Citrus Sinensis ID: 047472

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVSM
ccccEEEEccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHHHcHHHHHHHHHHcccccccEEEEEEcccccccccccccEEEEEcccHHHccccccc
ccEEEEEEcccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHcHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEEcHHHHHHHccccc
MEVVKVLHmnkgdgetsyaknsTVQSKIISTAKPAIEEAILGILCekvpesigiadlgcssgpnslLVISEIMDIIHARcrnldrpspefrvslndlpgndfnsIFETLPAFFKKQkqekgigfgrCYVSAvagsfydrlfpdkslhfvhsssslhwlsqvsm
MEVVKVlhmnkgdgetsyaknstvqSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHfvhsssslhwlsqvsm
MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKslhfvhsssslhwlsqvsM
***************************IISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHW******
***VKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCR**DRPSPEFRVSLNDLPGNDFNSIFETLPAFFK******GIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVS*
MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVSM
*EVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVSM
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVSM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query163 2.2.26 [Sep-21-2011]
Q9AR07 389 Jasmonate O-methyltransfe yes no 0.987 0.413 0.619 2e-44
Q9SBK6 392 Jasmonate O-methyltransfe N/A no 0.987 0.410 0.596 9e-44
Q9AVJ9 378 Monomethylxanthine methyl N/A no 0.969 0.417 0.470 1e-37
Q8H0G0 384 Theobromine synthase 2 OS N/A no 0.969 0.411 0.476 1e-37
Q84PP7 384 Monomethylxanthine methyl N/A no 0.969 0.411 0.470 1e-37
Q9SPV4 359 Salicylate O-methyltransf N/A no 0.938 0.426 0.484 1e-37
Q8H0D2 384 3,7-dimethylxanthine N-me N/A no 0.969 0.411 0.470 2e-37
A4GE69 372 7-methylxanthosine syntha N/A no 0.975 0.427 0.446 2e-37
Q9AVK0 372 7-methylxanthosine syntha N/A no 0.975 0.427 0.446 2e-37
Q9AVK1 385 Probable caffeine synthas N/A no 0.975 0.412 0.452 2e-36
>sp|Q9AR07|JMT_ARATH Jasmonate O-methyltransferase OS=Arabidopsis thaliana GN=JMT PE=1 SV=3 Back     alignment and function desciption
 Score =  177 bits (450), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/168 (61%), Positives = 120/168 (71%), Gaps = 7/168 (4%)

Query: 1   MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVP-ESIGIADLGC 59
           MEV++VLHMNKG+GETSYAKNST QS IIS  +  ++EA+  ++       SIGIADLGC
Sbjct: 1   MEVMRVLHMNKGNGETSYAKNSTAQSNIISLGRRVMDEALKKLMMSNSEISSIGIADLGC 60

Query: 60  SSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQE 119
           SSGPNSLL IS I+D IH  C +LDRP PE RVSLNDLP NDFN I  +LP F+ +    
Sbjct: 61  SSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNN 120

Query: 120 KGIGFGR------CYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQV 161
           K            C+VSAV GSFY RLFP +SLHFVHSSSSLHWLSQV
Sbjct: 121 KEGLGFGRGGGESCFVSAVPGSFYGRLFPRRSLHFVHSSSSLHWLSQV 168
Catalyzes the methylation of jasmonate into methyljasmonate, a plant volatile that acts as an important cellular regulator mediating diverse developmental processes and defense responses.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4EC: 1
>sp|Q9SBK6|JMT_BRARP Jasmonate O-methyltransferase OS=Brassica rapa subsp. pekinensis GN=JMT PE=1 SV=1 Back     alignment and function description
>sp|Q9AVJ9|MXMT1_COFAR Monomethylxanthine methyltransferase 1 OS=Coffea arabica GN=MXMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q8H0G0|CTS2_COFAR Theobromine synthase 2 OS=Coffea arabica GN=CTS2 PE=1 SV=1 Back     alignment and function description
>sp|Q84PP7|MXMT2_COFAR Monomethylxanthine methyltransferase 2 OS=Coffea arabica GN=MXMT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SPV4|SAMT_CLABR Salicylate O-methyltransferase OS=Clarkia breweri GN=SAMT PE=1 SV=1 Back     alignment and function description
>sp|Q8H0D2|DXMT1_COFAR 3,7-dimethylxanthine N-methyltransferase OS=Coffea arabica GN=DXMT1 PE=1 SV=1 Back     alignment and function description
>sp|A4GE69|XMT1_COFCA 7-methylxanthosine synthase 1 OS=Coffea canephora GN=XMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AVK0|XMT1_COFAR 7-methylxanthosine synthase 1 OS=Coffea arabica GN=XMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9AVK1|CS3_COFAR Probable caffeine synthase 3 OS=Coffea arabica GN=CS3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query163
225458203 375 PREDICTED: jasmonate O-methyltransferase 0.987 0.429 0.722 7e-55
225458205 375 PREDICTED: jasmonate O-methyltransferase 0.987 0.429 0.716 1e-54
440550959 367 salicylic acid carboxyl methyltransferas 0.987 0.438 0.608 4e-54
224085700 369 predicted protein [Populus trichocarpa] 0.987 0.436 0.708 6e-53
255538718 372 Jasmonate O-methyltransferase, putative 0.987 0.432 0.691 1e-51
147858669 401 hypothetical protein VITISV_039704 [Viti 1.0 0.406 0.576 4e-51
225431073 370 PREDICTED: salicylate O-methyltransferas 0.987 0.435 0.577 2e-50
297734974 364 unnamed protein product [Vitis vinifera] 0.987 0.442 0.577 2e-50
356552031 381 PREDICTED: jasmonate O-methyltransferase 0.987 0.422 0.685 4e-50
224144626 367 predicted protein [Populus trichocarpa] 0.987 0.438 0.592 8e-50
>gi|225458203|ref|XP_002281579.1| PREDICTED: jasmonate O-methyltransferase [Vitis vinifera] gi|302142533|emb|CBI19736.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  218 bits (555), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 117/162 (72%), Positives = 136/162 (83%), Gaps = 1/162 (0%)

Query: 1   MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPESIGIADLGCS 60
           MEV++VLHMNKG GETSYA NSTVQS IISTAKP  EEAIL I    +PES+GIADLGCS
Sbjct: 1   MEVMQVLHMNKGAGETSYATNSTVQSNIISTAKPVTEEAILDIFNNVLPESVGIADLGCS 60

Query: 61  SGPNSLLVISEIMDIIHARCRNLDRP-SPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQE 119
           SGPN+LLV+SEI+D+I+A+ + L RP SPEFRV LNDL GNDFN++F +LPAF+ K K+E
Sbjct: 61  SGPNTLLVVSEILDVIYAKWQQLGRPCSPEFRVYLNDLIGNDFNNVFGSLPAFYNKLKEE 120

Query: 120 KGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQV 161
           KG  FG C++S V GSFY R+FP KSLHFVHSSSSLHWLSQV
Sbjct: 121 KGSEFGPCFISGVPGSFYGRVFPSKSLHFVHSSSSLHWLSQV 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225458205|ref|XP_002281588.1| PREDICTED: jasmonate O-methyltransferase [Vitis vinifera] gi|302142531|emb|CBI19734.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|440550959|gb|AGC11863.1| salicylic acid carboxyl methyltransferase [Camellia japonica] Back     alignment and taxonomy information
>gi|224085700|ref|XP_002307671.1| predicted protein [Populus trichocarpa] gi|222857120|gb|EEE94667.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255538718|ref|XP_002510424.1| Jasmonate O-methyltransferase, putative [Ricinus communis] gi|223551125|gb|EEF52611.1| Jasmonate O-methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147858669|emb|CAN82906.1| hypothetical protein VITISV_039704 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225431073|ref|XP_002263459.1| PREDICTED: salicylate O-methyltransferase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734974|emb|CBI17336.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356552031|ref|XP_003544375.1| PREDICTED: jasmonate O-methyltransferase-like [Glycine max] Back     alignment and taxonomy information
>gi|224144626|ref|XP_002325354.1| predicted protein [Populus trichocarpa] gi|222862229|gb|EEE99735.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query163
TAIR|locus:2013149 389 JMT "jasmonic acid carboxyl me 0.871 0.365 0.617 1.4e-41
TAIR|locus:2144466 368 AT5G38020 [Arabidopsis thalian 0.834 0.369 0.471 1.3e-27
TAIR|locus:2115400 371 AT4G36470 [Arabidopsis thalian 0.871 0.382 0.448 1.7e-27
TAIR|locus:2154845 354 AT5G66430 [Arabidopsis thalian 0.803 0.370 0.430 5.2e-26
TAIR|locus:2095572 368 AT3G21950 [Arabidopsis thalian 0.834 0.369 0.457 1.1e-25
TAIR|locus:2080747 379 BSMT1 [Arabidopsis thaliana (t 0.809 0.348 0.436 5.3e-24
TAIR|locus:2179969 385 AT5G04380 "AT5G04380" [Arabido 0.834 0.353 0.415 4.8e-23
TAIR|locus:2179929 415 NAMT1 [Arabidopsis thaliana (t 0.828 0.325 0.4 9.1e-21
TAIR|locus:2053458 359 AT2G14060 [Arabidopsis thalian 0.815 0.370 0.401 1.9e-19
TAIR|locus:2200186 363 AT1G68040 [Arabidopsis thalian 0.791 0.355 0.382 2e-17
TAIR|locus:2013149 JMT "jasmonic acid carboxyl methyltransferase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 92/149 (61%), Positives = 108/149 (72%)

Query:     1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVP-ESIGIADLGC 59
             MEV++VLHMNKG+GETSYAKNST QS IIS  +  ++EA+  ++       SIGIADLGC
Sbjct:     1 MEVMRVLHMNKGNGETSYAKNSTAQSNIISLGRRVMDEALKKLMMSNSEISSIGIADLGC 60

Query:    60 SSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQE 119
             SSGPNSLL IS I+D IH  C +LDRP PE RVSLNDLP NDFN I  +LP F+ +    
Sbjct:    61 SSGPNSLLSISNIVDTIHNLCPDLDRPVPELRVSLNDLPSNDFNYICASLPEFYDRVNNN 120

Query:   120 K-GIGFGR-----CYVSAVAGSFYDRLFP 142
             K G+GFGR     C+VSAV GSFY RLFP
Sbjct:   121 KEGLGFGRGGGESCFVSAVPGSFYGRLFP 149
GO:0005634 "nucleus" evidence=ISM
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=NAS
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009694 "jasmonic acid metabolic process" evidence=IDA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA;IDA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP
GO:0030795 "jasmonate O-methyltransferase activity" evidence=IMP;IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0007165 "signal transduction" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2144466 AT5G38020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115400 AT4G36470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154845 AT5G66430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095572 AT3G21950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080747 BSMT1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179969 AT5G04380 "AT5G04380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2179929 NAMT1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053458 AT2G14060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200186 AT1G68040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014571001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (375 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
pfam03492 331 pfam03492, Methyltransf_7, SAM dependent carboxyl 1e-54
PLN02668 386 PLN02668, PLN02668, indole-3-acetate carboxyl meth 7e-32
>gnl|CDD|217591 pfam03492, Methyltransf_7, SAM dependent carboxyl methyltransferase Back     alignment and domain information 
 Score =  174 bits (444), Expect = 1e-54
 Identities = 68/128 (53%), Positives = 82/128 (64%), Gaps = 10/128 (7%)

Query: 36  IEEAILGILC-EKVPESIGIADLGCSSGPNSLLVISEIMDIIHARCRNLDR-PSPEFRVS 93
           +EEAI  +L     P SI IADLGCSSGPN+ L +S I+D +  + +  +    PEF+V 
Sbjct: 1   LEEAISELLLRNLFPNSIKIADLGCSSGPNTFLAVSNIIDTVEKKYQKENILEPPEFQVF 60

Query: 94  LNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSS 153
            NDLP NDFN++F+ LP F KK            +VS V GSFY RLFP  SLHFVHSS 
Sbjct: 61  FNDLPSNDFNTLFKLLPPFQKK--------KRSYFVSGVPGSFYGRLFPRNSLHFVHSSY 112

Query: 154 SLHWLSQV 161
           SLHWLSQV
Sbjct: 113 SLHWLSQV 120

This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesised through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyzes the second step to produce theobromine. Length = 331
>gnl|CDD|178273 PLN02668, PLN02668, indole-3-acetate carboxyl methyltransferase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 163
PLN02668 386 indole-3-acetate carboxyl methyltransferase 100.0
PF03492 334 Methyltransf_7: SAM dependent carboxyl methyltrans 100.0
TIGR02072 240 BioC biotin biosynthesis protein BioC. This enzyme 97.6
PRK01683 258 trans-aconitate 2-methyltransferase; Provisional 96.35
PRK14103 255 trans-aconitate 2-methyltransferase; Provisional 96.17
PRK10258 251 biotin biosynthesis protein BioC; Provisional 96.17
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 95.54
PRK06202232 hypothetical protein; Provisional 94.93
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 94.35
COG2226 238 UbiE Methylase involved in ubiquinone/menaquinone 94.3
KOG2940 325 consensus Predicted methyltransferase [General fun 94.26
smart00138264 MeTrc Methyltransferase, chemotaxis proteins. Meth 93.9
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 93.82
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 92.96
PRK07580230 Mg-protoporphyrin IX methyl transferase; Validated 92.51
TIGR00740239 methyltransferase, putative. A simple BLAST search 92.43
PRK00121202 trmB tRNA (guanine-N(7)-)-methyltransferase; Revie 92.2
PRK05785226 hypothetical protein; Provisional 91.93
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 91.86
PRK08317 241 hypothetical protein; Provisional 91.49
PRK06922 677 hypothetical protein; Provisional 91.3
PTZ00098 263 phosphoethanolamine N-methyltransferase; Provision 91.26
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 91.16
PLN02244 340 tocopherol O-methyltransferase 91.1
PF03848192 TehB: Tellurite resistance protein TehB; InterPro: 90.98
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 90.66
PF0824299 Methyltransf_12: Methyltransferase domain; InterPr 90.42
KOG2904328 consensus Predicted methyltransferase [General fun 90.12
PRK11188209 rrmJ 23S rRNA methyltransferase J; Provisional 88.74
PLN02490 340 MPBQ/MSBQ methyltransferase 88.18
PLN02336 475 phosphoethanolamine N-methyltransferase 88.11
COG4106 257 Tam Trans-aconitate methyltransferase [General fun 88.06
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 86.56
PRK14121 390 tRNA (guanine-N(7)-)-methyltransferase; Provisiona 86.35
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 86.25
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 86.05
TIGR00091194 tRNA (guanine-N(7)-)-methyltransferase. In E. coli 85.29
KOG3010 261 consensus Methyltransferase [General function pred 85.17
PLN02336 475 phosphoethanolamine N-methyltransferase 84.92
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 84.58
PLN02233261 ubiquinone biosynthesis methyltransferase 84.04
PF05175170 MTS: Methyltransferase small domain; InterPro: IPR 83.55
PRK12335287 tellurite resistance protein TehB; Provisional 82.72
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 81.63
smart00828224 PKS_MT Methyltransferase in polyketide synthase (P 80.95
COG2242187 CobL Precorrin-6B methylase 2 [Coenzyme metabolism 80.71
TIGR02469124 CbiT precorrin-6Y C5,15-methyltransferase (decarbo 80.62
>PLN02668 indole-3-acetate carboxyl methyltransferase Back     alignment and domain information 
Probab=100.00  E-value=9e-62  Score=423.41  Aligned_cols=163  Identities=38%  Similarity=0.637  Sum_probs=146.1

Q ss_pred             CcccceeeecCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCC-CceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 047472            1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVP-ESIGIADLGCSSGPNSLLVISEIMDIIHAR   79 (163)
Q Consensus         1 m~~~~~l~M~gG~G~~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~-~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~   79 (163)
                      |+++++|||+||+|++||++||.+|++++.+++|+|++||++++....+ ++++|||||||+|+||+.+|++||++|+++
T Consensus        13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~   92 (386)
T PLN02668         13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNSSPEVPFTAVDLGCSSGSNTIHIIDVIVKHMSKR   92 (386)
T ss_pred             ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcceeEEEecCCCCccHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999754445 799999999999999999999999999999


Q ss_pred             HhcCCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhH--hh--hCCCCCceEEEeecCcccccccCCCceeEEeccchh
Q 047472           80 CRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQK--QE--KGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSL  155 (163)
Q Consensus        80 ~~~~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~--~~--~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~al  155 (163)
                      |.+.++.+|||||||||||+||||+||++||.+.+...  ++  ...+.++||++|||||||+||||++||||+||+|||
T Consensus        93 ~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~sl  172 (386)
T PLN02668         93 YESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAFSL  172 (386)
T ss_pred             hhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeeccc
Confidence            98877788999999999999999999999998765321  11  001123699999999999999999999999999999


Q ss_pred             hcccCCCC
Q 047472          156 HWLSQVSM  163 (163)
Q Consensus       156 HWLS~vP~  163 (163)
                      |||||||.
T Consensus       173 HWLS~vP~  180 (386)
T PLN02668        173 HWLSQVPE  180 (386)
T ss_pred             eecccCch
Confidence            99999994

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine Back     alignment and domain information
>TIGR02072 BioC biotin biosynthesis protein BioC Back     alignment and domain information
>PRK01683 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PRK10258 biotin biosynthesis protein BioC; Provisional Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG2940 consensus Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>smart00138 MeTrc Methyltransferase, chemotaxis proteins Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed Back     alignment and domain information
>PRK05785 hypothetical protein; Provisional Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PRK06922 hypothetical protein; Provisional Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>KOG2904 consensus Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional Back     alignment and domain information
>PLN02490 MPBQ/MSBQ methyltransferase Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase Back     alignment and domain information
>KOG3010 consensus Methyltransferase [General function prediction only] Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes Back     alignment and domain information
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] Back     alignment and domain information
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
2eg5_A 372 The Structure Of Xanthosine Methyltransferase Lengt 2e-30
1m6e_X 359 Crystal Structure Of Salicylic Acid Carboxyl Methyl 5e-30
2efj_A 384 The Structure Of 1,7 Dimethylxanthine Methyltransfe 3e-27
3b5i_A 374 Crystal Structure Of Indole-3-Acetic Acid Methyltra 5e-17
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase Length = 372 Back     alignment and structure 
Iteration: 1

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 99/151 (65%), Gaps = 9/151 (5%)
Query: 1   MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVP---ESIGIADL 57
           ME+ +VL MN G+G+TSYAKNS     +++  KP +E+ +  +L   +P   + I +ADL
Sbjct: 1   MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 58  GCSSGPNSLLVISEIMDII----HARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFF 113
           GC+SGPN+LL + +I+  I      +   L+RP+   ++ LNDL  NDFNS+F+ LP+F+
Sbjct: 61  GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPT--IQIFLNDLFPNDFNSVFKLLPSFY 118
Query: 114 KKQKQEKGIGFGRCYVSAVAGSFYDRLFPDK 144
           +K ++E G   G C + A+ GSFY RLFP++
Sbjct: 119 RKLEKENGRKIGSCLIGAMPGSFYSRLFPEE 149
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl Methyltransferase (Samt) Length = 359 Back     alignment and structure
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase Length = 384 Back     alignment and structure
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid Methyltransferase Length = 374 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query163
3b5i_A 374 S-adenosyl-L-methionine:salicylic acid carboxyl me 7e-63
2efj_A 384 3,7-dimethylxanthine methyltransferase; SAM-depend 2e-59
1m6e_X 359 S-adenosyl-L-methionnine:salicylic acid carboxyl m 6e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-04
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Length = 374 Back     alignment and structure
 Score =  196 bits (500), Expect = 7e-63
 Identities = 62/168 (36%), Positives = 87/168 (51%), Gaps = 5/168 (2%)

Query: 1   MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEK--VPESIGIADLG 58
           M++ ++L M  G G+ SYA NS  Q+    +    +EE +  +       P      DLG
Sbjct: 1   MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60

Query: 59  CSSGPNSLLVISEIMDIIHARCRNLDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQ 118
           CSSG N++ +I  I+  I  R        PEF    +DLP NDFN++F+ LP        
Sbjct: 61  CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120

Query: 119 EK---GIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVSM 163
           E+     G    +V+ V GSFY RLFP +++ F HS+ SLHWLSQV  
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPE 168
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384 Back     alignment and structure
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query163
2efj_A 384 3,7-dimethylxanthine methyltransferase; SAM-depend 100.0
1m6e_X 359 S-adenosyl-L-methionnine:salicylic acid carboxyl m 100.0
3b5i_A 374 S-adenosyl-L-methionine:salicylic acid carboxyl me 100.0
2aot_A 292 HMT, histamine N-methyltransferase; classic methyl 96.35
3dtn_A 234 Putative methyltransferase MM_2633; structural gen 96.22
4gek_A 261 TRNA (CMO5U34)-methyltransferase; structural genom 95.82
3g5t_A 299 Trans-aconitate 3-methyltransferase; structural ge 95.69
3bgv_A 313 MRNA CAP guanine-N7 methyltransferase; alternative 95.6
2yqz_A 263 Hypothetical protein TTHA0223; RNA methyltransfera 95.54
3bus_A 273 REBM, methyltransferase; rebeccamycin synthesis; H 95.42
1vl5_A 260 Unknown conserved protein BH2331; putative methylt 94.75
4htf_A 285 S-adenosylmethionine-dependent methyltransferase; 94.69
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 94.54
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 94.24
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 94.17
2p35_A 259 Trans-aconitate 2-methyltransferase; SAM dependent 93.96
4hg2_A 257 Methyltransferase type 11; structural genomics, PS 93.93
3f4k_A 257 Putative methyltransferase; structural genomics, P 93.76
3ujc_A 266 Phosphoethanolamine N-methyltransferase; parasite; 93.59
3dh0_A219 SAM dependent methyltransferase; cystal structure, 93.57
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 93.5
3mgg_A 276 Methyltransferase; NYSGXRC, PSI-II, protein struct 93.46
2o57_A 297 Putative sarcosine dimethylglycine methyltransfera 93.35
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 93.31
2vdw_A 302 Vaccinia virus capping enzyme D1 subunit; nucleoti 93.27
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 93.06
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 93.02
3vc1_A 312 Geranyl diphosphate 2-C-methyltransferase; rossman 92.76
1xxl_A 239 YCGJ protein; structural genomics, protein structu 92.75
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 92.53
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 92.52
3kkz_A 267 Uncharacterized protein Q5LES9; putative methyltra 92.45
3bkx_A 275 SAM-dependent methyltransferase; YP_807781.1, cycl 92.35
3sm3_A 235 SAM-dependent methyltransferases; NESG, structural 92.34
1y8c_A 246 S-adenosylmethionine-dependent methyltransferase; 92.13
3lcc_A235 Putative methyl chloride transferase; halide methy 92.08
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 92.04
3ccf_A 279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 92.0
3ege_A 261 Putative methyltransferase from antibiotic biosyn 91.98
1ri5_A 298 MRNA capping enzyme; methyltransferase, M7G, messe 91.93
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 91.88
2p8j_A 209 S-adenosylmethionine-dependent methyltransferase; 91.58
3l8d_A 242 Methyltransferase; structural genomics, PSI, nysgr 91.36
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 91.35
1nkv_A 256 Hypothetical protein YJHP; structural genomics, PS 91.35
2p7i_A 250 Hypothetical protein; putative methyltransferase, 91.33
3dp7_A363 SAM-dependent methyltransferase; structural genomi 91.24
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 91.23
3dli_A 240 Methyltransferase; PSI-II, NYSGXRC, structural gen 91.21
2gs9_A211 Hypothetical protein TT1324; methyl transferase, s 91.12
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 91.03
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 90.99
1vlm_A219 SAM-dependent methyltransferase; possible histamin 90.83
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 90.82
3m70_A286 Tellurite resistance protein TEHB homolog; structu 90.77
3g5l_A 253 Putative S-adenosylmethionine dependent methyltran 90.72
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 90.59
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 90.58
3opn_A232 Putative hemolysin; structural genomics, PSI-2, pr 90.31
3dxy_A218 TRNA (guanine-N(7)-)-methyltransferase; rossmann f 89.83
3thr_A 293 Glycine N-methyltransferase; GNMT, folate, methylt 89.76
2r3s_A335 Uncharacterized protein; methyltransferase domain, 89.43
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 89.28
1jsx_A207 Glucose-inhibited division protein B; methyltransf 89.05
4df3_A233 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 89.01
4fsd_A 383 Arsenic methyltransferase; rossmann fold; 1.75A {C 88.91
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 88.83
1yzh_A214 TRNA (guanine-N(7)-)-methyltransferase; alpha-beta 88.68
2fca_A213 TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac 88.63
3kr9_A 225 SAM-dependent methyltransferase; class I rossmann- 88.26
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 87.49
3bkw_A 243 MLL3908 protein, S-adenosylmethionine dependent me 87.12
3hp7_A291 Hemolysin, putative; structural genomics, APC64019 86.67
3lec_A230 NADB-rossmann superfamily protein; PSI, MCSG, stru 86.22
1wzn_A252 SAM-dependent methyltransferase; structural genomi 85.79
1kpg_A 287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 85.61
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 85.4
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 85.24
3gnl_A244 Uncharacterized protein, DUF633, LMOF2365_1472; st 85.13
3q7e_A 349 Protein arginine N-methyltransferase 1; HET: SAH; 84.99
1qzz_A 374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 84.88
3tqs_A 255 Ribosomal RNA small subunit methyltransferase A; p 84.8
2zfu_A215 Nucleomethylin, cerebral protein 1; nucleolar prot 84.64
1pjz_A203 Thiopurine S-methyltransferase; polymorphism, S-ad 84.57
3ocj_A305 Putative exported protein; structural genomics, PS 84.48
3gu3_A 284 Methyltransferase; alpha-beta protein, structural 84.29
3mti_A185 RRNA methylase; SAM-dependent, PSI, MCSG, structur 84.01
1l3i_A192 Precorrin-6Y methyltransferase/putative decarboxyl 83.77
1dus_A194 MJ0882; hypothetical protein, methanococcus jannas 83.42
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 82.15
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 82.07
4dzr_A215 Protein-(glutamine-N5) methyltransferase, release 81.86
3r0q_C 376 Probable protein arginine N-methyltransferase 4.2; 81.12
2b3t_A276 Protein methyltransferase HEMK; translation termin 80.92
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 80.91
2plw_A201 Ribosomal RNA methyltransferase, putative; malaria 80.78
1ws6_A171 Methyltransferase; structural genomics, riken stru 80.7
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Back     alignment and structure
Probab=100.00  E-value=5.8e-63  Score=430.23  Aligned_cols=161  Identities=44%  Similarity=0.836  Sum_probs=141.0

Q ss_pred             CcccceeeecCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhhhcCCCC---ceEEEeecCCCCcccHHHHHHHHHHHH
Q 047472            1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEKVPE---SIGIADLGCSSGPNSLLVISEIMDIIH   77 (163)
Q Consensus         1 m~~~~~l~M~gG~G~~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~~~~---~~~IaDlGCS~G~Nsl~~~~~ii~~i~   77 (163)
                      |+++++|||+||+|++||++||. |++++.+++|++++||++++....++   +++|||||||+|+||+.+++.||++|+
T Consensus         1 m~~~~~~~M~gg~G~~sY~~nS~-Q~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~IaDlGCssG~NT~~~v~~ii~~i~   79 (384)
T 2efj_A            1 MELQEVLHMNGGEGDTSYAKNSS-YNLFLIRVKPVLEQCIQELLRANLPNINKCFKVGDLGCASGPNTFSTVRDIVQSID   79 (384)
T ss_dssp             --CTTTCCCCC----CCHHHHCC-TTTTHHHHHHHHHHHHHHHHHTTCTTTTTEEEEEEETCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcccccccCCCCChhhHHHhHH-HHHHHHHHHHHHHHHHHHhhhcccCCcCCceEEEecCCCCCchHHHHHHHHHHHHH
Confidence            89999999999999999999999 99999999999999999998865566   999999999999999999999999999


Q ss_pred             HHHhc--CCCCCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEEeecCcccccccCCCceeEEeccchh
Q 047472           78 ARCRN--LDRPSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSL  155 (163)
Q Consensus        78 ~~~~~--~~~~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~al  155 (163)
                      ++|.+  .+.++|||||||||||+||||+||++||.+++++.++.|.+.++||++|||||||+||||++|+||+||++||
T Consensus        80 ~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aL  159 (384)
T 2efj_A           80 KVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCL  159 (384)
T ss_dssp             CC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEEEEECCSCTTSCCSCTTCEEEEEEESCT
T ss_pred             HHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceEEEecchhhhhccCCCCceEEEEeccee
Confidence            99865  5666899999999999999999999999999988777777677899999999999999999999999999999


Q ss_pred             hcccCCC
Q 047472          156 HWLSQVS  162 (163)
Q Consensus       156 HWLS~vP  162 (163)
                      ||||++|
T Consensus       160 HWls~~p  166 (384)
T 2efj_A          160 HWLSQVP  166 (384)
T ss_dssp             TBCSSSC
T ss_pred             eecCCCc
Confidence            9999998
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Back     alignment and structure
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} Back     alignment and structure
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 Back     alignment and structure
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Back     alignment and structure
>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Back     alignment and structure
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} Back     alignment and structure
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Back     alignment and structure
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 Back     alignment and structure
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Back     alignment and structure
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Back     alignment and structure
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Back     alignment and structure
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} Back     alignment and structure
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 163
d1m6ex_ 359 c.66.1.35 (X:) Salicylic acid carboxyl methyltrans 2e-69
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Length = 359 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

 Score =  212 bits (540), Expect = 2e-69
 Identities = 78/165 (47%), Positives = 104/165 (63%), Gaps = 10/165 (6%)

Query: 1   MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEK-VPESIGIADLGC 59
           M+V +VLHM  G GE SYA NS +Q ++IS  KP  E AI  +     V   + IADLGC
Sbjct: 1   MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGC 60

Query: 60  SSGPNSLLVISEIMDIIHARCRNLDR-PSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQ 118
           SSGPN+L  ++E++  +    + + R  SPE+++ LNDLPGNDFN+IF +LP        
Sbjct: 61  SSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDV--- 117

Query: 119 EKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWLSQVSM 163
                 G C+++ V GSFY RLFP  +LHF+HSS SL WLSQV +
Sbjct: 118 -----DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPI 157

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query163
d1m6ex_ 359 Salicylic acid carboxyl methyltransferase (SAMT) { 100.0
d1jqea_ 280 Histamine methyltransferase {Human (Homo sapiens) 97.3
d1ve3a1 226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 96.91
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 96.2
d2a14a1257 Indolethylamine N-methyltransferase, INMT {Human ( 96.14
d1p91a_ 268 rRNA methyltransferase RlmA {Escherichia coli [Tax 95.66
d1xxla_ 234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 95.6
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 95.56
d1ri5a_ 252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 95.09
d1vl5a_ 231 Hypothetical protein BH2331 {Bacillus halodurans [ 94.96
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 94.85
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 94.63
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 94.33
d2o57a1 282 Putative sarcosine dimethylglycine methyltransfera 94.23
d1nkva_ 245 Hypothetical Protein YjhP {Escherichia coli [TaxId 94.09
d2fcaa1204 tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil 93.74
d2gh1a1 281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 93.12
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 93.06
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 93.01
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 93.0
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 92.79
d1yzha1204 tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep 92.65
d2p7ia1 225 Hypothetical protein ECA1738 {Erwinia carotovora [ 92.63
d2g72a1263 Phenylethanolamine N-methyltransferase, PNMTase {H 92.52
d1pjza_201 Thiopurine S-methyltransferase {Pseudomonas syring 90.93
d1l3ia_186 Precorrin-6Y methyltransferase (CbiT) {Archaeon Me 89.07
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 87.33
d2avna1246 Hypothetical methyltransferase TM1389 {Thermotoga 87.08
d1g8sa_230 Fibrillarin homologue {Archaeon Methanococcus jann 86.56
d1dusa_194 Hypothetical protein MJ0882 {Archaeon Methanococcu 86.45
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 83.27
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 82.56
d1nt2a_209 Fibrillarin homologue {Archaeon Archaeoglobus fulg 81.45
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 80.85
>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=100.00  E-value=5.3e-68  Score=456.42  Aligned_cols=155  Identities=50%  Similarity=0.881  Sum_probs=144.6

Q ss_pred             CcccceeeecCCCCCchHHHhcHHHHHHHHHHHHHHHHHHHhhhhcC-CCCceEEEeecCCCCcccHHHHHHHHHHHHHH
Q 047472            1 MEVVKVLHMNKGDGETSYAKNSTVQSKIISTAKPAIEEAILGILCEK-VPESIGIADLGCSSGPNSLLVISEIMDIIHAR   79 (163)
Q Consensus         1 m~~~~~l~M~gG~G~~sYa~NS~~Q~~~i~~~~p~l~~ai~~~~~~~-~~~~~~IaDlGCS~G~Nsl~~~~~ii~~i~~~   79 (163)
                      |+++++|||+||+|++||++||.+|+++|.+++|+|++||+++++.. .+++++|||||||+||||+.+|++||++|+++
T Consensus         1 m~~~~~l~M~gG~G~~SYa~NS~~Q~~~i~~~kp~leeai~~~~~~~~~~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~   80 (359)
T d1m6ex_           1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRLAIADLGCSSGPNALFAVTELIKTVEEL   80 (359)
T ss_dssp             CCCHHHHCCCCCTTSTTTTSSCHHHHHHHHHTHHHHHHHHHHHHSSSSSSSEECCEEESCCSSTTTTTGGGTTHHHHHHH
T ss_pred             CCccEeeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCceEEEEeCCCCCccHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999997654 67899999999999999999999999999999


Q ss_pred             HhcCCC-CCCceEEEeCCCCCCchHHHHhhChhhhhhhHhhhCCCCCceEEEeecCcccccccCCCceeEEeccchhhcc
Q 047472           80 CRNLDR-PSPEFRVSLNDLPGNDFNSIFETLPAFFKKQKQEKGIGFGRCYVSAVAGSFYDRLFPDKSLHFVHSSSSLHWL  158 (163)
Q Consensus        80 ~~~~~~-~~peiqv~~nDLP~NDFntLF~~l~~~~~~~~~~~~~~~~~~f~~~vpgSFY~rlfP~~Svh~~~Ss~alHWL  158 (163)
                      |++.+. ++|||||||||||+||||+||++||..        .+..++||++|||||||+||||++||||+||+||||||
T Consensus        81 ~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~--------~~~~~~~f~~gvpGSFY~rLfP~~Slh~~~Ss~alHWL  152 (359)
T d1m6ex_          81 RKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE--------NDVDGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWL  152 (359)
T ss_dssp             HHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS--------CSCTTCEEEEEEESCSSSCCSCTTCBSCEEEESCTTBC
T ss_pred             HHhcCCCCCCeEEEEeCCCCcchHHHHHHhcccc--------ccCCCCeEEEecCCchhhhcCCCCceEEeeehhhhhhh
Confidence            987765 578999999999999999999999863        22346899999999999999999999999999999999


Q ss_pred             cCCCC
Q 047472          159 SQVSM  163 (163)
Q Consensus       159 S~vP~  163 (163)
                      ||+|.
T Consensus       153 S~vP~  157 (359)
T d1m6ex_         153 SQVPI  157 (359)
T ss_dssp             SSCCS
T ss_pred             hcCCc
Confidence            99994
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure