 216 -------------------------------------------------------------------------------- 215 (471)
T 1p8j_A 216 -------------------------------------------------------------------------------- 215 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEe
Q 047470 436 FLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVA 515 (757)
Q Consensus 436 i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A 515 (757)
.+.++.||++||... ...+|+..+
T Consensus 216 ------------------------------------------------------~g~~a~~S~~g~~~~--~~~~~~~~~ 239 (471)
T 1p8j_A 216 ------------------------------------------------------FGNVPWYSEACSSTL--ATTYSSGNQ 239 (471)
T ss_dssp ------------------------------------------------------TSCCCTTCCBCTTCC--EEEECCCST
T ss_pred ------------------------------------------------------CCCcccccCCCCcce--EEeCCCCCC
Confidence 235789999999872 333444445
Q ss_pred CCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccc--
Q 047470 516 PGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIG-- 593 (757)
Q Consensus 516 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~-- 593 (757)
||..|+++...+ ..|..++|||||||||||++|||+|++|+|++++||++|++||+++......+.
T Consensus 240 ~g~~i~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n 307 (471)
T 1p8j_A 240 NEKQIVTTDLRQ------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATN 307 (471)
T ss_dssp TSCCEEEEETTT------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEEC
T ss_pred CCCCEEEeeCCC------------CccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceec
Confidence 567899987643 268999999999999999999999999999999999999999998864322111
Q ss_pred -cCCCCCCCCCCCccCccccCCCCce
Q 047470 594 -VVPATPLDFGAGHIDPNKAMDPGLI 618 (757)
Q Consensus 594 -~~~~~~~~~G~G~vd~~~Al~~~lv 618 (757)
.....+..||||+||+.+|++....
T Consensus 308 ~~g~~~~~~~G~G~vda~~Av~~a~~ 333 (471)
T 1p8j_A 308 GVGRKVSHSYGYGLLDAGAMVALAQN 333 (471)
T ss_dssp TTSCEEBTTTBTCBCCHHHHHHHHHT
T ss_pred CCCcccCCCCCCEEEcHhHHHHHhhc
Confidence 0112456999999999999985443
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=402.40 Aligned_cols=273 Identities=23% Similarity=0.218 Sum_probs=199.1
Q ss_pred CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCC
Q 047470 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212 (757)
Q Consensus 133 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~ 212 (757)
.|..+++|+||+|+|||||||++||+|.++- ....+.+... .++ ...
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr~--------------------------~~~~~~~v~~---~dg----~~f 64 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGRV--------------------------MVTDFENVPE---EDG----TRF 64 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTTE--------------------------EEEEEECCCC---CC--------
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHcccc--------------------------cccCcccccC---CCC----ccc
Confidence 7888999999999999999999999998531 1111111100 000 000
Q ss_pred CCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC-----
Q 047470 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD----- 286 (757)
Q Consensus 213 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~----- 286 (757)
.....|..||||||||||+|+. .||||+|+|+.+|+++ ..| ++.+++++||+|++++
T Consensus 65 ~~~~~D~~GHGThVAGIIag~~--------------~GVAP~A~L~~vkVl~---~~G~g~~s~ii~ai~~a~~~~~~~~ 127 (546)
T 2qtw_B 65 HRQASKCDSHGTHLAGVVSGRD--------------AGVAKGASMRSLRVLN---CQGKGTVSGTLIGLEFIRKSQLVQP 127 (546)
T ss_dssp ---CTTTTHHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSC---TTSEEEHHHHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCChHHHHHHHHhccC--------------CCcCCCCEEEEEEEEC---CCCCcCHHHHHHHHHHHHHhhhhcc
Confidence 0235678999999999999873 5999999999999998 666 7788999999999974
Q ss_pred -CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCCc
Q 047470 287 -GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNGL 363 (757)
Q Consensus 287 -g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~ 363 (757)
+++|||||||+.. ...+..++.++.++|++||+||||+| +. ...++..|++|+|||++.+...
T Consensus 128 ~g~~VINmSlGg~~----s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g~~---------- 193 (546)
T 2qtw_B 128 VGPLVVLLPLAGGY----SRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP---------- 193 (546)
T ss_dssp CSCEEEEECEEEEC----CHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTSCB----------
T ss_pred CCCeEEEecCCCCC----cHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCCCc----------
Confidence 8999999999753 45677777789999999999999999 43 3446778999999985332100
Q ss_pred EEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCC
Q 047470 364 TFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDI 443 (757)
Q Consensus 364 ~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~ 443 (757)
T Consensus 194 -------------------------------------------------------------------------------- 193 (546)
T 2qtw_B 194 -------------------------------------------------------------------------------- 193 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEec
Q 047470 444 DSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAA 523 (757)
Q Consensus 444 ~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa 523 (757)
...-..||++||.+ ||+|||++|+++
T Consensus 194 ----------------------------------------------a~~s~~fSn~G~~v--------DI~APG~~I~St 219 (546)
T 2qtw_B 194 ----------------------------------------------VTLGTLGTNFGRCV--------DLFAPGEDIIGA 219 (546)
T ss_dssp ----------------------------------------------CEETTEECCBSTTC--------CEEEECSSEEEE
T ss_pred ----------------------------------------------ccccCCcCCCCCcc--------eEEecCccEEee
Confidence 00002389999854 999999999999
Q ss_pred ccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCC----------Cccc
Q 047470 524 VAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAE----------NEIG 593 (757)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~----------~~~~ 593 (757)
++.... .|..++|||||||||||++|||+|++|+|+++|||++|++||.+..... .|-.
T Consensus 220 ~~~~~~-----------~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~~i~~~~~p~~~~~~tpN~ 288 (546)
T 2qtw_B 220 SSDCST-----------CFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKDVINEAWFPEDQRVLTPNL 288 (546)
T ss_dssp CTTSTT-----------CEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEESCSCGGGSCHHHHTTSCCE
T ss_pred ccCCCC-----------cEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhccccccCCccCccccCCCCccc
Confidence 876422 7999999999999999999999999999999999999999997654221 1111
Q ss_pred --cCCCCCCCCCCCc--cCccccCC
Q 047470 594 --VVPATPLDFGAGH--IDPNKAMD 614 (757)
Q Consensus 594 --~~~~~~~~~G~G~--vd~~~Al~ 614 (757)
..+.....+|+|+ .++..+..
T Consensus 289 l~~~~~~~~~~G~~l~~~~~w~a~s 313 (546)
T 2qtw_B 289 VAALPPSTHGAGWQLFCRTVWSAHS 313 (546)
T ss_dssp ECCCCCTTCC--CCCEEEEEECCCC
T ss_pred hhccCCcccccCCCcchhchhccCC
Confidence 2222456678888 77777665
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=408.49 Aligned_cols=280 Identities=21% Similarity=0.222 Sum_probs=210.7
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|..+++|+||+|||||||||++||+|.++-. ..+.++|.++.
T Consensus 44 ~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~-------------------------~~~~~d~~~~~---------- 88 (503)
T 2id4_A 44 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC-------------------------AEGSWDFNDNT---------- 88 (503)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC-------------------------GGGCEETTTTB----------
T ss_pred HHHHhcCCCCCCeEEEEEeCCCCCCChhHhhccc-------------------------ccCcccCCCCC----------
Confidence 3589999999999999999999999999985310 01223343210
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcE
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDI 290 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dV 290 (757)
....+..|..||||||||||||...++. .+.||||+|+|+.+|+++ .. ++..++++||+||++++ +|
T Consensus 89 ~~~~p~~d~~gHGT~vAGiiaa~~~n~~--------~~~GvAp~a~i~~~rv~~---~~-~~~~~~~~ai~~a~~~~-~I 155 (503)
T 2id4_A 89 NLPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILS---GD-ITTEDEAASLIYGLDVN-DI 155 (503)
T ss_dssp SCCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTT---SC-CCHHHHHHHTTTTTTTC-SE
T ss_pred CCCCCCCCCCChHHHHHHHHHhccCCCC--------CcEEECCCCEEEEEEeeC---CC-CChHHHHHHHHhHhhcC-CE
Confidence 1112235788999999999999753322 136999999999999997 32 67889999999999998 99
Q ss_pred EEeCCCCCCCC----CccCHHHHHHHHHH-----hCCcEEEEecCCCC-CCC--Ccc--cCCCceEEeccccccccceee
Q 047470 291 MSLSLGFDQTP----YFNDVIAIASLSAI-----ENGIVVVCAAGNDG-FPR--SIH--NGAPWITTVGAGTLDRSFHAT 356 (757)
Q Consensus 291 In~SlG~~~~~----~~~~~~~~a~~~a~-----~~Gi~vV~AAGN~g-~~~--~~~--~~ap~~itVgas~~~~~~~~~ 356 (757)
||||||..... .....+..++.++. .+|++||+||||+| ... .++ ..++++|+|||.+.
T Consensus 156 in~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~------- 228 (503)
T 2id4_A 156 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDH------- 228 (503)
T ss_dssp EEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECT-------
T ss_pred EEeCCCcCCCCccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCC-------
Confidence 99999986411 11234555555555 47999999999999 432 222 24567888887421
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEE
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIF 436 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i 436 (757)
T Consensus 229 -------------------------------------------------------------------------------- 228 (503)
T 2id4_A 229 -------------------------------------------------------------------------------- 228 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEe-
Q 047470 437 LTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVA- 515 (757)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~A- 515 (757)
.+.+++||++||.. |++|
T Consensus 229 -----------------------------------------------------~~~~a~~S~~g~~~--------~~~a~ 247 (503)
T 2id4_A 229 -----------------------------------------------------KDLHPPYSEGCSAV--------MAVTY 247 (503)
T ss_dssp -----------------------------------------------------TSCCCTTCCCCTTE--------EEEEE
T ss_pred -----------------------------------------------------CCCcCCcCCCCCcc--------eEeec
Confidence 23578999999987 8888
Q ss_pred ---CCCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCC-CCc
Q 047470 516 ---PGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFA-ENE 591 (757)
Q Consensus 516 ---PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~-~~~ 591 (757)
||..|+++...+ ..|..++|||||||||||++|||+|++|+|++++||.+|++||+++... ...
T Consensus 248 ~~gpG~~I~st~~~~------------~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~ 315 (503)
T 2id4_A 248 SSGSGEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGD 315 (503)
T ss_dssp CSBTTBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGC
T ss_pred CCCCCCceEeecCCC------------CceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCC
Confidence 899999985432 1799999999999999999999999999999999999999999988643 111
Q ss_pred cc---cCCCCCCCCCCCccCccccCCCCce
Q 047470 592 IG---VVPATPLDFGAGHIDPNKAMDPGLI 618 (757)
Q Consensus 592 ~~---~~~~~~~~~G~G~vd~~~Al~~~lv 618 (757)
+. .....+..||||+||+.+|++....
T Consensus 316 ~~~~~~g~~~~~~~G~G~vda~~Av~~a~~ 345 (503)
T 2id4_A 316 WRDSAMGKKYSHRYGFGKIDAHKLIEMSKT 345 (503)
T ss_dssp CEECSSSSEEBTTTBTCBCCHHHHHHHHTS
T ss_pred ceecCCCCccCcccCCcEecHHHHHHHHhc
Confidence 10 1122456899999999999985443
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-44 Score=378.77 Aligned_cols=228 Identities=31% Similarity=0.425 Sum_probs=192.5
Q ss_pred CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCC
Q 047470 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212 (757)
Q Consensus 133 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~ 212 (757)
+|... +|+||+|+|||||||++||+|.+. +...++|..
T Consensus 25 ~~~~~-~G~gv~VaViDtGvd~~h~~l~~~---------------------------~~~~~~~~~-------------- 62 (279)
T 3f7m_A 25 AYDTS-AGAGACVYVIDTGVEDTHPDFEGR---------------------------AKQIKSYAS-------------- 62 (279)
T ss_dssp EECTT-TTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEECSS--------------
T ss_pred eecCC-CCCCCEEEEEcCCCCCCChhhccc---------------------------cccccCCCC--------------
Confidence 56655 999999999999999999999742 333344432
Q ss_pred CCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCC----
Q 047470 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADG---- 287 (757)
Q Consensus 213 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g---- 287 (757)
...|..||||||||||+|+. .||||+|+|+.+|+++ ..+ +..+++++||+|+++++
T Consensus 63 --~~~d~~gHGT~vAgii~~~~--------------~GvAp~a~l~~~~v~~---~~~~~~~~~~~~ai~~~~~~~~~~~ 123 (279)
T 3f7m_A 63 --TARDGHGHGTHCAGTIGSKT--------------WGVAKKVSIFGVKVLD---DSGSGSLSNIIAGMDFVASDRQSRN 123 (279)
T ss_dssp --SSSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSC---TTSCCCHHHHHHHHHHHHHHGGGSC
T ss_pred --CCCCCCCcHHHHHHHHhcCc--------------cccCCCCEEEEEEeeC---CCCCcCHHHHHHHHHHHHhcccccc
Confidence 12378999999999999862 5999999999999998 555 78899999999999886
Q ss_pred ---CcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC-CCcccCCCceEEeccccccccceeeEEeCCC
Q 047470 288 ---VDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP-RSIHNGAPWITTVGAGTLDRSFHATVTLDNG 362 (757)
Q Consensus 288 ---~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~-~~~~~~ap~~itVgas~~~~~~~~~~~~~~~ 362 (757)
++|||||||.. ..+.+..++..+.++|++||+||||+| .. ...++..|++|+|||...
T Consensus 124 ~~~~~Vin~S~g~~----~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~------------- 186 (279)
T 3f7m_A 124 CPRRTVASMSLGGG----YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDS------------- 186 (279)
T ss_dssp CTTEEEEEECCCEE----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECT-------------
T ss_pred CCCCeEEEeCCCcC----ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCC-------------
Confidence 89999999975 345677777799999999999999999 43 334677789999997421
Q ss_pred cEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC
Q 047470 363 LTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD 442 (757)
Q Consensus 363 ~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~ 442 (757)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 3f7m_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEe
Q 047470 443 IDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLA 522 (757)
Q Consensus 443 ~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~s 522 (757)
.+.++.||++||.. ||+|||++|++
T Consensus 187 -----------------------------------------------~~~~~~~S~~g~~~--------di~ApG~~i~s 211 (279)
T 3f7m_A 187 -----------------------------------------------NDVRSTFSNYGRVV--------DIFAPGTSITS 211 (279)
T ss_dssp -----------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEE
T ss_pred -----------------------------------------------CCCCCCCCCCCCCC--------eEEECCCCeEe
Confidence 23678999999976 99999999999
Q ss_pred cccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCC
Q 047470 523 AVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNF 587 (757)
Q Consensus 523 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~ 587 (757)
+++.+ .|..++|||||||+|||++|||+|++|. ++++||++|++||++...
T Consensus 212 ~~~~~-------------~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~ 262 (279)
T 3f7m_A 212 TWIGG-------------RTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVL 262 (279)
T ss_dssp ECGGG-------------CEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCC
T ss_pred ecCCC-------------CEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhcccccc
Confidence 98765 7899999999999999999999999999 999999999999998643
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=400.69 Aligned_cols=314 Identities=21% Similarity=0.177 Sum_probs=198.5
Q ss_pred CCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcC
Q 047470 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEY 211 (757)
Q Consensus 132 ~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~ 211 (757)
.+|.++++|+||+|||||||||++||||.++- ..+.++|.++. .
T Consensus 61 ~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~--------------------------~~~~~~~~~~~----------~ 104 (600)
T 3hjr_A 61 WAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV--------------------------RPGSKNVVTGS----------D 104 (600)
T ss_dssp HHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB--------------------------CSCCBCTTTSS----------S
T ss_pred HHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc--------------------------ccCcceeecCC----------C
Confidence 58999999999999999999999999998531 11223332211 1
Q ss_pred CCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHH-HHHHhCCCc
Q 047470 212 DFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGM-DQAIADGVD 289 (757)
Q Consensus 212 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai-~~a~~~g~d 289 (757)
++.+..|.+||||||||||||.. + ..| +.||||+|+|+.+|+++ +.+ +..++++.|+ +++..++++
T Consensus 105 dp~p~~~~~gHGThVAGiIAa~~-n---~~g-----~~GVAp~A~l~~~rvl~---~~~~~~~~~~~~a~~~~~~~~~~~ 172 (600)
T 3hjr_A 105 DPTPTDPDTAHGTSVSGIIAAVD-N---AIG-----TKGIAPRAQLQGFNLLD---DNSQQLQKDWLYALGDSNASRDNR 172 (600)
T ss_dssp CCCCCSTTCCHHHHHHHHHHCCS-S---SSS-----CCCSSTTCEEEEECTTS---TTCCCCHHHHHHHTTSSHHHHTCS
T ss_pred CCCCCCCCCChHHHHHHHHhEeC-C---CCC-----cEEeCCCCEEEEEEeec---CCCCccHHHHHHHhhhhhhhcCCC
Confidence 11234467899999999999863 1 112 37999999999999998 555 6777877776 667888999
Q ss_pred EEEeCCCCCC-CCCccC-----HHHHHHHHH--HhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeC
Q 047470 290 IMSLSLGFDQ-TPYFND-----VIAIASLSA--IENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLD 360 (757)
Q Consensus 290 VIn~SlG~~~-~~~~~~-----~~~~a~~~a--~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~ 360 (757)
|||+|||... .....+ .+..++..+ ..+|+++|+||||.+ ...... +.+.+ .+
T Consensus 173 I~n~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~------------~g 234 (600)
T 3hjr_A 173 VFNQSYGMSVVDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNR------------TG 234 (600)
T ss_dssp EEEECCCCCCSSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEE------------ES
T ss_pred EEecccCccccCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------ccccc------------CC
Confidence 9999999764 222211 222222222 268999999999987 211000 00000 00
Q ss_pred CCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccC
Q 047470 361 NGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDT 440 (757)
Q Consensus 361 ~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~ 440 (757)
++. .+ ..+.|. +........++.+|+
T Consensus 235 ~~~---------------~~---------~~~~~~---------------------~d~~~~~~~~IsVgA--------- 260 (600)
T 3hjr_A 235 NGP---------------KL---------PFENSN---------------------LDPSNSNFWNLVVSA--------- 260 (600)
T ss_dssp SCC---------------CC---------CSSBTT---------------------SSGGGGSSSEEEEEE---------
T ss_pred CCC---------------CC---------Cccccc---------------------ccCccccCcceEEee---------
Confidence 000 00 000111 000000000000111
Q ss_pred CCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCe
Q 047470 441 PDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDV 520 (757)
Q Consensus 441 ~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I 520 (757)
....+.++.||++|+.. +++|||..+
T Consensus 261 ----------------------------------------------~~~~g~~a~yS~~G~~v--------~~~apg~~~ 286 (600)
T 3hjr_A 261 ----------------------------------------------LNADGVRSSYSSVGSNI--------FLSATGGEY 286 (600)
T ss_dssp ----------------------------------------------ECTTSSBCTTCCBCTTC--------CEEEECCSC
T ss_pred ----------------------------------------------ecCCCCEeecccCCcce--------eeccCCCCC
Confidence 12345789999999988 999999763
Q ss_pred --------EecccCCCCcc-------------ccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHH
Q 047470 521 --------LAAVAPNIPFI-------------EIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIM 579 (757)
Q Consensus 521 --------~sa~~~~~~~~-------------~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~ 579 (757)
.+..++..... ....+.....|..++|||||||||||++|||+|++|+|+++|||++|+
T Consensus 287 ~~~~~~~vt~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~ 366 (600)
T 3hjr_A 287 GTDTPAMVTTDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLA 366 (600)
T ss_dssp SSSSCCEEEECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred CCCCcceeeecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 22222211000 000112234688999999999999999999999999999999999999
Q ss_pred hcccccCCCCCccc-----------------------cCCCCCCCCCCCccCccccCCCCcee
Q 047470 580 TTAYPVNFAENEIG-----------------------VVPATPLDFGAGHIDPNKAMDPGLIY 619 (757)
Q Consensus 580 ~TA~~~~~~~~~~~-----------------------~~~~~~~~~G~G~vd~~~Al~~~lv~ 619 (757)
+||++++....|.. ........||||+||+.+|++.+..+
T Consensus 367 ~TA~~~d~~~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A~~w 429 (600)
T 3hjr_A 367 RSATRVDAKHQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELAANH 429 (600)
T ss_dssp HHCBCCSTTCCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHHTTC
T ss_pred hhCccCCCCCCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHhhcC
Confidence 99999876554321 11112457999999999999854433
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-25 Score=252.80 Aligned_cols=96 Identities=25% Similarity=0.359 Sum_probs=76.7
Q ss_pred eeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh---CCCcEEEeCCCCCCCCC---ccCHHHHHHHHHHhCCcEE
Q 047470 248 ARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA---DGVDIMSLSLGFDQTPY---FNDVIAIASLSAIENGIVV 321 (757)
Q Consensus 248 ~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~---~g~dVIn~SlG~~~~~~---~~~~~~~a~~~a~~~Gi~v 321 (757)
+.||||+|+|+.|++.+ ..++++++|+||++ ++++|||||||.....+ +.+.+..++..|..+||+|
T Consensus 274 ~~gvAp~a~i~~~~~~~-------~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gi~v 346 (552)
T 1t1e_A 274 AGALAPGAKIAVYFAPN-------TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTV 346 (552)
T ss_dssp HHHHCTTSEEEEEECCS-------SHHHHHHHHHHHHTCTTTCCSEEEECEEEEGGGSCHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhccCCCCeEEEEEcCC-------CCchHHHHHHHHHhcccCCCCEEEecccCCcccCCHHHHHHHHHHHHHHHhCCeEE
Confidence 47999999999999743 35789999999998 79999999999875211 2345666777888999999
Q ss_pred EEecCCCC-CC--------CCcccCCCceEEecccccc
Q 047470 322 VCAAGNDG-FP--------RSIHNGAPWITTVGAGTLD 350 (757)
Q Consensus 322 V~AAGN~g-~~--------~~~~~~ap~~itVgas~~~ 350 (757)
|+||||+| .. ..+++.+|++++||+++..
T Consensus 347 v~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 347 LAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp EEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred EEecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 99999999 43 2345678999999997543
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=212.18 Aligned_cols=99 Identities=16% Similarity=0.237 Sum_probs=79.5
Q ss_pred eeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh-CCCcEEEeCCCCCCC----CCccCHHHHHHHHHHhCCcEEEE
Q 047470 249 RGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-DGVDIMSLSLGFDQT----PYFNDVIAIASLSAIENGIVVVC 323 (757)
Q Consensus 249 ~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~-~g~dVIn~SlG~~~~----~~~~~~~~~a~~~a~~~Gi~vV~ 323 (757)
..+||+|+++.|++.+ ..++..++++++|+||++ ++++|||||||.... ..+.+.+..++..|..+||+||+
T Consensus 90 g~~aP~a~~~~~~~~~---~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~ 166 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMAD---QSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSV 166 (372)
T ss_dssp HHTTSCEEEEEEEEEC---TTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEE
T ss_pred hhcCCCCcEEEEEeCC---CCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3578999999999987 445677899999999998 899999999998641 12335677777788899999999
Q ss_pred ecCCCC-CCC-------------CcccCCCceEEecccccc
Q 047470 324 AAGNDG-FPR-------------SIHNGAPWITTVGAGTLD 350 (757)
Q Consensus 324 AAGN~g-~~~-------------~~~~~ap~~itVgas~~~ 350 (757)
||||+| ..+ .+++.+|++++||+++..
T Consensus 167 AsGd~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 167 SSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp ECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred EECCCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 999999 432 345678999999997654
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-10 Score=102.16 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=69.2
Q ss_pred CCCCCceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEec
Q 047470 32 RNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPE 111 (757)
Q Consensus 32 ~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~ 111 (757)
....+++|||.|++...++....+.+|+.+++++.. . +.++.|+|++.|+||+++|+++++++|+++|+|.+||+|
T Consensus 33 ~~~ip~~YIV~lk~~~~~~~~~~h~~~l~s~~~~~~-~---~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D 108 (114)
T 2w2n_P 33 PWRLPGTYVVVLKEETHLSQSERTARRLQAQAARRG-Y---LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEED 108 (114)
T ss_dssp GGEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT-C---CCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEE
T ss_pred ccCCCCcEEEEECCCCCHHHHHHHHHHHHHHhhhcc-c---CCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeC
Confidence 345789999999998765556678889998887632 2 679999999999999999999999999999999999999
Q ss_pred ccccc
Q 047470 112 SFGKL 116 (757)
Q Consensus 112 ~~~~~ 116 (757)
+.++.
T Consensus 109 ~~v~~ 113 (114)
T 2w2n_P 109 SSVFA 113 (114)
T ss_dssp EEEEE
T ss_pred ceEec
Confidence 88754
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=5.7e-10 Score=125.75 Aligned_cols=97 Identities=15% Similarity=0.224 Sum_probs=63.1
Q ss_pred eeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHH--hCCCcEEEeCCCCCCC---CCccCHHHHHHHHHHhCCcEEEE
Q 047470 249 RGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAI--ADGVDIMSLSLGFDQT---PYFNDVIAIASLSAIENGIVVVC 323 (757)
Q Consensus 249 ~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~--~~g~dVIn~SlG~~~~---~~~~~~~~~a~~~a~~~Gi~vV~ 323 (757)
.+++++..++.|-..+ .......++..+++.. .+-++|||+|||.... ..+.+.+...+..+..+||.|++
T Consensus 262 ~a~~~~i~~~~~~~~g----~~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e~~~~~~y~~~~~~~~~~~~~~Gitv~~ 337 (544)
T 3edy_A 262 MSAGANISTWVYSSPG----RHEGQEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLF 337 (544)
T ss_dssp HHHSTTSEEEEECCCS----CCTTCCHHHHHHHHHTTCSSCCSEEEEECCEEGGGSCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred hccCCCceEEEEecCC----cccccccHHHHHHHHhccCCCCcEEEecCCCcccccCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3555666665554322 1112234454444433 3568999999999752 22334555666678899999999
Q ss_pred ecCCCC-CCC----------CcccCCCceEEeccccc
Q 047470 324 AAGNDG-FPR----------SIHNGAPWITTVGAGTL 349 (757)
Q Consensus 324 AAGN~g-~~~----------~~~~~ap~~itVgas~~ 349 (757)
|+||+| ... .+++..||+++||+++.
T Consensus 338 ASGD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 338 ASGDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp ECCSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred ecCCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 999999 432 45667899999999765
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-09 Score=90.32 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=58.3
Q ss_pred CCCCceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEecc
Q 047470 33 NEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPES 112 (757)
Q Consensus 33 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~ 112 (757)
...+++|||+||++...+. ..+++++.. +.++.++|++ |+||+++++++++++|+++|+|.+||+|+
T Consensus 5 ~~i~~~YIV~~k~~~~~~~------~~~~~~~~~------g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~ 71 (80)
T 3cnq_P 5 SNGEKKYIVGFKQGFKSCA------KKEDVISEK------GGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDK 71 (80)
T ss_dssp ---CCEEEEEECTTCCSHH------HHHHHHHTT------TCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECC
T ss_pred ccCCCCEEEEECCCCChHH------HHHHHHHHc------CCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCc
Confidence 4578999999999874321 112233322 6799999998 99999999999999999999999999999
Q ss_pred cccccccC
Q 047470 113 FGKLFTTH 120 (757)
Q Consensus 113 ~~~~~~~~ 120 (757)
.++++++.
T Consensus 72 ~v~~~tt~ 79 (80)
T 3cnq_P 72 LYRALSAT 79 (80)
T ss_dssp EEEECCC-
T ss_pred EEEEeeec
Confidence 99887654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=98.82 E-value=3.2e-09 Score=95.58 Aligned_cols=81 Identities=12% Similarity=0.018 Sum_probs=64.0
Q ss_pred CCCCCceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEec
Q 047470 32 RNEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPE 111 (757)
Q Consensus 32 ~~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~ 111 (757)
....+++|||+||++........+.+++.+++++.. . +.++.|+|++.|+||+++++++++++|+++|+|.+|+++
T Consensus 43 ~~~Ip~~YIV~~K~~~~~~~~~~~~~~l~~~~~~r~-~---g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D 118 (124)
T 2qtw_A 43 PWRLPGTYVVVLKEETHLSQSERTARRLQAQAARRG-Y---LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEED 118 (124)
T ss_dssp GGEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTT-C---CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEE
T ss_pred ccCCCCCEEEEECCCCCHHHHHHHHHHHHHHHhhcc-c---CCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeC
Confidence 345789999999998754444444455555443321 1 579999999999999999999999999999999999999
Q ss_pred ccccc
Q 047470 112 SFGKL 116 (757)
Q Consensus 112 ~~~~~ 116 (757)
+.++.
T Consensus 119 ~~v~a 123 (124)
T 2qtw_A 119 SSVFA 123 (124)
T ss_dssp EEEEE
T ss_pred ceEec
Confidence 88754
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=98.68 E-value=3e-08 Score=81.37 Aligned_cols=70 Identities=11% Similarity=0.189 Sum_probs=55.9
Q ss_pred ceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEe-cceeeEEEEEcCHHHHHHHHcC--CCeEEEEeccc
Q 047470 37 QTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSY-NHVIQGFSARLTPSQLSEIEKS--PAHLATYPESF 113 (757)
Q Consensus 37 ~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~g~s~~l~~~~~~~L~~~--p~V~~V~~~~~ 113 (757)
+.|||.||++...+....+.+++... +.++.+.| ...|+||+++++++++++|+++ |.|.+||+|+.
T Consensus 3 ~sYIV~lk~~~~~~~~~~~~~~~~~~----------gg~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~ 72 (76)
T 1v5i_B 3 GKFIVIFKNDVSEDKIRETKDEVIAE----------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHV 72 (76)
T ss_dssp EEEEEEECTTCCHHHHHHHHHHHHHH----------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCE
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHhh----------CCceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcE
Confidence 78999999987544444444554432 45778999 3799999999999999999999 89999999988
Q ss_pred ccc
Q 047470 114 GKL 116 (757)
Q Consensus 114 ~~~ 116 (757)
++.
T Consensus 73 v~~ 75 (76)
T 1v5i_B 73 AHA 75 (76)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-06 Score=82.83 Aligned_cols=103 Identities=10% Similarity=0.045 Sum_probs=78.7
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCC-------ccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-------C
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDE-------VTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-------I 443 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~-------~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~-------~ 443 (757)
..-.+++.........|.+....... .+|||+|++||..|+|.+|..+++.+|| .++|++|+.. +
T Consensus 70 v~G~lv~~~~~~~~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA-~avIIyNn~~~g~~~~~m 148 (194)
T 3icu_A 70 VAGVLVPPDGPGALNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGA-SGAVIFNFPGTRNEVIPM 148 (194)
T ss_dssp EEEEEECBSSTTCTTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTC-SEEEEECCTTCTTCCCCC
T ss_pred cEEEEEecCCCCCcCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCC-cEEEEEeCCCCCCceeee
Confidence 34455555433467899987653222 4789999999965999999999999999 9999999742 1
Q ss_pred C-CCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeee
Q 047470 444 D-SDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFIL 482 (757)
Q Consensus 444 ~-~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~ 482 (757)
. .....||+++|+..+|+.|++++.++. ..+.+|.+..
T Consensus 149 ~~~~~~~IPsv~Is~~~G~~L~~~L~~G~-~Vtvti~vg~ 187 (194)
T 3icu_A 149 SHPGAVDIVAIMIGNLKGTKILQSIQRGI-QVTMVIEVGK 187 (194)
T ss_dssp CCTTCCSSEEEEECHHHHHHHHHHHHTTC-CEEEEEEEEE
T ss_pred cCCCCCceeEEEECHHHHHHHHHHHHCCC-eEEEEEECCC
Confidence 1 223469999999999999999999987 6666666544
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=97.61 E-value=7.6e-05 Score=58.82 Aligned_cols=62 Identities=10% Similarity=0.187 Sum_probs=50.1
Q ss_pred ceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEeccccc
Q 047470 37 QTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGK 115 (757)
Q Consensus 37 ~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 115 (757)
.+|||.|+++.. ..+.++.. +.++.++|. .+++++++|+++.++.|+++|+|.+|++|...+
T Consensus 2 ~~~IV~f~~~~~----------~~~~i~~~------gG~i~~~~~-~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 2 IRVIVSVDKAKF----------NPHEVLGI------GGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp EEEEEEECGGGC----------CGGGGGGG------TCEEEEECS-SSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred eeEEEEEcCcch----------hHHHHHHC------CCEEEEEec-CCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 479999987521 11123333 789999997 799999999999999999999999999998764
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.015 Score=63.87 Aligned_cols=83 Identities=16% Similarity=0.340 Sum_probs=65.2
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC------CCC-CCccc
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD------IDS-DEYYI 450 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~------~~~-~~~~~ 450 (757)
...+++|.+. +.+.++...+++|||+++++|. |.+.+|..++...|| +|+|++++.. +.. ....+
T Consensus 93 v~a~lv~~~~------G~~~D~~~~dv~GkIvlv~~g~-~~~~~k~~~A~~~GA-~gvIi~~~~~~~~~g~~~~~~~~~I 164 (421)
T 2ek8_A 93 VTAELVYVGL------GTTADVAGKDLNGKIALIQRGN-ISFADKVRNAAKQGA-KAVIIYNNTDGKLNGTLGGSDASFV 164 (421)
T ss_dssp EEEEEEECTT------CCTTTTTTSCCTTSEEEEECCS-SCHHHHHHHHHHTTC-SEEEEECSSSSCCCCBCSSCCTTCC
T ss_pred cceEEEECCC------CChhhcCCCCcCceEEEEeCCC-CCHHHHHHHHHHCCC-eEEEEEeCCCcccccccCCCCCCCc
Confidence 4566777542 2223344458999999999999 999999999999999 9999998854 111 24568
Q ss_pred cEEEechhhHHHHHHHHh
Q 047470 451 PSLILPTSAGTSIRQYVT 468 (757)
Q Consensus 451 p~~~i~~~~g~~l~~~~~ 468 (757)
|.+.++..+++.|+.++.
T Consensus 165 P~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 165 AAVGITKQEGDALAANLR 182 (421)
T ss_dssp EEEEECHHHHHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHHhh
Confidence 999999999999999984
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.1 Score=57.39 Aligned_cols=95 Identities=15% Similarity=0.150 Sum_probs=66.6
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCc---------hhHH----HHHHHHcCCeEEEEeccCCC--
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRID---------TYSQ----MEEVDRAGAYAAIFLTDTPD-- 442 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~---------~~~k----~~~~~~~Ga~~g~i~~~~~~-- 442 (757)
.+.|+++..+ ...|.. ..+.+++||||+++++. |. +..| ..++...|| +|+|+++...
T Consensus 106 vta~lV~v~~---~~~~~~--~~~~dvkGKIVlv~~~~-~~~~~~~~y~~~~~kr~~~a~~A~~aGA-~avIi~~~~~~~ 178 (444)
T 3iib_A 106 LSATIVRFDT---LQDLQN--AEAGSLNDKIAFIDAKT-ERHRDGKGYGQTASGRSRGAVAAAEKGA-VGIIIRSIGTDH 178 (444)
T ss_dssp EEEEEEEESS---HHHHHT--SCTTTTTTCEEEECCCC-CCCTTCHHHHHHHHHHHHHHHHHHHTTC-SEEEEECSCSCC
T ss_pred eEEEEEecCC---HHHHhh--ccccccCccEEEEeCCC-CCCcccccccchhhhhhhHHHHHHHCCC-eEEEEEccCCcc
Confidence 5778888653 122322 23568999999999987 74 3344 356899999 9999998643
Q ss_pred --------CC-C-CCccccEEEechhhHHHHHHHHhcCCCCceEEEEe
Q 047470 443 --------ID-S-DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRF 480 (757)
Q Consensus 443 --------~~-~-~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~ 480 (757)
+. . ....||++.|+..+++.|+..+..+. ..++++..
T Consensus 179 ~~~~~tg~~~~~~~~~~IP~~~Is~~da~~L~~~l~~g~-~~~v~l~~ 225 (444)
T 3iib_A 179 DRMAHTGMMRYEEGVTAIPAAAISNPDADLINAMLKRDK-EVVISLEL 225 (444)
T ss_dssp SSCCCCCBCCCCTTSCCCCEEEECHHHHHHHHHHHTTTC-CCEEEEEE
T ss_pred cccccCCccccCCCCCCCCeEEecHHHHHHHHHHHhCCC-CeEEEEEE
Confidence 11 1 13468999999999999999998765 44444443
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.19 Score=44.55 Aligned_cols=73 Identities=14% Similarity=0.140 Sum_probs=54.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEECCccEEEEEE
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQYNHTVSSPV 752 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~~~~v~~P~ 752 (757)
..+.+.+++|.|+....|+..... ..+++|....+. +|+++.++|+|.+.. .+.+.+.|.+.-.++..+.+++
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L~-pg~~~~i~V~F~P~~--~g~~~~~l~v~~~~g~~~~v~L 114 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTLN-VGESMQLEVEFEPQS--VGDHSGRLIVCYDTGEKVFVSL 114 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEEC-TTCEEEEEEEECCSS--SBCCCCBCEEEESSSCEECCEE
T ss_pred eEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEEC-CCCEEEEEEEEEcCC--CccEEEEEEEEECCCCEEEEEE
Confidence 678889999999998888766533 366789998887 899999999999963 5566777666643445555443
|
| >3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ... | Back alignment and structure |
|---|
Probab=93.61 E-value=0.072 Score=61.76 Aligned_cols=91 Identities=21% Similarity=0.229 Sum_probs=64.3
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC---------------
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD--------------- 442 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~--------------- 442 (757)
...++||.+.....++.........+++|||+|+++|. |.+.+|..+|..+|| +|+|++++..
T Consensus 127 v~g~lV~v~~G~~~Df~~L~~~~~~~v~GkIvlv~~G~-~~~~~Kv~~A~~~GA-~gviiy~dp~d~~~~g~~~yP~~~~ 204 (707)
T 3fed_A 127 PEGDLVYVNYARTEDFFKLEREMGINCTGKIVIARYGK-IFRGNKVKNAMLAGA-IGIILYSDPADYFAPEVQPYPKGWN 204 (707)
T ss_dssp CEECEEECTTCCHHHHHHHHHTSCCCCTTCEEEEECCS-SCHHHHHHHHHHTTC-SEEEEECCHHHHCCTTCCBTTTSSB
T ss_pred eEEEEEEecCCchhhHHHHHhccCCCCCCeEEEEECCC-CCHhHHHHHHHHCCC-EEEEEEcCchhccccccccCCCCcc
Confidence 46678886532111111100001457999999999999 999999999999999 9999998510
Q ss_pred ----------CC-----CC----------------------CccccEEEechhhHHHHHHHHhcC
Q 047470 443 ----------ID-----SD----------------------EYYIPSLILPTSAGTSIRQYVTGK 470 (757)
Q Consensus 443 ----------~~-----~~----------------------~~~~p~~~i~~~~g~~l~~~~~~~ 470 (757)
+. .| .-.||++.|+..+++.|+..+...
T Consensus 205 ~p~~~vqrGsv~~~~~~GDp~TPG~ps~~~~~r~~~~~~~~~p~IP~~pIS~~da~~Ll~~l~g~ 269 (707)
T 3fed_A 205 LPGTAAQRGNVLNLNGAGDPLTPGYPAKEYTFRLDVEEGVGIPRIPVHPIGYNDAEILLRYLGGI 269 (707)
T ss_dssp CCTTCCCCCCCCCCTTCCSTTCTTSCCCTTCCCCCGGGCTTCCSSCEEEECHHHHHHHHHTBCBS
T ss_pred CCCccccccceecccCCCCCCCCCCcccCCCcccChhhccCCCCCCeEecCHHHHHHHHHHhcCC
Confidence 00 11 135899999999999999987643
|
| >3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A | Back alignment and structure |
|---|
Probab=92.90 E-value=0.1 Score=59.81 Aligned_cols=85 Identities=13% Similarity=0.180 Sum_probs=61.8
Q ss_pred ceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-C---C---------
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD-I---D--------- 444 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~-~---~--------- 444 (757)
...++||.+.... ++-..+. .+++|||+|+++|. |.+.+|..++...|| +|+|++++.. . .
T Consensus 108 v~g~lV~vg~G~~---~D~~~l~-vdv~GkIvlv~~g~-~~~~~K~~~A~~~GA-~gvii~~~~~~~~~~~~~~~~~G~~ 181 (640)
T 3kas_A 108 VTGKLVHANFGTK---KDFEDLY-TPVNGSIVIVRAGK-ITFAEKVANAESLNA-IGVLIYMDQTKFPIVNAELSFFGHA 181 (640)
T ss_dssp EEECEEECTTCCH---HHHHTCS-SCCTTSEEEEESCS-SCHHHHHHHHHTTTC-SEEEEECCTTTCCCSCTTCCCCEEC
T ss_pred eEEEEEEecCCCh---hhHHHhh-cccCCcEEEEecCC-CCHHHHHHHHHHCCC-eEEEEEecccccccccccccccccc
Confidence 3567888653111 0111122 57999999999999 999999999999999 9999998643 0 0
Q ss_pred ----CC---------------------CccccEEEechhhHHHHHHHHh
Q 047470 445 ----SD---------------------EYYIPSLILPTSAGTSIRQYVT 468 (757)
Q Consensus 445 ----~~---------------------~~~~p~~~i~~~~g~~l~~~~~ 468 (757)
.+ ...||+..|+..+++.|+..+.
T Consensus 182 ~~~~Gdp~tpg~ps~~~~~~~~~~~~~~p~IP~~~Is~~~a~~Ll~~l~ 230 (640)
T 3kas_A 182 HLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 230 (640)
T ss_dssp CSSSSCSCCCSSCC---CCCCCCSSCCCCSSCEEECCHHHHHHHHTTEE
T ss_pred ccCCCCCCCCCcccccccccccccccCCCCCCEEecCHHHHHHHHHHcc
Confidence 00 1258999999999999987654
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.09 Score=57.87 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=26.7
Q ss_pred CCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCC
Q 047470 489 PAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPN 527 (757)
Q Consensus 489 ~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~ 527 (757)
..+.++.||++||.. ||+|||++|+++++.+
T Consensus 182 ~~~~~~~~S~~g~~v--------dv~ApG~~i~s~~~~g 212 (441)
T 1y9z_A 182 SNLDHAAFSQYTDQV--------EISGPGEAILSTVTVG 212 (441)
T ss_dssp TTCCBCTTSCCCTTE--------EEEEECSSEEEECSTT
T ss_pred CCCCCCccccCCCce--------EEEeccCCeeccccCC
Confidence 356789999999876 9999999999998754
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=86.40 E-value=0.31 Score=59.63 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=22.7
Q ss_pred CCCCCccEEEEEecCCccCCcccc
Q 047470 137 ARYGQGVIIGIIDTGIWPESESFH 160 (757)
Q Consensus 137 ~~~G~Gv~VgVIDtGid~~Hp~f~ 160 (757)
.+.|+||+|||+|||||+.+|.|.
T Consensus 32 ~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 32 EYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TCSSTTCEEEEEESCCCTTSTTSS
T ss_pred CCCCCccEEEEEeCCCCCCCCcce
Confidence 578999999999999999999997
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.44 E-value=4.3 Score=34.74 Aligned_cols=69 Identities=10% Similarity=-0.008 Sum_probs=50.8
Q ss_pred eEEEEEEEeecCCCceeEEEEEeC-CCCcEEEEecCeEEEeccceeEEEEEEEEEccCCCceEEEEEEEEECC
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEF-PAGMNIRIEPSTLKFTQKYQLLDFALSVEIDRESPRVSYGYLKWIDQY 744 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~-p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~~~~~~~G~~~~~~~~ 744 (757)
..+.+.+++|.|+....|+..... +.+...+++|..-.+. +|++++++|+|.+.. .+.+.-.|++.-++
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i~-pg~~~~i~V~f~~~~--~g~f~~~i~v~~~g 96 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGIIE-PSGVQAIQISFSSII--LGNFEEEFLVNVNG 96 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEEC-TTBCCEEEEEECCCC--CEEEEEEECEEESS
T ss_pred EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEEC-CCCEEEEEEEEECCC--cceEEEEEEEEECC
Confidence 567788999999999999883211 1123467789988887 799999999999964 34555667777653
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.77 E-value=16 Score=32.69 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=61.2
Q ss_pred eEEEEEEEeecCCCceeEEEEEeCC----CCcEEEEecCeEEEeccceeEEEEEEEEEccC-------CCceEEEEEEEE
Q 047470 673 AKNFSRVVKNVGAEDSIYRAVLEFP----AGMNIRIEPSTLKFTQKYQLLDFALSVEIDRE-------SPRVSYGYLKWI 741 (757)
Q Consensus 673 ~~~~~rtvtnv~~~~~ty~~~v~~p----~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~~-------~~~~~~G~~~~~ 741 (757)
..+-+.+++|.|....+|++..... ..--++++|..-++. +|++.++.|++..+.. -..-.+--|++.
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L~-Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~ 122 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYLE-PNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 122 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEEC-TTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEE
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCcccccC-CCCeeEEEEEEEEccCcccccccchhhhheeEEEE
Confidence 5577788999999999999874321 123467789988887 8999999999986431 123456677777
Q ss_pred ECCccEEEEEEEEEe
Q 047470 742 DQYNHTVSSPVVAIK 756 (757)
Q Consensus 742 ~~~~~~v~~P~~v~~ 756 (757)
=.++....+|+...|
T Consensus 123 Ve~G~d~fI~v~g~~ 137 (140)
T 3qbt_B 123 LDRGKDYFLTISGNY 137 (140)
T ss_dssp ETTSCEEEEEEEEEE
T ss_pred eecCCcEEEEEeccc
Confidence 657888899998765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 757 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 2e-42 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 2e-16 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 3e-07 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 5e-14 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 0.004 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 7e-14 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 5e-06 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 3e-13 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 8e-07 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 1e-11 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 7e-05 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-11 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 6e-11 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 8e-10 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 3e-04 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 4e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 8e-08 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-07 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 3e-07 | |
| d1ga6a_ | 369 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pse | 6e-06 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 1e-04 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 157 bits (398), Expect = 2e-42
Identities = 81/483 (16%), Positives = 144/483 (29%), Gaps = 85/483 (17%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
I IID+G + +
Sbjct: 21 AGNRTICIIDSGYDRSHNDLNANNVT---------------------------------- 46
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
G N S ++ + HGTH + T A G+ P + +
Sbjct: 47 ----GTNNSGTGNWYQPGNNNAHGTHVAGTIAAIA---------NNEGVVGVMPNQNANI 93
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADG-VDIMSLSLGFDQTPYFNDVIAIASLSAIENG 318
+ V + +S ++A +D + G +++++SLG + NG
Sbjct: 94 HIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALNTH---YNNG 150
Query: 319 IVVVCAAGNDGF-PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYI 377
++++ AAGN G S + +V A + A + + G S
Sbjct: 151 VLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVT 210
Query: 378 TDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFL 437
+ + + VV + T ++ + A
Sbjct: 211 VG----------EGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAEC 260
Query: 438 TDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFS 497
T S + L G Y + K+ + +
Sbjct: 261 TVNGTSFSCGNMANKICLVERVGNQGSSYPEINSTKACKT---------AGAKGIIVYSN 311
Query: 498 SRGPDPISPGIL--KPDIVAPGVDVLAAVAPNIPFIEIGNYELVT----DYALFSGTSMA 551
S P +P ++ DI P V V A + + + DY ++GTSMA
Sbjct: 312 SALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMA 371
Query: 552 APHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNK 611
PHV+GVA L+ + H + S + +R+A+ TA ++ V G G I+
Sbjct: 372 TPHVSGVATLVWSYHPECSASQVRAALNATADDLS--------VAGRDNQTGYGMINAVA 423
Query: 612 AMD 614
A
Sbjct: 424 AKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 80.9 bits (198), Expect = 2e-16
Identities = 34/112 (30%), Positives = 46/112 (41%), Gaps = 13/112 (11%)
Query: 511 PDIVAPGVDVLAAVAPNIPFIEIGNYELVTD-----YALFSGTSMAAPHVAGVAALLKAI 565
+ APGV +L+ V G+ E V Y + GTSMAAPHV GV A+L
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 566 HRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGL 617
+ P IR + TA+ N D G G + + A+ L
Sbjct: 398 FPNAKPWQIRKLLENTAFDFN--------GNGWDHDTGYGLVKLDAALQGPL 441
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 51.6 bits (122), Expect = 3e-07
Identities = 38/220 (17%), Positives = 65/220 (29%), Gaps = 54/220 (24%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
LW A G +I+ ++DTG+ + + ++ G
Sbjct: 147 LWEEAS-GTNIIVAVVDTGVDGTHPDLEGQVIAGYRPAFDEELPAG-------------- 191
Query: 193 ARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIA 252
+ GTH + T A G+A
Sbjct: 192 ---------------------TDSSYGGSAGTHVAGTIAAKK---------DGKGIVGVA 221
Query: 253 PRAHVAMYKVLWATDTEES----AASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIA 308
P A + + V AG+ A G +M+ S ++ +
Sbjct: 222 PGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSW---GGWGYSYTMK 278
Query: 309 IASLSAIENGIVVVCAAGNDGFPRSIHN--GAPWITTVGA 346
A A+E+G+V+V +AGN+ G P + V A
Sbjct: 279 EAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAA 318
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 70.7 bits (172), Expect = 5e-14
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 17/98 (17%)
Query: 516 PGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIR 575
G+D++A P + + + + YA +GTSMA PHVAG AAL+K + WS IR
Sbjct: 188 AGLDIVA------PGVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIR 241
Query: 576 SAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAM 613
+ + TA + +G+G ++ A
Sbjct: 242 NHLKNTATSLGSTN-----------LYGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 37.6 bits (86), Expect = 0.004
Identities = 40/215 (18%), Positives = 65/215 (30%), Gaps = 58/215 (26%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
G GV + ++DTGI +
Sbjct: 16 AHNRGLTGSGVKVAVLDTGISTHPD----------------------------------- 40
Query: 193 ARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIA 252
+N+ F G + G HV G G+A
Sbjct: 41 ------------LNIRGGASFVP-----GEPSTQDGNGHGTHVAGTIAALNNSIGVLGVA 83
Query: 253 PRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASL 312
P A + KVL A+ + S + G++ A +G+ + + +P + + A
Sbjct: 84 PSAELYAVKVLGASGSGSV--SSIAQGLEWAGNNGMHVAN---LSLGSPSPSATLEQAVN 138
Query: 313 SAIENGIVVVCAAGNDGFPRSIHNG-APWITTVGA 346
SA G++VV A+GN G + VGA
Sbjct: 139 SATSRGVLVVAASGNSGAGSISYPARYANAMAVGA 173
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 70.4 bits (171), Expect = 7e-14
Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 24/103 (23%)
Query: 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDW 569
+ +++APG V + N YA +GTSMA+PHVAG AAL+ + H +
Sbjct: 194 ELEVMAPGAGVYSTYPTN-------------TYATLNGTSMASPHVAGAAALILSKHPNL 240
Query: 570 SPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKA 612
S + +R+ + +TA + + +G G I+ A
Sbjct: 241 SASQVRNRLSSTATYLG-----------SSFYYGKGLINVEAA 272
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 46.5 bits (109), Expect = 5e-06
Identities = 36/222 (16%), Positives = 66/222 (29%), Gaps = 55/222 (24%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
+ G V + ++DTGI
Sbjct: 16 VQAQGFKGANVKVAVLDTGIQASHPDL--------------------------------- 42
Query: 193 ARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIA 252
NV F + G +T G HV G G+A
Sbjct: 43 -------------NVVGGASFVA-----GEAYNTDGNGHGTHVAGTVAALDNTTGVLGVA 84
Query: 253 PRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASL 312
P + KVL ++ + S +++G++ A +G+D++++SLG +
Sbjct: 85 PSVSLYAVKVLNSSGSGSY--SGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAY 142
Query: 313 SAIENGIVVVCAAGNDGFPRSIH--NGAPWITTVGAGTLDRS 352
+ + +GN G +I + VGA + +
Sbjct: 143 ARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSN 184
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 68.8 bits (167), Expect = 3e-13
Identities = 36/123 (29%), Positives = 55/123 (44%), Gaps = 32/123 (26%)
Query: 492 HVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMA 551
ASFSS GP + D++APGV + + + N Y ++GTSMA
Sbjct: 185 QRASFSSVGP--------ELDVMAPGVSIQSTLPGN-------------KYGAYNGTSMA 223
Query: 552 APHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNK 611
+PHVAG AAL+ + H +W+ +RS++ T + +G G I+
Sbjct: 224 SPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG-----------DSFYYGKGLINVQA 272
Query: 612 AMD 614
A
Sbjct: 273 AAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 49.1 bits (116), Expect = 8e-07
Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 52/219 (23%)
Query: 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIG 192
L G V + +ID+GI K+ G
Sbjct: 16 LHSQGYTGSNVKVAVIDSGIDSSHPDL-----------------------------KVAG 46
Query: 193 ARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIA 252
S + + +D H G HV G G+A
Sbjct: 47 GASMVPS------------ETNPFQDNNSH---------GTHVAGTVAALNNSIGVLGVA 85
Query: 253 PRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASL 312
P A + KVL A + + S ++ G++ AIA+ +D++++SLG ++
Sbjct: 86 PSASLYAVKVLGADGSGQY--SWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAV 143
Query: 313 SAIENGIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDR 351
++ + G G ++ + + + G +D
Sbjct: 144 ASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS 182
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 64.1 bits (154), Expect = 1e-11
Identities = 29/117 (24%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 503 PISPGILKPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL 562
P G +KPD++APG +L+A ++ + YA GTSMA P VAG A L
Sbjct: 210 PTKDGRIKPDVMAPGTFILSAR-SSLAPDSSFWANHDSKYAYMGGTSMATPIVAGNVAQL 268
Query: 563 KAIHRD-----WSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMD 614
+ P+ +++A++ A + + + G G + +K+++
Sbjct: 269 REHFVKNRGITPKPSLLKAALIAGAADIG--------LGYPNGNQGWGRVTLDKSLN 317
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 43.3 bits (100), Expect = 7e-05
Identities = 34/192 (17%), Positives = 61/192 (31%), Gaps = 46/192 (23%)
Query: 140 GQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKG 199
GQG I+ + DTG+ + G+ A
Sbjct: 21 GQGQIVAVADTGLDTGRNDSSMH------EAFRGKITALYALG----------------- 57
Query: 200 LQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAM 259
++A D GHGTH + + T +G+AP+A++
Sbjct: 58 ------------RTNNANDTNGHGTHVAGS-----------VLGNGSTNKGMAPQANLVF 94
Query: 260 YKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLSAIENGI 319
++ + S++ QA + G I + S G + +N +
Sbjct: 95 QSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDSRNVDDYVRKNDM 154
Query: 320 VVVCAAGNDGFP 331
++ AAGN+G
Sbjct: 155 TILFAAGNEGPN 166
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 63.7 bits (153), Expect = 2e-11
Identities = 27/99 (27%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 510 KPDIVAPGVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDW 569
+I APG V + Y SGTSMA PHV+G+AA + A +
Sbjct: 224 DIEISAPGSSVYSTWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSL 270
Query: 570 SPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHID 608
S +RS + A V+ + G G G
Sbjct: 271 SNTQLRSNLQERAKSVD-IKGGYGAAIGDDYASGFGFAR 308
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.1 bits (149), Expect = 6e-11
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEI---GVVPAT 598
+GTS +AP AG+ AL +++ + ++ ++ T+ P + ++ GV
Sbjct: 253 TESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKV 312
Query: 599 PLDFGAGHIDPNKAMD 614
+G G +D +
Sbjct: 313 SHSYGYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 58.6 bits (140), Expect = 8e-10
Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPL- 600
GTS AAP AGV LL + + + ++ + +A + + A
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 601 ---DFGAGHIDPNKAMD 614
+G G ID +K ++
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 3e-04
Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 47/213 (22%)
Query: 132 GLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLI 191
LW + G GV+ I+D G+ E+E D
Sbjct: 37 DLWYNNITGAGVVAAIVDDGLDYENEDLKDN----------------------------- 67
Query: 192 GARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGI 251
+DF+ + ++ G+
Sbjct: 68 -------------FCAEGSWDFND-NTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVGV 113
Query: 252 APRAHVAMYKVLWATDTEESAASDVLAGMDQAI----ADGVDIMSLSLGFDQTPYFNDVI 307
A ++ ++L T E A+ ++ G+D + G L ++
Sbjct: 114 GYNAKISGIRILSGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALV 173
Query: 308 AIASLSAIENGIVVVCAAGNDGFPRSIHNGAPW 340
+ G + V A+GN G N +
Sbjct: 174 KGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGY 206
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 52.8 bits (125), Expect = 4e-08
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 541 DYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYP 584
SGTSMA PHVAG+AA L + + + +A R I TA
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTANK 258
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 52.3 bits (124), Expect = 8e-08
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 542 YALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLD 601
YA SGTSMA+PHVAG+AALL + + IR AI TA + T
Sbjct: 219 YAYMSGTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTADK----------ISGTGTY 266
Query: 602 FGAGHIDPNKAMD 614
F G I+ A+
Sbjct: 267 FKYGRINSYNAVT 279
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 50.7 bits (120), Expect = 2e-07
Identities = 39/214 (18%), Positives = 57/214 (26%), Gaps = 54/214 (25%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
W + G I +IDTG+ K + N
Sbjct: 24 WDVTKGSSGQEIAVIDTGVDYTHPDLDGKVIKGYDFVDNDYDPM---------------- 67
Query: 194 RSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAP 253
D HGTH + AA G+AP
Sbjct: 68 ------------------------DLNNHGTHVAGIAAAETNNA--------TGIAGMAP 95
Query: 254 RAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLS 313
+ + L SD+ + A G ++++L + A
Sbjct: 96 NTRILAVRAL--DRNGSGTLSDIADAIIYAADSGAEVINL---SLGCDCHTTTLENAVNY 150
Query: 314 AIENGIVVVCAAGNDGFPRSIHNG-APWITTVGA 346
A G VVV AAGN+G + + VGA
Sbjct: 151 AWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGA 184
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 50.5 bits (119), Expect = 3e-07
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 541 DYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPL 600
YA SGTSMA PHVAGVA LL + + S + IR+AI TA + T
Sbjct: 217 TYASLSGTSMATPHVAGVAGLLAS--QGRSASNIRAAIENTADK----------ISGTGT 264
Query: 601 DFGAGHIDPNKAMD 614
+ G ++ KA+
Sbjct: 265 YWAKGRVNAYKAVQ 278
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} Length = 369 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Score = 46.9 bits (110), Expect = 6e-06
Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 17/182 (9%)
Query: 201 QAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMY 260
A G+ + + + G A A +
Sbjct: 49 SANGLASVNTQTIQTGSSNGDYSDDQQGQGEWDLDSQSIV---------GSAGGAVQQLL 99
Query: 261 KVLWATDTEESAASDVLAGMDQAIAD-GVDIMSLSLGFDQ----TPYFNDVIAIASLSAI 315
+ D S + + +QA++D ++++SLG+ + +A
Sbjct: 100 FYMA--DQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAA 157
Query: 316 ENGIVVVCAAGNDGFPRSIHNGAPWITTVGAGTLDRSFHAT-VTLDNGLTFKGISYFPES 374
G ++G++G + G P +T S + V T +Y E+
Sbjct: 158 AQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLYTTSAGAYSNET 217
Query: 375 VY 376
V+
Sbjct: 218 VW 219
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 42.8 bits (99), Expect = 1e-04
Identities = 32/211 (15%), Positives = 54/211 (25%), Gaps = 52/211 (24%)
Query: 134 WPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGA 193
+P GQG I II G + S +
Sbjct: 17 FPEGLDGQGQCIAIIALGGGYDETSLAQ---------------YFASLGVSAPQ------ 55
Query: 194 RSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAP 253
+ G + G E A +AP
Sbjct: 56 --------------------VVSVSVDGATNQPTGDPNGPDGEVELDIEV----AGALAP 91
Query: 254 RAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDIMSLSLGFDQTPY---FNDVIAIA 310
A +A+Y ++ + + I+S+S G + + + A
Sbjct: 92 GAKIAVYFAPN----TDAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAPASIAAMNRA 147
Query: 311 SLSAIENGIVVVCAAGNDGFPRSIHNGAPWI 341
L A G+ V+ AAG+ G +G +
Sbjct: 148 FLDAAALGVTVLAAAGDSGSTDGEQDGLYHV 178
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 757 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.95 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 98.87 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 98.7 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 96.26 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 95.93 | |
| d3bi1a2 | 233 | Glutamate carboxypeptidase II {Human (Homo sapiens | 92.52 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=9.3e-53 Score=489.88 Aligned_cols=369 Identities=23% Similarity=0.233 Sum_probs=266.1
Q ss_pred CCCCceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHH----H--HHcCCCeE
Q 047470 33 NEDHQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLS----E--IEKSPAHL 106 (757)
Q Consensus 33 ~~~~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~----~--L~~~p~V~ 106 (757)
+..+++|||+||+.. ...+ ++++. +.++++.+. .++.+.++++...++ . +..+|+|+
T Consensus 28 ~~~~~~~iV~~k~~~------~~~~----~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 90 (671)
T d1r6va_ 28 EYTEGKILVGYNDRS------EVDK----IVKAV------NGKVVLELP-QIKVVSIKLNGMTVKQAYDKIKALALKGIR 90 (671)
T ss_dssp SBCTTEEEEEESSHH------HHHH----HHHHH------TCEEEEEEG-GGTEEEEECSSCCHHHHHHHHTTSCCSSEE
T ss_pred CcCCCeEEEEECCcc------CHHH----HHHhc------CCEEEEEec-ccceEEEEcCchhHHHHHHHHHHhcCCCce
Confidence 346899999999763 1222 23322 467777776 578888888654332 2 23589999
Q ss_pred EEEeccccccccc----CCC-----------------------CccCCCCC--CCCCCCCCCCCccEEEEEecCCccCCc
Q 047470 107 ATYPESFGKLFTT----HSP-----------------------NFLGLKPN--SGLWPSARYGQGVIIGIIDTGIWPESE 157 (757)
Q Consensus 107 ~V~~~~~~~~~~~----~s~-----------------------~~~g~~~~--~~~~~~~~~G~Gv~VgVIDtGid~~Hp 157 (757)
+|+|+...++... ..+ ..|+++.. ..+|....+|+||+|||||||||++||
T Consensus 91 ~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hp 170 (671)
T d1r6va_ 91 YVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEELSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHP 170 (671)
T ss_dssp EEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSSTTGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSG
T ss_pred EECcceeEeeccccccCCCccccccccccccccccCcCccccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCCh
Confidence 9999865543211 000 01222221 123333569999999999999999999
Q ss_pred cccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCCCCCCCCCchhHHHhhcccCCCC
Q 047470 158 SFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDSARDFFGHGTHTSSTAAGNHVEG 237 (757)
Q Consensus 158 ~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGThVAGiiag~~~~~ 237 (757)
+|.++ ++..+++..+.+. ....++.|..||||||||||||+..
T Consensus 171 dl~~~---------------------------~~~~~~~~~~~~~--------~~~~~~~d~~gHGT~VAGiiaa~~~-- 213 (671)
T d1r6va_ 171 DLEGQ---------------------------VIAGYRPAFDEEL--------PAGTDSSYGGSAGTHVAGTIAAKKD-- 213 (671)
T ss_dssp GGTTT---------------------------BCCEEEGGGTEEE--------CTTCBCCTTCSHHHHHHHHHHCCCS--
T ss_pred hhcCC---------------------------cccCccccccCCC--------CCCCcCcccCCCCccccceeeeecc--
Confidence 99853 1222222211100 1112356788999999999999742
Q ss_pred CccccccCCceeeccCCceEEeeeccccC---CCCC-CCHHHHHHHHHHHHhCCCcEEEeCCCCCCCCCccCHHHHHHHH
Q 047470 238 VSHFGYAKGTARGIAPRAHVAMYKVLWAT---DTEE-SAASDVLAGMDQAIADGVDIMSLSLGFDQTPYFNDVIAIASLS 313 (757)
Q Consensus 238 ~~~~G~~~~~~~GvAP~A~l~~~kv~~~~---~~~g-~~~~~i~~ai~~a~~~g~dVIn~SlG~~~~~~~~~~~~~a~~~ 313 (757)
+..+.||||+|+|+++|+++.. ...+ ...+++++||+||+++|++|||||||+.. ....+..++..
T Consensus 214 -------~~g~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~---~~~~~~~ai~~ 283 (671)
T d1r6va_ 214 -------GKGIVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWG---YSYTMKEAFDY 283 (671)
T ss_dssp -------SSSCCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSC---CCHHHHHHHHH
T ss_pred -------ccceeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHHHhCCCcEEeccccccc---CChHHHHHHHH
Confidence 1224799999999999999621 1233 56778999999999999999999999864 33456667778
Q ss_pred HHhCCcEEEEecCCCC--CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCc
Q 047470 314 AIENGIVVVCAAGNDG--FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNK 391 (757)
Q Consensus 314 a~~~Gi~vV~AAGN~g--~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~ 391 (757)
+.++|+++|+||||++ .....++..|++|+|||.+.+..
T Consensus 284 a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~~--------------------------------------- 324 (671)
T d1r6va_ 284 AMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG--------------------------------------- 324 (671)
T ss_dssp HHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT---------------------------------------
T ss_pred HHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCCC---------------------------------------
Confidence 9999999999999999 44566778899999998532100
Q ss_pred ccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCC
Q 047470 392 SICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKN 471 (757)
Q Consensus 392 ~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~ 471 (757)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T d1r6va_ 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCCCcccc-----CCCccccceEeec
Q 047470 472 KSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNIPFIEI-----GNYELVTDYALFS 546 (757)
Q Consensus 472 ~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~-----~~~~~~~~y~~~s 546 (757)
...+++||||||.+ ||+|||++|+++++........ ........|..++
T Consensus 325 ------------------~~~~a~fS~~g~~~--------dv~APG~~i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~s 378 (671)
T d1r6va_ 325 ------------------TFRVAGFSSRSDGV--------SVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQ 378 (671)
T ss_dssp ------------------EEEECSSSCCCTTE--------EEEEECSSEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEE
T ss_pred ------------------cceeeeccCCCCCc--------eEEecCCCeEeecCCCCccccccccccccccCCCeeeeec
Confidence 11578999999986 9999999999998764322111 1112245899999
Q ss_pred cccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCCCCce
Q 047470 547 GTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGLI 618 (757)
Q Consensus 547 GTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv 618 (757)
|||||||||||++|||+|++|+|++.|||++|++||+++.. ...+..||||+||+.+||+..+.
T Consensus 379 GTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~--------~g~~~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 379 GTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNG--------NGWDHDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp SHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSS--------SSCBTTTBTCBCCHHHHHHCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC--------CCCCCCcccChhCHHHHhhCcCC
Confidence 99999999999999999999999999999999999998853 34677999999999999986543
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.8e-48 Score=434.16 Aligned_cols=368 Identities=23% Similarity=0.255 Sum_probs=240.7
Q ss_pred CCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCC
Q 047470 133 LWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYD 212 (757)
Q Consensus 133 ~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~ 212 (757)
+|. .+|+||+|||||||||++||+|.++ ++..+++.. ..+
T Consensus 16 ~~~--~~G~gv~VaviDtGid~~Hp~~~~~---------------------------~~~~~~~~~-----------~~~ 55 (435)
T d1v6ca_ 16 LSD--SQAGNRTICIIDSGYDRSHNDLNAN---------------------------NVTGTNNSG-----------TGN 55 (435)
T ss_dssp SCC--TTGGGCEEEEEESCCCTTSTTTTTS---------------------------EEEECCCTT-----------SCC
T ss_pred hhh--cCCCCcEEEEEcCCCCCCChhhccC---------------------------eeeeeccCC-----------CCC
Confidence 554 4899999999999999999999752 222222221 112
Q ss_pred CCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccC--CceEEeeeccccCCCCC-CCHHHHHHHHHHHHh-CCC
Q 047470 213 FDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAP--RAHVAMYKVLWATDTEE-SAASDVLAGMDQAIA-DGV 288 (757)
Q Consensus 213 ~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP--~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~-~g~ 288 (757)
...+.|++||||||||||||+..+ ..+.|||| +++|+.+|++. ... +...++++||+++++ +++
T Consensus 56 ~~~~~d~~gHGThvAgiiag~~~~---------~g~~GvAp~~~~~l~~~~~~~---~~~~~~~~~~~~a~~~a~~~~~~ 123 (435)
T d1v6ca_ 56 WYQPGNNNAHGTHVAGTIAAIANN---------EGVVGVMPNQNANIHIVKVFN---EAGWGYSSSLVAAIDTCVNSGGA 123 (435)
T ss_dssp TTCCCSSCCHHHHHHHHHHCCCSS---------SBCCCSSCSSCSEEEEEECEE---TTEECCSSCHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHHHhccCCC---------CceEEEecccCceeeeeeccc---ccccchhhhhhhHHHHHhhcccc
Confidence 234678899999999999997521 22479999 89999999998 444 677789999999986 599
Q ss_pred cEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCC------
Q 047470 289 DIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDN------ 361 (757)
Q Consensus 289 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~------ 361 (757)
+|||+|||... ....+..++..+.++|+++|+||||+| ...++++.++++|+||+++.+......-..+.
T Consensus 124 ~vin~S~g~~~---~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~a 200 (435)
T d1v6ca_ 124 NVVTMSLGGSG---STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISG 200 (435)
T ss_dssp SEEEECCCBSC---CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEE
T ss_pred eEEecccCCCC---CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEee
Confidence 99999999875 234455666688899999999999999 77788888999999999876644322111111
Q ss_pred -----------CcEEE-EEeecCCCCCC-c---eeeeEEccCC-----------CCccccc--CCCCCCCCccceEEEEe
Q 047470 362 -----------GLTFK-GISYFPESVYI-T---DAPLYYGKND-----------VNKSICH--LGSLNPDEVTGKVVFCD 412 (757)
Q Consensus 362 -----------~~~~~-g~~l~~~~~~~-~---~~p~~~~~~~-----------~~~~~c~--~~~~~~~~~~gkivl~~ 412 (757)
+.... .........+. . ...+...... .....|. ...+...++.+++.++.
T Consensus 201 pG~~i~st~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (435)
T d1v6ca_ 201 PGEAILSTVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVE 280 (435)
T ss_dssp ECSSEEEECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTEEEEEE
T ss_pred cccceeeeeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccccceee
Confidence 11000 00000000000 0 0000000000 0000011 11223445667777776
Q ss_pred CCCC----CchhHHHHHHHHcCCeEEEEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCc
Q 047470 413 NSNR----IDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTK 488 (757)
Q Consensus 413 ~g~~----~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 488 (757)
+... .....+.......++ .+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--------------------------------------------------- 308 (435)
T d1v6ca_ 281 RVGNQGSSYPEINSTKACKTAGA-KGIIV--------------------------------------------------- 308 (435)
T ss_dssp CCSCSSSSCTHHHHHHHHHHTTC-SEEEE---------------------------------------------------
T ss_pred ccCCccccceeeeeceeecccCC-cceEE---------------------------------------------------
Confidence 5431 234444555555555 33332
Q ss_pred CCCccccccCCCCCCC--CCCCCCceEEeCCCCeEecccCCC----CccccCCCccccceEeeccccchhhhHhHHHHHH
Q 047470 489 PAPHVASFSSRGPDPI--SPGILKPDIVAPGVDVLAAVAPNI----PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALL 562 (757)
Q Consensus 489 ~~~~~a~fSs~Gp~~~--~~~~lKPDI~APG~~I~sa~~~~~----~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 562 (757)
.+++.+|... .....||||.+||..|.++..... .............|..+||||||||||||++|||
T Consensus 309 ------~~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl 382 (435)
T d1v6ca_ 309 ------YSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLV 382 (435)
T ss_dssp ------ECCSSSCSCCCCEEECTTCCCCSCEEEECHHHHHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHH
T ss_pred ------eccCCCCCcCCccccccCCceEEEEEEeccccccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHH
Confidence 2333333321 124679999999988876532110 0000011122347999999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccCccccCCCCceecCCchhhHHhhhc
Q 047470 563 KAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHIDPNKAMDPGLIYDADFQDYVEFLCG 632 (757)
Q Consensus 563 ~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd~~~Al~~~lv~d~~~~dy~~~l~~ 632 (757)
+|++|+|+++|||++||+||+++. .+++++.||+|+||+.+|++ ||...|+
T Consensus 383 ~q~~P~~s~~~vk~~L~~TA~~~~--------~~~~~~~~G~G~vn~~~A~~-----------~l~~~~~ 433 (435)
T d1v6ca_ 383 WSYHPECSASQVRAALNATADDLS--------VAGRDNQTGYGMINAVAAKA-----------YLDESCT 433 (435)
T ss_dssp HHHCTTSCHHHHHHHHHHHSBCCS--------SSSCBTTTBTCBCCHHHHHH-----------HHHHCTT
T ss_pred HHHCCCCCHHHHHHHHHhhCcccC--------CCCCCCCcccceecHHHHHH-----------HHHhcCC
Confidence 999999999999999999999883 34578899999999999965 8888775
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=2.3e-47 Score=399.40 Aligned_cols=257 Identities=33% Similarity=0.422 Sum_probs=208.3
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|+++.+|+||+|||||||||++||+|.++ ++..++|.+.
T Consensus 21 ~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~~---------------------------~~~~~~~~~~----------- 62 (280)
T d1dbia_ 21 DYAWDVTKGSSGQEIAVIDTGVDYTHPDLDGK---------------------------VIKGYDFVDN----------- 62 (280)
T ss_dssp HHHTTTCCCCTTCEEEEEESCCCTTSTTTTTT---------------------------EEEEEETTTT-----------
T ss_pred HHHHhccCCCCCeEEEEEccCcCCCChhhcCC---------------------------eeecccccCC-----------
Confidence 45999999999999999999999999999742 3444444321
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|..+|||||||+|+|...+ ...+.||||+|+|+.+|+++ ..+ +...++++||+|++++|++
T Consensus 63 --~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~---~~~~~~~~~~~~ai~~a~~~g~~ 129 (280)
T d1dbia_ 63 --DYDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALD---RNGSGTLSDIADAIIYAADSGAE 129 (280)
T ss_dssp --BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCC---TTSCCCHHHHHHHHHHHHHTTCS
T ss_pred --CCccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeC---CCCCcCHHHHHHHHHHHHHcCCc
Confidence 123668899999999999987532 23357999999999999998 555 7889999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|||+|||... ..+....+...+.++|+++|+||||+| .....+...|++|+||+.+.
T Consensus 130 iin~S~g~~~---~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~------------------- 187 (280)
T d1dbia_ 130 VINLSLGCDC---HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQ------------------- 187 (280)
T ss_dssp EEEECCSSCC---CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECT-------------------
T ss_pred Eeeccccccc---cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecC-------------------
Confidence 9999999865 233445566688899999999999999 66677778889999987311
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 188 -------------------------------------------------------------------------------- 187 (280)
T d1dbia_ 188 -------------------------------------------------------------------------------- 187 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.++++.||++||.. |++|||++|++.....
T Consensus 188 -----------------------------------------~~~~a~~S~~g~~~--------d~~apg~~i~~~~~~~- 217 (280)
T d1dbia_ 188 -----------------------------------------YDRLASFSNYGTWV--------DVVAPGVDIVSTITGN- 217 (280)
T ss_dssp -----------------------------------------TSCBCTTBCCSTTC--------CEEEECSSEEEEETTT-
T ss_pred -----------------------------------------CCCcCCcCCCCCcc--------cccCCccceeccccCc-
Confidence 23678999999977 9999999999998765
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccC
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHID 608 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd 608 (757)
.|..++|||||||+|||++|||++. .+++.+||++|++||+++.. ++..||||+||
T Consensus 218 ------------~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~----------~~~~~G~G~ln 273 (280)
T d1dbia_ 218 ------------RYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISG----------TGTYFKYGRIN 273 (280)
T ss_dssp ------------EEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTT----------BTTTBSSEECC
T ss_pred ------------ceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCC----------CCCcCCCCeEc
Confidence 8999999999999999999999995 56899999999999987742 45589999999
Q ss_pred ccccCC
Q 047470 609 PNKAMD 614 (757)
Q Consensus 609 ~~~Al~ 614 (757)
+++||+
T Consensus 274 ~~~Al~ 279 (280)
T d1dbia_ 274 SYNAVT 279 (280)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 999986
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=1e-46 Score=393.88 Aligned_cols=255 Identities=32% Similarity=0.455 Sum_probs=209.7
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|+++++|+||+|||||||||++||+|+ +...++|..+
T Consensus 14 ~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-----------------------------~~~~~~~~~~----------- 53 (274)
T d1r0re_ 14 DKVQAQGFKGANVKVAVLDTGIQASHPDLN-----------------------------VVGGASFVAG----------- 53 (274)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCC-----------------------------EEEEEECSTT-----------
T ss_pred HHHHHcCCCCCCeEEEEECCCCCCCChhhc-----------------------------ccCCccccCC-----------
Confidence 348999999999999999999999999995 2233344321
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|.++|||||||||++.... ..+.|+||+|+|+.+|+++ ..+ +..++++++++++.+++++
T Consensus 54 --~~~~~d~~gHGT~vAgii~~~~~~---------~~~~gvap~a~i~~~~~~~---~~~~~~~~~i~~ai~~a~~~~~~ 119 (274)
T d1r0re_ 54 --EAYNTDGNGHGTHVAGTVAALDNT---------TGVLGVAPSVSLYAVKVLN---SSGSGSYSGIVSGIEWATTNGMD 119 (274)
T ss_dssp --CCTTCCSSSHHHHHHHHHHCCSSS---------SBCCCSSTTSEEEEEECSC---TTSEECHHHHHHHHHHHHHTTCS
T ss_pred --CCCCCCcccccccccccccccccc---------ccccccCCCcEEEEEEEeC---CCCCcCHHHHHHHHHHHHhcCCc
Confidence 123567789999999999987422 1247999999999999998 666 6788999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC----CCcccCCCceEEeccccccccceeeEEeCCCcE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP----RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLT 364 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~----~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~ 364 (757)
|+|+|||... ..........++.++++++|+||||++ .. ...+...+++|+||+.+.
T Consensus 120 i~n~S~~~~~---~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------------- 181 (274)
T d1r0re_ 120 VINMSLGGAS---GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDS--------------- 181 (274)
T ss_dssp EEEECEEBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECT---------------
T ss_pred eecccccccc---chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECC---------------
Confidence 9999999875 233444555688899999999999998 32 233455678888887321
Q ss_pred EEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCC
Q 047470 365 FKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDID 444 (757)
Q Consensus 365 ~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~ 444 (757)
T Consensus 182 -------------------------------------------------------------------------------- 181 (274)
T d1r0re_ 182 -------------------------------------------------------------------------------- 181 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecc
Q 047470 445 SDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAV 524 (757)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 524 (757)
.+.++.||++||.+ ||+|||++|+++.
T Consensus 182 ---------------------------------------------~~~~~~~s~~g~~~--------di~APG~~i~~~~ 208 (274)
T d1r0re_ 182 ---------------------------------------------NSNRASFSSVGAEL--------EVMAPGAGVYSTY 208 (274)
T ss_dssp ---------------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEE
T ss_pred ---------------------------------------------CCCcccccCCCCCE--------EEEecCCCccccc
Confidence 23578999999854 9999999999998
Q ss_pred cCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 047470 525 APNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGA 604 (757)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~ 604 (757)
+.+ .|..++|||||||+|||++|||+|++|+|++++||++|++||+++. ++..||+
T Consensus 209 ~~~-------------~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~-----------~~~~~G~ 264 (274)
T d1r0re_ 209 PTN-------------TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLG-----------SSFYYGK 264 (274)
T ss_dssp TTT-------------EEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCS-----------CHHHHTT
T ss_pred CCC-------------CeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----------CCCceEc
Confidence 776 8999999999999999999999999999999999999999998763 4568999
Q ss_pred CccCccccCC
Q 047470 605 GHIDPNKAMD 614 (757)
Q Consensus 605 G~vd~~~Al~ 614 (757)
|+||+.+|++
T Consensus 265 G~ln~~~A~~ 274 (274)
T d1r0re_ 265 GLINVEAAAQ 274 (274)
T ss_dssp CBCCHHHHTC
T ss_pred CeecHHHhcC
Confidence 9999999986
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=2.2e-46 Score=392.71 Aligned_cols=257 Identities=32% Similarity=0.484 Sum_probs=210.8
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|.++++|+||+|+|||||||++||+|.. ...+++...
T Consensus 14 ~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~~-----------------------------~~~~~~~~~----------- 53 (281)
T d1to2e_ 14 PALHSQGYTGSNVKVAVIDSGIDSSHPDLKV-----------------------------AGGASMVPS----------- 53 (281)
T ss_dssp HHHHHHTCSCTTCEEEEEESCCCTTCTTCCE-----------------------------EEEEECCTT-----------
T ss_pred HHHHHCCCCCCCeEEEEECCCCCCCChhhhh-----------------------------cCCccccCC-----------
Confidence 4589999999999999999999999999963 122223211
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
+.....+..+|||||||||+|.... ....|+||+|+|+.+|+++ ..+ +...++++||+|+++.+++
T Consensus 54 -~~~~~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~---~~~~~~~~~~~~ai~~a~~~~~~ 120 (281)
T d1to2e_ 54 -ETNPFQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLG---ADGSGQYSWIINGIEWAIANNMD 120 (281)
T ss_dssp -CCCTTCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSC---TTSEECHHHHHHHHHHHHHTTCS
T ss_pred -CCCCCcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeC---CCCCcCHHHHHHHHHHHHhcccc
Confidence 1112334578999999999987421 1247999999999999998 665 6788999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CC----CCcccCCCceEEeccccccccceeeEEeCCCcE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FP----RSIHNGAPWITTVGAGTLDRSFHATVTLDNGLT 364 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~----~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~ 364 (757)
|+|+|||... ....+..++..+.++|+++|+||||++ .. ...++..+++|+||+.+.
T Consensus 121 v~n~S~g~~~---~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~--------------- 182 (281)
T d1to2e_ 121 VINMSLGGPS---GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDS--------------- 182 (281)
T ss_dssp EEEECEEBSC---CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECT---------------
T ss_pred ccccccCCCc---chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecC---------------
Confidence 9999999864 345566677788999999999999998 32 223456678888887421
Q ss_pred EEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCC
Q 047470 365 FKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDID 444 (757)
Q Consensus 365 ~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~ 444 (757)
T Consensus 183 -------------------------------------------------------------------------------- 182 (281)
T d1to2e_ 183 -------------------------------------------------------------------------------- 182 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecc
Q 047470 445 SDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAV 524 (757)
Q Consensus 445 ~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 524 (757)
.+.++.||++||.. |++|||.+|+++.
T Consensus 183 ---------------------------------------------~~~~~~~S~~G~~~--------d~~apG~~i~s~~ 209 (281)
T d1to2e_ 183 ---------------------------------------------SNQRASFSSVGPEL--------DVMAPGVSIQSTL 209 (281)
T ss_dssp ---------------------------------------------TSCBCTTCCCSTTC--------CEEEECSSEEEEE
T ss_pred ---------------------------------------------CCCCCcccCCCCCc--------cccCCCCCceeec
Confidence 23578999999987 9999999999998
Q ss_pred cCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCC
Q 047470 525 APNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGA 604 (757)
Q Consensus 525 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~ 604 (757)
+++ .|..++|||||||+|||++|||+|++|.|++++||++|++||+++. ++..||+
T Consensus 210 ~~~-------------~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~-----------~~~~~G~ 265 (281)
T d1to2e_ 210 PGN-------------KYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLG-----------DSFYYGK 265 (281)
T ss_dssp TTT-------------EEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCS-----------CHHHHTT
T ss_pred CCC-------------eeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----------CCCCccc
Confidence 876 8899999999999999999999999999999999999999999874 3447999
Q ss_pred CccCccccCCC
Q 047470 605 GHIDPNKAMDP 615 (757)
Q Consensus 605 G~vd~~~Al~~ 615 (757)
|+||+.+|++.
T Consensus 266 G~ld~~~A~~~ 276 (281)
T d1to2e_ 266 GLINVQAAAQH 276 (281)
T ss_dssp CBCCHHHHTSS
T ss_pred CcccHHHHHhh
Confidence 99999999993
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=5.3e-46 Score=387.17 Aligned_cols=254 Identities=34% Similarity=0.450 Sum_probs=212.3
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|.++++|+||+|+||||||+ +||+|.. ...++|.++
T Consensus 14 ~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~~-----------------------------~~~~~~~~~----------- 52 (269)
T d1gcia_ 14 PAAHNRGLTGSGVKVAVLDTGIS-THPDLNI-----------------------------RGGASFVPG----------- 52 (269)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCC-CCTTCCE-----------------------------EEEEECSTT-----------
T ss_pred HHHHhCCCCCCCeEEEEECCCCC-CCcccCc-----------------------------cccccccCC-----------
Confidence 35999999999999999999998 8999962 122333221
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|.++|||||||||++... .....|+||+|+|+.+|++. ..+ .....+.++++++..++++
T Consensus 53 --~~~~~d~~~HGT~vAgii~~~~~---------~~~~~giap~a~i~~~~v~~---~~~~~~~~~~~~ai~~~~~~~~~ 118 (269)
T d1gcia_ 53 --EPSTQDGNGHGTHVAGTIAALNN---------SIGVLGVAPSAELYAVKVLG---ASGSGSVSSIAQGLEWAGNNGMH 118 (269)
T ss_dssp --CCSCSCSSSHHHHHHHHHHCCCS---------SSBCCCSSTTCEEEEEECBC---TTSCBCHHHHHHHHHHHHHTTCS
T ss_pred --CCCccccchhhheecccccccCC---------CccccccCCceEEEEEEEec---CCCCccHHHHHHHHHHHHhcccc
Confidence 12356788999999999998742 22346999999999999998 555 6778899999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
+||+|||... .......+...+.++|+++|+||||+| +...+++..|++|+||+...
T Consensus 119 ~in~s~g~~~---~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~------------------- 176 (269)
T d1gcia_ 119 VANLSLGSPS---PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQ------------------- 176 (269)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECT-------------------
T ss_pred cccccccccc---ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEcc-------------------
Confidence 9999999864 223445556688999999999999999 77777888899999997421
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 177 -------------------------------------------------------------------------------- 176 (269)
T d1gcia_ 177 -------------------------------------------------------------------------------- 176 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++||.. ||+|||.++.++.+..
T Consensus 177 -----------------------------------------~~~~~~~S~~G~~~--------di~Apg~~~~~~~~~~- 206 (269)
T d1gcia_ 177 -----------------------------------------NNNRASFSQYGAGL--------DIVAPGVNVQSTYPGS- 206 (269)
T ss_dssp -----------------------------------------TSCBCTTCCCSTTE--------EEEEECSSEEEEETTT-
T ss_pred -----------------------------------------CCCcccccCCCCCc--------eEEEeeecceeccCCC-
Confidence 23578999999976 9999999999988776
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccC
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHID 608 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd 608 (757)
.|..++|||||||+|||++|||+|++|++++++||++|++||+++. .+..||||+||
T Consensus 207 ------------~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g-----------~~~~~G~G~ln 263 (269)
T d1gcia_ 207 ------------TYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLG-----------STNLYGSGLVN 263 (269)
T ss_dssp ------------EEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCS-----------CHHHHTTCBCC
T ss_pred ------------ceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCC-----------CCCCcccCeEc
Confidence 8999999999999999999999999999999999999999998773 34579999999
Q ss_pred ccccCC
Q 047470 609 PNKAMD 614 (757)
Q Consensus 609 ~~~Al~ 614 (757)
+++|++
T Consensus 264 ~~~Avk 269 (269)
T d1gcia_ 264 AEAATR 269 (269)
T ss_dssp HHHHTC
T ss_pred HHHhcC
Confidence 999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=7.2e-46 Score=388.41 Aligned_cols=256 Identities=33% Similarity=0.421 Sum_probs=214.7
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|+.+ +|+||+|+|||||||++||+|.+ +++..++|.++
T Consensus 21 ~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~---------------------------~~~~~~~~~~~----------- 61 (279)
T d1thma_ 21 PQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG---------------------------KVVGGWDFVDN----------- 61 (279)
T ss_dssp HHHHTTC-CCTTCEEEEEESCCCTTCTTTTT---------------------------TEEEEEETTTT-----------
T ss_pred HHHHhcc-CCCCcEEEEEcCCCCCCChhhcC---------------------------Ceecccccccc-----------
Confidence 4589887 99999999999999999999974 24445555432
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhCCCc
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIADGVD 289 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~g~d 289 (757)
...+.|..+|||||||+|++...+ ...+.|+||+|+|+.+|++. ..+ +...+++++|+++.+.+++
T Consensus 62 --~~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~---~~~~~~~~~~~~ai~~~~~~~~~ 128 (279)
T d1thma_ 62 --DSTPQNGNGHGTHCAGIAAAVTNN--------STGIAGTAPKASILAVRVLD---NSGSGTWTAVANGITYAADQGAK 128 (279)
T ss_dssp --BSCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSTTCEEEEEECSC---TTSCCCHHHHHHHHHHHHHTTCS
T ss_pred --CcccccccccccccceeeeeccCC--------CccccccCCcceEEEEEEEe---cCCCCcHHHHHHHHHHHhhcCCc
Confidence 123667899999999999987532 23357999999999999998 555 7888999999999999999
Q ss_pred EEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcccCCCceEEeccccccccceeeEEeCCCcEEEEE
Q 047470 290 IMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTFKGI 368 (757)
Q Consensus 290 VIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~~g~ 368 (757)
|+|+|||... .......+...+.++|+++|+|+||+| .....+...|++++|||.+.
T Consensus 129 i~n~S~G~~~---~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~------------------- 186 (279)
T d1thma_ 129 VISLSLGGTV---GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQ------------------- 186 (279)
T ss_dssp EEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECT-------------------
T ss_pred eeccccCccc---cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccC-------------------
Confidence 9999999865 334455566688899999999999999 77777778889999987421
Q ss_pred eecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCCCCc
Q 047470 369 SYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDSDEY 448 (757)
Q Consensus 369 ~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~~~~ 448 (757)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d1thma_ 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEecccCCC
Q 047470 449 YIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVAPNI 528 (757)
Q Consensus 449 ~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~ 528 (757)
.+.++.||++|++. ||+|||.+|+++.+.+
T Consensus 187 -----------------------------------------~~~~~~~S~~G~~~--------di~Apg~~i~~~~~~~- 216 (279)
T d1thma_ 187 -----------------------------------------NDNKSSFSTYGSWV--------DVAAPGSSIYSTYPTS- 216 (279)
T ss_dssp -----------------------------------------TSCBCTTCCCCTTC--------CEEEECSSEEEEETTT-
T ss_pred -----------------------------------------CCCCccccCCCceE--------EEeeeeeccccccCcc-
Confidence 23678999999987 9999999999998876
Q ss_pred CccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCCccC
Q 047470 529 PFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAGHID 608 (757)
Q Consensus 529 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G~vd 608 (757)
.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++.. .+..||+|+||
T Consensus 217 ------------~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g----------~~~~~G~G~vn 272 (279)
T d1thma_ 217 ------------TYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISG----------TGTYWAKGRVN 272 (279)
T ss_dssp ------------EEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTT----------BTTTBSSEECC
T ss_pred ------------cccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCC----------CCCcceeeeEc
Confidence 899999999999999999999999665 799999999999988742 45689999999
Q ss_pred ccccCC
Q 047470 609 PNKAMD 614 (757)
Q Consensus 609 ~~~Al~ 614 (757)
+.+||+
T Consensus 273 ~~~Av~ 278 (279)
T d1thma_ 273 AYKAVQ 278 (279)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999975
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2.7e-42 Score=366.42 Aligned_cols=285 Identities=27% Similarity=0.310 Sum_probs=212.7
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
+.+|..+++|+||+|+|||||||++||+|.++ +...++|.....
T Consensus 16 ~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~---------------------------~~~~~~~~~~~~--------- 59 (309)
T d2ixta1 16 NDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN---------------------------VEQCKDFTGATT--------- 59 (309)
T ss_dssp CTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT---------------------------EEEEEESSSSSS---------
T ss_pred hhhhccCCCCCCeEEEEEccCCCCCChhHhcc---------------------------ccccccccCCCC---------
Confidence 56999999999999999999999999999742 334444433211
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC---
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD--- 286 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~--- 286 (757)
.......|..+|||||||||+|...++ ...+.||||+|+|+.++++. ..+ +..++++.+++++++.
T Consensus 60 ~~~~~~~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~---~~~~~~~~~~~~~~~~a~~~~~~ 129 (309)
T d2ixta1 60 PINNSCTDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLL---DSGSGYSDDIAAAIRHAADQATA 129 (309)
T ss_dssp CEETCCCCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSC---TTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccccccccccccccccccccc-------chhhhhhhhhccceeeeeec---CCCCccccccccccccccccccc
Confidence 111345678899999999999875322 22347999999999999988 555 7888899999998875
Q ss_pred --CCcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC--cccCCCceEEeccccccccceeeEEeCC
Q 047470 287 --GVDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS--IHNGAPWITTVGAGTLDRSFHATVTLDN 361 (757)
Q Consensus 287 --g~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~--~~~~ap~~itVgas~~~~~~~~~~~~~~ 361 (757)
...|+|+||+... .......+...+.++|+++|+||||++ .... .++..+++++|++...........
T Consensus 130 ~~~~~v~~~s~~~~~---~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~~~---- 202 (309)
T d2ixta1 130 TGTKTIISMSLGSSA---NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGTYR---- 202 (309)
T ss_dssp HTCCEEEEECCCBSS---CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTEEE----
T ss_pred ccccccccccccccc---cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccccc----
Confidence 3468999999864 233445556688899999999999999 4433 344557777777642211100000
Q ss_pred CcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCC
Q 047470 362 GLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTP 441 (757)
Q Consensus 362 ~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~ 441 (757)
T Consensus 203 -------------------------------------------------------------------------------- 202 (309)
T d2ixta1 203 -------------------------------------------------------------------------------- 202 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeE
Q 047470 442 DIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVL 521 (757)
Q Consensus 442 ~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~ 521 (757)
.........++++|+.. ....||||+|||.+++
T Consensus 203 ---------------------------------------------~~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~ 235 (309)
T d2ixta1 203 ---------------------------------------------VADYSSRGYISTAGDYV--IQEGDIEISAPGSSVY 235 (309)
T ss_dssp ---------------------------------------------ECTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEE
T ss_pred ---------------------------------------------ccccccccccccccccc--cCCCcceeecCCCcee
Confidence 00111345567777766 3568999999999999
Q ss_pred ecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCC
Q 047470 522 AAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLD 601 (757)
Q Consensus 522 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~ 601 (757)
++.+.. .|..++|||||||+|||++|||+|++|+|++.|||++|++||++++..+.. ......++.
T Consensus 236 s~~~~~-------------~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~-g~~~~~~~~ 301 (309)
T d2ixta1 236 STWYNG-------------GYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGY-GAAIGDDYA 301 (309)
T ss_dssp EECTTS-------------SEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBST-TCCSSSBTT
T ss_pred eecCCC-------------cceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCc-CCccCCCcc
Confidence 998776 899999999999999999999999999999999999999999988654321 134556788
Q ss_pred CCCCccCc
Q 047470 602 FGAGHIDP 609 (757)
Q Consensus 602 ~G~G~vd~ 609 (757)
+|||++|+
T Consensus 302 ~g~G~~~v 309 (309)
T d2ixta1 302 SGFGFARV 309 (309)
T ss_dssp TBTCBCCC
T ss_pred cCCCEecC
Confidence 99999874
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=9.6e-42 Score=356.76 Aligned_cols=236 Identities=32% Similarity=0.395 Sum_probs=190.1
Q ss_pred CCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCCC
Q 047470 136 SARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFDS 215 (757)
Q Consensus 136 ~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~~ 215 (757)
...+|+||+|+|||||||++||+|.++ +...+.+. ..
T Consensus 26 ~~~tG~Gv~VaViDsGid~~Hpdf~g~---------------------------~~~~~~~~----------------~~ 62 (279)
T d2pwaa1 26 DESAGQGSCVYVIDTGIEASHPEFEGR---------------------------AQMVKTYY----------------YS 62 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC---------------------------EEEEEESS----------------SC
T ss_pred cCCCCCCeEEEEECcCCCCCChhhcCC---------------------------ceeccCCC----------------CC
Confidence 355999999999999999999999752 11111110 12
Q ss_pred CCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHhC-------C
Q 047470 216 ARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIAD-------G 287 (757)
Q Consensus 216 ~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~~-------g 287 (757)
+.|.++|||||||||+|+. .|+||+|+|+.+|++. ... ...+++..+++++... +
T Consensus 63 ~~d~~gHGT~VAgiia~~~--------------~G~a~~a~l~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (279)
T d2pwaa1 63 SRDGNGHGTHCAGTVGSRT--------------YGVAKKTQLFGVKVLD---DNGSGQYSTIIAGMDFVASDKNNRNCPK 125 (279)
T ss_dssp SSCSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSC---TTSCCCHHHHHHHHHHHHHHGGGSCCTT
T ss_pred cccccCccccccccccccc--------------cccCCCccccceeeec---CCcccccccccchhheeccccccccccc
Confidence 4577899999999999863 5999999999999988 444 6788888999988764 3
Q ss_pred CcEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-C-CCCcccCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 288 VDIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-F-PRSIHNGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 288 ~dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~-~~~~~~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
++|+|+|||... .+.+..++..+.++|+++|+||||++ . ....+...|++|+|||...
T Consensus 126 ~~i~n~s~g~~~----~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~---------------- 185 (279)
T d2pwaa1 126 GVVASLSLGGGY----SSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDR---------------- 185 (279)
T ss_dssp EEEEEECCCEEC----CHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECT----------------
T ss_pred ccceeccCCCcc----ccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEee----------------
Confidence 459999999753 34566666788899999999999999 4 3345566788888887421
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
T Consensus 186 -------------------------------------------------------------------------------- 185 (279)
T d2pwaa1 186 -------------------------------------------------------------------------------- 185 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
.+.++.||++||.. ||+|||.+|+++.+
T Consensus 186 --------------------------------------------~g~~~~~S~~G~~~--------dv~APG~~i~s~~~ 213 (279)
T d2pwaa1 186 --------------------------------------------YDRRSSFSNYGSVL--------DIFGPGTDILSTWI 213 (279)
T ss_dssp --------------------------------------------TSBBCTTCCBSTTC--------CEEEECSSEEEEET
T ss_pred --------------------------------------------cCCCccccCCCCcc--------cccccccccccccc
Confidence 23678999999986 99999999999988
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccccCCCCCCCCCCC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIGVVPATPLDFGAG 605 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~~~G~G 605 (757)
.+ .|..++|||||||+|||++|||+|++|.++++++|. |++||++. .....|+|
T Consensus 214 ~~-------------~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~------------~~~~~g~g 267 (279)
T d2pwaa1 214 GG-------------STRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKG------------DLSNIPFG 267 (279)
T ss_dssp TT-------------EEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEES------------CCBSCCTT
T ss_pred CC-------------cccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCC------------CCCCCCCC
Confidence 76 899999999999999999999999999999877775 77888764 34478999
Q ss_pred ccCc
Q 047470 606 HIDP 609 (757)
Q Consensus 606 ~vd~ 609 (757)
++|+
T Consensus 268 ~~n~ 271 (279)
T d2pwaa1 268 TVNL 271 (279)
T ss_dssp SCCE
T ss_pred Chhh
Confidence 9986
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=6.3e-40 Score=349.51 Aligned_cols=293 Identities=28% Similarity=0.368 Sum_probs=214.8
Q ss_pred CCCC-CCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcC
Q 047470 133 LWPS-ARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEY 211 (757)
Q Consensus 133 ~~~~-~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~ 211 (757)
+|.. |++|+||+|||||||||++||+|.... + ...++...+.+..
T Consensus 13 ~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~----------------~-----~~~~~~~~~~~~~------------- 58 (318)
T d1wmda2 13 AQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE----------------A-----FRGKITALYALGR------------- 58 (318)
T ss_dssp HHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT----------------T-----TTTCEEEEEETTT-------------
T ss_pred HHHccCccccCeEEEEEcCCcCCCCcccccCc----------------c-----cCCcEEeecCCCC-------------
Confidence 6664 999999999999999999999997421 0 1223433333321
Q ss_pred CCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC---CCHHHHHHHHHHHHhCCC
Q 047470 212 DFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE---SAASDVLAGMDQAIADGV 288 (757)
Q Consensus 212 ~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g---~~~~~i~~ai~~a~~~g~ 288 (757)
..+..|..||||||||||+|+... ..||||+|+|+.+|+++ ..+ .....+..+++++...++
T Consensus 59 -~~~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~---~~~~~~~~~~~~~~~~~~~~~~~~ 123 (318)
T d1wmda2 59 -TNNANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMD---SGGGLGGLPSNLQTLFSQAYSAGA 123 (318)
T ss_dssp -TTCCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCC---TTSSCTTSCSSHHHHHHHHHHTTC
T ss_pred -CCCCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeee---ecccccccchhhHHHHHHHHhcCC
Confidence 123567899999999999987321 26999999999999998 443 345567889999999999
Q ss_pred cEEEeCCCCCCCCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCCcc--cCCCceEEeccccccccceeeEEeCCCcEE
Q 047470 289 DIMSLSLGFDQTPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRSIH--NGAPWITTVGAGTLDRSFHATVTLDNGLTF 365 (757)
Q Consensus 289 dVIn~SlG~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~--~~ap~~itVgas~~~~~~~~~~~~~~~~~~ 365 (757)
+|+|+|||.............+...+.++++++|+|+||.+ +..... ...++++++.+........
T Consensus 124 ~i~~~S~g~~~~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~----------- 192 (318)
T d1wmda2 124 RIHTNSWGAAVNGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF----------- 192 (318)
T ss_dssp SEEEECCCBCCTTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG-----------
T ss_pred ceeecccccccccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCccccc-----------
Confidence 99999999876444445555566677799999999999999 544433 3345566555432111000
Q ss_pred EEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCCCCC
Q 047470 366 KGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPDIDS 445 (757)
Q Consensus 366 ~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~~~~ 445 (757)
+.
T Consensus 193 ----------------------------------------------------------------~~-------------- 194 (318)
T d1wmda2 193 ----------------------------------------------------------------GS-------------- 194 (318)
T ss_dssp ----------------------------------------------------------------CG--------------
T ss_pred ----------------------------------------------------------------cc--------------
Confidence 00
Q ss_pred CCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCCeEeccc
Q 047470 446 DEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVDVLAAVA 525 (757)
Q Consensus 446 ~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~ 525 (757)
.......+..+|++||.. ....|||++|||.+|+++..
T Consensus 195 ----------------------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~ 232 (318)
T d1wmda2 195 ----------------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARS 232 (318)
T ss_dssp ----------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECC
T ss_pred ----------------------------------------ccccccccccccccCCCc--CCCcccceeecCceEEeccc
Confidence 001123567899999987 46789999999999999877
Q ss_pred CCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCC-----CCCHHHHHHHHHhcccccCCCCCccccCCCCCC
Q 047470 526 PNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHR-----DWSPAAIRSAIMTTAYPVNFAENEIGVVPATPL 600 (757)
Q Consensus 526 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-----~~s~~~ik~~L~~TA~~~~~~~~~~~~~~~~~~ 600 (757)
....... ........|..++|||||||+|||++|||+|++| .+++.+||++|++||++.. ...++.
T Consensus 233 ~~~~~~~-~~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~--------~~~~~~ 303 (318)
T d1wmda2 233 SLAPDSS-FWANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIG--------LGYPNG 303 (318)
T ss_dssp TTCCGGG-SSEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCS--------SCSSCT
T ss_pred cccccCc-cccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCC--------CCCCCC
Confidence 6533211 1112234788899999999999999999999754 6889999999999999874 344677
Q ss_pred CCCCCccCccccCC
Q 047470 601 DFGAGHIDPNKAMD 614 (757)
Q Consensus 601 ~~G~G~vd~~~Al~ 614 (757)
.||||+||+.+||+
T Consensus 304 ~~G~G~ld~~~Al~ 317 (318)
T d1wmda2 304 NQGWGRVTLDKSLN 317 (318)
T ss_dssp TTTTCBCCHHHHHT
T ss_pred CeeeceecHHHHhC
Confidence 99999999999987
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=9e-38 Score=335.01 Aligned_cols=279 Identities=19% Similarity=0.253 Sum_probs=188.8
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeecc-chhhhccCCCCC
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFS-KGLQAAGINVSK 209 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~-~~~~~~~~~~~~ 209 (757)
+.+|..+.+|+||+|||||||||++||+|.++-. ..+.|. .+.. ..
T Consensus 27 ~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~~---------------------------~~~~~~~~~~~------~~ 73 (334)
T d1p8ja2 27 KEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD---------------------------PGASFDVNDQD------PD 73 (334)
T ss_dssp HHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC---------------------------GGGCEETTTTB------SC
T ss_pred HHHHhcCCCCCCeEEEEEccCCCCCChhHhhccc---------------------------cCCCccccCCC------Cc
Confidence 3589999999999999999999999999985310 001111 0000 01
Q ss_pred cCCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHh-CCC
Q 047470 210 EYDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIA-DGV 288 (757)
Q Consensus 210 ~~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~-~g~ 288 (757)
..+.....|..+|||||||||+|...++. ...|+||+++++.+|++. ....+.+.++.++++ +++
T Consensus 74 ~~~~~~~~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 139 (334)
T d1p8ja2 74 PQPRYTQMNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLD------GEVTDAVEARSLGLNPNHI 139 (334)
T ss_dssp CCCCCCTTCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSS------SCCCHHHHHHHHTSCTTTC
T ss_pred cccccccccCccchhhhhhhhhhcccccc--------ccccccccccccchhhcc------ccccchHHHHHHHhhhcCC
Confidence 12223355789999999999998854322 236999999999999876 334566677777775 689
Q ss_pred cEEEeCCCCCC-CCCcc--------CHHHHHHHHHHhCCcEEEEecCCCC-CCCCccc----CCCceEEeccccccccce
Q 047470 289 DIMSLSLGFDQ-TPYFN--------DVIAIASLSAIENGIVVVCAAGNDG-FPRSIHN----GAPWITTVGAGTLDRSFH 354 (757)
Q Consensus 289 dVIn~SlG~~~-~~~~~--------~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~~~----~ap~~itVgas~~~~~~~ 354 (757)
+++|+|||... ..... ..+..+...+..+|+++|+||||++ ....... ..+.+++|++.+
T Consensus 140 ~~~n~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~------ 213 (334)
T d1p8ja2 140 HIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSAT------ 213 (334)
T ss_dssp CEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEEC------
T ss_pred cEEeCCCCCCCcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCccccccccccccccccc------
Confidence 99999999865 11111 1222334455689999999999988 4322211 122333333321
Q ss_pred eeEEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEE
Q 047470 355 ATVTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAA 434 (757)
Q Consensus 355 ~~~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g 434 (757)
T Consensus 214 -------------------------------------------------------------------------------- 213 (334)
T d1p8ja2 214 -------------------------------------------------------------------------------- 213 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEE
Q 047470 435 IFLTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIV 514 (757)
Q Consensus 435 ~i~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~ 514 (757)
..+..+.||++|+... .+..
T Consensus 214 ------------------------------------------------------~~g~~~~~s~~~~~~~------~~~~ 233 (334)
T d1p8ja2 214 ------------------------------------------------------QFGNVPWYSEACSSTL------ATTY 233 (334)
T ss_dssp ------------------------------------------------------TTSCCCTTCCBCTTCC------EEEE
T ss_pred ------------------------------------------------------cCCceeeecccCCccc------cccc
Confidence 1234566777776651 2455
Q ss_pred eCCCC-----eEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCC
Q 047470 515 APGVD-----VLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAE 589 (757)
Q Consensus 515 APG~~-----I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~ 589 (757)
+||.. +.+.... ..|..++|||||||+|||++|||+|++|+|++.|||++|++||++.....
T Consensus 234 ~~~~~~~~~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~ 300 (334)
T d1p8ja2 234 SSGNQNEKQIVTTDLRQ-------------KCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA 300 (334)
T ss_dssp CCCSTTSCCEEEEETTT-------------EEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCC
T ss_pred cccccccccccccccCC-------------ccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCC
Confidence 55533 2222211 27889999999999999999999999999999999999999999876443
Q ss_pred Cccc---cCCCCCCCCCCCccCccccCCC
Q 047470 590 NEIG---VVPATPLDFGAGHIDPNKAMDP 615 (757)
Q Consensus 590 ~~~~---~~~~~~~~~G~G~vd~~~Al~~ 615 (757)
..+. .....+..||||+||+.+||+.
T Consensus 301 ~~~~~~~~~~~~~~~~G~G~lna~~Av~~ 329 (334)
T d1p8ja2 301 DDWATNGVGRKVSHSYGYGLLDAGAMVAL 329 (334)
T ss_dssp SCCEECTTSCEEBTTTBTCBCCHHHHHHH
T ss_pred ccccccCCCcccCCCCcceEeCHHHHHHH
Confidence 3221 1223456899999999999873
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.3e-37 Score=334.58 Aligned_cols=281 Identities=20% Similarity=0.195 Sum_probs=197.1
Q ss_pred CCCCCCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCc
Q 047470 131 SGLWPSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKE 210 (757)
Q Consensus 131 ~~~~~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~ 210 (757)
..+|.++++|+||+|+|||||||++||+|.++-.. .+.++|.+..
T Consensus 36 ~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~-------------------------~~~~~~~~~~---------- 80 (339)
T d2id4a2 36 LDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA-------------------------EGSWDFNDNT---------- 80 (339)
T ss_dssp HHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG-------------------------GGCEETTTTB----------
T ss_pred HHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc-------------------------ccccccccCC----------
Confidence 35899999999999999999999999999853110 0122332210
Q ss_pred CCCCCCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHHhCCCcE
Q 047470 211 YDFDSARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAIADGVDI 290 (757)
Q Consensus 211 ~~~~~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~~~g~dV 290 (757)
.......+..+|||||||+|+|....+. .+.|+||+|+|+.++++. ......++..++.++++. .+|
T Consensus 81 ~~~~~~~~~~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~v 147 (339)
T d2id4a2 81 NLPKPRLSDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILS----GDITTEDEAASLIYGLDV-NDI 147 (339)
T ss_dssp SCCCCCSTTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTT----SCCCHHHHHHHTTTTTTT-CSE
T ss_pred CccCCCcccccccceeeecccccccccc--------cccccccccccceEEEee----ccccchHHHHHHHHHHhh-CCE
Confidence 1112345678999999999998753322 246999999999999875 236677788888887765 499
Q ss_pred EEeCCCCCCC-CCc---c----C-HHHHHHHHHHhCCcEEEEecCCCC-CCCCc--cc--CCCceEEeccccccccceee
Q 047470 291 MSLSLGFDQT-PYF---N----D-VIAIASLSAIENGIVVVCAAGNDG-FPRSI--HN--GAPWITTVGAGTLDRSFHAT 356 (757)
Q Consensus 291 In~SlG~~~~-~~~---~----~-~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~~--~~--~ap~~itVgas~~~~~~~~~ 356 (757)
+|+|||.... ... . . ....+...+..+|+++|+||||++ ..... +. ..+.+++|++.
T Consensus 148 ~~~s~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~--------- 218 (339)
T d2id4a2 148 YSCSWGPADDGRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAI--------- 218 (339)
T ss_dssp EEECEESCCSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEE---------
T ss_pred EeccCCCCCCcccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCccccccccccccccccccc---------
Confidence 9999997541 111 1 1 222334455679999999999988 33221 11 11223333221
Q ss_pred EEeCCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEE
Q 047470 357 VTLDNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIF 436 (757)
Q Consensus 357 ~~~~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i 436 (757)
T Consensus 219 -------------------------------------------------------------------------------- 218 (339)
T d2id4a2 219 -------------------------------------------------------------------------------- 218 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeC
Q 047470 437 LTDTPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAP 516 (757)
Q Consensus 437 ~~~~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~AP 516 (757)
...+..+.||++|+.. ...++..+|
T Consensus 219 ---------------------------------------------------~~~g~~~~~s~~~~~~----~~~~~~~~~ 243 (339)
T d2id4a2 219 ---------------------------------------------------DHKDLHPPYSEGCSAV----MAVTYSSGS 243 (339)
T ss_dssp ---------------------------------------------------CTTSCCCTTCCCCTTE----EEEEECSBT
T ss_pred ---------------------------------------------------cccccccccccccCcc----ceeeeeecc
Confidence 1123556777777764 344577788
Q ss_pred CCCeEecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCCCCHHHHHHHHHhcccccCCCCCccc---
Q 047470 517 GVDVLAAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRDWSPAAIRSAIMTTAYPVNFAENEIG--- 593 (757)
Q Consensus 517 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~ik~~L~~TA~~~~~~~~~~~--- 593 (757)
|..+.++...+ ..|..++|||||||||||++|||+|++|+|++.|||.+|++||+.+........
T Consensus 244 g~~~~s~~~~~------------~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~ 311 (339)
T d2id4a2 244 GEYIHSSDING------------RCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDS 311 (339)
T ss_dssp TBCEEEECSTT------------CEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEEC
T ss_pred ccccceeccCC------------CccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCcccccc
Confidence 99998876554 268899999999999999999999999999999999999999998764322111
Q ss_pred -cCCCCCCCCCCCccCccccCCC
Q 047470 594 -VVPATPLDFGAGHIDPNKAMDP 615 (757)
Q Consensus 594 -~~~~~~~~~G~G~vd~~~Al~~ 615 (757)
.....+..||||+||+.+||+.
T Consensus 312 ~~~~~~~~~~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 312 AMGKKYSHRYGFGKIDAHKLIEM 334 (339)
T ss_dssp SSSSEEBTTTBTCBCCHHHHHHH
T ss_pred CCCCCcCCCccchhhCHHHHHHH
Confidence 2233466799999999999984
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.95 E-value=4.8e-30 Score=276.70 Aligned_cols=309 Identities=19% Similarity=0.178 Sum_probs=181.6
Q ss_pred CCCCCCCccEEEEEecCCccCCccccCCCCCCCCccccccccCCCCCCCcccCceeeeeeeccchhhhccCCCCCcCCCC
Q 047470 135 PSARYGQGVIIGIIDTGIWPESESFHDKGMPPVPRRWNGRCENGTAFSPFVCNRKLIGARSFSKGLQAAGINVSKEYDFD 214 (757)
Q Consensus 135 ~~~~~G~Gv~VgVIDtGid~~Hp~f~~~~~~~~~~~~~g~~~~g~~f~~~~~~~kv~g~~~~~~~~~~~~~~~~~~~~~~ 214 (757)
..+++|+||+|||||||||++||+|.+. |+. +.. . ....
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~-------~~~-----------------~---------~~~~ 56 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FAS-------LGV-----------------S---------APQV 56 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHH-------TTC-----------------C---------CCCE
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhh-------cCC-----------------C---------CCCC
Confidence 3589999999999999999999999731 100 000 0 0001
Q ss_pred CCCCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCCCCHHHHHHHHHHHH---hCCCcEE
Q 047470 215 SARDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEESAASDVLAGMDQAI---ADGVDIM 291 (757)
Q Consensus 215 ~~~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g~~~~~i~~ai~~a~---~~g~dVI 291 (757)
...+.++|+|||+|++++...... .....+.||||+|+|+.+|+.. . ...++.++++++ +++++||
T Consensus 57 ~~~~~~g~~~~~~g~~~~~~~~~~----~d~~~~~GvAp~A~i~~~~~~~---~----~~~~~~~i~~~~~~~~~~~~Vi 125 (357)
T d1t1ga_ 57 VSVSVDGATNQPTGDPNGPDGEVE----LDIEVAGALAPGAKIAVYFAPN---T----DAGFLNAITTAVHDPTHKPSIV 125 (357)
T ss_dssp EEEESTTCCCCCCSCTTSTHHHHH----HHHHHHHHHSTTSEEEEEECCS---S----HHHHHHHHHHHHHCTTTCCSEE
T ss_pred ceeCCCCCCCCCCCcccccccccc----CCcccceeecccCeEEEEeccc---C----CCchHHHHHHHHHhhhcCCeEE
Confidence 123456777777777665421100 0112357999999999999976 3 233445555544 5689999
Q ss_pred EeCCCCCCC---CCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC--------cccCCCceEEeccccccccceeeEEe
Q 047470 292 SLSLGFDQT---PYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS--------IHNGAPWITTVGAGTLDRSFHATVTL 359 (757)
Q Consensus 292 n~SlG~~~~---~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~--------~~~~ap~~itVgas~~~~~~~~~~~~ 359 (757)
|+|||.... ......+......+..+|+++|+|+||+| .... .....+++++|++..........
T Consensus 126 n~S~G~~~~~~~~~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--- 202 (357)
T d1t1ga_ 126 SISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVASAGRI--- 202 (357)
T ss_dssp EECCCEEGGGSCHHHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEECSSCE---
T ss_pred ecccccCcCccccchHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCCCCcc---
Confidence 999998641 11233455666677789999999999998 3221 12345677787764322110000
Q ss_pred CCCcEEEEEeecCCCCCCceeeeEEccCCCCcccccCCCCCCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEecc
Q 047470 360 DNGLTFKGISYFPESVYITDAPLYYGKNDVNKSICHLGSLNPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTD 439 (757)
Q Consensus 360 ~~~~~~~g~~l~~~~~~~~~~p~~~~~~~~~~~~c~~~~~~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~ 439 (757)
....... . . .......|+ .-..
T Consensus 203 ------~~~~~~~--------------~--------------------------------~--~~~~~~~~g---~s~~- 224 (357)
T d1t1ga_ 203 ------ERETVWN--------------D--------------------------------G--PDGGSTGGG---VSRI- 224 (357)
T ss_dssp ------EEEEECB--------------C--------------------------------H--HHHCBCCCE---ECSS-
T ss_pred ------ccceecc--------------c--------------------------------c--cccccccCC---cccc-
Confidence 0000000 0 0 000000000 0000
Q ss_pred CCCCCCCCccccEEEechhhHHHHHHHHhcCCCCceEEEEeeeeeccCcCCCccccccCCCCCCCCCCCCCceEEeCCCC
Q 047470 440 TPDIDSDEYYIPSLILPTSAGTSIRQYVTGKNKSKVKSMRFILTELGTKPAPHVASFSSRGPDPISPGILKPDIVAPGVD 519 (757)
Q Consensus 440 ~~~~~~~~~~~p~~~i~~~~g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~fSs~Gp~~~~~~~lKPDI~APG~~ 519 (757)
+ ............+++.+++. .++.|||+.+++..
T Consensus 225 ----------------------------------------~---~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~ 259 (357)
T d1t1ga_ 225 ----------------------------------------F---PLPSWQERANVPPSANPGAG--SGRGVPDVAGNADP 259 (357)
T ss_dssp ----------------------------------------S---CCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCT
T ss_pred ----------------------------------------c---ccCcccccccccccccCCCC--CCceecceecccCC
Confidence 0 00001123456677777776 58999999999766
Q ss_pred eE--ecccCCCCccccCCCccccceEeeccccchhhhHhHHHHHHHHhCCC---CCHHHHHHHHHhcccccCCCCCc---
Q 047470 520 VL--AAVAPNIPFIEIGNYELVTDYALFSGTSMAAPHVAGVAALLKAIHRD---WSPAAIRSAIMTTAYPVNFAENE--- 591 (757)
Q Consensus 520 I~--sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~---~s~~~ik~~L~~TA~~~~~~~~~--- 591 (757)
.. +....+ .|..++|||||||||||++|||+|+++. +...++..+...+.+++......
T Consensus 260 ~~~~~~~~~~-------------~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~ 326 (357)
T d1t1ga_ 260 ATGYEVVIDG-------------ETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIAN 326 (357)
T ss_dssp TEEEEEEETT-------------EEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSS
T ss_pred CCceEEecCC-------------ceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCC
Confidence 54 344333 8999999999999999999999999753 23444444433333333211000
Q ss_pred ----cccCCCCCCCCCCCccCccccCC
Q 047470 592 ----IGVVPATPLDFGAGHIDPNKAMD 614 (757)
Q Consensus 592 ----~~~~~~~~~~~G~G~vd~~~Al~ 614 (757)
....++++..+|||++|+.++++
T Consensus 327 ~~~~~~a~~G~d~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 327 RARIYQAGPGWDPCTGLGSPIGIRLLQ 353 (357)
T ss_dssp SSCCSBCCSSSBTTTBTCEECHHHHHH
T ss_pred CCCcccCccCCCCCccCchhhHHHHHH
Confidence 00345678889999999888776
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=3e-28 Score=264.11 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=92.4
Q ss_pred CCCCCCchhHHHhhcccCCCCCccccccCCceeeccCCceEEeeeccccCCCCC-CCHHHHHHHHHHHHh-CCCcEEEeC
Q 047470 217 RDFFGHGTHTSSTAAGNHVEGVSHFGYAKGTARGIAPRAHVAMYKVLWATDTEE-SAASDVLAGMDQAIA-DGVDIMSLS 294 (757)
Q Consensus 217 ~d~~gHGThVAGiiag~~~~~~~~~G~~~~~~~GvAP~A~l~~~kv~~~~~~~g-~~~~~i~~ai~~a~~-~g~dVIn~S 294 (757)
.+..+||||+++++.+.. ....+.||||+|+|++++++. ..+ ....+++++|++|++ ++++|||+|
T Consensus 65 ~~~~~~~~~~~~~~e~~l---------d~~~~~gvAp~a~~~~~~~~~---~~~~~~~~~~~~a~~~a~~~~~~~Vis~S 132 (369)
T d1ga6a_ 65 SSNGDYSDDQQGQGEWDL---------DSQSIVGSAGGAVQQLLFYMA---DQSASGNTGLTQAFNQAVSDNVAKVINVS 132 (369)
T ss_dssp CTTSCCCBCHHHHHHHHH---------HHHHHHHHTTSCEEEEEEEEE---CTTSSTTHHHHHHHHHHHHHCCCSEEEEC
T ss_pred CCCCCCCCCCCcceeecc---------ccccccccccCceEEEEEEeC---CCCCcchHHHHHHHHHHHHcCCCceeecc
Confidence 346789999999987652 122347999999999999998 555 677899999999986 579999999
Q ss_pred CCCCC----CCCccCHHHHHHHHHHhCCcEEEEecCCCC-CCCC-------------cccCCCceEEeccccc
Q 047470 295 LGFDQ----TPYFNDVIAIASLSAIENGIVVVCAAGNDG-FPRS-------------IHNGAPWITTVGAGTL 349 (757)
Q Consensus 295 lG~~~----~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~g-~~~~-------------~~~~ap~~itVgas~~ 349 (757)
||... .....+.+..++.++.++|++||+||||+| .... .+...|++++|+++..
T Consensus 133 ~g~~~~~~~~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~~ 205 (369)
T d1ga6a_ 133 LGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTL 205 (369)
T ss_dssp CCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEE
T ss_pred ccccccCCCcchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeecc
Confidence 99864 233445667777788899999999999998 3221 1234578899987543
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=98.87 E-value=2.4e-09 Score=84.35 Aligned_cols=70 Identities=10% Similarity=0.171 Sum_probs=56.2
Q ss_pred CceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEecceeeEEEEEcCHHHHHHHHcCCCeEEEEeccccc
Q 047470 36 HQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYNHVIQGFSARLTPSQLSEIEKSPAHLATYPESFGK 115 (757)
Q Consensus 36 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~s~~l~~~~~~~L~~~p~V~~V~~~~~~~ 115 (757)
.++|||.||++...........++. +. +.++.+.|+ .|+||+++|++++++.|+++|+|.+||+|+.++
T Consensus 1 e~~YIV~fK~~~~~~~~~~~~~~v~----~~------gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~ 69 (71)
T d1scjb_ 1 EKKYIVGFKQTMSAMSSAKKKDVIS----QK------GGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAH 69 (71)
T ss_dssp CEEEEEEECSSSSCCSHHHHHHHHH----TT------TCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEE
T ss_pred CCcEEEEECCCCChHHHHHHHHHHH----Hc------CCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEE
Confidence 3689999999976544333333322 22 689999998 799999999999999999999999999998875
Q ss_pred c
Q 047470 116 L 116 (757)
Q Consensus 116 ~ 116 (757)
.
T Consensus 70 a 70 (71)
T d1scjb_ 70 E 70 (71)
T ss_dssp E
T ss_pred c
Confidence 3
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=98.70 E-value=1.1e-08 Score=80.81 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=50.0
Q ss_pred CceEEEEeCCCCCCCccccHHHHHHHhhcccCCCCCCCCcEEEEec-ceeeEEEEEcCHHHHHHHHcCCC--eEEEEecc
Q 047470 36 HQTYIIHMDHSHKPSAFLTHESWHLSILKSASYPADRNNMLLYSYN-HVIQGFSARLTPSQLSEIEKSPA--HLATYPES 112 (757)
Q Consensus 36 ~~~yIV~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~g~s~~l~~~~~~~L~~~p~--V~~V~~~~ 112 (757)
.|+|||.||++........+..++.. . +.++.+.|. +.|+||+++++++.+++|+++|+ |.+||+|+
T Consensus 2 aG~YIVvlK~~~~~~~~~~~~~~~~~----~------~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 2 AGKFIVIFKNDVSEDKIRETKDEVIA----E------GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHH----H------TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CccEEEEECCCCCHHHHHHHHHHHHh----c------CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 58999999998743333333333332 1 345667776 58999999999999999999665 99999986
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.0025 Score=58.71 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=62.3
Q ss_pred ceeeeEEccCCCCcccccCCCCC--CCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccCCC-------------
Q 047470 378 TDAPLYYGKNDVNKSICHLGSLN--PDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDTPD------------- 442 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~~--~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~~~------------- 442 (757)
.+.++||.+- |...+++ ..+++|||+|+++|. +.+.+|..+|...|| +|+|++.+..
T Consensus 39 v~g~lVy~n~------G~~~Df~~L~~~v~GkI~l~r~G~-~~~~~Kv~~A~~~GA-~gviiysDp~d~~~~~~~~~~~g 110 (193)
T d1de4c2 39 VTGKLVHANF------GTKKDFEDLYTPVNGSIVIVRAGK-ITFAEKVANAESLNA-IGVLIYMDQTKFPIVNAELSFFG 110 (193)
T ss_dssp EEECEEECST------TCHHHHHTCSSCCTTSEEEEESCS-SCHHHHHHHHHHTTC-CCEEEECCTTTSCCSCTTCCCCE
T ss_pred eeEEEEEccC------CCHHHHHHhccccCceEEEEeCCC-CCHHHHHHHHHHcCc-eEEEEecCccccCCcCccccccc
Confidence 4567888654 3222221 357899999999999 999999999999999 9999997643
Q ss_pred ---C-CCC---------------------CccccEEEechhhHHHHHHHHh
Q 047470 443 ---I-DSD---------------------EYYIPSLILPTSAGTSIRQYVT 468 (757)
Q Consensus 443 ---~-~~~---------------------~~~~p~~~i~~~~g~~l~~~~~ 468 (757)
+ ..| .-.||+.-|+..|++.|+..+.
T Consensus 111 ~~~~~~GDPlTPg~ps~~~~~~~~~~~~~lP~IP~~PIS~~dA~~lL~~L~ 161 (193)
T d1de4c2 111 HAHLGTGDPYTPGFPSFNHTQFPPSRSSGLPNIPVQTISRAAAEKLFGNME 161 (193)
T ss_dssp ECCSSSSCTTSTTSCCCGGGTCCSCCCTTSCSSCEEECCHHHHHHHHTTBC
T ss_pred ccccCCCCCCCCCcccccccccCccccCCCCcCCeeeCCHHHHHHHHHHcC
Confidence 0 000 1137999999999999998774
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=95.93 E-value=0.066 Score=43.93 Aligned_cols=91 Identities=8% Similarity=-0.039 Sum_probs=63.7
Q ss_pred CCCCeEEeeecCCCceEEEEEEEeecCCCcee-EEEEEeCCCCcEEEEecCeEEEeccceeEEEEEEEEEcc-CCCceEE
Q 047470 658 LNYPSFAAVFTNETTAKNFSRVVKNVGAEDSI-YRAVLEFPAGMNIRIEPSTLKFTQKYQLLDFALSVEIDR-ESPRVSY 735 (757)
Q Consensus 658 ln~ps~~~~~~~~~~~~~~~rtvtnv~~~~~t-y~~~v~~p~g~~v~v~p~~~~~~~~~~~~~~~vt~~~~~-~~~~~~~ 735 (757)
+..|++.+.- +...+++.+|+|.|....+ -++.+..|+|=+++.... .+. +|++++++++|+... ...+.|.
T Consensus 6 ~t~p~~~v~p---G~~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~~~~~--~L~-pG~s~~~~~~Vt~p~~a~~G~Y~ 79 (103)
T d1w8oa1 6 FTIPDVALEP---GQQVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQGSVE--PLM-PGRQAKGQVTITVPAGTTPGRYR 79 (103)
T ss_dssp EECCCEEECT---TCEEEEEEEEECCSSSCBSSCEEEEECCTTSEEEEEEC--CBC-TTCEEEEEEEEECCTTCCCEEEE
T ss_pred ccCcceeeCC---CCeEEEEEEEEeCCCCceeeeeEEEcCCCCccccCcce--eeC-CCCcEEEEEEEECCCCCCCceEE
Confidence 3446665533 3489999999999987543 567889999987765544 454 899999999999965 3445555
Q ss_pred EEEEEEECCccEEEEEEEEE
Q 047470 736 GYLKWIDQYNHTVSSPVVAI 755 (757)
Q Consensus 736 G~~~~~~~~~~~v~~P~~v~ 755 (757)
=.++.++ +.......+.+.
T Consensus 80 i~~~a~~-~~~~~s~t~tvt 98 (103)
T d1w8oa1 80 VGATLRT-SAGNASTTFTVT 98 (103)
T ss_dssp EEEEEEE-TTEEEEEEEEEE
T ss_pred EEEEEEe-CCcceEEEEEEE
Confidence 5678887 555555555544
|
| >d3bi1a2 c.8.4.1 (A:118-350) Glutamate carboxypeptidase II {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Glutamate carboxypeptidase II species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.044 Score=51.77 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=44.3
Q ss_pred ceeeeEEccCCCCcccccCCCC------CCCCccceEEEEeCCCCCchhHHHHHHHHcCCeEEEEeccC
Q 047470 378 TDAPLYYGKNDVNKSICHLGSL------NPDEVTGKVVFCDNSNRIDTYSQMEEVDRAGAYAAIFLTDT 440 (757)
Q Consensus 378 ~~~p~~~~~~~~~~~~c~~~~~------~~~~~~gkivl~~~g~~~~~~~k~~~~~~~Ga~~g~i~~~~ 440 (757)
.+.++||.+- |...++ ..-+++|||+|+++|. +.+.+|..+|...|| +|+|++++
T Consensus 53 v~g~~Vyvny------G~~~Df~~L~~~~gi~~~gkIvl~ryG~-~~~~~Kv~~A~~~GA-~GviiysD 113 (233)
T d3bi1a2 53 PEGDLVYVNY------ARTEDFFKLERDMKINCSGKIVIARYGK-VFRGNKVKNAQLAGA-KGVILYSD 113 (233)
T ss_dssp CEECEEECTT------CCHHHHHHHHHTSCCCCTTCEEEEECCS-SCHHHHHHHHHHTTC-SEEEEECC
T ss_pred eeEEEEEecC------CcHHHHHHHHHhcCCcccceEEEEeCCC-CchhHHHHHHHHcCc-eEEEEecC
Confidence 4567788553 443332 1458999999999999 999999999999999 99999987
|