Citrus Sinensis ID: 047507

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
Protein Sequence
MSKNPSQDDNEAFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAVEKGYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLPSQKQTKFEFHSQVGVNA
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHcccccccccccEEcccccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHcHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHcEEEEcccccccccccHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msknpsqddneaFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLdyravekgyrvpgkserfkwlkvdgalmvdKTRVEFLsengsgcdlfdgdwvwdekyplyqskdcrfldegfrctengrpdlfytkwrwqpkycnlpsqkqtkfEFHSQVGVNA
Flexible Loop (DISEMBL)
msknpsqddneaFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAVEkgyrvpgkserfkwlkvdgalMVDKTRVEFlsengsgcdlfdgDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNlpsqkqtkfefhsqvgvna
Low Complexity Region (SEG)
MSKNPSQDDNEAFQSYDFLKKFKRLRLIEPYVGVLGfffvtvcvivcfcYLDYRAVEKGYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLPSQKQTKFEFHSQVGVNA
Disordered region (IsUnstruct)
************FQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAVEKGYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP*****************
Disordered Region (DISOPRED)
*****************************PYVGVLGFFFVTVCVIVCFCYLDY******************************************DLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLPSQKQTKFEFHSQVG***
Disordered Region (DISEMBL)
**********EAFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAVEKGYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLPSQKQTKFEF********
Disordered Region (DISPRO)
***********AFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAVEK*YR********************************GCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLPSQKQTKFEFHSQVG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSKNPSQDDNEAFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAVEKGYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLPSQKQTKFEFHSQVGVNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
255552277	453	conserved hypothetical protein [Ricinus	0.884	0.322	0.704	2e-57
224100341	339	predicted protein [Populus trichocarpa]	0.884	0.430	0.721	2e-55
225432554	446	PREDICTED: uncharacterized protein LOC10	0.884	0.327	0.662	5e-53
15239660	464	protein trichome birefringence-like 11 [	0.896	0.318	0.625	2e-47
297807965	464	hypothetical protein ARALYDRAFT_351018 [	0.896	0.318	0.631	6e-47
449463090	441	PREDICTED: uncharacterized protein LOC10	0.884	0.331	0.594	4e-46
42572279	469	uncharacterized protein [Arabidopsis tha	0.896	0.315	0.583	7e-45
18397465	346	uncharacterized protein [Arabidopsis tha	0.896	0.427	0.583	2e-44
297833352	465	hypothetical protein ARALYDRAFT_896718 [	0.896	0.318	0.580	6e-44
356520041	451	PREDICTED: uncharacterized protein LOC10	0.836	0.305	0.611	3e-43

>gi|255552277|ref|XP_002517183.1| conserved hypothetical protein [Ricinus communis] gi|223543818|gb|EEF45346.1| conserved hypothetical protein [Ricinus communis]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 122/149 (81%), Gaps = 3/149 (2%)

Query: 1   MSKNPSQDDNEAFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYR-AVEKG 59
           MSKNPSQ ++E  Q ++  KKFKRLRL EP VGVLGFF VTVCVI CF Y D+R A+ KG
Sbjct: 1   MSKNPSQQEHEPMQVFEIFKKFKRLRLFEPSVGVLGFFLVTVCVICCFFYFDFRDAITKG 60

Query: 60  YRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFL 119
           Y+VPGKSER+ WL+ + +  +   RVEFL + G GCD+FDG+WVWD+ YPLYQSKDC FL
Sbjct: 61  YKVPGKSERYMWLQFNESSPI--RRVEFLGQEGDGCDVFDGEWVWDDNYPLYQSKDCSFL 118

Query: 120 DEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
           DEGFRCTENGRPDLFYTKWRWQPK+CNLP
Sbjct: 119 DEGFRCTENGRPDLFYTKWRWQPKFCNLP 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224100341|ref|XP_002311838.1| predicted protein [Populus trichocarpa] gi|222851658|gb|EEE89205.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (559), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 109/151 (72%), Positives = 121/151 (80%), Gaps = 5/151 (3%)

Query: 1   MSKNPSQDDNEAFQSYDFLKKFKR--LRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAV-E 57
           MSKN S  +NE  Q ++  KKFKR  LR  EP +GVLGFFFVTVCVI  F YLDYRAV  
Sbjct: 1   MSKNSSYRENETMQLFEIFKKFKRFQLRFFEPSLGVLGFFFVTVCVIFSFFYLDYRAVIV 60

Query: 58  KGYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCR 117
           K + VPGKSERF WL+++G+      RVEFL E G+GCDLFDGDWVWDEKYPLYQSKDC 
Sbjct: 61  KEFIVPGKSERFMWLQLNGS--GKNKRVEFLEEEGNGCDLFDGDWVWDEKYPLYQSKDCS 118

Query: 118 FLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
           FLD+GFRCTENGRPDLFYTKWRWQPK+CNLP
Sbjct: 119 FLDQGFRCTENGRPDLFYTKWRWQPKHCNLP 149

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432554|ref|XP_002280710.1| PREDICTED: uncharacterized protein LOC100261302 [Vitis vinifera] gi|297736996|emb|CBI26197.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 114/148 (77%), Gaps = 2/148 (1%)

Query: 1   MSKNPSQDDNEAFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAVEKGY 60
           MSK PSQ D+E    +D  KKFKR RL+EP VGVLGFFFVTV VI CF YLDYRA  KG+
Sbjct: 1   MSKTPSQQDHEILPFFDVFKKFKRFRLLEPSVGVLGFFFVTVSVICCFFYLDYRAAAKGF 60

Query: 61  RVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLD 120
               +SERF W +  G+   +  RV+FL+E G GCD+F+G WVWDE YPLYQSKDC F+D
Sbjct: 61  LFSSQSERFMWFRFGGS--SEDRRVDFLAEQGDGCDVFNGGWVWDEAYPLYQSKDCSFMD 118

Query: 121 EGFRCTENGRPDLFYTKWRWQPKYCNLP 148
           +GFRC+ENGRPD+FYTKWRWQPK CNLP
Sbjct: 119 DGFRCSENGRPDMFYTKWRWQPKDCNLP 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239660|ref|NP_197417.1| protein trichome birefringence-like 11 [Arabidopsis thaliana] gi|60547899|gb|AAX23913.1| hypothetical protein At5g19160 [Arabidopsis thaliana] gi|71905561|gb|AAZ52758.1| expressed protein [Arabidopsis thaliana] gi|71905563|gb|AAZ52759.1| expressed protein [Arabidopsis thaliana] gi|332005280|gb|AED92663.1| protein trichome birefringence-like 11 [Arabidopsis thaliana]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/152 (62%), Positives = 115/152 (75%), Gaps = 4/152 (2%)

Query: 1   MSKNPSQDDNEAFQ-SYDFLKKFKRLRLI-EPYVGVLGFFFVTVCVIVCFCYLDYRAVEK 58
           MSKNPSQ+++EA   S   +K+FKRLRL+ EP +GVLGFF V +C++  F YLDYR V K
Sbjct: 1   MSKNPSQEEDEAMPISEVVIKRFKRLRLVFEPSLGVLGFFLVGLCLVFSFFYLDYRTVAK 60

Query: 59  --GYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDC 116
              +    +SERF WLK      V+ T+V FL E+G+GCDLF+G WVWDE YPLYQSKDC
Sbjct: 61  TKSHDFSDQSERFLWLKELDGFEVNNTKVGFLEESGNGCDLFNGKWVWDESYPLYQSKDC 120

Query: 117 RFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
            F+DEGFRCTE GRPDLFYTKWRWQP +C+LP
Sbjct: 121 TFIDEGFRCTEFGRPDLFYTKWRWQPNHCDLP 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807965|ref|XP_002871866.1| hypothetical protein ARALYDRAFT_351018 [Arabidopsis lyrata subsp. lyrata] gi|297317703|gb|EFH48125.1| hypothetical protein ARALYDRAFT_351018 [Arabidopsis lyrata subsp. lyrata]

 Score =  192 bits (487), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 96/152 (63%), Positives = 114/152 (75%), Gaps = 4/152 (2%)

Query: 1   MSKNPSQDDNEAFQ-SYDFLKKFKRLRLI-EPYVGVLGFFFVTVCVIVCFCYLDYRAVEK 58
           MSKNPSQ+D+EA   S   +K+FKRLRL+ EP +GVLGFF V +C++  F YLDYR V K
Sbjct: 1   MSKNPSQEDDEAMPISEVVIKRFKRLRLVFEPSLGVLGFFLVGLCLVFSFFYLDYRTVAK 60

Query: 59  --GYRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDC 116
              +    +SERF WLK     + + T+V FL E+G+GCDLFDG WVWDE YPLYQSKDC
Sbjct: 61  TKSHDFSDQSERFLWLKELDGFVDNNTKVGFLEESGNGCDLFDGKWVWDESYPLYQSKDC 120

Query: 117 RFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
            FLDEGFRCTE GR DLFYTKWRWQP +C+LP
Sbjct: 121 TFLDEGFRCTEFGRLDLFYTKWRWQPNHCDLP 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463090|ref|XP_004149267.1| PREDICTED: uncharacterized protein LOC101220391 [Cucumis sativus]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 88/148 (59%), Positives = 107/148 (72%), Gaps = 2/148 (1%)

Query: 1   MSKNPSQDDNEAFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLDYRAVEKGY 60
           MSK P+  D EA    +   K KR RL EP +GV GFFFV+VC+I  F +LDYR   KG+
Sbjct: 1   MSKTPTVIDLEAMPFSEVCNKLKRFRLFEPSLGVFGFFFVSVCLICSFFFLDYRTASKGF 60

Query: 61  RVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLD 120
             P +SE F WL+   A +    + +FLSE G+GCDLFDG+WVWD+ YPLY+SK C F+D
Sbjct: 61  VFPLRSESFVWLR--NANLGQNRKFDFLSEEGNGCDLFDGNWVWDDSYPLYESKSCPFVD 118

Query: 121 EGFRCTENGRPDLFYTKWRWQPKYCNLP 148
           +GFRC+ENGRPDLFYTKWRWQPK CNLP
Sbjct: 119 QGFRCSENGRPDLFYTKWRWQPKLCNLP 146

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572279|ref|NP_974235.1| uncharacterized protein [Arabidopsis thaliana] gi|6862912|gb|AAF30301.1|AC018907_1 unknown protein [Arabidopsis thaliana] gi|7658346|gb|AAF66136.1| unknown protein; 23105-20540 [Arabidopsis thaliana] gi|332640820|gb|AEE74341.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  185 bits (469), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 113/156 (72%), Gaps = 8/156 (5%)

Query: 1   MSKNPSQDDNEAFQSY-DFLKKFKRLRLI-EPYVGVLGFFFVTVCVIVCFCYLDYRAVEK 58
           MSKN + ++N   +   + L++FKR RL+ EP +GVLGFF V VC++  F + DYR+V K
Sbjct: 1   MSKNSNVEENGGAKPICEALRRFKRSRLVFEPSLGVLGFFLVGVCLVCSFFFFDYRSVAK 60

Query: 59  GYRVPGKSERFKWLKVDGALMVDKT------RVEFLSENGSGCDLFDGDWVWDEKYPLYQ 112
            Y +  KSERF WLK D       +      RV FL E+GSGCD+FDGDWVWDE YPLYQ
Sbjct: 61  SYGLSDKSERFVWLKFDNISSSSSSSSNSSKRVGFLEESGSGCDVFDGDWVWDESYPLYQ 120

Query: 113 SKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
           SKDCRFLDEGFRC++ GR DLFYT+WRWQP++CNLP
Sbjct: 121 SKDCRFLDEGFRCSDFGRSDLFYTQWRWQPRHCNLP 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18397465|ref|NP_566270.1| uncharacterized protein [Arabidopsis thaliana] gi|16648935|gb|AAL24319.1| unknown protein [Arabidopsis thaliana] gi|30984570|gb|AAP42748.1| At3g06080 [Arabidopsis thaliana] gi|332640819|gb|AEE74340.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/156 (58%), Positives = 113/156 (72%), Gaps = 8/156 (5%)

Query: 1   MSKNPSQDDNEAFQSY-DFLKKFKRLRLI-EPYVGVLGFFFVTVCVIVCFCYLDYRAVEK 58
           MSKN + ++N   +   + L++FKR RL+ EP +GVLGFF V VC++  F + DYR+V K
Sbjct: 1   MSKNSNVEENGGAKPICEALRRFKRSRLVFEPSLGVLGFFLVGVCLVCSFFFFDYRSVAK 60

Query: 59  GYRVPGKSERFKWLKVDGALMVDKT------RVEFLSENGSGCDLFDGDWVWDEKYPLYQ 112
            Y +  KSERF WLK D       +      RV FL E+GSGCD+FDGDWVWDE YPLYQ
Sbjct: 61  SYGLSDKSERFVWLKFDNISSSSSSSSNSSKRVGFLEESGSGCDVFDGDWVWDESYPLYQ 120

Query: 113 SKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
           SKDCRFLDEGFRC++ GR DLFYT+WRWQP++CNLP
Sbjct: 121 SKDCRFLDEGFRCSDFGRSDLFYTQWRWQPRHCNLP 156

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833352|ref|XP_002884558.1| hypothetical protein ARALYDRAFT_896718 [Arabidopsis lyrata subsp. lyrata] gi|297330398|gb|EFH60817.1| hypothetical protein ARALYDRAFT_896718 [Arabidopsis lyrata subsp. lyrata]

 Score =  181 bits (460), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 90/155 (58%), Positives = 114/155 (73%), Gaps = 7/155 (4%)

Query: 1   MSKNPSQDDNEAFQSY-DFLKKFKRLRLI-EPYVGVLGFFFVTVCVIVCFCYLDYRAVEK 58
           MSKN + ++N   +   + LK+FKR RL+ EP +GVLGFF V VC++  F   DYR V K
Sbjct: 1   MSKNSNLEENGGAKPICEALKRFKRSRLVFEPSLGVLGFFLVGVCLVCSFFLFDYRNVAK 60

Query: 59  GYRVPGKSERFKWLKVDGALMVDKT-----RVEFLSENGSGCDLFDGDWVWDEKYPLYQS 113
            Y +  KS+RF WLK+D  +  + +     RV FL E+G+GCD+FDGDWVWDE YPLYQS
Sbjct: 61  SYGLSDKSDRFVWLKLDNNISSNTSSNSSKRVGFLEESGNGCDVFDGDWVWDESYPLYQS 120

Query: 114 KDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
           KDCRFLDEGFRC++ GR DLFYT+WRWQP++CNLP
Sbjct: 121 KDCRFLDEGFRCSDFGRSDLFYTQWRWQPRHCNLP 155

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520041|ref|XP_003528674.1| PREDICTED: uncharacterized protein LOC100785144 [Glycine max]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 105/144 (72%), Gaps = 6/144 (4%)

Query: 7   QDDNEAFQSYDFLKKFKRLRLIEPYVGVLGFFFVTVCVIVCFCYLD--YRAVEKGYRVPG 64
           Q + E+   ++ ++K KRLRL EP +GVLGF  VTV VI CF Y D  Y A   G+    
Sbjct: 10  QHEAESMSVFEAIRKAKRLRLFEPSLGVLGFVVVTVFVICCFFYSDNGYLASRVGFF--E 67

Query: 65  KSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFR 124
           + +RF WL+++G+      RVEFL E G GCDLFDG+W+WDE YPLYQSKDCRFLDEGFR
Sbjct: 68  QPQRFAWLRIEGS--TAPPRVEFLGEKGGGCDLFDGEWIWDESYPLYQSKDCRFLDEGFR 125

Query: 125 CTENGRPDLFYTKWRWQPKYCNLP 148
           C+ENGR DLFYTKWRWQPK CNLP
Sbjct: 126 CSENGRRDLFYTKWRWQPKGCNLP 149

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	165
TAIR|locus:2182157	464	TBL11 "TRICHOME BIREFRINGENCE-	0.890	0.316	0.601	7.1e-45
TAIR|locus:2080389	469	TBL10 "TRICHOME BIREFRINGENCE-	0.896	0.315	0.544	6.6e-42
TAIR|locus:2028533	445	TBL7 "AT1G48880" [Arabidopsis	0.496	0.184	0.426	1.5e-15
TAIR|locus:2045688	398	TBL45 "AT2G30010" [Arabidopsis	0.393	0.163	0.537	8.3e-15
TAIR|locus:2170184	608	TBR [Arabidopsis thaliana (tax	0.406	0.110	0.462	2.1e-14
TAIR|locus:2096094	475	TBL6 "AT3G62390" [Arabidopsis	0.363	0.126	0.516	3.5e-14
TAIR|locus:2088659	556	TBL1 "AT3G12060" [Arabidopsis	0.406	0.120	0.447	3.8e-14
TAIR|locus:2099402	356	TBL41 "TRICHOME BIREFRINGENCE-	0.363	0.168	0.533	4.4e-14
TAIR|locus:2057145	410	TBL34 "AT2G38320" [Arabidopsis	0.393	0.158	0.469	8.8e-14
TAIR|locus:2065069	424	TBL28 "TRICHOME BIREFRINGENCE-	0.327	0.127	0.545	9.5e-14

TAIR|locus:2182157 TBL11 "TRICHOME BIREFRINGENCE-LIKE 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 92/153 (60%), Positives = 110/153 (71%)

Query:     1 MSKNPSQDDNEAFQ-SYDFLKKFKRLRLI-EPYVGVLGXXXXXXXXXXXXXYLDYRAVEK 58
             MSKNPSQ+++EA   S   +K+FKRLRL+ EP +GVLG             YLDYR V K
Sbjct:     1 MSKNPSQEEDEAMPISEVVIKRFKRLRLVFEPSLGVLGFFLVGLCLVFSFFYLDYRTVAK 60

Query:    59 --GYRVPGKSERFKWLK-VDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKD 115
                +    +SERF WLK +DG   V+ T+V FL E+G+GCDLF+G WVWDE YPLYQSKD
Sbjct:    61 TKSHDFSDQSERFLWLKELDG-FEVNNTKVGFLEESGNGCDLFNGKWVWDESYPLYQSKD 119

Query:   116 CRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
             C F+DEGFRCTE GRPDLFYTKWRWQP +C+LP
Sbjct:   120 CTFIDEGFRCTEFGRPDLFYTKWRWQPNHCDLP 152

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080389 TBL10 "TRICHOME BIREFRINGENCE-LIKE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 85/156 (54%), Positives = 105/156 (67%)

Query:     1 MSKNPSQDDNEAFQSY-DFLKKFKRLRLI-EPYVGVLGXXXXXXXXXXXXXYLDYRAVEK 58
             MSKN + ++N   +   + L++FKR RL+ EP +GVLG             + DYR+V K
Sbjct:     1 MSKNSNVEENGGAKPICEALRRFKRSRLVFEPSLGVLGFFLVGVCLVCSFFFFDYRSVAK 60

Query:    59 GYRVPGKSERFKWLKVDGALMVDKT------RVEFLSENGSGCDLFDGDWVWDEKYPLYQ 112
              Y +  KSERF WLK D       +      RV FL E+GSGCD+FDGDWVWDE YPLYQ
Sbjct:    61 SYGLSDKSERFVWLKFDNISSSSSSSSNSSKRVGFLEESGSGCDVFDGDWVWDESYPLYQ 120

Query:   113 SKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
             SKDCRFLDEGFRC++ GR DLFYT+WRWQP++CNLP
Sbjct:   121 SKDCRFLDEGFRCSDFGRSDLFYTQWRWQPRHCNLP 156

GO:0005634 "nucleus" evidence=ISM

GO:0007623 "circadian rhythm" evidence=IEP

TAIR|locus:2028533 TBL7 "AT1G48880" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 1.5e-15, P = 1.5e-15
 Identities = 38/89 (42%), Positives = 54/89 (60%)

Query:    60 YRVPGKSERFKWLKVDGALMVDKTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFL 119
             Y VP   + F  L  +GAL  + + V       + CD+FDG+WV D+ YPLY + +C F+
Sbjct:    87 YVVPSLGQTF--LGYNGALEFNSSVV-----GDTECDIFDGNWVVDDNYPLYNASECPFV 139

Query:   120 DEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
             ++GF C  NGR    Y KWRW+PK+C +P
Sbjct:   140 EKGFNCLGNGRGHDEYLKWRWKPKHCTVP 168

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045688 TBL45 "AT2G30010" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 8.3e-15, P = 8.3e-15
 Identities = 36/67 (53%), Positives = 43/67 (64%)

Query:    91 NGSGCDLFDGDWVWDEKYPLYQSKDCR--FLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
             N S CDLF G+WV DE YPLY+SK+C    +D GF C   GRPD  Y K+RW+P  CN+P
Sbjct:    52 NHSSCDLFAGEWVRDETYPLYRSKECGRGIIDPGFDCQTYGRPDSDYLKFRWKPFNCNVP 111

Query:   149 SQKQTKF 155
                  KF
Sbjct:   112 RFNGVKF 118

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170184 TBR [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 31/67 (46%), Positives = 43/67 (64%)

Query:    82 KTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQ 141
             K  +E  SE+   C+ FDG+W+ D+ YPLY+   C  +DE F C  NGRPD  + K +W+
Sbjct:   242 KQEIEKWSESLKNCEFFDGEWIKDDSYPLYKPGSCNLIDEQFNCITNGRPDKDFQKLKWK 301

Query:   142 PKYCNLP 148
             PK C+LP
Sbjct:   302 PKKCSLP 308

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0030244 "cellulose biosynthetic process" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=IMP

GO:0045489 "pectin biosynthetic process" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2096094 TBL6 "AT3G62390" [Arabidopsis thaliana (taxid:3702)]

 Score = 190 (71.9 bits), Expect = 3.5e-14, P = 3.5e-14
 Identities = 31/60 (51%), Positives = 38/60 (63%)

Query:    95 CDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLPSQKQTK 154
             CD+  G WV+D  YPLY +  C F+DEGF C  NGR DL Y  WRW+P+ C+ P    TK
Sbjct:   138 CDVTKGKWVYDSDYPLYTNASCPFIDEGFGCQSNGRLDLNYMNWRWEPQDCHAPRFNATK 197

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2088659 TBL1 "AT3G12060" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 30/67 (44%), Positives = 44/67 (65%)

Query:    82 KTRVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQ 141
             K+ +  + E+   C+ F+GDWV D+ YPLY+   C  +DE F C  NGRPD+ + K +W+
Sbjct:   183 KSSLRKVIESLKSCEFFEGDWVKDDSYPLYKPGSCNLIDEQFNCISNGRPDVDFQKLKWK 242

Query:   142 PKYCNLP 148
             PK C+LP
Sbjct:   243 PKQCSLP 249

GO:0030244 "cellulose biosynthetic process" evidence=IMP

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

TAIR|locus:2099402 TBL41 "TRICHOME BIREFRINGENCE-LIKE 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 4.4e-14, P = 4.4e-14
 Identities = 32/60 (53%), Positives = 37/60 (61%)

Query:    88 LSENGSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNL 147
             L E   GCD+F G WV D+ YPLY S  C F+   F C  NGRPDL Y+ +RWQP  C L
Sbjct:    27 LHEAAEGCDMFTGRWVKDDSYPLYNSSTCPFIRHEFSCQRNGRPDLDYSTFRWQPLSCKL 86

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2057145 TBL34 "AT2G38320" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 8.8e-14, P = 8.8e-14
 Identities = 31/66 (46%), Positives = 43/66 (65%)

Query:    90 ENGSGCDLFDGDWVWDE-KYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
             ++G  C+LF+G WV+D   YPLY+ +DC+F+ +   C + GR DL Y  WRWQP  C+LP
Sbjct:    54 DSGRECNLFEGKWVFDNVSYPLYKEEDCKFMSDQLACEKFGRKDLSYKFWRWQPHTCDLP 113

Query:   149 SQKQTK 154
                 TK
Sbjct:   114 RFNGTK 119

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0042546 "cell wall biogenesis" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2065069 TBL28 "TRICHOME BIREFRINGENCE-LIKE 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 9.5e-14, P = 9.5e-14
 Identities = 30/55 (54%), Positives = 37/55 (67%)

Query:    95 CDLFDGDWVWDEK-YPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCNLP 148
             CDLF G WV+D K YPLY+ ++C FL E   C  NGR D  +  WRWQP+ C+LP
Sbjct:    71 CDLFTGQWVFDNKTYPLYKEEECEFLTEQVTCLRNGRKDSLFQNWRWQPRDCSLP 125

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_LG_VIII2656 hypothetical protein (339 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	165
pfam14416	55	pfam14416, PMR5N, PMR5 N terminal Domain	3e-27
PLN02629	387	PLN02629, PLN02629, powdery mildew resistance 5	2e-18

>gnl|CDD|206583 pfam14416, PMR5N, PMR5 N terminal Domain

 Score = 96.2 bits (240), Expect = 3e-27
 Identities = 31/55 (56%), Positives = 36/55 (65%)

Query: 92  GSGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCN 146
              CDLF G WV+D  YPLY +  C F+D GF C +NGRPD  Y KWRWQP  C+
Sbjct: 1   SEECDLFKGKWVFDPSYPLYTNSSCPFIDPGFNCQKNGRPDSDYLKWRWQPHGCD 55

The plant family with PMR5, ESK1, TBL3 etc have a N-terminal C rich predicted sugar binding domain followed by the PC-Esterase (acyl esterase) domain. Length = 55

>gnl|CDD|215338 PLN02629, PLN02629, powdery mildew resistance 5

 Score = 80.3 bits (198), Expect = 2e-18
 Identities = 35/66 (53%), Positives = 38/66 (57%), Gaps = 1/66 (1%)

Query: 84  RVEFLSENGSGCDLFDGDWVWDEKYPLYQSKDC-RFLDEGFRCTENGRPDLFYTKWRWQP 142
           R   L  N S C LF G WV D+ YPLYQS DC   +D  F C   GRPD  Y K+RWQP
Sbjct: 42  RRPSLQANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQP 101

Query: 143 KYCNLP 148
             C LP
Sbjct: 102 LNCELP 107

Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	165
PLN02629	387	powdery mildew resistance 5	99.97
PF14416	55	PMR5N: PMR5 N terminal Domain	99.97

>PLN02629 powdery mildew resistance 5

Probab=99.97  E-value=3.9e-33  Score=249.03  Aligned_cols=77  Identities=45%  Similarity=0.884  Sum_probs=73.1

Q ss_pred             cccCCCCccceeccEEeCCCCCCcCCCCCc-CccCCccccccCCCCCCCeeeeeecCCCCCCCCCHHHHHHHhccccC
Q 047507           88 LSENGSGCDLFDGDWVWDEKYPLYQSKDCR-FLDEGFRCTENGRPDLFYTKWRWQPKYCNLPSQKQTKFEFHSQVGVN  164 (165)
Q Consensus        88 ~~~~~~~CD~f~G~WV~D~s~PlY~~~~Cp-fI~~~~nC~~NGRPD~~YlkWRWqP~~CdLPRFda~~fL~~~~~~~~  164 (165)
                      +.++.+.||+|+|+||+|+++|+|++.+|| ||+++|||++|||||++|++|||||++|+||||||.+||+++|++-.
T Consensus        46 ~~~~~~~CD~f~G~WV~D~s~PlY~~~~Cp~fi~~~~nC~knGRPD~~Yl~WRWqP~gC~LPRFda~~fLe~~RgKrl  123 (387)
T PLN02629         46 LQANQSTCALFVGTWVRDDSYPLYQSSDCPGVIDPEFNCQMYGRPDSDYLKYRWQPLNCELPRFNGLEFLLKMKGKTV  123 (387)
T ss_pred             CCCCccccCCCCCeEecCCCCCCCCCCCCccccccccchhhcCCCCcchhhccccCCCCCCCCcCHHHHHHHhcCCeE
Confidence            456778999999999999999999999999 99999999999999999999999999999999999999999998743

>PF14416 PMR5N: PMR5 N terminal Domain

Probab=99.97  E-value=9.7e-32  Score=183.81  Aligned_cols=54  Identities=59%  Similarity=1.356  Sum_probs=52.9

Q ss_pred             CCccceeccEEeCCCCCCcCCCCCcCccCCccccccCCCCCCCeeeeeecCCCC
Q 047507           93 SGCDLFDGDWVWDEKYPLYQSKDCRFLDEGFRCTENGRPDLFYTKWRWQPKYCN  146 (165)
Q Consensus        93 ~~CD~f~G~WV~D~s~PlY~~~~CpfI~~~~nC~~NGRPD~~YlkWRWqP~~Cd  146 (165)
                      +.||+|+|+||+|+++|||++++||||+++|||++|||||++|++|||||++|+
T Consensus         2 ~~Cd~~~G~WV~D~~~PlY~~~~Cp~i~~~~nC~~nGRpD~~y~~wRWqP~~Cd   55 (55)
T PF14416_consen    2 KRCDYFDGRWVPDPSYPLYTNSTCPFIDEGFNCQKNGRPDSDYLKWRWQPRGCD   55 (55)
T ss_pred             CccCcccCEEEeCCCCCccCCCCCCcCCCccchhhcCCCCCccceeeecCCCCC
Confidence            589999999999999999999999999999999999999999999999999997

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00