Citrus Sinensis ID: 047476

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460---
Protein Sequence
MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccccccccEEEEEEEcEEEccccccccccccEEEEEEEEEEHHHHHHHHHccccccEEEEcccccccEEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEcccccEEEccccccEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEccEEEEEccccccccccccccEEEEEEEEcccccccccHHHHHcccccccEEEEEcccccccccccccccccccccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHcccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccccHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHHHHHccccEEEEEEEcccccccccccccccEEccccEEEcccEEEEEEEEEEcccccccccHHHcEEEEEEEEEccHHHHHHHHcccHHHEEEEEEcccccEEEEEEEccccEEEEEEcccccccEEEEEcccEEEEEEEcccccEEEEcccccEEEEEEEEEccccccccHHHHHHHHHcccccEEEEEcccHHEEEccccccccccccccEEEEEEEEcccccHHHHHHHHHHccccccEEEEEcccccccccccccccccccHcccccccccHHcccccEEEEEEcccccHHHHHHHHHHHHHcHHHEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccEEEEc
Coil and Loop (DISEMBL)
MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLesffvrdddneetKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELAldfhdplwpehgsenheavfdlpmhvyghvgleslelfscninasRFNNFIALKELSLGWIQLSVQSIRELLVqcpfleslslkkcweieylditvpnlrlkrlvidkcdfnqyryeiaapnlrfwkysgteGMFRVERQNFLTEVEldfalqpdfDEEIGEFLYELLRQLEIVRVLTVCSFLLQviphaeepfgmtvplEVKHLtlnagmhpheyyginfmlkscpslqtltinigpgrrfpnyrppfeldpekcwtknivlypcvtsslrvvnvrgfkgtmtEARFLNYLIFFGNVLQELNLYlsdevdenganrETYLGRAQRMQQFKRASVNLSISIY
Flexible Loop (DISEMBL)
MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLditvpnlrlkrLVIDKCDFNQYRyeiaapnlrfWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRaqrmqqfkrasvnlsisiy
Low Complexity Region (SEG)
MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY
Disordered region (IsUnstruct)
********MFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEV********************************
Disordered Region (DISOPRED)
****DDV*MFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY
Disordered Region (DISEMBL)
MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY
Disordered Region (DISPRO)
******VDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	463	2.2.26 [Sep-21-2011]
Q9C7X8	479	Putative F-box/LRR-repeat	yes	no	0.920	0.889	0.339	2e-64
Q9LJ48	463	Putative F-box protein At	no	no	0.881	0.881	0.355	6e-62
Q9FFU7	472	Putative F-box/LRR-repeat	no	no	0.956	0.938	0.321	3e-61
Q9M1Q1	461	F-box protein At3g62230 O	no	no	0.984	0.989	0.314	2e-60
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.755	0.746	0.274	1e-23
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.820	0.817	0.255	1e-23
Q84W80	481	F-box/LRR-repeat protein	no	no	0.697	0.671	0.267	2e-22
Q9LZ15	456	Putative F-box/LRR-repeat	no	no	0.725	0.736	0.264	2e-21
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.730	0.741	0.277	2e-19
Q9LXR4	454	Putative F-box/LRR-repeat	no	no	0.866	0.883	0.246	5e-19

>sp|Q9C7X8|FBL33_ARATH Putative F-box/LRR-repeat protein At1g56400 OS=Arabidopsis thaliana GN=At1g56400 PE=2 SV=1

 Score =  246 bits (629), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 239/456 (52%), Gaps = 30/456 (6%)

Query: 1   MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRD 60
           +A +   D  S L + L+ +IIS L FKE  RTS+L++RWR++   T+ I F E+ +V  
Sbjct: 6   IASSIQQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRWRYLCRETRNISFKETEYV-- 63

Query: 61  DDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVK 118
           D     K+  R  F  ++ QW+ +Y+   ++   + FS P +FL  V++ I FA++R VK
Sbjct: 64  DHFVSDKRSKRVSFAAYMCQWVSRYHGRYIETLEIYFSIPSDFLAAVESLIEFAVSRQVK 123

Query: 119 ELALDFHDPLW--PEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKE 176
            L LDF DP W      S        LP+ VY    LESL+++SC  + S+F+N    ++
Sbjct: 124 NLVLDFSDPSWISTSCASRYDYVCVQLPVCVYSLTTLESLKIYSCGFDPSKFSNSRLPRK 183

Query: 177 LSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR 236
           LS+GWI+L+   +  LL+  P L+SLS+  CW IE  +I      +K  V + CDF+ + 
Sbjct: 184 LSIGWIKLT--DVESLLLNSPTLKSLSINYCWGIEIRNIAGD---MKEFVFESCDFSSFM 238

Query: 237 YEI-AAPNLRFWKYSGTEGMFRVERQNF-LTEVELDFALQPDFDEEI------GEFLYEL 288
                 PN+  +KYSG    F V+R N  + +V LDF  +  +++        G  L   
Sbjct: 239 VCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYEDRNQRTKLEGSVLSAF 298

Query: 289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCP 348
           L  L   R L+VC +LLQ I   E+PF +  P+E +HL L   +H  E+ GI  +L +CP
Sbjct: 299 LNNLRGARTLSVCPYLLQTIQECEDPFDLLRPMETQHLVLRTRLHVMEFKGIKLLLDNCP 358

Query: 349 SLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEAR 408
           +L+TLT +I     F   +  + + P   W KN+  Y  +  +L+VV VR F G   E  
Sbjct: 359 NLETLTFDIFSRSLFSYNKSYYGVGPRSYWKKNLT-YKSLPKTLKVVVVRNFTGRFGELN 417

Query: 409 FLNYLIFFGN----------VLQELNLYLSDEVDEN 434
            L +LI  G           +L+ + LY+   + E+
Sbjct: 418 VLKFLIQSGRGRWPGREHGPMLERVELYMDSSMAES 453

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJ48|FB191_ARATH Putative F-box protein At3g29830 OS=Arabidopsis thaliana GN=At3g29830 PE=4 SV=1

 Score =  238 bits (608), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 155/436 (35%), Positives = 237/436 (54%), Gaps = 28/436 (6%)

Query: 8   DMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETK 67
           D  S L + ++ +I+S+L FK+  +TSILS+RWR+I    K I F ES +V     +   
Sbjct: 8   DRISSLPDVVLVMILSFLSFKDNVKTSILSKRWRNICYEAKNISFKESEYVDISVFDYVS 67

Query: 68  QLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQ--NCISFAIARDVKELALDFH 125
           +  R  F+ ++  W+ +    ++++F +    PV F V+  + I F+I+R VK+L LDF 
Sbjct: 68  K--RVSFVRYMLNWVSRVPIKVIESFEICLGFPVGFEVEIKSLIEFSISRQVKKLVLDFS 125

Query: 126 DPLWPE--HGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQ 183
            P W     G  N + V +LP  +YG   LESL +++C  + SRF N + L+ LS+GW +
Sbjct: 126 SPFWDNTWDGLRNDDFVIELPALIYGLQTLESLTIYACMFDPSRFTN-VGLRTLSIGWFR 184

Query: 184 LSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT--VPNLRLKRLVIDKCDFNQYRYEIAA 241
           L  + I  LL + P LESLS+  C    YLD       +R++ L+ID C        +  
Sbjct: 185 L--EKIESLLSKFPLLESLSIISC----YLDEVKLAGQIRVRELIIDNCIIPTMYCLLNL 238

Query: 242 PNLRFWKYSGTEGMFRVERQN--FLTEVELDFALQPDFDE------EIGEFLYELLRQLE 293
           PN+  +KYSG   +F  ++ N   L EV LDF ++ + DE      E G+ L  LL  L 
Sbjct: 239 PNIEIFKYSGNVIVFDFQKVNMILLKEVYLDFFIEHENDEPTYSPKEAGDILSHLLNDLR 298

Query: 294 IVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTL 353
             R LTVCS+LL+VI    +P  M   ++ +HL L   MHP+E+ G+  +L  CP+L+TL
Sbjct: 299 SSRTLTVCSYLLEVISECNDPVDMLRDVQAQHLVLETLMHPNEFTGMRLLLDHCPNLETL 358

Query: 354 TINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYL 413
           T  +   + FP  R  + +D    W +NI    C+  +L+++ VRGF  +  E   LNYL
Sbjct: 359 TFQLLCLKPFP-VRLQY-IDSHTLWLENIS-SRCLRRTLKILVVRGFCNSWNEFYLLNYL 415

Query: 414 IF--FGNVLQELNLYL 427
           +    G  L+ + LYL
Sbjct: 416 VLPEHGFALERVELYL 431

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFU7|FBL90_ARATH Putative F-box/LRR-repeat protein At5g54820 OS=Arabidopsis thaliana GN=At5g54820 PE=4 SV=1

 Score =  236 bits (601), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 150/467 (32%), Positives = 243/467 (52%), Gaps = 24/467 (5%)

Query: 3   DNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDD- 61
           D+   D  S L + L+ +IIS+LP KE  RTS+LS+RWR++ L T  + F ES +V  D 
Sbjct: 2   DSIQQDRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPDI 61

Query: 62  -DNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNF--LVQNCISFAIARDVK 118
            D E ++ +    F   V +W+      +V++F + FS  V F   +   I +A++  VK
Sbjct: 62  TDAEYSRIVAYRSFFCSVDKWVSITQHQVVESFEICFSHLVGFEDKIDALIEYAVSTRVK 121

Query: 119 ELALDFHDPLWPEHGSENHEA-VFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKEL 177
            L +D  +P W  +G  ++   ++ LP  VY    LESL+++ C  + S+F N + L+ L
Sbjct: 122 NLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFDPSKFVNPVLLRSL 181

Query: 178 SLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRY 237
           S+GW++L  +++  LL + P L+SLS+K CW +   DIT    + + LVI+  DF+  + 
Sbjct: 182 SIGWVRL--ENLHSLLSKSPSLQSLSIKNCWGV---DITSMAGQFRELVIEHSDFSYMQC 236

Query: 238 EIAAPNLRFWKYSGTEGMFRVERQN-FLTEVELDFA------LQPDFDEEIGEFLYELLR 290
               P +  +KYSG    F  +  N  +  V LDF       LQ       GE +  ++ 
Sbjct: 237 AFELPRIHSFKYSGELFEFYFDVVNVIIPNVYLDFGEERVYDLQSQSSRISGEVISRIIN 296

Query: 291 QLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSL 350
            L     LTVC ++LQVIP  E+P  +  P+E +HL L   MH  E+ GI  +L +CP+L
Sbjct: 297 DLRAAETLTVCPYILQVIPECEKPSDLLQPMETRHLVLRTKMHTKEFNGIILLLNNCPNL 356

Query: 351 QTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFL 410
           +TL  +I     F        +DP+  W +       +  +L+VV +R F G+  E   L
Sbjct: 357 ETLGFDILTPCPFSATSSDEGIDPKTYWMQKRTC-KSLRKTLKVVVIRNFCGSSNELNVL 415

Query: 411 NYLI----FFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKR 453
            YLI      G+ L+ + LY+ + ++E+ A       +A+ +Q+  +
Sbjct: 416 RYLIRSASGAGDALERVELYVPNGMEESQAM--VVFAKAEMLQRTSK 460

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M1Q1|FB215_ARATH F-box protein At3g62230 OS=Arabidopsis thaliana GN=At3g62230 PE=1 SV=1

 Score =  233 bits (595), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 147/468 (31%), Positives = 230/468 (49%), Gaps = 12/468 (2%)

Query: 1   MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRD 60
           M     VD+ S L++ L+ +IIS L FKEA  TS LS RWRHI   T+ I F E   V  
Sbjct: 1   MDSGSAVDIISTLSDFLLVLIISNLSFKEALSTSRLSTRWRHICRETRNISFREDEIVTF 60

Query: 61  DDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNF--LVQNCISFAIARDVK 118
            D+   +   R+  + ++  W+  +   +V++F L  S    F   V   I FA++++VK
Sbjct: 61  ADDSVARYYQRAALVAYMVGWVNNFTGGVVESFELRLSNSYAFEEGVTTLIEFAVSKNVK 120

Query: 119 ELALDFHDPLWPEH--GSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKE 176
            L LD  +P W  +   ++    +  LP   Y    L +L+LF C    SR      +K 
Sbjct: 121 HLFLDLSEPRWVTNNDAAQLEPGLIKLPESFYKITSLVTLKLFGCRFEPSRLAKPGMVKT 180

Query: 177 LSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR 236
           +   WI+L + S   L+ + P LE L++K CWEI    IT  N RL +LV   C F+  +
Sbjct: 181 MFFRWIRLEMLS--ALIAKTPLLEILNIKNCWEIGLDAITGYNDRLMKLVFKYCSFSAQQ 238

Query: 237 YEIAAPNLRFWKYSGTEGMFRVERQN-FLTEVELDFALQPDFDEEIGEFLYELLRQLEIV 295
             +  PN++ +KY G    F     N  + E  LD+  +  ++   G  +   L  +   
Sbjct: 239 TTLDVPNIQIFKYFGKVYRFEFASANKLMEEAYLDYREESRYNVSAGAIISGFLYSMLSA 298

Query: 296 RVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTI 355
           +  T+C ++LQ+I   E+P  +  P+E + L L     P+E+ GI FML S P L+TL+ 
Sbjct: 299 KTFTICPYVLQLIQECEDPVRLKAPMETRQLVLKTNFEPNEFVGIRFMLNSSPYLETLSF 358

Query: 356 NIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIF 415
            +   R      P  ++DPE  W +N   + C+  +L+ V V  F G   E R L YLI 
Sbjct: 359 QMVGPRPIEEMVP--QIDPEAYWGQNTS-HECLKKTLKKVEVWSFYGGTHELRVLEYLIR 415

Query: 416 FGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY 463
           +G +L+ ++LY    +D+           A R+ +F+  S NL ++ Y
Sbjct: 416 YGRMLERVDLYQPIGLDD--IQLLPIRAAADRVGEFEARSENLVVTFY 461

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 111/405 (27%), Positives = 194/405 (47%), Gaps = 55/405 (13%)

Query: 7   VDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEET 66
           VD  S L + ++  I SY+P + A RTS+LS+RWRH+W  T  + F E   V        
Sbjct: 27  VDSISDLPDAVLQHIFSYIPTELAIRTSVLSKRWRHVWSETPHLSF-EWLKVSP------ 79

Query: 67  KQLHRSHFINFVHQWIGQYNATIVKAFRLV--FSRPVN-FLVQNCISFAIARDVKELALD 123
                      +++ +  Y A+ +K+F L   +S   +   V + I FA++ +V +L+L 
Sbjct: 80  ---------KLINKTLASYTASKIKSFHLCTRYSYEADTHHVNSSIEFAMSHNVDDLSLA 130

Query: 124 FH--DPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGW 181
           F    P +      N +  F      Y +  L+ +EL   ++      ++ +LK LSL  
Sbjct: 131 FRRCSPFY------NFDDCF------YTNSSLKRVELRYVDLMPRCMVSWTSLKNLSLTD 178

Query: 182 IQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDF---NQYRYE 238
             +S +S  E+L  CP LESLSLK C  ++YL+++  +LRL RL I++  +        +
Sbjct: 179 CTMSDESFLEILSGCPILESLSLKFCMSLKYLNLS-KSLRLTRLEIERISYIRAPMLSMQ 237

Query: 239 IAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFA-LQP-----DFD----EEIGEFLYEL 288
           I AP + + +   +E        + LTE  +D +   P     DFD     ++   +  +
Sbjct: 238 IVAPYIHYLRLRDSEAHCTFVDVSSLTEANVDVSTFHPRTCYHDFDPLDPHDLLVMVQTM 297

Query: 289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFMLKSC 347
           L+  + V  LT+   LLQ++  ++ P  + +P L+VK LTL   +      GI  +L++ 
Sbjct: 298 LKTFQKVEKLTLGVNLLQMLSLSKIP-SLPLPMLKVKTLTLETMIIRSVVPGIARLLQNL 356

Query: 348 PSLQTLTI------NIGPGRRFPNYRPPFELDPEKCWTKNIVLYP 386
           P L+ +T+      N        +Y    +L+P++ W  + V++P
Sbjct: 357 PGLKKITVYTTNPCNTEVEPCVNSYLDAQDLNPDQWWRLDDVVFP 401

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 114/446 (25%), Positives = 206/446 (46%), Gaps = 66/446 (14%)

Query: 5   DDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNE 64
           D  D  + + +D++  I+S++P   A RTS+LSRRWRH+W  T  ++             
Sbjct: 25  DGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWCETPCLDI------------ 72

Query: 65  ETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVKELAL 122
             K  H        +Q +  Y A I+ +F+LV     N +  V + I FA++R+V+ L++
Sbjct: 73  --KLKHGE-----TNQTLTSYTAPIITSFKLVMDLNDNTVPQVDSWIEFALSRNVQNLSV 125

Query: 123 DFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELF--------SCNINASRFNNFIAL 174
              D          +   +  P   Y    L+ L++         +C +      ++ +L
Sbjct: 126 FVRD--------FTYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAV------SWKSL 171

Query: 175 KELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-VPNLRLKRLVIDKCDFN 233
           + L+L + Q+  +S+  +L  CP LESL+L  C  +E LD++  PNLR  RL I++    
Sbjct: 172 RNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLR--RLDINR---- 225

Query: 234 QYR----YEIAAPNLRFWKYSGTEGMFRVERQNFLTEVEL----DFALQPDFDEEIGEFL 285
           QYR      I AP++ + + + +     +   + L+E  L    D  L P   +      
Sbjct: 226 QYRRTGPIAIVAPHIYYLRLTYSSTPSTIVDVSSLSEANLNIISDRLLSPLTADRYQTMA 285

Query: 286 YELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFML 344
            E+L +   V+ LTV   +LQ++  AE   G+  P L+V+ LT+          GI+ +L
Sbjct: 286 LEMLSKFHNVKRLTVGETILQILSLAELR-GVPFPTLKVQTLTVKTEFVRSVIPGISRLL 344

Query: 345 KSCPSLQTLTIN-IGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGT 403
           ++ P L+ LT++ +          P   L P++CW     ++P   +S  +  + G    
Sbjct: 345 QNSPGLKKLTLHTLQLSHDIMEMHPLKGLYPDQCWRSTCEVFP---TSKEIYKMLGCNDA 401

Query: 404 MTE--ARFLNYLIFFGNVLQELNLYL 427
            ++  A F+N ++     L+ + ++L
Sbjct: 402 TSKLVASFMNLVLRNAKTLERMVVWL 427

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 189/381 (49%), Gaps = 58/381 (15%)

Query: 8   DMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETK 67
           D+ S+L +D++ +I+SYLP + A +TS+LSRRWRH+W  T  + F      RD  +    
Sbjct: 37  DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFH-----RDRPDAPC- 90

Query: 68  QLHRSHFINFVHQWIGQYNATIVKAFRL-------VFSRP-VNFLVQNCISFAIARDVKE 119
                     +++ + +Y A  + +FR+         SRP  +  + + I+FA++R+V+ 
Sbjct: 91  ----------INRILDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVEN 140

Query: 120 LALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLEL-FSC-----NINASRFNNFIA 173
           L+L               E  +D+P  +Y +  L+ L L F C     ++N     ++ +
Sbjct: 141 LSLYL------------DEDKYDIPEFLYINSSLKQLYLDFGCKKDFISLNPKCSVSWTS 188

Query: 174 LKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFN 233
           LK LSL    +S +SI  +L  CP LESL L  C +++ LD++     +   +  +C   
Sbjct: 189 LKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEITRRCRME 248

Query: 234 QYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFA--------LQPDFDEEIGEFL 285
               ++ AP++R  +   +E    +   + L++ ELD          L+ DF + +   +
Sbjct: 249 P--TQLVAPHIRCLRLINSEKPCALVDVSSLSQAELDITAYAIVDNKLEADFHQTM---V 303

Query: 286 YELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFML 344
            ++L + + V  LT+ +  L+++  AE   G++ P L+ K L L   +  +  +GI  +L
Sbjct: 304 VKMLEKCQNVEKLTLGANFLKMLSLAEL-RGVSFPKLKAKALILETMISRYVIHGIVKVL 362

Query: 345 KSCPSLQTLTIN-IGPGRRFP 364
           ++ P L+ LTI+ +G    +P
Sbjct: 363 QNSPDLKKLTIHPMGSAGSYP 383

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 182/401 (45%), Gaps = 65/401 (16%)

Query: 5   DDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNE 64
           D  D  + + +D++  I+S++P   A RTS+LSRRWRH+W                    
Sbjct: 24  DGADFINYMPDDILHHILSFIPTDLAMRTSVLSRRWRHVWC------------------- 64

Query: 65  ETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVKELAL 122
           ET  L  +     ++Q +  Y A I+ +F+LV     N +  V + I FA++R+V+ L++
Sbjct: 65  ETPCLDITLKHGAMNQTLTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLSV 124

Query: 123 DFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELF--------SCNINASRFNNFIAL 174
              D          +   +  P   Y    L+ L++         +C +      ++ +L
Sbjct: 125 FVRD--------FTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTV------SWKSL 170

Query: 175 KELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-VPNLRLKRLVIDKCDFN 233
           + L+L + Q+  +SI  +L  CP LESL+L  C  +E LD++  PNLR  RL I++    
Sbjct: 171 RNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLR--RLDINQ---- 224

Query: 234 QYR----YEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFA---LQPDFDEEIGEFLY 286
           QYR      I AP++ + + + +     +   + L+E  L      L P   +       
Sbjct: 225 QYRRTGPVAIVAPHIYYLRLTYSSTPSTIVDVSSLSEANLTIISSLLSPLTADGYQTMAL 284

Query: 287 ELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFMLK 345
           E+L +   V+ LTV   LLQ++  AE   G+  P L+V+ LT+          GI+ +L+
Sbjct: 285 EMLSKFHNVKRLTVGETLLQILSLAELR-GVPFPTLKVQTLTVKTEFVRSVIPGISRLLQ 343

Query: 346 SCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYP 386
           + P L+ L  +               L P++CW     ++P
Sbjct: 344 NSPGLKKLRPSTMKMHHLKG------LYPDQCWRSTCEVFP 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 97.4 bits (241), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 184/389 (47%), Gaps = 51/389 (13%)

Query: 7   VDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEET 66
           VD  S L + ++  I+S++P K A  TS+LS+RWRH+W  T  + F       +D   E 
Sbjct: 30  VDSISSLPDVILQHILSFIPTKLAITTSLLSKRWRHVWCDTPSLSF-------NDYRLEA 82

Query: 67  KQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNF-LVQNCISFAIARDVKELALDFH 125
                     F+ + + +Y A+ +  F L  S   N   +++ I FA++R+V  L+LD  
Sbjct: 83  P---------FIDETLTRYTASKMMRFHLHTSLINNVPHLESWIKFAMSRNVDHLSLD-- 131

Query: 126 DPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLS 185
             LW +  ++     F  P   + H+   SL+  +  ++ S     I LK+L L    LS
Sbjct: 132 --LWNQVANK-----FKFP--DFFHIN-SSLKQLTVVLDFSDTMIAICLKKLYLSTCLLS 181

Query: 186 VQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDF---NQYRYEIAAP 242
            +S+  +L  CP LESL+L  C  +  LD++  +LRL+ L I+ C+         +I AP
Sbjct: 182 DESMANILFGCPILESLTLDHCGGLRVLDLS-KSLRLRTLEIN-CNIWVPELTAMQIVAP 239

Query: 243 NLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEI-GEF----LYELLRQLEIVRV 297
           +    +   ++    +   + L E +L+  +   F + I  +F    L ++L +L  V  
Sbjct: 240 HTHCLRLRNSKLPCSLVDVSSLKEAKLNICID-SFSKTIKADFLQVTLLKMLEKLHNVEK 298

Query: 298 LTVCSFLLQVIPHAE---EPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLT 354
           LT+    LQ++  AE    PF M    +VK LTL   +  +   GI  +L++ P L+ LT
Sbjct: 299 LTLGGNFLQILSVAELRGVPFPM---FKVKDLTLETVIFQYVIPGIERVLQNSPDLKKLT 355

Query: 355 INI-----GPGRRFPNYRPPFELDPEKCW 378
           +        PG    ++      + ++CW
Sbjct: 356 LLTKDFYHKPGEYLGDHMDLEGFNLDQCW 384

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXR4|FBL56_ARATH Putative F-box/LRR-repeat protein At3g58880 OS=Arabidopsis thaliana GN=At3g58880 PE=4 SV=1

 Score = 95.9 bits (237), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 193/442 (43%), Gaps = 41/442 (9%)

Query: 7   VDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEET 66
           VD+ S L +DL+  I+S L  KEAA TSILS+RWR++      +EF +S F+  ++ ++T
Sbjct: 2   VDLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFLNPEEGKQT 61

Query: 67  KQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNF-LVQNCISFAIARDVK--ELALD 123
           ++  R  FI+FV + +  +  + ++ F L     V+  L+   I   + R V   +L++D
Sbjct: 62  REGTRQSFIDFVDRVLALHGDSPIRKFSLKCKTGVDLDLLNQWICNVLQRGVLLIDLSMD 121

Query: 124 FHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFS-CNI--NASRFNNFIALKELSLG 180
                        H  +F   + ++    L  L+L S C I       +    LK L+L 
Sbjct: 122 L-----------GHRCMF---IEIFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLD 167

Query: 181 WIQLSVQS-IRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFN--QYRY 237
            +  S    +  LL  CP LE+L+L       Y + TV    LK L I     +   + +
Sbjct: 168 SVSWSDSGQLERLLSACPALEALNLANVHG-SYPNATVSIASLKTLTIKSVSLSGPAHVF 226

Query: 238 EIAAPNLRFWKYSGT-EGMFRVERQNFLTEVELDFALQPDFDEEIG---------EFLYE 287
               PNL    Y+   E  + +    +L E ++ F L     + +            + +
Sbjct: 227 SFDTPNLLCLNYTALFEDDYPLVNLEYLVEAQIKFVLTDRLIKLVSVRKNGLLMLSEVQK 286

Query: 288 LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSC 347
           L+R +  VR L +    LQV+    +   M V   +  L + + M    +  +  +LK+C
Sbjct: 287 LIRGISSVRKLYLSPGTLQVLGQCSQ--AMPVFNNLTFLVIESSMDIR-WQAMPVLLKNC 343

Query: 348 PSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEA 407
           P L+TL I  G      +       D   C ++        +  ++ + +R F+GT+ E 
Sbjct: 344 PRLETLVIKGG----LVHCVAADCGDACTCISREEKGRSLASCPVKRLEIREFQGTLREM 399

Query: 408 RFLNYLIFFGNVLQELNLYLSD 429
             + +  +    L+E+ +Y+ D
Sbjct: 400 EMIKHFYYCFLCLKEMEIYVKD 421

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
224124282	463	predicted protein [Populus trichocarpa]	0.984	0.984	0.497	1e-129
224115268	463	predicted protein [Populus trichocarpa]	0.984	0.984	0.467	1e-121
359494023	730	PREDICTED: F-box protein At3g62230-like	0.879	0.557	0.444	1e-97
255564005	414	conserved hypothetical protein [Ricinus	0.868	0.971	0.406	1e-95
357450393	456	hypothetical protein MTR_2g048140 [Medic	0.969	0.984	0.401	8e-89
297853526	479	F-box family protein [Arabidopsis lyrata	0.920	0.889	0.344	3e-65
297817568	463	hypothetical protein ARALYDRAFT_907795 [	0.974	0.974	0.326	5e-63
15223532	479	F-box protein [Arabidopsis thaliana] gi|	0.920	0.889	0.339	1e-62
357492277	391	F-box protein [Medicago truncatula] gi|3	0.779	0.923	0.372	2e-62
297792945	476	hypothetical protein ARALYDRAFT_331822 [	0.924	0.899	0.332	9e-61

>gi|224124282|ref|XP_002319292.1| predicted protein [Populus trichocarpa] gi|222857668|gb|EEE95215.1| predicted protein [Populus trichocarpa]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/460 (49%), Positives = 311/460 (67%), Gaps = 4/460 (0%)

Query: 6   DVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEE 65
           + DMFS L + L+ +I S+L FKEAART ILS++W +IW   + ++F E+ FV+ D++EE
Sbjct: 4   NTDMFSNLPSSLLIIIASFLSFKEAARTCILSKQWLNIWREVENVDFDENNFVKLDESEE 63

Query: 66  TKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLV--QNCISFAIARDVKELALD 123
            +++ R  FINF  Q+I  ++  ++K      S+P NFLV  QN + FA + +   L LD
Sbjct: 64  NQKVQREVFINFARQFIANHSQQVIKTLGFRCSKPGNFLVDMQNIVMFATSHNATGLRLD 123

Query: 124 FHDPLWPEHGSENHEAVFDLPMHVYGH-VGLESLELFSCNINASRFNNFIALKELSLGWI 182
           F DP W E    NHEAV +LP HVY H   LESL+LFSC  +AS+F NF A+K LSLGWI
Sbjct: 124 FSDPTWREDAIMNHEAVSELPSHVYEHGQALESLKLFSCRFDASKFTNFSAIKSLSLGWI 183

Query: 183 QLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAP 242
            +++ SI  +L  CP LE+L LKKCW +EY +++ P LRL+ LV+DKCD       I  P
Sbjct: 184 NINIGSILVILESCPLLETLHLKKCWNLEYFEVSKPGLRLQNLVLDKCDIRHEWLAIEGP 243

Query: 243 NLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCS 302
             +F+KYSG  G F +E Q  + E ELDF +Q +F EE+G FLY+LL++L   R+LTVCS
Sbjct: 244 RFQFFKYSGKVGQFLLENQRDMVEAELDFGMQTEF-EEVGAFLYDLLQELFAARILTVCS 302

Query: 303 FLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRR 362
             LQ+IP  +EP G+  PL+V+ L L   +H +EY GI FML+S P L+TLTI+IGP R 
Sbjct: 303 VFLQIIPSGDEPLGLQAPLDVRKLILKTALHSNEYCGIKFMLRSSPRLETLTIDIGPARI 362

Query: 363 FPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQE 422
           FP+Y PP+  DPE+ W++N  +  CV  +LRVVNV+GFKGT  E   L YL+ FG  ++E
Sbjct: 363 FPDYEPPYPFDPEELWSRNFQVEFCVIETLRVVNVKGFKGTRNELYVLRYLLHFGRAMEE 422

Query: 423 LNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISI 462
           LNLY S+E  +NG NRE Y+GRAQ +  F +AS N+SIS+
Sbjct: 423 LNLYASNEGGDNGENREFYMGRAQIVLGFYKASRNVSISV 462

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115268|ref|XP_002316987.1| predicted protein [Populus trichocarpa] gi|222860052|gb|EEE97599.1| predicted protein [Populus trichocarpa]

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/460 (46%), Positives = 310/460 (67%), Gaps = 4/460 (0%)

Query: 6   DVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEE 65
           ++DM S L + L+ +I  +L FKEAARTS+LS++W +IW     I+F E+FFV+ D+ EE
Sbjct: 4   NIDMISNLPSSLLIIIAGFLSFKEAARTSVLSKQWLNIWRDAMHIQFNENFFVKSDEPEE 63

Query: 66  TKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVKELALD 123
            +++ R  FINF  Q+I  Y    +K   L  S+P +FL  +QN + FA +R+V+EL LD
Sbjct: 64  NQKVQREVFINFARQFIANYPPQDIKTLGLTCSKPGDFLADMQNIVMFASSRNVRELGLD 123

Query: 124 FHDPLWPEHGSENHEAVFDLPMHVYGH-VGLESLELFSCNINASRFNNFIALKELSLGWI 182
           F DP W EH  ENH+A F+LP+ VY H   L+S++LFSC+ + S F+NF ALK LSLGWI
Sbjct: 124 FSDPTWREHALENHQAAFELPLLVYEHGQALKSMKLFSCSFDVSNFSNFCALKTLSLGWI 183

Query: 183 QLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAP 242
           ++++ SI  +L  CP LESLSLKKCW+I   +I+ P  RLK LVI++CD       I  P
Sbjct: 184 KINMGSILAILESCPLLESLSLKKCWDIVSFEISKPGSRLKSLVIEECDIADDFVLIEGP 243

Query: 243 NLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCS 302
            L+F+K+SG  G F ++ Q+ L + ELDF  +  FDE IG FL +LL  L   +VLTVCS
Sbjct: 244 KLQFFKFSGNVGEFLLDDQSDLVKAELDFETETAFDE-IGLFLCDLLEDLFAAQVLTVCS 302

Query: 303 FLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRR 362
             LQ++P   EP G+   ++V++L L   +H +E+ GI FML+SCP L+ LTI+IGP   
Sbjct: 303 VFLQIVPSGNEPLGLQAQIDVRYLILKTALHINEFCGIRFMLRSCPHLEILTIDIGPANI 362

Query: 363 FPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQE 422
           FP Y  P+  +P++ W++++++  CVT++L+ VNV+GFKG M E   L YL+ FG+ ++E
Sbjct: 363 FPEYGAPYPFNPQEFWSEDLLVEECVTTTLKAVNVKGFKGMMNELNVLKYLLLFGHAMEE 422

Query: 423 LNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISI 462
           L LY+S+E   NG  RE Y+ RA ++ +F +AS NLSI++
Sbjct: 423 LTLYVSNEAGSNGETREFYMERALQVLEFNKASRNLSIAV 462

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494023|ref|XP_002281469.2| PREDICTED: F-box protein At3g62230-like [Vitis vinifera]

 Score =  363 bits (932), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 184/414 (44%), Positives = 265/414 (64%), Gaps = 7/414 (1%)

Query: 6   DVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEE 65
           + DMFS L + ++++I+S+LPF +AARTS+LS+RWRHIW +T +IEF ESFFV+ +++ E
Sbjct: 9   NADMFSFLPDHVISLILSFLPFIDAARTSVLSKRWRHIWHATVRIEFDESFFVKREESTE 68

Query: 66  TKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVKELALD 123
            ++L R  FI+F+ QW+  Y   +V+ F L F+ P  +   ++NC+ FAI R  + L LD
Sbjct: 69  KRELARCGFIDFMRQWMLNYKEPVVETFSLSFTNPGEYRLDMENCLRFAILRGTRGLYLD 128

Query: 124 FHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQ 183
           F DP W E   + H  +F LP  VY H  LESL+LFSC  + S F+ F  LK+LSLGW++
Sbjct: 129 FADPSWGEDEFDPHLRLFQLPTFVYKHKVLESLKLFSCRFDVSEFSAFSVLKDLSLGWVE 188

Query: 184 LSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPN 243
           +   S++ LL+ CP LE L LK CW +   DI+ PNLRL+RL+IDKC  + +   + A  
Sbjct: 189 VRSSSLKALLMNCPLLEGLCLKNCWNLGDPDISGPNLRLRRLIIDKCSIDNHII-LMAQK 247

Query: 244 LRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEE--IGEFLYELLRQLEIVRVLTVC 301
           L+++KYSG    F +E Q  + E ELDF L+ +FD     G+ L ++LR +     LTVC
Sbjct: 248 LQYFKYSGLVKSFLLEDQPDVEEAELDFGLESEFDNSGYCGDTLQDILRNI-YSNTLTVC 306

Query: 302 SFLLQVIPHAEEPFGMTVPL-EVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPG 360
           S++LQ +P  EEP  +   L +++HL L   MH +E YGI+F+LKSCP L  LTI++GP 
Sbjct: 307 SYMLQELPSGEEPLRLYPYLDDMRHLILKTSMHSYELYGISFLLKSCPGLDMLTIDLGPA 366

Query: 361 RRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLI 414
           R F +Y PPF++     W ++I    CV  +L+VV V GFKG   E   L  ++
Sbjct: 367 RIFADYEPPFQIQSHVFWAQHIPFIDCVRETLKVVEVNGFKGEPNEIELLQNVL 420

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564005|ref|XP_002523002.1| conserved hypothetical protein [Ricinus communis] gi|223537814|gb|EEF39432.1| conserved hypothetical protein [Ricinus communis]

 Score =  356 bits (914), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 188/463 (40%), Positives = 284/463 (61%), Gaps = 61/463 (13%)

Query: 3   DNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDD 62
           D+++VD+F++LT+ L+ +I+SYLPF+EAART ILS++W  +W  T  +EF E+FFV+ ++
Sbjct: 10  DSNNVDVFNRLTSSLLVLIVSYLPFREAARTCILSKQWVDVWRETTNLEFNENFFVKPEE 69

Query: 63  NEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVKEL 120
            +E + + R+ FI+FV Q++ QY    ++ F L  S P  FL  ++N + FAI+R+V+EL
Sbjct: 70  TKENQMILRNSFIDFVRQFVAQYPQKGIQRFALACSDPQAFLSDIRNFVVFAISRNVREL 129

Query: 121 ALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLG 180
            LDF DP W E   ++H+  F+LP+ +Y H  L  L+LFSC  +ASRF NF  LK +SLG
Sbjct: 130 ELDFSDPTWREDSLDSHQPAFELPLQIYQHKRLVLLKLFSCRFDASRFTNFSTLKSVSLG 189

Query: 181 WIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIA 240
           W  +SV SI+ LLV CP +ESLSLKKCW++E+ +I++PNLRLK LV+D C+F Q  + I 
Sbjct: 190 WTGISVVSIKALLVNCPLIESLSLKKCWDLEHFEISLPNLRLKNLVLDNCNFIQDWFCIE 249

Query: 241 APNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTV 300
            P L F KYSG  G F +  Q  + E +LDF ++ +FD ++G  LY+ L++   V++LTV
Sbjct: 250 GPKLEFLKYSGRIGHFHMSNQRNMVEADLDFGMELEFD-DVGSLLYDFLQEFYAVQILTV 308

Query: 301 CSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPG 360
           CS LLQ       PF                 +PHE++                      
Sbjct: 309 CSVLLQ---DYAPPF---------------RFNPHEFW---------------------- 328

Query: 361 RRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVL 420
                             +K++ +  C+ SSL+VVNV+GF+GT++E   L Y+I FG+ L
Sbjct: 329 ------------------SKDLRIQRCIRSSLKVVNVKGFRGTLSELYVLRYIICFGDQL 370

Query: 421 QELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY 463
           +ELNLY+++E  ENG NR+TY+ R + + +F +    L +S++
Sbjct: 371 RELNLYVANEEGENGENRDTYMERVELLLKFIKRHQQLHVSVF 413

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450393|ref|XP_003595473.1| hypothetical protein MTR_2g048140 [Medicago truncatula] gi|355484521|gb|AES65724.1| hypothetical protein MTR_2g048140 [Medicago truncatula]

 Score =  333 bits (855), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 185/461 (40%), Positives = 276/461 (59%), Gaps = 12/461 (2%)

Query: 5   DDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNE 64
           D++++FS +   L+  I+S+LP +EA RT IL ++W  IW S + I+F E+FFV D  ++
Sbjct: 4   DNMELFSSILKPLLLAIVSFLPSQEATRTPILLQKWSKIWQSEENIDFNENFFV-DSTSD 62

Query: 65  ETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRP--VNFLVQNCISFAIARDVKELAL 122
           E KQ  R  FINF+  WI  + +  +  F L  S P      ++ C++F I R VKEL L
Sbjct: 63  ENKQEQRKVFINFITSWIAHFPSRAINRFSLTVSNPQTCGETIERCVAFTIQRGVKELIL 122

Query: 123 DFHDPLWPEHGSENHEAVFDLPMHVYG-HVGLESLELFSCNINASRFNNFIALKELSLGW 181
           DF DP W ++  +   A+F LP HVY   + LESL+L+SC  +A  F NF ALK+LSLGW
Sbjct: 123 DFPDPKWEDNDFDGKHALFQLPTHVYQLGLSLESLKLYSCGFDAQDFLNFGALKDLSLGW 182

Query: 182 IQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAA 241
           I++ ++++++LL  C  +ESL+LKKCW +   D+    L L RLV++KCD   + +   A
Sbjct: 183 IEVKIKTLKKLLSICRTIESLNLKKCWNLANFDLGDEPLGLTRLVVNKCDSEYFIFN--A 240

Query: 242 PNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301
           PNL+++KYSG      +  +  + EV++DF+ + +F+E  G  L ++L       +LTVC
Sbjct: 241 PNLKYFKYSGVVFTSDINVRA-IEEVDIDFSQESEFNER-GNELCQILHDFSAANILTVC 298

Query: 302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGR 361
           S+LLQV+P  +EP  M   L VKHLTL   MH +E  G  FML SCP L+ L ++I P  
Sbjct: 299 SYLLQVVPSGDEPVKMQSALNVKHLTLKTKMHSYELCGFEFMLNSCPLLEKLILDISPQL 358

Query: 362 RFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQ 421
            F +Y  P+++D +K W    V   C+ +SL+VV V G + T  E     +L+  G VL+
Sbjct: 359 IFEDYTLPYQVDLKKFWQTRRVFPECLKNSLKVVEVIGLRATNEELMTCCFLM-QGKVLE 417

Query: 422 ELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISI 462
           ++N+ L +E D      E   G AQ + + ++ S NL ISI
Sbjct: 418 QINIKLWNEDD---GKEEFRRGSAQLLVKAQKGSKNLQISI 455

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853526|ref|XP_002894644.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297340486|gb|EFH70903.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 241/456 (52%), Gaps = 30/456 (6%)

Query: 1   MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRD 60
           +A +  +D  S L + ++  IISYL FKE  RTS+L++RWR++   T+ I F ES +V  
Sbjct: 6   IASSIQLDGLSNLPDVILITIISYLSFKECLRTSVLAKRWRYLCRETRNIAFKESEYV-- 63

Query: 61  DDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVK 118
           D +   K   R  F++++ QWI +Y+   ++   + FS P  F+  +Q+ I FA++R VK
Sbjct: 64  DHSVSDKISKRISFVHYMRQWISRYHGRYIETLEINFSIPSGFVAEIQSLIEFAVSRQVK 123

Query: 119 ELALDFHDPLW--PEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKE 176
            L LDF DP W      S     V  LP+ VY    LESL+++SC  + S+F+N    ++
Sbjct: 124 NLVLDFKDPSWISTSWASRYDHVVVQLPVCVYSLTTLESLKIYSCGFDPSKFSNSRLPRK 183

Query: 177 LSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR 236
           LS+GWI+L    +  LL   P L+SLSL  CW +E  +I      +K  V D+CDF+ + 
Sbjct: 184 LSIGWIKLP--EVDSLLSNSPTLKSLSLDYCWGVEIKNIAGD---MKEFVFDRCDFSSFM 238

Query: 237 Y-EIAAPNLRFWKYSGTEGMFRVERQNF-LTEVELDFALQPDFDEEI------GEFLYEL 288
                 PN+  +KYSG    F V+R N  + +V LDF  + ++D+        G  L   
Sbjct: 239 ACSFDLPNVEIFKYSGQILSFDVKRMNMSIKDVYLDFTAEGEYDKRNQRTKLEGSVLSAF 298

Query: 289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCP 348
           L  L   R L+VC +LLQ I   E+P  +  P+E +HL L   +H  E+ GI  +L +CP
Sbjct: 299 LNNLRGARTLSVCPYLLQTIQECEDPLDLLRPMETQHLVLRTRLHVTEFKGIRLLLDNCP 358

Query: 349 SLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEAR 408
           +L+ LT +I     F   +  + + P   W KN+  Y  +  +L+VV VR F+G   E  
Sbjct: 359 NLEMLTFDIFNRSIFSYNKSYYGVGPRSYWKKNLT-YKSLPKTLKVVVVRNFRGRFGELN 417

Query: 409 FLNYLIFFGN----------VLQELNLYLSDEVDEN 434
            L +LI  G           +L+ + LY+   + E+
Sbjct: 418 VLKFLIQSGRGRWPGREHGPMLERVELYMHSSMAES 453

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817568|ref|XP_002876667.1| hypothetical protein ARALYDRAFT_907795 [Arabidopsis lyrata subsp. lyrata] gi|297322505|gb|EFH52926.1| hypothetical protein ARALYDRAFT_907795 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (633), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 243/468 (51%), Gaps = 17/468 (3%)

Query: 4   NDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDN 63
           N  VD+ S L++ L+ +IIS+LPFK+  +TS+LS+RWR+++   K I F ES  V    N
Sbjct: 5   NPPVDIISTLSDCLLVLIISFLPFKDVLKTSMLSKRWRYLYREVKNISFRESEMVTFAGN 64

Query: 64  EETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNF--LVQNCISFAIARDVKELA 121
              +   R+  + ++  W+  +   ++++F L  S   +F   V   I FA++++VK L 
Sbjct: 65  HIDQYYQRAQLVAYMVGWVDNFTGGVIESFELCLSNSYSFEQGVTRLIEFAVSKNVKHLI 124

Query: 122 LDFHDPLW--PEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSL 179
           LD  +  W   +  +     +  +P   Y    L +L+LF C  N SR  N   +K L  
Sbjct: 125 LDLSERRWRVRDDAAALERGLIQVPESFYKLTTLVTLKLFGCRFNPSRLANPGLVKILCF 184

Query: 180 GWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEI 239
            WI+L  ++I  L+ + PFLE+L +K CWE+    IT  N R++++V   C F+  +  +
Sbjct: 185 RWIRL--ENISALIAKAPFLETLIMKNCWEVGLEAITGFNDRVRKVVFKNCVFSVEKSTL 242

Query: 240 AAPNLRFWKYSGTEGMFR-VERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVL 298
             PN++ +KY G    F  V     + E  LDF    D++   G  L  LL  L   R  
Sbjct: 243 DVPNIQIFKYFGKVHHFELVSAIRGMEEAYLDFGEAIDYNGSTGSQLCNLLYHLRSARTF 302

Query: 299 TVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG 358
           T+C +LLQ+I  +E+   +   +E + L L + + P+E+ GI FM+ SCP L+ L+  I 
Sbjct: 303 TICPYLLQLIQESEDSVRLKERMETRQLVLKSALEPNEFIGIRFMINSCPYLEILSFQIV 362

Query: 359 PGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGN 418
             R      P F  DPE  W  NI  + C+  +L+ V V  F G   E   L YLI +G 
Sbjct: 363 DPRLIDMMVPQF--DPEAYWMNNIS-HKCLKRTLKKVEVWSFSGGTYELHVLKYLIRYGR 419

Query: 419 VLQELNLYLSDEVDENGANRETYLGRAQR---MQQFKRASVNLSISIY 463
           VL+ ++LYL   ++E+    +    RA       +F+ AS NL+IS++
Sbjct: 420 VLERVDLYLPIGLNED----QMLTARAAADTVGTEFEAASSNLNISLH 463

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15223532|ref|NP_176035.1| F-box protein [Arabidopsis thaliana] gi|75268371|sp|Q9C7X8.1|FBL33_ARATH RecName: Full=Putative F-box/LRR-repeat protein At1g56400 gi|12323022|gb|AAG51499.1|AC058785_2 hypothetical protein [Arabidopsis thaliana] gi|332195266|gb|AEE33387.1| F-box protein [Arabidopsis thaliana]

 Score =  246 bits (629), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 239/456 (52%), Gaps = 30/456 (6%)

Query: 1   MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRD 60
           +A +   D  S L + L+ +IIS L FKE  RTS+L++RWR++   T+ I F E+ +V  
Sbjct: 6   IASSIQQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRWRYLCRETRNISFKETEYV-- 63

Query: 61  DDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVK 118
           D     K+  R  F  ++ QW+ +Y+   ++   + FS P +FL  V++ I FA++R VK
Sbjct: 64  DHFVSDKRSKRVSFAAYMCQWVSRYHGRYIETLEIYFSIPSDFLAAVESLIEFAVSRQVK 123

Query: 119 ELALDFHDPLW--PEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKE 176
            L LDF DP W      S        LP+ VY    LESL+++SC  + S+F+N    ++
Sbjct: 124 NLVLDFSDPSWISTSCASRYDYVCVQLPVCVYSLTTLESLKIYSCGFDPSKFSNSRLPRK 183

Query: 177 LSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR 236
           LS+GWI+L+   +  LL+  P L+SLS+  CW IE  +I      +K  V + CDF+ + 
Sbjct: 184 LSIGWIKLT--DVESLLLNSPTLKSLSINYCWGIEIRNIAGD---MKEFVFESCDFSSFM 238

Query: 237 YEI-AAPNLRFWKYSGTEGMFRVERQNF-LTEVELDFALQPDFDEEI------GEFLYEL 288
                 PN+  +KYSG    F V+R N  + +V LDF  +  +++        G  L   
Sbjct: 239 VCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYEDRNQRTKLEGSVLSAF 298

Query: 289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCP 348
           L  L   R L+VC +LLQ I   E+PF +  P+E +HL L   +H  E+ GI  +L +CP
Sbjct: 299 LNNLRGARTLSVCPYLLQTIQECEDPFDLLRPMETQHLVLRTRLHVMEFKGIKLLLDNCP 358

Query: 349 SLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEAR 408
           +L+TLT +I     F   +  + + P   W KN+  Y  +  +L+VV VR F G   E  
Sbjct: 359 NLETLTFDIFSRSLFSYNKSYYGVGPRSYWKKNLT-YKSLPKTLKVVVVRNFTGRFGELN 417

Query: 409 FLNYLIFFGN----------VLQELNLYLSDEVDEN 434
            L +LI  G           +L+ + LY+   + E+
Sbjct: 418 VLKFLIQSGRGRWPGREHGPMLERVELYMDSSMAES 453

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492277|ref|XP_003616427.1| F-box protein [Medicago truncatula] gi|355517762|gb|AES99385.1| F-box protein [Medicago truncatula]

 Score =  246 bits (628), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/400 (37%), Positives = 216/400 (54%), Gaps = 39/400 (9%)

Query: 7   VDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEET 66
           +D FS L + L+++I+S LPFK+A +TS LS+ W ++   T+ IEF E FF++ D   E 
Sbjct: 4   IDRFSLLHDSLLSIIVSSLPFKDAVKTSTLSKDWENVCKLTRNIEFNELFFIKFDQPHEI 63

Query: 67  KQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVKELALDF 124
               R  F++F+ + I  +    +  F L  S    F   +  CI FAI  +VK+L LDF
Sbjct: 64  VHSQRMAFLDFMKKGIENHGENAIDKFSLTMSAHNVFSEDIDRCIRFAIRNEVKDLELDF 123

Query: 125 HDPLW--PEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWI 182
             P W   E    N  A  DL  +VY + GL+SL+L+SC+ +AS   NF +LKE+SLG++
Sbjct: 124 TSPTWNKDEFYYNNFVASVDLSSYVYEYSGLQSLKLYSCDFSASEMVNFHSLKEISLGFM 183

Query: 183 QLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAP 242
           ++S+ +I  LL  C  LESL+  KCW ++   +    L LK+LVI++C F    + I AP
Sbjct: 184 RVSICAIEALLTNCEMLESLNFYKCWSLDEFILKGEYLGLKKLVINRCHFKSSTFRINAP 243

Query: 243 NLRFWKYSGTEGMFRVERQN-FLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301
           NL+ + Y G+  +F ++ Q+  L EV LDF L+         +L++LL+ L   RV+TVC
Sbjct: 244 NLKVFDYHGS--LFDIDIQSPALDEVNLDFPLELGCQSHGSYYLHKLLKDLPSPRVMTVC 301

Query: 302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGR 361
           S+ LQ                                GI FML SCP+L+ LTI I   R
Sbjct: 302 SYWLQ--------------------------------GITFMLNSCPNLEHLTIEIVEKR 329

Query: 362 RFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFK 401
               + P F + PEK W   I  Y CV S L+ V ++GFK
Sbjct: 330 YMNFFEPVFPIIPEKYWIDTIEAYKCVKSHLKKVEIKGFK 369

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792945|ref|XP_002864357.1| hypothetical protein ARALYDRAFT_331822 [Arabidopsis lyrata subsp. lyrata] gi|297310192|gb|EFH40616.1| hypothetical protein ARALYDRAFT_331822 [Arabidopsis lyrata subsp. lyrata]

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 151/454 (33%), Positives = 237/454 (52%), Gaps = 26/454 (5%)

Query: 3   DNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDD 62
           D+   D  S L + L+ VIIS+LPFKE  RTS LSRRWR++   T+ + F ES FV    
Sbjct: 2   DSIQQDRLSSLPDVLLIVIISFLPFKECVRTSALSRRWRYLCQETRNLSFRESDFVSPYI 61

Query: 63  NEETKQLHR-SHFINFVHQWIGQYNATIVKAFRLVFSRPVNF--LVQNCISFAIARDVKE 119
             E  +    + F +F   W+ +    +V++F + FS PV F   ++  I +A+++ VK 
Sbjct: 62  TGEYSRFAACASFFSFADNWLSRIQDQVVESFEICFSNPVGFEHKIEALIEYAVSKRVKN 121

Query: 120 LALDFHDPLWPEHGSENHEAV------FDLPMHVYGHVGLESLELFSCNINASRFNNFIA 173
           L +D  +P W  +   +   V        LP  VY    LESL+++ C  + SRF N + 
Sbjct: 122 LVIDLSNPAWRNYNDISSVCVSYLHFIVTLPKSVYSLTTLESLKIYGCKFDPSRFTNPVL 181

Query: 174 LKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFN 233
           L+ LS+GW++L  ++++ LL +   L SLS+K+CW +   D+T    + + LV++  DF+
Sbjct: 182 LRRLSIGWMRL--ENLQSLLSKATSLLSLSIKECWGV---DMTWMAGQFRELVLENLDFS 236

Query: 234 QYRYEIAAPNLRFWKYSGTEGMFRVERQN-FLTEVELDFALQPDFDEEI------GEFLY 286
             +     P +   KYSG    F  +  N  + +V LDF  + ++D+        GE + 
Sbjct: 237 YMQCSFELPRIHSLKYSGQVFDFYFDIMNVIIPKVYLDFGEEREYDQPTQSTRISGEVIS 296

Query: 287 ELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKS 346
            +L  L     L VC ++LQ I   ++PF M  P+E +HL L   M   E  GI  +LK+
Sbjct: 297 RILNDLRAASTLAVCPYILQTIRECKKPFYMLQPMETRHLVLRTKMSTKELNGIIILLKN 356

Query: 347 CPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTE 406
           CP+L+TL+  I P R F        +DP+  W +N      +  +L+VV VR F G+  E
Sbjct: 357 CPNLETLSFEILPSRPFQRNSSYEGIDPKTFWMQNRTC-ESLRKTLKVVVVRDFGGSSNE 415

Query: 407 ARFLNYLIFF----GNVLQELNLYLSDEVDENGA 436
              L YLI      GN L+ + LY+ + ++E+ A
Sbjct: 416 LNVLRYLIRLASGGGNALERVELYVPNGMEESQA 449

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	463
TAIR|locus:2010708	479	AT1G56400 "AT1G56400" [Arabido	0.883	0.853	0.356	8.8e-63
TAIR|locus:2160205	472	AT5G54820 [Arabidopsis thalian	0.948	0.930	0.326	1.9e-60
TAIR|locus:2098088	461	DAF1 "AT3G62230" [Arabidopsis	0.982	0.986	0.317	4.5e-59
TAIR|locus:504956009	271	AT2G17305 "AT2G17305" [Arabido	0.375	0.642	0.340	1.8e-34
TAIR|locus:2088882	465	AT3G28410 "AT3G28410" [Arabido	0.714	0.711	0.256	2.5e-22
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.699	0.710	0.261	6.6e-20
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.710	0.683	0.28	2.5e-19
TAIR|locus:2037578	458	AT1G78750 "AT1G78750" [Arabido	0.848	0.858	0.251	2.8e-19
TAIR|locus:2099019	457	AT3G58860 "AT3G58860" [Arabido	0.863	0.875	0.251	7.9e-19
TAIR|locus:2099054	454	AT3G58880 "AT3G58880" [Arabido	0.870	0.887	0.254	1e-18

TAIR|locus:2010708 AT1G56400 "AT1G56400" [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 153/429 (35%), Positives = 232/429 (54%)

Query:     1 MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRD 60
             +A +   D  S L + L+ +IIS L FKE  RTS+L++RWR++   T+ I F E+ +V  
Sbjct:     6 IASSIQQDRLSNLPDVLLIMIISCLSFKECIRTSVLAKRWRYLCRETRNISFKETEYV-- 63

Query:    61 DDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVK 118
             D     K+  R  F  ++ QW+ +Y+   ++   + FS P +FL  V++ I FA++R VK
Sbjct:    64 DHFVSDKRSKRVSFAAYMCQWVSRYHGRYIETLEIYFSIPSDFLAAVESLIEFAVSRQVK 123

Query:   119 ELALDFHDPLWPEHG-SENHEAV-FDLPMHVYGHVGLESLELFSCNINASRFNNFIALKE 176
              L LDF DP W     +  ++ V   LP+ VY    LESL+++SC  + S+F+N    ++
Sbjct:   124 NLVLDFSDPSWISTSCASRYDYVCVQLPVCVYSLTTLESLKIYSCGFDPSKFSNSRLPRK 183

Query:   177 LSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR 236
             LS+GWI+L+   +  LL+  P L+SLS+  CW IE  +I      +K  V + CDF+ + 
Sbjct:   184 LSIGWIKLT--DVESLLLNSPTLKSLSINYCWGIEIRNIAGD---MKEFVFESCDFSSFM 238

Query:   237 YE-IAAPNLRFWKYSGTEGMFRVERQNF-LTEVELDFA---LQPDFDEEI---GEFLYEL 288
                   PN+  +KYSG    F V+R N  + +V LDF    L  D ++     G  L   
Sbjct:   239 VCCFDLPNVEIFKYSGQILSFDVKRMNMSIKDVILDFTAEGLYEDRNQRTKLEGSVLSAF 298

Query:   289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCP 348
             L  L   R L+VC +LLQ I   E+PF +  P+E +HL L   +H  E+ GI  +L +CP
Sbjct:   299 LNNLRGARTLSVCPYLLQTIQECEDPFDLLRPMETQHLVLRTRLHVMEFKGIKLLLDNCP 358

Query:   349 SLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEAR 408
             +L+TLT +I     F   +  + + P   W KN+  Y  +  +L+VV VR F G   E  
Sbjct:   359 NLETLTFDIFSRSLFSYNKSYYGVGPRSYWKKNLT-YKSLPKTLKVVVVRNFTGRFGELN 417

Query:   409 FLNYLIFFG 417
              L +LI  G
Sbjct:   418 VLKFLIQSG 426

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2160205 AT5G54820 [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 152/465 (32%), Positives = 246/465 (52%)

Query:     3 DNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDD- 61
             D+   D  S L + L+ +IIS+LP KE  RTS+LS+RWR++ L T  + F ES +V  D 
Sbjct:     2 DSIQQDRLSSLPDILLIMIISFLPLKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPDI 61

Query:    62 -DNEETKQL-HRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNF--LVQNCISFAIARDV 117
              D E ++ + +RS F + V +W+      +V++F + FS  V F   +   I +A++  V
Sbjct:    62 TDAEYSRIVAYRSFFCS-VDKWVSITQHQVVESFEICFSHLVGFEDKIDALIEYAVSTRV 120

Query:   118 KELALDFHDPLWPEHGSENHEA-VFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKE 176
             K L +D  +P W  +G  ++   ++ LP  VY    LESL+++ C  + S+F N + L+ 
Sbjct:   121 KNLVVDLSNPSWRSNGDISYRHFMYTLPKSVYSLTTLESLKIYGCKFDPSKFVNPVLLRS 180

Query:   177 LSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR 236
             LS+GW++L  +++  LL + P L+SLS+K CW +   DIT    + + LVI+  DF+  +
Sbjct:   181 LSIGWVRL--ENLHSLLSKSPSLQSLSIKNCWGV---DITSMAGQFRELVIEHSDFSYMQ 235

Query:   237 YEIAAPNLRFWKYSGTEGMFRVERQN-FLTEVELDFA------LQPDFDEEIGEFLYELL 289
                  P +  +KYSG    F  +  N  +  V LDF       LQ       GE +  ++
Sbjct:   236 CAFELPRIHSFKYSGELFEFYFDVVNVIIPNVYLDFGEERVYDLQSQSSRISGEVISRII 295

Query:   290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPS 349
               L     LTVC ++LQVIP  E+P  +  P+E +HL L   MH  E+ GI  +L +CP+
Sbjct:   296 NDLRAAETLTVCPYILQVIPECEKPSDLLQPMETRHLVLRTKMHTKEFNGIILLLNNCPN 355

Query:   350 LQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARF 409
             L+TL  +I     F        +DP+  W +       +  +L+VV +R F G+  E   
Sbjct:   356 LETLGFDILTPCPFSATSSDEGIDPKTYWMQKRTC-KSLRKTLKVVVIRNFCGSSNELNV 414

Query:   410 LNYLIFF----GNVLQELNLYLSDEVDENGANRETYLGRAQRMQQ 450
             L YLI      G+ L+ + LY+ + ++E+ A       +A+ +Q+
Sbjct:   415 LRYLIRSASGAGDALERVELYVPNGMEESQAM--VVFAKAEMLQR 457

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2098088 DAF1 "AT3G62230" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 149/469 (31%), Positives = 232/469 (49%)

Query:     1 MADNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRD 60
             M     VD+ S L++ L+ +IIS L FKEA  TS LS RWRHI   T+ I F E   V  
Sbjct:     1 MDSGSAVDIISTLSDFLLVLIISNLSFKEALSTSRLSTRWRHICRETRNISFREDEIVTF 60

Query:    61 DDNEETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVK 118
              D+   +   R+  + ++  W+  +   +V++F L  S    F   V   I FA++++VK
Sbjct:    61 ADDSVARYYQRAALVAYMVGWVNNFTGGVVESFELRLSNSYAFEEGVTTLIEFAVSKNVK 120

Query:   119 ELALDFHDPLWPEHG--SENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKE 176
              L LD  +P W  +   ++    +  LP   Y    L +L+LF C    SR      +K 
Sbjct:   121 HLFLDLSEPRWVTNNDAAQLEPGLIKLPESFYKITSLVTLKLFGCRFEPSRLAKPGMVKT 180

Query:   177 LSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR 236
             +   WI+L + S   L+ + P LE L++K CWEI    IT  N RL +LV   C F+  +
Sbjct:   181 MFFRWIRLEMLSA--LIAKTPLLEILNIKNCWEIGLDAITGYNDRLMKLVFKYCSFSAQQ 238

Query:   237 YEIAAPNLRFWKYSGTEGMFRVERQN-FLTEVELDFALQPDFDEEIGEFLYELLRQLEIV 295
               +  PN++ +KY G    F     N  + E  LD+  +  ++   G  +   L  +   
Sbjct:   239 TTLDVPNIQIFKYFGKVYRFEFASANKLMEEAYLDYREESRYNVSAGAIISGFLYSMLSA 298

Query:   296 RVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTI 355
             +  T+C ++LQ+I   E+P  +  P+E + L L     P+E+ GI FML S P L+TL+ 
Sbjct:   299 KTFTICPYVLQLIQECEDPVRLKAPMETRQLVLKTNFEPNEFVGIRFMLNSSPYLETLSF 358

Query:   356 N-IGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLI 414
               +GP R      P  ++DPE  W +N   + C+  +L+ V V  F G   E R L YLI
Sbjct:   359 QMVGP-RPIEEMVP--QIDPEAYWGQN-TSHECLKKTLKKVEVWSFYGGTHELRVLEYLI 414

Query:   415 FFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY 463
              +G +L+ ++LY    +D+           A R+ +F+  S NL ++ Y
Sbjct:   415 RYGRMLERVDLYQPIGLDD--IQLLPIRAAADRVGEFEARSENLVVTFY 461

GO:0003674 "molecular_function" evidence=ND

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:504956009 AT2G17305 "AT2G17305" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 60/176 (34%), Positives = 98/176 (55%)

Query:   288 LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSC 347
             L   L  VR LTVCSF LQV+   ++P  + V ++ +HL +   MH +++ GI+  L SC
Sbjct:    96 LFFNLLYVRNLTVCSFFLQVLQDCDDPMALHVSMKTRHLVMKTNMHANDFVGISIFLNSC 155

Query:   348 PSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEA 407
             P L++LT ++    RF     P  +DP   W  +   Y C+  +L+VV +  F+G+  E 
Sbjct:   156 PELESLTFDLVTSSRFVRAPSPLVIDPVSHWLTS-KSYECLEKTLKVVKITKFRGSSNEL 214

Query:   408 RFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY 463
               L YL+  G V++ ++LY ++ ++ N   R    G  +  Q FKRAS +L I+++
Sbjct:   215 HMLQYLLRTGCVMERVDLYEAEGLNHN-QKRWVLAGVEEVQQNFKRASRHLRITLH 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088882 AT3G28410 "AT3G28410" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 2.5e-22, Sum P(2) = 2.5e-22
 Identities = 94/366 (25%), Positives = 175/366 (47%)

Query:    79 HQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVKELALDFHDPLWPEHGSEN 136
             +Q +  Y A I+ +F+LV     N +  V + I FA++R+V+ L++   D  + +  +  
Sbjct:    80 NQTLTSYTAPIITSFKLVMDLNDNTVPQVDSWIEFALSRNVQNLSVFVRDFTYTK--TYR 137

Query:   137 HEAVFDLPMHVYG-HVGLESLELF-SCNINASRFNNFIALKELSLGWIQLSVQSIRELLV 194
                +F +   +    V L+  ++  +C ++      + +L+ L+L + Q+  +S+  +L 
Sbjct:   138 FPDIFYISSSLKQLDVTLDFFDMIPTCAVS------WKSLRNLTLRFCQIPDESMHNILS 191

Query:   195 QCPFLESLSLKKCWEIEYLDITV-PNLRLKRLVIDKCDFNQYR----YEIAAPNLRFWK- 248
              CP LESL+L  C  +E LD++  PNLR  RL I++    QYR      I AP++ + + 
Sbjct:   192 GCPILESLTLDTCRLLERLDLSKSPNLR--RLDINR----QYRRTGPIAIVAPHIYYLRL 245

Query:   249 -YSGTEGMFRVERQNFLTEVEL----DFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSF 303
              YS T     V+  + L+E  L    D  L P   +       E+L +   V+ LTV   
Sbjct:   246 TYSSTPSTI-VDVSS-LSEANLNIISDRLLSPLTADRYQTMALEMLSKFHNVKRLTVGET 303

Query:   304 LLQVIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN-IGPGR 361
             +LQ++  AE   G+  P L+V+ LT+          GI+ +L++ P L+ LT++ +    
Sbjct:   304 ILQILSLAELR-GVPFPTLKVQTLTVKTEFVRSVIPGISRLLQNSPGLKKLTLHTLQLSH 362

Query:   362 RFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQ 421
                   P   L P++CW     ++P      +++        +  A F+N ++     L+
Sbjct:   363 DIMEMHPLKGLYPDQCWRSTCEVFPTSKEIYKMLGCNDATSKLV-ASFMNLVLRNAKTLE 421

Query:   422 ELNLYL 427
              + ++L
Sbjct:   422 RMVVWL 427

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
 Identities = 96/367 (26%), Positives = 175/367 (47%)

Query:    78 VHQWIGQYNATIVKAFRLVFSRPVNFL--VQNCISFAIARDVKELALDFHDPLWPEHGSE 135
             ++Q +  Y A I+ +F+LV     N +  V + I FA++R+V+ L++   D  + +  + 
Sbjct:    78 MNQTLTSYTAPIITSFKLVMDLNSNTVPQVDSWIEFALSRNVQNLSVFVRDFTYSK--TY 135

Query:   136 NHEAVFDLPMHV-YGHVGLESLELF-SCNINASRFNNFIALKELSLGWIQLSVQSIRELL 193
                 +F L   +    V L+  ++  +C ++      + +L+ L+L + Q+  +SI  +L
Sbjct:   136 RFPDIFYLSSSLKLLDVTLDFFDMIPTCTVS------WKSLRNLTLRFCQIPDESIHNIL 189

Query:   194 VQCPFLESLSLKKCWEIEYLDITV-PNLRLKRLVIDKCDFNQYR----YEIAAPNLRFWK 248
               CP LESL+L  C  +E LD++  PNLR  RL I++    QYR      I AP++ + +
Sbjct:   190 SGCPILESLTLDTCRLLERLDLSKSPNLR--RLDINQ----QYRRTGPVAIVAPHIYYLR 243

Query:   249 --YSGTEGMFRVERQNFLTEVELDFA---LQPDFDEEIGEFLYELLRQLEIVRVLTVCSF 303
               YS T     V+  + L+E  L      L P   +       E+L +   V+ LTV   
Sbjct:   244 LTYSSTPSTI-VDVSS-LSEANLTIISSLLSPLTADGYQTMALEMLSKFHNVKRLTVGET 301

Query:   304 LLQVIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRR 362
             LLQ++  AE   G+  P L+V+ LT+          GI+ +L++ P L+ L     P   
Sbjct:   302 LLQILSLAELR-GVPFPTLKVQTLTVKTEFVRSVIPGISRLLQNSPGLKKLR----PSTM 356

Query:   363 FPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTE--ARFLNYLIFFGNVL 420
               ++     L P++CW     ++P   +S  +  + G      +  A F++ ++     L
Sbjct:   357 KMHHLKG--LYPDQCWRSTCEVFP---TSKEIYKMLGCNDATLKLVASFMDLVLRNAKTL 411

Query:   421 QELNLYL 427
             + + ++L
Sbjct:   412 ERMVVWL 418

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 105/375 (28%), Positives = 186/375 (49%)

Query:     8 DMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETK 67
             D+ S+L +D++ +I+SYLP + A +TS+LSRRWRH+W  T  + F      R D      
Sbjct:    37 DLISRLPDDILQLILSYLPTRLAIKTSVLSRRWRHVWSDTWSLSFHRD---RPD------ 87

Query:    68 QLHRSHFINFVHQWIGQYNATIVKAFRLV-------FSRPVNFL-VQNCISFAIARDVKE 119
                 +  IN +   + +Y A  + +FR+         SRP     + + I+FA++R+V+ 
Sbjct:    88 ----APCINRI---LDRYRAPKMMSFRICSCCRAACISRPDTHADIDSWINFAMSRNVEN 140

Query:   120 LALDFHDPLW--PEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKEL 177
             L+L   +  +  PE    N          +Y   G +  +  S N   S   ++ +LK L
Sbjct:   141 LSLYLDEDKYDIPEFLYINSSL-----KQLYLDFGCKK-DFISLNPKCSV--SWTSLKNL 192

Query:   178 SLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDK-CDFNQYR 236
             SL    +S +SI  +L  CP LESL L  C +++ LD++  + RL  L I + C      
Sbjct:   193 SLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLS-KSPRLITLEITRRCRMEPT- 250

Query:   237 YEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEI-GEF----LYELLRQ 291
              ++ AP++R  +   +E    +   + L++ ELD       D ++  +F    + ++L +
Sbjct:   251 -QLVAPHIRCLRLINSEKPCALVDVSSLSQAELDITAYAIVDNKLEADFHQTMVVKMLEK 309

Query:   292 LEIVRVLTVCSFLLQVIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFMLKSCPSL 350
              + V  LT+ +  L+++  AE   G++ P L+ K L L   +  +  +GI  +L++ P L
Sbjct:   310 CQNVEKLTLGANFLKMLSLAELR-GVSFPKLKAKALILETMISRYVIHGIVKVLQNSPDL 368

Query:   351 QTLTIN-IGPGRRFP 364
             + LTI+ +G    +P
Sbjct:   369 KKLTIHPMGSAGSYP 383

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2037578 AT1G78750 "AT1G78750" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 2.8e-19, P = 2.8e-19
 Identities = 113/450 (25%), Positives = 213/450 (47%)

Query:     6 DVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTK--KIEFLESFFVRDDDN 63
             +VD  S L   L+  ++ YLP K+  ++S+LS RWR++W       + + + F VR+  +
Sbjct:    16 EVDWISNLPETLLCQVLFYLPTKDVVKSSVLSSRWRNLWKYVPGFNLSYCD-FHVRNTFS 74

Query:    64 EETKQLHRSHFINFVHQWIGQYNATIVKAFRLVFS-----RPVNFLVQNCISFAIARDVK 118
              +    H + F+ FV  ++G  + + +++FRL +       P   L++  I+  ++R VK
Sbjct:    75 YD----HNT-FLRFVDSFMGFNSQSCLQSFRLEYDSSGYGEPKLALIRRWINSVVSRKVK 129

Query:   119 ELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELS 178
              L +        +   +N+E  F++P  +Y    L  L L   ++ + +F +  +LKEL 
Sbjct:   130 YLGV-------LDDSCDNYE--FEMPPTLYTCETLVYLTLDGLSLASPKFVSLPSLKELH 180

Query:   179 LGWIQLSVQSIRELLV-QCPFLESLSLKK--CWEIEYLDITVPNLRLKRLVIDKCDFNQY 235
             L  ++ +     E L+ QCP LE+L++ +  C + E+  +   +L     V D  +    
Sbjct:   181 LSIVKFADHMALETLISQCPVLENLNINRSFCDDFEFTCVRSQSLLSFTHVADTDEMLNE 240

Query:   236 RYEIA--APNLRFWKYSGTE-GMFRVERQNFLTEVELD--FAL--QPDFD-EEIGE--FL 285
                +A  AP L++ + S      F +     L E ++D  F L  +  F+  ++ +   +
Sbjct:   241 DLVVAIDAPKLKYLRLSDHRIASFILNDLASLVEADIDTVFNLICKKMFNPNDLNKRNMI 300

Query:   286 YELLRQLEIVRVLTVCSFLLQVI-PHAE-EPFGMTVPLEVKHLTLNAGMHPHEYYGINFM 343
              + L  +  ++ L + S  L+VI  ++  EP    +PL     +L    + +++  +   
Sbjct:   301 RDFLVGISSIKTLIIASSTLEVIYDYSRCEP----LPLFRNLSSLRVDFYGYKWEMLPIF 356

Query:   344 LKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPC-VTSSLRVVNV-RGFK 401
             L+SCP+L++L +         NYR       EK    NI+  P    SSL  V + R  K
Sbjct:   357 LESCPNLKSLVVGSA------NYR-------EKEGI-NILSVPRGFLSSLEYVKIERPLK 402

Query:   402 GTMTEARFLNYLIFFGNVLQELNLYLSDEV 431
             G   E + ++YL+    +L++L L L D +
Sbjct:   403 GEAMEMKLVSYLLENSTILKKLTLCLDDSI 432

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099019 AT3G58860 "AT3G58860" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 7.9e-19, P = 7.9e-19
 Identities = 108/430 (25%), Positives = 193/430 (44%)

Query:     3 DNDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDD 62
             D++ +D+FSKL +++++ I+S LP KEAA TS+L+++WR+++     ++F +S F+   +
Sbjct:     2 DSEKMDLFSKLPDEVISHILSSLPTKEAASTSVLAKKWRYLFAFVPSLDFNDSDFLHPQE 61

Query:    63 NEETKQ-LHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVN-FLVQNCISFAIARDVKEL 120
              +  K  + RS F++FV + +    A+ +K F L     V+   V   I   + R V  L
Sbjct:    62 GKREKDGILRS-FMDFVDRVLALQGASPIKKFSLNVKTGVDPDRVDRWICNVLQRGVSHL 120

Query:   121 ALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLEL-FSCNINASRFNNFIA-LKELS 178
             AL F D           E  + LP  +     L  L+  +  ++     + F+  LK L 
Sbjct:   121 AL-FMD----------FEEEYSLPYEISVSKTLVELKTGYGVDLYLWDDDMFLPMLKTLV 169

Query:   179 LGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYE 238
             L  ++      + LL  CP LE L L    E +  ++ + +  LK L I   D       
Sbjct:   170 LESVEFGRGQFQTLLPACPVLEELMLLNM-EWKDRNVILSSSSLKNLKITSEDGCLGTLS 228

Query:   239 IAAPNLRFWKYSG--TEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR 296
                PNL F  Y     E    V  +N L EV ++  L  D      + ++ L+  ++   
Sbjct:   229 FDTPNLVFLDYYDYVAEDYPIVNLKN-LVEVGINLVLTADRINRARDNVWNLIHGIQNAE 287

Query:   297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356
             +  +     +V+  + E   M V   +  L +   M    +  +  +LK+CP+L+TL + 
Sbjct:   288 IFHISPVTFEVLSLSCE--AMPVFKNLTTLNIRTVMQ-QGWQAMPLLLKNCPNLETLYLG 344

Query:   357 IGPGRRFPNYRPPF-ELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIF 415
              G      N      +  P K   K   L  C  + +++   +GF+GT+ E   + + + 
Sbjct:   345 -GLLHTVTNKCGDVCDCIPRK--KKGRSLMACPVNKIQI---QGFRGTIREVHMIKHFLD 398

Query:   416 FGNVLQELNL 425
             F   L+E+ +
Sbjct:   399 FCPSLKEMEI 408

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2099054 AT3G58880 "AT3G58880" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 112/440 (25%), Positives = 192/440 (43%)

Query:     7 VDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEET 66
             VD+ S L +DL+  I+S L  KEAA TSILS+RWR++      +EF +S F+  ++ ++T
Sbjct:     2 VDLVSSLPDDLLGHILSLLTTKEAALTSILSKRWRYLIAFVPYLEFDDSAFLNPEEGKQT 61

Query:    67 KQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNF-LVQNCISFAIARDVKELALDFH 125
             ++  R  FI+FV + +  +  + ++ F L     V+  L+   I   + R V  L +D  
Sbjct:    62 REGTRQSFIDFVDRVLALHGDSPIRKFSLKCKTGVDLDLLNQWICNVLQRGV--LLIDLS 119

Query:   126 DPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFS-CNI--NASRFNNFIALKELSLGWI 182
               L        H  +F   + ++    L  L+L S C I       +    LK L+L  +
Sbjct:   120 MDL-------GHRCMF---IEIFMSRTLVELKLGSGCRIAFGPEHISALPMLKTLTLDSV 169

Query:   183 QLSVQS-IRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFN--QYRYEI 239
               S    +  LL  CP LE+L+L       Y + TV    LK L I     +   + +  
Sbjct:   170 SWSDSGQLERLLSACPALEALNLANVHG-SYPNATVSIASLKTLTIKSVSLSGPAHVFSF 228

Query:   240 AAPNLRFWKYSGT-EGMFRVERQNFLTEVELDFALQPDFDEEIGE------FLYE---LL 289
               PNL    Y+   E  + +    +L E ++ F L     + +         L E   L+
Sbjct:   229 DTPNLLCLNYTALFEDDYPLVNLEYLVEAQIKFVLTDRLIKLVSVRKNGLLMLSEVQKLI 288

Query:   290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPS 349
             R +  VR L +    LQV+    +   M V   +  L + + M    +  +  +LK+CP 
Sbjct:   289 RGISSVRKLYLSPGTLQVLGQCSQ--AMPVFNNLTFLVIESSMDIR-WQAMPVLLKNCPR 345

Query:   350 LQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARF 409
             L+TL I  G      +       D   C ++        +  ++ + +R F+GT+ E   
Sbjct:   346 LETLVIKGG----LVHCVAADCGDACTCISREEKGRSLASCPVKRLEIREFQGTLREMEM 401

Query:   410 LNYLIFFGNVLQELNLYLSD 429
             + +  +    L+E+ +Y+ D
Sbjct:   402 IKHFYYCFLCLKEMEIYVKD 421

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C7X8	FBL33_ARATH	No assigned EC number	0.3399	0.9200	0.8893	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00130878 hypothetical protein (463 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	463
pfam00646	48	pfam00646, F-box, F-box domain	3e-04

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKK 49
             L +DL+  I+S L  K+  R S++S+RWR +  S K 
Sbjct: 3  LLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKL 42

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	463
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.54
smart00579	72	FBD domain in FBox and BRCT domain containing plan	99.47
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	99.44
KOG4341	483	consensus F-box protein containing LRR [General fu	99.31
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.72
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.32
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.3
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.13
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.06
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.86
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.48
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.43
KOG4341	483	consensus F-box protein containing LRR [General fu	97.37
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.33
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.17
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.05
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.05
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.97
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.69
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.66
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.58
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.2
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.96
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.14
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.05
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.78
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	94.28
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	93.99
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.75
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	93.15
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	93.02
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.86
KOG0617	264	consensus Ras suppressor protein (contains leucine	92.77
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	92.61
PRK15386	426	type III secretion protein GogB; Provisional	92.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.42
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.39
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.11
KOG2982	418	consensus Uncharacterized conserved protein [Funct	92.1
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.21
PLN03150	623	hypothetical protein; Provisional	91.18
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	89.78
PLN03150	623	hypothetical protein; Provisional	88.38
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	88.06
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	87.53
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	87.25
PRK15386	426	type III secretion protein GogB; Provisional	87.14
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	85.37
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	84.58
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	84.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	82.6
PF13013	109	F-box-like_2: F-box-like domain	82.18
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	81.9
KOG3864	221	consensus Uncharacterized conserved protein [Funct	81.3
KOG0472	565	consensus Leucine-rich repeat protein [Function un	80.52

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=5.2e-16  Score=137.79  Aligned_cols=279  Identities=15%  Similarity=0.171  Sum_probs=168.4

Q ss_pred             ccCCchHHHHHHHhcCCchhHHhhhccccchhhh------heecceeEeecccccCCCchHHHHhhhhhHHHHHHHHHHH
Q 047476           10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI------WLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIG   83 (463)
Q Consensus        10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~   83 (463)
                      +..||||++..|||.|+.+|+.+.+.|||||.++      |..+   ++....+.+                +...+.+.
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~l---Dl~~r~i~p----------------~~l~~l~~  158 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTL---DLTGRNIHP----------------DVLGRLLS  158 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeee---ccCCCccCh----------------hHHHHHHh
Confidence            5679999999999999999999999999999965      5442   333322111                12222222


Q ss_pred             hcCCCCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeee
Q 047476           84 QYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNI  163 (463)
Q Consensus        84 ~~~~~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~  163 (463)
                          .+|..|++--....+..++... ..++..++.+++.....           ..-.+...+..|..|+.|+|.|..+
T Consensus       159 ----rgV~v~Rlar~~~~~prlae~~-~~frsRlq~lDLS~s~i-----------t~stl~~iLs~C~kLk~lSlEg~~L  222 (419)
T KOG2120|consen  159 ----RGVIVFRLARSFMDQPRLAEHF-SPFRSRLQHLDLSNSVI-----------TVSTLHGILSQCSKLKNLSLEGLRL  222 (419)
T ss_pred             ----CCeEEEEcchhhhcCchhhhhh-hhhhhhhHHhhcchhhe-----------eHHHHHHHHHHHHhhhhcccccccc
Confidence                2355555542222222111111 11234577777754321           1223444566789999999999888


Q ss_pred             CCC---CCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCcee---ecccCCCCccEEEEecCCCCc--
Q 047476          164 NAS---RFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITVPNLRLKRLVIDKCDFNQ--  234 (463)
Q Consensus       164 ~~~---~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~~~~~L~~L~i~~c~~~~--  234 (463)
                      +++   ..+.=.+|+.|+|+.+. ++..+++-++++|..|.+|+|..|...+..   -|..-.++|+.|.+++|..++  
T Consensus       223 dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~  302 (419)
T KOG2120|consen  223 DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQK  302 (419)
T ss_pred             CcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhh
Confidence            754   44566789999999886 788999999999999999999999755432   133334588888888876321  


Q ss_pred             ---eeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCC
Q 047476          235 ---YRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHA  311 (463)
Q Consensus       235 ---~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~  311 (463)
                         ..+.-.+|+|..|+++++..                    .      .+.....+-.++-+++|.++-+. ...|.-
T Consensus       303 sh~~tL~~rcp~l~~LDLSD~v~--------------------l------~~~~~~~~~kf~~L~~lSlsRCY-~i~p~~  355 (419)
T KOG2120|consen  303 SHLSTLVRRCPNLVHLDLSDSVM--------------------L------KNDCFQEFFKFNYLQHLSLSRCY-DIIPET  355 (419)
T ss_pred             hHHHHHHHhCCceeeeccccccc--------------------c------CchHHHHHHhcchheeeehhhhc-CCChHH
Confidence               12223366666666665431                    1      11233345567777888775321 111100


Q ss_pred             CCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEE
Q 047476          312 EEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTI  355 (463)
Q Consensus       312 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l  355 (463)
                        .+.......+.+|++.++...   ..+.-+.+.||+|+--.-
T Consensus       356 --~~~l~s~psl~yLdv~g~vsd---t~mel~~e~~~~lkin~q  394 (419)
T KOG2120|consen  356 --LLELNSKPSLVYLDVFGCVSD---TTMELLKEMLSHLKINCQ  394 (419)
T ss_pred             --eeeeccCcceEEEEeccccCc---hHHHHHHHhCccccccce
Confidence              000011116888888765532   467777889998765443

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=99.47  E-value=1.1e-13  Score=101.03  Aligned_cols=72  Identities=22%  Similarity=0.463  Sum_probs=61.8

Q ss_pred             cccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecccccccCcchhhhHHHHHHHHHHhhhccccceEEeC
Q 047476          386 PCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEVDENGANRETYLGRAQRMQQFKRASVNLSISIY  463 (463)
Q Consensus       386 ~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~~~~~~~~~~~~~~~~~~~~l~~~~raS~~~~i~~~  463 (463)
                      +|+.++||.|+|.||.|..+|++|++||++||+.||+|+|..++..  .+. +   .+..++|..++|||+.|+|.|+
T Consensus         1 ~cl~~~Lk~v~i~~f~g~~~e~~~~~~il~~a~~Lk~~~i~~~~~~--~~~-~---~~i~~~L~~~~~aS~~c~i~~~   72 (72)
T smart00579        1 ECLLSSLEVLEIKGYRGTEEEKELVKYFLENAPCLKKLTISVETSD--DDE-K---LEILKELLSLPRASSSCQVQFL   72 (72)
T ss_pred             CcchheEEEEEEEeccCcHHHHHHHHHHHhcchhheEEEEEeecCC--ccH-H---HHHHHHHHhCcCCCCceEEEeC
Confidence            4788999999999999999999999999999999999999998762  221 1   2345689999999999999985

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=99.44  E-value=1.2e-13  Score=92.31  Aligned_cols=51  Identities=25%  Similarity=0.604  Sum_probs=47.5

Q ss_pred             hhccccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeec
Q 047476          377 CWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYL  427 (463)
Q Consensus       377 ~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~  427 (463)
                      +|.++.++|+|+.+|||.|+|.||.|..+|++|++|+++||++||+|+|.+
T Consensus         1 ~W~~~~~~p~Cl~s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen    1 FWIEPSSVPECLLSHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             CCCCCCCCccchhheeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEEC
Confidence            476777779999999999999999999999999999999999999999974

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.31  E-value=9.5e-14  Score=129.03  Aligned_cols=335  Identities=16%  Similarity=0.179  Sum_probs=171.1

Q ss_pred             CCchHHHHHHHhcCCchhHHhhhccccchhhh------heecceeEeecccccCCCchHHHHhhhhhHHHHHHHHHHHhc
Q 047476           12 KLTNDLVTVIISYLPFKEAARTSILSRRWRHI------WLSTKKIEFLESFFVRDDDNEETKQLHRSHFINFVHQWIGQY   85 (463)
Q Consensus        12 ~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l------w~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~   85 (463)
                      .||.|++..|||+|+++...|++++|+-|..+      |.++.-.+|..+.             .-    .+|..++. +
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv-------------~g----~VV~~~~~-R  135 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDV-------------DG----GVVENMIS-R  135 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcC-------------CC----cceehHhh-h
Confidence            59999999999999999999999999999965      5555433332211             00    13343333 3


Q ss_pred             CCCCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeee-C
Q 047476           86 NATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNI-N  164 (463)
Q Consensus        86 ~~~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~-~  164 (463)
                      .|..++.++++........  ..                                   -.....|+++++|.+.+|.. +
T Consensus       136 cgg~lk~LSlrG~r~v~~s--sl-----------------------------------rt~~~~CpnIehL~l~gc~~iT  178 (483)
T KOG4341|consen  136 CGGFLKELSLRGCRAVGDS--SL-----------------------------------RTFASNCPNIEHLALYGCKKIT  178 (483)
T ss_pred             hccccccccccccccCCcc--hh-----------------------------------hHHhhhCCchhhhhhhcceecc
Confidence            4457777777654432211  00                                   00112445555555555531 1


Q ss_pred             CCCC----CCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeec---ccCCCCccEEEEecCCC-C--
Q 047476          165 ASRF----NNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDI---TVPNLRLKRLVIDKCDF-N--  233 (463)
Q Consensus       165 ~~~~----~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i---~~~~~~L~~L~i~~c~~-~--  233 (463)
                      ...+    ..|+.|+.|.|..|. +++..+..+..+||+|+.|+++.|..+..-.+   ...+..|+.+...+|.- .  
T Consensus       179 d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le  258 (483)
T KOG4341|consen  179 DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELE  258 (483)
T ss_pred             HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHH
Confidence            1111    135555555555533 45555555555666666666666554433111   11223344444444431 0  


Q ss_pred             -ceeEEEECCCceEEEEecccc--eeeee----cCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccc--
Q 047476          234 -QYRYEIAAPNLRFWKYSGTEG--MFRVE----RQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFL--  304 (463)
Q Consensus       234 -~~~~~i~aP~L~~l~~~g~~~--~~~~~----~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~--  304 (463)
                       +..+.-.++.+.++.+..+..  ...+.    .+..|+.+...-+..     ..+..+..+..+.++|+.|-+.+..  
T Consensus       259 ~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-----~~d~~l~aLg~~~~~L~~l~l~~c~~f  333 (483)
T KOG4341|consen  259 ALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-----ITDEVLWALGQHCHNLQVLELSGCQQF  333 (483)
T ss_pred             HHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-----CchHHHHHHhcCCCceEEEeccccchh
Confidence             001111112222222111100  00000    011122222211111     1256677888889999999887643  


Q ss_pred             ----cccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhcc
Q 047476          305 ----LQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTK  380 (463)
Q Consensus       305 ----~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~  380 (463)
                          ++.+..+..        .|+.|.++.+....+ ..+.++-.+||.|+.|.+.-+......      +.      .-
T Consensus       334 sd~~ft~l~rn~~--------~Le~l~~e~~~~~~d-~tL~sls~~C~~lr~lslshce~itD~------gi------~~  392 (483)
T KOG4341|consen  334 SDRGFTMLGRNCP--------HLERLDLEECGLITD-GTLASLSRNCPRLRVLSLSHCELITDE------GI------RH  392 (483)
T ss_pred             hhhhhhhhhcCCh--------hhhhhcccccceehh-hhHhhhccCCchhccCChhhhhhhhhh------hh------hh
Confidence                222222222        466777766554333 368899999999999999733211100      00      00


Q ss_pred             ccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeeccccc
Q 047476          381 NIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLSDEV  431 (463)
Q Consensus       381 ~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~~~~  431 (463)
                      ..+ ..|.+.+|.++++.+......  +..+ .+.+.++||++.+.....+
T Consensus       393 l~~-~~c~~~~l~~lEL~n~p~i~d--~~Le-~l~~c~~Leri~l~~~q~v  439 (483)
T KOG4341|consen  393 LSS-SSCSLEGLEVLELDNCPLITD--ATLE-HLSICRNLERIELIDCQDV  439 (483)
T ss_pred             hhh-ccccccccceeeecCCCCchH--HHHH-HHhhCcccceeeeechhhh
Confidence            011 246778888888887655421  1222 3455778888777766554

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.72  E-value=8e-09  Score=68.16  Aligned_cols=35  Identities=37%  Similarity=0.675  Sum_probs=31.0

Q ss_pred             ccCCchHHHHHHHhcCCchhHHhhhccccchhhhh
Q 047476           10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIW   44 (463)
Q Consensus        10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw   44 (463)
                      |+.||+|++.+||++||.+|.++++.|||+|+.+.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999864

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.32  E-value=1.5e-07  Score=62.48  Aligned_cols=38  Identities=37%  Similarity=0.642  Sum_probs=31.9

Q ss_pred             ccCCchHHHHHHHhcCCchhHHhhhccccchhhhheec
Q 047476           10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLST   47 (463)
Q Consensus        10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw~~~   47 (463)
                      |++||+|++.+|+++|+.+|.++.+.|||+|+.+....
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            67899999999999999999999999999999976554

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN03210 Resistant to P

Probab=98.30  E-value=1.7e-06  Score=96.70  Aligned_cols=67  Identities=13%  Similarity=0.193  Sum_probs=33.3

Q ss_pred             hhcCccceEEEEecc-ccccccCCC-------------CCCCCCC--CCceeEEEEecCCCCchhhHHHHhhhcCCCcce
Q 047476          289 LRQLEIVRVLTVCSF-LLQVIPHAE-------------EPFGMTV--PLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQT  352 (463)
Q Consensus       289 l~~l~~l~~L~l~~~-~~~~~~~~~-------------~~~~~~~--~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~  352 (463)
                      +..+++|+.|.+.++ .++.+|...             .....++  ..+++.|.|...    .+..+..-+..+++|+.
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n----~i~~iP~si~~l~~L~~  873 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRT----GIEEVPWWIEKFSNLSF  873 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCC----CCccChHHHhcCCCCCE
Confidence            456788888888654 234333221             0000000  014555554321    22334444567778888


Q ss_pred             EEEEcCC
Q 047476          353 LTINIGP  359 (463)
Q Consensus       353 L~l~~~~  359 (463)
                      |++..++
T Consensus       874 L~L~~C~  880 (1153)
T PLN03210        874 LDMNGCN  880 (1153)
T ss_pred             EECCCCC
Confidence            8776543

syringae 6; Provisional

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.13  E-value=1.3e-06  Score=55.68  Aligned_cols=34  Identities=38%  Similarity=0.610  Sum_probs=31.6

Q ss_pred             CchHHHHHHHhcCCchhHHhhhccccchhhhhee
Q 047476           13 LTNDLVTVIISYLPFKEAARTSILSRRWRHIWLS   46 (463)
Q Consensus        13 LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw~~   46 (463)
                      ||+|++.+|+++|+.+|.++++.+||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.06  E-value=5.1e-06  Score=92.13  Aligned_cols=66  Identities=21%  Similarity=0.170  Sum_probs=32.5

Q ss_pred             eCCcCcc-CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          142 DLPMHVY-GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       142 ~lp~~l~-~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      .+|..++ .+.+|++|+|+++.+. ......+++|++|+|++..++. .+...+.++++|+.|++.++.
T Consensus       108 ~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~  175 (968)
T PLN00113        108 PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG-EIPNDIGSFSSLKVLDLGGNV  175 (968)
T ss_pred             cCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccc-cCChHHhcCCCCCEEECccCc
Confidence            3454444 4556666666665543 1112345566666665554421 122224455556666655553

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.95  E-value=1.8e-05  Score=75.85  Aligned_cols=20  Identities=25%  Similarity=0.220  Sum_probs=9.2

Q ss_pred             hHHHHHHHHhccccccceee
Q 047476          406 EARFLNYLIFFGNVLQELNL  425 (463)
Q Consensus       406 e~~l~~~ll~~a~~L~~m~i  425 (463)
                      +..+++.+..+++.|+.+-|
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~  314 (319)
T cd00116         295 AQLLAESLLEPGNELESLWV  314 (319)
T ss_pred             HHHHHHHHhhcCCchhhccc
Confidence            34444444444444444433

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.89  E-value=1.6e-05  Score=88.12  Aligned_cols=198  Identities=15%  Similarity=0.063  Sum_probs=124.5

Q ss_pred             CCcCccCCCceeEEEeeeeeeC---CCC-CCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-ccc
Q 047476          143 LPMHVYGHVGLESLELFSCNIN---ASR-FNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITV  217 (463)
Q Consensus       143 lp~~l~~~~~L~~L~L~~~~~~---~~~-~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~  217 (463)
                      +|..+...++|+.|+|+++.+.   |.. +..+++|+.|+|++..++... .  ....+.|+.|++.++.-.+.+. .-.
T Consensus        85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n~~~~~~p~~~~  161 (968)
T PLN00113         85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNNMLSGEIPNDIG  161 (968)
T ss_pred             CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCCcccccCChHHh
Confidence            4556667889999999998764   222 347899999999987664211 1  1357899999999986332221 123


Q ss_pred             CCCCccEEEEecCCCC--ceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhc
Q 047476          218 PNLRLKRLVIDKCDFN--QYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQ  291 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~~--~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~  291 (463)
                      .+++|+.|.+.+|.+.  .....-..++|++|.++++...    ..+.++++|+.+.+....-.       .....-+..
T Consensus       162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-------~~~p~~l~~  234 (968)
T PLN00113        162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLS-------GEIPYEIGG  234 (968)
T ss_pred             cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccC-------CcCChhHhc
Confidence            4669999999988741  1111234688999998876432    34567888888888743211       112233567


Q ss_pred             CccceEEEEecccccc-ccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          292 LEIVRVLTVCSFLLQV-IPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       292 l~~l~~L~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      +++++.|+++++.+.. ++..   +.  ...+|++|.+..+.-.   ..+..-+...++|+.|++...
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~---l~--~l~~L~~L~L~~n~l~---~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSS---LG--NLKNLQYLFLYQNKLS---GPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             CCCCCEEECcCceeccccChh---Hh--CCCCCCEEECcCCeee---ccCchhHhhccCcCEEECcCC
Confidence            8999999997665431 2111   11  1116888887653211   122334567789999998644

>PLN03210 Resistant to P

Probab=97.86  E-value=1.9e-05  Score=88.54  Aligned_cols=100  Identities=21%  Similarity=0.275  Sum_probs=56.9

Q ss_pred             CCceeEEEeeeeeeC--CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeecc-cCCCCccEE
Q 047476          150 HVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-VPNLRLKRL  225 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~-~~~~~L~~L  225 (463)
                      ..+|+.|+|.++.+.  +.....+++|+.|+|+++. +.  .+.. ++.+++|+.|.+.+|..+..+.-. ..+++|+.|
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~--~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK--EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC--cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            356677777666553  2334567777777777643 11  1111 456777777777777655443211 234577777


Q ss_pred             EEecCCCCceeEE--EECCCceEEEEeccc
Q 047476          226 VIDKCDFNQYRYE--IAAPNLRFWKYSGTE  253 (463)
Q Consensus       226 ~i~~c~~~~~~~~--i~aP~L~~l~~~g~~  253 (463)
                      .+.+|. .+..+.  +..++|+.|.++|+.
T Consensus       687 ~L~~c~-~L~~Lp~~i~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        687 DMSRCE-NLEILPTGINLKSLYRLNLSGCS  715 (1153)
T ss_pred             eCCCCC-CcCccCCcCCCCCCCEEeCCCCC
Confidence            777775 333332  245667777776653

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.86  E-value=3.5e-06  Score=80.77  Aligned_cols=61  Identities=26%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             cCCCceeEEEeeeeeeCC---CCCCCC---CccceEEeccEeechhHHHH---HHhcC-CCceEEeecccC
Q 047476          148 YGHVGLESLELFSCNINA---SRFNNF---IALKELSLGWIQLSVQSIRE---LLVQC-PFLESLSLKKCW  208 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~~---~~~~~l---~~L~~L~L~~~~~~~~~l~~---lls~c-p~Le~L~l~~c~  208 (463)
                      ..+++|+.|+|++|.+..   ..+..+   ++|+.|+++++.+++.+...   .+..+ +.|++|.+.+|.
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence            345566666666665531   111122   33666666666655433322   23344 666666666665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=9.9e-06  Score=73.17  Aligned_cols=152  Identities=19%  Similarity=0.200  Sum_probs=101.3

Q ss_pred             CccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeCCCCC
Q 047476           89 IVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRF  168 (463)
Q Consensus        89 ~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~  168 (463)
                      .++.+.+....-++ +|..-  .|-.++++++++...+.          .....+-..+.+|..|..|.|++|.+..+..
T Consensus       211 kLk~lSlEg~~LdD-~I~~~--iAkN~~L~~lnlsm~sG----------~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V  277 (419)
T KOG2120|consen  211 KLKNLSLEGLRLDD-PIVNT--IAKNSNLVRLNLSMCSG----------FTENALQLLLSSCSRLDELNLSWCFLFTEKV  277 (419)
T ss_pred             hhhhccccccccCc-HHHHH--Hhccccceeeccccccc----------cchhHHHHHHHhhhhHhhcCchHhhccchhh
Confidence            46666665432222 12222  23356889998876542          1122233345689999999999997653311


Q ss_pred             -----CCCCccceEEeccEe--echhHHHHHHhcCCCceEEeecccCCCcee--ecccCCCCccEEEEecCCCC--ceeE
Q 047476          169 -----NNFIALKELSLGWIQ--LSVQSIRELLVQCPFLESLSLKKCWEIEYL--DITVPNLRLKRLVIDKCDFN--QYRY  237 (463)
Q Consensus       169 -----~~l~~L~~L~L~~~~--~~~~~l~~lls~cp~Le~L~l~~c~~~~~~--~i~~~~~~L~~L~i~~c~~~--~~~~  237 (463)
                           .-=+.|+.|+|+++.  +...++..+...||.|-+|+|++|..+..-  .+-...+.|++|.+++|+.-  .+.+
T Consensus       278 tv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~  357 (419)
T KOG2120|consen  278 TVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLL  357 (419)
T ss_pred             hHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHee
Confidence                 125789999999986  567799999999999999999999766542  22334569999999999842  2233


Q ss_pred             EE-ECCCceEEEEeccc
Q 047476          238 EI-AAPNLRFWKYSGTE  253 (463)
Q Consensus       238 ~i-~aP~L~~l~~~g~~  253 (463)
                      ++ +.|.|.+|+..|+.
T Consensus       358 ~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  358 ELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeccCcceEEEEecccc
Confidence            44 36788888777754

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.48  E-value=4.4e-05  Score=75.17  Aligned_cols=17  Identities=18%  Similarity=0.018  Sum_probs=10.2

Q ss_pred             HhhcCccceEEEEeccc
Q 047476          288 LLRQLEIVRVLTVCSFL  304 (463)
Q Consensus       288 ll~~l~~l~~L~l~~~~  304 (463)
                      .+.++++++.|+|..+.
T Consensus       360 af~~lssL~~LdLr~N~  376 (873)
T KOG4194|consen  360 AFVGLSSLHKLDLRSNE  376 (873)
T ss_pred             HHHHhhhhhhhcCcCCe
Confidence            45566667777665443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.44  E-value=0.00046  Score=62.69  Aligned_cols=205  Identities=20%  Similarity=0.156  Sum_probs=119.2

Q ss_pred             CccCCCceeEEEeeeeeeCCCC----C-CCCCccceEEeccEeec-hhHHHHHHhcCCCceEEeecccCCCceee-cccC
Q 047476          146 HVYGHVGLESLELFSCNINASR----F-NNFIALKELSLGWIQLS-VQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVP  218 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~~~~----~-~~l~~L~~L~L~~~~~~-~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~  218 (463)
                      .+++-..+.-|.+.+|.++..+    + ..+..++.|+|.+..++ ...+..++.+.|+|+.|+|....--..+. ...+
T Consensus        40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccc
Confidence            3334345566777788776432    1 25889999999999884 57899999999999999999654222222 2245


Q ss_pred             CCCccEEEEecCCCC---ceeEEEECCCceEEEEecccce-ee-----ee-cCCCccEEEEeeecCCCCchhHHHHHHHH
Q 047476          219 NLRLKRLVIDKCDFN---QYRYEIAAPNLRFWKYSGTEGM-FR-----VE-RQNFLTEVELDFALQPDFDEEIGEFLYEL  288 (463)
Q Consensus       219 ~~~L~~L~i~~c~~~---~~~~~i~aP~L~~l~~~g~~~~-~~-----~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~l  288 (463)
                      ..+|+.|.+.+....   .+...-+-|.++.|.++.+..+ +.     .. -.|.+..++..-+..     ..-....++
T Consensus       120 ~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~-----~~w~~~~~l  194 (418)
T KOG2982|consen  120 LKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLE-----QLWLNKNKL  194 (418)
T ss_pred             ccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHH-----HHHHHHHhH
Confidence            669999999876532   2223334677777766554211 00     00 011222222221110     002235667


Q ss_pred             hhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCC
Q 047476          289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPG  360 (463)
Q Consensus       289 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~  360 (463)
                      .+.++++..+.++...++....+. ....++.++  .|.|... .-.+|.+ +.-|..+|.|..|.+.-++.
T Consensus       195 ~r~Fpnv~sv~v~e~PlK~~s~ek-~se~~p~~~--~LnL~~~-~idswas-vD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  195 SRIFPNVNSVFVCEGPLKTESSEK-GSEPFPSLS--CLNLGAN-NIDSWAS-VDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             HhhcccchheeeecCcccchhhcc-cCCCCCcch--hhhhccc-ccccHHH-HHHHcCCchhheeeccCCcc
Confidence            788999999999988776555432 223333322  2333221 1123333 33477899999999866643

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.43  E-value=0.00012  Score=67.72  Aligned_cols=82  Identities=18%  Similarity=0.293  Sum_probs=37.7

Q ss_pred             CceeEEEeeeeeeCCC-------CCCCCCccceEEeccEeec---h------hHHHHHHhcCCCceEEeecccC-CCcee
Q 047476          151 VGLESLELFSCNINAS-------RFNNFIALKELSLGWIQLS---V------QSIRELLVQCPFLESLSLKKCW-EIEYL  213 (463)
Q Consensus       151 ~~L~~L~L~~~~~~~~-------~~~~l~~L~~L~L~~~~~~---~------~~l~~lls~cp~Le~L~l~~c~-~~~~~  213 (463)
                      .+++.++|+|+++...       .+.+-++|+.-+++++.-+   +      ..+...+.+||+|+.|+|++.. +...+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            4556666666655321       2234445555555544211   1      1233334466666666666542 11111


Q ss_pred             ----ecccCCCCccEEEEecCCC
Q 047476          214 ----DITVPNLRLKRLVIDKCDF  232 (463)
Q Consensus       214 ----~i~~~~~~L~~L~i~~c~~  232 (463)
                          ..-+++..|++|.+.+|..
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Gl  132 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGL  132 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCC
Confidence                1122245666666666653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.37  E-value=4.2e-05  Score=72.31  Aligned_cols=198  Identities=19%  Similarity=0.181  Sum_probs=121.0

Q ss_pred             ccCCCceeEEEeeeee-eCCC----CCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceee---ccc
Q 047476          147 VYGHVGLESLELFSCN-INAS----RFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLD---ITV  217 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~-~~~~----~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~---i~~  217 (463)
                      .-.|++|++|.+++|. +...    -..++..|+++.+.+|. ...+.+..+-..|+.+-++++..|..+++..   +..
T Consensus       212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~  291 (483)
T KOG4341|consen  212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC  291 (483)
T ss_pred             HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence            3468888888888884 2221    22367778888777764 3566666666788888888888887666543   344


Q ss_pred             CCCCccEEEEecCCCC----ceeEEEECCCceEEEEecccce-----eeee-cCCCccEEEEeeecCCCCchhHHHHHHH
Q 047476          218 PNLRLKRLVIDKCDFN----QYRYEIAAPNLRFWKYSGTEGM-----FRVE-RQNFLTEVELDFALQPDFDEEIGEFLYE  287 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~~----~~~~~i~aP~L~~l~~~g~~~~-----~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~  287 (463)
                      .+..|+.|...+|...    +..+.-.+++|+.+.+.++..-     ..++ +.+.|+++.+.-+...     ++..+..
T Consensus       292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~-----~d~tL~s  366 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI-----TDGTLAS  366 (483)
T ss_pred             hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee-----hhhhHhh
Confidence            4557788888877641    2233445788888887776421     1222 4566777766533221     1445677


Q ss_pred             HhhcCccceEEEEeccc---cc---cccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          288 LLRQLEIVRVLTVCSFL---LQ---VIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       288 ll~~l~~l~~L~l~~~~---~~---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      +-..++.++.|.++-..   -+   .+..+....     -.+..|+|..+..  ..+.....|.+||+||++++-
T Consensus       367 ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~-----~~l~~lEL~n~p~--i~d~~Le~l~~c~~Leri~l~  434 (483)
T KOG4341|consen  367 LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL-----EGLEVLELDNCPL--ITDATLEHLSICRNLERIELI  434 (483)
T ss_pred             hccCCchhccCChhhhhhhhhhhhhhhhhccccc-----cccceeeecCCCC--chHHHHHHHhhCcccceeeee
Confidence            77888999988886211   11   111111100     0355566655432  235788999999999996653

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=3.1e-05  Score=73.60  Aligned_cols=202  Identities=17%  Similarity=0.179  Sum_probs=123.2

Q ss_pred             CCCceeEEEeeeeeeCCC----CCCCCCccceEEeccEee-chhHHHHHHhcCCCceEEeecccCCC--ceeecccCCCC
Q 047476          149 GHVGLESLELFSCNINAS----RFNNFIALKELSLGWIQL-SVQSIRELLVQCPFLESLSLKKCWEI--EYLDITVPNLR  221 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~~~----~~~~l~~L~~L~L~~~~~-~~~~l~~lls~cp~Le~L~l~~c~~~--~~~~i~~~~~~  221 (463)
                      +...|+...|.++.+...    ....||+++.|+|++.-+ ....+..+....|+||.|+|+...-.  ..-......+.
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            345778888887766422    334799999999998766 56788899999999999999965311  11112223559


Q ss_pred             ccEEEEecCCCC---ceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCcc
Q 047476          222 LKRLVIDKCDFN---QYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEI  294 (463)
Q Consensus       222 L~~L~i~~c~~~---~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~  294 (463)
                      ||.|.+..|.+.   ...+....|+|+.|.+.++..-    .+...+..|+++.|.-..-..++.      ......+++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~------~~~~~~l~~  272 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ------GYKVGTLPG  272 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc------ccccccccc
Confidence            999999999873   4455667899999998887421    122234457777776333222221      123456788


Q ss_pred             ceEEEEeccccccccCCCC-CC-CCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          295 VRVLTVCSFLLQVIPHAEE-PF-GMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       295 l~~L~l~~~~~~~~~~~~~-~~-~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      +..|.++...+..+...+. .. ....+.+|++|.+.-... .+|..+ .-++..++|+.|.+...
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~sl-~~l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRSL-NHLRTLENLKHLRITLN  336 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc-cccccc-chhhccchhhhhhcccc
Confidence            8888887655543322111 11 112233788888754321 122222 22556677777776443

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.23  E-value=0.00034  Score=39.10  Aligned_cols=25  Identities=36%  Similarity=0.624  Sum_probs=22.2

Q ss_pred             ccceEEeccEee-chhHHHHHHhcCC
Q 047476          173 ALKELSLGWIQL-SVQSIRELLVQCP  197 (463)
Q Consensus       173 ~L~~L~L~~~~~-~~~~l~~lls~cp  197 (463)
                      +||+|+|..|.+ ++..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999998 4558999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.17  E-value=0.0002  Score=66.33  Aligned_cols=174  Identities=20%  Similarity=0.191  Sum_probs=98.0

Q ss_pred             CCCCccceEEeccEeec---hhHHHHHHhcCCCceEEeecccCCCcee---ecccCCCCccEEEEecCCCCceeEEEECC
Q 047476          169 NNFIALKELSLGWIQLS---VQSIRELLVQCPFLESLSLKKCWEIEYL---DITVPNLRLKRLVIDKCDFNQYRYEIAAP  242 (463)
Q Consensus       169 ~~l~~L~~L~L~~~~~~---~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~~~~~L~~L~i~~c~~~~~~~~i~aP  242 (463)
                      ..+|+|++|+|+...++   ...+..++++|..|++|.|.+|- ++..   .+..   .|..|..       ....-+.|
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~---al~~l~~-------~kk~~~~~  157 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGR---ALFELAV-------NKKAASKP  157 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHH---HHHHHHH-------HhccCCCc
Confidence            35667777777766663   36789999999999999999995 2221   1111   2222211       11122456


Q ss_pred             CceEEEEecccce--------eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccC--CC
Q 047476          243 NLRFWKYSGTEGM--------FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPH--AE  312 (463)
Q Consensus       243 ~L~~l~~~g~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~--~~  312 (463)
                      .|+.|.+..+...        ..+...|.|+++.+......  ..+ ...+..-+..+++++.|+|..+++.....  -.
T Consensus       158 ~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~--~eG-~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  158 KLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIR--PEG-VTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             ceEEEEeeccccccccHHHHHHHHHhccccceEEEeccccc--Cch-hHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            6666665443210        13445577777777643221  110 22344456788999999998766542110  01


Q ss_pred             CCCCCCCCCceeEEEEecCCCCc-hh-hHHHHhhhcCCCcceEEEEcC
Q 047476          313 EPFGMTVPLEVKHLTLNAGMHPH-EY-YGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       313 ~~~~~~~~~~L~~L~l~~~~~~~-~~-~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      ..++..+  .|+.|.++.|.-.. .. .-+-.+-+..|+|+.|.+...
T Consensus       235 kaL~s~~--~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  235 KALSSWP--HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHhcccc--hheeecccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence            1111111  47888887765422 22 334445667899999998654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.17  E-value=0.00084  Score=70.84  Aligned_cols=97  Identities=20%  Similarity=0.095  Sum_probs=60.2

Q ss_pred             eCCcCccCCCceeEEEeeeeeeCC-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476          142 DLPMHVYGHVGLESLELFSCNINA-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL  220 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~  220 (463)
                      .+|..+.  ++|+.|.+.++.+.. +.  ..++|++|+|++..++.  +..   ..+.|++|.+.++. +..+.-  ...
T Consensus       215 sLP~~l~--~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~-L~~Lp~--lp~  282 (788)
T PRK15387        215 TLPDCLP--AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNP-LTHLPA--LPS  282 (788)
T ss_pred             cCCcchh--cCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCCc-hhhhhh--chh
Confidence            5676554  378888888877652 22  35788999998876542  211   24678888888764 333221  123


Q ss_pred             CccEEEEecCCCCceeEEEECCCceEEEEecc
Q 047476          221 RLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGT  252 (463)
Q Consensus       221 ~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~  252 (463)
                      +|+.|.+.++.  +..+....|+|+.|.++++
T Consensus       283 ~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N  312 (788)
T PRK15387        283 GLCKLWIFGNQ--LTSLPVLPPGLQELSVSDN  312 (788)
T ss_pred             hcCEEECcCCc--cccccccccccceeECCCC
Confidence            67778877775  3333334577888877765

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.09  E-value=0.00016  Score=68.94  Aligned_cols=123  Identities=20%  Similarity=0.098  Sum_probs=81.9

Q ss_pred             CCCceeEEEeeeeeeCCC----CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecc-cCCCCcc
Q 047476          149 GHVGLESLELFSCNINAS----RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-VPNLRLK  223 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~~~----~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~-~~~~~L~  223 (463)
                      ..++|+.|.|+.+.+.-+    ....+++||.|.|++|.++..++..++..||.|+.|.+....+....... .-..+|+
T Consensus       170 qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~  249 (505)
T KOG3207|consen  170 QLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQ  249 (505)
T ss_pred             hcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHh
Confidence            456888888887766422    12368999999999999999999999999999999999987533322111 1134899


Q ss_pred             EEEEecCCC-Cce--eEEEECCCceEEEEecccce-e---------eeecCCCccEEEEee
Q 047476          224 RLVIDKCDF-NQY--RYEIAAPNLRFWKYSGTEGM-F---------RVERQNFLTEVELDF  271 (463)
Q Consensus       224 ~L~i~~c~~-~~~--~~~i~aP~L~~l~~~g~~~~-~---------~~~~~~~L~~l~l~~  271 (463)
                      .|++++..+ ...  ...-.-|.|+.|.++.+... +         .....|+|+.+.+.-
T Consensus       250 ~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~  310 (505)
T KOG3207|consen  250 ELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE  310 (505)
T ss_pred             hccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc
Confidence            999988764 111  22234577777766543221 1         123456677766653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.05  E-value=0.00044  Score=72.38  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=57.5

Q ss_pred             CceeEEEeeeeeeCCC----C-CCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          151 VGLESLELFSCNINAS----R-FNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       151 ~~L~~L~L~~~~~~~~----~-~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      .+|++|+++|...-..    . ..-||+|++|.+++..+..+++..+..++|+|..|+|+++. +..+.--+.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence            4788999887543211    1 23599999999999999888899999999999999999986 4444444445566666


Q ss_pred             EEecC
Q 047476          226 VIDKC  230 (463)
Q Consensus       226 ~i~~c  230 (463)
                      .+.+-
T Consensus       201 ~mrnL  205 (699)
T KOG3665|consen  201 SMRNL  205 (699)
T ss_pred             hccCC
Confidence            55443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.05  E-value=0.00081  Score=70.96  Aligned_cols=33  Identities=24%  Similarity=0.070  Sum_probs=22.0

Q ss_pred             CCceeEEEeeeeeeC-CCCCCCCCccceEEeccEee
Q 047476          150 HVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQL  184 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~  184 (463)
                      .++|++|+|+++.+. .+.  ..++|++|+|.+..+
T Consensus       241 p~~Lk~LdLs~N~LtsLP~--lp~sL~~L~Ls~N~L  274 (788)
T PRK15387        241 PPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL  274 (788)
T ss_pred             CCCCcEEEecCCccCcccC--cccccceeeccCCch
Confidence            368899999988765 222  246777777776543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.97  E-value=7.7e-05  Score=75.80  Aligned_cols=105  Identities=26%  Similarity=0.288  Sum_probs=71.5

Q ss_pred             ccCCCceeEEEeeee-eeC---C----CCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCcee---e
Q 047476          147 VYGHVGLESLELFSC-NIN---A----SRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYL---D  214 (463)
Q Consensus       147 l~~~~~L~~L~L~~~-~~~---~----~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~  214 (463)
                      ...|+.|+.|++++| ...   +    .....+++|+.|++..+. +++..+..+...||.||.|.+.+|..++..   .
T Consensus       210 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~  289 (482)
T KOG1947|consen  210 ALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVS  289 (482)
T ss_pred             HhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHH
Confidence            456788899998873 211   1    112357888899998887 788888888888999999998888764432   3


Q ss_pred             cccCCCCccEEEEecCCCC----ceeEEEECCCceEEEEec
Q 047476          215 ITVPNLRLKRLVIDKCDFN----QYRYEIAAPNLRFWKYSG  251 (463)
Q Consensus       215 i~~~~~~L~~L~i~~c~~~----~~~~~i~aP~L~~l~~~g  251 (463)
                      +...++.|++|.+..|...    ...+...+|+|+.|.+.+
T Consensus       290 i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  290 IAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            4555778999999888731    222233467777665444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.86  E-value=0.00031  Score=69.41  Aligned_cols=58  Identities=28%  Similarity=0.343  Sum_probs=26.4

Q ss_pred             cCCCceeEEEeeeeeeC-CCCCCC-CCccceEEeccEeechhHHHHHHhcCCCceEEeecc
Q 047476          148 YGHVGLESLELFSCNIN-ASRFNN-FIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKK  206 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~-~~~~~~-l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~  206 (463)
                      ++.++|+.+++..+.+. .|.+++ ..+|+.|+|.+..|+.-. ..-++..|.||.|+|+.
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~-se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT-SEELSALPALRSLDLSR  158 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeecccccccc-HHHHHhHhhhhhhhhhh
Confidence            34455666666555543 233332 334666666554432111 01123445555555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.78  E-value=0.0016  Score=55.84  Aligned_cols=81  Identities=23%  Similarity=0.202  Sum_probs=29.9

Q ss_pred             CCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC--CCceeecccCCCCccEEE
Q 047476          150 HVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW--EIEYLDITVPNLRLKRLV  226 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~--~~~~~~i~~~~~~L~~L~  226 (463)
                      +.+|+.|+|++|.+. .+.+..+++|++|++++..++.-+ +.+..+||.|+.|.+.+..  .+..+.--+.+++|+.|+
T Consensus        41 l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             -TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             hcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            457888888888765 455667888888888877663211 1233568888888887653  222222223345555555


Q ss_pred             EecCC
Q 047476          227 IDKCD  231 (463)
Q Consensus       227 i~~c~  231 (463)
                      +.+++
T Consensus       120 L~~NP  124 (175)
T PF14580_consen  120 LEGNP  124 (175)
T ss_dssp             -TT-G
T ss_pred             ccCCc
Confidence            55544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.69  E-value=0.00078  Score=71.29  Aligned_cols=21  Identities=10%  Similarity=0.279  Sum_probs=14.7

Q ss_pred             HHHHhhhcCCCcceEEEEcCC
Q 047476          339 GINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       339 ~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      .+..++..+|++..|.+...+
T Consensus       406 sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        406 SLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             hHHHHhhcCCCccEEEeeCCC
Confidence            456666777888888886543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.66  E-value=0.002  Score=55.28  Aligned_cols=22  Identities=23%  Similarity=0.096  Sum_probs=14.3

Q ss_pred             HHHHhhhcCCCcceEEEEcCCC
Q 047476          339 GINFMLKSCPSLQTLTINIGPG  360 (463)
Q Consensus       339 ~l~~lL~~~P~L~~L~l~~~~~  360 (463)
                      .=..++..+|+|+.|+-.....
T Consensus       131 YR~~vi~~lP~Lk~LD~~~V~~  152 (175)
T PF14580_consen  131 YRLFVIYKLPSLKVLDGQDVTE  152 (175)
T ss_dssp             HHHHHHHH-TT-SEETTEETTS
T ss_pred             HHHHHHHHcChhheeCCEEccH
Confidence            3455678899999998766643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.58  E-value=0.0014  Score=45.63  Aligned_cols=55  Identities=27%  Similarity=0.343  Sum_probs=31.8

Q ss_pred             ceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeeccc
Q 047476          152 GLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKC  207 (463)
Q Consensus       152 ~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c  207 (463)
                      +|++|.+.+|.+.   +..+.++++|++|++++..++.- -...+.++|.|+.|.+.++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            5667777766543   34556677777777776554210 0123556677777766665

...

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.55  E-value=3.1e-05  Score=76.80  Aligned_cols=197  Identities=16%  Similarity=0.181  Sum_probs=112.5

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHH-HHHHhcCCCceEEeecccCCCceee-cc
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSI-RELLVQCPFLESLSLKKCWEIEYLD-IT  216 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l-~~lls~cp~Le~L~l~~c~~~~~~~-i~  216 (463)
                      ..+|..+|....|+.|+|+.+.+.  |..+..-+++-.|+|++..|.  .+ ..++.+..-|-.|+|++.. +..+. -.
T Consensus        93 sGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~  169 (1255)
T KOG0444|consen   93 SGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLFLDLSNNR-LEMLPPQI  169 (1255)
T ss_pred             CCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhhhccccch-hhhcCHHH
Confidence            357777787788888888877664  445555667777777766442  11 1223344455566666543 22221 01


Q ss_pred             cCCCCccEEEEecCCCCceeEEE----ECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHH
Q 047476          217 VPNLRLKRLVIDKCDFNQYRYEI----AAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYE  287 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~~~~~~~~i----~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  287 (463)
                      ..+..|++|.+++.+.  ..+.+    +..+|+.|.+++....     .++.++.+|.++.+....        -..+.+
T Consensus       170 RRL~~LqtL~Ls~NPL--~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~--------Lp~vPe  239 (1255)
T KOG0444|consen  170 RRLSMLQTLKLSNNPL--NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN--------LPIVPE  239 (1255)
T ss_pred             HHHhhhhhhhcCCChh--hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC--------CCcchH
Confidence            1234777788877763  22222    2334555566665432     345566667776665321        112345


Q ss_pred             HhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          288 LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       288 ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      .+-.+++++.|.|+++.+.-+..+...+.     ++..|.++    .+.+..+..-+.+.|+|++|++....
T Consensus       240 cly~l~~LrrLNLS~N~iteL~~~~~~W~-----~lEtLNlS----rNQLt~LP~avcKL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  240 CLYKLRNLRRLNLSGNKITELNMTEGEWE-----NLETLNLS----RNQLTVLPDAVCKLTKLTKLYANNNK  302 (1255)
T ss_pred             HHhhhhhhheeccCcCceeeeeccHHHHh-----hhhhhccc----cchhccchHHHhhhHHHHHHHhccCc
Confidence            56678888899998876665544332221     45555543    23455677777788889988886543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.35  E-value=0.0016  Score=66.08  Aligned_cols=62  Identities=32%  Similarity=0.455  Sum_probs=40.3

Q ss_pred             CCCccceEEeccEe-echhHHHHHHhcCCCceEEeeccc-CCCce-----eecccCCCCccEEEEecCC
Q 047476          170 NFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKC-WEIEY-----LDITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       170 ~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c-~~~~~-----~~i~~~~~~L~~L~i~~c~  231 (463)
                      .++.|+.|.+..+. +++..+..+...||.|++|.+.+| .....     ..+...+++|++|.+..|.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~  254 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG  254 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence            37788888888764 466667777888888888888773 21111     1233445577777777665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.20  E-value=0.0082  Score=63.70  Aligned_cols=101  Identities=17%  Similarity=0.084  Sum_probs=57.6

Q ss_pred             eCCcCccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCC
Q 047476          142 DLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLR  221 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~  221 (463)
                      .+|..+.  ++|+.|.|+++.+..-....+++|++|+|++..++.  +..-+  .+.|+.|.|.+|. +..+.... .++
T Consensus       192 sLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L~Ls~N~-L~~LP~~l-~s~  263 (754)
T PRK15370        192 TIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTS--IPATL--PDTIQEMELSINR-ITELPERL-PSA  263 (754)
T ss_pred             cCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECCCCcccc--CChhh--hccccEEECcCCc-cCcCChhH-hCC
Confidence            4565443  468888888887652111234688888888776532  21111  2468888888775 33322111 136


Q ss_pred             ccEEEEecCCCCceeEEEE-CCCceEEEEecc
Q 047476          222 LKRLVIDKCDFNQYRYEIA-APNLRFWKYSGT  252 (463)
Q Consensus       222 L~~L~i~~c~~~~~~~~i~-aP~L~~l~~~g~  252 (463)
                      |+.|.++++..  ..+.-. .++|+.|.++++
T Consensus       264 L~~L~Ls~N~L--~~LP~~l~~sL~~L~Ls~N  293 (754)
T PRK15370        264 LQSLDLFHNKI--SCLPENLPEELRYLSVYDN  293 (754)
T ss_pred             CCEEECcCCcc--CccccccCCCCcEEECCCC
Confidence            88888876652  222211 246777777765

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.96  E-value=7.7e-05  Score=74.06  Aligned_cols=201  Identities=16%  Similarity=0.158  Sum_probs=86.5

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecc-c
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT-V  217 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~-~  217 (463)
                      .||..+.+...|++|.|+++.+.   ...+.++.+|..|++++..-+...+..-+.+..+|.+++++... +..+.-+ -
T Consensus       164 ~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly  242 (1255)
T KOG0444|consen  164 MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLY  242 (1255)
T ss_pred             hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHh
Confidence            45555555555666666555332   22233344445555554432222222233344455555555332 2221100 1


Q ss_pred             CCCCccEEEEecCCCCceeEEEE---CCCceEEEEecccce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhc
Q 047476          218 PNLRLKRLVIDKCDFNQYRYEIA---APNLRFWKYSGTEGM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQ  291 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~~~~~~~i~---aP~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~  291 (463)
                      ..++|++|.+++..  ++.+...   =-+|++|.++.+...   --+..++.|+++...... ..|+     .+.+=++.
T Consensus       243 ~l~~LrrLNLS~N~--iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk-L~Fe-----GiPSGIGK  314 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNK--ITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK-LTFE-----GIPSGIGK  314 (1255)
T ss_pred             hhhhhheeccCcCc--eeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc-cccc-----CCccchhh
Confidence            13366666666554  2222211   135566665554322   122334556665554211 1111     11111233


Q ss_pred             CccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCC
Q 047476          292 LEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPG  360 (463)
Q Consensus       292 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~  360 (463)
                      +.+++.++...+.++.+|.+-.     +-..|+.|.|.-.    .+..+..-+.-.|.|+.|+++..+.
T Consensus       315 L~~Levf~aanN~LElVPEglc-----RC~kL~kL~L~~N----rLiTLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  315 LIQLEVFHAANNKLELVPEGLC-----RCVKLQKLKLDHN----RLITLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhhhHHHHhhccccccCchhhh-----hhHHHHHhccccc----ceeechhhhhhcCCcceeeccCCcC
Confidence            4455555555555665554311     0014555555321    1122333334457778888765543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.14  E-value=0.00086  Score=56.01  Aligned_cols=65  Identities=23%  Similarity=0.265  Sum_probs=32.5

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeeccc
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKC  207 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c  207 (463)
                      ..+|..+-...+|+.|.+.++.+.  |++..++|.|+.|.+.-.++  ..+..=+..+|.||.|++.+.
T Consensus        46 ~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgfgs~p~levldltyn  112 (264)
T KOG0617|consen   46 TVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGFGSFPALEVLDLTYN  112 (264)
T ss_pred             eecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCccccCCCchhhhhhcccc
Confidence            345555555556666666665543  34455566666665543211  111122344566666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.05  E-value=0.0041  Score=63.37  Aligned_cols=196  Identities=20%  Similarity=0.212  Sum_probs=98.1

Q ss_pred             CCCCccEEEEEEeCCcchh----HHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeee
Q 047476           86 NATIVKAFRLVFSRPVNFL----VQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSC  161 (463)
Q Consensus        86 ~~~~l~~l~l~~~~~~~~~----i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~  161 (463)
                      .|++++.|+.......+..    +...++..-  +.+.+.+.-.+          ...++. |..++.+.+|++|.|.+|
T Consensus        53 ~g~~~~~f~a~~s~~ads~vl~qLq~i~d~lq--kt~~lkl~~~p----------a~~pt~-pi~ifpF~sLr~LElrg~  119 (1096)
T KOG1859|consen   53 SGAPVDYFRAYVSDNADSRVLEQLQRILDFLQ--KTKVLKLLPSP----------ARDPTE-PISIFPFRSLRVLELRGC  119 (1096)
T ss_pred             CCCCCceeEEecCCcccchHHHHHHHHHHHHh--hheeeeecccC----------CCCCCC-CceeccccceeeEEecCc
Confidence            3578999988776665544    334444432  22333332111          112223 778888999999999999


Q ss_pred             eeCC-CCCCCC-CccceEEeccEeechhHHHHHHhc---------------------------------CCCceEEeecc
Q 047476          162 NINA-SRFNNF-IALKELSLGWIQLSVQSIRELLVQ---------------------------------CPFLESLSLKK  206 (463)
Q Consensus       162 ~~~~-~~~~~l-~~L~~L~L~~~~~~~~~l~~lls~---------------------------------cp~Le~L~l~~  206 (463)
                      .+.. -++..+ ..|++|-..+   +-.++..+++.                                 .|.||.|+|+.
T Consensus       120 ~L~~~~GL~~lr~qLe~LIC~~---Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLsh  196 (1096)
T KOG1859|consen  120 DLSTAKGLQELRHQLEKLICHN---SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSH  196 (1096)
T ss_pred             chhhhhhhHHHHHhhhhhhhhc---cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccch
Confidence            7643 111111 1233332221   12223333322                                 35566666665


Q ss_pred             cCCCceeecccCCCCccEEEEecCCC-CceeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHH
Q 047476          207 CWEIEYLDITVPNLRLKRLVIDKCDF-NQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGE  283 (463)
Q Consensus       207 c~~~~~~~i~~~~~~L~~L~i~~c~~-~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~  283 (463)
                      .. +.....-..++.|++|+++.... ....+...+-+|..|.+.|+...  .-+.++.+|..+.+.+..-.      ++
T Consensus       197 Nk-~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~------~h  269 (1096)
T KOG1859|consen  197 NK-FTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLS------EH  269 (1096)
T ss_pred             hh-hhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhh------cc
Confidence            43 23222223355777777765432 22333333445666766665433  23445566666655532211      12


Q ss_pred             HHHHHhhcCccceEEEEeccc
Q 047476          284 FLYELLRQLEIVRVLTVCSFL  304 (463)
Q Consensus       284 ~~~~ll~~l~~l~~L~l~~~~  304 (463)
                      .-...+..+..++.|.|.|+.
T Consensus       270 seL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  270 SELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhHHHHHHHHHHHhhcCCc
Confidence            223345566666666666543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.78  E-value=0.013  Score=53.58  Aligned_cols=242  Identities=16%  Similarity=0.106  Sum_probs=135.8

Q ss_pred             ceeCCcCccCCCceeEEEeeeee-------eCC----CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          140 VFDLPMHVYGHVGLESLELFSCN-------INA----SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~-------~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      .+.+.+.+--|..|+.|..++..       +.+    ..+..|++|+++.++.+  +.+.+..+...=|.|+++.+++..
T Consensus       171 k~d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~--~~~~i~~~~~~kptl~t~~v~~s~  248 (490)
T KOG1259|consen  171 KYDFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSAL--STENIVDIELLKPTLQTICVHNTT  248 (490)
T ss_pred             ccchHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeecc--chhheeceeecCchhheeeeeccc
Confidence            34555545456688999887541       111    13346899999999988  666777777788999999988753


Q ss_pred             CCceee-c--------------------cc---CCCCccEEEEecCCCC-ceeEEEECCCceEEEEecccce--eeeecC
Q 047476          209 EIEYLD-I--------------------TV---PNLRLKRLVIDKCDFN-QYRYEIAAPNLRFWKYSGTEGM--FRVERQ  261 (463)
Q Consensus       209 ~~~~~~-i--------------------~~---~~~~L~~L~i~~c~~~-~~~~~i~aP~L~~l~~~g~~~~--~~~~~~  261 (463)
                      .-.... +                    ..   .-..|+.|++++.... +..-.--+|.++.|.++.+...  -.+..+
T Consensus       249 ~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L  328 (490)
T KOG1259|consen  249 IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAEL  328 (490)
T ss_pred             ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhc
Confidence            111000 0                    00   0124666666654420 1111223688888877654332  134556


Q ss_pred             CCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHH-
Q 047476          262 NFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGI-  340 (463)
Q Consensus       262 ~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-  340 (463)
                      ++|+++.+....        -..+..+-..+-|++.|.|.++.++.++...      +-.+|.+|++..+    .+..+ 
T Consensus       329 ~~L~~LDLS~N~--------Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~------KLYSLvnLDl~~N----~Ie~ld  390 (490)
T KOG1259|consen  329 PQLQLLDLSGNL--------LAECVGWHLKLGNIKTLKLAQNKIETLSGLR------KLYSLVNLDLSSN----QIEELD  390 (490)
T ss_pred             ccceEeecccch--------hHhhhhhHhhhcCEeeeehhhhhHhhhhhhH------hhhhheecccccc----chhhHH
Confidence            777777766321        1223334456778888888777666554221      1125666666442    22222 


Q ss_pred             -HHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhccccccccccccceeEEEEEeeecchhhHHHHHHHHh
Q 047476          341 -NFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIF  415 (463)
Q Consensus       341 -~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~  415 (463)
                       ..-+.+.|.||.|.+...+.....+|.    ...   .       .-+...--+|.+.|-.++..|++-+..+..
T Consensus       391 eV~~IG~LPCLE~l~L~~NPl~~~vdYR----TKV---L-------a~FGERaSE~~LD~~~~~~~ELDTV~Vl~A  452 (490)
T KOG1259|consen  391 EVNHIGNLPCLETLRLTGNPLAGSVDYR----TKV---L-------ARFGERASEISLDNEPGNQQELDTVLVLSA  452 (490)
T ss_pred             HhcccccccHHHHHhhcCCCccccchHH----HHH---H-------HHHhhhhhheecCCCCcchhhhhHHHHHHH
Confidence             334678999999999766543322111    000   0       111122345677777788888887776543

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=94.28  E-value=0.016  Score=53.47  Aligned_cols=37  Identities=19%  Similarity=0.509  Sum_probs=34.8

Q ss_pred             cccccCCc----hHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476            7 VDMFSKLT----NDLVTVIISYLPFKEAARTSILSRRWRHI   43 (463)
Q Consensus         7 ~D~is~LP----d~lL~~ILs~Lp~~d~~rts~lSrrWr~l   43 (463)
                      .|-|+.||    |++...|||+|+..++..+-.+||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            57899999    99999999999999999999999999964

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=93.99  E-value=0.026  Score=59.39  Aligned_cols=121  Identities=15%  Similarity=0.126  Sum_probs=63.7

Q ss_pred             HHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCC
Q 047476          283 EFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRR  362 (463)
Q Consensus       283 ~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~  362 (463)
                      ..+..+..++|+|.+|++++..+..+. |-..++     ||+.|.+..- .-.+...+.. |-...+|+.|+|.......
T Consensus       163 ~dF~~lc~sFpNL~sLDIS~TnI~nl~-GIS~Lk-----nLq~L~mrnL-e~e~~~~l~~-LF~L~~L~vLDIS~~~~~~  234 (699)
T KOG3665|consen  163 DDFSQLCASFPNLRSLDISGTNISNLS-GISRLK-----NLQVLSMRNL-EFESYQDLID-LFNLKKLRVLDISRDKNND  234 (699)
T ss_pred             hhHHHHhhccCccceeecCCCCccCcH-HHhccc-----cHHHHhccCC-CCCchhhHHH-HhcccCCCeeecccccccc
Confidence            346677788888888888776555331 111011     3333433211 1111122222 2346788888886664321


Q ss_pred             CCCCCCCCCCCchhhhccccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeee
Q 047476          363 FPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLY  426 (463)
Q Consensus       363 ~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~  426 (463)
                      ..      . ....+       -+|.. -|-++.+.++.|++-.-+++.-++..=|.|+.+..-
T Consensus       235 ~~------~-ii~qY-------lec~~-~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~  283 (699)
T KOG3665|consen  235 DT------K-IIEQY-------LECGM-VLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL  283 (699)
T ss_pred             ch------H-HHHHH-------HHhcc-cCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence            10      0 00111       14432 244555555668887778888888877777777743

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.95  E-value=0.047  Score=34.97  Aligned_cols=35  Identities=31%  Similarity=0.323  Sum_probs=19.8

Q ss_pred             CccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          172 IALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       172 ~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      ++|++|+|++..++  ++...+++||.|+.|++.++.
T Consensus         1 ~~L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQIT--DLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCc--ccCchHhCCCCCCEEEecCCC
Confidence            35666666666443  244445667777777777664

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.75  E-value=0.03  Score=35.87  Aligned_cols=35  Identities=29%  Similarity=0.367  Sum_probs=25.0

Q ss_pred             CceeEEEeeeeeeC--CCCCCCCCccceEEeccEeec
Q 047476          151 VGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLS  185 (463)
Q Consensus       151 ~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~  185 (463)
                      ++|++|+|+++.+.  ++.+..|++|+.|++++..++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            36788888888775  233778999999999887664

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=93.15  E-value=0.017  Score=60.61  Aligned_cols=99  Identities=21%  Similarity=0.259  Sum_probs=55.0

Q ss_pred             CCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476          150 HVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV  226 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~  226 (463)
                      .+.|+.|+|+++++.   ...+..|+.|+.|.|++..+  ..+..-+..|+.|++|....-. +..+.=-..++.|+.++
T Consensus       382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL--~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lD  458 (1081)
T KOG0618|consen  382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKL--TTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLD  458 (1081)
T ss_pred             ccceeeeeecccccccCCHHHHhchHHhHHHhcccchh--hhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEe
Confidence            345555555555432   22334555555555555432  2233445567777777665433 11111112356899999


Q ss_pred             EecCCCCceeEEE----ECCCceEEEEeccc
Q 047476          227 IDKCDFNQYRYEI----AAPNLRFWKYSGTE  253 (463)
Q Consensus       227 i~~c~~~~~~~~i----~aP~L~~l~~~g~~  253 (463)
                      ++....  ..+.+    ..|+|++|+++|+.
T Consensus       459 lS~N~L--~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  459 LSCNNL--SEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             cccchh--hhhhhhhhCCCcccceeeccCCc
Confidence            987653  33322    23799999999976

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=93.02  E-value=0.13  Score=35.51  Aligned_cols=43  Identities=26%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             eeCCcCc-cCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEe
Q 047476          141 FDLPMHV-YGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQ  183 (463)
Q Consensus       141 ~~lp~~l-~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~  183 (463)
                      ..+|... ..+++|++|+++++.+.   +..|.++++|++|++++..
T Consensus        14 ~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   14 TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3566544 45889999999998654   5678899999999998753

...

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.86  E-value=0.061  Score=51.73  Aligned_cols=37  Identities=27%  Similarity=0.365  Sum_probs=33.1

Q ss_pred             ccCCchHHHHHHHhcCC-chhHHhhhccccchhhhhee
Q 047476           10 FSKLTNDLVTVIISYLP-FKEAARTSILSRRWRHIWLS   46 (463)
Q Consensus        10 is~LPd~lL~~ILs~Lp-~~d~~rts~lSrrWr~lw~~   46 (463)
                      -|+||+|+|..|..+|| .-|.+|.+.|||.||..-..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            57899999999999997 47999999999999986554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=92.77  E-value=0.0073  Score=50.60  Aligned_cols=48  Identities=25%  Similarity=0.334  Sum_probs=39.0

Q ss_pred             ceeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechh
Q 047476          140 VFDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQ  187 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~  187 (463)
                      .-.+|..+.+.+.|+.|.++-+++.  |.+|++||.|+.|+|....+++.
T Consensus        68 ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~  117 (264)
T KOG0617|consen   68 IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNEN  117 (264)
T ss_pred             hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccc
Confidence            4578989999999999999877654  67899999999999987755443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=92.61  E-value=0.38  Score=41.77  Aligned_cols=58  Identities=26%  Similarity=0.270  Sum_probs=31.4

Q ss_pred             CCCceeEEEeeeeeeC--CCCC-CCCCccceEEeccEee-chhHHHHHHhcCCCceEEeeccc
Q 047476          149 GHVGLESLELFSCNIN--ASRF-NNFIALKELSLGWIQL-SVQSIRELLVQCPFLESLSLKKC  207 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~--~~~~-~~l~~L~~L~L~~~~~-~~~~l~~lls~cp~Le~L~l~~c  207 (463)
                      ..+.|.+|.|.++++.  .+.+ .-+|+|++|.|.+..+ .-++++. +..||.|+.|.+.+-
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGN  123 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCC
Confidence            3456677777666543  1222 2366677777766544 2334433 345666666666654

>PRK15386 type III secretion protein GogB; Provisional

Probab=92.59  E-value=0.17  Score=49.46  Aligned_cols=88  Identities=16%  Similarity=0.217  Sum_probs=43.6

Q ss_pred             CCCccceEEeccEeechhHHHHHHhcCC-CceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEEECCCceEEE
Q 047476          170 NFIALKELSLGWIQLSVQSIRELLVQCP-FLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWK  248 (463)
Q Consensus       170 ~l~~L~~L~L~~~~~~~~~l~~lls~cp-~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~  248 (463)
                      .+++++.|+++++.+.  .+.    ..| .|++|.+.+|..+..+.-.. .++|++|.+.+|. .+..   --++|+.|.
T Consensus        50 ~~~~l~~L~Is~c~L~--sLP----~LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs-~L~s---LP~sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDCDIE--SLP----VLPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCP-EISG---LPESVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCCCCc--ccC----CCCCCCcEEEccCCCCcccCCchh-hhhhhheEccCcc-cccc---cccccceEE
Confidence            3566777777766331  111    223 47777777776654432111 1367777777764 2222   134566666


Q ss_pred             EecccceeeeecCC-CccEEEE
Q 047476          249 YSGTEGMFRVERQN-FLTEVEL  269 (463)
Q Consensus       249 ~~g~~~~~~~~~~~-~L~~l~l  269 (463)
                      +.+... ..+..+| +|+++.+
T Consensus       119 L~~n~~-~~L~~LPssLk~L~I  139 (426)
T PRK15386        119 IKGSAT-DSIKNVPNGLTSLSI  139 (426)
T ss_pred             eCCCCC-cccccCcchHhheec
Confidence            543221 1234444 3665555

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=0.033  Score=48.10  Aligned_cols=80  Identities=20%  Similarity=0.244  Sum_probs=48.8

Q ss_pred             ceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeecc--cCCCCccEE
Q 047476          152 GLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT--VPNLRLKRL  225 (463)
Q Consensus       152 ~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~--~~~~~L~~L  225 (463)
                      .++.++=+++.+-   -..+.+++.++.|.+.+|. +++..++.+-...|+|++|+|++|..++...+.  ..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            4455544444332   1233467777888888775 577777777777788888888888766543321  223466666


Q ss_pred             EEecCC
Q 047476          226 VIDKCD  231 (463)
Q Consensus       226 ~i~~c~  231 (463)
                      .+.+-+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            655443

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.39  E-value=0.071  Score=49.07  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=31.0

Q ss_pred             ccccCCchHHHHHHHh-----cCCchhHHhhhccccchhhh
Q 047476            8 DMFSKLTNDLVTVIIS-----YLPFKEAARTSILSRRWRHI   43 (463)
Q Consensus         8 D~is~LPd~lL~~ILs-----~Lp~~d~~rts~lSrrWr~l   43 (463)
                      +.|+.||||||..||.     .++.++..++|+|||.|+..
T Consensus       105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            4578999999999986     45679999999999999863

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.11  E-value=0.071  Score=47.94  Aligned_cols=83  Identities=23%  Similarity=0.215  Sum_probs=57.6

Q ss_pred             CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEee-chhHHHHHHhcCCCceEEeecccCC--CceeecccCCCCccE
Q 047476          149 GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQL-SVQSIRELLVQCPFLESLSLKKCWE--IEYLDITVPNLRLKR  224 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~-~~~~l~~lls~cp~Le~L~l~~c~~--~~~~~i~~~~~~L~~  224 (463)
                      ....|+.|++.++.+. ...+..+|+||+|.++...+ ...++.-++..||+|..|++++...  +..+.-.....+|.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            3456778888888765 35666789999999998754 3456777788899999999997641  222222223446777


Q ss_pred             EEEecCC
Q 047476          225 LVIDKCD  231 (463)
Q Consensus       225 L~i~~c~  231 (463)
                      |.+.+|.
T Consensus       121 Ldl~n~~  127 (260)
T KOG2739|consen  121 LDLFNCS  127 (260)
T ss_pred             hhcccCC
Confidence            7777776

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.10  E-value=0.16  Score=46.66  Aligned_cols=153  Identities=15%  Similarity=0.002  Sum_probs=91.9

Q ss_pred             ccCCCceeEEEeeeeeeCCC--CC-CCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC----CCceeecccCC
Q 047476          147 VYGHVGLESLELFSCNINAS--RF-NNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW----EIEYLDITVPN  219 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~~--~~-~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~----~~~~~~i~~~~  219 (463)
                      +-+.+.|+.|.|+.+.+.++  .. ....+|++|.|.+..++.......++..|.+++|+++...    .+.+-.+..-+
T Consensus        93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s  172 (418)
T KOG2982|consen   93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWS  172 (418)
T ss_pred             HhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccc
Confidence            34567899999998877532  11 3567999999999988888899999999999999888653    12222233334


Q ss_pred             CCccEEEEecCCCC----ceeEEEECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhh
Q 047476          220 LRLKRLVIDKCDFN----QYRYEIAAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLR  290 (463)
Q Consensus       220 ~~L~~L~i~~c~~~----~~~~~i~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~  290 (463)
                      +.++.|....|.+.    ...+.---|++..+-+..++..     ......|.+.-+.+.-..-.      .-.-..-+.
T Consensus       173 ~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id------swasvD~Ln  246 (418)
T KOG2982|consen  173 TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID------SWASVDALN  246 (418)
T ss_pred             hhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccc------cHHHHHHHc
Confidence            47888888888741    1222223567766655443221     11223333332222211111      122234477


Q ss_pred             cCccceEEEEecccc
Q 047476          291 QLEIVRVLTVCSFLL  305 (463)
Q Consensus       291 ~l~~l~~L~l~~~~~  305 (463)
                      +++.+..|.+..+.+
T Consensus       247 ~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  247 GFPQLVDLRVSENPL  261 (418)
T ss_pred             CCchhheeeccCCcc
Confidence            888888888876543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.21  E-value=0.27  Score=42.70  Aligned_cols=99  Identities=17%  Similarity=0.241  Sum_probs=68.9

Q ss_pred             ceeEEEeeeeeeC-CCCCCCCCccceEEeccEeec--hhHHHHHHhcCCCceEEeecccC--CCceeecccCCCCccEEE
Q 047476          152 GLESLELFSCNIN-ASRFNNFIALKELSLGWIQLS--VQSIRELLVQCPFLESLSLKKCW--EIEYLDITVPNLRLKRLV  226 (463)
Q Consensus       152 ~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~--~~~l~~lls~cp~Le~L~l~~c~--~~~~~~i~~~~~~L~~L~  226 (463)
                      ....++|+.+.+. ...+..+++|.+|.|....|+  +..+..+   .|+|..|.+.+.+  .++++.-...||+|+.|+
T Consensus        43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4566667666553 456778999999999988764  3445443   4899999999854  244454445688999999


Q ss_pred             EecCCCC----ceeEEE-ECCCceEEEEeccc
Q 047476          227 IDKCDFN----QYRYEI-AAPNLRFWKYSGTE  253 (463)
Q Consensus       227 i~~c~~~----~~~~~i-~aP~L~~l~~~g~~  253 (463)
                      +-+.+..    .....+ --|+|+.|++.+..
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            9877641    222333 47999999998753

>PLN03150 hypothetical protein; Provisional

Probab=91.18  E-value=0.21  Score=52.54  Aligned_cols=80  Identities=15%  Similarity=0.057  Sum_probs=58.2

Q ss_pred             ceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEE
Q 047476          152 GLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVI  227 (463)
Q Consensus       152 ~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i  227 (463)
                      .++.|.|.++.+.   +..+..+++|+.|+|++..+.. .+...+..++.|+.|+|.++.-.+.+. .-..+++|+.|.+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            4788899888764   4456789999999999876542 344457889999999999886433322 1234669999999


Q ss_pred             ecCCC
Q 047476          228 DKCDF  232 (463)
Q Consensus       228 ~~c~~  232 (463)
                      .++.+
T Consensus       498 s~N~l  502 (623)
T PLN03150        498 NGNSL  502 (623)
T ss_pred             cCCcc
Confidence            98864

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=89.78  E-value=0.84  Score=41.60  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=79.7

Q ss_pred             HHHHhcCCCceEEeecccC-CCcee----ecccCCCCccEEEEecCCCC---------------ceeEEEECCCceEEEE
Q 047476          190 RELLVQCPFLESLSLKKCW-EIEYL----DITVPNLRLKRLVIDKCDFN---------------QYRYEIAAPNLRFWKY  249 (463)
Q Consensus       190 ~~lls~cp~Le~L~l~~c~-~~~~~----~i~~~~~~L~~L~i~~c~~~---------------~~~~~i~aP~L~~l~~  249 (463)
                      -..+..||+|+..+|++.. +.+..    ..-+.+..|++|.+.+|..+               ...-.-++|.|+++.+
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            3345577777777777543 21111    12233456777777777531               1122346899999876


Q ss_pred             ecccce--------eeeecCCCccEEEEeeecCCCCchhHHHHHHH--HhhcCccceEEEEeccccccccCCCCCCCCCC
Q 047476          250 SGTEGM--------FRVERQNFLTEVELDFALQPDFDEEIGEFLYE--LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTV  319 (463)
Q Consensus       250 ~g~~~~--------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~--ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~  319 (463)
                      ..+...        ..+.+--.|+.+.|....-.. .   +-...-  =+..+.+++.|+|..+++....... .....+
T Consensus       165 grNRlengs~~~~a~~l~sh~~lk~vki~qNgIrp-e---gv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~-La~al~  239 (388)
T COG5238         165 GRNRLENGSKELSAALLESHENLKEVKIQQNGIRP-E---GVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRY-LADALC  239 (388)
T ss_pred             ccchhccCcHHHHHHHHHhhcCceeEEeeecCcCc-c---hhHHHHHHHHHHhCcceeeeccccchhhhhHHH-HHHHhc
Confidence            443210        112222357777776432211 0   111111  1356788999998776654211000 000011


Q ss_pred             CC-ceeEEEEecCCCCchhhHHHHhhh-----cCCCcceEEEEcC
Q 047476          320 PL-EVKHLTLNAGMHPHEYYGINFMLK-----SCPSLQTLTINIG  358 (463)
Q Consensus       320 ~~-~L~~L~l~~~~~~~~~~~l~~lL~-----~~P~L~~L~l~~~  358 (463)
                      .. +|+.|.++.|.-..  .+...+++     ..|+|..|..+..
T Consensus       240 ~W~~lrEL~lnDClls~--~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         240 EWNLLRELRLNDCLLSN--EGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             ccchhhhccccchhhcc--ccHHHHHHHhhhhcCCCccccccchh
Confidence            11 46888887766432  23444444     3567766665443

>PLN03150 hypothetical protein; Provisional

Probab=88.38  E-value=0.44  Score=50.14  Aligned_cols=80  Identities=18%  Similarity=0.059  Sum_probs=51.4

Q ss_pred             ccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEEecCCCC--ceeEEEECCCceEEEE
Q 047476          173 ALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVIDKCDFN--QYRYEIAAPNLRFWKY  249 (463)
Q Consensus       173 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i~~c~~~--~~~~~i~aP~L~~l~~  249 (463)
                      .++.|+|.+..+.. .+..-+..++.|+.|+|.++.-.+.+. ....+++|+.|.++++.+.  .....-..++|+.|.+
T Consensus       419 ~v~~L~L~~n~L~g-~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRG-FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccc-cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            47788888765532 233446788999999999876333332 2234668999999888742  1111224678888888


Q ss_pred             eccc
Q 047476          250 SGTE  253 (463)
Q Consensus       250 ~g~~  253 (463)
                      +++.
T Consensus       498 s~N~  501 (623)
T PLN03150        498 NGNS  501 (623)
T ss_pred             cCCc
Confidence            7753

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=88.06  E-value=0.28  Score=27.24  Aligned_cols=18  Identities=39%  Similarity=0.654  Sum_probs=14.4

Q ss_pred             CCCceEEeecccCCCcee
Q 047476          196 CPFLESLSLKKCWEIEYL  213 (463)
Q Consensus       196 cp~Le~L~l~~c~~~~~~  213 (463)
                      ||.|+.|+|.+|..+++.
T Consensus         1 c~~L~~L~l~~C~~itD~   18 (26)
T smart00367        1 CPNLRELDLSGCTNITDE   18 (26)
T ss_pred             CCCCCEeCCCCCCCcCHH
Confidence            788888888888876654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.53  E-value=0.14  Score=46.20  Aligned_cols=103  Identities=18%  Similarity=0.153  Sum_probs=49.5

Q ss_pred             hcCCCceEEeecccCCCceeecccCCCCccEEEEecCCC----CceeEEEECCCceEEEEeccccee--eee---cCCCc
Q 047476          194 VQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDF----NQYRYEIAAPNLRFWKYSGTEGMF--RVE---RQNFL  264 (463)
Q Consensus       194 s~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~----~~~~~~i~aP~L~~l~~~g~~~~~--~~~---~~~~L  264 (463)
                      ...-.|+.|++.+|...+..... .+++||.|.++...+    .+..+...+|+|+++.++|+...+  ++.   .+.+|
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P-~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFP-KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccccchhhhhhhccceeecccCC-CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            33444444445554322221111 144777777766532    244445567999999988876542  222   23334


Q ss_pred             cEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476          265 TEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC  301 (463)
Q Consensus       265 ~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~  301 (463)
                      ..+.+..+...+.+    ..-.....-+++++.|+-+
T Consensus       119 ~~Ldl~n~~~~~l~----dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLD----DYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhcccCCccccc----cHHHHHHHHhhhhcccccc
Confidence            44444444333221    1122334445666555543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=87.25  E-value=0.047  Score=50.04  Aligned_cols=54  Identities=22%  Similarity=0.246  Sum_probs=23.1

Q ss_pred             CCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecc
Q 047476          150 HVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKK  206 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~  206 (463)
                      +..|++|+|+++.+.  .....-.|.++.|.+++..+..  +++ +...|+|..|++++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~--v~n-La~L~~L~~LDLS~  338 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT--VQN-LAELPQLQLLDLSG  338 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceee--ehh-hhhcccceEeeccc
Confidence            344555555554433  1222234555555555443311  111 23345555555554

>PRK15386 type III secretion protein GogB; Provisional

Probab=87.14  E-value=0.83  Score=44.76  Aligned_cols=106  Identities=18%  Similarity=0.234  Sum_probs=51.8

Q ss_pred             ceeEEEeeeee-eC-CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEe
Q 047476          152 GLESLELFSCN-IN-ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVID  228 (463)
Q Consensus       152 ~L~~L~L~~~~-~~-~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~  228 (463)
                      +|++|.+.+|. +. .+.. -.++|+.|.+.+|. +.     .+   -+.|+.|.+.... ...+.  .--++|+.|.+.
T Consensus        73 sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L~~n~-~~~L~--~LPssLk~L~I~  140 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEIS-----GL---PESVRSLEIKGSA-TDSIK--NVPNGLTSLSIN  140 (426)
T ss_pred             CCcEEEccCCCCcccCCch-hhhhhhheEccCccccc-----cc---ccccceEEeCCCC-Ccccc--cCcchHhheecc
Confidence            58888887763 21 1111 12467888877662 21     11   2457777765321 22211  111267777764


Q ss_pred             cCCCCceeEE---EECCCceEEEEecccceeeeecCC-CccEEEEe
Q 047476          229 KCDFNQYRYE---IAAPNLRFWKYSGTEGMFRVERQN-FLTEVELD  270 (463)
Q Consensus       229 ~c~~~~~~~~---i~aP~L~~l~~~g~~~~~~~~~~~-~L~~l~l~  270 (463)
                      ++.. .....   .--++|+.|.+.++........+| +|+.+.+.
T Consensus       141 ~~n~-~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls  185 (426)
T PRK15386        141 SYNP-ENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLH  185 (426)
T ss_pred             cccc-ccccccccccCCcccEEEecCCCcccCcccccccCcEEEec
Confidence            3321 11111   112578888887654332222333 47777664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=85.37  E-value=0.085  Score=55.64  Aligned_cols=64  Identities=16%  Similarity=0.193  Sum_probs=36.1

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecc
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKK  206 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~  206 (463)
                      ..+|.......+|+.|.|.++.+.  |..+..+.+|..|+++...+.  .+.-.+..|..++.+...+
T Consensus        81 ~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~--~~Pl~i~~lt~~~~~~~s~  146 (1081)
T KOG0618|consen   81 RSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG--PIPLVIEVLTAEEELAASN  146 (1081)
T ss_pred             hhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC--CCchhHHhhhHHHHHhhhc
Confidence            355655555667777777776543  445556777777777765442  2222344444555444443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=84.58  E-value=0.52  Score=51.32  Aligned_cols=81  Identities=16%  Similarity=0.136  Sum_probs=37.1

Q ss_pred             CceeEEEeeeeeeC-CCCCCCCCccceEEeccEee-chhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEE
Q 047476          151 VGLESLELFSCNIN-ASRFNNFIALKELSLGWIQL-SVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVI  227 (463)
Q Consensus       151 ~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~-~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i  227 (463)
                      ...++..+.++.+. .+.-..++.|++|-+....- -...-..++...|.|..|++++|.....+. .-+.+=+||.|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L  602 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL  602 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc
Confidence            34555555544332 22223455666666655421 001112224456666666666665444332 1111235666666


Q ss_pred             ecCC
Q 047476          228 DKCD  231 (463)
Q Consensus       228 ~~c~  231 (463)
                      .++.
T Consensus       603 ~~t~  606 (889)
T KOG4658|consen  603 SDTG  606 (889)
T ss_pred             cCCC
Confidence            5554

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=84.24  E-value=0.44  Score=48.79  Aligned_cols=39  Identities=23%  Similarity=0.446  Sum_probs=36.4

Q ss_pred             CccccccCCchHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476            5 DDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI   43 (463)
Q Consensus         5 ~~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l   43 (463)
                      ...|.|+.||-|+..+||++|+.++.+..+.+|+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            457999999999999999999999999999999999965

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=82.60  E-value=0.56  Score=46.31  Aligned_cols=161  Identities=20%  Similarity=0.134  Sum_probs=89.2

Q ss_pred             CceeEEEeeeeeeC-CCC-CCCC-CccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEE
Q 047476          151 VGLESLELFSCNIN-ASR-FNNF-IALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLV  226 (463)
Q Consensus       151 ~~L~~L~L~~~~~~-~~~-~~~l-~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~  226 (463)
                      ..++.|.+.+..+. .+. ...+ ++|+.|++.+..+.  .+..-+..+|.|+.|.+.++.- ..+. .....+.|+.|.
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhhee
Confidence            56888888877664 222 2334 38999999876442  2223467899999999999873 3332 221455899999


Q ss_pred             EecCCCCceeEEE--ECCC-ceEEEEeccc-ce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEE
Q 047476          227 IDKCDFNQYRYEI--AAPN-LRFWKYSGTE-GM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTV  300 (463)
Q Consensus       227 i~~c~~~~~~~~i--~aP~-L~~l~~~g~~-~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l  300 (463)
                      +++..+  ..+.-  ..++ |+++...+.. ..  ..+...+.+..+.+....        ...+...+..+++++.|.+
T Consensus       193 ls~N~i--~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~--------~~~~~~~~~~l~~l~~L~~  262 (394)
T COG4886         193 LSGNKI--SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK--------LEDLPESIGNLSNLETLDL  262 (394)
T ss_pred             ccCCcc--ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce--------eeeccchhccccccceecc
Confidence            988763  33322  2444 7777776652 11  122333333333322110        0011245566777888887


Q ss_pred             eccccccccCCCCCCCCCCCCceeEEEEec
Q 047476          301 CSFLLQVIPHAEEPFGMTVPLEVKHLTLNA  330 (463)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  330 (463)
                      +...+..++.      .....++++|.+..
T Consensus       263 s~n~i~~i~~------~~~~~~l~~L~~s~  286 (394)
T COG4886         263 SNNQISSISS------LGSLTNLRELDLSG  286 (394)
T ss_pred             cccccccccc------ccccCccCEEeccC
Confidence            7655543332      11112566666654

>PF13013 F-box-like_2: F-box-like domain

Probab=82.18  E-value=0.79  Score=35.79  Aligned_cols=30  Identities=20%  Similarity=0.143  Sum_probs=26.0

Q ss_pred             cccCCchHHHHHHHhcCCchhHHhhhcccc
Q 047476            9 MFSKLTNDLVTVIISYLPFKEAARTSILSR   38 (463)
Q Consensus         9 ~is~LPd~lL~~ILs~Lp~~d~~rts~lSr   38 (463)
                      .+.+||+||+..|+.+-...+...+...++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            377899999999999999998887776666

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=81.90  E-value=1.3  Score=23.88  Aligned_cols=22  Identities=23%  Similarity=0.166  Sum_probs=12.3

Q ss_pred             CCccceEEeccEeechhHHHHH
Q 047476          171 FIALKELSLGWIQLSVQSIREL  192 (463)
Q Consensus       171 l~~L~~L~L~~~~~~~~~l~~l  192 (463)
                      +++|++|+|+++.+++.+...+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            3567777777777766655443

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.30  E-value=0.94  Score=39.41  Aligned_cols=57  Identities=16%  Similarity=0.201  Sum_probs=41.8

Q ss_pred             cceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee---cccCCCCccEEEEecCC
Q 047476          174 LKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD---ITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       174 L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~---i~~~~~~L~~L~i~~c~  231 (463)
                      ++.++-+++.|...+++. +.+++.++.|.+.+|..+++..   +....++|+.|.|++|+
T Consensus       103 IeaVDAsds~I~~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~  162 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP  162 (221)
T ss_pred             EEEEecCCchHHHHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCC
Confidence            455556666666666666 4589999999999999887754   34456688888888887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.52  E-value=0.32  Score=46.66  Aligned_cols=112  Identities=25%  Similarity=0.270  Sum_probs=71.6

Q ss_pred             cceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHH-HHHHhcCCCceEEeecccCCCceeecc
Q 047476          139 AVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSI-RELLVQCPFLESLSLKKCWEIEYLDIT  216 (463)
Q Consensus       139 ~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l-~~lls~cp~Le~L~l~~c~~~~~~~i~  216 (463)
                      ..-.+|..+....+|..|+|..+.+. .|.|.+|..|++|++....+  +.+ ..+.++.+.|-.|++++.. +......
T Consensus       194 ~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRdNk-lke~Pde  270 (565)
T KOG0472|consen  194 LLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDE  270 (565)
T ss_pred             hhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHH--HhhHHHHhcccccceeeeccccc-cccCchH
Confidence            34568888888888888888877654 56888899999998876532  333 2344578888899998765 2222111


Q ss_pred             -cCCCCccEEEEecCCCCceeEEEECCCceEEEEeccc
Q 047476          217 -VPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTE  253 (463)
Q Consensus       217 -~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~  253 (463)
                       .-+.+|.+|++++.....-...+..-.|+.|.+.|.+
T Consensus       271 ~clLrsL~rLDlSNN~is~Lp~sLgnlhL~~L~leGNP  308 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDISSLPYSLGNLHLKFLALEGNP  308 (565)
T ss_pred             HHHhhhhhhhcccCCccccCCcccccceeeehhhcCCc
Confidence             1133688888887763222223333366666777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	463
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	6e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 1e-08
 Identities = 61/436 (13%), Positives = 115/436 (26%), Gaps = 151/436 (34%)

Query: 29  EAART-SILSRRWRHI-WLSTKK-------IEFLESFFVRDDDN---------------E 64
           +   +  +  +    I WL+ K        +E L+    + D N                
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 65  ETKQLHRSHFINFVHQ---------WIGQYNATIVKAFR-----LVFSRPVNFLVQNCIS 110
             +   R    +  ++              NA    AF      L+ +R      +    
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQ----NAKAWNAFNLSCKILLTTRF-----KQVTD 279

Query: 111 FAIARDVKELALDFHDPLWPEHGSEN--------------HEAVFDLPMHV--------- 147
           F  A     ++LD H         ++               E +   P  +         
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 148 -------YGHVGLE--------SLELFSCNINASRFNNF--------IALKELSLGWIQL 184
                  + HV  +        SL +         F+          I    LSL W  +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399

Query: 185 SVQSIRELLVQCPFLESLSLKKCWEIE--------YLDITVPNLRLKRL---VIDKCDFN 233
               +  ++ +       SL +    E        YL++ V       L   ++D     
Sbjct: 400 IKSDVMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD----- 451

Query: 234 QYR-------YEIAAPNLR--FWKYSG--TEGMFRVERQNFLTEVELDFA-LQ-----PD 276
            Y         ++  P L   F+ + G   + +   ER      V LDF  L+       
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS 511

Query: 277 FDEEIGEFLYELLRQLEIVR-------------VLTVCSFLLQVIPHA-EEPFGMTVPLE 322
                   +   L+QL+  +             V  +  FL ++  +     +      +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-----TD 566

Query: 323 VKHLTLNAGMHPHEYY 338
           +  + L   M   E  
Sbjct: 567 LLRIAL---MAEDEAI 579

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 50.3 bits (120), Expect = 6e-07
 Identities = 37/234 (15%), Positives = 74/234 (31%), Gaps = 44/234 (18%)

Query: 10  FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEETKQL 69
           +  L ++L+  I S L   E  + S + +RW  +                D+   +T  L
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL--------------ASDESLWQTLDL 54

Query: 70  HRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLW 129
              +    V          ++    + F  P +F+ Q          V+ + L       
Sbjct: 55  TGKNLHPDV-------TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLS------ 101

Query: 130 PEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFN---NFIALKELSLGW-IQLS 185
             +       +  +         L++L L    ++    N       L  L+L      S
Sbjct: 102 --NSVIEVSTLHGILSQC---SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS 156

Query: 186 VQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL------RLKRLVIDKCDFN 233
             +++ LL  C  L+ L+L  C++    +  V          + +L +     N
Sbjct: 157 EFALQTLLSSCSRLDELNLSWCFDFT--EKHVQVAVAHVSETITQLNLSGYRKN 208

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 5/83 (6%)

Query: 153 LESLELFSCNINASRF---NNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWE 209
           L  L L     +            ++ LS+ +   S   +  +L  C  L  L ++ C  
Sbjct: 434 LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493

Query: 210 IEY--LDITVPNLRLKRLVIDKC 230
            +   L        ++ L +  C
Sbjct: 494 GDKALLANASKLETMRSLWMSSC 516

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 46/357 (12%), Positives = 98/357 (27%), Gaps = 71/357 (19%)

Query: 8   DMFSKLTNDLVTVIISYLP-FKEAARTSILSRRWRHIWLSTKKIEFLESFFVRDDDNEET 66
            +      +++  + S++   K+    S++ + W  I    ++       F+ +      
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRR-----KVFIGNCYAVSP 58

Query: 67  KQLHRSHFINFVHQWIGQYNATIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHD 126
             + R  F                    +               FA    V +    +  
Sbjct: 59  ATVIR-RFPKVRS---------------VELK--------GKPHFADFNLVPDGWGGYVY 94

Query: 127 PLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRF----NNFIALKELSLGWI 182
           P      S                  LE + L    +          +F   K L L   
Sbjct: 95  PWIEAMSSSYT--------------WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140

Query: 183 -QLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAA 241
              S   +  +   C  L+ L L++    +     + +       +   + +    E++ 
Sbjct: 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200

Query: 242 PNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC 301
             L             V R   L  ++L+ A          E L  LL++   +  L   
Sbjct: 201 SALERL----------VTRCPNLKSLKLNRA-------VPLEKLATLLQRAPQLEELGTG 243

Query: 302 SFLLQVIPHAEEPFGMTVP--LEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN 356
            +  +V P       + +    E++ L+      P     +  +   C  L TL ++
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA---YLPAVYSVCSRLTTLNLS 297

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	463
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.96
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.78
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.78
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.7
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.69
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.68
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.67
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.66
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.61
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.58
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.57
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.54
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.54
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.53
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.51
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.5
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.48
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.45
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.43
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.42
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.42
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.38
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.38
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.36
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.36
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.33
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.31
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.31
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.3
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.29
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.29
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.27
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.27
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.2
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.19
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.18
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.16
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.16
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.13
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.1
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.1
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.03
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.03
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.02
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.01
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.99
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.99
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.98
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	97.97
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.95
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.91
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.89
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.88
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.84
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.82
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.79
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.78
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.76
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.75
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.67
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.65
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.64
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.64
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.58
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.57
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.53
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.47
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.46
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.41
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.37
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.32
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.31
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.27
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.17
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.99
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.9
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.9
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.89
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.89
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.81
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.78
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.78
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.7
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.68
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.63
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.61
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.45
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.44
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.29
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.22
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	95.28
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	94.98
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	94.96
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.23
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	92.92
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	92.48
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	89.41
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	87.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	87.45
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	81.87

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=3.4e-20  Score=191.96  Aligned_cols=47  Identities=26%  Similarity=0.507  Sum_probs=33.7

Q ss_pred             CCCCCcccccc----CCchHHHHHHHhcC-CchhHHhhhccccchhhhheecc
Q 047476            1 MADNDDVDMFS----KLTNDLVTVIISYL-PFKEAARTSILSRRWRHIWLSTK   48 (463)
Q Consensus         1 ~~~~~~~D~is----~LPd~lL~~ILs~L-p~~d~~rts~lSrrWr~lw~~~~   48 (463)
                      |++ ++.||++    +||||++.+||+|| |.+|++++++|||||++++...+
T Consensus         1 m~~-~~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~   52 (592)
T 3ogk_B            1 MED-PDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETR   52 (592)
T ss_dssp             ------------CCCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHC
T ss_pred             CCC-hhhhhHhhccCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccc
Confidence            553 4567777    89999999999999 89999999999999999865443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.80  E-value=2.2e-19  Score=185.89  Aligned_cols=38  Identities=13%  Similarity=0.394  Sum_probs=29.5

Q ss_pred             ccccccCCchHHHHHHHhcCC-chhHHhhhccccchhhh
Q 047476            6 DVDMFSKLTNDLVTVIISYLP-FKEAARTSILSRRWRHI   43 (463)
Q Consensus         6 ~~D~is~LPd~lL~~ILs~Lp-~~d~~rts~lSrrWr~l   43 (463)
                      ..|+++.||||+|.+||++|| .+|+++++.|||||+++
T Consensus         2 ~~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             --------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            359999999999999999999 99999999999999988

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=2.9e-18  Score=164.49  Aligned_cols=39  Identities=23%  Similarity=0.328  Sum_probs=35.1

Q ss_pred             ccccccCCchHHHHHHHhcCCchhHHhhhccccchhhhh
Q 047476            6 DVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIW   44 (463)
Q Consensus         6 ~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw   44 (463)
                      +...+++||||++.+||++|+.+|+++++.|||||+.+.
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~   43 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999999999985

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.98  E-value=9.1e-10  Score=104.78  Aligned_cols=125  Identities=17%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             HHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhH
Q 047476          111 FAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQS  188 (463)
Q Consensus       111 ~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~  188 (463)
                      .+...+++.|++....             ...+|..+..+++|++|+|+++.+.  +..+..+++|++|+|++..++  .
T Consensus        77 ~~~~~~l~~L~L~~n~-------------l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~  141 (328)
T 4fcg_A           77 DATQPGRVALELRSVP-------------LPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--A  141 (328)
T ss_dssp             HHTSTTCCEEEEESSC-------------CSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--C
T ss_pred             cccccceeEEEccCCC-------------chhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--c
Confidence            3334677888775321             2267888888999999999998775  345678999999999998765  3


Q ss_pred             HHHHHhcCCCceEEeecccCCCceeeccc----------CCCCccEEEEecCCCCceeEE---EECCCceEEEEecc
Q 047476          189 IRELLVQCPFLESLSLKKCWEIEYLDITV----------PNLRLKRLVIDKCDFNQYRYE---IAAPNLRFWKYSGT  252 (463)
Q Consensus       189 l~~lls~cp~Le~L~l~~c~~~~~~~i~~----------~~~~L~~L~i~~c~~~~~~~~---i~aP~L~~l~~~g~  252 (463)
                      +..-+.+++.|+.|++.+|...+.+....          .+++|+.|.+.+|.+.  .+.   -..++|++|.++++
T Consensus       142 lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N  216 (328)
T 4fcg_A          142 LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNS  216 (328)
T ss_dssp             CCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESS
T ss_pred             CcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCC
Confidence            44457889999999999987655443211          2557777777776531  111   12345555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.96  E-value=8.2e-09  Score=106.39  Aligned_cols=109  Identities=18%  Similarity=0.241  Sum_probs=68.6

Q ss_pred             CCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeCCCC
Q 047476           88 TIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASR  167 (463)
Q Consensus        88 ~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~  167 (463)
                      +.++.+.+......+..+......  .+++++|++....          ......++....+|++|++|+|.+|.+....
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~--~~~L~~L~L~~~~----------~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~  172 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKS--FKNFKVLVLSSCE----------GFSTDGLAAIAATCRNLKELDLRESDVDDVS  172 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHH--CTTCCEEEEESCE----------EEEHHHHHHHHHHCTTCCEEECTTCEEECCC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHh--CCCCcEEeCCCcC----------CCCHHHHHHHHHhCCCCCEEeCcCCccCCcc
Confidence            357777777543222112111111  3578888775321          0111124433446889999999988764321


Q ss_pred             -------CCCCCccceEEeccEe--echhHHHHHHhcCCCceEEeecccC
Q 047476          168 -------FNNFIALKELSLGWIQ--LSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       168 -------~~~l~~L~~L~L~~~~--~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                             ...+++|++|+|+++.  ++...+..++.+||.|+.|++.+|.
T Consensus       173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~  222 (594)
T 2p1m_B          173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV  222 (594)
T ss_dssp             GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTS
T ss_pred             hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCC
Confidence                   1267899999999885  6778888888889999999998873

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.95  E-value=1.2e-09  Score=104.27  Aligned_cols=196  Identities=18%  Similarity=0.150  Sum_probs=89.5

Q ss_pred             CceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCce-eecccCCCCccEEEE
Q 047476          151 VGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEY-LDITVPNLRLKRLVI  227 (463)
Q Consensus       151 ~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~-~~i~~~~~~L~~L~i  227 (463)
                      ++++.|++.++.+.  .+....+++|++|+|+++.+++..+..++.+||.|+.|++.+|.-... ...-..+++|++|.+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            34555555554443  122334555555555555555555555555555555555555531111 111122445555555


Q ss_pred             ecCC-CC---ceeEEEECCCceEEEEecc-cce-----eeeecCC-CccEEEEeeec-CCCCchhHHHHHHHHhhcCccc
Q 047476          228 DKCD-FN---QYRYEIAAPNLRFWKYSGT-EGM-----FRVERQN-FLTEVELDFAL-QPDFDEEIGEFLYELLRQLEIV  295 (463)
Q Consensus       228 ~~c~-~~---~~~~~i~aP~L~~l~~~g~-~~~-----~~~~~~~-~L~~l~l~~~~-~~~~~~~~~~~~~~ll~~l~~l  295 (463)
                      .+|. +.   ...+.-..|+|++|.++++ ...     ..+..+| +|+.+.+..+. ...     +..+...+..++++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~-----~~~l~~~~~~~~~L  224 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ-----KSDLSTLVRRCPNL  224 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSC-----HHHHHHHHHHCTTC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCC-----HHHHHHHHhhCCCC
Confidence            5552 11   0111112455555555554 211     1234456 66666665331 110     23444556667777


Q ss_pred             eEEEEeccc-cccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476          296 RVLTVCSFL-LQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       296 ~~L~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                      +.|.++++. +....  ...+.  ...+|++|.+..+... ...++ ..+..+|+|+.|++..
T Consensus       225 ~~L~l~~~~~l~~~~--~~~l~--~l~~L~~L~l~~~~~~-~~~~~-~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          225 VHLDLSDSVMLKNDC--FQEFF--QLNYLQHLSLSRCYDI-IPETL-LELGEIPTLKTLQVFG  281 (336)
T ss_dssp             SEEECTTCTTCCGGG--GGGGG--GCTTCCEEECTTCTTC-CGGGG-GGGGGCTTCCEEECTT
T ss_pred             CEEeCCCCCcCCHHH--HHHHh--CCCCCCEeeCCCCCCC-CHHHH-HHHhcCCCCCEEeccC
Confidence            777776543 21100  00000  0125777777654311 11122 3345677777777743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.93  E-value=7e-09  Score=99.34  Aligned_cols=235  Identities=15%  Similarity=0.046  Sum_probs=133.7

Q ss_pred             ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      +..+++|++|+|++|.+. .+.+..+++|++|++++..+..-.-   +..++.|+.|++.+|.....+.....+++|+.|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP---LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCGG---GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCchh---hccCCceeEEECCCCCCcccccchhhCCCCcEE
Confidence            556677888888877664 3446677888888888776533211   667888888888877655554444556678888


Q ss_pred             EEecCCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecc
Q 047476          226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSF  303 (463)
Q Consensus       226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~  303 (463)
                      .+.+|........-..++|++|.++++...  ..+..+++|+.+.+....-....         .+..+++++.|.+++.
T Consensus       161 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---------~~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          161 TVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDIT---------PVANMTRLNSLKIGNN  231 (347)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCG---------GGGGCTTCCEEECCSS
T ss_pred             EecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCc---------hhhcCCcCCEEEccCC
Confidence            887776321111113577777777765332  12455666777766543221110         1566778888888766


Q ss_pred             ccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhccccc
Q 047476          304 LLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIV  383 (463)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~  383 (463)
                      .+..++.      .....+|++|.+..+.-.    .+ ..+..+|+|+.|++......            .   +   ..
T Consensus       232 ~l~~~~~------~~~l~~L~~L~l~~n~l~----~~-~~~~~l~~L~~L~l~~n~l~------------~---~---~~  282 (347)
T 4fmz_A          232 KITDLSP------LANLSQLTWLEIGTNQIS----DI-NAVKDLTKLKMLNVGSNQIS------------D---I---SV  282 (347)
T ss_dssp             CCCCCGG------GTTCTTCCEEECCSSCCC----CC-GGGTTCTTCCEEECCSSCCC------------C---C---GG
T ss_pred             ccCCCcc------hhcCCCCCEEECCCCccC----CC-hhHhcCCCcCEEEccCCccC------------C---C---hh
Confidence            5543321      111126777777654211    11 23667788888877543211            0   0   00


Q ss_pred             cccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecc
Q 047476          384 LYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLS  428 (463)
Q Consensus       384 ~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~  428 (463)
                      +  ....+|+.+.+.+..-.....    ..+.+.+.|+.+.+...
T Consensus       283 ~--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n  321 (347)
T 4fmz_A          283 L--NNLSQLNSLFLNNNQLGNEDM----EVIGGLTNLTTLFLSQN  321 (347)
T ss_dssp             G--GGCTTCSEEECCSSCCCGGGH----HHHHTCTTCSEEECCSS
T ss_pred             h--cCCCCCCEEECcCCcCCCcCh----hHhhccccCCEEEccCC
Confidence            0  122667777777654332222    23445677887777654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.89  E-value=9.1e-08  Score=91.84  Aligned_cols=246  Identities=15%  Similarity=0.109  Sum_probs=154.5

Q ss_pred             eCCc-CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee---
Q 047476          142 DLPM-HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD---  214 (463)
Q Consensus       142 ~lp~-~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~---  214 (463)
                      .+|. .+..+++|++|+|+++.+.   +..+..+++|++|+|++..++.- -...+.+++.|+.|++.++. +..+.   
T Consensus        66 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~  143 (353)
T 2z80_A           66 YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLNLLGNP-YKTLGETS  143 (353)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEECTTCC-CSSSCSSC
T ss_pred             ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEECCCCC-CcccCchh
Confidence            3444 5667899999999998764   45678899999999999876531 12346889999999999885 33332   


Q ss_pred             cccCCCCccEEEEecCCCCceeEE---E-ECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHH
Q 047476          215 ITVPNLRLKRLVIDKCDFNQYRYE---I-AAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLY  286 (463)
Q Consensus       215 i~~~~~~L~~L~i~~c~~~~~~~~---i-~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~  286 (463)
                      .-..+++|+.|.+.+|. ....+.   + ..++|++|.+++....    ..+..+++|+.+.+....-.       ....
T Consensus       144 ~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-------~~~~  215 (353)
T 2z80_A          144 LFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-------LLLE  215 (353)
T ss_dssp             SCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-------THHH
T ss_pred             hhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-------cchh
Confidence            23457799999999985 123321   1 2578999999886533    23556788888888744321       1122


Q ss_pred             HHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC-CchhhHHHHhhhcCCCcceEEEEcCCCCCCCC
Q 047476          287 ELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH-PHEYYGINFMLKSCPSLQTLTINIGPGRRFPN  365 (463)
Q Consensus       287 ~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~  365 (463)
                      .+...+++++.|.+++..+...+....... ...-.++.+.+....- ......+...+..+|+|++|++....-...  
T Consensus       216 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i--  292 (353)
T 2z80_A          216 IFVDVTSSVECLELRDTDLDTFHFSELSTG-ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV--  292 (353)
T ss_dssp             HHHHHTTTEEEEEEESCBCTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC--
T ss_pred             hhhhhcccccEEECCCCccccccccccccc-cccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc--
Confidence            345678999999998876654432111000 0011456666654322 233456777789999999999965432110  


Q ss_pred             CCCCCCCCchhhhccccccccccccceeEEEEEe--eecchhhHHHHHHHHhc
Q 047476          366 YRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRG--FKGTMTEARFLNYLIFF  416 (463)
Q Consensus       366 ~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~--f~g~~~e~~l~~~ll~~  416 (463)
                                     +..++ ....+|+.+.+.+  +.+....+..+...+++
T Consensus       293 ---------------~~~~~-~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~  329 (353)
T 2z80_A          293 ---------------PDGIF-DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK  329 (353)
T ss_dssp             ---------------CTTTT-TTCTTCCEEECCSSCBCCCHHHHHHHHHHHHH
T ss_pred             ---------------CHHHH-hcCCCCCEEEeeCCCccCcCCCcHHHHHHHHh
Confidence                           00000 1236899999887  34554456555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.78  E-value=1e-08  Score=105.67  Aligned_cols=200  Identities=11%  Similarity=0.005  Sum_probs=89.9

Q ss_pred             cCCCceeEEEeeeeeeCCCC----CCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecc----------cCCCcee
Q 047476          148 YGHVGLESLELFSCNINASR----FNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKK----------CWEIEYL  213 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~~~~----~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~----------c~~~~~~  213 (463)
                      ..+++|++|+|++|.+....    +..+++|++|++. ..+++..+..+..+||.|+.|++.+          |..++..
T Consensus       290 ~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~  368 (592)
T 3ogk_B          290 PFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR  368 (592)
T ss_dssp             GGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH
T ss_pred             hhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH
Confidence            34445555555555432111    1345555555555 2234444555555555555555553          4333322


Q ss_pred             e---cccCCCCccEEEEecCCCCc---eeEEEECCCceEEEEecccc--ee-----------eeecCCCccEEEEeeecC
Q 047476          214 D---ITVPNLRLKRLVIDKCDFNQ---YRYEIAAPNLRFWKYSGTEG--MF-----------RVERQNFLTEVELDFALQ  274 (463)
Q Consensus       214 ~---i~~~~~~L~~L~i~~c~~~~---~~~~i~aP~L~~l~~~g~~~--~~-----------~~~~~~~L~~l~l~~~~~  274 (463)
                      .   +...+++|++|.+.++....   ..+.-.+|+|++|.+.+...  .+           .+..+++|+.+.+..+..
T Consensus       369 ~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~  448 (592)
T 3ogk_B          369 GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG  448 (592)
T ss_dssp             HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGG
T ss_pred             HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCC
Confidence            1   11224455555553332110   01111245566666543210  00           123355666666643221


Q ss_pred             CCCchhHHHHHHHHhhcCccceEEEEecccccc--ccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcce
Q 047476          275 PDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQV--IPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQT  352 (463)
Q Consensus       275 ~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~  352 (463)
                      . .   .+..+..+...+++++.|.++...+..  ++...     ....+|++|+|..+.-  +..++..+...+|+|+.
T Consensus       449 ~-l---~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~  517 (592)
T 3ogk_B          449 G-L---TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS-----RGCPNLQKLEMRGCCF--SERAIAAAVTKLPSLRY  517 (592)
T ss_dssp             G-C---CHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH-----TCCTTCCEEEEESCCC--BHHHHHHHHHHCSSCCE
T ss_pred             C-c---cHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH-----hcCcccCeeeccCCCC--cHHHHHHHHHhcCccCe
Confidence            0 0   033344445556666666665433221  00000     0001577777766531  23456666677777777


Q ss_pred             EEEEcCC
Q 047476          353 LTINIGP  359 (463)
Q Consensus       353 L~l~~~~  359 (463)
                      |+|....
T Consensus       518 L~ls~n~  524 (592)
T 3ogk_B          518 LWVQGYR  524 (592)
T ss_dssp             EEEESCB
T ss_pred             eECcCCc
Confidence            7776554

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.78  E-value=3.3e-09  Score=71.10  Aligned_cols=40  Identities=23%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             CccccccCCchHHHHHHHhcCCchhHHhhhccccchhhhh
Q 047476            5 DDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIW   44 (463)
Q Consensus         5 ~~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw   44 (463)
                      ...+.++.||+|++.+||++||.+|+++++.|||+|+.+.
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            3457789999999999999999999999999999999764

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.70  E-value=3.8e-08  Score=92.63  Aligned_cols=171  Identities=17%  Similarity=0.132  Sum_probs=96.2

Q ss_pred             CCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCC
Q 047476          143 LPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLR  221 (463)
Q Consensus       143 lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~  221 (463)
                      +| .+..+++|++|+|++|.+. .+.+..+++|+.|+|++..++.-.   -+..++.|+.|++.++. +..+.--..+++
T Consensus        56 l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~  130 (308)
T 1h6u_A           56 IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQSIKTLDLTSTQ-ITDVTPLAGLSN  130 (308)
T ss_dssp             CT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTTCCEEECTTSC-CCCCGGGTTCTT
T ss_pred             ch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCCCCEEECCCCC-CCCchhhcCCCC
Confidence            44 4566788899999888765 223677888899988888764321   36678888888888876 333332344668


Q ss_pred             ccEEEEecCCCCceeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476          222 LKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC  301 (463)
Q Consensus       222 L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~  301 (463)
                      |+.|.+.+|........-..++|+.|.++++...                    ..    .    . +..+++++.|.++
T Consensus       131 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~--------------------~~----~----~-l~~l~~L~~L~l~  181 (308)
T 1h6u_A          131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVS--------------------DL----T----P-LANLSKLTTLKAD  181 (308)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC--------------------CC----G----G-GTTCTTCCEEECC
T ss_pred             CCEEECCCCccCcCccccCCCCccEEEccCCcCC--------------------CC----h----h-hcCCCCCCEEECC
Confidence            8888888776311000012344555544443211                    00    0    0 4456666666666


Q ss_pred             ccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      +..+..++.    +  ....+|++|.+..+.-.    .+.. +..+|+|+.|++...
T Consensus       182 ~n~l~~~~~----l--~~l~~L~~L~L~~N~l~----~~~~-l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          182 DNKISDISP----L--ASLPNLIEVHLKNNQIS----DVSP-LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             SSCCCCCGG----G--GGCTTCCEEECTTSCCC----BCGG-GTTCTTCCEEEEEEE
T ss_pred             CCccCcChh----h--cCCCCCCEEEccCCccC----cccc-ccCCCCCCEEEccCC
Confidence            554443321    0  01115666666543211    1111 567777777777654

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.69  E-value=7.4e-08  Score=96.22  Aligned_cols=120  Identities=13%  Similarity=0.109  Sum_probs=56.9

Q ss_pred             ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      +..+++|++|+|++|.+. .+.+..+++|++|++++..+..-.  . +.+++.|+.|++.+|. +..+..-..+++|++|
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L  139 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTLFNNQ-ITDIDPLKNLTNLNRL  139 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred             hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEECCCCC-CCCChHHcCCCCCCEE
Confidence            344556666666666543 122555666666666665543211  1 5566666666666654 2222222334566666


Q ss_pred             EEecCCCCceeEEEECCCceEEEEecccce-eeeecCCCccEEEEe
Q 047476          226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGM-FRVERQNFLTEVELD  270 (463)
Q Consensus       226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~  270 (463)
                      .+.+|.+......-..++|+.|.+.+.... ..+..+++|+.+.+.
T Consensus       140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  185 (466)
T ss_dssp             EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence            666554211000012345555555432211 123344455555544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.68  E-value=4.7e-08  Score=92.85  Aligned_cols=189  Identities=16%  Similarity=0.122  Sum_probs=127.4

Q ss_pred             CceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEE
Q 047476          151 VGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVI  227 (463)
Q Consensus       151 ~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i  227 (463)
                      .++++|+|.++.+.  ++.+..+++|++|+|++..++  .+...+.+++.|+.|++.++. +..+. .-..+++|+.|.+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI  157 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence            68999999999875  445677999999999998775  344456789999999999986 33332 2234679999999


Q ss_pred             ecCCCCceeE------------EEECCCceEEEEecccce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcC
Q 047476          228 DKCDFNQYRY------------EIAAPNLRFWKYSGTEGM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQL  292 (463)
Q Consensus       228 ~~c~~~~~~~------------~i~aP~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l  292 (463)
                      .+|.. ...+            .-..++|+.|.++++...   ..+..+++|+.+.+....-....        .-+..+
T Consensus       158 ~~n~~-~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~--------~~l~~l  228 (328)
T 4fcg_A          158 RACPE-LTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG--------PAIHHL  228 (328)
T ss_dssp             EEETT-CCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC--------GGGGGC
T ss_pred             CCCCC-ccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc--------hhhccC
Confidence            99863 1111            113889999999886432   23667888999998754322111        125678


Q ss_pred             ccceEEEEecccc-ccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          293 EIVRVLTVCSFLL-QVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       293 ~~l~~L~l~~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      ++++.|.++++.+ ..++..-     ....+|++|.+..+...   ..+..-+..+|+|+.|+|....
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~-----~~l~~L~~L~L~~n~~~---~~~p~~~~~l~~L~~L~L~~n~  288 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIF-----GGRAPLKRLILKDCSNL---LTLPLDIHRLTQLEKLDLRGCV  288 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCT-----TCCCCCCEEECTTCTTC---CBCCTTGGGCTTCCEEECTTCT
T ss_pred             CCCCEEECcCCcchhhhHHHh-----cCCCCCCEEECCCCCch---hhcchhhhcCCCCCEEeCCCCC
Confidence            9999999987443 2222211     11127889988764321   1233346789999999996543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.67  E-value=1.1e-07  Score=94.91  Aligned_cols=231  Identities=18%  Similarity=0.109  Sum_probs=114.7

Q ss_pred             ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      +..+++|++|+|++|.+. .+.+..+++|++|+++++.+..-.   -+.+++.|+.|.+.+.  ...+.--..+++|+.|
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~l~~L~~L~l~~~--~~~~~~~~~l~~L~~L  182 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLSFGNQ--VTDLKPLANLTTLERL  182 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCG---GGTTCTTCSEEEEEES--CCCCGGGTTCTTCCEE
T ss_pred             hcCCCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCCh---hhccCCcccEeecCCc--ccCchhhccCCCCCEE
Confidence            344555666666555443 122445566666666655543211   1455666666665432  1111112334567777


Q ss_pred             EEecCCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecc
Q 047476          226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSF  303 (463)
Q Consensus       226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~  303 (463)
                      .+.+|.+......-..++|++|.+.++...  ..+..+++|+.+.+....-...         ..+..+++++.|.+++.
T Consensus       183 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          183 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI---------GTLASLTNLTDLDLANN  253 (466)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC---------GGGGGCTTCSEEECCSS
T ss_pred             ECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccc---------hhhhcCCCCCEEECCCC
Confidence            776665321111112466777766655322  1244566677766653321111         12456677777777665


Q ss_pred             ccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhccccc
Q 047476          304 LLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIV  383 (463)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~  383 (463)
                      .+..++.      .....+|++|.+..+.-.    .+.. +..+|+|+.|++......            .      ...
T Consensus       254 ~l~~~~~------~~~l~~L~~L~l~~n~l~----~~~~-~~~l~~L~~L~L~~n~l~------------~------~~~  304 (466)
T 1o6v_A          254 QISNLAP------LSGLTKLTELKLGANQIS----NISP-LAGLTALTNLELNENQLE------------D------ISP  304 (466)
T ss_dssp             CCCCCGG------GTTCTTCSEEECCSSCCC----CCGG-GTTCTTCSEEECCSSCCS------------C------CGG
T ss_pred             ccccchh------hhcCCCCCEEECCCCccC----cccc-ccCCCccCeEEcCCCccc------------C------chh
Confidence            4432221      111126777777543211    1111 567777887777543211            0      000


Q ss_pred             cccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecc
Q 047476          384 LYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLS  428 (463)
Q Consensus       384 ~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~  428 (463)
                      +  ....+|+.+.+.+-.-.... .     +.+.+.|+++.+...
T Consensus       305 ~--~~l~~L~~L~L~~n~l~~~~-~-----~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          305 I--SNLKNLTYLTLYFNNISDIS-P-----VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             G--GGCTTCSEEECCSSCCSCCG-G-----GGGCTTCCEEECCSS
T ss_pred             h--cCCCCCCEEECcCCcCCCch-h-----hccCccCCEeECCCC
Confidence            1  12367888888765432211 1     467788888888644

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.66  E-value=2.4e-09  Score=106.75  Aligned_cols=39  Identities=18%  Similarity=-0.019  Sum_probs=21.5

Q ss_pred             cceeEEEEEeeecchhh-HHHHHHHHhccccccceeeecc
Q 047476          390 SSLRVVNVRGFKGTMTE-ARFLNYLIFFGNVLQELNLYLS  428 (463)
Q Consensus       390 ~~Lk~V~i~~f~g~~~e-~~l~~~ll~~a~~L~~m~i~~~  428 (463)
                      .+|+.+.+.+-.-.... ..+.+.+-...+.|+++.+...
T Consensus       341 ~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  380 (461)
T 1z7x_W          341 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC  380 (461)
T ss_dssp             SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             CCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC
Confidence            57777777655433322 2333433333667887777643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.61  E-value=7.6e-07  Score=90.68  Aligned_cols=205  Identities=17%  Similarity=0.106  Sum_probs=136.4

Q ss_pred             CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---eccc
Q 047476          144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITV  217 (463)
Q Consensus       144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~  217 (463)
                      |..+..+++|++|+|+++.+.   +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+   ..-.
T Consensus        43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~  120 (549)
T 2z81_A           43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS-SSWFGPLSSLKYLNLMGNP-YQTLGVTSLFP  120 (549)
T ss_dssp             SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC-HHHHTTCTTCCEEECTTCC-CSSSCSSCSCT
T ss_pred             hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC-HHHhccCCCCcEEECCCCc-ccccchhhhhh
Confidence            456678899999999998764   456789999999999998765322 2346889999999999986 3322   2234


Q ss_pred             CCCCccEEEEecCCCCceeEE----EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476          218 PNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELL  289 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll  289 (463)
                      .+++|+.|.+.+|.. ...+.    -..++|++|.+.+....    ..+..+++|+.+.+......       .....+.
T Consensus       121 ~l~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-------~~~~~~~  192 (549)
T 2z81_A          121 NLTNLQTLRIGNVET-FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-------FLLEIFA  192 (549)
T ss_dssp             TCTTCCEEEEEESSS-CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-------THHHHHH
T ss_pred             ccCCccEEECCCCcc-ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-------ccchhhH
Confidence            567999999999862 22221    12578999999876543    23556777888888744321       1122345


Q ss_pred             hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC-CchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH-PHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      ..+++++.|.+++..+........+.. ....++++|.+....- ......+...++.+++|+.|++....
T Consensus       193 ~~l~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~  262 (549)
T 2z81_A          193 DILSSVRYLELRDTNLARFQFSPLPVD-EVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT  262 (549)
T ss_dssp             HSTTTBSEEEEESCBCTTCCCCCCSSC-CCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred             hhcccccEEEccCCccccccccccchh-hhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence            679999999998876654322111110 0112688888875432 22335667777888999999887653

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.58  E-value=9.1e-08  Score=91.51  Aligned_cols=250  Identities=15%  Similarity=0.098  Sum_probs=163.2

Q ss_pred             hCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHH
Q 047476          114 ARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIREL  192 (463)
Q Consensus       114 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~l  192 (463)
                      -..++++++.-..             ...+| .+..+++|++|+|++|.+. .+.+..+++|++|+|+++.++.-  . -
T Consensus        43 l~~L~~L~l~~~~-------------i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~  105 (347)
T 4fmz_A           43 LESITKLVVAGEK-------------VASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-A  105 (347)
T ss_dssp             HTTCSEEECCSSC-------------CCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-G
T ss_pred             cccccEEEEeCCc-------------cccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-H
Confidence            4688888885321             12344 3567889999999999775 23377899999999999877442  1 3


Q ss_pred             HhcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeE--EEECCCceEEEEecccce--eeeecCCCccEEE
Q 047476          193 LVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRY--EIAAPNLRFWKYSGTEGM--FRVERQNFLTEVE  268 (463)
Q Consensus       193 ls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~--~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~  268 (463)
                      +.+++.|+.|++.++. +..+.....+++|+.|.+.+|.. ...+  .-..++|++|.+.++...  ..+..+++|+.+.
T Consensus       106 ~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  183 (347)
T 4fmz_A          106 LQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHN-LSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS  183 (347)
T ss_dssp             GTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEECTTCTT-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             HcCCCcCCEEECcCCc-ccCchhhccCCceeEEECCCCCC-cccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence            7899999999999986 33333345577999999999863 1111  123688999998876432  2266788899998


Q ss_pred             EeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCC
Q 047476          269 LDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCP  348 (463)
Q Consensus       269 l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P  348 (463)
                      +....-....         .+..+++++.|.+.+..+..++.      .....+|++|.+..+.-.    .+.. +..+|
T Consensus       184 l~~n~l~~~~---------~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~L~~L~l~~n~l~----~~~~-~~~l~  243 (347)
T 4fmz_A          184 LNYNQIEDIS---------PLASLTSLHYFTAYVNQITDITP------VANMTRLNSLKIGNNKIT----DLSP-LANLS  243 (347)
T ss_dssp             CTTSCCCCCG---------GGGGCTTCCEEECCSSCCCCCGG------GGGCTTCCEEECCSSCCC----CCGG-GTTCT
T ss_pred             ccCCcccccc---------cccCCCccceeecccCCCCCCch------hhcCCcCCEEEccCCccC----CCcc-hhcCC
Confidence            8744322111         16678999999997765443321      111127899998764321    1222 78999


Q ss_pred             CcceEEEEcCCCCCCCCCCCCCCCCchhhhccccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecc
Q 047476          349 SLQTLTINIGPGRRFPNYRPPFELDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLS  428 (463)
Q Consensus       349 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~  428 (463)
                      +|++|++.......         .         ..+  ....+|+.+.+.+-.-..-      -.+.+.+.|+.+.+...
T Consensus       244 ~L~~L~l~~n~l~~---------~---------~~~--~~l~~L~~L~l~~n~l~~~------~~~~~l~~L~~L~L~~n  297 (347)
T 4fmz_A          244 QLTWLEIGTNQISD---------I---------NAV--KDLTKLKMLNVGSNQISDI------SVLNNLSQLNSLFLNNN  297 (347)
T ss_dssp             TCCEEECCSSCCCC---------C---------GGG--TTCTTCCEEECCSSCCCCC------GGGGGCTTCSEEECCSS
T ss_pred             CCCEEECCCCccCC---------C---------hhH--hcCCCcCEEEccCCccCCC------hhhcCCCCCCEEECcCC
Confidence            99999996542210         0         011  1236788888886543321      13567788999888754

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.57  E-value=6.6e-09  Score=103.58  Aligned_cols=258  Identities=17%  Similarity=0.096  Sum_probs=127.6

Q ss_pred             CceeEEEeeeeeeCCC-------CCCCCCccceEEeccEeechhHHHHHHh----cCCCceEEeecccCCCcee------
Q 047476          151 VGLESLELFSCNINAS-------RFNNFIALKELSLGWIQLSVQSIRELLV----QCPFLESLSLKKCWEIEYL------  213 (463)
Q Consensus       151 ~~L~~L~L~~~~~~~~-------~~~~l~~L~~L~L~~~~~~~~~l~~lls----~cp~Le~L~l~~c~~~~~~------  213 (463)
                      ++|++|+|++|.+...       .+..+++|++|+|++..+++.....+..    ..+.|+.|++.+|. ++..      
T Consensus       142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~  220 (461)
T 1z7x_W          142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLC  220 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHH
T ss_pred             CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHH
Confidence            4688888877766532       1234677888888877776554444433    35578888888774 2221      


Q ss_pred             ecccCCCCccEEEEecCCCCcee-------EEEECCCceEEEEeccccee--------eeecCCCccEEEEeeecCCCCc
Q 047476          214 DITVPNLRLKRLVIDKCDFNQYR-------YEIAAPNLRFWKYSGTEGMF--------RVERQNFLTEVELDFALQPDFD  278 (463)
Q Consensus       214 ~i~~~~~~L~~L~i~~c~~~~~~-------~~i~aP~L~~l~~~g~~~~~--------~~~~~~~L~~l~l~~~~~~~~~  278 (463)
                      ..-..+++|++|.+++|.+....       +.-..++|++|.++++....        .+..+++|+.+.+....   ..
T Consensus       221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~---i~  297 (461)
T 1z7x_W          221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE---LG  297 (461)
T ss_dssp             HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC---CH
T ss_pred             HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC---Cc
Confidence            11123457888888777532110       00125677777777653221        13346777777775321   11


Q ss_pred             hhHHHHHHHHh-hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCC-chhhHHHHhhhc-CCCcceEEE
Q 047476          279 EEIGEFLYELL-RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHP-HEYYGINFMLKS-CPSLQTLTI  355 (463)
Q Consensus       279 ~~~~~~~~~ll-~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~l~~lL~~-~P~L~~L~l  355 (463)
                      ......+...+ ...++++.|.++++.+.......-+.......+|++|++..+.-. .....+...++. +|+|++|++
T Consensus       298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  377 (461)
T 1z7x_W          298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL  377 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEEC
Confidence            10011222222 233578888887654432110000000000016777777654221 112334444443 678888887


Q ss_pred             EcCCCCCCCCCCCCCCCCchhhhcc-ccccccccccceeEEEEEeeecch-hhHHHHHHHHhccccccceeeec
Q 047476          356 NIGPGRRFPNYRPPFELDPEKCWTK-NIVLYPCVTSSLRVVNVRGFKGTM-TEARFLNYLIFFGNVLQELNLYL  427 (463)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~w~~-~~~~~~c~~~~Lk~V~i~~f~g~~-~e~~l~~~ll~~a~~L~~m~i~~  427 (463)
                      .....            ... .... ...+..  ..+|+++.+.+-.-+. ....+++.+-++...|+++.+.-
T Consensus       378 ~~n~i------------~~~-~~~~l~~~l~~--~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~  436 (461)
T 1z7x_W          378 ADCDV------------SDS-SCSSLAATLLA--NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYD  436 (461)
T ss_dssp             TTSCC------------CHH-HHHHHHHHHHH--CCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             CCCCC------------Chh-hHHHHHHHHHh--CCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecc
Confidence            44321            110 0000 000111  2677888777654333 33344444444455677777653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.54  E-value=1.9e-07  Score=92.94  Aligned_cols=178  Identities=16%  Similarity=0.100  Sum_probs=80.0

Q ss_pred             CCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEe
Q 047476          149 GHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVID  228 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~  228 (463)
                      .+++|++|+|+++.+....+..+++|++|+|++..++.-.    +..++.|+.|.+.++. +..+.+ ..+++|+.|.+.
T Consensus        83 ~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l~l-~~l~~L~~L~l~  156 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEIDV-SHNTQLTELDCH  156 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCCCC-TTCTTCCEEECT
T ss_pred             cCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-cceecc-ccCCcCCEEECC
Confidence            3445555555555443323444555555555554442211    3445555555555543 222222 223455555555


Q ss_pred             cCCCCceeEEE-ECCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccc
Q 047476          229 KCDFNQYRYEI-AAPNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQ  306 (463)
Q Consensus       229 ~c~~~~~~~~i-~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~  306 (463)
                      +|.. ...+.+ ..++|+.|.+++.... +.+..+++|+.+.+....-...          -+..+++++.|.+++..+.
T Consensus       157 ~n~~-~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~----------~l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          157 LNKK-ITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL----------DLNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             TCSC-CCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC----------CCTTCTTCSEEECCSSCCS
T ss_pred             CCCc-ccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee----------ccccCCCCCEEECcCCccc
Confidence            5531 122222 2355566655554321 2344555566655543211100          0345666666666655544


Q ss_pred             cccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          307 VIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       307 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      .++.       ....+|+.|.+..+.-.    .+  -+..+++|+.|++.
T Consensus       226 ~ip~-------~~l~~L~~L~l~~N~l~----~~--~~~~l~~L~~L~l~  262 (457)
T 3bz5_A          226 EIDV-------TPLTQLTYFDCSVNPLT----EL--DVSTLSKLTTLHCI  262 (457)
T ss_dssp             CCCC-------TTCTTCSEEECCSSCCS----CC--CCTTCTTCCEEECT
T ss_pred             ccCc-------cccCCCCEEEeeCCcCC----Cc--CHHHCCCCCEEecc
Confidence            3321       11125777776543211    11  14456666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.54  E-value=2.7e-07  Score=89.83  Aligned_cols=193  Identities=15%  Similarity=0.070  Sum_probs=92.7

Q ss_pred             ccCCCceeEEEeeeeeeC--CC-CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCcc
Q 047476          147 VYGHVGLESLELFSCNIN--AS-RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLK  223 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~--~~-~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~  223 (463)
                      +..+++|++|+|+++.+.  ++ .+..+++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+.+ ...++|+
T Consensus       113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~L~  189 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNR-LTHVDL-SLIPSLF  189 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSC-CSBCCG-GGCTTCS
T ss_pred             hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCc-CCcccc-ccccccc
Confidence            445667777777776554  12 2456777777777766543211 1224566777777777654 222222 1133555


Q ss_pred             EEEEecCCCC-----------------ceeEEE-ECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHH
Q 047476          224 RLVIDKCDFN-----------------QYRYEI-AAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGE  283 (463)
Q Consensus       224 ~L~i~~c~~~-----------------~~~~~i-~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~  283 (463)
                      .|.+.++...                 ...+.. ..++|+.|.+.+....  ..+..+++|+.+.+....-...      
T Consensus       190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~------  263 (390)
T 3o6n_A          190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------  263 (390)
T ss_dssp             EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------
T ss_pred             eeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCc------
Confidence            5555444311                 111111 1245555555544221  1234455666666553211100      


Q ss_pred             HHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          284 FLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       284 ~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                       ....+..+++++.|.+++..+..++....     ...+|++|.+..+.-    ..+..-+..+|+|++|++...
T Consensus       264 -~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~l~~L~~L~L~~n~l----~~~~~~~~~l~~L~~L~L~~N  328 (390)
T 3o6n_A          264 -MYHPFVKMQRLERLYISNNRLVALNLYGQ-----PIPTLKVLDLSHNHL----LHVERNQPQFDRLENLYLDHN  328 (390)
T ss_dssp             -ESGGGTTCSSCCEEECCSSCCCEEECSSS-----CCTTCCEEECCSSCC----CCCGGGHHHHTTCSEEECCSS
T ss_pred             -ChhHccccccCCEEECCCCcCcccCcccC-----CCCCCCEEECCCCcc----eecCccccccCcCCEEECCCC
Confidence             01124456666777666655443332111     112677777765421    122223455678888877543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.53  E-value=3.7e-08  Score=92.52  Aligned_cols=242  Identities=19%  Similarity=0.158  Sum_probs=143.3

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC--C-CCCCCCCccceEEeccEeechh-HHHHHHhcCCCceEEeecccCCCceee-c
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN--A-SRFNNFIALKELSLGWIQLSVQ-SIRELLVQCPFLESLSLKKCWEIEYLD-I  215 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~--~-~~~~~l~~L~~L~L~~~~~~~~-~l~~lls~cp~Le~L~l~~c~~~~~~~-i  215 (463)
                      ..+|..+.  ++|++|+|+++.+.  + ..+..+++|++|+|++..++.. .....+.+++.|+.|++.++. +..+. .
T Consensus        20 ~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~   96 (306)
T 2z66_A           20 TSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSN   96 (306)
T ss_dssp             SSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEE
T ss_pred             ccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhh
Confidence            34565443  58999999998765  2 2367899999999998876421 112234578999999999886 33322 1


Q ss_pred             ccCCCCccEEEEecCCCCc-e--eEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHH
Q 047476          216 TVPNLRLKRLVIDKCDFNQ-Y--RYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYEL  288 (463)
Q Consensus       216 ~~~~~~L~~L~i~~c~~~~-~--~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l  288 (463)
                      -..+++|+.|.+.++.... .  ...-..++|++|.+++....    ..+..+++|+.+.+....-.      +......
T Consensus        97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~  170 (306)
T 2z66_A           97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ------ENFLPDI  170 (306)
T ss_dssp             EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEG------GGEECSC
T ss_pred             cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccc------cccchhH
Confidence            2346799999998875310 0  01123578999998876533    22556788888887632110      0001123


Q ss_pred             hhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCC
Q 047476          289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRP  368 (463)
Q Consensus       289 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~  368 (463)
                      +..+++++.|.+++..+..+...  .+.  ...+|++|.+..+.-.. .  ....+..+|+|+.|++........     
T Consensus       171 ~~~l~~L~~L~Ls~n~l~~~~~~--~~~--~l~~L~~L~L~~N~l~~-~--~~~~~~~l~~L~~L~L~~N~l~~~-----  238 (306)
T 2z66_A          171 FTELRNLTFLDLSQCQLEQLSPT--AFN--SLSSLQVLNMSHNNFFS-L--DTFPYKCLNSLQVLDYSLNHIMTS-----  238 (306)
T ss_dssp             CTTCTTCCEEECTTSCCCEECTT--TTT--TCTTCCEEECTTSCCSB-C--CSGGGTTCTTCCEEECTTSCCCBC-----
T ss_pred             HhhCcCCCEEECCCCCcCCcCHH--Hhc--CCCCCCEEECCCCccCc-c--ChhhccCcccCCEeECCCCCCccc-----
Confidence            56788999999987665543211  111  11278888886543211 0  011257789999999864432110     


Q ss_pred             CCCCCchhhhccccccccccccceeEEEEEe--eecchhhHHHHHHHHh
Q 047476          369 PFELDPEKCWTKNIVLYPCVTSSLRVVNVRG--FKGTMTEARFLNYLIF  415 (463)
Q Consensus       369 ~~~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~--f~g~~~e~~l~~~ll~  415 (463)
                          .       ...+ .....+|+.+.+.|  +.++.....|.+.+-+
T Consensus       239 ----~-------~~~~-~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~  275 (306)
T 2z66_A          239 ----K-------KQEL-QHFPSSLAFLNLTQNDFACTCEHQSFLQWIKD  275 (306)
T ss_dssp             ----S-------SSSC-CCCCTTCCEEECTTCCEECSGGGHHHHHHHHH
T ss_pred             ----C-------HHHH-HhhhccCCEEEccCCCeecccChHHHHHHHHh
Confidence                0       0000 11124789998886  5566555666666543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.51  E-value=2.3e-07  Score=95.03  Aligned_cols=238  Identities=15%  Similarity=0.111  Sum_probs=113.8

Q ss_pred             CCcCccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee----cccC
Q 047476          143 LPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD----ITVP  218 (463)
Q Consensus       143 lp~~l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~----i~~~  218 (463)
                      +|..+..+ +|++|++.+|.+..-....+++|+.|++.+..+....-.   ..+|.|+.|++.++.- ....    ....
T Consensus       297 l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l-~~~~~~~~~~~~  371 (570)
T 2z63_A          297 VKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGL-SFKGCCSQSDFG  371 (570)
T ss_dssp             CCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCC-BEEEEEEHHHHT
T ss_pred             hhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCcc-Cccccccccccc
Confidence            44444444 666666666655422223566666666665543211000   4566677777666642 2211    1123


Q ss_pred             CCCccEEEEecCCCCc-eeEEEECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcC
Q 047476          219 NLRLKRLVIDKCDFNQ-YRYEIAAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQL  292 (463)
Q Consensus       219 ~~~L~~L~i~~c~~~~-~~~~i~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l  292 (463)
                      +++|+.|.+.+|.... ....-..++|++|.+.++...     ..+..+++|+.+.+....-..       .....+..+
T Consensus       372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l  444 (570)
T 2z63_A          372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------AFNGIFNGL  444 (570)
T ss_dssp             CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEE-------CCTTTTTTC
T ss_pred             cCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccc-------cchhhhhcC
Confidence            4567777776665211 011123566777766654321     124455666666665321100       001224556


Q ss_pred             ccceEEEEeccccc--cccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCC
Q 047476          293 EIVRVLTVCSFLLQ--VIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPF  370 (463)
Q Consensus       293 ~~l~~L~l~~~~~~--~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~  370 (463)
                      ++++.|.+.+..+.  .++..-   .  ...+|+.|++..+.-.   ......+..+|+|+.|++........       
T Consensus       445 ~~L~~L~l~~n~l~~~~~p~~~---~--~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~-------  509 (570)
T 2z63_A          445 SSLEVLKMAGNSFQENFLPDIF---T--ELRNLTFLDLSQCQLE---QLSPTAFNSLSSLQVLNMASNQLKSV-------  509 (570)
T ss_dssp             TTCCEEECTTCEEGGGEECSCC---T--TCTTCCEEECTTSCCC---EECTTTTTTCTTCCEEECCSSCCSCC-------
T ss_pred             CcCcEEECcCCcCccccchhhh---h--cccCCCEEECCCCccc---cCChhhhhcccCCCEEeCCCCcCCCC-------
Confidence            77777777665443  122110   0  1115777776543211   01123456677788777754422110       


Q ss_pred             CCCchhhhccccccccccccceeEEEEEe--eecchhhHHHH-HHHHhccc
Q 047476          371 ELDPEKCWTKNIVLYPCVTSSLRVVNVRG--FKGTMTEARFL-NYLIFFGN  418 (463)
Q Consensus       371 ~~~~~~~w~~~~~~~~c~~~~Lk~V~i~~--f~g~~~e~~l~-~~ll~~a~  418 (463)
                        .       ...+  ....+|+.+.+.+  +.+......++ ..+-.+..
T Consensus       510 --~-------~~~~--~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~  549 (570)
T 2z63_A          510 --P-------DGIF--DRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ  549 (570)
T ss_dssp             --C-------TTTT--TTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGG
T ss_pred             --C-------HHHh--hcccCCcEEEecCCcccCCCcchHHHHHHHHhccc
Confidence              0       0000  1126788888876  45555566666 55544443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.50  E-value=3.4e-08  Score=96.07  Aligned_cols=63  Identities=16%  Similarity=0.097  Sum_probs=36.5

Q ss_pred             CccCCCceeEEEeeeeeeC------CCC-------CCCCCccceEEeccEeechh---HHHHHHhcCCCceEEeecccC
Q 047476          146 HVYGHVGLESLELFSCNIN------ASR-------FNNFIALKELSLGWIQLSVQ---SIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~------~~~-------~~~l~~L~~L~L~~~~~~~~---~l~~lls~cp~Le~L~l~~c~  208 (463)
                      .+..+++|++|+|++|.+.      |..       +..+++|++|+|++..++..   .+...+..|+.|+.|+|.+|.
T Consensus        55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            3445666777777665332      111       13566777777776666443   344455667777777777665

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.48  E-value=6.9e-08  Score=93.89  Aligned_cols=106  Identities=14%  Similarity=0.085  Sum_probs=72.6

Q ss_pred             ccCCCceeEEEeeeeeeCCC-------CCCCCCccceEEeccEeechh---HHHHHHhcC---------CCceEEeeccc
Q 047476          147 VYGHVGLESLELFSCNINAS-------RFNNFIALKELSLGWIQLSVQ---SIRELLVQC---------PFLESLSLKKC  207 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~~-------~~~~l~~L~~L~L~~~~~~~~---~l~~lls~c---------p~Le~L~l~~c  207 (463)
                      +..+++|++|+|+++.+...       .+..+++|++|+|+++.++..   .+...+..+         |.|+.|.+.+|
T Consensus        90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n  169 (386)
T 2ca6_A           90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  169 (386)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence            35788999999999987653       234689999999999988643   455556666         99999999998


Q ss_pred             CCCceeec------ccCCCCccEEEEecCCCCcee-------EEEECCCceEEEEeccc
Q 047476          208 WEIEYLDI------TVPNLRLKRLVIDKCDFNQYR-------YEIAAPNLRFWKYSGTE  253 (463)
Q Consensus       208 ~~~~~~~i------~~~~~~L~~L~i~~c~~~~~~-------~~i~aP~L~~l~~~g~~  253 (463)
                      . ++...+      -..+++|+.|.+.+|.+....       ..-..|+|+.|.++++.
T Consensus       170 ~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~  227 (386)
T 2ca6_A          170 R-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  227 (386)
T ss_dssp             C-CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             C-CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence            6 321111      123569999999988742111       11134667777766553

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.46  E-value=3.2e-07  Score=91.22  Aligned_cols=187  Identities=18%  Similarity=0.161  Sum_probs=87.5

Q ss_pred             ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCC
Q 047476          147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLR  221 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~  221 (463)
                      +..+++|++|+|+++.+.   +..+..+++|++|+|++..++.- -...+.++|.|+.|++.+|..++.+..  -..+++
T Consensus       119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~  197 (452)
T 3zyi_A          119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFN  197 (452)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTT
T ss_pred             ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCC
Confidence            334555666666555443   22244556666666665543210 011234566666666666555544431  223456


Q ss_pred             ccEEEEecCCCCceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceE
Q 047476          222 LKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRV  297 (463)
Q Consensus       222 L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~  297 (463)
                      |+.|.+++|.+....-.-..++|+.|.++++...    ..+..+++|+.+.+....-....       ...+..+++++.
T Consensus       198 L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~  270 (452)
T 3zyi_A          198 LKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-------RNAFDGLASLVE  270 (452)
T ss_dssp             CCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-------TTTTTTCTTCCE
T ss_pred             CCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-------HHHhcCCCCCCE
Confidence            6666666665321110112456666666665332    12445566666666422110000       012345667777


Q ss_pred             EEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhh
Q 047476          298 LTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLK  345 (463)
Q Consensus       298 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~  345 (463)
                      |.|+++.+..++...  +..  ..+|+.|.|..+.-  ..+..++...++
T Consensus       271 L~L~~N~l~~~~~~~--~~~--l~~L~~L~L~~Np~~CdC~~~~l~~~l~  316 (452)
T 3zyi_A          271 LNLAHNNLSSLPHDL--FTP--LRYLVELHLHHNPWNCDCDILWLAWWLR  316 (452)
T ss_dssp             EECCSSCCSCCCTTS--STT--CTTCCEEECCSSCEECSTTTHHHHHHHH
T ss_pred             EECCCCcCCccChHH--hcc--ccCCCEEEccCCCcCCCCCchHHHHHHH
Confidence            777665554333211  000  11567777665432  223344544444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.45  E-value=1.4e-07  Score=79.82  Aligned_cols=91  Identities=11%  Similarity=0.112  Sum_probs=71.9

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeCCC---CCCCCCccceEEeccEe-echhHHHHHHhc---CCCceEEeecccCCCcee
Q 047476          141 FDLPMHVYGHVGLESLELFSCNINAS---RFNNFIALKELSLGWIQ-LSVQSIRELLVQ---CPFLESLSLKKCWEIEYL  213 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~~~---~~~~l~~L~~L~L~~~~-~~~~~l~~lls~---cp~Le~L~l~~c~~~~~~  213 (463)
                      ..||..-...-.|++|+|++|.+...   .+.+|++|++|+|++|. +++.++..+-..   ||.|+.|+|.+|..+++-
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            45675433445899999999987643   34589999999999996 899999998863   899999999999877753


Q ss_pred             ec--ccCCCCccEEEEecCC
Q 047476          214 DI--TVPNLRLKRLVIDKCD  231 (463)
Q Consensus       214 ~i--~~~~~~L~~L~i~~c~  231 (463)
                      .+  -..+++|++|.+.+|+
T Consensus       131 Gl~~L~~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLSDLP  150 (176)
T ss_dssp             HHHHGGGCTTCCEEEEESCT
T ss_pred             HHHHHhcCCCCCEEECCCCC
Confidence            32  2357799999999987

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.45  E-value=4.5e-07  Score=90.04  Aligned_cols=64  Identities=22%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             CcCccCCCceeEEEeeeeeeCC---C--CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeeccc
Q 047476          144 PMHVYGHVGLESLELFSCNINA---S--RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKC  207 (463)
Q Consensus       144 p~~l~~~~~L~~L~L~~~~~~~---~--~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c  207 (463)
                      |..+..+++|++|+|++|.+..   .  .+..+++|++|+|++..++...-..++.+++.|+.|++.++
T Consensus        96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A           96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            3334445555555555554431   1  14445555555555554432211222445555555555554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.44  E-value=6e-07  Score=84.37  Aligned_cols=138  Identities=19%  Similarity=0.133  Sum_probs=91.2

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELL  193 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll  193 (463)
                      ..++.|++....             ...+|. +..+++|++|+|+++.+. .+.+..+++|+.|+|++..++.-  .. +
T Consensus        63 ~~L~~L~L~~n~-------------i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l  125 (308)
T 1h6u_A           63 NNLIGLELKDNQ-------------ITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-L  125 (308)
T ss_dssp             TTCCEEECCSSC-------------CCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-G
T ss_pred             CCCCEEEccCCc-------------CCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-h
Confidence            577777774321             123444 667889999999999876 45677899999999999987442  12 7


Q ss_pred             hcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEEEe
Q 047476          194 VQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELD  270 (463)
Q Consensus       194 s~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~  270 (463)
                      .+++.|+.|.+.++. +..+..-..+++|+.|.+++|........-..++|+.|.++++...  ..+..+++|+.+.+.
T Consensus       126 ~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  203 (308)
T 1h6u_A          126 AGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLK  203 (308)
T ss_dssp             TTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECT
T ss_pred             cCCCCCCEEECCCCc-cCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEcc
Confidence            899999999999986 3333323456799999999987421110113467777777665321  113445555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.43  E-value=8.8e-07  Score=88.04  Aligned_cols=146  Identities=14%  Similarity=0.059  Sum_probs=102.3

Q ss_pred             ccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476          147 VYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV  226 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~  226 (463)
                      +..+++|++|+|+++.+..-.+..+++|+.|++++..++.-.    +.+++.|+.|++.++..++.+.+. .+++|+.|.
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~~~~-~l~~L~~L~  176 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKLDVT-PQTQLTTLD  176 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCCCCT-TCTTCCEEE
T ss_pred             cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCcccccccc-cCCcCCEEE
Confidence            456788999999888776444778889999999888765422    678899999999988666665433 356899999


Q ss_pred             EecCCCCceeEEE-ECCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccc
Q 047476          227 IDKCDFNQYRYEI-AAPNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFL  304 (463)
Q Consensus       227 i~~c~~~~~~~~i-~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~  304 (463)
                      +.++.+  ..+.+ ..++|+.|.+.+.... +.+..+++|+.+.+....-..        +.  +..+++++.|.+++..
T Consensus       177 ls~n~l--~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~--------ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          177 CSFNKI--TELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTE--------ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             CCSSCC--CCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSC--------CC--CTTCTTCSEEECCSSC
T ss_pred             CCCCcc--ceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccc--------cC--ccccCCCCEEEeeCCc
Confidence            888864  22333 3678888888776432 457778888888876432211        11  4578888889888776


Q ss_pred             ccccc
Q 047476          305 LQVIP  309 (463)
Q Consensus       305 ~~~~~  309 (463)
                      +..++
T Consensus       245 l~~~~  249 (457)
T 3bz5_A          245 LTELD  249 (457)
T ss_dssp             CSCCC
T ss_pred             CCCcC
Confidence            65443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.42  E-value=5e-07  Score=93.13  Aligned_cols=193  Identities=15%  Similarity=0.077  Sum_probs=92.4

Q ss_pred             ccCCCceeEEEeeeeeeC--CC-CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCcc
Q 047476          147 VYGHVGLESLELFSCNIN--AS-RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLK  223 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~--~~-~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~  223 (463)
                      +..+++|++|+|++|.+.  ++ .+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.+ ..+++|+
T Consensus       119 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~l~~L~  195 (597)
T 3oja_B          119 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNLQLSSNR-LTHVDL-SLIPSLF  195 (597)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEEECTTSC-CSBCCG-GGCTTCS
T ss_pred             HcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEEECcCCC-CCCcCh-hhhhhhh
Confidence            345667777777777654  22 245677777777776654321 11224567777777777664 222221 1133455


Q ss_pred             EEEEecCCCC-----------------ceeEEE-ECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHH
Q 047476          224 RLVIDKCDFN-----------------QYRYEI-AAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGE  283 (463)
Q Consensus       224 ~L~i~~c~~~-----------------~~~~~i-~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~  283 (463)
                      .|.+.++.+.                 +..+.. ..++|+.|.+.++...  ..+..+++|+.+.+....-...      
T Consensus       196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~------  269 (597)
T 3oja_B          196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI------  269 (597)
T ss_dssp             EEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEE------
T ss_pred             hhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCC------
Confidence            5554444311                 111111 1234555555544221  2244556666666653221100      


Q ss_pred             HHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          284 FLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       284 ~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                       ....+..+++++.|.|+++.+..++.....     ..+|+.|.|..+.-.    .+..-+..+|+|+.|++...
T Consensus       270 -~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-----l~~L~~L~Ls~N~l~----~i~~~~~~l~~L~~L~L~~N  334 (597)
T 3oja_B          270 -MYHPFVKMQRLERLYISNNRLVALNLYGQP-----IPTLKVLDLSHNHLL----HVERNQPQFDRLENLYLDHN  334 (597)
T ss_dssp             -ESGGGTTCSSCCEEECTTSCCCEEECSSSC-----CTTCCEEECCSSCCC----CCGGGHHHHTTCSEEECCSS
T ss_pred             -CHHHhcCccCCCEEECCCCCCCCCCccccc-----CCCCcEEECCCCCCC----ccCcccccCCCCCEEECCCC
Confidence             011244567777777766555443322111     115777776543211    22222344566666666443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.42  E-value=7.2e-08  Score=96.79  Aligned_cols=77  Identities=18%  Similarity=0.156  Sum_probs=34.0

Q ss_pred             ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      +..+++|++|+|++|.+. ...+..+++|++|+|++..++.      +..+|.|+.|++.++. +..+.. ...++|+.|
T Consensus        54 ~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L~~N~-l~~~~~-~~l~~L~~L  125 (487)
T 3oja_A           54 LAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNN-ISRVSC-SRGQGKKNI  125 (487)
T ss_dssp             GTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEECCSSC-CCCEEE-CCCSSCEEE
T ss_pred             HhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEECcCCc-CCCCCc-cccCCCCEE
Confidence            334455555555555432 1124455555555555554422      1122555555555543 221111 123355555


Q ss_pred             EEecCC
Q 047476          226 VIDKCD  231 (463)
Q Consensus       226 ~i~~c~  231 (463)
                      .+.+|.
T Consensus       126 ~L~~N~  131 (487)
T 3oja_A          126 YLANNK  131 (487)
T ss_dssp             ECCSSC
T ss_pred             ECCCCC
Confidence            555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.41  E-value=7.9e-07  Score=88.33  Aligned_cols=216  Identities=18%  Similarity=0.068  Sum_probs=141.4

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRE  191 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~  191 (463)
                      .+++.|++.....            ....|..+..+++|++|+|+++.+.   +..+.++++|++|+|++..++.-. ..
T Consensus        75 ~~l~~L~L~~n~i------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~  141 (452)
T 3zyi_A           75 SNTRYLNLMENNI------------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SG  141 (452)
T ss_dssp             TTCSEEECCSSCC------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TT
T ss_pred             CCccEEECcCCcC------------ceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hh
Confidence            4677787743211            1123455667899999999998764   456788999999999998764211 22


Q ss_pred             HHhcCCCceEEeecccCCCceee--cccCCCCccEEEEecCCCCceeEEE----ECCCceEEEEecccce--eeeecCCC
Q 047476          192 LLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLVIDKCDFNQYRYEI----AAPNLRFWKYSGTEGM--FRVERQNF  263 (463)
Q Consensus       192 lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~i~~c~~~~~~~~i----~aP~L~~l~~~g~~~~--~~~~~~~~  263 (463)
                      .+.+++.|+.|++.++. +..+.  .-..+++|+.|.+.+|. ....+..    ..++|+.|.++++...  -.+..+++
T Consensus       142 ~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  219 (452)
T 3zyi_A          142 AFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVG  219 (452)
T ss_dssp             TSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTT
T ss_pred             hhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCccccccccccccc
Confidence            35689999999999986 44432  23356799999999876 3444432    3588999999886433  23556778


Q ss_pred             ccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHh
Q 047476          264 LTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFM  343 (463)
Q Consensus       264 L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  343 (463)
                      |+.+.+....-...       ....+..+++++.|.+.+..+..+....  +.  ...+|++|+|..+.-. .  .....
T Consensus       220 L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~--~l~~L~~L~L~~N~l~-~--~~~~~  285 (452)
T 3zyi_A          220 LEELEMSGNHFPEI-------RPGSFHGLSSLKKLWVMNSQVSLIERNA--FD--GLASLVELNLAHNNLS-S--LPHDL  285 (452)
T ss_dssp             CCEEECTTSCCSEE-------CGGGGTTCTTCCEEECTTSCCCEECTTT--TT--TCTTCCEEECCSSCCS-C--CCTTS
T ss_pred             ccEEECcCCcCccc-------CcccccCccCCCEEEeCCCcCceECHHH--hc--CCCCCCEEECCCCcCC-c--cChHH
Confidence            99888864321111       0123677899999999877665443211  11  1127899998754211 1  11234


Q ss_pred             hhcCCCcceEEEEcCC
Q 047476          344 LKSCPSLQTLTINIGP  359 (463)
Q Consensus       344 L~~~P~L~~L~l~~~~  359 (463)
                      +..+++|+.|+|...+
T Consensus       286 ~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          286 FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             STTCTTCCEEECCSSC
T ss_pred             hccccCCCEEEccCCC
Confidence            6788999999997654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.39  E-value=6.2e-08  Score=91.39  Aligned_cols=199  Identities=14%  Similarity=0.018  Sum_probs=106.3

Q ss_pred             eCCcCccCCCceeEEEeee-eeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee-ecc
Q 047476          142 DLPMHVYGHVGLESLELFS-CNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL-DIT  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~-~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~-~i~  216 (463)
                      .+|..+..+++|++|+|++ +.+.   +..+..+++|++|+|++..++. .+...+.+++.|+.|++.++.-.+.+ ..-
T Consensus        67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~  145 (313)
T 1ogq_A           67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPSI  145 (313)
T ss_dssp             ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCEEECCSSEEESCCCGGG
T ss_pred             ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCEEeCCCCccCCcCChHH
Confidence            5666666777777777774 4332   3455677777777777765531 11223566777777777776422111 112


Q ss_pred             cCCCCccEEEEecCCCCceeEE--E-ECC-CceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHH
Q 047476          217 VPNLRLKRLVIDKCDFNQYRYE--I-AAP-NLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYEL  288 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~~~~~~~~--i-~aP-~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l  288 (463)
                      ..+++|+.|.+.++.+. ..+.  + ..+ +|+.|.+++....    ..+..++ |+.+.+....-..       .....
T Consensus       146 ~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~-------~~~~~  216 (313)
T 1ogq_A          146 SSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEG-------DASVL  216 (313)
T ss_dssp             GGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEE-------CCGGG
T ss_pred             hcCCCCCeEECcCCccc-CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccC-------cCCHH
Confidence            23557777777776631 0110  1 122 6777777665322    1223333 6666654221000       01123


Q ss_pred             hhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          289 LRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       289 l~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      +..+++++.|.+++..+......   .  ....+|++|++..+.-.   ..+...+..+|+|+.|++...
T Consensus       217 ~~~l~~L~~L~L~~N~l~~~~~~---~--~~l~~L~~L~Ls~N~l~---~~~p~~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          217 FGSDKNTQKIHLAKNSLAFDLGK---V--GLSKNLNGLDLRNNRIY---GTLPQGLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             CCTTSCCSEEECCSSEECCBGGG---C--CCCTTCCEEECCSSCCE---ECCCGGGGGCTTCCEEECCSS
T ss_pred             HhcCCCCCEEECCCCceeeecCc---c--cccCCCCEEECcCCccc---CcCChHHhcCcCCCEEECcCC
Confidence            45678888888876655422111   0  11126888887654321   123344677888888888544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.39  E-value=2.7e-07  Score=85.59  Aligned_cols=191  Identities=18%  Similarity=0.100  Sum_probs=112.3

Q ss_pred             CceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEE
Q 047476          151 VGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRL  225 (463)
Q Consensus       151 ~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L  225 (463)
                      ++|++|+|.++.+.   +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++..+..+.  .-..+++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            47888888877654   345677888888888876553211 1235678888888888876444432  22345688888


Q ss_pred             EEecCCCCceeEE----EECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceE
Q 047476          226 VIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRV  297 (463)
Q Consensus       226 ~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~  297 (463)
                      .+.++.+.  .+.    -..++|++|.+++.... +   .+..+++|+.+.+....-....       ...+..+++++.
T Consensus       111 ~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~  181 (285)
T 1ozn_A          111 HLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-------ERAFRGLHSLDR  181 (285)
T ss_dssp             ECTTSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-------TTTTTTCTTCCE
T ss_pred             ECCCCcCC--EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC-------HHHhcCccccCE
Confidence            88877631  111    12577888887765432 1   2456777887777633211000       012456788888


Q ss_pred             EEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          298 LTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       298 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      |.+++..+..+...  .+.  ...+|++|.+..+.-..   .....+..+|+|+.|++...
T Consensus       182 L~l~~n~l~~~~~~--~~~--~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          182 LLLHQNRVAHVHPH--AFR--DLGRLMTLYLFANNLSA---LPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             EECCSSCCCEECTT--TTT--TCTTCCEEECCSSCCSC---CCHHHHTTCTTCCEEECCSS
T ss_pred             EECCCCcccccCHh--Hcc--CcccccEeeCCCCcCCc---CCHHHcccCcccCEEeccCC
Confidence            88877655433110  011  11268888876542211   12245678889998888544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.38  E-value=2.5e-07  Score=95.47  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             cceeEEEEEe--eecchhhHHHHHHHHhccccc
Q 047476          390 SSLRVVNVRG--FKGTMTEARFLNYLIFFGNVL  420 (463)
Q Consensus       390 ~~Lk~V~i~~--f~g~~~e~~l~~~ll~~a~~L  420 (463)
                      .+|+.+.+.|  +.++.....|+.++-++...+
T Consensus       547 ~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~  579 (606)
T 3t6q_A          547 SQQRTINLRQNPLDCTCSNIYFLEWYKENMQKL  579 (606)
T ss_dssp             HTSSEEECTTCCEECSGGGHHHHHHHHHCGGGE
T ss_pred             CCCCEEeCCCCCccccCCcHHHHHHHHhCcccc
Confidence            5677777776  455666677777776654443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.38  E-value=9e-07  Score=83.95  Aligned_cols=155  Identities=15%  Similarity=0.061  Sum_probs=82.7

Q ss_pred             CcCccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCc--e-eecccCCC
Q 047476          144 PMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIE--Y-LDITVPNL  220 (463)
Q Consensus       144 p~~l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~--~-~~i~~~~~  220 (463)
                      |..+..+++|++|+|+++.+..-....+++|++|++++..++.- ....+.+++.|+.|++.++....  . ...-..++
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~  171 (330)
T 1xku_A           93 PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK  171 (330)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCT
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCC
Confidence            44555667777777777765421112246777777777655321 12345678888888888765211  0 11122356


Q ss_pred             CccEEEEecCCCCceeEEE-ECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccc
Q 047476          221 RLKRLVIDKCDFNQYRYEI-AAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIV  295 (463)
Q Consensus       221 ~L~~L~i~~c~~~~~~~~i-~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l  295 (463)
                      +|+.|.+.++.+.  .+.. ..++|++|.+++.... +   .+..+++|+.+.+....-....       ...+..++++
T Consensus       172 ~L~~L~l~~n~l~--~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~~L  242 (330)
T 1xku_A          172 KLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-------NGSLANTPHL  242 (330)
T ss_dssp             TCCEEECCSSCCC--SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-------TTTGGGSTTC
T ss_pred             CcCEEECCCCccc--cCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeC-------hhhccCCCCC
Confidence            7888888777632  1110 1267777777665332 1   2445566666666532211000       0123456666


Q ss_pred             eEEEEeccccccc
Q 047476          296 RVLTVCSFLLQVI  308 (463)
Q Consensus       296 ~~L~l~~~~~~~~  308 (463)
                      +.|.+++..+..+
T Consensus       243 ~~L~L~~N~l~~l  255 (330)
T 1xku_A          243 RELHLNNNKLVKV  255 (330)
T ss_dssp             CEEECCSSCCSSC
T ss_pred             CEEECCCCcCccC
Confidence            6666665554433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.36  E-value=6.6e-08  Score=102.78  Aligned_cols=198  Identities=15%  Similarity=0.105  Sum_probs=114.5

Q ss_pred             CCc--CccCCCceeEEEeeeeeeC---CCCC-CCCCccceEEeccEeechhHHH--HHHhcCCCceEEeecccCCCceee
Q 047476          143 LPM--HVYGHVGLESLELFSCNIN---ASRF-NNFIALKELSLGWIQLSVQSIR--ELLVQCPFLESLSLKKCWEIEYLD  214 (463)
Q Consensus       143 lp~--~l~~~~~L~~L~L~~~~~~---~~~~-~~l~~L~~L~L~~~~~~~~~l~--~lls~cp~Le~L~l~~c~~~~~~~  214 (463)
                      +|.  .+.++++|++|+|++|.+.   +..+ ..+++|++|+|++..++.....  ..+.+|+.|+.|++.++.-.+...
T Consensus       116 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  195 (768)
T 3rgz_A          116 VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD  195 (768)
T ss_dssp             GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB
T ss_pred             CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC
Confidence            555  5667778888888877653   2222 5678888888887766432222  236778888888888775322222


Q ss_pred             cccCCCCccEEEEecCCCCce-eEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476          215 ITVPNLRLKRLVIDKCDFNQY-RYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELL  289 (463)
Q Consensus       215 i~~~~~~L~~L~i~~c~~~~~-~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll  289 (463)
                      . ..+++|+.|.+.+|.+... ...-..++|++|.++++...    ..+..+++|+.+.+....-.....         .
T Consensus       196 ~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~---------~  265 (768)
T 3rgz_A          196 V-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP---------P  265 (768)
T ss_dssp             C-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCC---------C
T ss_pred             c-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccC---------c
Confidence            2 4466888888887764211 11113577888877765432    235567777777776432110000         0


Q ss_pred             hcCccceEEEEeccccc-cccCCCCCCCCCCC-CceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          290 RQLEIVRVLTVCSFLLQ-VIPHAEEPFGMTVP-LEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~-~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      ..+++++.|.+.+..+. .++...     ... .+|++|.+..+.-.   ..+...+..+++|++|++...
T Consensus       266 ~~l~~L~~L~L~~n~l~~~ip~~~-----~~~~~~L~~L~Ls~n~l~---~~~p~~~~~l~~L~~L~L~~n  328 (768)
T 3rgz_A          266 LPLKSLQYLSLAENKFTGEIPDFL-----SGACDTLTGLDLSGNHFY---GAVPPFFGSCSLLESLALSSN  328 (768)
T ss_dssp             CCCTTCCEEECCSSEEEESCCCCS-----CTTCTTCSEEECCSSEEE---ECCCGGGGGCTTCCEEECCSS
T ss_pred             cccCCCCEEECcCCccCCccCHHH-----HhhcCcCCEEECcCCcCC---CccchHHhcCCCccEEECCCC
Confidence            15677788877665544 222211     111 26888887653211   123445778899999998644

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.36  E-value=7.6e-07  Score=88.12  Aligned_cols=189  Identities=16%  Similarity=0.172  Sum_probs=117.2

Q ss_pred             CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCC
Q 047476          146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNL  220 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~  220 (463)
                      .+..+++|++|+|+++.+.   +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++..+..+..  -..++
T Consensus       107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~  185 (440)
T 3zyj_A          107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP-SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS  185 (440)
T ss_dssp             GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred             hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccC-HHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence            4556788999999888764   234678889999999887653211 12356789999999998876665542  23466


Q ss_pred             CccEEEEecCCCCceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476          221 RLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR  296 (463)
Q Consensus       221 ~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~  296 (463)
                      +|+.|.+.+|.+..-.-....++|+.|.++++...    ..+..+++|+.+.+....-....       ...+..+++++
T Consensus       186 ~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~  258 (440)
T 3zyj_A          186 NLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-------RNAFDNLQSLV  258 (440)
T ss_dssp             SCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-------TTSSTTCTTCC
T ss_pred             ccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-------hhhhcCCCCCC
Confidence            89999998887421111123578888888876432    23556778888877633211100       12245678889


Q ss_pred             EEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhhc
Q 047476          297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLKS  346 (463)
Q Consensus       297 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~~  346 (463)
                      .|+|+++.+..++...  +..  ..+|+.|.|..+.-  ..+..++...++.
T Consensus       259 ~L~L~~N~l~~~~~~~--~~~--l~~L~~L~L~~Np~~CdC~l~~l~~~~~~  306 (440)
T 3zyj_A          259 EINLAHNNLTLLPHDL--FTP--LHHLERIHLHHNPWNCNCDILWLSWWIKD  306 (440)
T ss_dssp             EEECTTSCCCCCCTTT--TSS--CTTCCEEECCSSCEECSSTTHHHHHHHHT
T ss_pred             EEECCCCCCCccChhH--hcc--ccCCCEEEcCCCCccCCCCchHHHHHHHh
Confidence            9998877666443221  111  12688888876542  2344566655554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.35  E-value=5.7e-07  Score=95.53  Aligned_cols=193  Identities=17%  Similarity=0.104  Sum_probs=110.7

Q ss_pred             cCCCceeEEEeeeeeeCC---CC---CCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476          148 YGHVGLESLELFSCNINA---SR---FNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL  220 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~~---~~---~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~  220 (463)
                      ..+++|++|+|+++.+..   ..   +..+++|++|+|++..+.. ..+    ..|+.|+.|++.+|.-.+.+..-..++
T Consensus       148 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~l~~L~~L~Ls~n~l~~~~~~l~~l~  223 (768)
T 3rgz_A          148 LKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV----SRCVNLEFLDVSSNNFSTGIPFLGDCS  223 (768)
T ss_dssp             CCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC----TTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred             ccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc----ccCCcCCEEECcCCcCCCCCcccccCC
Confidence            466788888888876641   12   5678888888888877642 221    678888888888876433333334566


Q ss_pred             CccEEEEecCCCCc--eeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476          221 RLKRLVIDKCDFNQ--YRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR  296 (463)
Q Consensus       221 ~L~~L~i~~c~~~~--~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~  296 (463)
                      +|+.|.+.+|.+..  ....-..++|++|.++++...  +....+++|+.+.+....-.      +.....+...+++++
T Consensus       224 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~------~~ip~~~~~~~~~L~  297 (768)
T 3rgz_A          224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFT------GEIPDFLSGACDTLT  297 (768)
T ss_dssp             SCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEE------ESCCCCSCTTCTTCS
T ss_pred             CCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccC------CccCHHHHhhcCcCC
Confidence            88888888876421  111113678888888776432  22225677888877532110      000001122357888


Q ss_pred             EEEEecccccc-ccCCCCCCCCCCCCceeEEEEecCCCCchhhHH-HHhhhcCCCcceEEEEcC
Q 047476          297 VLTVCSFLLQV-IPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGI-NFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       297 ~L~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~lL~~~P~L~~L~l~~~  358 (463)
                      .|.+++..+.. ++..   +.  ...+|++|.+..+.-..   .+ ...+..+++|+.|++...
T Consensus       298 ~L~Ls~n~l~~~~p~~---~~--~l~~L~~L~L~~n~l~~---~ip~~~l~~l~~L~~L~Ls~n  353 (768)
T 3rgz_A          298 GLDLSGNHFYGAVPPF---FG--SCSLLESLALSSNNFSG---ELPMDTLLKMRGLKVLDLSFN  353 (768)
T ss_dssp             EEECCSSEEEECCCGG---GG--GCTTCCEEECCSSEEEE---ECCHHHHTTCTTCCEEECCSS
T ss_pred             EEECcCCcCCCccchH---Hh--cCCCccEEECCCCcccC---cCCHHHHhcCCCCCEEeCcCC
Confidence            88887665442 2211   00  11167777775432110   11 123667888888888544

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.34  E-value=1.1e-06  Score=87.75  Aligned_cols=197  Identities=18%  Similarity=0.156  Sum_probs=92.7

Q ss_pred             CccCCCceeEEEeeeeee---CCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476          146 HVYGHVGLESLELFSCNI---NASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL  220 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~  220 (463)
                      .+..+++|++|+|.++.+   .+..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++.. ..+.  .-..++
T Consensus       123 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~  200 (477)
T 2id5_A          123 MFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNI-NAIRDYSFKRLY  200 (477)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCC-CEECTTCSCSCT
T ss_pred             HccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcC-cEeChhhcccCc
Confidence            344555666666665543   2334556666666666665543211 23345666666666666542 2211  112344


Q ss_pred             CccEEEEecCCCCceeEE---EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCc
Q 047476          221 RLKRLVIDKCDFNQYRYE---IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLE  293 (463)
Q Consensus       221 ~L~~L~i~~c~~~~~~~~---i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~  293 (463)
                      +|+.|.+.+|.. ...+.   ...++|++|.++++...    ..+..+++|+.+.+....-....       ...+..++
T Consensus       201 ~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~~~~~~l~  272 (477)
T 2id5_A          201 RLKVLEISHWPY-LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE-------GSMLHELL  272 (477)
T ss_dssp             TCCEEEEECCTT-CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC-------TTSCTTCT
T ss_pred             ccceeeCCCCcc-ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC-------hhhccccc
Confidence            666666666552 11111   11235666666654321    12345566666666532111000       01234556


Q ss_pred             cceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          294 IVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       294 ~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      +++.|.+.+..+..+...  .+.  ...+|+.|+|..+.-. .  .....+..+|+|++|++...+
T Consensus       273 ~L~~L~L~~n~l~~~~~~--~~~--~l~~L~~L~L~~N~l~-~--~~~~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          273 RLQEIQLVGGQLAVVEPY--AFR--GLNYLRVLNVSGNQLT-T--LEESVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             TCCEEECCSSCCSEECTT--TBT--TCTTCCEEECCSSCCS-C--CCGGGBSCGGGCCEEECCSSC
T ss_pred             cCCEEECCCCccceECHH--Hhc--CcccCCEEECCCCcCc-e--eCHhHcCCCcccCEEEccCCC
Confidence            666666655444332111  000  1115777776543211 0  112245667778877775443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.34  E-value=7e-07  Score=92.69  Aligned_cols=204  Identities=5%  Similarity=-0.022  Sum_probs=126.8

Q ss_pred             CCcCcc--CCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-echhHHHHHH------hcCCCceEEeecccCCC
Q 047476          143 LPMHVY--GHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSVQSIRELL------VQCPFLESLSLKKCWEI  210 (463)
Q Consensus       143 lp~~l~--~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~l~~ll------s~cp~Le~L~l~~c~~~  210 (463)
                      +|..+.  ++++|++|+|++|.+.   |..+..+++|++|+|++.. ++...+..-+      ..|+.|+.|++.++.- 
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l-  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL-  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC-
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC-
Confidence            888888  8999999999999753   5567889999999999997 7652333333      3569999999999863 


Q ss_pred             ceee---cccCCCCccEEEEecCCCCceeE-E-EECCCceEEEEecccce---eeeecCCC-ccEEEEeeecCCCCchhH
Q 047476          211 EYLD---ITVPNLRLKRLVIDKCDFNQYRY-E-IAAPNLRFWKYSGTEGM---FRVERQNF-LTEVELDFALQPDFDEEI  281 (463)
Q Consensus       211 ~~~~---i~~~~~~L~~L~i~~c~~~~~~~-~-i~aP~L~~l~~~g~~~~---~~~~~~~~-L~~l~l~~~~~~~~~~~~  281 (463)
                      ..+.   .-..+++|+.|.+.++.+. ..+ . -..++|+.|.++++...   ..+..+++ |+.+.+....-...    
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~-g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~l----  392 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLE-GKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYI----  392 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCE-EECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSC----
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCc-cchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCccc----
Confidence            3332   2345679999999998742 022 1 23578888888876433   13556777 88888864321110    


Q ss_pred             HHHHHHHhhc--CccceEEEEeccccccc-cCCCC--CCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          282 GEFLYELLRQ--LEIVRVLTVCSFLLQVI-PHAEE--PFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       282 ~~~~~~ll~~--l~~l~~L~l~~~~~~~~-~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                          ...+..  +++++.|.++...+... +..-.  ....+...+|++|.+..+.-. .  --..+++.+|+|+.|++.
T Consensus       393 ----p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~--lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          393 ----PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-K--FPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             ----CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-S--CCTHHHHTTCCCSEEECC
T ss_pred             ----chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-c--CCHHHHccCCCCCEEECC
Confidence                011122  34788888876655422 11100  111112236788877654321 1  112345567888888876


Q ss_pred             cCC
Q 047476          357 IGP  359 (463)
Q Consensus       357 ~~~  359 (463)
                      ...
T Consensus       466 ~N~  468 (636)
T 4eco_A          466 GNM  468 (636)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.33  E-value=1.7e-07  Score=88.51  Aligned_cols=228  Identities=13%  Similarity=0.074  Sum_probs=113.1

Q ss_pred             CceeEEEeeeeeeCC---CCCCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476          151 VGLESLELFSCNINA---SRFNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV  226 (463)
Q Consensus       151 ~~L~~L~L~~~~~~~---~~~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~  226 (463)
                      ++|++|+|+++.+..   ..+..+++|++|+|++..++. ..    +..++.|+.|++.++. +..+.   ..++|+.|.
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~l~~L~~L~Ls~n~-l~~l~---~~~~L~~L~  105 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQELL---VGPSIETLH  105 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE----ETTCTTCCEEECCSSE-EEEEE---ECTTCCEEE
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh----hhhcCCCCEEECcCCc-ccccc---CCCCcCEEE
Confidence            355555555554431   123455555666555554321 11    4455666666665553 22222   113566666


Q ss_pred             EecCCCCceeEEE-ECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476          227 IDKCDFNQYRYEI-AAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC  301 (463)
Q Consensus       227 i~~c~~~~~~~~i-~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~  301 (463)
                      +.++.+  ..+.. ..++|++|.+++....    ..+..+++|+.+.+....-...      ....+...+++++.|.++
T Consensus       106 l~~n~l--~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~~~~~~~l~~L~~L~L~  177 (317)
T 3o53_A          106 AANNNI--SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV------NFAELAASSDTLEHLNLQ  177 (317)
T ss_dssp             CCSSCC--SEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE------EGGGGGGGTTTCCEEECT
T ss_pred             CCCCcc--CCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc------cHHHHhhccCcCCEEECC
Confidence            665542  22211 2455666666554321    2344566666666653221100      011234567888999988


Q ss_pred             ccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCCCCchhhhccc
Q 047476          302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFELDPEKCWTKN  381 (463)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~~~~~~~w~~~  381 (463)
                      +..+..++...      ...+|++|.+..+.-    ..+..-+..+|+|+.|++....-..         .        +
T Consensus       178 ~N~l~~~~~~~------~l~~L~~L~Ls~N~l----~~l~~~~~~l~~L~~L~L~~N~l~~---------l--------~  230 (317)
T 3o53_A          178 YNFIYDVKGQV------VFAKLKTLDLSSNKL----AFMGPEFQSAAGVTWISLRNNKLVL---------I--------E  230 (317)
T ss_dssp             TSCCCEEECCC------CCTTCCEEECCSSCC----CEECGGGGGGTTCSEEECTTSCCCE---------E--------C
T ss_pred             CCcCccccccc------ccccCCEEECCCCcC----CcchhhhcccCcccEEECcCCcccc---------h--------h
Confidence            77665443211      112788888865432    2222236678999999985442210         0        0


Q ss_pred             cccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeee
Q 047476          382 IVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLY  426 (463)
Q Consensus       382 ~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~  426 (463)
                      ..+  ....+|+.+.+.+-.-...   .+...+.+-+.|+.+.+.
T Consensus       231 ~~~--~~l~~L~~L~l~~N~~~~~---~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          231 KAL--RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TTC--CCCTTCCEEECTTCCCBHH---HHHHHHHTCHHHHHHHHH
T ss_pred             hHh--hcCCCCCEEEccCCCccCc---CHHHHHhccccceEEECC
Confidence            000  1236788887775433311   233344555666666554

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.32  E-value=1.3e-06  Score=76.20  Aligned_cols=86  Identities=16%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCc
Q 047476          146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRL  222 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L  222 (463)
                      .+..+++|++|+|+++.+.   +..+..+++|+.|+|++..+++... ..+..++.|+.|++.+|..++.+..-..+++|
T Consensus        83 ~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L  161 (197)
T 4ezg_A           83 PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPEL  161 (197)
T ss_dssp             GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSC
T ss_pred             hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCccccHhhcCCCCC
Confidence            4556677888888877664   4566678888888888877655433 33567788888888887644544433445677


Q ss_pred             cEEEEecCCC
Q 047476          223 KRLVIDKCDF  232 (463)
Q Consensus       223 ~~L~i~~c~~  232 (463)
                      +.|.+.+|.+
T Consensus       162 ~~L~l~~n~i  171 (197)
T 4ezg_A          162 KSLNIQFDGV  171 (197)
T ss_dssp             CEEECTTBCC
T ss_pred             CEEECCCCCC
Confidence            7777777763

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.32  E-value=1.9e-06  Score=83.71  Aligned_cols=233  Identities=18%  Similarity=0.120  Sum_probs=133.3

Q ss_pred             CccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCc-CccCCCceeEEEeeeeeeC---
Q 047476           89 IVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPM-HVYGHVGLESLELFSCNIN---  164 (463)
Q Consensus        89 ~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~---  164 (463)
                      .++.+.+......... ...+..  -+.++.|++.-..             ...+|. .+..+++|++|+|+++.+.   
T Consensus        46 ~l~~l~l~~~~l~~l~-~~~~~~--l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  109 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLP-AALLDS--FRQVELLNLNDLQ-------------IEEIDTYAFAYAHTIQKLYMGFNAIRYLP  109 (390)
T ss_dssp             CCSEEEEESCEESEEC-THHHHH--CCCCSEEECTTSC-------------CCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CceEEEecCCchhhCC-hhHhcc--cccCcEEECCCCc-------------ccccChhhccCCCCcCEEECCCCCCCcCC
Confidence            5677776543222111 111111  3678888874211             123333 5567889999999999764   


Q ss_pred             CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEEEEecCCCCceeEEE-EC
Q 047476          165 ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLVIDKCDFNQYRYEI-AA  241 (463)
Q Consensus       165 ~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~i~~c~~~~~~~~i-~a  241 (463)
                      +..+..+++|++|+|++..++.- -..++.+++.|+.|++.++. +..+.  .-..+++|+.|.+.++.+.  .+.+ ..
T Consensus       110 ~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l  185 (390)
T 3o6n_A          110 PHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT--HVDLSLI  185 (390)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCS--BCCGGGC
T ss_pred             HHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCC--ccccccc
Confidence            34567899999999999876521 12335789999999999986 33322  1234679999999988742  2211 13


Q ss_pred             CCceEEEEeccc-------------------ce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476          242 PNLRFWKYSGTE-------------------GM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC  301 (463)
Q Consensus       242 P~L~~l~~~g~~-------------------~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~  301 (463)
                      |+|+.+.+.+..                   .. +.....++|+.+.+....-...         ..+..+++++.|+++
T Consensus       186 ~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~---------~~l~~l~~L~~L~Ls  256 (390)
T 3o6n_A          186 PSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT---------AWLLNYPGLVEVDLS  256 (390)
T ss_dssp             TTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCC---------GGGGGCTTCSEEECC
T ss_pred             cccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCccc---------HHHcCCCCccEEECC
Confidence            555555544432                   11 1112234566655553221110         235677888888887


Q ss_pred             ccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      +..+..+...  .+  ....+|++|.+..+.    +..+......+|+|+.|++...
T Consensus       257 ~n~l~~~~~~--~~--~~l~~L~~L~L~~n~----l~~~~~~~~~l~~L~~L~L~~n  305 (390)
T 3o6n_A          257 YNELEKIMYH--PF--VKMQRLERLYISNNR----LVALNLYGQPIPTLKVLDLSHN  305 (390)
T ss_dssp             SSCCCEEESG--GG--TTCSSCCEEECCSSC----CCEEECSSSCCTTCCEEECCSS
T ss_pred             CCcCCCcChh--Hc--cccccCCEEECCCCc----CcccCcccCCCCCCCEEECCCC
Confidence            7655433111  00  011268888876532    1222333467888888888654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.31  E-value=2.9e-07  Score=95.07  Aligned_cols=199  Identities=19%  Similarity=0.162  Sum_probs=103.5

Q ss_pred             ccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCc
Q 047476          147 VYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRL  222 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L  222 (463)
                      +..+++|++|+|+++.+.  |..+..+++|++|++++..+..-. ...+.++|.|+.|.+.++.....+.  .-..+++|
T Consensus       274 ~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L  352 (606)
T 3t6q_A          274 FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLENLENL  352 (606)
T ss_dssp             TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred             hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCCcccccchhhhhccCcC
Confidence            445677888888877664  345667788888888877654211 1235677888888888775332221  12345678


Q ss_pred             cEEEEecCCCCceeEE------EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcC
Q 047476          223 KRLVIDKCDFNQYRYE------IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQL  292 (463)
Q Consensus       223 ~~L~i~~c~~~~~~~~------i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l  292 (463)
                      +.|.+.++..  ..+.      -..|+|++|.++++...    ..+..+++|+.+.+....-...      .....+..+
T Consensus       353 ~~L~l~~n~l--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~l  424 (606)
T 3t6q_A          353 RELDLSHDDI--ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK------DAQSPFQNL  424 (606)
T ss_dssp             CEEECCSSCC--CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECC------TTCCTTTTC
T ss_pred             CEEECCCCcc--ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCc------ccchhhhCc
Confidence            8888777763  2222      12467777777765432    1344566777776653211000      000123456


Q ss_pred             ccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          293 EIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       293 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      ++++.|.+++..+......  .+.  ...+|++|.+..+.-..........+..+++|+.|++...
T Consensus       425 ~~L~~L~l~~n~l~~~~~~--~~~--~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          425 HLLKVLNLSHSLLDISSEQ--LFD--GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             TTCCEEECTTCCCBTTCTT--TTT--TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             ccCCEEECCCCccCCcCHH--HHh--CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence            6777777765544322110  000  0115666666443211000011123555666666666443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.31  E-value=4.2e-07  Score=89.95  Aligned_cols=196  Identities=18%  Similarity=0.103  Sum_probs=95.7

Q ss_pred             ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCC
Q 047476          147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLR  221 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~  221 (463)
                      +..+++|++|+|+++.+.   +..+.++++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+.  .-..+++
T Consensus        84 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~  161 (440)
T 3zyj_A           84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPS  161 (440)
T ss_dssp             TSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTT
T ss_pred             hhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCc-ccccCHHHhhhCcc
Confidence            444556666666655442   234455666666666655442100 1123455666666666554 22221  1123446


Q ss_pred             ccEEEEecCCCCceeEEE----ECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccc
Q 047476          222 LKRLVIDKCDFNQYRYEI----AAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIV  295 (463)
Q Consensus       222 L~~L~i~~c~~~~~~~~i----~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l  295 (463)
                      |+.|.+.+|. ....+..    ..++|++|.++++...  -.+..+++|+.+.+....-...       ....+..++++
T Consensus       162 L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L  233 (440)
T 3zyj_A          162 LRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI-------RPGSFQGLMHL  233 (440)
T ss_dssp             CCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE-------CTTTTTTCTTC
T ss_pred             cCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc-------ChhhhccCccC
Confidence            6666666544 2222211    1456666666654322  1234455666666543211000       01224566777


Q ss_pred             eEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          296 RVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       296 ~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      +.|.+.+..+..+....  +.  ...+|++|+|..+.-.   ......+..+++|+.|+|...+
T Consensus       234 ~~L~L~~n~l~~~~~~~--~~--~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          234 QKLWMIQSQIQVIERNA--FD--NLQSLVEINLAHNNLT---LLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CEEECTTCCCCEECTTS--ST--TCTTCCEEECTTSCCC---CCCTTTTSSCTTCCEEECCSSC
T ss_pred             CEEECCCCceeEEChhh--hc--CCCCCCEEECCCCCCC---ccChhHhccccCCCEEEcCCCC
Confidence            77777665554332211  01  1126888887654211   0112346678899999886654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.31  E-value=9e-07  Score=88.52  Aligned_cols=197  Identities=16%  Similarity=0.117  Sum_probs=89.1

Q ss_pred             CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccC
Q 047476          144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVP  218 (463)
Q Consensus       144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~  218 (463)
                      |..+..+++|++|+|+++.+.   +..+..+++|++|+|++..+..- ....+.+++.|+.|++.++. +..+.  .-..
T Consensus        73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~  150 (477)
T 2id5_A           73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSLEVGDND-LVYISHRAFSG  150 (477)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEECCTT-CCEECTTSSTT
T ss_pred             hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEEECCCCc-cceeChhhccC
Confidence            334445566666666665443   12344566666666665543211 01123556666666666554 22221  1123


Q ss_pred             CCCccEEEEecCCCCceeEE----EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhh
Q 047476          219 NLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLR  290 (463)
Q Consensus       219 ~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~  290 (463)
                      +++|+.|.+.+|.+  ..+.    -..++|+.|.+.+....    ..+..+++|+.+.+........-.       .-..
T Consensus       151 l~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~~~~  221 (477)
T 2id5_A          151 LNSLEQLTLEKCNL--TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT-------PNCL  221 (477)
T ss_dssp             CTTCCEEEEESCCC--SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEEC-------TTTT
T ss_pred             CCCCCEEECCCCcC--cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccC-------cccc
Confidence            44666666666642  1111    12456666666554322    134455566666665321110000       0011


Q ss_pred             cCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          291 QLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       291 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      ...+++.|.+++..+..++...  +  ....+|+.|+|..+.-. .  .....+..+++|+.|++...
T Consensus       222 ~~~~L~~L~l~~n~l~~~~~~~--~--~~l~~L~~L~Ls~n~l~-~--~~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          222 YGLNLTSLSITHCNLTAVPYLA--V--RHLVYLRFLNLSYNPIS-T--IEGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             TTCCCSEEEEESSCCCSCCHHH--H--TTCTTCCEEECCSSCCC-E--ECTTSCTTCTTCCEEECCSS
T ss_pred             cCccccEEECcCCcccccCHHH--h--cCccccCeeECCCCcCC-c--cChhhccccccCCEEECCCC
Confidence            1235666666655444332100  0  00115667766543211 0  11123566777777777544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.30  E-value=2e-06  Score=82.39  Aligned_cols=125  Identities=18%  Similarity=0.093  Sum_probs=71.0

Q ss_pred             cCccCCCceeEEEeeeeeeCC--C-CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCC
Q 047476          145 MHVYGHVGLESLELFSCNINA--S-RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPN  219 (463)
Q Consensus       145 ~~l~~~~~L~~L~L~~~~~~~--~-~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~  219 (463)
                      ..+..+++|++|+|+++.+..  + .+..+++|++|+|++..++.-.....+.+++.|+.|++.++..++.+.  .-..+
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            345567788888888776642  1 255678888888887765421111245677888888888775444432  12335


Q ss_pred             CCccEEEEecCCCCceeEE----EECCCceEEEEecccce----eeeecCCCccEEEEee
Q 047476          220 LRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDF  271 (463)
Q Consensus       220 ~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~  271 (463)
                      ++|+.|.+.++..  ..+.    -..++|++|.+++....    ..+..+++|+.+.+..
T Consensus       174 ~~L~~L~l~~n~l--~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  231 (353)
T 2z80_A          174 TFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD  231 (353)
T ss_dssp             CEEEEEEEEETTC--CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred             CCCCEEECCCCCc--CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence            5777888777753  1110    01356666666554321    1122355566666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.29  E-value=4.1e-07  Score=79.41  Aligned_cols=102  Identities=12%  Similarity=0.079  Sum_probs=69.2

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELL  193 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~ll  193 (463)
                      ..++.+++.-..             ...+| .+..+++|++|.+++|.+. .+.+..+++|++|++++..++..... .+
T Consensus        44 ~~L~~L~l~~n~-------------i~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~l  108 (197)
T 4ezg_A           44 NSLTYITLANIN-------------VTDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIP-NL  108 (197)
T ss_dssp             HTCCEEEEESSC-------------CSCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSC-CC
T ss_pred             CCccEEeccCCC-------------ccChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccCh-hh
Confidence            467777775321             12455 4667789999999988765 34667789999999998776543322 25


Q ss_pred             hcCCCceEEeecccCCCc-eeecccCCCCccEEEEecCC
Q 047476          194 VQCPFLESLSLKKCWEIE-YLDITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       194 s~cp~Le~L~l~~c~~~~-~~~i~~~~~~L~~L~i~~c~  231 (463)
                      .++|.|+.|++.++.-.. ....-..+++|+.|.+++|.
T Consensus       109 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~  147 (197)
T 4ezg_A          109 SGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG  147 (197)
T ss_dssp             TTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred             cCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence            678999999999886322 12222346688888888886

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.29  E-value=8.1e-07  Score=81.94  Aligned_cols=203  Identities=16%  Similarity=0.148  Sum_probs=118.3

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--c
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--I  215 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i  215 (463)
                      ..+|..+.  ++|++|+|+++.+.   +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+.  .
T Consensus        20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~   95 (276)
T 2z62_A           20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGA   95 (276)
T ss_dssp             SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTT
T ss_pred             cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCc-cCccChhh
Confidence            34565443  47888888887654   336677888888888887653211 1234678888888888876 33332  2


Q ss_pred             ccCCCCccEEEEecCCCC-ceeEEE-ECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHHH
Q 047476          216 TVPNLRLKRLVIDKCDFN-QYRYEI-AAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYEL  288 (463)
Q Consensus       216 ~~~~~~L~~L~i~~c~~~-~~~~~i-~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l  288 (463)
                      -..+++|+.|.+.++... .....+ ..++|++|.+++....     ..+..+++|+.+.+....-....   ...+ .-
T Consensus        96 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~-~~  171 (276)
T 2z62_A           96 FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY---CTDL-RV  171 (276)
T ss_dssp             TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC---GGGG-HH
T ss_pred             hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC---HHHh-hh
Confidence            234568888888877641 111112 3578888888775432     23566788888887643211110   0011 11


Q ss_pred             hhcCccce-EEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          289 LRQLEIVR-VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       289 l~~l~~l~-~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      +..++.+. .|.+++..+..++..     .+...+|++|.+..+.-. .  .....+..+|+|+.|++...+
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~~-----~~~~~~L~~L~L~~n~l~-~--~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQPG-----AFKEIRLKELALDTNQLK-S--VPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECTT-----SSCSCCEEEEECCSSCCS-C--CCTTTTTTCCSCCEEECCSSC
T ss_pred             hhhccccceeeecCCCcccccCcc-----ccCCCcccEEECCCCcee-e--cCHhHhcccccccEEEccCCc
Confidence            33344443 677776655544322     122237899988754321 1  112456789999999986543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.28  E-value=9e-07  Score=82.40  Aligned_cols=81  Identities=20%  Similarity=0.103  Sum_probs=46.9

Q ss_pred             ccCCCceeEEEeeeeeeCC-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNINA-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      +..+++|++|+|+++.+.. +.+..+++|+.|+|++..++.  +.. +..++.|+.|++.++. +..+..-..+++|+.|
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L  139 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSLEHNG-ISDINGLVHLPQLESL  139 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEE
T ss_pred             HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEECCCCc-CCCChhhcCCCCCCEE
Confidence            4456677777777766542 225567777777777665533  111 5667777777777664 3333222334566666


Q ss_pred             EEecCC
Q 047476          226 VIDKCD  231 (463)
Q Consensus       226 ~i~~c~  231 (463)
                      .+++|.
T Consensus       140 ~l~~n~  145 (291)
T 1h6t_A          140 YLGNNK  145 (291)
T ss_dssp             ECCSSC
T ss_pred             EccCCc
Confidence            666665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.27  E-value=7.3e-07  Score=95.10  Aligned_cols=202  Identities=8%  Similarity=-0.009  Sum_probs=126.4

Q ss_pred             CCcCcc--CCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-ech----hHHHHHH---hcCCCceEEeecccCC
Q 047476          143 LPMHVY--GHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSV----QSIRELL---VQCPFLESLSLKKCWE  209 (463)
Q Consensus       143 lp~~l~--~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~----~~l~~ll---s~cp~Le~L~l~~c~~  209 (463)
                      +|..+.  ++++|++|+|++|.+.   |..+..+++|+.|+|++.. ++.    ..+..+-   ..+|.|+.|.+.++.-
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            888877  8999999999998653   4567789999999999987 655    2333332   4677999999999873


Q ss_pred             Cceeec---ccCCCCccEEEEecCCCCceeE-EE-ECCCceEEEEecccce---eeeecCCC-ccEEEEeeecCCCCchh
Q 047476          210 IEYLDI---TVPNLRLKRLVIDKCDFNQYRY-EI-AAPNLRFWKYSGTEGM---FRVERQNF-LTEVELDFALQPDFDEE  280 (463)
Q Consensus       210 ~~~~~i---~~~~~~L~~L~i~~c~~~~~~~-~i-~aP~L~~l~~~g~~~~---~~~~~~~~-L~~l~l~~~~~~~~~~~  280 (463)
                      . .+.-   -..+++|+.|.++++.+.  .+ .+ ..++|+.|.++++...   ..+..+++ |+.+.+....-...   
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~l---  634 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYI---  634 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSC---
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcC---
Confidence            3 3322   345679999999998743  22 22 3578899998876433   12556777 88888874321110   


Q ss_pred             HHHHHHHHhhcC--ccceEEEEeccccccc-cCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476          281 IGEFLYELLRQL--EIVRVLTVCSFLLQVI-PHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       281 ~~~~~~~ll~~l--~~l~~L~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                           ...+..+  ++++.|.++.+.+... +........+...+|+.|.+..+.-. .  --..++..+|+|+.|++..
T Consensus       635 -----p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~--lp~~~~~~l~~L~~L~Ls~  706 (876)
T 4ecn_A          635 -----PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-K--FPTELFATGSPISTIILSN  706 (876)
T ss_dssp             -----CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-S--CCHHHHHTTCCCSEEECCS
T ss_pred             -----chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-c--cCHHHHccCCCCCEEECCC
Confidence                 0112223  3488888876655322 11111111222236788887654321 1  1123455778888888865


Q ss_pred             C
Q 047476          358 G  358 (463)
Q Consensus       358 ~  358 (463)
                      .
T Consensus       707 N  707 (876)
T 4ecn_A          707 N  707 (876)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.27  E-value=6.3e-07  Score=92.05  Aligned_cols=82  Identities=21%  Similarity=0.084  Sum_probs=50.1

Q ss_pred             CccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccE
Q 047476          146 HVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKR  224 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~  224 (463)
                      .+..+++|+.|+|++|.+. .+.+..+++|+.|+|++..+..-.   -+..++.|+.|+|.+|. +..+.-...+++|+.
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~---~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~  135 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS---SLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES  135 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCT---TSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSE
T ss_pred             HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCCh---hhccCCCCCEEEecCCC-CCCCccccCCCccCE
Confidence            3556677777777777654 223566777777777776653311   25567777777777765 333332333557777


Q ss_pred             EEEecCC
Q 047476          225 LVIDKCD  231 (463)
Q Consensus       225 L~i~~c~  231 (463)
                      |.+++|.
T Consensus       136 L~Ls~N~  142 (605)
T 1m9s_A          136 LYLGNNK  142 (605)
T ss_dssp             EECCSSC
T ss_pred             EECCCCc
Confidence            7777665

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.27  E-value=7.2e-07  Score=91.81  Aligned_cols=58  Identities=17%  Similarity=0.144  Sum_probs=34.6

Q ss_pred             hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      ..+++++.|.++++.+..++.        ...+|++|.|..+.    +..+..-+..+|+|+.|+|....
T Consensus       238 ~~l~~L~~L~Ls~N~L~~lp~--------~~~~L~~L~Ls~N~----L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          238 VLPSELKELMVSGNRLTSLPM--------LPSGLLSLSVYRNQ----LTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             CCCTTCCEEECCSSCCSCCCC--------CCTTCCEEECCSSC----CCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CCCCcCcEEECCCCCCCcCCc--------ccccCcEEeCCCCC----CCcCCHHHhhccccCEEEecCCC
Confidence            345566666666554443332        11268888876542    22344457788999999986654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.25  E-value=2.9e-07  Score=88.65  Aligned_cols=204  Identities=18%  Similarity=0.175  Sum_probs=100.1

Q ss_pred             ceeEEEeeeeeeCCC-------CCCCCC-ccceEEeccEeech---hHHHHHHhcC-CCceEEeecccCCCceeec----
Q 047476          152 GLESLELFSCNINAS-------RFNNFI-ALKELSLGWIQLSV---QSIRELLVQC-PFLESLSLKKCWEIEYLDI----  215 (463)
Q Consensus       152 ~L~~L~L~~~~~~~~-------~~~~l~-~L~~L~L~~~~~~~---~~l~~lls~c-p~Le~L~l~~c~~~~~~~i----  215 (463)
                      +|++|+|++|.+...       .+..++ +|++|+|+++.+++   ..+..++..+ +.|+.|++.+|. ++....    
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~  101 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELV  101 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHH
Confidence            466666666655321       123455 56666666665532   2344444443 666666666654 221110    


Q ss_pred             --ccCC-CCccEEEEecCCCCceeE-E----EE--CCCceEEEEecccce----e----eeecCC-CccEEEEeeecCCC
Q 047476          216 --TVPN-LRLKRLVIDKCDFNQYRY-E----IA--APNLRFWKYSGTEGM----F----RVERQN-FLTEVELDFALQPD  276 (463)
Q Consensus       216 --~~~~-~~L~~L~i~~c~~~~~~~-~----i~--aP~L~~l~~~g~~~~----~----~~~~~~-~L~~l~l~~~~~~~  276 (463)
                        -... ++|+.|.+++|.+..... .    +.  ..+|++|.++++...    .    .+...+ +|+.+.+....-  
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l--  179 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL--  179 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG--
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC--
Confidence              0111 366666666655311100 0    00  136666666554321    0    112233 566666653211  


Q ss_pred             CchhHHHHHHHHhhcC-ccceEEEEeccccccccCCCCCCCCCC-CCceeEEEEecCCC-CchhhHHHHhhhcCCCcceE
Q 047476          277 FDEEIGEFLYELLRQL-EIVRVLTVCSFLLQVIPHAEEPFGMTV-PLEVKHLTLNAGMH-PHEYYGINFMLKSCPSLQTL  353 (463)
Q Consensus       277 ~~~~~~~~~~~ll~~l-~~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~-~~~~~~l~~lL~~~P~L~~L  353 (463)
                       .......+...+..+ ++++.|+|++..+.......-+..... ..+|++|+|..+.- ......+..+++.+++|+.|
T Consensus       180 -~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L  258 (362)
T 3goz_A          180 -ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTV  258 (362)
T ss_dssp             -GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEE
T ss_pred             -chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEE
Confidence             111134455666677 488888887665443110000000000 11688888876542 23345677778888999999


Q ss_pred             EEEcCC
Q 047476          354 TINIGP  359 (463)
Q Consensus       354 ~l~~~~  359 (463)
                      ++....
T Consensus       259 ~L~~n~  264 (362)
T 3goz_A          259 YLDYDI  264 (362)
T ss_dssp             EEEHHH
T ss_pred             EeccCC
Confidence            987663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.24  E-value=7.2e-07  Score=91.80  Aligned_cols=53  Identities=13%  Similarity=0.060  Sum_probs=28.7

Q ss_pred             cCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          291 QLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       291 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      .+++++.|.+.++.+..++...        .+|+.|.+..+.    +..+.   ..+++|+.|++...
T Consensus       199 ~~~~L~~L~L~~N~l~~l~~~~--------~~L~~L~Ls~N~----L~~lp---~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          199 LPSELYKLWAYNNRLTSLPALP--------SGLKELIVSGNR----LTSLP---VLPSELKELMVSGN  251 (622)
T ss_dssp             CCTTCCEEECCSSCCSSCCCCC--------TTCCEEECCSSC----CSCCC---CCCTTCCEEECCSS
T ss_pred             ccchhhEEECcCCcccccCCCC--------CCCCEEEccCCc----cCcCC---CCCCcCcEEECCCC
Confidence            3456666666555444333211        267788776532    11211   45678888887654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.21  E-value=2.3e-06  Score=88.19  Aligned_cols=211  Identities=18%  Similarity=0.147  Sum_probs=127.5

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCC-cCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLP-MHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIR  190 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp-~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~  190 (463)
                      ..++.|++.-..             ...+| ..+..+++|++|+|++|.+.   +..+..+++|++|+|++..++. --.
T Consensus        75 ~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~  140 (597)
T 3oja_B           75 RQVELLNLNDLQ-------------IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPR  140 (597)
T ss_dssp             CCCSEEECTTSC-------------CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCT
T ss_pred             CCCcEEECCCCC-------------CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC-CCH
Confidence            578888774221             12333 35667889999999999764   3356789999999999987652 112


Q ss_pred             HHHhcCCCceEEeecccCCCceee--cccCCCCccEEEEecCCCCceeEEE-ECCCceEEEEecccc-------------
Q 047476          191 ELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLVIDKCDFNQYRYEI-AAPNLRFWKYSGTEG-------------  254 (463)
Q Consensus       191 ~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~i~~c~~~~~~~~i-~aP~L~~l~~~g~~~-------------  254 (463)
                      .++.+++.|+.|++.++. +..+.  .-..+++|+.|.+.++.+.  .+.+ ..|+|+.+.+++...             
T Consensus       141 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~  217 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLT--HVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD  217 (597)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCS--BCCGGGCTTCSEEECCSSCCSEEECCTTCSEEE
T ss_pred             HHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCC--CcChhhhhhhhhhhcccCccccccCCchhheee
Confidence            345789999999999986 33322  2244679999999988742  2221 135555555544321             


Q ss_pred             ------e-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEE
Q 047476          255 ------M-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLT  327 (463)
Q Consensus       255 ------~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~  327 (463)
                            . +.....++|+.+.+....-..         ...+..+++++.|.+++..+..+...  .+  ....+|+.|.
T Consensus       218 ls~n~l~~~~~~~~~~L~~L~L~~n~l~~---------~~~l~~l~~L~~L~Ls~N~l~~~~~~--~~--~~l~~L~~L~  284 (597)
T 3oja_B          218 ASHNSINVVRGPVNVELTILKLQHNNLTD---------TAWLLNYPGLVEVDLSYNELEKIMYH--PF--VKMQRLERLY  284 (597)
T ss_dssp             CCSSCCCEEECSCCSCCCEEECCSSCCCC---------CGGGGGCTTCSEEECCSSCCCEEESG--GG--TTCSSCCEEE
T ss_pred             ccCCcccccccccCCCCCEEECCCCCCCC---------ChhhccCCCCCEEECCCCccCCCCHH--Hh--cCccCCCEEE
Confidence                  1 111122345555554322111         02366788899999887665533211  01  1112688888


Q ss_pred             EecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          328 LNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       328 l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      |..+.    +..+......+|+|+.|++....
T Consensus       285 Ls~N~----l~~l~~~~~~l~~L~~L~Ls~N~  312 (597)
T 3oja_B          285 ISNNR----LVALNLYGQPIPTLKVLDLSHNH  312 (597)
T ss_dssp             CTTSC----CCEEECSSSCCTTCCEEECCSSC
T ss_pred             CCCCC----CCCCCcccccCCCCcEEECCCCC
Confidence            86532    22333445678999999997654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.21  E-value=2.7e-06  Score=80.64  Aligned_cols=200  Identities=14%  Similarity=0.069  Sum_probs=129.9

Q ss_pred             eCCcCccCCCceeEEEeeeeeeCC---CCCCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecccCCCceeeccc
Q 047476          142 DLPMHVYGHVGLESLELFSCNINA---SRFNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKKCWEIEYLDITV  217 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~~---~~~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~  217 (463)
                      .+|..++  ++|++|++.++.+..   ..+..+++|++|++++..++. +.....+.+++.|+.|.+.++. +..+....
T Consensus       114 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~~~  190 (330)
T 1xku_A          114 ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQGL  190 (330)
T ss_dssp             BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCSSC
T ss_pred             ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCCccc
Confidence            4565544  689999999987652   235689999999999987753 2334557889999999999886 33332211


Q ss_pred             CCCCccEEEEecCCCCceeEE---E-ECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476          218 PNLRLKRLVIDKCDFNQYRYE---I-AAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELL  289 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~~~~~~~---i-~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll  289 (463)
                       .++|+.|.+.++.+  ..+.   + ..++|++|.+++.... +   .+..+++|+.+.+....-...        ..-+
T Consensus       191 -~~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l--------p~~l  259 (330)
T 1xku_A          191 -PPSLTELHLDGNKI--TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV--------PGGL  259 (330)
T ss_dssp             -CTTCSEEECTTSCC--CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC--------CTTT
T ss_pred             -cccCCEEECCCCcC--CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC--------Chhh
Confidence             25999999999873  2221   1 3589999999887543 2   356788999998875432111        1125


Q ss_pred             hcCccceEEEEeccccccccCCCC--CCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          290 RQLEIVRVLTVCSFLLQVIPHAEE--PFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      ..+++++.|.+++..+..++....  .........++.|.+....... +.....-++++++++.+++.
T Consensus       260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~-~~i~~~~f~~~~~l~~l~L~  327 (330)
T 1xku_A          260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY-WEIQPSTFRCVYVRAAVQLG  327 (330)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG-GGSCGGGGTTCCCGGGEEC-
T ss_pred             ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc-cccCccccccccceeEEEec
Confidence            678999999998877765543321  1111112367778776543211 11223457778888888774

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.21  E-value=2.4e-07  Score=95.63  Aligned_cols=27  Identities=19%  Similarity=0.245  Sum_probs=16.4

Q ss_pred             cceeEEEEEe--eecchhhHHHHHHHHhc
Q 047476          390 SSLRVVNVRG--FKGTMTEARFLNYLIFF  416 (463)
Q Consensus       390 ~~Lk~V~i~~--f~g~~~e~~l~~~ll~~  416 (463)
                      .+|+.+.+.|  +.++.....|+.++-++
T Consensus       545 ~~L~~l~l~~N~~~c~c~~~~~~~~l~~~  573 (606)
T 3vq2_A          545 KSLAFFNLTNNSVACICEHQKFLQWVKEQ  573 (606)
T ss_dssp             TTCCEEECCSCCCCCSSTTHHHHTTTTTS
T ss_pred             ccCcEEEccCCCcccCCccHHHHHHHHcC
Confidence            3689998887  34444555566654333

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.20  E-value=1.8e-07  Score=88.17  Aligned_cols=189  Identities=15%  Similarity=0.060  Sum_probs=101.6

Q ss_pred             CCCceeEEEeeeeeeC---CCCC--CCCCccceEEeccEeechh--HHHHHHh-cCCCceEEeecccCCCceee--cccC
Q 047476          149 GHVGLESLELFSCNIN---ASRF--NNFIALKELSLGWIQLSVQ--SIRELLV-QCPFLESLSLKKCWEIEYLD--ITVP  218 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~---~~~~--~~l~~L~~L~L~~~~~~~~--~l~~lls-~cp~Le~L~l~~c~~~~~~~--i~~~  218 (463)
                      .+++|++|+|+++.+.   +..+  ..+++|++|+|++..++..  .+..+.. .++.|+.|++.++.- ..+.  .-..
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l-~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC-CCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC-ccchHHHhcc
Confidence            5678999999998764   3333  6789999999998877442  3333322 248999999998863 3222  2234


Q ss_pred             CCCccEEEEecCCCCce-----eEE-EECCCceEEEEecccce-------eeeecCCCccEEEEeeecCCCCchhHHHHH
Q 047476          219 NLRLKRLVIDKCDFNQY-----RYE-IAAPNLRFWKYSGTEGM-------FRVERQNFLTEVELDFALQPDFDEEIGEFL  285 (463)
Q Consensus       219 ~~~L~~L~i~~c~~~~~-----~~~-i~aP~L~~l~~~g~~~~-------~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  285 (463)
                      +++|+.|.++++.+...     .+. -..++|++|.++++...       ..+..+++|+.+.+....-....      .
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~  245 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA------G  245 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC------C
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc------c
Confidence            66888888888763100     110 23467777777665322       01123455666655422110000      0


Q ss_pred             HHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          286 YELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       286 ~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      ......+++++.|.+++..+..++....       .+|++|++..+.-    ..+.. +..+|+|+.|++.
T Consensus       246 ~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-------~~L~~L~Ls~N~l----~~~p~-~~~l~~L~~L~L~  304 (312)
T 1wwl_A          246 APSCDWPSQLNSLNLSFTGLKQVPKGLP-------AKLSVLDLSYNRL----DRNPS-PDELPQVGNLSLK  304 (312)
T ss_dssp             CSCCCCCTTCCEEECTTSCCSSCCSSCC-------SEEEEEECCSSCC----CSCCC-TTTSCEEEEEECT
T ss_pred             hhhhhhcCCCCEEECCCCccChhhhhcc-------CCceEEECCCCCC----CCChh-HhhCCCCCEEecc
Confidence            0012234566666666555443332110       2566666654321    11122 4556666666663

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.19  E-value=2.1e-06  Score=78.94  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=65.4

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cc
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--IT  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~  216 (463)
                      .+|..+.  ++|++|+|+++.+.   +..+..+++|++|+|++..++.- -..++.+++.|+.|++.++. +..+.  .-
T Consensus        30 ~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~  105 (270)
T 2o6q_A           30 AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNK-LQALPIGVF  105 (270)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCCc-CCcCCHhHc
Confidence            3554443  57899999888764   23567889999999988765421 12234678899999998875 33332  22


Q ss_pred             cCCCCccEEEEecCCCCceeEE----EECCCceEEEEecc
Q 047476          217 VPNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGT  252 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~  252 (463)
                      ..+++|+.|.+.++.+  ..+.    -..++|++|.+++.
T Consensus       106 ~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQL--KSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             TTCSSCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccCCCEEECCCCcc--CeeCHHHhCcCcCCCEEECCCC
Confidence            3456888888887753  1111    12355666665554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.19  E-value=2.9e-07  Score=86.74  Aligned_cols=237  Identities=11%  Similarity=-0.019  Sum_probs=141.9

Q ss_pred             CccEEEEEEeCCcch-hHHHHHHHHHhCCCeEEEEee-cCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC--
Q 047476           89 IVKAFRLVFSRPVNF-LVQNCISFAIARDVKELALDF-HDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN--  164 (463)
Q Consensus        89 ~l~~l~l~~~~~~~~-~i~~wl~~~~~~~v~~L~l~~-~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~--  164 (463)
                      .|+.+.+......+. .+...+.  --..++.|++.- ..            ....+|..+..+++|++|+|+++.+.  
T Consensus        51 ~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~------------l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  116 (313)
T 1ogq_A           51 RVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINN------------LVGPIPPAIAKLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETT------------EESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred             eEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCc------------ccccCChhHhcCCCCCEEECcCCeeCCc
Confidence            577777775543320 1111111  125788888862 21            12256777888999999999998764  


Q ss_pred             -CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCC-CccEEEEecCCCCc-eeEEEE
Q 047476          165 -ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNL-RLKRLVIDKCDFNQ-YRYEIA  240 (463)
Q Consensus       165 -~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~-~L~~L~i~~c~~~~-~~~~i~  240 (463)
                       +..+..+++|++|+|++..++. .+...+.+++.|+.|++.++.-.+.+. .-..++ +|+.|.+.++.+.. ..-.+.
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~  195 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA  195 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred             CCHHHhCCCCCCEEeCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence             4457789999999999987652 122345789999999999986332322 112233 89999999886310 000112


Q ss_pred             CCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccc-cccCCCCCC
Q 047476          241 APNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQ-VIPHAEEPF  315 (463)
Q Consensus       241 aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~-~~~~~~~~~  315 (463)
                      ..+|+.|.+++....    ..+..+++|+.+.+....-....        ..+..+++++.|.+++..+. .++..-.  
T Consensus       196 ~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~p~~l~--  265 (313)
T 1ogq_A          196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL--------GKVGLSKNLNGLDLRNNRIYGTLPQGLT--  265 (313)
T ss_dssp             GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG--------GGCCCCTTCCEEECCSSCCEECCCGGGG--
T ss_pred             CCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec--------CcccccCCCCEEECcCCcccCcCChHHh--
Confidence            224899988876432    24567888999888643211000        01456899999999876654 2322111  


Q ss_pred             CCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476          316 GMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       316 ~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                         ...+|++|++..+.-..   .+.. ....|+|+.|++..
T Consensus       266 ---~l~~L~~L~Ls~N~l~~---~ip~-~~~l~~L~~l~l~~  300 (313)
T 1ogq_A          266 ---QLKFLHSLNVSFNNLCG---EIPQ-GGNLQRFDVSAYAN  300 (313)
T ss_dssp             ---GCTTCCEEECCSSEEEE---ECCC-STTGGGSCGGGTCS
T ss_pred             ---cCcCCCEEECcCCcccc---cCCC-CccccccChHHhcC
Confidence               11268888886542111   1111 15567777776643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.18  E-value=8.9e-06  Score=82.73  Aligned_cols=61  Identities=15%  Similarity=0.129  Sum_probs=31.1

Q ss_pred             hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      ..+++++.|.+++..+..++...      ...+|+.|+|..+.-.   ......+..+++|+.|++...+
T Consensus       448 ~~l~~L~~L~Ls~N~l~~ip~~~------~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          448 LFLPRLQELYISRNKLKTLPDAS------LFPVLLVMKISRNQLK---SVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             CCCTTCCEEECCSSCCSSCCCGG------GCTTCCEEECCSSCCC---CCCTTGGGGCTTCCEEECCSSC
T ss_pred             ccCChhcEEECCCCccCcCCCcc------cCccCCEEecCCCccC---CcCHHHHhcCcccCEEEecCCC
Confidence            35666677777665555443211      0115666666543211   0112235667777777775543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.16  E-value=2e-06  Score=80.04  Aligned_cols=187  Identities=17%  Similarity=0.076  Sum_probs=101.6

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-ccc
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITV  217 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~  217 (463)
                      .+|..+.  ++++.|+|+++.+.   +..+..+++|+.|+|++..++.-..   ...++.|+.|++.++. +..+. ...
T Consensus        24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~-l~~l~~~~~   97 (290)
T 1p9a_G           24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ-LQSLPLLGQ   97 (290)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC-CSSCCCCTT
T ss_pred             cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc-CCcCchhhc
Confidence            4555443  57888888877654   3456678888888888776532111   1577888888888775 23221 223


Q ss_pred             CCCCccEEEEecCCCCceeEE----EECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476          218 PNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELL  289 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll  289 (463)
                      .+++|+.|.++++.+  ..+.    -..++|++|.+++....    ..+..+++|+.+.+....-....       ...+
T Consensus        98 ~l~~L~~L~l~~N~l--~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~-------~~~~  168 (290)
T 1p9a_G           98 TLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-------AGLL  168 (290)
T ss_dssp             TCTTCCEEECCSSCC--CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-------TTTT
T ss_pred             cCCCCCEEECCCCcC--cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-------HHHh
Confidence            456788888877763  2221    12467777777665332    12344566666666532211100       0123


Q ss_pred             hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhhcCC
Q 047476          290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLKSCP  348 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~~~P  348 (463)
                      ..+++++.|.+++..++.++...     +...++++|.|.....  ..+..++...++.-+
T Consensus       169 ~~l~~L~~L~L~~N~l~~ip~~~-----~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~~  224 (290)
T 1p9a_G          169 NGLENLDTLLLQENSLYTIPKGF-----FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNA  224 (290)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTT-----TTTCCCSEEECCSCCBCCSGGGHHHHHHHHHTG
T ss_pred             cCcCCCCEEECCCCcCCccChhh-----cccccCCeEEeCCCCccCcCccHHHHHHHHhCc
Confidence            45667777777666655444321     1112566666654432  223344444554433

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.16  E-value=4.1e-06  Score=89.92  Aligned_cols=105  Identities=18%  Similarity=0.139  Sum_probs=68.7

Q ss_pred             CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccC
Q 047476          144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVP  218 (463)
Q Consensus       144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~  218 (463)
                      |..+..+++|++|+|.++.+.   +..+.++++|++|+|++..++.- ....+.++|.|+.|++.++. +..+.  .-..
T Consensus       283 ~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~  360 (844)
T 3j0a_A          283 SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYIDLQKNH-IAIIQDQTFKF  360 (844)
T ss_dssp             SCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEECCSCC-CCCCCSSCSCS
T ss_pred             hhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEECCCCC-CCccChhhhcC
Confidence            444556788999999888653   45677888999999988765321 11235678889999988874 33322  1233


Q ss_pred             CCCccEEEEecCCCCceeEEEECCCceEEEEeccc
Q 047476          219 NLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTE  253 (463)
Q Consensus       219 ~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~  253 (463)
                      +++|+.|.+.++...  .+. ..|+|+.+.+.++.
T Consensus       361 l~~L~~L~Ls~N~l~--~i~-~~~~L~~L~l~~N~  392 (844)
T 3j0a_A          361 LEKLQTLDLRDNALT--TIH-FIPSIPDIFLSGNK  392 (844)
T ss_dssp             CCCCCEEEEETCCSC--CCS-SCCSCSEEEEESCC
T ss_pred             CCCCCEEECCCCCCC--ccc-CCCCcchhccCCCC
Confidence            568888888887632  111 16677777776653

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.14  E-value=2.7e-06  Score=79.15  Aligned_cols=77  Identities=16%  Similarity=0.105  Sum_probs=33.9

Q ss_pred             CceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEec
Q 047476          151 VGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDK  229 (463)
Q Consensus       151 ~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~  229 (463)
                      ++|++|.+.++.+. .+.+..+++|++|+|++..++.-.  . +.+++.|+.|.+.++. +..+.--..+++|+.|.+.+
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTT
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCC
Confidence            34455555544433 223344555555555554442211  1 4455555555555543 22222222334555555555


Q ss_pred             CC
Q 047476          230 CD  231 (463)
Q Consensus       230 c~  231 (463)
                      |.
T Consensus       122 n~  123 (291)
T 1h6t_A          122 NG  123 (291)
T ss_dssp             SC
T ss_pred             Cc
Confidence            44

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.13  E-value=8.9e-07  Score=88.79  Aligned_cols=187  Identities=11%  Similarity=-0.019  Sum_probs=97.0

Q ss_pred             ccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L  225 (463)
                      +..+++|++|+|++|.+..-  ...++|++|+|++..++.-..    ..+|.|+.|.+.++.-.+... ....+++|+.|
T Consensus        76 l~~l~~L~~L~Ls~N~l~~l--~~~~~L~~L~L~~N~l~~~~~----~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  149 (487)
T 3oja_A           76 LESLSTLRTLDLNNNYVQEL--LVGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL  149 (487)
T ss_dssp             CTTCTTCCEEECCSSEEEEE--EECTTCCEEECCSSCCCCEEE----CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEE
T ss_pred             cccCCCCCEEEecCCcCCCC--CCCCCcCEEECcCCcCCCCCc----cccCCCCEEECCCCCCCCCCchhhcCCCCCCEE
Confidence            45566777777777765421  123677777777765532211    245777777777765221111 11234577777


Q ss_pred             EEecCCCCceeEE---E--ECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEE
Q 047476          226 VIDKCDFNQYRYE---I--AAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVL  298 (463)
Q Consensus       226 ~i~~c~~~~~~~~---i--~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L  298 (463)
                      .++++.+  ..+.   +  ..|+|+.|.++++...  .....+++|+.+.+....-....        .-+..+++++.|
T Consensus       150 ~Ls~N~l--~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~l~~L~~L  219 (487)
T 3oja_A          150 DLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG--------PEFQSAAGVTWI  219 (487)
T ss_dssp             ECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC--------GGGGGGTTCSEE
T ss_pred             ECCCCCC--CCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCC--------HhHcCCCCccEE
Confidence            7777653  2211   1  2467777777665432  12234666777666533211000        013456777777


Q ss_pred             EEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          299 TVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       299 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      .++++.+..++....     ...+|+.|.+..+...  ...+..++..+|.|+.|.+.
T Consensus       220 ~Ls~N~l~~lp~~l~-----~l~~L~~L~l~~N~l~--c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          220 SLRNNKLVLIEKALR-----FSQNLEHFDLRGNGFH--CGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECTTSCCCEECTTCC-----CCTTCCEEECTTCCBC--HHHHHHHHTTCHHHHHHHHH
T ss_pred             EecCCcCcccchhhc-----cCCCCCEEEcCCCCCc--CcchHHHHHhCCCCcEEecc
Confidence            776665554432211     1115666666543211  12455666667777666653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.13  E-value=3.4e-06  Score=77.64  Aligned_cols=83  Identities=17%  Similarity=0.047  Sum_probs=45.4

Q ss_pred             ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCCcc
Q 047476          147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLRLK  223 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~L~  223 (463)
                      +..+++|++|+|+++.+. .+.+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.-  -..+++|+
T Consensus        59 l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~  136 (272)
T 3rfs_A           59 IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLT  136 (272)
T ss_dssp             GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred             cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEECCCCc-CCccCHHHhccCCCCC
Confidence            445667777777766654 23455667777777776654321 11224566777777777664 222211  12344666


Q ss_pred             EEEEecCC
Q 047476          224 RLVIDKCD  231 (463)
Q Consensus       224 ~L~i~~c~  231 (463)
                      .|.+.+|.
T Consensus       137 ~L~L~~n~  144 (272)
T 3rfs_A          137 YLNLAHNQ  144 (272)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            66666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.11  E-value=1.6e-06  Score=89.12  Aligned_cols=102  Identities=24%  Similarity=0.154  Sum_probs=69.5

Q ss_pred             ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      +..+++|+.|.|++|.+. .+.+..+++|+.|+|++..+..-   .-+..||.|+.|.|.+|. +..+..-..+++|+.|
T Consensus        83 l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L  158 (605)
T 1m9s_A           83 LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNK-ITDITVLSRLTKLDTL  158 (605)
T ss_dssp             GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSEEECCSSC-CCCCGGGGSCTTCSEE
T ss_pred             hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCC---ccccCCCccCEEECCCCc-cCCchhhcccCCCCEE
Confidence            567788999999988775 45677889999999998876431   126788999999999886 4444444456788888


Q ss_pred             EEecCCCCceeEEEECCCceEEEEecc
Q 047476          226 VIDKCDFNQYRYEIAAPNLRFWKYSGT  252 (463)
Q Consensus       226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~  252 (463)
                      .+++|.+....-.-..|+|+.|.++++
T Consensus       159 ~Ls~N~l~~~~~l~~l~~L~~L~Ls~N  185 (605)
T 1m9s_A          159 SLEDNQISDIVPLAGLTKLQNLYLSKN  185 (605)
T ss_dssp             ECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             ECcCCcCCCchhhccCCCCCEEECcCC
Confidence            888886421100112455666665554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.11  E-value=1.5e-06  Score=83.27  Aligned_cols=62  Identities=19%  Similarity=0.141  Sum_probs=42.4

Q ss_pred             hHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCcee---EE-EECCCceEEEEe
Q 047476          187 QSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYR---YE-IAAPNLRFWKYS  250 (463)
Q Consensus       187 ~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~---~~-i~aP~L~~l~~~  250 (463)
                      .++..++..+|.|++|.|.++.++.-..+.  +++|++|.+..|......   +. ...|+|++|.++
T Consensus       162 ~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~--~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKP--RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             CBCHHHHHTCTTCCEEEEECCBTCBCCSCB--CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             cCHHHHHhcCCCCcEEEEeCCCCceecccc--CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            457789999999999999987543322232  569999999887642111   11 146888888764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.10  E-value=3.7e-06  Score=78.20  Aligned_cols=196  Identities=16%  Similarity=0.001  Sum_probs=128.2

Q ss_pred             ccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476          147 VYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV  226 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~  226 (463)
                      +.++++++++++.++.+..-...-.++|+.|+|++..++.-. ...+.+++.|+.|.+.++. +..+.....+++|+.|.
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEE
T ss_pred             ccccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccC-HHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEE
Confidence            345678999999888775211122578999999988764311 1245789999999999986 55555446678999999


Q ss_pred             EecCCCC-ceeEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476          227 IDKCDFN-QYRYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC  301 (463)
Q Consensus       227 i~~c~~~-~~~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~  301 (463)
                      ++++.+. +....-..|+|+.|.+++....    ..+..+++|+.+.+....-....       ...+..+++++.|.++
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-------PGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-------TTTTTTCTTCCEEECT
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC-------hhhcccccCCCEEECC
Confidence            9988742 1111113588999999887533    23567888999988743211111       1235678999999998


Q ss_pred             ccccccccCCCCCCCCCC-CCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCC
Q 047476          302 SFLLQVIPHAEEPFGMTV-PLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPG  360 (463)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~  360 (463)
                      +..+..++...     +. ..+|++|.|..+.    +..+..-+...++|+.|++...+.
T Consensus       157 ~N~l~~l~~~~-----~~~l~~L~~L~L~~N~----l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          157 NNNLTELPAGL-----LNGLENLDTLLLQENS----LYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TSCCSCCCTTT-----TTTCTTCCEEECCSSC----CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CCcCCccCHHH-----hcCcCCCCEEECCCCc----CCccChhhcccccCCeEEeCCCCc
Confidence            87776554321     11 1278899886542    223333345667999999876543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.10  E-value=9.1e-07  Score=83.45  Aligned_cols=184  Identities=11%  Similarity=-0.010  Sum_probs=79.0

Q ss_pred             CCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEEE
Q 047476          149 GHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLV  226 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~  226 (463)
                      .+++|++|+|+++.+..-  ...++|++|++++..++.-.    ...++.|+.|.+.++.- ..+.  ....+++|+.|.
T Consensus        78 ~l~~L~~L~Ls~n~l~~l--~~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~  150 (317)
T 3o53_A           78 SLSTLRTLDLNNNYVQEL--LVGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLD  150 (317)
T ss_dssp             TCTTCCEEECCSSEEEEE--EECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCC-CSGGGBCTGGGSSEEEEE
T ss_pred             hcCCCCEEECcCCccccc--cCCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCC-CCccchhhhccCCCCEEE
Confidence            344555555554443210  01245555555544332211    11245555555555531 1110  111234566666


Q ss_pred             EecCCCCceeEEE-----ECCCceEEEEecccce-e-eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEE
Q 047476          227 IDKCDFNQYRYEI-----AAPNLRFWKYSGTEGM-F-RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLT  299 (463)
Q Consensus       227 i~~c~~~~~~~~i-----~aP~L~~l~~~g~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~  299 (463)
                      ++++.+  ..+..     ..++|+.|.++++... + ....+++|+.+.+....-....        .-+..+++++.|.
T Consensus       151 Ls~N~l--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~~~l~~L~~L~  220 (317)
T 3o53_A          151 LKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMG--------PEFQSAAGVTWIS  220 (317)
T ss_dssp             CTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEEC--------GGGGGGTTCSEEE
T ss_pred             CCCCCC--CcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcch--------hhhcccCcccEEE
Confidence            665542  22211     1356666666554322 1 1223555666555432111000        0134456666666


Q ss_pred             EeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          300 VCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       300 l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      +++..+..++..-     ....+|++|.+..+.-.  ...+..++..+|+|+.|.+.
T Consensus       221 L~~N~l~~l~~~~-----~~l~~L~~L~l~~N~~~--~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          221 LRNNKLVLIEKAL-----RFSQNLEHFDLRGNGFH--CGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CTTSCCCEECTTC-----CCCTTCCEEECTTCCCB--HHHHHHHHHTCHHHHHHHHH
T ss_pred             CcCCcccchhhHh-----hcCCCCCEEEccCCCcc--CcCHHHHHhccccceEEECC
Confidence            6655544333211     01115666666543221  12455556666666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.07  E-value=3.5e-06  Score=89.91  Aligned_cols=87  Identities=21%  Similarity=0.221  Sum_probs=43.9

Q ss_pred             eCCcCccCCCceeEEEeeeee-eCC----C-------CCCCCCccceEEeccEeechhHHHH--HHhcCCCceEEeeccc
Q 047476          142 DLPMHVYGHVGLESLELFSCN-INA----S-------RFNNFIALKELSLGWIQLSVQSIRE--LLVQCPFLESLSLKKC  207 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~-~~~----~-------~~~~l~~L~~L~L~~~~~~~~~l~~--lls~cp~Le~L~l~~c  207 (463)
                      .+|..+.++++|++|+|+++. +..    .       .+..+++|+.|+|++..++  .+..  .+.+++.|+.|++.++
T Consensus       506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~l~~L~~L~~L~Ls~N  583 (876)
T 4ecn_A          506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--EFPASASLQKMVKLGLLDCVHN  583 (876)
T ss_dssp             SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--BCCCHHHHTTCTTCCEEECTTS
T ss_pred             cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC--ccCChhhhhcCCCCCEEECCCC
Confidence            455555666666666666664 321    1       2234456666666665554  3322  4556666666666655


Q ss_pred             CCCceeecccCCCCccEEEEecCC
Q 047476          208 WEIEYLDITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       208 ~~~~~~~i~~~~~~L~~L~i~~c~  231 (463)
                      . +..+..-..+++|+.|.+.++.
T Consensus       584 ~-l~~lp~~~~L~~L~~L~Ls~N~  606 (876)
T 4ecn_A          584 K-VRHLEAFGTNVKLTDLKLDYNQ  606 (876)
T ss_dssp             C-CCBCCCCCTTSEESEEECCSSC
T ss_pred             C-cccchhhcCCCcceEEECcCCc
Confidence            4 2222212223345555554443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.06  E-value=1.5e-06  Score=81.34  Aligned_cols=83  Identities=18%  Similarity=0.116  Sum_probs=36.5

Q ss_pred             CCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee-ecccCCCCccEE
Q 047476          149 GHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL-DITVPNLRLKRL  225 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~-~i~~~~~~L~~L  225 (463)
                      .+++|++|+|+++.+.  +..+..+++|++|++++..++.-.....+.+++.|+.|++.++...... ..-..+++|+.|
T Consensus        76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL  155 (306)
T ss_dssp             SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence            4455555555555432  2223445555555555554432111122345555555555555311111 011223455555


Q ss_pred             EEecCC
Q 047476          226 VIDKCD  231 (463)
Q Consensus       226 ~i~~c~  231 (463)
                      .+.++.
T Consensus       156 ~l~~n~  161 (306)
T 2z66_A          156 KMAGNS  161 (306)
T ss_dssp             ECTTCE
T ss_pred             ECCCCc
Confidence            555544

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.06  E-value=2.4e-06  Score=78.56  Aligned_cols=182  Identities=16%  Similarity=0.197  Sum_probs=109.2

Q ss_pred             CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEE
Q 047476          149 GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRL  225 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L  225 (463)
                      ..++|++|.+.++.+. .+.+..+++|+.|+|++..++.-   .-+.+++.|+.|.+.++. +..+.  .-..+++|+.|
T Consensus        39 ~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred             cccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEE
Confidence            3456777877777664 34566788888888888766432   135678888888888875 33322  12345688888


Q ss_pred             EEecCCCCceeEE---E-ECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceE
Q 047476          226 VIDKCDFNQYRYE---I-AAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRV  297 (463)
Q Consensus       226 ~i~~c~~~~~~~~---i-~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~  297 (463)
                      .+.+|.+  ..+.   + ..++|++|.++++... +   .+..+++|+.+.+....-....       ...+..+++++.
T Consensus       115 ~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~~  185 (272)
T 3rfs_A          115 VLVENQL--QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-------EGVFDKLTQLKD  185 (272)
T ss_dssp             ECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------TTTTTTCTTCCE
T ss_pred             ECCCCcC--CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-------HHHhcCCccCCE
Confidence            8888763  2221   1 2478888888776432 1   2456777888877644211111       123456788899


Q ss_pred             EEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476          298 LTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       298 L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                      |.+.+..+..++...  +.  ...+|++|.+..+..          ...||+|+.|.+..
T Consensus       186 L~L~~N~l~~~~~~~--~~--~l~~L~~L~l~~N~~----------~~~~~~l~~l~~~~  231 (272)
T 3rfs_A          186 LRLYQNQLKSVPDGV--FD--RLTSLQYIWLHDNPW----------DCTCPGIRYLSEWI  231 (272)
T ss_dssp             EECCSSCCSCCCTTT--TT--TCTTCCEEECCSSCB----------CCCTTTTHHHHHHH
T ss_pred             EECCCCcCCccCHHH--Hh--CCcCCCEEEccCCCc----------cccCcHHHHHHHHH
Confidence            988876665433210  11  112688888865431          23466777666543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.06  E-value=3.4e-05  Score=77.90  Aligned_cols=183  Identities=14%  Similarity=0.049  Sum_probs=91.3

Q ss_pred             eeEEEeeeeeeCCCCC-CCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCc--ee-ecccCCCCccEEEEe
Q 047476          153 LESLELFSCNINASRF-NNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIE--YL-DITVPNLRLKRLVID  228 (463)
Q Consensus       153 L~~L~L~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~--~~-~i~~~~~~L~~L~i~  228 (463)
                      |++|++.++.+.+..+ ..+++|++|+|++..+++... ..+.+++.|+.|.+.++.-.+  .+ ..-..+++|+.|.++
T Consensus       304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF-ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT-TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             eeEEEcCCCccccccchhhCCcccEEEeECCccChhhh-hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            4444444444432221 456666666666665543111 223566666666666665221  11 011234566666666


Q ss_pred             cCCCCc--ee-EEEECCCceEEEEecccce-eeeecC-CCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecc
Q 047476          229 KCDFNQ--YR-YEIAAPNLRFWKYSGTEGM-FRVERQ-NFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSF  303 (463)
Q Consensus       229 ~c~~~~--~~-~~i~aP~L~~l~~~g~~~~-~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~  303 (463)
                      +|....  .. ..-..++|++|.++++... ...... ++|+.+.+....-...        ..-+..+++++.|.+++.
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~i--------p~~~~~l~~L~~L~L~~N  454 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSI--------PKQVVKLEALQELNVASN  454 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCC--------CGGGGGCTTCCEEECCSS
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccccc--------chhhhcCCCCCEEECCCC
Confidence            665311  10 0112466666666655321 111122 4677666654321111        111337899999999888


Q ss_pred             ccccccCCCCCCCCCCCCceeEEEEecCCCC--chhhHH-HHhhhcCC
Q 047476          304 LLQVIPHAEEPFGMTVPLEVKHLTLNAGMHP--HEYYGI-NFMLKSCP  348 (463)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~l-~~lL~~~P  348 (463)
                      .+..++..  .+.  ...+|+.|.+..+.-.  .+..++ ...++.-+
T Consensus       455 ~l~~l~~~--~~~--~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~  498 (520)
T 2z7x_B          455 QLKSVPDG--IFD--RLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNS  498 (520)
T ss_dssp             CCCCCCTT--TTT--TCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTT
T ss_pred             cCCccCHH--Hhc--cCCcccEEECcCCCCcccCCchHHHHHHHHhcc
Confidence            77755433  011  1127899998765432  233444 55565544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.06  E-value=7e-06  Score=88.11  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=70.3

Q ss_pred             CceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee--ecccCCCCccEE
Q 047476          151 VGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL--DITVPNLRLKRL  225 (463)
Q Consensus       151 ~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~--~i~~~~~~L~~L  225 (463)
                      ++|++|+|+++.+.   +..+..+++|+.|+|++..++.-. ...+.+++.|+.|++.++. +..+  ..-..+++|+.|
T Consensus       266 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA-DEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             SCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC-TTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEE
T ss_pred             CCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC-hHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEE
Confidence            57888888877543   455667888888888877653211 1234678888888888775 2222  122345688888


Q ss_pred             EEecCCCCceeEE----EECCCceEEEEecccceeeeecCCCccEEEEe
Q 047476          226 VIDKCDFNQYRYE----IAAPNLRFWKYSGTEGMFRVERQNFLTEVELD  270 (463)
Q Consensus       226 ~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~  270 (463)
                      .+.++.+  ..+.    -..|+|+.|.++++... .+..+++|+.+.+.
T Consensus       344 ~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~L~~L~l~  389 (844)
T 3j0a_A          344 DLQKNHI--AIIQDQTFKFLEKLQTLDLRDNALT-TIHFIPSIPDIFLS  389 (844)
T ss_dssp             ECCSCCC--CCCCSSCSCSCCCCCEEEEETCCSC-CCSSCCSCSEEEEE
T ss_pred             ECCCCCC--CccChhhhcCCCCCCEEECCCCCCC-cccCCCCcchhccC
Confidence            8887763  2111    22578888888776432 22335566666654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.05  E-value=2.6e-06  Score=87.83  Aligned_cols=194  Identities=13%  Similarity=0.047  Sum_probs=118.4

Q ss_pred             ccCCCceeEEEeeeeeeC-----CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee--ecccCC
Q 047476          147 VYGHVGLESLELFSCNIN-----ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL--DITVPN  219 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-----~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~--~i~~~~  219 (463)
                      +..+++|++|+|+++.+.     +..+..+++|++|+|++..+..-.  ..+.+++.|+.|.+.++.-.+..  ..-..+
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  423 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANFMGLEELQHLDFQHSTLKRVTEFSAFLSL  423 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch--hhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence            446778999999887653     334457888999998887653311  34567888999988887522211  122346


Q ss_pred             CCccEEEEecCCCCceeE----EEECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhh
Q 047476          220 LRLKRLVIDKCDFNQYRY----EIAAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLR  290 (463)
Q Consensus       220 ~~L~~L~i~~c~~~~~~~----~i~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~  290 (463)
                      ++|+.|.+++|..  ...    .-..++|++|.+.++...     ..+..+++|+.+.+....-...       ....+.
T Consensus       424 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~  494 (606)
T 3vq2_A          424 EKLLYLDISYTNT--KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQI-------SWGVFD  494 (606)
T ss_dssp             TTCCEEECTTSCC--EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEE-------CTTTTT
T ss_pred             ccCCEEECcCCCC--CccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCcc-------Chhhhc
Confidence            6888888888863  111    113578888888776322     2356678888888764321100       012356


Q ss_pred             cCccceEEEEeccccccc-cCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCC-CcceEEEEcCCC
Q 047476          291 QLEIVRVLTVCSFLLQVI-PHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCP-SLQTLTINIGPG  360 (463)
Q Consensus       291 ~l~~l~~L~l~~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P-~L~~L~l~~~~~  360 (463)
                      .+++++.|.+++..+..+ +..-   .  ...+|++|++..+.    +..+..-+...| +|+.|++...+.
T Consensus       495 ~l~~L~~L~Ls~N~l~~~~~~~~---~--~l~~L~~L~l~~N~----l~~~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          495 TLHRLQLLNMSHNNLLFLDSSHY---N--QLYSLSTLDCSFNR----IETSKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             TCTTCCEEECCSSCCSCEEGGGT---T--TCTTCCEEECTTSC----CCCEESCGGGSCTTCCEEECCSCCC
T ss_pred             ccccCCEEECCCCcCCCcCHHHc---c--CCCcCCEEECCCCc----CcccCHhHhhhcccCcEEEccCCCc
Confidence            788899999987665533 1111   1  11168888886542    122333366676 599999876544

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.05  E-value=6e-06  Score=81.88  Aligned_cols=80  Identities=15%  Similarity=0.089  Sum_probs=34.0

Q ss_pred             CceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCccEE
Q 047476          151 VGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRL  225 (463)
Q Consensus       151 ~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L  225 (463)
                      ++|++|+|+++.+.   +..+..+++|++|+|++..+...--...+.+++.|+.|++.++.- ..+.  .-..+++|+.|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF-LQLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT-CEECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc-CccChhhccCcccCCEE
Confidence            34555555554432   234445555555555544321111111234455555555555431 2110  11223455555


Q ss_pred             EEecCC
Q 047476          226 VIDKCD  231 (463)
Q Consensus       226 ~i~~c~  231 (463)
                      .+.+|.
T Consensus       109 ~L~~n~  114 (455)
T 3v47_A          109 TLTQCN  114 (455)
T ss_dssp             ECTTSC
T ss_pred             eCCCCC
Confidence            555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.03  E-value=3.4e-06  Score=71.37  Aligned_cols=89  Identities=21%  Similarity=0.190  Sum_probs=67.9

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---eccc
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITV  217 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~  217 (463)
                      .+|..+..+++|++|+|.+|.+. ...+..+++|+.|+|++..++.. +..++.++|.|+.|++.++. +..+   ..-.
T Consensus        40 ~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~  117 (168)
T 2ell_A           40 KIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK  117 (168)
T ss_dssp             BCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS
T ss_pred             hHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh
Confidence            56766677889999999999775 35667899999999999877543 55667789999999999985 3332   2334


Q ss_pred             CCCCccEEEEecCCC
Q 047476          218 PNLRLKRLVIDKCDF  232 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~  232 (463)
                      .+++|+.|.+.+|.+
T Consensus       118 ~l~~L~~L~l~~N~l  132 (168)
T 2ell_A          118 KLECLKSLDLFNCEV  132 (168)
T ss_dssp             SCSCCCEEECCSSGG
T ss_pred             cCCCCCEEEeeCCcC
Confidence            567888888888864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.03  E-value=4e-07  Score=85.66  Aligned_cols=52  Identities=15%  Similarity=0.203  Sum_probs=26.1

Q ss_pred             ccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          293 EIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       293 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      ++++.|.++++.+..++...     .  .+|++|+|..+.-    ..+ ..+..+|+|+.|++.
T Consensus       251 ~~L~~L~Ls~N~l~~lp~~~-----~--~~L~~L~Ls~N~l----~~~-~~~~~l~~L~~L~L~  302 (310)
T 4glp_A          251 SALNSLNLSFAGLEQVPKGL-----P--AKLRVLDLSSNRL----NRA-PQPDELPEVDNLTLD  302 (310)
T ss_dssp             TTCCCEECCSSCCCSCCSCC-----C--SCCSCEECCSCCC----CSC-CCTTSCCCCSCEECS
T ss_pred             CcCCEEECCCCCCCchhhhh-----c--CCCCEEECCCCcC----CCC-chhhhCCCccEEECc
Confidence            56666666655555333221     0  1566666654321    111 114556777777664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.02  E-value=3.1e-06  Score=80.33  Aligned_cols=193  Identities=15%  Similarity=0.114  Sum_probs=83.1

Q ss_pred             CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476          146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL  220 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~  220 (463)
                      .+..+++|++|+|+++.+.   +..+..+++|++|+|++..++.  +..  .-.+.|++|++.++. +..+.  .-..++
T Consensus        73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~~L~~L~l~~n~-i~~~~~~~~~~l~  147 (332)
T 2ft3_A           73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPSSLVELRIHDNR-IRKVPKGVFSGLR  147 (332)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCTTCCEEECCSSC-CCCCCSGGGSSCS
T ss_pred             HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccccCCEEECCCCc-cCccCHhHhCCCc
Confidence            3445556666666665443   2345556666666666554421  000  012566666666554 22221  122344


Q ss_pred             CccEEEEecCCCC---ceeEEEECCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476          221 RLKRLVIDKCDFN---QYRYEIAAPNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR  296 (463)
Q Consensus       221 ~L~~L~i~~c~~~---~~~~~i~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~  296 (463)
                      +|+.|.+.++...   .....+...+|+.|.+++.... +.....++|+.+.+....-....       ...+..+++++
T Consensus       148 ~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~-------~~~l~~l~~L~  220 (332)
T 2ft3_A          148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIE-------LEDLLRYSKLY  220 (332)
T ss_dssp             SCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCC-------TTSSTTCTTCS
T ss_pred             cCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccC-------HHHhcCCCCCC
Confidence            6666666655421   0000111124555554443211 11111234555544422111000       01234556666


Q ss_pred             EEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       297 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      .|.+++..+..++...  +.  ...+|++|.+..+.    +..+..-+..+|+|+.|++...
T Consensus       221 ~L~L~~N~l~~~~~~~--~~--~l~~L~~L~L~~N~----l~~lp~~l~~l~~L~~L~l~~N  274 (332)
T 2ft3_A          221 RLGLGHNQIRMIENGS--LS--FLPTLRELHLDNNK----LSRVPAGLPDLKLLQVVYLHTN  274 (332)
T ss_dssp             CCBCCSSCCCCCCTTG--GG--GCTTCCEEECCSSC----CCBCCTTGGGCTTCCEEECCSS
T ss_pred             EEECCCCcCCcCChhH--hh--CCCCCCEEECCCCc----CeecChhhhcCccCCEEECCCC
Confidence            6666655444322110  00  01156666665432    1122223566777777777544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.01  E-value=3.7e-06  Score=85.97  Aligned_cols=244  Identities=13%  Similarity=0.054  Sum_probs=148.3

Q ss_pred             CCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476          143 LPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL  220 (463)
Q Consensus       143 lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~  220 (463)
                      .|..+..+++|++|++.++.+.  +..+..+ +|++|++.++.+..  +..  ..++.|+.|.+.++........ ..++
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~  347 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSE-VDLP  347 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCC-CBCT
T ss_pred             chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCcccccccc-ccCC
Confidence            4445566788999999888765  3345566 89999998887642  111  4789999999998864443333 4567


Q ss_pred             CccEEEEecCCCCceeEE------EECCCceEEEEecccce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhc
Q 047476          221 RLKRLVIDKCDFNQYRYE------IAAPNLRFWKYSGTEGM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQ  291 (463)
Q Consensus       221 ~L~~L~i~~c~~~~~~~~------i~aP~L~~l~~~g~~~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~  291 (463)
                      +|+.|.+.+|..  ..+.      ...++|++|.++++...   ..+..+++|+.+.+....-...      .....+..
T Consensus       348 ~L~~L~l~~n~l--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~------~~~~~~~~  419 (570)
T 2z63_A          348 SLEFLDLSRNGL--SFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM------SEFSVFLS  419 (570)
T ss_dssp             TCCEEECCSSCC--BEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC------TTSCTTTT
T ss_pred             CCCEEeCcCCcc--CccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccc------cchhhhhc
Confidence            999999998873  2221      13689999998886432   2367888999988863211000      00013467


Q ss_pred             CccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCCCCCCCCCCCCCC
Q 047476          292 LEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGPGRRFPNYRPPFE  371 (463)
Q Consensus       292 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~~~~~~~~~~~~~  371 (463)
                      +++++.|.+++..+......  .+.  ...+|++|.+..+.-.  ...+...+..+|+|+.|++.......         
T Consensus       420 l~~L~~L~l~~n~l~~~~~~--~~~--~l~~L~~L~l~~n~l~--~~~~p~~~~~l~~L~~L~l~~n~l~~---------  484 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNG--IFN--GLSSLEVLKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQCQLEQ---------  484 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTT--TTT--TCTTCCEEECTTCEEG--GGEECSCCTTCTTCCEEECTTSCCCE---------
T ss_pred             CCCCCEEeCcCCcccccchh--hhh--cCCcCcEEECcCCcCc--cccchhhhhcccCCCEEECCCCcccc---------
Confidence            89999999977654432111  011  1127888888653211  01244567889999999995442210         


Q ss_pred             CCchhhhccccccccccccceeEEEEEeeecchhhHHHHHHHHhccccccceeeecc
Q 047476          372 LDPEKCWTKNIVLYPCVTSSLRVVNVRGFKGTMTEARFLNYLIFFGNVLQELNLYLS  428 (463)
Q Consensus       372 ~~~~~~w~~~~~~~~c~~~~Lk~V~i~~f~g~~~e~~l~~~ll~~a~~L~~m~i~~~  428 (463)
                      .       .+..+  ....+|+.+.+.+-.-..-    ....+.+.+.|+.+.+...
T Consensus       485 ~-------~~~~~--~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          485 L-------SPTAF--NSLSSLQVLNMASNQLKSV----PDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             E-------CTTTT--TTCTTCCEEECCSSCCSCC----CTTTTTTCTTCCEEECCSS
T ss_pred             C-------Chhhh--hcccCCCEEeCCCCcCCCC----CHHHhhcccCCcEEEecCC
Confidence            0       00111  1236889998876432211    1123466788999888754

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.99  E-value=7e-05  Score=75.53  Aligned_cols=61  Identities=26%  Similarity=0.275  Sum_probs=40.8

Q ss_pred             eCCcCccCCCceeEEEeeeeeeCC----CCCCCCCccceEEeccEeechhHHHHHHhcCCCc--eEEeecccC
Q 047476          142 DLPMHVYGHVGLESLELFSCNINA----SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFL--ESLSLKKCW  208 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~~----~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~L--e~L~l~~c~  208 (463)
                      .+|..  .+++|++|+|+++.+..    ..+..+++|++|+|++..++...    +.+++.|  +.|.+.++.
T Consensus        83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS----VLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG----GGGGTTSCEEEEEEEECT
T ss_pred             ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhh----ccccccceeeEEEeeccc
Confidence            45554  56778888888776542    34567788888888877665533    3556667  888877764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.99  E-value=8.4e-06  Score=73.32  Aligned_cols=171  Identities=11%  Similarity=0.072  Sum_probs=98.6

Q ss_pred             ceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCCccEE
Q 047476          152 GLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLRLKRL  225 (463)
Q Consensus       152 ~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~L~~L  225 (463)
                      +|++|+|+++.+.   +..+..+++|++|+|++.. ++.-. ...+.+++.|+.|++.+|..+..+..  -..+++|+.|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            7999999988764   3467789999999999874 42110 11346889999999998666665542  2245688888


Q ss_pred             EEecCCCCceeEEEECCCceEEEEecccceeeeecCCCcc---EEEEeeecCCCCchhHHHHHHHHhhcCccce-EEEEe
Q 047476          226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLT---EVELDFALQPDFDEEIGEFLYELLRQLEIVR-VLTVC  301 (463)
Q Consensus       226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~---~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~-~L~l~  301 (463)
                      .+.++.+.  .+    |.              +..+++|+   .+.+........-      ....+..+++++ .|.++
T Consensus       111 ~l~~n~l~--~l----p~--------------~~~l~~L~~L~~L~l~~N~~l~~i------~~~~~~~l~~L~~~L~l~  164 (239)
T 2xwt_C          111 GIFNTGLK--MF----PD--------------LTKVYSTDIFFILEITDNPYMTSI------PVNAFQGLCNETLTLKLY  164 (239)
T ss_dssp             EEEEECCC--SC----CC--------------CTTCCBCCSEEEEEEESCTTCCEE------CTTTTTTTBSSEEEEECC
T ss_pred             eCCCCCCc--cc----cc--------------cccccccccccEEECCCCcchhhc------CcccccchhcceeEEEcC
Confidence            88877631  11    10              11222333   4443321000000      001245678888 88887


Q ss_pred             ccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHH-HHhhhcC-CCcceEEEEc
Q 047476          302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGI-NFMLKSC-PSLQTLTINI  357 (463)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l-~~lL~~~-P~L~~L~l~~  357 (463)
                      +..+..++...     +...+|++|.+..+..   +..+ ...+..+ ++|+.|++..
T Consensus       165 ~n~l~~i~~~~-----~~~~~L~~L~L~~n~~---l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          165 NNGFTSVQGYA-----FNGTKLDAVYLNKNKY---LTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             SCCCCEECTTT-----TTTCEEEEEECTTCTT---CCEECTTTTTTCSBCCSEEECTT
T ss_pred             CCCCcccCHhh-----cCCCCCCEEEcCCCCC---cccCCHHHhhccccCCcEEECCC
Confidence            76665554321     1112688888765410   1111 2235667 8999998854

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.98  E-value=4.8e-06  Score=76.22  Aligned_cols=77  Identities=30%  Similarity=0.349  Sum_probs=43.6

Q ss_pred             CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEE
Q 047476          149 GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLV  226 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~  226 (463)
                      .+++|++|++.++.+. .+.+..+++|++|+|++..+++-.  . +.+++.|+.|++.++. +..+. +..  ++|+.|.
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L~  112 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRLF  112 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEEE
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCCcCcccc--CcccEEE
Confidence            4456666776666554 234556677777777766553211  1 5667777777777664 22221 111  4666666


Q ss_pred             EecCC
Q 047476          227 IDKCD  231 (463)
Q Consensus       227 i~~c~  231 (463)
                      +++|.
T Consensus       113 L~~N~  117 (263)
T 1xeu_A          113 LDNNE  117 (263)
T ss_dssp             CCSSC
T ss_pred             ccCCc
Confidence            66665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=97.97  E-value=1.4e-05  Score=73.90  Aligned_cols=185  Identities=17%  Similarity=0.099  Sum_probs=92.3

Q ss_pred             ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476          147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL  220 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~  220 (463)
                      +..+++|++|+|+++.+.   +..+..+++|++|+|++.. ++.-. ...+.+++.|+.|++.++.- ..+.  .-..++
T Consensus        52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~  129 (285)
T 1ozn_A           52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGL-QELGPGLFRGLA  129 (285)
T ss_dssp             TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCT
T ss_pred             cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCCEEECCCCcC-CEECHhHhhCCc
Confidence            445566677777666443   3445566667777766653 22110 12245566677777766642 2211  122345


Q ss_pred             CccEEEEecCCCCceeEE---E-ECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcC
Q 047476          221 RLKRLVIDKCDFNQYRYE---I-AAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQL  292 (463)
Q Consensus       221 ~L~~L~i~~c~~~~~~~~---i-~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l  292 (463)
                      +|+.|.+.++.+  ..+.   + ..++|++|.+++.... +   .+..+++|+.+.+....-...       ....+..+
T Consensus       130 ~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------~~~~~~~l  200 (285)
T 1ozn_A          130 ALQYLYLQDNAL--QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV-------HPHAFRDL  200 (285)
T ss_dssp             TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-------CTTTTTTC
T ss_pred             CCCEEECCCCcc--cccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc-------CHhHccCc
Confidence            666666666653  1111   1 2466666666665322 1   244566677776653221100       01224567


Q ss_pred             ccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhhc
Q 047476          293 EIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLKS  346 (463)
Q Consensus       293 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~~  346 (463)
                      ++++.|.+++..+..++...  +.  ...+|++|.+....-  .....++...++.
T Consensus       201 ~~L~~L~l~~n~l~~~~~~~--~~--~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~  252 (285)
T 1ozn_A          201 GRLMTLYLFANNLSALPTEA--LA--PLRALQYLRLNDNPWVCDCRARPLWAWLQK  252 (285)
T ss_dssp             TTCCEEECCSSCCSCCCHHH--HT--TCTTCCEEECCSSCEECSGGGHHHHHHHHH
T ss_pred             ccccEeeCCCCcCCcCCHHH--cc--cCcccCEEeccCCCccCCCCcHHHHHHHHh
Confidence            88888888776555332110  00  111678888765532  2223344444443

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.95  E-value=3.5e-06  Score=77.10  Aligned_cols=36  Identities=19%  Similarity=0.517  Sum_probs=34.1

Q ss_pred             ccccCCchHHHHHHHhcCCchhHH-hhhccccchhhh
Q 047476            8 DMFSKLTNDLVTVIISYLPFKEAA-RTSILSRRWRHI   43 (463)
Q Consensus         8 D~is~LPd~lL~~ILs~Lp~~d~~-rts~lSrrWr~l   43 (463)
                      ..++.||||+|..||++||.++++ +++.|||+||.+
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l   85 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKEL   85 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHH
Confidence            468899999999999999999999 999999999986

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.95  E-value=2.7e-06  Score=88.26  Aligned_cols=206  Identities=13%  Similarity=0.109  Sum_probs=104.4

Q ss_pred             eCCc--CccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCC-ceEEeecccCCCceeec-
Q 047476          142 DLPM--HVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPF-LESLSLKKCWEIEYLDI-  215 (463)
Q Consensus       142 ~lp~--~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~-Le~L~l~~c~~~~~~~i-  215 (463)
                      .+|.  .+..+++|++|+|+++.+.  .+.+..+++|++|+|++..++  .+..-+.+++. |+.|++.++. +..+.- 
T Consensus       319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~  395 (636)
T 4eco_A          319 TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNK-LKYIPNI  395 (636)
T ss_dssp             SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSC-CSSCCSC
T ss_pred             ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCc-Ccccchh
Confidence            5666  5666777777777777543  225566777777777776654  33333566777 8888777765 222211 


Q ss_pred             -c-cCCCCccEEEEecCCCCc---eeEE------EECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchh
Q 047476          216 -T-VPNLRLKRLVIDKCDFNQ---YRYE------IAAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEE  280 (463)
Q Consensus       216 -~-~~~~~L~~L~i~~c~~~~---~~~~------i~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~  280 (463)
                       . ..+++|+.|.+++|.+..   ..+.      ...++|+.|.++++... +   .+..+++|+.+.+....-......
T Consensus       396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~  475 (636)
T 4eco_A          396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN  475 (636)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred             hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence             1 112367777777765411   1111      13456777777665432 1   122356677776653221100000


Q ss_pred             HHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476          281 IGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       281 ~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                      ........++.+++++.|.++...+..++....   .....+|++|.|..+.    +..+..-+..+++|+.|++..
T Consensus       476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~---~~~l~~L~~L~Ls~N~----l~~ip~~~~~l~~L~~L~Ls~  545 (636)
T 4eco_A          476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR---ATTLPYLVGIDLSYNS----FSKFPTQPLNSSTLKGFGIRN  545 (636)
T ss_dssp             SSEETTEECTTGGGCCEEECCSSCCCBCCGGGS---TTTCTTCCEEECCSSC----CSSCCCGGGGCSSCCEEECCS
T ss_pred             HhccccccccccCCccEEECcCCcCCccChhhh---hccCCCcCEEECCCCC----CCCcChhhhcCCCCCEEECCC
Confidence            000000001122367777776665554332110   0011267777775432    122333455678888887743

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.93  E-value=3.7e-06  Score=69.54  Aligned_cols=89  Identities=24%  Similarity=0.234  Sum_probs=67.9

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---eccc
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITV  217 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~  217 (463)
                      .+|..+..+++|++|++++|.+. ...+..+++|++|+|++..++.. +...+.+++.|+.|++.++. +..+   ..-.
T Consensus        33 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~  110 (149)
T 2je0_A           33 KLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLK  110 (149)
T ss_dssp             BCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEECTTSC-CCSHHHHGGGG
T ss_pred             HHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEECCCCc-CCChHHHHHHh
Confidence            46666677889999999998775 35667899999999999877543 56677789999999999986 3332   2334


Q ss_pred             CCCCccEEEEecCCC
Q 047476          218 PNLRLKRLVIDKCDF  232 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~  232 (463)
                      .+++|+.|.+.+|.+
T Consensus       111 ~l~~L~~L~l~~N~l  125 (149)
T 2je0_A          111 KLENLKSLDLFNCEV  125 (149)
T ss_dssp             GCTTCCEEECTTCGG
T ss_pred             hCCCCCEEeCcCCcc
Confidence            466888888888763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.91  E-value=1.7e-06  Score=82.16  Aligned_cols=97  Identities=16%  Similarity=0.130  Sum_probs=47.6

Q ss_pred             CceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEE
Q 047476          151 VGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVI  227 (463)
Q Consensus       151 ~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i  227 (463)
                      ++|++|+|+++.+.   +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.... .++|+.|.+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~l~~~~-~~~L~~L~l  130 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKNH-LVEIPPNL-PSSLVELRI  130 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGSTTCTTCCEEECCSSC-CCSCCSSC-CTTCCEEEC
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCcc-CHhHhhCcCCCCEEECCCCc-CCccCccc-cccCCEEEC
Confidence            35666666665442   33455666666666665544211 01223556666666666554 22221111 136666666


Q ss_pred             ecCCCCceeEE----EECCCceEEEEecc
Q 047476          228 DKCDFNQYRYE----IAAPNLRFWKYSGT  252 (463)
Q Consensus       228 ~~c~~~~~~~~----i~aP~L~~l~~~g~  252 (463)
                      .++..  ..+.    -..++|+.|.+.+.
T Consensus       131 ~~n~i--~~~~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          131 HDNRI--RKVPKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             CSSCC--CCCCSGGGSSCSSCCEEECCSC
T ss_pred             CCCcc--CccCHhHhCCCccCCEEECCCC
Confidence            66542  1111    12456666666554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.89  E-value=1e-05  Score=73.39  Aligned_cols=171  Identities=18%  Similarity=0.206  Sum_probs=95.5

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cc
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--IT  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~  216 (463)
                      .+|..+.  ++|++|+|+++.+.   +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.  .-
T Consensus        28 ~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~  103 (251)
T 3m19_A           28 SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQ-LASLPLGVF  103 (251)
T ss_dssp             SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCTTTT
T ss_pred             ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCc-ccccChhHh
Confidence            4665544  57899999988764   34577899999999998776431 12335678999999999876 33332  22


Q ss_pred             cCCCCccEEEEecCCCCceeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476          217 VPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR  296 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~  296 (463)
                      ..+++|+.|.+.++.+  ..+.-                ..+..+++|+.+.+....-....       ...+..+++++
T Consensus       104 ~~l~~L~~L~L~~N~l--~~~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~l~~L~  158 (251)
T 3m19_A          104 DHLTQLDKLYLGGNQL--KSLPS----------------GVFDRLTKLKELRLNTNQLQSIP-------AGAFDKLTNLQ  158 (251)
T ss_dssp             TTCTTCCEEECCSSCC--CCCCT----------------TTTTTCTTCCEEECCSSCCCCCC-------TTTTTTCTTCC
T ss_pred             cccCCCCEEEcCCCcC--CCcCh----------------hHhccCCcccEEECcCCcCCccC-------HHHcCcCcCCC
Confidence            3456888888887763  11110                01122334444444321110000       01244677888


Q ss_pred             EEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCC---chhhHHHHhhh
Q 047476          297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHP---HEYYGINFMLK  345 (463)
Q Consensus       297 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---~~~~~l~~lL~  345 (463)
                      .|.|++..+..++...  +.  ...+|++|.+..+.-.   .+...+...++
T Consensus       159 ~L~L~~N~l~~~~~~~--~~--~l~~L~~L~l~~N~~~c~~~~~~~l~~~~~  206 (251)
T 3m19_A          159 TLSLSTNQLQSVPHGA--FD--RLGKLQTITLFGNQFDCSRCEILYLSQWIR  206 (251)
T ss_dssp             EEECCSSCCSCCCTTT--TT--TCTTCCEEECCSCCBCTTSTTHHHHHHHHH
T ss_pred             EEECCCCcCCccCHHH--Hh--CCCCCCEEEeeCCceeCCccccHHHHHHHH
Confidence            8888776655443211  11  1126788887654321   33444555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.88  E-value=7.1e-06  Score=69.38  Aligned_cols=19  Identities=21%  Similarity=0.058  Sum_probs=15.1

Q ss_pred             HhhhcCCCcceEEEEcCCC
Q 047476          342 FMLKSCPSLQTLTINIGPG  360 (463)
Q Consensus       342 ~lL~~~P~L~~L~l~~~~~  360 (463)
                      ..+..+|+|+.|++.....
T Consensus       141 ~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          141 SVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             HHHTTCSSCCEETTEETTS
T ss_pred             HHHHhCccCcEecCCCCCh
Confidence            4678899999999877653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.85  E-value=0.00015  Score=73.82  Aligned_cols=64  Identities=14%  Similarity=0.234  Sum_probs=34.6

Q ss_pred             hcCccceEEEEecccccc-ccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          290 RQLEIVRVLTVCSFLLQV-IPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      ..+++++.|.+++..+.. ++..   +  ....+|+.|.+..+.- .++..+...+..+++|+.|++....
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~---~--~~l~~L~~L~L~~N~l-~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQG---C--STLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTT---C--CSCSSCCEEECCSSCC-CBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             cCCCCceEEECCCCccccchhhh---h--cccCCCCEEECCCCCc-CCcccchhhhcCCCCCCEEECCCCc
Confidence            455666666665544332 1110   0  1112678888765421 2233555667788888888886543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.85  E-value=1.5e-05  Score=73.06  Aligned_cols=152  Identities=16%  Similarity=0.118  Sum_probs=91.0

Q ss_pred             CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476          146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL  220 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~  220 (463)
                      .+..+++|++|+|+++.+.   +..+..+++|++|+|++..++.-. ...+.+++.|+.|.+.++. +..+.  .-..++
T Consensus        56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~  133 (270)
T 2o6q_A           56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT  133 (270)
T ss_dssp             SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence            4567789999999988764   234567999999999987664211 1345788999999999875 33322  123467


Q ss_pred             CccEEEEecCCCCceeEEE----ECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476          221 RLKRLVIDKCDFNQYRYEI----AAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR  296 (463)
Q Consensus       221 ~L~~L~i~~c~~~~~~~~i----~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~  296 (463)
                      +|+.|.++++.+  ..+..    ..++|++|.+++....                    ...       ...+..+++++
T Consensus       134 ~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~--------------------~~~-------~~~~~~l~~L~  184 (270)
T 2o6q_A          134 KLTYLSLGYNEL--QSLPKGVFDKLTSLKELRLYNNQLK--------------------RVP-------EGAFDKLTELK  184 (270)
T ss_dssp             TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCS--------------------CCC-------TTTTTTCTTCC
T ss_pred             CCCEEECCCCcC--CccCHhHccCCcccceeEecCCcCc--------------------EeC-------hhHhccCCCcC
Confidence            999999998863  22110    1355555555443210                    000       01234567778


Q ss_pred             EEEEeccccccccCCCCCCCCCCCCceeEEEEecCC
Q 047476          297 VLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGM  332 (463)
Q Consensus       297 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  332 (463)
                      .|.+++..+..++...  +.  ...+|++|.+....
T Consensus       185 ~L~L~~N~l~~~~~~~--~~--~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          185 TLKLDNNQLKRVPEGA--FD--SLEKLKMLQLQENP  216 (270)
T ss_dssp             EEECCSSCCSCCCTTT--TT--TCTTCCEEECCSSC
T ss_pred             EEECCCCcCCcCCHHH--hc--cccCCCEEEecCCC
Confidence            8887766555443211  11  11167788876543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.84  E-value=2.7e-06  Score=81.80  Aligned_cols=69  Identities=12%  Similarity=0.065  Sum_probs=31.3

Q ss_pred             HHHHhhc-CccceEEEEeccccccccCCCCCCCCCC-CCceeEEEEecCC-CCchhhHHHHhhhcCCCcceEE
Q 047476          285 LYELLRQ-LEIVRVLTVCSFLLQVIPHAEEPFGMTV-PLEVKHLTLNAGM-HPHEYYGINFMLKSCPSLQTLT  354 (463)
Q Consensus       285 ~~~ll~~-l~~l~~L~l~~~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~-~~~~~~~l~~lL~~~P~L~~L~  354 (463)
                      +...+.. .++++.|+|+++.+.......-. .... ..+|++|.+..+. .......+..+.+.++++++|.
T Consensus       216 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~  287 (362)
T 3goz_A          216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLK-LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII  287 (362)
T ss_dssp             HHHHHHHSCTTCCEEECCSSCCCCCCHHHHH-HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEE
T ss_pred             HHHHHhcCCCCceEEECcCCCCCcHHHHHHH-HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceE
Confidence            3344444 45888888876654432110000 0001 1168888887643 1112233444444444444444

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.82  E-value=4.5e-06  Score=75.49  Aligned_cols=34  Identities=18%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             ccCCchHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476           10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI   43 (463)
Q Consensus        10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l   43 (463)
                      |+.||+||+.+|||||+.+|+++++.|||+||.+
T Consensus         5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999953

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.82  E-value=1.2e-05  Score=79.83  Aligned_cols=32  Identities=19%  Similarity=0.103  Sum_probs=14.5

Q ss_pred             ceeEEEeeeeeeC-CCCCCCCCccceEEeccEe
Q 047476          152 GLESLELFSCNIN-ASRFNNFIALKELSLGWIQ  183 (463)
Q Consensus       152 ~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~  183 (463)
                      +|++|++++|.+. .+.+..+++|++|++++..
T Consensus       132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~  164 (454)
T 1jl5_A          132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS  164 (454)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             CCCEEECcCCCCCCCcccCCCCCCCEEECCCCc
Confidence            4455555544432 1234444555555554443

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.79  E-value=9e-06  Score=80.64  Aligned_cols=51  Identities=14%  Similarity=0.105  Sum_probs=29.0

Q ss_pred             ccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          293 EIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       293 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      ++++.|.+++..+..++...        .+|+.|++..+.-.    .+..   .+++|+.|++...
T Consensus       317 ~~L~~L~Ls~N~l~~lp~~~--------~~L~~L~L~~N~l~----~lp~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          317 PSLEELNVSNNKLIELPALP--------PRLERLIASFNHLA----EVPE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             TTCCEEECCSSCCSCCCCCC--------TTCCEEECCSSCCS----CCCC---CCTTCCEEECCSS
T ss_pred             CcCCEEECCCCccccccccC--------CcCCEEECCCCccc----cccc---hhhhccEEECCCC
Confidence            46777777665554433221        26888887654211    1111   3678888888654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.78  E-value=2.2e-05  Score=70.53  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=51.2

Q ss_pred             CccCCCceeEEEeeeee-eC---CCCCCCCCccceEEecc-EeechhHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476          146 HVYGHVGLESLELFSCN-IN---ASRFNNFIALKELSLGW-IQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL  220 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~-~~---~~~~~~l~~L~~L~L~~-~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~  220 (463)
                      .+..+++|++|+|+++. +.   +..+..+++|++|+|++ ..++.-. ...+.+++.|+.|++.++. +..+.--..++
T Consensus        50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~  127 (239)
T 2xwt_C           50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLLKFLGIFNTG-LKMFPDLTKVY  127 (239)
T ss_dssp             TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTCCEEEEEEEC-CCSCCCCTTCC
T ss_pred             HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCCCEEeCCCCC-Ccccccccccc
Confidence            34567788888888874 43   34566788888888876 3332100 1234578888888888875 22222122344


Q ss_pred             Ccc---EEEEecC
Q 047476          221 RLK---RLVIDKC  230 (463)
Q Consensus       221 ~L~---~L~i~~c  230 (463)
                      +|+   .|.+.++
T Consensus       128 ~L~~L~~L~l~~N  140 (239)
T 2xwt_C          128 STDIFFILEITDN  140 (239)
T ss_dssp             BCCSEEEEEEESC
T ss_pred             ccccccEEECCCC
Confidence            555   7777776

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.76  E-value=2.3e-05  Score=66.20  Aligned_cols=60  Identities=13%  Similarity=0.143  Sum_probs=49.1

Q ss_pred             CCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec---cc---CCCCccEEEEecCC
Q 047476          171 FIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI---TV---PNLRLKRLVIDKCD  231 (463)
Q Consensus       171 l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i---~~---~~~~L~~L~i~~c~  231 (463)
                      -.+|+.|+|+++.+++.++..+ ++|+.|+.|+|.+|..+++..+   ..   .+++|++|++++|.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~  125 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG  125 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT
T ss_pred             CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC
Confidence            3479999999999999998776 7999999999999988776432   22   13479999999987

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.76  E-value=5.3e-06  Score=68.60  Aligned_cols=55  Identities=22%  Similarity=0.118  Sum_probs=28.8

Q ss_pred             CceeEEEeeeeeeC----CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          151 VGLESLELFSCNIN----ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       151 ~~L~~L~L~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      ++|++|++++|.+.    +..+..+++|+.|++++..++.-   ..+.+++.|+.|++.++.
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~   75 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR   75 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc
Confidence            45666766666554    12334566666666665544322   234445555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.75  E-value=0.00012  Score=74.58  Aligned_cols=168  Identities=13%  Similarity=0.053  Sum_probs=92.9

Q ss_pred             ceeEEEeeeeeeCCCCC-CCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee----cccCCCCccEEE
Q 047476          152 GLESLELFSCNINASRF-NNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD----ITVPNLRLKRLV  226 (463)
Q Consensus       152 ~L~~L~L~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~----i~~~~~~L~~L~  226 (463)
                      +|++|++.++.+.+..+ ..+++|++|+|++..+++. +...+.+++.|+.|.+.++. +..+.    .-..+++|+.|.
T Consensus       332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~  409 (562)
T 3a79_B          332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDS-VFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD  409 (562)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTT-TTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE
T ss_pred             cceEEEccCCCcccccCccCCCCceEEECCCCccccc-hhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE
Confidence            46666666665543332 5677777777777665431 12234567777777777764 22211    123355777777


Q ss_pred             EecCCCCc--e-eEEEECCCceEEEEecccce-eeeecC-CCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEe
Q 047476          227 IDKCDFNQ--Y-RYEIAAPNLRFWKYSGTEGM-FRVERQ-NFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVC  301 (463)
Q Consensus       227 i~~c~~~~--~-~~~i~aP~L~~l~~~g~~~~-~~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~  301 (463)
                      ++++....  . ...-..++|+.|.++++... .....+ ++|+.+.+....-....        .-+..+++++.|.++
T Consensus       410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip--------~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIP--------KDVTHLQALQELNVA  481 (562)
T ss_dssp             CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCC--------TTTTSSCCCSEEECC
T ss_pred             CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccC--------hhhcCCCCCCEEECC
Confidence            77766311  1 11123467777777665432 112223 46777777643211110        112378899999998


Q ss_pred             ccccccccCCCCCCCCCCCCceeEEEEecCCC
Q 047476          302 SFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH  333 (463)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  333 (463)
                      +..+..++...  +..  ..+|+.|.+....-
T Consensus       482 ~N~l~~l~~~~--~~~--l~~L~~L~l~~N~~  509 (562)
T 3a79_B          482 SNQLKSVPDGV--FDR--LTSLQYIWLHDNPW  509 (562)
T ss_dssp             SSCCCCCCTTS--TTT--CTTCCCEECCSCCB
T ss_pred             CCCCCCCCHHH--Hhc--CCCCCEEEecCCCc
Confidence            88777655431  111  12788888876543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.75  E-value=1.8e-05  Score=82.70  Aligned_cols=13  Identities=15%  Similarity=-0.018  Sum_probs=8.3

Q ss_pred             CCCccEEEEecCC
Q 047476          219 NLRLKRLVIDKCD  231 (463)
Q Consensus       219 ~~~L~~L~i~~c~  231 (463)
                      +++|+.|.+.++.
T Consensus       404 l~~L~~L~L~~N~  416 (680)
T 1ziw_A          404 LGHLEVLDLGLNE  416 (680)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEeCCCCc
Confidence            4567777776665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.72  E-value=9.1e-06  Score=85.01  Aligned_cols=121  Identities=16%  Similarity=0.054  Sum_probs=59.8

Q ss_pred             ccCCCceeEEEeeeeeeC-----CCCCCC--CCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--ccc
Q 047476          147 VYGHVGLESLELFSCNIN-----ASRFNN--FIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITV  217 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-----~~~~~~--l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~  217 (463)
                      +..+++|++|+|++|.+.     ...+..  .++|+.|++++..++.-. ...+.+++.|+.|++.++.-.+.+.  .-.
T Consensus       349 ~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  427 (680)
T 1ziw_A          349 FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE-SDAFSWLGHLEVLDLGLNEIGQELTGQEWR  427 (680)
T ss_dssp             TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred             hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEC-hhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence            456778888888776432     122222  246777777666543210 1224566777777777665222211  112


Q ss_pred             CCCCccEEEEecCCCCceeEE----EECCCceEEEEecccc------eeeeecCCCccEEEEe
Q 047476          218 PNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEG------MFRVERQNFLTEVELD  270 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~------~~~~~~~~~L~~l~l~  270 (463)
                      .+++|+.|.+++|..  ..+.    ...|+|+.|.+.+...      +..+..+++|+.+.+.
T Consensus       428 ~l~~L~~L~Ls~n~l--~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls  488 (680)
T 1ziw_A          428 GLENIFEIYLSYNKY--LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS  488 (680)
T ss_dssp             TCTTCCEEECCSCSE--EECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred             CcccccEEecCCCCc--ceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence            345666666666542  1100    0245666666554321      1223445556655554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.72  E-value=3.1e-05  Score=71.19  Aligned_cols=174  Identities=13%  Similarity=0.092  Sum_probs=102.8

Q ss_pred             CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCC
Q 047476          146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLR  221 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~  221 (463)
                      .+..+++|++|+|+++.+.   +..+..+++|++|+|++..++.-. ...+.+++.|+.|.+.++....... .-..+++
T Consensus        47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  125 (276)
T 2z62_A           47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKT  125 (276)
T ss_dssp             TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred             HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC-hhhhcCCccccEEECCCCCccccCchhcccCCC
Confidence            4566789999999988654   345778999999999987653221 1235678999999999875222111 1234568


Q ss_pred             ccEEEEecCCCCc---eeEEEECCCceEEEEecccce-e---eeecCCCcc----EEEEeeecCCCCchhHHHHHHHHhh
Q 047476          222 LKRLVIDKCDFNQ---YRYEIAAPNLRFWKYSGTEGM-F---RVERQNFLT----EVELDFALQPDFDEEIGEFLYELLR  290 (463)
Q Consensus       222 L~~L~i~~c~~~~---~~~~i~aP~L~~l~~~g~~~~-~---~~~~~~~L~----~l~l~~~~~~~~~~~~~~~~~~ll~  290 (463)
                      |+.|.+.++.+..   ....-..++|++|.++++... +   .+..++.|+    .+.+....-....        .-..
T Consensus       126 L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~--------~~~~  197 (276)
T 2z62_A          126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ--------PGAF  197 (276)
T ss_dssp             CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC--------TTSS
T ss_pred             CCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC--------cccc
Confidence            9999999887421   111113588999998876432 2   233444555    3333211100000        0011


Q ss_pred             cCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCC
Q 047476          291 QLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGM  332 (463)
Q Consensus       291 ~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  332 (463)
                      ...+++.|.+++..+..++...  +.  ...+|++|.+....
T Consensus       198 ~~~~L~~L~L~~n~l~~~~~~~--~~--~l~~L~~L~l~~N~  235 (276)
T 2z62_A          198 KEIRLKELALDTNQLKSVPDGI--FD--RLTSLQKIWLHTNP  235 (276)
T ss_dssp             CSCCEEEEECCSSCCSCCCTTT--TT--TCCSCCEEECCSSC
T ss_pred             CCCcccEEECCCCceeecCHhH--hc--ccccccEEEccCCc
Confidence            2347999999877666443211  01  11278899987653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.67  E-value=0.00014  Score=74.97  Aligned_cols=205  Identities=14%  Similarity=0.109  Sum_probs=109.0

Q ss_pred             ceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--
Q 047476          140 VFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--  214 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--  214 (463)
                      ...+|..+.  +++++|+|+++.+.   +..|.++++|++|+|++..++.-. ...+.+++.|+.|+|.++. +..+.  
T Consensus        43 l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~~~  118 (635)
T 4g8a_A           43 FYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALG  118 (635)
T ss_dssp             CSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECGG
T ss_pred             cCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCCHH
Confidence            345665443  36888888887653   456778888888888887653100 1234678888888888875 44443  


Q ss_pred             cccCCCCccEEEEecCCCC-ceeEEE-ECCCceEEEEecccce-----eeeecCCCccEEEEeeecCCCCchhHHHHHHH
Q 047476          215 ITVPNLRLKRLVIDKCDFN-QYRYEI-AAPNLRFWKYSGTEGM-----FRVERQNFLTEVELDFALQPDFDEEIGEFLYE  287 (463)
Q Consensus       215 i~~~~~~L~~L~i~~c~~~-~~~~~i-~aP~L~~l~~~g~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~  287 (463)
                      .-..+++|+.|.+.+|... .....+ ..++|++|.+++....     ..+..++.|+.+.+....-....   ...+..
T Consensus       119 ~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~  195 (635)
T 4g8a_A          119 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY---CTDLRV  195 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC---GGGGHH
T ss_pred             HhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc---cccccc
Confidence            2234668888888887631 111112 2577888877765321     22455677777776532211000   011111


Q ss_pred             HhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEcC
Q 047476          288 LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       288 ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      +-..-.....+.++...+..++..     .+....+..|.+.....  ........+...+.++...+...
T Consensus       196 L~~l~~~~~~~~ls~n~l~~i~~~-----~~~~~~~~~l~l~~n~~--~~~~~~~~~~~l~~l~~~~l~~~  259 (635)
T 4g8a_A          196 LHQMPLLNLSLDLSLNPMNFIQPG-----AFKEIRLHKLTLRNNFD--SLNVMKTCIQGLAGLEVHRLVLG  259 (635)
T ss_dssp             HHTCTTCCCEEECTTCCCCEECTT-----TTTTCEEEEEEEESCCS--SHHHHHHHHHTTTTCEEEEEEEE
T ss_pred             hhhhhhhhhhhhcccCcccccCcc-----cccchhhhhhhhhcccc--cccccchhhcCCccccccccccc
Confidence            111111223344443333322211     11222456666654332  23344556677777777766544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.65  E-value=7.8e-05  Score=69.81  Aligned_cols=148  Identities=14%  Similarity=0.064  Sum_probs=88.4

Q ss_pred             cCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeec-hhHHHH--HHhcCCCceEEeecccCCCceee-----cc
Q 047476          148 YGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLS-VQSIRE--LLVQCPFLESLSLKKCWEIEYLD-----IT  216 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~-~~~l~~--lls~cp~Le~L~l~~c~~~~~~~-----i~  216 (463)
                      ..+++|++|+|++|.+.   +..+..+++|++|+|++..+. ...+..  .+..+|.|+.|.+.+|. +..+.     +.
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHH
Confidence            35678888888888664   345567888888888887643 233321  23577888888888875 33221     11


Q ss_pred             cCCCCccEEEEecCCCCce---eEEEE--CCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhh
Q 047476          217 VPNLRLKRLVIDKCDFNQY---RYEIA--APNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLR  290 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~~~~~---~~~i~--aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~  290 (463)
                      ..+++|+.|.++++.+...   .+.-.  .|+|++|.++++... +.-.-.++|+.+.+....-...         ..+.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~---------~~~~  291 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRA---------PQPD  291 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSC---------CCTT
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCC---------chhh
Confidence            2345888888888764211   01111  268888888776433 1111135788887764322111         1145


Q ss_pred             cCccceEEEEecccc
Q 047476          291 QLEIVRVLTVCSFLL  305 (463)
Q Consensus       291 ~l~~l~~L~l~~~~~  305 (463)
                      .+++++.|.+++..+
T Consensus       292 ~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          292 ELPEVDNLTLDGNPF  306 (310)
T ss_dssp             SCCCCSCEECSSTTT
T ss_pred             hCCCccEEECcCCCC
Confidence            678899999876543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.64  E-value=1.8e-05  Score=80.39  Aligned_cols=183  Identities=14%  Similarity=0.063  Sum_probs=111.0

Q ss_pred             hCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHH
Q 047476          114 ARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELL  193 (463)
Q Consensus       114 ~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~ll  193 (463)
                      ..+++.|++....             ...+|..++  ++|++|+|+++.+..-. ..+++|++|+|++..++.  +.. +
T Consensus        58 ~~~L~~L~Ls~n~-------------L~~lp~~l~--~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~--ip~-l  118 (571)
T 3cvr_A           58 INQFSELQLNRLN-------------LSSLPDNLP--PQITVLEITQNALISLP-ELPASLEYLDACDNRLST--LPE-L  118 (571)
T ss_dssp             HTTCSEEECCSSC-------------CSCCCSCCC--TTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC--CCC-C
T ss_pred             cCCccEEEeCCCC-------------CCccCHhHc--CCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC--cch-h
Confidence            4578888885321             123666554  68999999999876322 568999999999987643  322 3


Q ss_pred             hcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEEECCCceEEEEecccce-ee-eecCCCccEEEEee
Q 047476          194 VQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM-FR-VERQNFLTEVELDF  271 (463)
Q Consensus       194 s~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~-~~-~~~~~~L~~l~l~~  271 (463)
                      .+  .|+.|++.++. +..+.-  .+++|+.|.++++.+.  .+.-..++|+.|.++++... +. +.  ++|+.+.+..
T Consensus       119 ~~--~L~~L~Ls~N~-l~~lp~--~l~~L~~L~Ls~N~l~--~lp~~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          119 PA--SLKHLDVDNNQ-LTMLPE--LPALLEYINADNNQLT--MLPELPTSLEVLSVRNNQLTFLPELP--ESLEALDVST  189 (571)
T ss_dssp             CT--TCCEEECCSSC-CSCCCC--CCTTCCEEECCSSCCS--CCCCCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCS
T ss_pred             hc--CCCEEECCCCc-CCCCCC--cCccccEEeCCCCccC--cCCCcCCCcCEEECCCCCCCCcchhh--CCCCEEECcC
Confidence            22  99999999886 333322  4669999999998742  22225679999998886432 11 22  6788887764


Q ss_pred             ecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC
Q 047476          272 ALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH  333 (463)
Q Consensus       272 ~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  333 (463)
                      ..-..... ...   .+....+.++.|.|+++.+..++....     ...+|+.|.|..+.-
T Consensus       190 N~L~~lp~-~~~---~L~~~~~~L~~L~Ls~N~l~~lp~~l~-----~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          190 NLLESLPA-VPV---RNHHSEETEIFFRCRENRITHIPENIL-----SLDPTCTIILEDNPL  242 (571)
T ss_dssp             SCCSSCCC-CC-----------CCEEEECCSSCCCCCCGGGG-----GSCTTEEEECCSSSC
T ss_pred             CCCCchhh-HHH---hhhcccccceEEecCCCcceecCHHHh-----cCCCCCEEEeeCCcC
Confidence            32111100 000   122223334888888777665543211     112688888876543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.64  E-value=0.00011  Score=68.90  Aligned_cols=194  Identities=15%  Similarity=0.050  Sum_probs=109.9

Q ss_pred             CCccEEEEEEeCCcchhHHHHHHHHHhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCC-----CceeEEEeeeee
Q 047476           88 TIVKAFRLVFSRPVNFLVQNCISFAIARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGH-----VGLESLELFSCN  162 (463)
Q Consensus        88 ~~l~~l~l~~~~~~~~~i~~wl~~~~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~-----~~L~~L~L~~~~  162 (463)
                      ..++.+.+......+.....++ ...-..++.|++.-..             ...+|..+...     ++|++|+|+++.
T Consensus        95 ~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~l~~~~~~~L~~L~L~~N~  160 (312)
T 1wwl_A           95 SGLQELTLENLEVTGTAPPPLL-EATGPDLNILNLRNVS-------------WATRDAWLAELQQWLKPGLKVLSIAQAH  160 (312)
T ss_dssp             SCCCEEEEEEEBCBSCCCCCSS-SCCSCCCSEEEEESCB-------------CSSSSSHHHHHHTTCCTTCCEEEEESCS
T ss_pred             CCccEEEccCCcccchhHHHHH-HhcCCCccEEEccCCC-------------CcchhHHHHHHHHhhcCCCcEEEeeCCC
Confidence            4678888876643321100000 0112467888775321             11123333332     788999998886


Q ss_pred             eC---CCCCCCCCccceEEeccEeech-hHHHHHH--hcCCCceEEeecccCCCcee-----ecccCCCCccEEEEecCC
Q 047476          163 IN---ASRFNNFIALKELSLGWIQLSV-QSIRELL--VQCPFLESLSLKKCWEIEYL-----DITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       163 ~~---~~~~~~l~~L~~L~L~~~~~~~-~~l~~ll--s~cp~Le~L~l~~c~~~~~~-----~i~~~~~~L~~L~i~~c~  231 (463)
                      +.   +..+..+++|++|+|++..+.. ..+..-+  ..++.|+.|++.++. +..+     .+...+++|+.|.++++.
T Consensus       161 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~  239 (312)
T 1wwl_A          161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS  239 (312)
T ss_dssp             CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred             CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc
Confidence            64   3456788889999998876532 2232223  678889999998885 3321     111234588889888886


Q ss_pred             CCce---eEEEECCCceEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecccc
Q 047476          232 FNQY---RYEIAAPNLRFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLL  305 (463)
Q Consensus       232 ~~~~---~~~i~aP~L~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~  305 (463)
                      +...   ......++|+.|.++++... +.-.-.++|+.+.+....-...        .. +..+++++.|.+.+..+
T Consensus       240 l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~--------p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN--------PS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSC--------CC-TTTSCEEEEEECTTCTT
T ss_pred             CCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCC--------hh-HhhCCCCCEEeccCCCC
Confidence            4221   11122578888888876433 1111115677777764321111        11 55788899999876543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.63  E-value=1.3e-05  Score=77.16  Aligned_cols=22  Identities=18%  Similarity=0.274  Sum_probs=16.8

Q ss_pred             hhHHHHhhhcCCCcceEEEEcC
Q 047476          337 YYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       337 ~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      ...+...++.+|+|++|+|...
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECTTS
T ss_pred             HHHHHHHHHhCCCCCEEeccCC
Confidence            3567777888999999988544

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.59  E-value=5.5e-05  Score=72.22  Aligned_cols=58  Identities=10%  Similarity=0.129  Sum_probs=33.9

Q ss_pred             HhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          288 LLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       288 ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      .+..+++++.|++++..++.++...     +  -++++|.+....   ....+.. +..+++|+.+++.
T Consensus       197 ~f~~l~~L~~LdLs~N~l~~lp~~~-----~--~~L~~L~~l~~~---~l~~lP~-l~~l~~L~~l~l~  254 (350)
T 4ay9_X          197 VFHGASGPVILDISRTRIHSLPSYG-----L--ENLKKLRARSTY---NLKKLPT-LEKLVALMEASLT  254 (350)
T ss_dssp             TTTTEECCSEEECTTSCCCCCCSSS-----C--TTCCEEECTTCT---TCCCCCC-TTTCCSCCEEECS
T ss_pred             HhccCcccchhhcCCCCcCccChhh-----h--ccchHhhhccCC---CcCcCCC-chhCcChhhCcCC
Confidence            3567788889998877777665322     1  156666653321   1112221 5667788887773

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.58  E-value=3.8e-05  Score=70.18  Aligned_cols=85  Identities=21%  Similarity=0.204  Sum_probs=59.5

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCC
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNL  220 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~  220 (463)
                      .+| .+..+++|++|+|+++.+. .+.+..+++|+.|+|++..++.  +.. +.. +.|+.|++.++. +..+.--..++
T Consensus        55 ~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~--l~~-~~~-~~L~~L~L~~N~-l~~~~~l~~l~  128 (263)
T 1xeu_A           55 SLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN--LNG-IPS-ACLSRLFLDNNE-LRDTDSLIHLK  128 (263)
T ss_dssp             CCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC--CTT-CCC-SSCCEEECCSSC-CSBSGGGTTCT
T ss_pred             cch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC--cCc-ccc-CcccEEEccCCc-cCCChhhcCcc
Confidence            345 4567789999999988775 2337789999999999887643  111 122 889999999885 44443334466


Q ss_pred             CccEEEEecCCC
Q 047476          221 RLKRLVIDKCDF  232 (463)
Q Consensus       221 ~L~~L~i~~c~~  232 (463)
                      +|+.|.++++.+
T Consensus       129 ~L~~L~Ls~N~i  140 (263)
T 1xeu_A          129 NLEILSIRNNKL  140 (263)
T ss_dssp             TCCEEECTTSCC
T ss_pred             cccEEECCCCcC
Confidence            888888888763

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.57  E-value=0.00024  Score=72.10  Aligned_cols=89  Identities=18%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             CceeEEEeeeeeeCC-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEec
Q 047476          151 VGLESLELFSCNINA-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDK  229 (463)
Q Consensus       151 ~~L~~L~L~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~  229 (463)
                      ++|++|+|++|.+.. +.+..  +|+.|+|++..++.  +..   .++.|+.|++.++. +..+.  ...++|+.|.+++
T Consensus       100 ~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l~~--lp~---~l~~L~~L~Ls~N~-l~~lp--~~l~~L~~L~Ls~  169 (571)
T 3cvr_A          100 ASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQLTM--LPE---LPALLEYINADNNQ-LTMLP--ELPTSLEVLSVRN  169 (571)
T ss_dssp             TTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CSCCC--CCCTTCCEEECCS
T ss_pred             CCCCEEEccCCCCCCcchhhc--CCCEEECCCCcCCC--CCC---cCccccEEeCCCCc-cCcCC--CcCCCcCEEECCC
Confidence            455555555554431 11211  55555555554422  111   45555555555553 22211  1233555555555


Q ss_pred             CCCC-ceeEEEECCCceEEEEecc
Q 047476          230 CDFN-QYRYEIAAPNLRFWKYSGT  252 (463)
Q Consensus       230 c~~~-~~~~~i~aP~L~~l~~~g~  252 (463)
                      |.+. +..  +. ++|+.|.++++
T Consensus       170 N~L~~lp~--l~-~~L~~L~Ls~N  190 (571)
T 3cvr_A          170 NQLTFLPE--LP-ESLEALDVSTN  190 (571)
T ss_dssp             SCCSCCCC--CC-TTCCEEECCSS
T ss_pred             CCCCCcch--hh-CCCCEEECcCC
Confidence            5431 111  11 55555555554

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.53  E-value=2.1e-05  Score=77.77  Aligned_cols=40  Identities=23%  Similarity=0.451  Sum_probs=36.9

Q ss_pred             ccccccCCchHHHHHHHhcCCchhHHhhhccccchhhhhe
Q 047476            6 DVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWL   45 (463)
Q Consensus         6 ~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw~   45 (463)
                      ..|.|+.||+|++.+||++||.+|+++++.|||+|+++-.
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~   50 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   50 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999997643

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.50  E-value=5e-05  Score=68.73  Aligned_cols=103  Identities=20%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCC
Q 047476          146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNL  220 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~  220 (463)
                      .+..+++|++|+|+++.+.   +..+..+++|++|+|++..++.-. ...+.+++.|+.|++.++. +..+.-  -..++
T Consensus        54 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  131 (251)
T 3m19_A           54 TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLT  131 (251)
T ss_dssp             TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCCc-CCCcChhHhccCC
Confidence            4556789999999988764   334678999999999987764211 2345678999999999875 343321  23456


Q ss_pred             CccEEEEecCCCCceeEE---E-ECCCceEEEEecc
Q 047476          221 RLKRLVIDKCDFNQYRYE---I-AAPNLRFWKYSGT  252 (463)
Q Consensus       221 ~L~~L~i~~c~~~~~~~~---i-~aP~L~~l~~~g~  252 (463)
                      +|+.|.+.++.+  ..+.   + ..++|+.|.+++.
T Consensus       132 ~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A          132 KLKELRLNTNQL--QSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             TCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccEEECcCCcC--CccCHHHcCcCcCCCEEECCCC
Confidence            888888888763  2221   1 2356666666554

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.47  E-value=1.4e-06  Score=76.01  Aligned_cols=83  Identities=23%  Similarity=0.178  Sum_probs=43.8

Q ss_pred             CccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccE
Q 047476          146 HVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKR  224 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~  224 (463)
                      .+..+++|++|+|+++.+. .+.+..+++|+.|+|++..++  .+...+..+|.|+.|++.++. +..+.--..+++|+.
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~-l~~l~~~~~l~~L~~  119 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQ-IASLSGIEKLVNLRV  119 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEE-CCCHHHHHHHHHSSE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCc-CCcCCccccCCCCCE
Confidence            4445566666666666554 224445666666666666554  233344455666666666653 222211112335555


Q ss_pred             EEEecCC
Q 047476          225 LVIDKCD  231 (463)
Q Consensus       225 L~i~~c~  231 (463)
                      |.+.++.
T Consensus       120 L~l~~N~  126 (198)
T 1ds9_A          120 LYMSNNK  126 (198)
T ss_dssp             EEESEEE
T ss_pred             EECCCCc
Confidence            5555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.46  E-value=6e-05  Score=67.25  Aligned_cols=89  Identities=24%  Similarity=0.227  Sum_probs=62.5

Q ss_pred             ceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--
Q 047476          140 VFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--  214 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--  214 (463)
                      ...+|..+.  ++|++|+|+++.+.   +..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.++. +..+.  
T Consensus        31 l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~-l~~l~~~  106 (229)
T 3e6j_A           31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ-LTVLPSA  106 (229)
T ss_dssp             CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred             cCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-CCccChh
Confidence            345665443  68999999998765   345678999999999988763211 1345788999999999875 44332  


Q ss_pred             cccCCCCccEEEEecCCC
Q 047476          215 ITVPNLRLKRLVIDKCDF  232 (463)
Q Consensus       215 i~~~~~~L~~L~i~~c~~  232 (463)
                      +-..+++|+.|.+.++.+
T Consensus       107 ~~~~l~~L~~L~Ls~N~l  124 (229)
T 3e6j_A          107 VFDRLVHLKELFMCCNKL  124 (229)
T ss_dssp             TTTTCTTCCEEECCSSCC
T ss_pred             HhCcchhhCeEeccCCcc
Confidence            123466888888888763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.41  E-value=0.0002  Score=68.45  Aligned_cols=153  Identities=17%  Similarity=0.048  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhcCCCCccEEEEEEeCCc-ch--h-HHHHHHHHH-hCCCeEEEEeecCCCCCCCCCCCC-ccceeCCcCc
Q 047476           74 FINFVHQWIGQYNATIVKAFRLVFSRPV-NF--L-VQNCISFAI-ARDVKELALDFHDPLWPEHGSENH-EAVFDLPMHV  147 (463)
Q Consensus        74 ~~~~v~~~L~~~~~~~l~~l~l~~~~~~-~~--~-i~~wl~~~~-~~~v~~L~l~~~~~~~~~~~~~~~-~~~~~lp~~l  147 (463)
                      +.+.+.++|.......|+.+.+...... +.  . +..++..+- -.++++|.+......  .  .... .....++..+
T Consensus        93 ~~~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e--~--~~is~~~~~~L~~ll  168 (362)
T 2ra8_A           93 GVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFE--E--QEISWIEQVDLSPVL  168 (362)
T ss_dssp             TCCHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTT--T--CCGGGCBCCBCHHHH
T ss_pred             HHHHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchh--h--cccccccccCHHHHH
Confidence            4445566665554445777776633221 11  1 333333221 258888877421100  0  0000 0011244445


Q ss_pred             cCCCceeEEEeeeee-eCCCCCCCCCccceEEeccEeechhHHHHHHh-cCCCceEEeecccCC-------Cceee--cc
Q 047476          148 YGHVGLESLELFSCN-INASRFNNFIALKELSLGWIQLSVQSIRELLV-QCPFLESLSLKKCWE-------IEYLD--IT  216 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls-~cp~Le~L~l~~c~~-------~~~~~--i~  216 (463)
                      ..+++|++|.|.++. +..+.+ ..++|++|.|..+.++...+..+.. .+|.|+.|+|..+..       +..+.  +.
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             hcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            567899999998873 333333 4899999999988888888877764 799999999864211       11111  11


Q ss_pred             -cCCCCccEEEEecCC
Q 047476          217 -VPNLRLKRLVIDKCD  231 (463)
Q Consensus       217 -~~~~~L~~L~i~~c~  231 (463)
                       ..+|+|+.|.+.+|.
T Consensus       248 ~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             TTTCTTCCEEEEESCT
T ss_pred             cCCCCCcCEEeCCCCC
Confidence             234577777776665

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.37  E-value=0.00011  Score=65.02  Aligned_cols=87  Identities=18%  Similarity=0.201  Sum_probs=59.6

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--c
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--I  215 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i  215 (463)
                      ..+|..+.  ++|++|+|.++.+.   +..+..+++|+.|+|++..++.- ....+.+++.|+.|+|.++. +..+.  +
T Consensus        24 ~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~   99 (220)
T 2v9t_B           24 TEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNK-ITELPKSL   99 (220)
T ss_dssp             SSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSC-CCCCCTTT
T ss_pred             CcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCc-CCccCHhH
Confidence            34665544  58999999988664   34677899999999998765321 12235678999999999875 33332  1


Q ss_pred             ccCCCCccEEEEecCC
Q 047476          216 TVPNLRLKRLVIDKCD  231 (463)
Q Consensus       216 ~~~~~~L~~L~i~~c~  231 (463)
                      -..+++|+.|.+.++.
T Consensus       100 f~~l~~L~~L~L~~N~  115 (220)
T 2v9t_B          100 FEGLFSLQLLLLNANK  115 (220)
T ss_dssp             TTTCTTCCEEECCSSC
T ss_pred             ccCCCCCCEEECCCCC
Confidence            2345688888888776

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.32  E-value=0.00014  Score=63.53  Aligned_cols=86  Identities=19%  Similarity=0.208  Sum_probs=57.5

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--c
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--T  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~  216 (463)
                      .+|..+.  ++|++|+|.++.+.   +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.-  -
T Consensus        21 ~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~   96 (208)
T 2o6s_A           21 SVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPNGVF   96 (208)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             CCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCc-CCccCHhHh
Confidence            4554433  47899999988765   23356789999999988766421 12335678999999998875 333321  2


Q ss_pred             cCCCCccEEEEecCC
Q 047476          217 VPNLRLKRLVIDKCD  231 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~  231 (463)
                      ..+++|+.|.+.++.
T Consensus        97 ~~l~~L~~L~L~~N~  111 (208)
T 2o6s_A           97 DKLTQLKELALNTNQ  111 (208)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCccCCCEEEcCCCc
Confidence            345688888887775

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.31  E-value=9.7e-05  Score=72.68  Aligned_cols=40  Identities=25%  Similarity=0.424  Sum_probs=36.7

Q ss_pred             CCccccccCCchHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476            4 NDDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI   43 (463)
Q Consensus         4 ~~~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~l   43 (463)
                      .-..|.|+.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        13 ~~~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           13 QFQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cccCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            3457999999999999999999999999999999999863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.27  E-value=7.2e-05  Score=73.47  Aligned_cols=38  Identities=21%  Similarity=0.430  Sum_probs=35.8

Q ss_pred             CccccccCCchH----HHHHHHhcCCchhHHhhhccccchhh
Q 047476            5 DDVDMFSKLTND----LVTVIISYLPFKEAARTSILSRRWRH   42 (463)
Q Consensus         5 ~~~D~is~LPd~----lL~~ILs~Lp~~d~~rts~lSrrWr~   42 (463)
                      -..|.|+.||+|    |+.+||++|+.+|+++++.|||+|+.
T Consensus         6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~   47 (435)
T 1p22_A            6 LQRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYR   47 (435)
T ss_dssp             SCCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHH
T ss_pred             hhcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence            457999999999    99999999999999999999999994

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.17  E-value=0.00013  Score=61.99  Aligned_cols=79  Identities=18%  Similarity=0.076  Sum_probs=49.4

Q ss_pred             CceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee---cccCCCCccEEE
Q 047476          151 VGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD---ITVPNLRLKRLV  226 (463)
Q Consensus       151 ~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~---i~~~~~~L~~L~  226 (463)
                      ++|++|+|+++.+. .+.+..+++|++|+|++..++.- -..++.++|.|+.|++.++. +..+.   .-..+++|+.|.
T Consensus        42 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             TCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCCCCcccccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEE
Confidence            37888888877654 24566778888888887765421 11234677888888888775 23222   123355777777


Q ss_pred             EecCC
Q 047476          227 IDKCD  231 (463)
Q Consensus       227 i~~c~  231 (463)
                      +.+++
T Consensus       120 l~~N~  124 (176)
T 1a9n_A          120 ILRNP  124 (176)
T ss_dssp             CCSSG
T ss_pred             ecCCC
Confidence            77665

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.12  E-value=0.0033  Score=64.57  Aligned_cols=124  Identities=19%  Similarity=0.205  Sum_probs=82.8

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCc-CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPM-HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIR  190 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~-~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~  190 (463)
                      ..+++|+|....             ...+|. .+.++++|++|+|++|.+.   +..|.++++|++|+|++..++.-. .
T Consensus        52 ~~~~~LdLs~N~-------------i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~  117 (635)
T 4g8a_A           52 FSTKNLDLSFNP-------------LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-L  117 (635)
T ss_dssp             TTCCEEECTTSC-------------CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-G
T ss_pred             cCCCEEEeeCCC-------------CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-H
Confidence            457777775321             224554 4567889999999998654   456788999999999987653211 1


Q ss_pred             HHHhcCCCceEEeecccCCCceee--cccCCCCccEEEEecCCCCce---eEEEECCCceEEEEeccc
Q 047476          191 ELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLKRLVIDKCDFNQY---RYEIAAPNLRFWKYSGTE  253 (463)
Q Consensus       191 ~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~~L~i~~c~~~~~---~~~i~aP~L~~l~~~g~~  253 (463)
                      ..+.+++.|+.|++.++. +..+.  .-..+++|+.|.+.++.+...   ...-..++|++|.+++..
T Consensus       118 ~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          118 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             GGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             HHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            246789999999999885 33332  124467999999998864211   111125788888887653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.05  E-value=0.00036  Score=61.65  Aligned_cols=85  Identities=18%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCC
Q 047476          146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNL  220 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~  220 (463)
                      .+..+++|++|+|+++.+.   +..+.++++|++|+|++..++.- -..++.+++.|+.|.|.++. +..+.  .-..++
T Consensus        51 ~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~  128 (220)
T 2v9t_B           51 AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLH  128 (220)
T ss_dssp             SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred             HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCC
Confidence            4456789999999988654   56788899999999998876421 12335688999999999875 33331  123356


Q ss_pred             CccEEEEecCCC
Q 047476          221 RLKRLVIDKCDF  232 (463)
Q Consensus       221 ~L~~L~i~~c~~  232 (463)
                      +|+.|.+.++.+
T Consensus       129 ~L~~L~L~~N~l  140 (220)
T 2v9t_B          129 NLNLLSLYDNKL  140 (220)
T ss_dssp             TCCEEECCSSCC
T ss_pred             CCCEEECCCCcC
Confidence            888888887763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.99  E-value=0.00019  Score=73.10  Aligned_cols=55  Identities=20%  Similarity=0.170  Sum_probs=27.4

Q ss_pred             ccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEEecCC
Q 047476          173 ALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       173 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i~~c~  231 (463)
                      .|+.|+|++..++.  +.. +.+++.|+.|++.++. +..+. .-..+++|+.|.++++.
T Consensus       442 ~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~  497 (567)
T 1dce_A          442 DVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA  497 (567)
T ss_dssp             TCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CceEEEecCCCCCC--CcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC
Confidence            36666666655432  222 5566666666666654 22221 11223455555555544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.90  E-value=0.00022  Score=60.58  Aligned_cols=82  Identities=11%  Similarity=0.078  Sum_probs=56.9

Q ss_pred             ccCCCceeEEEeeeeeeCC-CCCCCC-CccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCc
Q 047476          147 VYGHVGLESLELFSCNINA-SRFNNF-IALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRL  222 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~-~~~~~l-~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L  222 (463)
                      ...+.+|++|.|+++.+.. +.+..+ ++|+.|+|++..++.-   .-+.+++.|+.|++.++. +..+.  +...+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCCC
Confidence            3456789999999987752 344444 4899999998876432   345678899999998876 44332  12345688


Q ss_pred             cEEEEecCCC
Q 047476          223 KRLVIDKCDF  232 (463)
Q Consensus       223 ~~L~i~~c~~  232 (463)
                      +.|.++++.+
T Consensus        91 ~~L~L~~N~i  100 (176)
T 1a9n_A           91 TELILTNNSL  100 (176)
T ss_dssp             CEEECCSCCC
T ss_pred             CEEECCCCcC
Confidence            8888887763

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.90  E-value=0.0004  Score=61.76  Aligned_cols=86  Identities=22%  Similarity=0.178  Sum_probs=60.4

Q ss_pred             CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCC
Q 047476          144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPN  219 (463)
Q Consensus       144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~  219 (463)
                      |..+..+++|++|+|+++.+.   +..+..+++|+.|+|++..++.- ....+.+++.|+.|.+.++. +..+. -...+
T Consensus        57 ~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l  134 (229)
T 3e6j_A           57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKELFMCCNK-LTELPRGIERL  134 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCSCCTTGGGC
T ss_pred             HHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeEeccCCc-ccccCcccccC
Confidence            444567789999999998764   23457899999999998876421 12335688999999999876 33331 11345


Q ss_pred             CCccEEEEecCC
Q 047476          220 LRLKRLVIDKCD  231 (463)
Q Consensus       220 ~~L~~L~i~~c~  231 (463)
                      ++|+.|.+.++.
T Consensus       135 ~~L~~L~L~~N~  146 (229)
T 3e6j_A          135 THLTHLALDQNQ  146 (229)
T ss_dssp             TTCSEEECCSSC
T ss_pred             CCCCEEECCCCc
Confidence            688888887775

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.89  E-value=1.3e-05  Score=69.88  Aligned_cols=82  Identities=22%  Similarity=0.157  Sum_probs=50.8

Q ss_pred             CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCCCCccEEEEecCCCCceeEEEECCCce
Q 047476          167 RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPNLRLKRLVIDKCDFNQYRYEIAAPNLR  245 (463)
Q Consensus       167 ~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~  245 (463)
                      .+..+++|++|+|++..++.  +. .+.+++.|+.|++.++. +..+. ....+++|+.|.+.+|.+..-.-.-..++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCcCCcCCccccCCCCC
Confidence            34578899999999888754  33 56778999999999875 23221 1222358888888887632100001235566


Q ss_pred             EEEEecc
Q 047476          246 FWKYSGT  252 (463)
Q Consensus       246 ~l~~~g~  252 (463)
                      .|.++++
T Consensus       119 ~L~l~~N  125 (198)
T 1ds9_A          119 VLYMSNN  125 (198)
T ss_dssp             EEEESEE
T ss_pred             EEECCCC
Confidence            6665554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.89  E-value=0.00045  Score=60.33  Aligned_cols=83  Identities=20%  Similarity=0.132  Sum_probs=56.6

Q ss_pred             ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCC
Q 047476          147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLR  221 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~  221 (463)
                      +..+++|++|+|+++.+.   +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.-  -..+++
T Consensus        48 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  125 (208)
T 2o6s_A           48 FDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQ  125 (208)
T ss_dssp             TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred             hcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCc
Confidence            346788999999988764   22356789999999988766421 12235678999999998875 333321  233568


Q ss_pred             ccEEEEecCC
Q 047476          222 LKRLVIDKCD  231 (463)
Q Consensus       222 L~~L~i~~c~  231 (463)
                      |+.|.+.++.
T Consensus       126 L~~L~l~~N~  135 (208)
T 2o6s_A          126 LKDLRLYQNQ  135 (208)
T ss_dssp             CCEEECCSSC
T ss_pred             CCEEECCCCc
Confidence            8888888775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.81  E-value=0.00051  Score=69.92  Aligned_cols=85  Identities=16%  Similarity=0.076  Sum_probs=56.7

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---ecc
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DIT  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~  216 (463)
                      .+|. +..+++|+.|+|+++.+.  |..+..+++|+.|+|++..++.  +. -+.+++.|+.|+|.++. +..+   ..-
T Consensus       455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l  529 (567)
T 1dce_A          455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPL  529 (567)
T ss_dssp             SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGG
T ss_pred             CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHH
Confidence            3564 667778888888887765  3456678888888888876643  33 46778888888888775 2322   122


Q ss_pred             cCCCCccEEEEecCC
Q 047476          217 VPNLRLKRLVIDKCD  231 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~  231 (463)
                      ..+++|+.|.++++.
T Consensus       530 ~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          530 VSCPRLVLLNLQGNS  544 (567)
T ss_dssp             GGCTTCCEEECTTSG
T ss_pred             hcCCCCCEEEecCCc
Confidence            335577777777665

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.78  E-value=0.00098  Score=56.47  Aligned_cols=87  Identities=22%  Similarity=0.209  Sum_probs=57.7

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--c
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--T  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~  216 (463)
                      .+|..+.  ++|++|.|.++.+.   +..+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+.-  -
T Consensus        21 ~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~   96 (177)
T 2o6r_A           21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENK-LQSLPNGVF   96 (177)
T ss_dssp             SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCC-ccccCHHHh
Confidence            4554433  58899999988764   23456789999999998766421 12235678999999998875 333221  2


Q ss_pred             cCCCCccEEEEecCCC
Q 047476          217 VPNLRLKRLVIDKCDF  232 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~~  232 (463)
                      ..+++|+.|.+.++.+
T Consensus        97 ~~l~~L~~L~l~~N~l  112 (177)
T 2o6r_A           97 DKLTQLKELALDTNQL  112 (177)
T ss_dssp             TTCTTCCEEECCSSCC
T ss_pred             hCCcccCEEECcCCcc
Confidence            3356888888877763

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.78  E-value=0.00062  Score=60.15  Aligned_cols=86  Identities=14%  Similarity=0.163  Sum_probs=50.6

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---C-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--c
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---A-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--I  215 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i  215 (463)
                      .+|..+.  ..+++|+|+++.+.   + ..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.++. +..+.  .
T Consensus        25 ~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~  100 (220)
T 2v70_A           25 KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNR-LENVQHKM  100 (220)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGGG
T ss_pred             cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHhH
Confidence            4555443  35678888887654   2 23567888888888876553211 1234677888888888765 22221  1


Q ss_pred             ccCCCCccEEEEecCC
Q 047476          216 TVPNLRLKRLVIDKCD  231 (463)
Q Consensus       216 ~~~~~~L~~L~i~~c~  231 (463)
                      -..+++|+.|.++++.
T Consensus       101 ~~~l~~L~~L~Ls~N~  116 (220)
T 2v70_A          101 FKGLESLKTLMLRSNR  116 (220)
T ss_dssp             GTTCSSCCEEECTTSC
T ss_pred             hcCCcCCCEEECCCCc
Confidence            2234566666666554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.75  E-value=0.00032  Score=67.38  Aligned_cols=80  Identities=18%  Similarity=0.280  Sum_probs=43.5

Q ss_pred             CceeEEEeeeeeeCCC---CC-CCCCccceEEeccEeechhHHHH---HH-hcCCCceEEeecccCCCceee---cc---
Q 047476          151 VGLESLELFSCNINAS---RF-NNFIALKELSLGWIQLSVQSIRE---LL-VQCPFLESLSLKKCWEIEYLD---IT---  216 (463)
Q Consensus       151 ~~L~~L~L~~~~~~~~---~~-~~l~~L~~L~L~~~~~~~~~l~~---ll-s~cp~Le~L~l~~c~~~~~~~---i~---  216 (463)
                      .+|++|+|++|.+...   .+ ..+++|+.|+|+++.+++.+...   .+ ..++.|++|+|.+|. ++...   +.   
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L  179 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGL  179 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHH
Confidence            4677777777665421   11 13566777777777665544333   23 346777777777764 32211   10   


Q ss_pred             cCCCCccEEEEecCC
Q 047476          217 VPNLRLKRLVIDKCD  231 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~  231 (463)
                      ..+++|++|++++|.
T Consensus       180 ~~~~~L~~L~Ls~N~  194 (372)
T 3un9_A          180 AGNTSVTHLSLLHTG  194 (372)
T ss_dssp             HTCSSCCEEECTTSS
T ss_pred             hcCCCcCEEeCCCCC
Confidence            223456666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.72  E-value=0.00082  Score=58.02  Aligned_cols=86  Identities=17%  Similarity=0.131  Sum_probs=52.6

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--ccc
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITV  217 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~  217 (463)
                      .+|..++  ++|++|.|+++.+.  +..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.++. +..+.  .-.
T Consensus        24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~   99 (193)
T 2wfh_A           24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNR-LRCIPPRTFD   99 (193)
T ss_dssp             SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTTT
T ss_pred             cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCc-cCEeCHHHhC
Confidence            4554433  47888888877664  345567788888888877653211 1234577888888888765 33322  122


Q ss_pred             CCCCccEEEEecCC
Q 047476          218 PNLRLKRLVIDKCD  231 (463)
Q Consensus       218 ~~~~L~~L~i~~c~  231 (463)
                      .+++|+.|.+.++.
T Consensus       100 ~l~~L~~L~L~~N~  113 (193)
T 2wfh_A          100 GLKSLRLLSLHGND  113 (193)
T ss_dssp             TCTTCCEEECCSSC
T ss_pred             CCCCCCEEECCCCC
Confidence            34577777777665

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.72  E-value=0.0017  Score=61.96  Aligned_cols=81  Identities=23%  Similarity=0.177  Sum_probs=39.2

Q ss_pred             CCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCCcc
Q 047476          149 GHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLRLK  223 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~L~  223 (463)
                      .+++|++|+|+++.+.   +..+..+++|+.|+|++..++.- ....+.+++.|+.|+|.++. +..+.  .-..+++|+
T Consensus        62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~  139 (361)
T 2xot_A           62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQ  139 (361)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred             cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCC
Confidence            4456666666655442   23455566666666665543210 01123455666666666554 22221  112234566


Q ss_pred             EEEEecCC
Q 047476          224 RLVIDKCD  231 (463)
Q Consensus       224 ~L~i~~c~  231 (463)
                      .|.+.++.
T Consensus       140 ~L~L~~N~  147 (361)
T 2xot_A          140 KLYLSQNQ  147 (361)
T ss_dssp             EEECCSSC
T ss_pred             EEECCCCc
Confidence            66665554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.70  E-value=0.00076  Score=59.56  Aligned_cols=83  Identities=13%  Similarity=0.117  Sum_probs=60.4

Q ss_pred             ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCC
Q 047476          147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLR  221 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~  221 (463)
                      +..+++|++|+|+++.+.   +..+..+++|++|+|++..++.-. ...+.+++.|+.|.+.++. +..+.  .-..+++
T Consensus        53 ~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~  130 (220)
T 2v70_A           53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSS  130 (220)
T ss_dssp             GGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTT
T ss_pred             hccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCEEECCCCc-CCeECHhHcCCCcc
Confidence            456789999999998764   446788999999999988763211 2245789999999999886 33321  1233568


Q ss_pred             ccEEEEecCC
Q 047476          222 LKRLVIDKCD  231 (463)
Q Consensus       222 L~~L~i~~c~  231 (463)
                      |+.|.+.++.
T Consensus       131 L~~L~L~~N~  140 (220)
T 2v70_A          131 VRLLSLYDNQ  140 (220)
T ss_dssp             CSEEECTTSC
T ss_pred             CCEEECCCCc
Confidence            8888888776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.68  E-value=0.0012  Score=56.85  Aligned_cols=86  Identities=19%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC--CC--CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN--AS--RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--  215 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~--~~--~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--  215 (463)
                      .+|..++.  +|++|.|.++.+.  ++  .+..+++|++|+|++..++.- ....+.+++.|+.|++.++. +..+..  
T Consensus        22 ~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~   97 (192)
T 1w8a_A           22 EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEISNKM   97 (192)
T ss_dssp             SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEECSSS
T ss_pred             cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc-CCccCHHH
Confidence            46655443  8999999988764  22  266899999999998866421 12335678999999999876 333321  


Q ss_pred             ccCCCCccEEEEecCC
Q 047476          216 TVPNLRLKRLVIDKCD  231 (463)
Q Consensus       216 ~~~~~~L~~L~i~~c~  231 (463)
                      -..+++|+.|.+.++.
T Consensus        98 ~~~l~~L~~L~L~~N~  113 (192)
T 1w8a_A           98 FLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             STTCTTCCEEECCSSC
T ss_pred             hcCCCCCCEEECCCCc
Confidence            2335678888887776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.63  E-value=0.0056  Score=57.52  Aligned_cols=97  Identities=11%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             CCCceEEEEeccc-ce---eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce-EEEEeccccccccCCCCCC
Q 047476          241 APNLRFWKYSGTE-GM---FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR-VLTVCSFLLQVIPHAEEPF  315 (463)
Q Consensus       241 aP~L~~l~~~g~~-~~---~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~-~L~l~~~~~~~~~~~~~~~  315 (463)
                      +++|+++.+.+.. ..   ..+.++++|+++.+.-.... ..       ...+.++++++ .+.+.. .++.+....   
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~ni~~-I~-------~~aF~~~~~L~~~l~l~~-~l~~I~~~a---  292 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT-IG-------QRVFSNCGRLAGTLELPA-SVTAIEFGA---  292 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTTCCE-EC-------TTTTTTCTTCCEEEEECT-TCCEECTTT---
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcccce-eh-------HHHhhCChhccEEEEEcc-cceEEchhh---
Confidence            5788888887642 22   23566778888877521100 00       02356788888 898865 343333211   


Q ss_pred             CCCCCC-ceeEEEEecCCCCchhhHH-HHhhhcCCCcceEEE
Q 047476          316 GMTVPL-EVKHLTLNAGMHPHEYYGI-NFMLKSCPSLQTLTI  355 (463)
Q Consensus       316 ~~~~~~-~L~~L~l~~~~~~~~~~~l-~~lL~~~P~L~~L~l  355 (463)
                        |... +|+.+.+...-    +..+ ...+..|++|++++.
T Consensus       293 --F~~c~~L~~l~l~~n~----i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          293 --FMGCDNLRYVLATGDK----ITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             --TTTCTTEEEEEECSSC----CCEECTTTTCTTCCCCEEEC
T ss_pred             --hhCCccCCEEEeCCCc----cCccchhhhcCCcchhhhcc
Confidence              1111 68888874221    1111 124678999998863

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.61  E-value=0.0027  Score=54.64  Aligned_cols=88  Identities=20%  Similarity=0.135  Sum_probs=62.3

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--c
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--T  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~  216 (463)
                      .+|..+..+++|++|+|+++.+.   +..+.++++|++|+|++..++.-. ...+.+++.|+.|+|.++. +..+..  -
T Consensus        45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~L~~N~-l~~~~~~~~  122 (193)
T 2wfh_A           45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLLSLHGND-ISVVPEGAF  122 (193)
T ss_dssp             SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSC-CCBCCTTTT
T ss_pred             hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEEECCCCC-CCeeChhhh
Confidence            56666778889999999999765   345788999999999988764211 1235688999999999876 333321  2


Q ss_pred             cCCCCccEEEEecCC
Q 047476          217 VPNLRLKRLVIDKCD  231 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~  231 (463)
                      ..+++|+.|.+.+.+
T Consensus       123 ~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          123 NDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             hcCccccEEEeCCCC
Confidence            234567777666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.45  E-value=0.00075  Score=70.90  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccC
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVP  218 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~  218 (463)
                      .+|..++.+++|++|+|+++.+.  |..+..+++|+.|+|++..++  .+..-+.+++.|+.|.|.++. ++.+. --..
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~  314 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNM-VTTLPWEFGN  314 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSC-CCCCCSSTTS
T ss_pred             CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCC-CCccChhhhc
Confidence            56666667777777777777654  334556777777777776654  233335667777777777764 33321 1223


Q ss_pred             CCCccEEEEecCCC
Q 047476          219 NLRLKRLVIDKCDF  232 (463)
Q Consensus       219 ~~~L~~L~i~~c~~  232 (463)
                      +++|+.|.+.++.+
T Consensus       315 l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          315 LCNLQFLGVEGNPL  328 (727)
T ss_dssp             CTTCCCEECTTSCC
T ss_pred             CCCccEEeCCCCcc
Confidence            55777777776654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.45  E-value=0.0029  Score=53.24  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=57.2

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cc
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--IT  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~  216 (463)
                      .+|..+.  ++|++|+|+++.+.   +..+..+++|++|+|++..++.- -...+.+++.|+.|+|.+.. +..+.  .-
T Consensus        23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~   98 (170)
T 3g39_A           23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRGAF   98 (170)
T ss_dssp             SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTT
T ss_pred             ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHHHh
Confidence            4665543  68999999988764   34577899999999998876421 12235678899999998875 33332  12


Q ss_pred             cCCCCccEEEEecCC
Q 047476          217 VPNLRLKRLVIDKCD  231 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~  231 (463)
                      ..+++|+.|.+.+.+
T Consensus        99 ~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           99 DNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCCCCCEEEeCCCC
Confidence            234567777666654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.44  E-value=0.0029  Score=53.44  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=55.7

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--  215 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--  215 (463)
                      ..+|..+.  ++|++|+|+++.+.   +..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.+.. +..+.-  
T Consensus        25 ~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~  100 (174)
T 2r9u_A           25 ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPRGA  100 (174)
T ss_dssp             SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTT
T ss_pred             CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc-cceeCHHH
Confidence            34665554  68899999988764   345678899999999887664210 1234678888888888764 333221  


Q ss_pred             ccCCCCccEEEEecCC
Q 047476          216 TVPNLRLKRLVIDKCD  231 (463)
Q Consensus       216 ~~~~~~L~~L~i~~c~  231 (463)
                      -..+++|+.|.+.+++
T Consensus       101 ~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A          101 FDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTCTTCSEEECCSSC
T ss_pred             hccccCCCEEEeCCCC
Confidence            2234466666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.42  E-value=0.0036  Score=59.76  Aligned_cols=106  Identities=21%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC---CCCCC-CCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN---ASRFN-NFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--  214 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~-~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--  214 (463)
                      ..+|..+.  ..++.|+|+++.+.   +..+. .+++|+.|+|++..++.-. ...+.+++.|+.|+|.++. +..+.  
T Consensus        31 ~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~  106 (361)
T 2xot_A           31 PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH-LHTLDEF  106 (361)
T ss_dssp             SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred             CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc-CCcCCHH
Confidence            34666544  36899999998764   34455 8999999999987664211 1235688999999999876 44442  


Q ss_pred             cccCCCCccEEEEecCCCCceeEE----EECCCceEEEEecc
Q 047476          215 ITVPNLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGT  252 (463)
Q Consensus       215 i~~~~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~  252 (463)
                      .-..+++|+.|.+.++.+  ..+.    -..++|+.|.++++
T Consensus       107 ~~~~l~~L~~L~L~~N~i--~~~~~~~~~~l~~L~~L~L~~N  146 (361)
T 2xot_A          107 LFSDLQALEVLLLYNNHI--VVVDRNAFEDMAQLQKLYLSQN  146 (361)
T ss_dssp             TTTTCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSS
T ss_pred             HhCCCcCCCEEECCCCcc--cEECHHHhCCcccCCEEECCCC
Confidence            223467899999988863  2221    12466777766654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.36  E-value=0.00061  Score=71.58  Aligned_cols=106  Identities=17%  Similarity=0.103  Sum_probs=69.4

Q ss_pred             CCcCccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-cccCC
Q 047476          143 LPMHVYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-ITVPN  219 (463)
Q Consensus       143 lp~~l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-i~~~~  219 (463)
                      .|..+..+..|+.|+|+++.+.  +..+..+++|++|+|++..++  .+..-+.+++.|+.|+|.++. +..+. --..+
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l  292 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSC  292 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGG
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CCccChhhcCC
Confidence            3445566778999999988765  334557899999999988765  333446788999999999886 33331 12345


Q ss_pred             CCccEEEEecCCCCceeEE--E-ECCCceEEEEeccc
Q 047476          220 LRLKRLVIDKCDFNQYRYE--I-AAPNLRFWKYSGTE  253 (463)
Q Consensus       220 ~~L~~L~i~~c~~~~~~~~--i-~aP~L~~l~~~g~~  253 (463)
                      ++|+.|.+.++.+  ..+.  + ..++|+.|.++++.
T Consensus       293 ~~L~~L~L~~N~l--~~lp~~~~~l~~L~~L~L~~N~  327 (727)
T 4b8c_D          293 FQLKYFYFFDNMV--TTLPWEFGNLCNLQFLGVEGNP  327 (727)
T ss_dssp             TTCSEEECCSSCC--CCCCSSTTSCTTCCCEECTTSC
T ss_pred             CCCCEEECCCCCC--CccChhhhcCCCccEEeCCCCc
Confidence            6899999988864  2221  1 24677777776653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.29  E-value=0.0057  Score=52.24  Aligned_cols=60  Identities=20%  Similarity=0.211  Sum_probs=31.3

Q ss_pred             CCCceeEEEeeee-eeCCC-------CCCCCCccceEEeccEeechhH---HHHHHhcCCCceEEeecccC
Q 047476          149 GHVGLESLELFSC-NINAS-------RFNNFIALKELSLGWIQLSVQS---IRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       149 ~~~~L~~L~L~~~-~~~~~-------~~~~l~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l~~c~  208 (463)
                      .+++|++|+|++| .+.+.       .+...+.|++|+|+++.+++.+   +...+..++.|++|+|.++.
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3445555655555 44321       1123455666666666654433   34445556666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.27  E-value=0.0037  Score=52.83  Aligned_cols=87  Identities=17%  Similarity=0.119  Sum_probs=60.1

Q ss_pred             CCcC-ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--c
Q 047476          143 LPMH-VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--T  216 (463)
Q Consensus       143 lp~~-l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~  216 (463)
                      +|.. +..+++|++|+|+++.+.   +..+..+++|+.|+|++..++.- ....+.+++.|+.|++.++. +..+..  -
T Consensus        43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~  120 (177)
T 2o6r_A           43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKELALDTNQ-LKSVPDGIF  120 (177)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred             eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCEEECcCCc-ceEeCHHHh
Confidence            4443 346789999999998775   23457899999999998876421 12245688999999999875 343321  2


Q ss_pred             cCCCCccEEEEecCC
Q 047476          217 VPNLRLKRLVIDKCD  231 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~  231 (463)
                      ..+++|+.|.+.+++
T Consensus       121 ~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          121 DRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTCTTCCEEECCSSC
T ss_pred             cCCcccCEEEecCCC
Confidence            334577777777665

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.22  E-value=0.0044  Score=53.21  Aligned_cols=83  Identities=19%  Similarity=0.128  Sum_probs=58.5

Q ss_pred             ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--cccCCCC
Q 047476          147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--ITVPNLR  221 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i~~~~~~  221 (463)
                      +...++|++|+|+++.+.   +..+..+++|++|+|++..++.-. ...+.+.+.|+.|++.++. +..+.  .-..+++
T Consensus        50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~  127 (192)
T 1w8a_A           50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNS  127 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTT
T ss_pred             cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCC
Confidence            556789999999999764   456788999999999998764311 1235678999999999886 33321  1223456


Q ss_pred             ccEEEEecCC
Q 047476          222 LKRLVIDKCD  231 (463)
Q Consensus       222 L~~L~i~~c~  231 (463)
                      |+.|.+.+++
T Consensus       128 L~~L~L~~N~  137 (192)
T 1w8a_A          128 LTSLNLASNP  137 (192)
T ss_dssp             CCEEECTTCC
T ss_pred             CCEEEeCCCC
Confidence            7777776655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.51  E-value=0.009  Score=56.46  Aligned_cols=89  Identities=21%  Similarity=0.200  Sum_probs=61.9

Q ss_pred             eeCCcCccCCCceeEEEeee-eeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec-
Q 047476          141 FDLPMHVYGHVGLESLELFS-CNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI-  215 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~-~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i-  215 (463)
                      ..+|. +....+|++|+|++ +.+.   +..+.++++|+.|+|++..++.- ....+.+++.|+.|+|.+.. +..+.- 
T Consensus        22 ~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~   98 (347)
T 2ifg_A           22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFNA-LESLSWK   98 (347)
T ss_dssp             TTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSSC-CSCCCST
T ss_pred             CccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCCc-cceeCHH
Confidence            35787 77888999999986 7654   34678899999999998876431 12245789999999999875 333321 


Q ss_pred             ccCCCCccEEEEecCCC
Q 047476          216 TVPNLRLKRLVIDKCDF  232 (463)
Q Consensus       216 ~~~~~~L~~L~i~~c~~  232 (463)
                      ......|+.|.+.++.+
T Consensus        99 ~~~~~~L~~l~l~~N~~  115 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNPL  115 (347)
T ss_dssp             TTCSCCCCEEECCSSCC
T ss_pred             HcccCCceEEEeeCCCc
Confidence            11112488888876653

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=95.28  E-value=0.0097  Score=50.75  Aligned_cols=82  Identities=13%  Similarity=0.028  Sum_probs=40.8

Q ss_pred             CCCceeEEEeeeeeeCCCC-------CCCCCccceEEeccEeechhH---HHHHHhcCCCceEEee--cccCCCceee--
Q 047476          149 GHVGLESLELFSCNINASR-------FNNFIALKELSLGWIQLSVQS---IRELLVQCPFLESLSL--KKCWEIEYLD--  214 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~~~~-------~~~l~~L~~L~L~~~~~~~~~---l~~lls~cp~Le~L~l--~~c~~~~~~~--  214 (463)
                      .+++|++|+|++|.+....       +...+.|++|+|++..+++.+   +...+..++.|+.|+|  .++. ++...  
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~  141 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEM  141 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHH
Confidence            3455666666666554221       113455666666666665544   3333445666666666  3332 22211  


Q ss_pred             ----cccCCCCccEEEEecCC
Q 047476          215 ----ITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       215 ----i~~~~~~L~~L~i~~c~  231 (463)
                          .-...++|++|.+.+|.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHhCCCcCEEeccCCC
Confidence                11123466666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=94.98  E-value=0.032  Score=52.26  Aligned_cols=82  Identities=12%  Similarity=0.056  Sum_probs=50.3

Q ss_pred             CCCccEEEEecCCCCceeEE----EECCCceEEEEeccccee---eeecCCCcc-EEEEeeecCCCCchhHHHHHHHHhh
Q 047476          219 NLRLKRLVIDKCDFNQYRYE----IAAPNLRFWKYSGTEGMF---RVERQNFLT-EVELDFALQPDFDEEIGEFLYELLR  290 (463)
Q Consensus       219 ~~~L~~L~i~~c~~~~~~~~----i~aP~L~~l~~~g~~~~~---~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~ll~  290 (463)
                      +++|+.|++.++.  ...+.    -.+++|+++.+.+....+   .+.++++|+ .+.+.-.... ..       ...+.
T Consensus       225 ~~~L~~l~L~~n~--i~~I~~~aF~~~~~L~~l~l~~ni~~I~~~aF~~~~~L~~~l~l~~~l~~-I~-------~~aF~  294 (329)
T 3sb4_A          225 MPNLVSLDISKTN--ATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTA-IE-------FGAFM  294 (329)
T ss_dssp             CTTCCEEECTTBC--CCEECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEEEECTTCCE-EC-------TTTTT
T ss_pred             cCCCeEEECCCCC--cceecHhhhhCCCCCCEEECCcccceehHHHhhCChhccEEEEEcccceE-Ec-------hhhhh
Confidence            5688888887654  22332    125788888877653332   356778888 8877531110 00       02356


Q ss_pred             cCccceEEEEeccccccccC
Q 047476          291 QLEIVRVLTVCSFLLQVIPH  310 (463)
Q Consensus       291 ~l~~l~~L~l~~~~~~~~~~  310 (463)
                      +|++++.+.+.+..++.++.
T Consensus       295 ~c~~L~~l~l~~n~i~~I~~  314 (329)
T 3sb4_A          295 GCDNLRYVLATGDKITTLGD  314 (329)
T ss_dssp             TCTTEEEEEECSSCCCEECT
T ss_pred             CCccCCEEEeCCCccCccch
Confidence            79999999997766665543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=94.96  E-value=0.025  Score=53.55  Aligned_cols=110  Identities=13%  Similarity=0.180  Sum_probs=70.4

Q ss_pred             ceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--
Q 047476          140 VFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--  214 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--  214 (463)
                      ...+|..+.  +++++|+|+++.+.   +..|.++++|++|+|++..+...-=...+.+++.|.++.+..+..+..+.  
T Consensus        21 Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~   98 (350)
T 4ay9_X           21 VTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPE   98 (350)
T ss_dssp             CCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTT
T ss_pred             CCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCch
Confidence            345776553  57999999998764   34678999999999998754211001235678888887777776666653  


Q ss_pred             cccCCCCccEEEEecCCCCc--eeEEEECCCceEEEEec
Q 047476          215 ITVPNLRLKRLVIDKCDFNQ--YRYEIAAPNLRFWKYSG  251 (463)
Q Consensus       215 i~~~~~~L~~L~i~~c~~~~--~~~~i~aP~L~~l~~~g  251 (463)
                      .-..+++|+.|.+.++....  ........++..+.+.+
T Consensus        99 ~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~  137 (350)
T 4ay9_X           99 AFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD  137 (350)
T ss_dssp             SBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES
T ss_pred             hhhhccccccccccccccccCCchhhcccchhhhhhhcc
Confidence            23446689999998876311  01112344555666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.23  E-value=0.19  Score=48.43  Aligned_cols=12  Identities=33%  Similarity=0.362  Sum_probs=8.2

Q ss_pred             hhcCCCcceEEE
Q 047476          344 LKSCPSLQTLTI  355 (463)
Q Consensus       344 L~~~P~L~~L~l  355 (463)
                      +..|++|+++.|
T Consensus       319 F~~c~~L~~l~l  330 (401)
T 4fdw_A          319 LGGNRKVTQLTI  330 (401)
T ss_dssp             TTTCCSCCEEEE
T ss_pred             hcCCCCccEEEE
Confidence            456777777776

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=92.92  E-value=0.05  Score=45.66  Aligned_cols=64  Identities=20%  Similarity=0.134  Sum_probs=47.6

Q ss_pred             CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      |..+...++|+.|+|+++.+.   +..+..+++|+.|+|++..++.- -...+.+++.|+.|.+.+..
T Consensus        50 ~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred             HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCEEEeCCCC
Confidence            445567789999999999775   23357899999999998776421 11236678999999999764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=92.48  E-value=0.063  Score=44.83  Aligned_cols=64  Identities=23%  Similarity=0.158  Sum_probs=46.4

Q ss_pred             CcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          144 PMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       144 p~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      |..+...++|++|+|+++.+.   +..+..+++|+.|+|++..++.-. ...+.+++.|+.|+|.+..
T Consensus        47 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence            444556789999999998764   234578999999999987664211 1235678999999998754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=89.41  E-value=0.19  Score=45.25  Aligned_cols=59  Identities=22%  Similarity=0.197  Sum_probs=29.6

Q ss_pred             hcCCCceEEeecccCCCceee-c---ccCCCCccEEEEecCCCCce-eE-EEECCCceEEEEeccc
Q 047476          194 VQCPFLESLSLKKCWEIEYLD-I---TVPNLRLKRLVIDKCDFNQY-RY-EIAAPNLRFWKYSGTE  253 (463)
Q Consensus       194 s~cp~Le~L~l~~c~~~~~~~-i---~~~~~~L~~L~i~~c~~~~~-~~-~i~aP~L~~l~~~g~~  253 (463)
                      .++|.|+.|+|.+.. +..+. +   ...+++|+.|.+++..+... .+ .+...+|++|.+.|+.
T Consensus       167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Np  231 (267)
T 3rw6_A          167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  231 (267)
T ss_dssp             HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTST
T ss_pred             hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCc
Confidence            466777777777654 22221 1   12355777777766553110 00 0111267777777654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=87.78  E-value=1.2  Score=42.67  Aligned_cols=17  Identities=18%  Similarity=0.047  Sum_probs=8.1

Q ss_pred             CCCCCCCCccceEEecc
Q 047476          165 ASRFNNFIALKELSLGW  181 (463)
Q Consensus       165 ~~~~~~l~~L~~L~L~~  181 (463)
                      ...|.+|++|+++.+.+
T Consensus       264 ~~aF~~c~~L~~l~l~~  280 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYG  280 (401)
T ss_dssp             TTTTTTCTTCCEEEEES
T ss_pred             hhHhhCCCCCCEEEeCC
Confidence            33444455555555543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=87.45  E-value=0.18  Score=45.46  Aligned_cols=57  Identities=23%  Similarity=0.111  Sum_probs=31.1

Q ss_pred             CCceeEEEeeeeeeCC-C----CCCCCCccceEEeccEeech-hHHHHHHhcCCCceEEeecccC
Q 047476          150 HVGLESLELFSCNINA-S----RFNNFIALKELSLGWIQLSV-QSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~~-~----~~~~l~~L~~L~L~~~~~~~-~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      +++|++|+|+++.+.. +    .+..+++|+.|+|++..++. ..+.. +.+. .|++|.|.+..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Np  231 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNS  231 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTST
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCc
Confidence            4566777776665542 1    11256777777777666532 23322 2223 67777776654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=81.87  E-value=0.44  Score=44.59  Aligned_cols=61  Identities=20%  Similarity=0.201  Sum_probs=39.4

Q ss_pred             CccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          146 HVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       146 ~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      .+..+++|+.|+|+++.+.   +..|.++++|+.|+|++..++.-. ..++...+ |+.|.|.+..
T Consensus        51 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           51 DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             GSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSSC
T ss_pred             HhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCCC
Confidence            4556778888888888654   345677888888888887653210 11222333 8888888653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	463
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	5e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	6e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	7e-04
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.003

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 8  DMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLSTKKI--EFLESFFVRDDDNEE 65
          D+ + L  ++   I +YL F++   +  +S+ W  I   +  +  + L S          
Sbjct: 4  DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFN 63

Query: 66 TKQLHRSHFINFVHQ 80
          +  L  S     + Q
Sbjct: 64 SLNLKLSQKYPKLSQ 78

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 6e-04
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 8  DMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI 43
          D  S L  +L   ++S+L  K+  + +   R WR +
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL 52

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (81), Expect = 7e-04
 Identities = 9/34 (26%), Positives = 17/34 (50%)

Query: 10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHI 43
          +  L ++L+  I S L   E  + S + +RW  +
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRL 34

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 9/211 (4%)

Query: 152 GLESLELFSCNINASRFNNF--IALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWE 209
           G+ +       ++     +F    ++ + L    + V ++  +L QC  L++LSL+    
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 210 IEYLDITVPNL-RLKRLVIDKCDFNQYR----YEIAAPNLRFWKYSGTEGMFRVERQNFL 264
            + +  T+     L RL +  C             +   L     S          Q  +
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143

Query: 265 TEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVK 324
             V                   +L   +     L        V+   +          ++
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203

Query: 325 HLTLNAGMHPHEYYGINFMLKSCPSLQTLTI 355
           HL+L+   +      +   L   P+L+TL +
Sbjct: 204 HLSLS-RCYDIIPETLL-ELGEIPTLKTLQV 232

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	463
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.01
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.93
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.8
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.65
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.38
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.26
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.21
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.21
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.12
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.11
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.89
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.83
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.71
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.71
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.55
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.54
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.08
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.01
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.97
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.91
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.65
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.09
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.08
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.93
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.67
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	95.66
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.37
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	94.99
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.39
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	93.93
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.38
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	85.74

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=8.7e-11  Score=72.16  Aligned_cols=35  Identities=26%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             ccCCchHHHHHHHhcCCchhHHhhhccccchhhhh
Q 047476           10 FSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIW   44 (463)
Q Consensus        10 is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw   44 (463)
                      ++.||+|++.+||++||.+|.++++.|||+|+++-
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999863

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.1e-11  Score=108.79  Aligned_cols=176  Identities=16%  Similarity=0.205  Sum_probs=79.1

Q ss_pred             cCCCceeEEEeeeeeeCC---CCCCCCCccceEEeccEe-echhHHHHHHhcCCCceEEeecccCCCceee----cccCC
Q 047476          148 YGHVGLESLELFSCNINA---SRFNNFIALKELSLGWIQ-LSVQSIRELLVQCPFLESLSLKKCWEIEYLD----ITVPN  219 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~~---~~~~~l~~L~~L~L~~~~-~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~----i~~~~  219 (463)
                      .+|++|++|+|.+|.+..   ..+..+++|++|+|+++. +++.++..++.+||.|++|++.+|..+....    +...+
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~  147 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  147 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccc
Confidence            345555555555554331   122345555555555543 4555555555555555555555554433211    11112


Q ss_pred             CCccEEEEecCCCCceeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEE
Q 047476          220 LRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLT  299 (463)
Q Consensus       220 ~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~  299 (463)
                      ++|++|.+.+|........+               .....++|+|+++.+..+....     +.. ...+..++++++|.
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l---------------~~l~~~~~~L~~L~L~~~~~it-----d~~-~~~l~~~~~L~~L~  206 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDL---------------STLVRRCPNLVHLDLSDSVMLK-----NDC-FQEFFQLNYLQHLS  206 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHH---------------HHHHHHCTTCSEEECTTCTTCC-----GGG-GGGGGGCTTCCEEE
T ss_pred             cccchhhhcccccccccccc---------------cccccccccccccccccccCCC-----chh-hhhhcccCcCCEEE
Confidence            34555555544211000000               0011234555555554222111     111 11244577788887


Q ss_pred             Eeccc-cccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcc
Q 047476          300 VCSFL-LQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQ  351 (463)
Q Consensus       300 l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~  351 (463)
                      +++.. +..  .+...+..  ..+|+.|++..+.   ...++..+.+.||+|+
T Consensus       207 L~~C~~i~~--~~l~~L~~--~~~L~~L~l~~~~---~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         207 LSRCYDIIP--ETLLELGE--IPTLKTLQVFGIV---PDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CTTCTTCCG--GGGGGGGG--CTTCCEEECTTSS---CTTCHHHHHHHSTTSE
T ss_pred             CCCCCCCCh--HHHHHHhc--CCCCCEEeeeCCC---CHHHHHHHHHhCcccc
Confidence            76421 110  00000111  1168888876542   2246777778899987

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=3.5e-09  Score=96.26  Aligned_cols=176  Identities=19%  Similarity=0.148  Sum_probs=97.1

Q ss_pred             CCceeEEEeeeeeeCCC----CCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee---cccCCCCc
Q 047476          150 HVGLESLELFSCNINAS----RFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD---ITVPNLRL  222 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~~~----~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~---i~~~~~~L  222 (463)
                      ..+|++|+|++|.+...    -+..+++|++|+|.++.+++..+.. +..||.|+.|++.+|.++++..   +...+++|
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            34677777776665432    1245677777777776666555544 3456777777777776554322   22345567


Q ss_pred             cEEEEecCCCCcee------EEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccce
Q 047476          223 KRLVIDKCDFNQYR------YEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVR  296 (463)
Q Consensus       223 ~~L~i~~c~~~~~~------~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~  296 (463)
                      ++|.+++|.. ...      +.-.+|+|+.|.+.|+.                   ...     .+..+..+...+++++
T Consensus       124 ~~L~ls~c~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-------------------~~i-----~~~~l~~l~~~~~~L~  178 (284)
T d2astb2         124 DELNLSWCFD-FTEKHVQVAVAHVSETITQLNLSGYR-------------------KNL-----QKSDLSTLVRRCPNLV  178 (284)
T ss_dssp             CEEECCCCTT-CCHHHHHHHHHHSCTTCCEEECCSCG-------------------GGS-----CHHHHHHHHHHCTTCS
T ss_pred             cccccccccc-cccccchhhhcccccccchhhhcccc-------------------ccc-----cccccccccccccccc
Confidence            7777766641 110      00112444444443321                   000     1556777888999999


Q ss_pred             EEEEeccc-cccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476          297 VLTVCSFL-LQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       297 ~L~l~~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                      +|.+++.. +...  ....+.  +..+|++|.+..+....+ .++.. +..+|+|+.|++..
T Consensus       179 ~L~L~~~~~itd~--~~~~l~--~~~~L~~L~L~~C~~i~~-~~l~~-L~~~~~L~~L~l~~  234 (284)
T d2astb2         179 HLDLSDSVMLKND--CFQEFF--QLNYLQHLSLSRCYDIIP-ETLLE-LGEIPTLKTLQVFG  234 (284)
T ss_dssp             EEECTTCTTCCGG--GGGGGG--GCTTCCEEECTTCTTCCG-GGGGG-GGGCTTCCEEECTT
T ss_pred             ccccccccCCCch--hhhhhc--ccCcCCEEECCCCCCCCh-HHHHH-HhcCCCCCEEeeeC
Confidence            99997532 2100  000011  112799999976543222 33333 56799999999843

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5.1e-09  Score=79.19  Aligned_cols=40  Identities=25%  Similarity=0.388  Sum_probs=37.1

Q ss_pred             CccccccCCchHHHHHHHhcCCchhHHhhhccccchhhhh
Q 047476            5 DDVDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIW   44 (463)
Q Consensus         5 ~~~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw   44 (463)
                      -..|.|+.||+||+.+||++||.+|+++++.|||+|+.+.
T Consensus        14 ~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             hccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            3579999999999999999999999999999999999753

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=2.1e-09  Score=80.90  Aligned_cols=40  Identities=23%  Similarity=0.448  Sum_probs=36.8

Q ss_pred             cccccCCchHHHHHHHhcCCchhHHhhhccccchhhhhee
Q 047476            7 VDMFSKLTNDLVTVIISYLPFKEAARTSILSRRWRHIWLS   46 (463)
Q Consensus         7 ~D~is~LPd~lL~~ILs~Lp~~d~~rts~lSrrWr~lw~~   46 (463)
                      .|.|+.||+||+.+||++||.+|+++++.|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5889999999999999999999999999999999976543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.55  E-value=9.2e-08  Score=83.50  Aligned_cols=166  Identities=16%  Similarity=0.121  Sum_probs=79.9

Q ss_pred             ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      +..+++|++|+|+++.+. ...+..+++|+.|.+.+..++.  +. -+.+++.|+.+.+.+|..... ......+.++.+
T Consensus        59 l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~~l  134 (227)
T d1h6ua2          59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVL  134 (227)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCC-GGGTTCTTCCEE
T ss_pred             HhcCCCCcEeecCCceeeccccccccccccccccccccccc--cc-ccccccccccccccccccccc-chhccccchhhh
Confidence            445556666666665543 2234556666666666554321  11 134566666666665542221 111222355555


Q ss_pred             EEecCCCCceeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecccc
Q 047476          226 VIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLL  305 (463)
Q Consensus       226 ~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~  305 (463)
                      .+.+|.....                    ..+..+++|+.+.+.........         -+..+++++.|.+++..+
T Consensus       135 ~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~n~~~~~~---------~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         135 YLDLNQITNI--------------------SPLAGLTNLQYLSIGNAQVSDLT---------PLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             ECCSSCCCCC--------------------GGGGGCTTCCEEECCSSCCCCCG---------GGTTCTTCCEEECCSSCC
T ss_pred             hchhhhhchh--------------------hhhccccccccccccccccccch---------hhcccccceecccCCCcc
Confidence            5544432100                    12233444555444322111110         145677777777766554


Q ss_pred             ccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEE
Q 047476          306 QVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTIN  356 (463)
Q Consensus       306 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~  356 (463)
                      ..++.    +...  .+|++|.|..+.    +..+. -++.+|+|+.|+|.
T Consensus       186 ~~l~~----l~~l--~~L~~L~Ls~N~----lt~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         186 SDISP----LASL--PNLIEVHLKNNQ----ISDVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             CCCGG----GGGC--TTCCEEECTTSC----CCBCG-GGTTCTTCCEEEEE
T ss_pred             CCChh----hcCC--CCCCEEECcCCc----CCCCc-ccccCCCCCEEEee
Confidence            43321    1111  167777776542    12222 27788999999885

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.39  E-value=3.1e-07  Score=79.02  Aligned_cols=58  Identities=21%  Similarity=0.055  Sum_probs=27.6

Q ss_pred             cCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          148 YGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      ..+++|++|+|+++.+. .+.+..+++|+.|++++..+++  +. -+.++|.|+.|.+.++.
T Consensus        65 ~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEECTTSC
T ss_pred             hhCCCCCEEeCCCccccCccccccCccccccccccccccc--cc-ccccccccccccccccc
Confidence            34455555555555443 2223445555555555544422  11 13445555555555543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.38  E-value=2.9e-07  Score=78.49  Aligned_cols=57  Identities=14%  Similarity=0.121  Sum_probs=27.1

Q ss_pred             CCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          149 GHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       149 ~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      .+++|++|+|+++.+. .+.+.++++|++|.+.+..+..-.   -+.+++.|+.|.+.++.
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~---~l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT---PLANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG---GGTTCTTCSEEECCSSC
T ss_pred             cCCCcCcCccccccccCcccccCCccccccccccccccccc---ccccccccccccccccc
Confidence            4455555555555443 223445555555555554332110   13455555555555443

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=8.5e-08  Score=74.28  Aligned_cols=38  Identities=21%  Similarity=0.520  Sum_probs=35.1

Q ss_pred             ccccccCCc----hHHHHHHHhcCCchhHHhhhccccchhhh
Q 047476            6 DVDMFSKLT----NDLVTVIISYLPFKEAARTSILSRRWRHI   43 (463)
Q Consensus         6 ~~D~is~LP----d~lL~~ILs~Lp~~d~~rts~lSrrWr~l   43 (463)
                      ..|.|+.||    |||+.+|||+||.+|+++++.|||+|+.+
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            468999999    59999999999999999999999999865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=6.6e-07  Score=79.92  Aligned_cols=189  Identities=16%  Similarity=0.039  Sum_probs=114.0

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeeccc
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITV  217 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~  217 (463)
                      ..+|..+.  +++++|+|+++.+.   +..+.++++|++|+|++..++.  +. ....+|.|+.|++.++.-........
T Consensus        23 ~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l~~~~~~~~   97 (266)
T d1p9ag_          23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQLQSLPLLGQ   97 (266)
T ss_dssp             SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCCSSCCCCTT
T ss_pred             CeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccccccccccccc
Confidence            35666554  47899999988664   3457789999999999876642  11 12568999999999876333233344


Q ss_pred             CCCCccEEEEecCCCCc-e-eEEEECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhc
Q 047476          218 PNLRLKRLVIDKCDFNQ-Y-RYEIAAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQ  291 (463)
Q Consensus       218 ~~~~L~~L~i~~c~~~~-~-~~~i~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~  291 (463)
                      ..++|+.|.+.++.... . ...-..++++.+.+.+....    ..+..++.|+.+.+....-....       .+.+..
T Consensus        98 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~-------~~~~~~  170 (266)
T d1p9ag_          98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP-------AGLLNG  170 (266)
T ss_dssp             TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-------TTTTTT
T ss_pred             cccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC-------cccccc
Confidence            56689999988776311 0 00112466777777665322    12344666777766533211111       123456


Q ss_pred             CccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCC--CchhhHHHHhhhc
Q 047476          292 LEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH--PHEYYGINFMLKS  346 (463)
Q Consensus       292 l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~l~~lL~~  346 (463)
                      +++++.|.|++..++.++....     ...+|++|.|.....  ..+..++..+++.
T Consensus       171 l~~L~~L~Ls~N~L~~lp~~~~-----~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~  222 (266)
T d1p9ag_         171 LENLDTLLLQENSLYTIPKGFF-----GSHLLPFAFLHGNPWLCNCEILYFRRWLQD  222 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTT-----TTCCCSEEECCSCCBCCSGGGHHHHHHHHH
T ss_pred             ccccceeecccCCCcccChhHC-----CCCCCCEEEecCCCCCCCcchHHHHHHHHh
Confidence            8888888888877776654322     122677888876542  2334556665553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.21  E-value=8.1e-07  Score=76.30  Aligned_cols=160  Identities=15%  Similarity=0.096  Sum_probs=101.3

Q ss_pred             CceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEec
Q 047476          151 VGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDK  229 (463)
Q Consensus       151 ~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~  229 (463)
                      .+|++|.+.++.+. ..++..|++|++|+|++..+++  +.. ++.++.|+.|.+.++. +..+.--..+++|+.|.+.+
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~~  121 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEH  121 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTT
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccC--ccc-cccCcccccccccccc-cccccccccccccccccccc
Confidence            46788888877765 3455678999999999887643  111 4678999999998875 44444334467899999988


Q ss_pred             CCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecccccc
Q 047476          230 CDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQV  307 (463)
Q Consensus       230 c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~  307 (463)
                      |....-......|+++.+.+.+....  ..+..+++|+.+.+....-...         .-+..+++++.|.+++..++.
T Consensus       122 ~~~~~~~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i---------~~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         122 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI---------VPLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             SCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC---------GGGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc---------ccccCCCCCCEEECCCCCCCC
Confidence            86421111123577888877665322  2345677788887764321111         015678899999998776654


Q ss_pred             ccCCCCCCCCCCCCceeEEEEe
Q 047476          308 IPHAEEPFGMTVPLEVKHLTLN  329 (463)
Q Consensus       308 ~~~~~~~~~~~~~~~L~~L~l~  329 (463)
                      ++.    +...  .+|++|+|.
T Consensus       193 l~~----l~~l--~~L~~L~Ls  208 (210)
T d1h6ta2         193 LRA----LAGL--KNLDVLELF  208 (210)
T ss_dssp             CGG----GTTC--TTCSEEEEE
T ss_pred             Chh----hcCC--CCCCEEEcc
Confidence            431    1111  178888875

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.12  E-value=1.3e-06  Score=74.25  Aligned_cols=146  Identities=13%  Similarity=0.050  Sum_probs=97.1

Q ss_pred             CCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEe
Q 047476          150 HVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVID  228 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~  228 (463)
                      ..++++|.+.++.+. ..++..|++|++|+|++..+++-.  . +.++|.|+.|.+.++.. ..+..-..+++|+.|.+.
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~--~-l~~l~~L~~L~l~~n~~-~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT--P-LKNLTKLVDILMNNNQI-ADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCCGGGTTCTTCSEEECC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc--c-ccCCccccccccccccc-cccccccccccccccccc
Confidence            356788888887765 345667899999999988774321  1 67899999999998763 333323446789999998


Q ss_pred             cCCCCceeEEEECCCceEEEEecccce-e-eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccc
Q 047476          229 KCDFNQYRYEIAAPNLRFWKYSGTEGM-F-RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQ  306 (463)
Q Consensus       229 ~c~~~~~~~~i~aP~L~~l~~~g~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~  306 (463)
                      +|........-..|+|+.+.+++.... + .+..+++|+.+.+....-...         .-+.++++++.|.+++..+.
T Consensus       115 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l---------~~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         115 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDL---------KPLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC---------GGGTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCC---------ccccCCCCCCEEECCCCCCC
Confidence            886321111113688999988876432 2 255677888887764321111         11567899999999887655


Q ss_pred             cc
Q 047476          307 VI  308 (463)
Q Consensus       307 ~~  308 (463)
                      .+
T Consensus       186 ~i  187 (199)
T d2omxa2         186 DI  187 (199)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.11  E-value=3.6e-06  Score=72.97  Aligned_cols=81  Identities=19%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             ccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEE
Q 047476          147 VYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRL  225 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L  225 (463)
                      +..+++|+.+.+.++.+. .+.+..+++|+.|.+.++......   -+..++.++.+.+.++.......+ ...++|+.|
T Consensus        81 l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~L~~L  156 (227)
T d1h6ua2          81 LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT---PLAGLSNLQVLYLDLNQITNISPL-AGLTNLQYL  156 (227)
T ss_dssp             GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCCG---GGTTCTTCCEEECCSSCCCCCGGG-GGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccc---hhccccchhhhhchhhhhchhhhh-ccccccccc
Confidence            567789999999988765 345678999999999988653211   146789999999988764333322 334589999


Q ss_pred             EEecCC
Q 047476          226 VIDKCD  231 (463)
Q Consensus       226 ~i~~c~  231 (463)
                      .+.+|.
T Consensus       157 ~l~~n~  162 (227)
T d1h6ua2         157 SIGNAQ  162 (227)
T ss_dssp             ECCSSC
T ss_pred             cccccc
Confidence            988876

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.95  E-value=4.4e-06  Score=77.36  Aligned_cols=257  Identities=12%  Similarity=0.034  Sum_probs=130.1

Q ss_pred             ccCCCceeEEEeeeeeeCCC-------CCCCCCccceEEeccEeec------h---hHHHHHHhcCCCceEEeecccCCC
Q 047476          147 VYGHVGLESLELFSCNINAS-------RFNNFIALKELSLGWIQLS------V---QSIRELLVQCPFLESLSLKKCWEI  210 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~~-------~~~~l~~L~~L~L~~~~~~------~---~~l~~lls~cp~Le~L~l~~c~~~  210 (463)
                      +....+|+.|+|+++.+...       .+...++|+.|++.++...      .   ..+...+..|+.|++|+|.+|. +
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i  105 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F  105 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-c
Confidence            33456677777776655321       2345677777777765321      1   2244445678888888888774 2


Q ss_pred             cee------ecccCCCCccEEEEecCCCCceeEEEECCCceEEEEecccceeeeecCCCccEEEEeeecCCCCchhHHHH
Q 047476          211 EYL------DITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGMFRVERQNFLTEVELDFALQPDFDEEIGEF  284 (463)
Q Consensus       211 ~~~------~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~  284 (463)
                      +..      .....+++|++|.+.+|.+.......-+..+..+..     .......+.|+.+.+....   ........
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~-----~~~~~~~~~L~~l~l~~n~---i~~~~~~~  177 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV-----NKKAKNAPPLRSIICGRNR---LENGSMKE  177 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHH-----HHHHHTCCCCCEEECCSSC---CTGGGHHH
T ss_pred             ccccccchhhhhcccccchheeccccccccccccccccccccccc-----ccccccCcccceeeccccc---cccccccc
Confidence            211      111234578888887776421100000000000000     0001122334444333111   11111344


Q ss_pred             HHHHhhcCccceEEEEeccccccc---cCCCCCCCCCCCCceeEEEEecCCC-CchhhHHHHhhhcCCCcceEEEEcCCC
Q 047476          285 LYELLRQLEIVRVLTVCSFLLQVI---PHAEEPFGMTVPLEVKHLTLNAGMH-PHEYYGINFMLKSCPSLQTLTINIGPG  360 (463)
Q Consensus       285 ~~~ll~~l~~l~~L~l~~~~~~~~---~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~lL~~~P~L~~L~l~~~~~  360 (463)
                      +...+..++.++.|.+....+..-   ......+.  ...++++|++..+.- ......+...++.+|+|++|++.... 
T Consensus       178 l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~--~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-  254 (344)
T d2ca6a1         178 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-  254 (344)
T ss_dssp             HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-
T ss_pred             ccchhhhhhhhcccccccccccccccccchhhhhc--chhhhcccccccccccccccccccccccccccchhhhhhcCc-
Confidence            566677788888888865443210   00000011  111688888865432 22345678889999999999984332 


Q ss_pred             CCCCCCCCCCCCCchhhhcccc-ccccccccceeEEEEEeeec-chhhHHHHHHHHhccccccceeeec
Q 047476          361 RRFPNYRPPFELDPEKCWTKNI-VLYPCVTSSLRVVNVRGFKG-TMTEARFLNYLIFFGNVLQELNLYL  427 (463)
Q Consensus       361 ~~~~~~~~~~~~~~~~~w~~~~-~~~~c~~~~Lk~V~i~~f~g-~~~e~~l~~~ll~~a~~L~~m~i~~  427 (463)
                                 .... ...... .+..+....|+++.+.+-.- .+....+++.+-.+.+.|+++.+..
T Consensus       255 -----------i~~~-g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         255 -----------LSAR-GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             -----------CCHH-HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             -----------cCch-hhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence                       2111 111110 11122335789998886543 3344556666666888999888754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.89  E-value=8.6e-06  Score=76.23  Aligned_cols=184  Identities=17%  Similarity=0.101  Sum_probs=84.5

Q ss_pred             cCCCceeEEEeeeeeeCC-CCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476          148 YGHVGLESLELFSCNINA-SRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV  226 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~  226 (463)
                      ..++++..|.+.++.+.. .....+++|++|++.+..+++-.   .+..++.|+.|.+.++. +..+.-...+++|+.|.
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~  269 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELK  269 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEE
T ss_pred             ccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc---hhhcccccchhccccCc-cCCCCcccccccCCEee
Confidence            344566666666655432 22344666777777666553211   24566777777777664 22222223345677776


Q ss_pred             EecCCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccc
Q 047476          227 IDKCDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFL  304 (463)
Q Consensus       227 i~~c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~  304 (463)
                      +.++......-....+.++.+...+....  ..+..+++++.+.+....-...         .-+..+++++.|.++++.
T Consensus       270 l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l---------~~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI---------SPVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC---------GGGGGCTTCCEEECCSSC
T ss_pred             ccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC---------cccccCCCCCEEECCCCC
Confidence            66554210000112344444444433211  1233445555555542211100         013456666666666554


Q ss_pred             cccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEE
Q 047476          305 LQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTI  355 (463)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l  355 (463)
                      +..++.    +..  ..+|++|++..+.    +..+.. ++.+|+|+.|+|
T Consensus       341 l~~l~~----l~~--l~~L~~L~l~~N~----l~~l~~-l~~l~~L~~L~L  380 (384)
T d2omza2         341 VSDVSS----LAN--LTNINWLSAGHNQ----ISDLTP-LANLTRITQLGL  380 (384)
T ss_dssp             CCCCGG----GGG--CTTCCEEECCSSC----CCBCGG-GTTCTTCSEEEC
T ss_pred             CCCChh----HcC--CCCCCEEECCCCc----CCCChh-hccCCCCCEeeC
Confidence            443321    000  0156666664431    112221 455666666665

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.83  E-value=6.6e-07  Score=76.03  Aligned_cols=65  Identities=23%  Similarity=0.186  Sum_probs=43.7

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      .+|..+...++|++|+|+++.+. .+.+.++++|++|+|++..++.  +..+...++.|+.|.+.++.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~  104 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ  104 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEE
T ss_pred             hhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccccccc
Confidence            45555666778888888888775 3445678888888888877642  22233445677777777663

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.71  E-value=1.4e-05  Score=72.35  Aligned_cols=66  Identities=23%  Similarity=0.151  Sum_probs=46.0

Q ss_pred             ceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          140 VFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      ...+|..++  +++++|+|+++.+.   +..+.++++|++|++.+..+..- ....+.+++.|+.|.+.++.
T Consensus        22 L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i-~~~~f~~l~~L~~L~l~~n~   90 (305)
T d1xkua_          22 LEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLYLSKNQ   90 (305)
T ss_dssp             CCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccccc-chhhhhCCCccCEecccCCc
Confidence            345676654  47889999888764   33577888999999988765321 01235678899999988874

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.71  E-value=4.4e-06  Score=76.26  Aligned_cols=203  Identities=13%  Similarity=-0.002  Sum_probs=113.2

Q ss_pred             ceeCCcCccCCCceeEEEeeee-eeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-
Q 047476          140 VFDLPMHVYGHVGLESLELFSC-NIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-  214 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~-~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-  214 (463)
                      ...+|..+.++++|++|+|+++ .+.   |+.+..+++|++|+|++..+... ....+..++.|+.+.+..+.....+. 
T Consensus        65 ~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l~l~~N~~~~~~p~  143 (313)
T d1ogqa_          65 PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPP  143 (313)
T ss_dssp             CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred             CCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcccccccccccccCch
Confidence            4578999999999999999874 442   45678899999999998876321 12235678999999998875332221 


Q ss_pred             cccCCCCccEEEEecCCCCceeE---EEECCCc-eEEEEecccce-eeeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476          215 ITVPNLRLKRLVIDKCDFNQYRY---EIAAPNL-RFWKYSGTEGM-FRVERQNFLTEVELDFALQPDFDEEIGEFLYELL  289 (463)
Q Consensus       215 i~~~~~~L~~L~i~~c~~~~~~~---~i~aP~L-~~l~~~g~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll  289 (463)
                      .-..+++|+.+.+.++.+. ..+   ....+++ +.+.+.+.... ........+....++..... ..    .......
T Consensus       144 ~l~~l~~L~~l~l~~n~l~-~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~-~~----~~~~~~~  217 (313)
T d1ogqa_         144 SISSLPNLVGITFDGNRIS-GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM-LE----GDASVLF  217 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCE-EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE-EE----ECCGGGC
T ss_pred             hhccCcccceeeccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-cc----ccccccc
Confidence            1234568888988877631 111   0112333 44544433211 11112222333333322110 00    0011234


Q ss_pred             hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476          290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                      ..+++++.|.+....+......   +  ....+++.|+|..+--.   ..+..-+..+|+|+.|++..
T Consensus       218 ~~~~~l~~l~~~~~~l~~~~~~---~--~~~~~L~~L~Ls~N~l~---g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         218 GSDKNTQKIHLAKNSLAFDLGK---V--GLSKNLNGLDLRNNRIY---GTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CTTSCCSEEECCSSEECCBGGG---C--CCCTTCCEEECCSSCCE---ECCCGGGGGCTTCCEEECCS
T ss_pred             cccccccccccccccccccccc---c--ccccccccccCccCeec---ccCChHHhCCCCCCEEECcC
Confidence            4677888888766554422110   1  11126888887643211   13445577889999999854

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.68  E-value=2.6e-05  Score=72.87  Aligned_cols=163  Identities=15%  Similarity=0.074  Sum_probs=108.0

Q ss_pred             cCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEE
Q 047476          148 YGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLV  226 (463)
Q Consensus       148 ~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~  226 (463)
                      ..+++|++|++.++.+. .+.+..+++|+.|++.+..++.-.   -+.++|.|+.|.+.++.- ..+.-...++.++.+.
T Consensus       216 ~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~~~l-~~~~~~~~~~~l~~l~  291 (384)
T d2omza2         216 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQI-SNISPLAGLTALTNLE  291 (384)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCC-CCCGGGTTCTTCSEEE
T ss_pred             cccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCC---cccccccCCEeeccCccc-CCCCcccccccccccc
Confidence            34578999999999876 345678999999999998764321   167899999999988753 3222223355788888


Q ss_pred             EecCCCCceeEEEECCCceEEEEecccce-e-eeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccc
Q 047476          227 IDKCDFNQYRYEIAAPNLRFWKYSGTEGM-F-RVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFL  304 (463)
Q Consensus       227 i~~c~~~~~~~~i~aP~L~~l~~~g~~~~-~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~  304 (463)
                      +..+...........++++.+.+++.... + .+..+|+|+++.+....-...        . -+..+++++.|++++..
T Consensus       292 ~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l--------~-~l~~l~~L~~L~l~~N~  362 (384)
T d2omza2         292 LNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDV--------S-SLANLTNINWLSAGHNQ  362 (384)
T ss_dssp             CCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--------G-GGGGCTTCCEEECCSSC
T ss_pred             ccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCC--------h-hHcCCCCCCEEECCCCc
Confidence            88776321111223678888888776432 2 367889999999875421111        1 25679999999998776


Q ss_pred             cccccCCCCCCCCCCCCceeEEEEe
Q 047476          305 LQVIPHAEEPFGMTVPLEVKHLTLN  329 (463)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~L~~L~l~  329 (463)
                      +..++.    +...  .+|+.|.|.
T Consensus       363 l~~l~~----l~~l--~~L~~L~L~  381 (384)
T d2omza2         363 ISDLTP----LANL--TRITQLGLN  381 (384)
T ss_dssp             CCBCGG----GTTC--TTCSEEECC
T ss_pred             CCCChh----hccC--CCCCEeeCC
Confidence            554321    1111  168888774

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=3.8e-05  Score=62.43  Aligned_cols=58  Identities=17%  Similarity=0.119  Sum_probs=27.3

Q ss_pred             CCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          150 HVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      ++.|++|+|+++.+. .+.+..+++|++|++++..++.-. ..++.++|.|+.|.+.++.
T Consensus        40 l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L~~N~   98 (162)
T d1a9na_          40 LDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNS   98 (162)
T ss_dssp             TTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCC
T ss_pred             cccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCC-ccccccccccccceecccc
Confidence            445555555555443 233445555555555555432100 1123445555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.6e-05  Score=63.51  Aligned_cols=14  Identities=14%  Similarity=0.562  Sum_probs=10.4

Q ss_pred             HhhhcCCCcceEEE
Q 047476          342 FMLKSCPSLQTLTI  355 (463)
Q Consensus       342 ~lL~~~P~L~~L~l  355 (463)
                      ..+..+|+|+.|+-
T Consensus       133 ~~i~~lp~L~~LD~  146 (162)
T d1a9na_         133 YVIYKVPQVRVLDF  146 (162)
T ss_dssp             HHHHHCTTCSEETT
T ss_pred             HHHHHCCCcCeeCC
Confidence            45677899998864

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=4e-05  Score=67.88  Aligned_cols=171  Identities=16%  Similarity=0.042  Sum_probs=102.4

Q ss_pred             CccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCc-eeEEEECCCceEEEEe
Q 047476          172 IALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQ-YRYEIAAPNLRFWKYS  250 (463)
Q Consensus       172 ~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~-~~~~i~aP~L~~l~~~  250 (463)
                      ++|+.|+|++..++.-. ...+.+++.|++|.|.++. +..+.....+++|+.|.++++.+.. ....-..|+|+.+.++
T Consensus        31 ~~l~~L~Ls~N~i~~l~-~~~f~~l~~L~~L~L~~N~-l~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TTCCEEECTTSCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECC
T ss_pred             cCCCEEECcCCcCCCcC-HHHhhcccccccccccccc-cccccccccccccccccccccccccccccccccccccccccc
Confidence            57999999988664211 1235789999999999985 6666655667899999999887421 1111235788888887


Q ss_pred             cccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccccccCCCCCCCCCCCCceeEE
Q 047476          251 GTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHL  326 (463)
Q Consensus       251 g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L  326 (463)
                      +....    ..+..+++++.+.+....-....       ......+++++.|.+++..+..++...  +.  ...+|++|
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-------~~~~~~l~~l~~l~l~~N~l~~~~~~~--~~--~l~~L~~L  177 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLP-------PGLLTPTPKLEKLSLANNNLTELPAGL--LN--GLENLDTL  177 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-------TTTTTTCTTCCEEECTTSCCSCCCTTT--TT--TCTTCCEE
T ss_pred             ccccceeeccccccccccccccccccccceec-------cccccccccchhcccccccccccCccc--cc--ccccccee
Confidence            75432    22345566777766532211111       123456778888888776665443221  01  11268888


Q ss_pred             EEecCCCCchhhHHHHhhhcCCCcceEEEEcCC
Q 047476          327 TLNAGMHPHEYYGINFMLKSCPSLQTLTINIGP  359 (463)
Q Consensus       327 ~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~~~  359 (463)
                      +|....    +..+..-+-..++|+.|.|..-+
T Consensus       178 ~Ls~N~----L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         178 LLQENS----LYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ECCSSC----CCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ecccCC----CcccChhHCCCCCCCEEEecCCC
Confidence            876432    11222222346778888775443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00015  Score=64.60  Aligned_cols=200  Identities=18%  Similarity=0.097  Sum_probs=112.5

Q ss_pred             eeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee--c
Q 047476          141 FDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD--I  215 (463)
Q Consensus       141 ~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~--i  215 (463)
                      ..+|..++  +++++|+|+++.+.   +..+.++++|+.|++++..+..-. .....+++.++.+.+.....+..+.  .
T Consensus        24 ~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~~~~~~l~~~~  100 (284)
T d1ozna_          24 QAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNAQLRSVDPAT  100 (284)
T ss_dssp             SSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTT
T ss_pred             CccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccccccccccchh
Confidence            35665554  46899999988653   456778999999999876543211 1234567888888877665555443  1


Q ss_pred             ccCCCCccEEEEecCCCCc-ee-EEEECCCceEEEEecccce-e---eeecCCCccEEEEeeecCCCCchhHHHHHHHHh
Q 047476          216 TVPNLRLKRLVIDKCDFNQ-YR-YEIAAPNLRFWKYSGTEGM-F---RVERQNFLTEVELDFALQPDFDEEIGEFLYELL  289 (463)
Q Consensus       216 ~~~~~~L~~L~i~~c~~~~-~~-~~i~aP~L~~l~~~g~~~~-~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll  289 (463)
                      -..+++|+.|.+.++.... .. ..-..++|+.+.+.+.... +   .+...+.|+.+.+....-....       ...+
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~-------~~~f  173 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP-------ERAF  173 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC-------TTTT
T ss_pred             hcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccc-------hhhh
Confidence            2335688888888776311 11 1112566777777765322 1   2445666777766532110000       0234


Q ss_pred             hcCccceEEEEeccccccccCCCCCCCCCCCCceeEEEEecCCCCchhhHHHHhhhcCCCcceEEEEc
Q 047476          290 RQLEIVRVLTVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMHPHEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       290 ~~l~~l~~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                      .++++++.+.+....+..+...  .+...  -++++|++....-..   .....+..+++|+.|++..
T Consensus       174 ~~l~~L~~l~l~~N~l~~i~~~--~f~~l--~~L~~L~l~~N~i~~---~~~~~~~~~~~L~~L~l~~  234 (284)
T d1ozna_         174 RGLHSLDRLLLHQNRVAHVHPH--AFRDL--GRLMTLYLFANNLSA---LPTEALAPLRALQYLRLND  234 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTT--TTTTC--TTCCEEECCSSCCSC---CCHHHHTTCTTCCEEECCS
T ss_pred             ccccccchhhhhhccccccChh--Hhhhh--hhccccccccccccc---ccccccccccccCEEEecC
Confidence            5677778787766554433211  11111  157777775432111   1223466778888887743

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.22  E-value=4.8e-05  Score=58.74  Aligned_cols=59  Identities=15%  Similarity=0.117  Sum_probs=36.9

Q ss_pred             ccCCCceeEEEeeeeeeC--CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          147 VYGHVGLESLELFSCNIN--ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      +..++.|++|+++++.+.  |+.+..+++|+.|++++..++.  +.. +..+|.|+.|.+.+..
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSC
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCc
Confidence            456667777777777654  2345567777777777765532  111 4567777777777654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.08  E-value=0.00018  Score=66.02  Aligned_cols=74  Identities=18%  Similarity=0.154  Sum_probs=42.1

Q ss_pred             HHHHHhhcCccceEEEEecccccccc--CCCCCCCCCCCCceeEEEEecCCC-CchhhHHHHhhh-cCCCcceEEEEc
Q 047476          284 FLYELLRQLEIVRVLTVCSFLLQVIP--HAEEPFGMTVPLEVKHLTLNAGMH-PHEYYGINFMLK-SCPSLQTLTINI  357 (463)
Q Consensus       284 ~~~~ll~~l~~l~~L~l~~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~l~~lL~-~~P~L~~L~l~~  357 (463)
                      .+...+..+++++.|.++++.+....  .-...+.......+++|++..+.- ......+...++ ++|+|++|+|..
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            45566777888888888665432100  000001111123688888876532 223456677675 799999998743

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00022  Score=61.72  Aligned_cols=88  Identities=14%  Similarity=0.232  Sum_probs=54.7

Q ss_pred             eCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeecc--
Q 047476          142 DLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDIT--  216 (463)
Q Consensus       142 ~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i~--  216 (463)
                      .+|..++  .++++|+|+++.+.   +..|.++++|++|+|++..+...--...+.+++.++.|.+..+..+......  
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            4665544  47888999887654   3456788888888888764321100112456788888888777655544321  


Q ss_pred             cCCCCccEEEEecCC
Q 047476          217 VPNLRLKRLVIDKCD  231 (463)
Q Consensus       217 ~~~~~L~~L~i~~c~  231 (463)
                      ..+++|+.|.+.++.
T Consensus       100 ~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1         100 QNLPNLQYLLISNTG  114 (242)
T ss_dssp             ECCTTCCEEEEESCC
T ss_pred             cccccccccccchhh
Confidence            234577777776664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.97  E-value=0.001  Score=59.51  Aligned_cols=196  Identities=13%  Similarity=0.015  Sum_probs=96.4

Q ss_pred             ccCCCceeEEEeeeeeeCCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCcee---ecccCCCCcc
Q 047476          147 VYGHVGLESLELFSCNINASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYL---DITVPNLRLK  223 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~---~i~~~~~~L~  223 (463)
                      +..++.|++|++.++.+..-....++.|+.|.+....+..- -...+..++.+..+...........   .....+++|+
T Consensus        75 f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l-~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~  153 (305)
T d1xkua_          75 FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLS  153 (305)
T ss_dssp             TTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCC
T ss_pred             hhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhh-hhhhhhccccccccccccccccccCCCccccccccccC
Confidence            33455566666655544321112344555555554433210 1122445666666666554321111   1122345788


Q ss_pred             EEEEecCCCCceeEEE-ECCCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEE
Q 047476          224 RLVIDKCDFNQYRYEI-AAPNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVL  298 (463)
Q Consensus       224 ~L~i~~c~~~~~~~~i-~aP~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L  298 (463)
                      .+.+.+|..  ..+.. ..++|++|.+.+....    ..+..++.++.+.+....-....       ...+.++++++.|
T Consensus       154 ~l~l~~n~l--~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~-------~~~~~~l~~L~~L  224 (305)
T d1xkua_         154 YIRIADTNI--TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD-------NGSLANTPHLREL  224 (305)
T ss_dssp             EEECCSSCC--CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEEC-------TTTGGGSTTCCEE
T ss_pred             ccccccCCc--cccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccc-------cccccccccceee
Confidence            888877763  22211 2577888887765432    23445666776666532111100       1234567888888


Q ss_pred             EEeccccccccCCCCCCCCCCCCceeEEEEecCCC-C--chhhHHHHhhhcCCCcceEEEEc
Q 047476          299 TVCSFLLQVIPHAEEPFGMTVPLEVKHLTLNAGMH-P--HEYYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       299 ~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~--~~~~~l~~lL~~~P~L~~L~l~~  357 (463)
                      +|++..+..++.+-..   .  .+|++|.|..+-- .  .........+...++|+.|.|..
T Consensus       225 ~L~~N~L~~lp~~l~~---l--~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         225 HLNNNKLVKVPGGLAD---H--KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             ECCSSCCSSCCTTTTT---C--SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             eccccccccccccccc---c--cCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCC
Confidence            8887766655432111   1  1677777764321 0  00011123345567788887753

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.91  E-value=0.00023  Score=54.68  Aligned_cols=79  Identities=28%  Similarity=0.278  Sum_probs=60.4

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeech-hHHHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSV-QSIREL  192 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~-~~l~~l  192 (463)
                      ..+++|++...             ....+|..+..+++|++|.++++.+. .+.+..+++|+.|++++..++. ..+. .
T Consensus        20 ~~L~~L~ls~N-------------~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~-~   85 (124)
T d1dcea3          20 LLVTHLDLSHN-------------RLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQ-P   85 (124)
T ss_dssp             TTCCEEECCSS-------------CCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTG-G
T ss_pred             CCCCEEECCCC-------------ccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCch-h
Confidence            46788877532             12357777788899999999999876 4567889999999999988753 3333 3


Q ss_pred             HhcCCCceEEeeccc
Q 047476          193 LVQCPFLESLSLKKC  207 (463)
Q Consensus       193 ls~cp~Le~L~l~~c  207 (463)
                      +..||.|+.|++.+-
T Consensus        86 l~~~~~L~~L~l~~N  100 (124)
T d1dcea3          86 LVSCPRLVLLNLQGN  100 (124)
T ss_dssp             GGGCTTCCEEECTTS
T ss_pred             hcCCCCCCEEECCCC
Confidence            578999999999874

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.65  E-value=0.00072  Score=56.19  Aligned_cols=88  Identities=17%  Similarity=0.164  Sum_probs=60.5

Q ss_pred             ceeCCcCccCCCceeEEEeeeeeeC----CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceee-
Q 047476          140 VFDLPMHVYGHVGLESLELFSCNIN----ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLD-  214 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~~~----~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~-  214 (463)
                      ...+|..++  +++++|+|+++.+.    ...|.++++|+.|+|++..+..- ....+.+.+.|+.|.+.+.. +..+. 
T Consensus        20 L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~-l~~l~~   95 (192)
T d1w8aa_          20 LKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK-IKEISN   95 (192)
T ss_dssp             CSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC-CCEECS
T ss_pred             cCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeecccc-ccccCH
Confidence            345676654  57999999998763    23456799999999988765321 12345678999999999875 44442 


Q ss_pred             -cccCCCCccEEEEecCC
Q 047476          215 -ITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       215 -i~~~~~~L~~L~i~~c~  231 (463)
                       .-..+++|+.|.+.++.
T Consensus        96 ~~F~~l~~L~~L~L~~N~  113 (192)
T d1w8aa_          96 KMFLGLHQLKTLNLYDNQ  113 (192)
T ss_dssp             SSSTTCTTCCEEECCSSC
T ss_pred             HHHhCCCcccccccCCcc
Confidence             22345688888887775

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0034  Score=49.98  Aligned_cols=68  Identities=18%  Similarity=0.158  Sum_probs=46.9

Q ss_pred             ceeCCcCccCCCceeEEEeeeee-e---CCCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccC
Q 047476          140 VFDLPMHVYGHVGLESLELFSCN-I---NASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCW  208 (463)
Q Consensus       140 ~~~lp~~l~~~~~L~~L~L~~~~-~---~~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~  208 (463)
                      ....|..+...++|++|+|.++. +   ++..|.++++|+.|+|++..++.-. ...+.+.+.|+.|+|.+..
T Consensus        20 ~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          20 ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC
Confidence            34566667777889999987542 3   3456778889999999887653210 1235678888888888765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0029  Score=54.24  Aligned_cols=99  Identities=21%  Similarity=0.240  Sum_probs=61.1

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCcC-ccCCCceeEEEeeeeee----CCCCCCCCCccceEEeccEe-echhH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMH-VYGHVGLESLELFSCNI----NASRFNNFIALKELSLGWIQ-LSVQS  188 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~-l~~~~~L~~L~L~~~~~----~~~~~~~l~~L~~L~L~~~~-~~~~~  188 (463)
                      +++++|++.-..             ...+|.. +.++++|++|+|+++.+    ++..+.+++.+++|.+.... +.. .
T Consensus        29 ~~l~~L~Ls~n~-------------i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~-~   94 (242)
T d1xwdc1          29 RNAIELRFVLTK-------------LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-I   94 (242)
T ss_dssp             SCCSEEEEESCC-------------CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCE-E
T ss_pred             CCCCEEECcCCc-------------CCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccc-c
Confidence            467788775321             2356654 45688999999998853    34456678999999876542 111 1


Q ss_pred             HHHHHhcCCCceEEeecccCCCceeecccCCCCccEEEEe
Q 047476          189 IRELLVQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVID  228 (463)
Q Consensus       189 l~~lls~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~  228 (463)
                      ....+.++|.|+.|.+.++. +...........++.+.+.
T Consensus        95 ~~~~~~~l~~L~~l~l~~~~-l~~~~~~~~~~~l~~l~~~  133 (242)
T d1xwdc1          95 NPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLD  133 (242)
T ss_dssp             CTTSEECCTTCCEEEEESCC-CCSCCCCTTTCBSSCEEEE
T ss_pred             ccccccccccccccccchhh-hcccccccccccccccccc
Confidence            12235789999999999875 3333222223345555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.93  E-value=0.0045  Score=49.88  Aligned_cols=21  Identities=14%  Similarity=0.181  Sum_probs=17.1

Q ss_pred             hhHHHHhhhcCCCcceEEEEc
Q 047476          337 YYGINFMLKSCPSLQTLTINI  357 (463)
Q Consensus       337 ~~~l~~lL~~~P~L~~L~l~~  357 (463)
                      ...+...|+..+.|++|.++.
T Consensus       120 ~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_         120 EMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             HHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHHhCCCccEeeCcC
Confidence            456888899999999988743

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.78  E-value=0.0027  Score=56.92  Aligned_cols=189  Identities=12%  Similarity=0.033  Sum_probs=106.8

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRE  191 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~  191 (463)
                      ..++.|++.-.+.           -.-.+|..+.++++|++|+|+++.+.   +..+..+++|+.+++....+.. .+..
T Consensus        76 ~~L~~L~Ls~~N~-----------l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~-~~p~  143 (313)
T d1ogqa_          76 PYLNFLYIGGINN-----------LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG-TLPP  143 (313)
T ss_dssp             TTCSEEEEEEETT-----------EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES-CCCG
T ss_pred             ccccccccccccc-----------cccccccccccccccchhhhccccccccccccccchhhhcccccccccccc-cCch
Confidence            4778888853211           01258888999999999999998764   4456679999999999876432 1223


Q ss_pred             HHhcCCCceEEeecccCCCceee-cccCCCC-ccEEEEecCCCCceeEE---EECCCceEEEEecccc----eeeeecCC
Q 047476          192 LLVQCPFLESLSLKKCWEIEYLD-ITVPNLR-LKRLVIDKCDFNQYRYE---IAAPNLRFWKYSGTEG----MFRVERQN  262 (463)
Q Consensus       192 lls~cp~Le~L~l~~c~~~~~~~-i~~~~~~-L~~L~i~~c~~~~~~~~---i~aP~L~~l~~~g~~~----~~~~~~~~  262 (463)
                      -+.+++.|+.+.+.++...+.+. ....... ++.+.+.++.+  ....   +....+..+.+.....    ...+..++
T Consensus       144 ~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l--~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~  221 (313)
T d1ogqa_         144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL--TGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK  221 (313)
T ss_dssp             GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE--EEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTS
T ss_pred             hhccCcccceeeccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            46789999999999886433321 1112223 36666655431  1110   1112233343333221    12234566


Q ss_pred             CccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEeccccc-cccCCCCCCCCCCCCceeEEEEec
Q 047476          263 FLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLLQ-VIPHAEEPFGMTVPLEVKHLTLNA  330 (463)
Q Consensus       263 ~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~  330 (463)
                      +++.+.+....-...       . .-+..+++++.|+++...+. .+|..-..   .  .+|++|+|..
T Consensus       222 ~l~~l~~~~~~l~~~-------~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~---L--~~L~~L~Ls~  277 (313)
T d1ogqa_         222 NTQKIHLAKNSLAFD-------L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQ---L--KFLHSLNVSF  277 (313)
T ss_dssp             CCSEEECCSSEECCB-------G-GGCCCCTTCCEEECCSSCCEECCCGGGGG---C--TTCCEEECCS
T ss_pred             ccccccccccccccc-------c-cccccccccccccCccCeecccCChHHhC---C--CCCCEEECcC
Confidence            677766543221100       0 11345788889998776654 34322111   1  1688888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0071  Score=56.73  Aligned_cols=56  Identities=18%  Similarity=0.207  Sum_probs=30.7

Q ss_pred             ceeEEEeeeeeeCCCC----CCCCCccceEEeccEeechhHH---HHHHhcCCCceEEeeccc
Q 047476          152 GLESLELFSCNINASR----FNNFIALKELSLGWIQLSVQSI---RELLVQCPFLESLSLKKC  207 (463)
Q Consensus       152 ~L~~L~L~~~~~~~~~----~~~l~~L~~L~L~~~~~~~~~l---~~lls~cp~Le~L~l~~c  207 (463)
                      +|++|++++..+.+..    +..+++||+|.|.++.+++.++   ...+..||.|++|+|.++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN   65 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence            4566666655554321    1245666666666666654433   333456666666666655

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0041  Score=58.45  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=17.0

Q ss_pred             ccceEEeccEeechhHHHHHHhcCCCceEEeeccc
Q 047476          173 ALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKC  207 (463)
Q Consensus       173 ~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c  207 (463)
                      +|++|++++..+++.++..++..++.|+.|+|.+|
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~   37 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC   37 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC
Confidence            34444444444444444444444455555555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0045  Score=54.54  Aligned_cols=57  Identities=12%  Similarity=-0.053  Sum_probs=30.4

Q ss_pred             CCceEEEEecccce----eeeecCCCccEEEEeeecCCCCchhHHHHHHHHhhcCccceEEEEecccc
Q 047476          242 PNLRFWKYSGTEGM----FRVERQNFLTEVELDFALQPDFDEEIGEFLYELLRQLEIVRVLTVCSFLL  305 (463)
Q Consensus       242 P~L~~l~~~g~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ll~~l~~l~~L~l~~~~~  305 (463)
                      ++|+.+.+.+....    ..+..+++|+.+.+....-...       ....+..+++++.|.+++..+
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~-------~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL-------PTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC-------CHHHHTTCTTCCEEECCSSCE
T ss_pred             cccchhhhhhccccccChhHhhhhhhcccccccccccccc-------cccccccccccCEEEecCCCC
Confidence            44555554443221    1245566777766653322111       113466788999999877543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.37  E-value=0.0095  Score=47.71  Aligned_cols=23  Identities=17%  Similarity=0.121  Sum_probs=18.6

Q ss_pred             hhhHHHHhhhcCCCcceEEEEcC
Q 047476          336 EYYGINFMLKSCPSLQTLTINIG  358 (463)
Q Consensus       336 ~~~~l~~lL~~~P~L~~L~l~~~  358 (463)
                      ....++..|+.+++|++|+++..
T Consensus       120 ~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         120 VEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHhCCCcCEEeCcCC
Confidence            34678899999999999998543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.99  E-value=0.0081  Score=49.43  Aligned_cols=83  Identities=19%  Similarity=0.125  Sum_probs=56.4

Q ss_pred             ccCCCceeEEEeeeeeeC---CCCCCCCCccceEEeccEeechhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCC
Q 047476          147 VYGHVGLESLELFSCNIN---ASRFNNFIALKELSLGWIQLSVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLR  221 (463)
Q Consensus       147 l~~~~~L~~L~L~~~~~~---~~~~~~l~~L~~L~L~~~~~~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~  221 (463)
                      +...++|++|+|+++.+.   +..+..+++|++|+|++..+..-. ...+.+.+.|++|+|.+.. +..+.-  -...++
T Consensus        50 f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~  127 (192)
T d1w8aa_          50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNS  127 (192)
T ss_dssp             GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTT
T ss_pred             cCCCceEeeeeccccccccccccccccccccceeeeccccccccC-HHHHhCCCcccccccCCcc-ccccCHHHhcCCcc
Confidence            345789999999988653   456778999999999988653211 1235789999999999876 444432  123345


Q ss_pred             ccEEEEecCC
Q 047476          222 LKRLVIDKCD  231 (463)
Q Consensus       222 L~~L~i~~c~  231 (463)
                      |++|.+.+.+
T Consensus       128 L~~l~L~~N~  137 (192)
T d1w8aa_         128 LTSLNLASNP  137 (192)
T ss_dssp             CCEEECTTCC
T ss_pred             cccccccccc
Confidence            6666555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.82  E-value=0.034  Score=49.81  Aligned_cols=131  Identities=23%  Similarity=0.221  Sum_probs=81.0

Q ss_pred             HhCCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeC-CCCCCCCCccceEEeccEeechhHHHH
Q 047476          113 IARDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNIN-ASRFNNFIALKELSLGWIQLSVQSIRE  191 (463)
Q Consensus       113 ~~~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~l~~  191 (463)
                      ...++++|++.-.             ....+|..   .++|++|.|+++.+. .+  ..+.+|++|++.+..++.  +  
T Consensus        36 ~~~~l~~LdLs~~-------------~L~~lp~~---~~~L~~L~Ls~N~l~~lp--~~~~~L~~L~l~~n~l~~--l--   93 (353)
T d1jl5a_          36 LDRQAHELELNNL-------------GLSSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA--L--   93 (353)
T ss_dssp             HHHTCSEEECTTS-------------CCSCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC--C--
T ss_pred             HHcCCCEEEeCCC-------------CCCCCCCC---CCCCCEEECCCCCCcccc--cchhhhhhhhhhhcccch--h--
Confidence            3457888877421             12356643   357999999988775 22  236789999999876532  1  


Q ss_pred             HHhcC-CCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEEECCCceEEEEecccce--eeeecCCCccEEE
Q 047476          192 LLVQC-PFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEIAAPNLRFWKYSGTEGM--FRVERQNFLTEVE  268 (463)
Q Consensus       192 lls~c-p~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i~aP~L~~l~~~g~~~~--~~~~~~~~L~~l~  268 (463)
                        ... +.|+.|++.++. +..+.....+++|+.|.+.++..  .......+.+..+........  ..+..++.++.+.
T Consensus        94 --~~lp~~L~~L~L~~n~-l~~lp~~~~l~~L~~L~l~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~  168 (353)
T d1jl5a_          94 --SDLPPLLEYLGVSNNQ-LEKLPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIY  168 (353)
T ss_dssp             --CSCCTTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSSCC--SCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEE
T ss_pred             --hhhccccccccccccc-cccccchhhhccceeeccccccc--cccccccccccchhhccccccccccccccccceecc
Confidence              223 469999999876 44444345567999999988763  233333566666665543321  2344455566665


Q ss_pred             Ee
Q 047476          269 LD  270 (463)
Q Consensus       269 l~  270 (463)
                      +.
T Consensus       169 l~  170 (353)
T d1jl5a_         169 AD  170 (353)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.71  E-value=0.035  Score=49.70  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=68.7

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeCCCCCCCC-CccceEEeccEeechhHHHHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINASRFNNF-IALKELSLGWIQLSVQSIRELL  193 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~l~~ll  193 (463)
                      .+++.|++....             ...+|..   ..+|++|++.++.+..  +..+ +.|++|++++..+..  +.. .
T Consensus        58 ~~L~~L~Ls~N~-------------l~~lp~~---~~~L~~L~l~~n~l~~--l~~lp~~L~~L~L~~n~l~~--lp~-~  116 (353)
T d1jl5a_          58 PHLESLVASCNS-------------LTELPEL---PQSLKSLLVDNNNLKA--LSDLPPLLEYLGVSNNQLEK--LPE-L  116 (353)
T ss_dssp             TTCSEEECCSSC-------------CSSCCCC---CTTCCEEECCSSCCSC--CCSCCTTCCEEECCSSCCSS--CCC-C
T ss_pred             CCCCEEECCCCC-------------Ccccccc---hhhhhhhhhhhcccch--hhhhcccccccccccccccc--ccc-h
Confidence            467888775321             2245643   3589999999886652  1223 469999999887642  111 3


Q ss_pred             hcCCCceEEeecccCCCceeecccCCCCccEEEEecCCCCceeEEE-ECCCceEEEEeccc
Q 047476          194 VQCPFLESLSLKKCWEIEYLDITVPNLRLKRLVIDKCDFNQYRYEI-AAPNLRFWKYSGTE  253 (463)
Q Consensus       194 s~cp~Le~L~l~~c~~~~~~~i~~~~~~L~~L~i~~c~~~~~~~~i-~aP~L~~l~~~g~~  253 (463)
                      ..++.|+.|++.++....... .  ...+..|.+..+.. .....+ ..+.++.+...+..
T Consensus       117 ~~l~~L~~L~l~~~~~~~~~~-~--~~~l~~l~~~~~~~-~~~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         117 QNSSFLKIIDVDNNSLKKLPD-L--PPSLEFIAAGNNQL-EELPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             TTCTTCCEEECCSSCCSCCCC-C--CTTCCEEECCSSCC-SSCCCCTTCTTCCEEECCSSC
T ss_pred             hhhccceeecccccccccccc-c--cccccchhhccccc-cccccccccccceeccccccc
Confidence            578999999999876332221 1  23777787766552 111111 24667777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.39  E-value=0.012  Score=47.25  Aligned_cols=17  Identities=6%  Similarity=0.002  Sum_probs=9.7

Q ss_pred             HHHHHhhcCccceEEEE
Q 047476          284 FLYELLRQLEIVRVLTV  300 (463)
Q Consensus       284 ~~~~ll~~l~~l~~L~l  300 (463)
                      .+...+..-++++.|.+
T Consensus       122 ~l~~~L~~n~sL~~l~l  138 (167)
T d1pgva_         122 DMMMAIEENESLLRVGI  138 (167)
T ss_dssp             HHHHHHHHCSSCCEEEC
T ss_pred             HHHHHHHhCCCccEeeC
Confidence            34555555666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=93.93  E-value=0.0041  Score=51.68  Aligned_cols=100  Identities=18%  Similarity=0.147  Sum_probs=69.6

Q ss_pred             CCCeEEEEeecCCCCCCCCCCCCccceeCCcCccCCCceeEEEeeeeeeCC-CCC-CCCCccceEEeccEeechhHHHHH
Q 047476          115 RDVKELALDFHDPLWPEHGSENHEAVFDLPMHVYGHVGLESLELFSCNINA-SRF-NNFIALKELSLGWIQLSVQSIREL  192 (463)
Q Consensus       115 ~~v~~L~l~~~~~~~~~~~~~~~~~~~~lp~~l~~~~~L~~L~L~~~~~~~-~~~-~~l~~L~~L~L~~~~~~~~~l~~l  192 (463)
                      .+++.|++....             ...++ .+..+++|++|+|++|.+.. +.+ ..+++|+.|++.+..++.  +. -
T Consensus        48 ~~L~~L~Ls~n~-------------I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~-~  110 (198)
T d1m9la_          48 KACKHLALSTNN-------------IEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-G  110 (198)
T ss_dssp             TTCCEEECSEEE-------------ESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HH-H
T ss_pred             cccceeECcccC-------------CCCcc-cccCCccccChhhcccccccccccccccccccccccccccccc--cc-c
Confidence            578888875321             12344 36678899999999998763 332 346789999999988753  32 2


Q ss_pred             HhcCCCceEEeecccCC--CceeecccCCCCccEEEEecCC
Q 047476          193 LVQCPFLESLSLKKCWE--IEYLDITVPNLRLKRLVIDKCD  231 (463)
Q Consensus       193 ls~cp~Le~L~l~~c~~--~~~~~i~~~~~~L~~L~i~~c~  231 (463)
                      +.+++.|+.|++.++.-  +..+..-..+++|+.|.+.+++
T Consensus       111 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             ccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            56789999999998752  2222223457799999999876

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.38  E-value=0.019  Score=45.38  Aligned_cols=77  Identities=19%  Similarity=0.120  Sum_probs=50.1

Q ss_pred             CceeEEEeeeeeeC--CCCCCCCCccceEEeccEe-e---chhHHHHHHhcCCCceEEeecccCCCceeec--ccCCCCc
Q 047476          151 VGLESLELFSCNIN--ASRFNNFIALKELSLGWIQ-L---SVQSIRELLVQCPFLESLSLKKCWEIEYLDI--TVPNLRL  222 (463)
Q Consensus       151 ~~L~~L~L~~~~~~--~~~~~~l~~L~~L~L~~~~-~---~~~~l~~lls~cp~Le~L~l~~c~~~~~~~i--~~~~~~L  222 (463)
                      .....++..+..+.  +..+.++++|++|++.+.. +   +.++    +.+.+.|+.|.+.++. +..+.-  -..+++|
T Consensus         8 ~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~----f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L   82 (156)
T d2ifga3           8 HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRD----LRGLGELRNLTIVKSG-LRFVAPDAFHFTPRL   82 (156)
T ss_dssp             SSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGG----SCSCCCCSEEECCSSC-CCEECTTGGGSCSCC
T ss_pred             CCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchh----hccccccCcceeeccc-cCCcccccccccccc
Confidence            34455555554432  4456678999999997542 3   3333    4678999999999875 555432  2345688


Q ss_pred             cEEEEecCCC
Q 047476          223 KRLVIDKCDF  232 (463)
Q Consensus       223 ~~L~i~~c~~  232 (463)
                      +.|.++++.+
T Consensus        83 ~~L~Ls~N~l   92 (156)
T d2ifga3          83 SRLNLSFNAL   92 (156)
T ss_dssp             CEEECCSSCC
T ss_pred             cceeccCCCC
Confidence            8888887763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.47  E-value=0.032  Score=44.43  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=20.3

Q ss_pred             CCccceEEeccE-eechhHHHHH---HhcCCCceEEeecccC
Q 047476          171 FIALKELSLGWI-QLSVQSIREL---LVQCPFLESLSLKKCW  208 (463)
Q Consensus       171 l~~L~~L~L~~~-~~~~~~l~~l---ls~cp~Le~L~l~~c~  208 (463)
                      .|.|++|+|.++ .+++.++..+   +..++.|++|++.+|.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~   57 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   57 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc
Confidence            455566666553 2444443333   3356666666666663

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.74  E-value=0.053  Score=42.89  Aligned_cols=56  Identities=23%  Similarity=0.148  Sum_probs=28.9

Q ss_pred             CCceeEEEeeeeeeCC-CC----CCCCCccceEEeccEeec-hhHHHHHHhcCCCceEEeeccc
Q 047476          150 HVGLESLELFSCNINA-SR----FNNFIALKELSLGWIQLS-VQSIRELLVQCPFLESLSLKKC  207 (463)
Q Consensus       150 ~~~L~~L~L~~~~~~~-~~----~~~l~~L~~L~L~~~~~~-~~~l~~lls~cp~Le~L~l~~c  207 (463)
                      +++|++|+|+++.+.. +.    +..+++|+.|+|++..++ -..+.. + +.+.|+.|.+.+.
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~-l-~~~~L~~L~L~~N  125 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-I-KGLKLEELWLDGN  125 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHH-H-TTCCCSSCCCTTS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhh-h-hccccceeecCCC
Confidence            4566666666665532 11    124666666666666553 233332 2 2334666666654