Citrus Sinensis ID: 047550

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
Protein Sequence
MTLQQFHNSTSCHKRKMNSMTNHYKNTINANAPTIDSSMDMFAAVAHMGSLSASPRKNSGHIVTSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAANDLEPNINNVHDISSSSVSFLDSSSPRKPSFQAPIGYKSDDSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAGFSDTMASAASQVTITEPSASSSSSQSAAENKRGTSHLEATISPPFIDFLGVGA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHcccccHHHHHHHcccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHcccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHEEcccc
Coil and Loop (DISEMBL)
mtlqqfhnstschkrkMNSMTNHYKntinanaptidssMDMFAAVAHMgslsasprknsghivtsqnicycdssdhqksdlaaggdsdnnnkvdesvdgyedmedvkkmdgglskvcsrghwrpaedSKLKELVALYGPQNWNLIAEKlegrsgkscrlrwfnqldprinkrafsEDEEERLMAAHRVYGNKWAMIARlfpgrtdnavkNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAAndlepninnvhdissssvsfldsssprkpsfqapigyksddsfSQKSMQQWGMimkdgasftvsspythhhhhqqflmpmqhssnyhlsaaagfsdtmaSAASqvtitepsasssssqsaaenkrgtshleatisppfidflgvga
Flexible Loop (DISEMBL)
mtlqqfhnstschkrkMNSMTNHYKNTINANAPTIDSSMDMFAAVAHMGSLSASPRKNSGHIVTSQNICYCDSSDHQKSDlaaggdsdnnnkVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKlegrsgkscrlrwfnqldprinkrafsedeEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKyreqssayYRRRKFLNQVVDDKKLEAAVAAndlepninnvHDISSSSVSFLDSSSPRKPSFqapigyksddSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAGFSDTMASAASQVTITepsasssssqsaAENKRGtshleatisppfidflgvga
Low Complexity Region (SEG)
MTLQQFHNSTSCHKRKMNSMTNHYKNTINANAPTIDSSMDMFAAVAHMGSLSASPRKNSGHIVTSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAANDLEPNINNVHDIssssvsfldsssPRKPSFQAPIGYKSDDSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAGFSDTMASAASQVTITEPsasssssqsaaENKRGTSHLEATISPPFIDFLGVGA
Disordered region (IsUnstruct)
*************************************************************IVTSQNICYC*********************************************CSRGHWR****SKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRA*******RLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAA*****************************************************************************************************************************************FIDF*****
Disordered Region (DISOPRED)
**************************************************************************DHQKSDLAAGG***NN************************KVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIM*************************************************************************************************************************************************************************PFIDFLGVGA
Disordered Region (DISEMBL)
**************RKMNSMTNHYKNTINANAPTIDSSMDMFAAVAHMGSLSASPRKNSGHIVTSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAANDLEPNINNVHDIS****************FQAPIGYKSDDSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAGFSDTMA*****************************HLEATISPPFIDFLGVGA
Disordered Region (DISPRO)
********************************************************************CYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR*********************************************************************************************************************************************************************SPPFI**LGVG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLQQFHNSTSCHKRKMNSMTNHYKNTINANAPTIDSSMDMFAAVAHMGSLSASPRKNSGHIVTSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAANDLEPNINNVHDISSSSVSFLDSSSPRKPSFQAPIGYKSDDSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAGFSDTMASAASQVTITEPSASSSSSQSAAENKRGTSHLEATISPPFIDFLGVGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	395	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	no	no	0.255	0.331	0.574	1e-31
P52551	743	Myb-related protein B OS=	N/A	no	0.258	0.137	0.519	2e-28
Q03237	686	Myb-related protein B OS=	yes	no	0.321	0.185	0.444	4e-28
Q08759	624	Transcriptional activator	N/A	no	0.293	0.185	0.466	5e-28
P10242	640	Transcriptional activator	no	no	0.265	0.164	0.485	6e-28
P46200	640	Transcriptional activator	yes	no	0.265	0.164	0.485	7e-28
P06876	636	Transcriptional activator	no	no	0.265	0.165	0.485	8e-28
P10243	752	Myb-related protein A OS=	no	no	0.265	0.139	0.485	1e-27
P51960	751	Myb-related protein A OS=	no	no	0.265	0.139	0.485	1e-27
P01103	641	Transcriptional activator	no	no	0.265	0.163	0.485	1e-27

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 74/101 (73%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W P ED +L+ LV  YGP+NW +I++ + GRSGKSCRLRW NQL P++  R FS +E
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           +E +  AH  +GNKWA IARL  GRTDNAVKNHW+  + RK
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|P52551|MYBB_XENLA Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 53/102 (51%), Positives = 72/102 (70%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED K+ ELV  YG ++W LIA++L GR GK CR RW N L+P + K +++E+E
Sbjct: 83  KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY 220
           +  +  AH+V GN+WA IA+L PGRTDNAVKNHW+  + RK 
Sbjct: 143 DRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 184

Xenopus laevis (taxid: 8355)

>sp|Q03237|MYBB_CHICK Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1

 Score =  126 bits (316), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/135 (44%), Positives = 82/135 (60%), Gaps = 8/135 (5%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED K+ ELV  YG + W LIA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 83  KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVV 238
           +  +  AH+V GN+WA IA+L PGRTDNAVKNHW+  + RK             FLN+  
Sbjct: 143 DRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKVDTGG--------FLNETK 194

Query: 239 DDKKLEAAVAANDLE 253
           + + L   V  +D E
Sbjct: 195 ESQPLYLLVEVDDNE 209

Represses v-myb- and c-myb-mediated activation of the mim-1 gene, probably by competing with other myb proteins for binding sites. It is an inhibitory member of the myb family.

Gallus gallus (taxid: 9031)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  125 bits (314), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 78/118 (66%), Gaps = 2/118 (1%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 89  KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 148

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQ 236
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK  E+   Y +     NQ
Sbjct: 149 DRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK--EEQEGYLQNSSKTNQ 204

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 74/105 (70%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK  ++
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  125 bits (313), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 74/105 (70%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK  ++
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  125 bits (313), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 74/105 (70%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK  ++
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 74/105 (70%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ ELV  YGP+ W+LIA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 87  KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 146

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
           +  +  AH+  GN+WA IA+L PGRTDN++KNHW+  M RK  ++
Sbjct: 147 DRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQE 191

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 74/105 (70%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ ELV  YGP+ W+LIA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 87  KGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 146

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
           +  +  AH+  GN+WA IA+L PGRTDN++KNHW+  M RK  ++
Sbjct: 147 DRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQE 191

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  124 bits (310), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 74/105 (70%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK  ++
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQE 196

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
224141411	436	predicted protein [Populus trichocarpa]	0.926	0.839	0.457	4e-79
357474921	420	Myb-like protein A [Medicago truncatula]	0.703	0.661	0.486	2e-73
255582107	388	r2r3-myb transcription factor, putative	0.820	0.835	0.456	5e-73
359473355	432	PREDICTED: uncharacterized protein LOC10	0.853	0.780	0.460	2e-72
225452855	476	PREDICTED: uncharacterized protein LOC10	0.668	0.554	0.553	3e-72
296082936	437	unnamed protein product [Vitis vinifera]	0.668	0.604	0.553	3e-72
224101373	448	predicted protein [Populus trichocarpa]	0.724	0.638	0.495	4e-72
356497906	478	PREDICTED: uncharacterized protein LOC10	0.787	0.650	0.446	1e-71
302398937	360	MYB domain class transcription factor [M	0.756	0.830	0.465	2e-71
296086356	336	unnamed protein product [Vitis vinifera]	0.693	0.815	0.504	2e-70

>gi|224141411|ref|XP_002324066.1| predicted protein [Populus trichocarpa] gi|222867068|gb|EEF04199.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 197/431 (45%), Positives = 243/431 (56%), Gaps = 65/431 (15%)

Query: 1   MTLQQFHNSTSCHKRKMNSMTNHYKNTINANAPTIDSSMDMFAAVAHMGSLSASPRKNSG 60
           MTLQ  HN T CH    + + +HY  T +   P   S+M+    +  MGSLS  P     
Sbjct: 3   MTLQHSHNITCCHLEN-DGIPSHY--TTSTATPCNSSAME---TLNDMGSLSVDPSHR-- 54

Query: 61  HIVTSQNICYCDSSDHQKSDLAAGGDS-----DNNNKVDESVDGYED-------MEDVKK 108
                 NIC     D  +   A  G S     +NN   +E  DG ++       +E++++
Sbjct: 55  ---MPLNICSSVCFDMGQRGFALEGKSCSNRLENNQCSEEVGDGGKEQKHKAARIENIEE 111

Query: 109 --------MDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLR 160
                   M+G   K+C+RGHWRPAEDSKLKELVALYGPQNWNLIAEKL GRSGKSCRLR
Sbjct: 112 SLVNGKDIMEGREPKICNRGHWRPAEDSKLKELVALYGPQNWNLIAEKLRGRSGKSCRLR 171

Query: 161 WFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY 220
           WFNQLDP+IN+ AF+EDEEERLMAAHRVYGNKWA+IAR FPGRTDNAVKNHWH++MARKY
Sbjct: 172 WFNQLDPKINRTAFNEDEEERLMAAHRVYGNKWALIARFFPGRTDNAVKNHWHIVMARKY 231

Query: 221 REQSSAYYRRRKFLNQVVDDKKLEAA--VAANDL---EPN---INNVHDISSSSVSFLDS 272
           REQS  Y RR++   Q V  +   A   V+ N +   +PN   I N   I  S + F   
Sbjct: 232 REQSCIYRRRKR--TQAVQRRVDNAGDYVSRNTVKNTDPNSNIICNSRIIKPSCLPF--- 286

Query: 273 SSPRKPSFQAPIGYKSDDSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQF------- 325
            SP      +  G  + +    +S    G + ++ + F       H  H+          
Sbjct: 287 -SPLIGGCNSTYGKMTAELLFSRSHH--GSLAEETSRFLSG----HQMHYNMLRDSDTCT 339

Query: 326 -LMPMQHSSNYHLSAAAGFSDTMASAASQVTITEPSASSSSSQSAAENKRGTSHLEATIS 384
               MQ SSN H     GFSD MAS+A+Q T+   S  SSSS S AEN   +S    T S
Sbjct: 340 VFYAMQQSSNRHF---PGFSDAMASSATQATV---SEPSSSSLSVAENTEASSFEITTTS 393

Query: 385 PPFIDFLGVGA 395
           PPFIDFLGVGA
Sbjct: 394 PPFIDFLGVGA 404

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474921|ref|XP_003607746.1| Myb-like protein A [Medicago truncatula] gi|355508801|gb|AES89943.1| Myb-like protein A [Medicago truncatula]

 Score =  282 bits (721), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 168/345 (48%), Positives = 203/345 (58%), Gaps = 67/345 (19%)

Query: 107 KKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 166
           K++D G SK+C+RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD
Sbjct: 86  KEVDTGHSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 145

Query: 167 PRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA 226
           PRIN+RAFS++EEERLM AHR+YGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA
Sbjct: 146 PRINRRAFSDEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA 205

Query: 227 YYRRRKFLNQVVDDKKLEAA-------VAANDLEP--------NINN------------- 258
           Y RRR  LNQ V  +  E         V A  +EP        N+ N             
Sbjct: 206 YRRRR--LNQSVYRRMEENTSFVSRDIVTATGMEPVPPPPYYINLPNGTLGYNMASFPYS 263

Query: 259 -----------------VHDISSSSVSFLDSSSPRKPSF---QAPI----GYKSDDSFSQ 294
                             H  SS      D  +P        Q+P+    G + ++ +SQ
Sbjct: 264 TFHGVVDGGVECGLNGSTHLTSSKEAISSDKQAPTPIGLFAQQSPLDFFSGGRRNEYYSQ 323

Query: 295 KSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAGFSDTMASA-ASQ 353
             M+ W        +    +P   +H + Q++MPMQ  +N   S  +  S T A+   S+
Sbjct: 324 --MRSWDRPSDLHENQPTPTPSGFYHEYPQYMMPMQQQNNNFYSFTSNISTTAATTLGSE 381

Query: 354 VTITEPSASSSSSQSAAENKRG---TSHLEATISPPFIDFLGVGA 395
           V++       SS  +AAEN R     S+   + + PFIDFLGVGA
Sbjct: 382 VSL-------SSVAAAAENHRDQVLMSNPPPSDAIPFIDFLGVGA 419

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582107|ref|XP_002531848.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223528498|gb|EEF30526.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  281 bits (718), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 185/405 (45%), Positives = 226/405 (55%), Gaps = 81/405 (20%)

Query: 48  MGSLSASPRKNSGHIVTS--QNICYC----DSSDHQ-------KSDLAAGGDSDNNNKVD 94
           MGSLS  P  NS  +     +NICYC    +  DHQ       +   +    + N+  VD
Sbjct: 7   MGSLSLVPIINSVPVPVPPLKNICYCKVFDNKVDHQIEFSLMARCCTSCLDSNQNSEAVD 66

Query: 95  E---SVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEG 151
           +   +VD      +V KMD GLSKVC+RGHW+PAED+KLKELV+LYGPQNWNLIA KL+G
Sbjct: 67  DRECNVDKGSGGAEVVKMDYGLSKVCARGHWKPAEDAKLKELVSLYGPQNWNLIAAKLQG 126

Query: 152 RSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNH 211
           RSGKSCRLRWFNQLDPRIN+ AFSE+EEERL+AAHR++GNKWA+I++LFPGRTDNAVKNH
Sbjct: 127 RSGKSCRLRWFNQLDPRINRCAFSEEEEERLVAAHRIHGNKWALISKLFPGRTDNAVKNH 186

Query: 212 WHVIMARKYREQSSAYYRRRKFLNQVVDDK-------------KLEAAVAANDLEPNI-- 256
           WHVIMARKYR+QS AY  RRK L +    K              L+    +     N+  
Sbjct: 187 WHVIMARKYRQQSVAY--RRKILTRSTQTKVEHGNGSGSSRIGSLKLCSGSISRPSNLQF 244

Query: 257 -------------NNVHDI-----------SSSSVSFLDSSSPRKPSFQ-APIGYKSDDS 291
                        N   ++           SS+ +SF   S     SF   P G+   + 
Sbjct: 245 ATSNAGASNGSCDNTTSEVAAENGRVMFVRSSNLLSFPHGSCADHTSFDFFPGGHNGCEI 304

Query: 292 FSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAGFSDTMASAA 351
            S K       + KDG +FTV                MQ SSN+H SA     D MAS  
Sbjct: 305 LSHKEHCN---MPKDGTTFTV-------------FHTMQQSSNHHFSA-----DHMASPP 343

Query: 352 SQVTITEPSASSSSSQSAAENKRGTSHLEATI-SPPFIDFLGVGA 395
           +        +SSSS  S AENK   SH E T+ SPPFIDFLG+GA
Sbjct: 344 ASQVSISGPSSSSSLSSIAENK-AISHFETTVSSPPFIDFLGIGA 387

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473355|ref|XP_002269342.2| PREDICTED: uncharacterized protein LOC100253313 [Vitis vinifera]

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 190/413 (46%), Positives = 226/413 (54%), Gaps = 76/413 (18%)

Query: 41  MFAAVAHMGSLSASPRKNSGHI-VTSQNICY-------CDSS---DHQKSDLAAGGDSD- 88
           M    A MG+LS +P    G   V +   C+       C +    +H  SD+  G  SD 
Sbjct: 37  MGMVFADMGALSINPNYGVGPSEVENGRACWGFPFMGNCTAGSLEEHHNSDVGDGKGSDC 96

Query: 89  ------NNNKVDESVDGYEDMEDV-----KKMDGGLSKVCSRGHWRPAEDSKLKELVALY 137
                 NN  +D + +  E+  +      K+ D G SK+C+RGHWRPAED+KLKELVALY
Sbjct: 97  SDGFGENNETMDLNANINEENPNENIVSGKETDSGHSKLCARGHWRPAEDTKLKELVALY 156

Query: 138 GPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIA 197
           GPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN+RAFSE+EEERLM AHR+YGNKWAMIA
Sbjct: 157 GPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMDAHRLYGNKWAMIA 216

Query: 198 RLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAAND------ 251
           RLFPGRTDNAVKNHWHVIMARKYREQSSA YRRRK    V    + + +    D      
Sbjct: 217 RLFPGRTDNAVKNHWHVIMARKYREQSSA-YRRRKLSQSVYRRMEEDPSFVCRDTATRTE 275

Query: 252 -LEP--------NINN-------------VHDISSSSVSFLDSSSPRKPSF---QAPI-- 284
            + P         INN             V  ++S   +   S  P    F   Q P   
Sbjct: 276 TMPPYSINLSSGGINNNLSPFPFATFNGAVGGVNSGGEAISSSKLPPHTGFCAQQTPFEF 335

Query: 285 --GYKSDDSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAG 342
             G KS D  S  S  +     +D  +   S  Y     +   +M MQ  SNYH      
Sbjct: 336 FSGPKSHDMISMFSQHRSWDRPRDEPNNNTSGFYP---QYPPLMMAMQQ-SNYH--NTCN 389

Query: 343 FSDTMASAASQVTITEPSASSSSSQSAAENKRGTSHLEATISPPFIDFLGVGA 395
           F ++ AS   Q + TEPS+S +         R  SH E TI PPFIDFLGVGA
Sbjct: 390 FPNSTASTP-QASATEPSSSEN---------RVASHFE-TIPPPFIDFLGVGA 431

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452855|ref|XP_002278520.1| PREDICTED: uncharacterized protein LOC100245627 [Vitis vinifera]

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 165/298 (55%), Positives = 196/298 (65%), Gaps = 34/298 (11%)

Query: 109 MDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 168
           +DGG SK+C+RGHWRPAEDSKL+ELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR
Sbjct: 201 LDGGQSKLCARGHWRPAEDSKLRELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 260

Query: 169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYY 228
           IN+RAF+E+EEERLMAAHR YGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAY 
Sbjct: 261 INRRAFTEEEEERLMAAHRWYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYR 320

Query: 229 RRRKFLNQVVDDKKLEAAVAANDL-EPNINNVHDISSSSVSFLDSSSPRKPSFQAPIG-- 285
           RR+  +NQ    KKLE    +    + +I   H+    S++  + ++  K S   P    
Sbjct: 321 RRK--MNQAA-HKKLEVGGGSYVCRDTSIRTEHN----SLNVCNGNNFIKSSHHFPFAAH 373

Query: 286 --------YKSDDSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHL 337
                     S  + S++++   G     GAS + ++    HH       P    + +H 
Sbjct: 374 MGGGGSIINGSHMTSSEEAVSSGGGDWLVGASSSSNTMLPPHH-----TGPCPSQTPFHF 428

Query: 338 SAAAGFSDTMASAASQVTITEPSASSSSSQSAAENKRGTSHLEATISPPFIDFLGVGA 395
                 SD++AS     T     +  SSS SAAEN   T H EATISPPFIDFLGVGA
Sbjct: 429 -----LSDSVAS-----TSQVSVSEPSSSTSAAENMANT-HFEATISPPFIDFLGVGA 475

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082936|emb|CBI22237.3| unnamed protein product [Vitis vinifera]

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 165/298 (55%), Positives = 196/298 (65%), Gaps = 34/298 (11%)

Query: 109 MDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 168
           +DGG SK+C+RGHWRPAEDSKL+ELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR
Sbjct: 162 LDGGQSKLCARGHWRPAEDSKLRELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR 221

Query: 169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYY 228
           IN+RAF+E+EEERLMAAHR YGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAY 
Sbjct: 222 INRRAFTEEEEERLMAAHRWYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYR 281

Query: 229 RRRKFLNQVVDDKKLEAAVAANDL-EPNINNVHDISSSSVSFLDSSSPRKPSFQAPIG-- 285
           RR+  +NQ    KKLE    +    + +I   H+    S++  + ++  K S   P    
Sbjct: 282 RRK--MNQAA-HKKLEVGGGSYVCRDTSIRTEHN----SLNVCNGNNFIKSSHHFPFAAH 334

Query: 286 --------YKSDDSFSQKSMQQWGMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHL 337
                     S  + S++++   G     GAS + ++    HH       P    + +H 
Sbjct: 335 MGGGGSIINGSHMTSSEEAVSSGGGDWLVGASSSSNTMLPPHH-----TGPCPSQTPFHF 389

Query: 338 SAAAGFSDTMASAASQVTITEPSASSSSSQSAAENKRGTSHLEATISPPFIDFLGVGA 395
                 SD++AS     T     +  SSS SAAEN   T H EATISPPFIDFLGVGA
Sbjct: 390 -----LSDSVAS-----TSQVSVSEPSSSTSAAENMANT-HFEATISPPFIDFLGVGA 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101373|ref|XP_002312252.1| predicted protein [Populus trichocarpa] gi|222852072|gb|EEE89619.1| predicted protein [Populus trichocarpa]

 Score =  278 bits (710), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 167/337 (49%), Positives = 204/337 (60%), Gaps = 51/337 (15%)

Query: 101 EDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLR 160
           E+M   K+ + G SK+C+RGHWRPAED++LK+LVALYGPQNWNLIAEKLEGRSGKSCRLR
Sbjct: 120 ENMMSGKETESGQSKLCTRGHWRPAEDTQLKKLVALYGPQNWNLIAEKLEGRSGKSCRLR 179

Query: 161 WFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY 220
           WFNQLDPRIN++AF+E+EEERLM AHR+YGNKWAMIARLFPGRTDNAVKNHWHVIMARKY
Sbjct: 180 WFNQLDPRINRKAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY 239

Query: 221 REQSSAYYRRRKFLNQVVDDKKLE-----------------------AAVAANDLEP-NI 256
           REQSSAY RRR  L+Q V+ +  E                       +A   N L P  I
Sbjct: 240 REQSSAYRRRR--LSQSVNRRTEETPSFVGRDAGMKTVQPPYCPSISSAGGLNKLSPCQI 297

Query: 257 NNVHDISSSSVSFLDSSSPRKPSFQAPI--------GYKSD----DSFS-QKSMQQWGM- 302
            N +      V +  + SP   S    +        G+ +     D FS  KS    GM 
Sbjct: 298 GNFNGAGRGGVDYGLNGSPHMTSGGEAVSSIKVPQSGFCAQQTPFDFFSGPKSNDMMGMF 357

Query: 303 ---IMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYHLSAAAGFSDTMASAASQ-VTITE 358
              I  D  +        +   H  +++ MQ S++ +      FSD+ AS   Q V+ +E
Sbjct: 358 SQTISWDRPNNEPRISGFYPQQHPSYILTMQQSNHQYPYC---FSDSTASTLPQAVSASE 414

Query: 359 PSASSSSSQSAAENKRGTSHLEATISPPFIDFLGVGA 395
           PS SS    S A+  R + H E T+ PPFIDFLGVGA
Sbjct: 415 PSCSSP---SVADQSRVSGHSE-TVPPPFIDFLGVGA 447

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356497906|ref|XP_003517797.1| PREDICTED: uncharacterized protein LOC100776292 [Glycine max]

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 171/383 (44%), Positives = 218/383 (56%), Gaps = 72/383 (18%)

Query: 79  SDLAAGGDSDNNNK---------VDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSK 129
           SDL   G+S+N+N+          +E  +  E+  + K++D G SK+C+RGHWRPAEDSK
Sbjct: 101 SDLVGAGESNNSNEKTNHNNGKFSEEESNPNENHANGKEVDSGHSKLCARGHWRPAEDSK 160

Query: 130 LKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVY 189
           LKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN+RAFSE+EEERLM AHR+Y
Sbjct: 161 LKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIY 220

Query: 190 GNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRR------KFLNQ----VVD 239
           GNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAY RRR      + + Q    V  
Sbjct: 221 GNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRMSQSVHRRVEQNPTFVCS 280

Query: 240 DKKLEAAVAANDLEPN--------------INNV------HDISSSS---VSFLDSSSPR 276
             +  A+    + EP+               NN+      H +++ +   V F  + SP+
Sbjct: 281 SSRDNASTTEQEPEPSPSYYPNLIHHGVALTNNMASFPPFHGVAACNGVVVEFGSNGSPQ 340

Query: 277 K-PSFQAPIGYKSDDSFSQKSMQQ--WGMIMKDGASFTVSSPYTH----------HHHH- 322
              S +  +   +    S ++ QQ  +      G++  V    +H          H+HH 
Sbjct: 341 NMTSGREAMPNTTHVGLSAQAQQQAPFDFFSGGGSNDIVLESISHMRSRERTNGSHNHHC 400

Query: 323 ----------QQFLMPMQHSSNYHLSAAAGFSDTMASAASQVTITEPSASSSSSQSAAEN 372
                     QQ+LM MQ      L     F   + S+ +  T  EPS+S   ++    +
Sbjct: 401 QLSGCYPHYPQQYLMAMQQ----QLDNNNNFYSFLNSSPAASTAREPSSSPCVAE--IRD 454

Query: 373 KRGTSHLEATISPPFIDFLGVGA 395
           K   S     + PPF DFLGVGA
Sbjct: 455 KVENSDPPDGVPPPFFDFLGVGA 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398937|gb|ADL36763.1| MYB domain class transcription factor [Malus x domestica]

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 175/376 (46%), Positives = 212/376 (56%), Gaps = 77/376 (20%)

Query: 73  SSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKE 132
           SSDH K+   +GG      KV E           K+ + G SK+C+RGHWRPAEDSKLKE
Sbjct: 8   SSDHDKNPNESGG------KVSE-----------KETESGQSKLCARGHWRPAEDSKLKE 50

Query: 133 LVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK 192
           LVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN+RAF+E+EEERLM AHR+YGNK
Sbjct: 51  LVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRIYGNK 110

Query: 193 WAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVV-----DDKKLEAAV 247
           WAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAY RR+  LNQ V     ++    AA 
Sbjct: 111 WAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRK--LNQTVYRSMEENPSFNAAS 168

Query: 248 AANDLEPNINNVH-DISSSSVSFLDSSSPRKPSFQAPIGYKSDDSFS------------- 293
            + +  P  N +         S   SS     S+   +GY +D   S             
Sbjct: 169 RSTEPPPPYNGLSLPNGGLGGSGSISSFSYGTSYDGVVGYGADYYGSNGSQNLISVEEEA 228

Query: 294 -------------------------QKSMQQWGMIMK----DGASFTVSSPY----THHH 320
                                    +KS +  GM+ +    DG+       Y    THH 
Sbjct: 229 IARKKLLSYNNSGFCSQQTPEFFRGRKSNEVMGMMSQNQCWDGSGEMEGHSYGGMYTHHP 288

Query: 321 HHQQFLMPMQHSSNYHLSAAAGFSDTMASAASQVTITEPSASSSSSQSAAENKRGTSHLE 380
                +M MQ  SN+H      +SD+    + Q +  +PS S+S++     +  G+S  E
Sbjct: 289 PPNMNVMTMQQ-SNFHSLVHQKYSDS----SCQFSGGKPSPSASAADRVVGSGGGSSRRE 343

Query: 381 ATIS-PPFIDFLGVGA 395
            +I  PPFIDFLGVGA
Sbjct: 344 TSIQPPPFIDFLGVGA 359

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086356|emb|CBI31945.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/331 (50%), Positives = 194/331 (58%), Gaps = 57/331 (17%)

Query: 107 KKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 166
           K+ D G SK+C+RGHWRPAED+KLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD
Sbjct: 20  KETDSGHSKLCARGHWRPAEDTKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 79

Query: 167 PRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA 226
           PRIN+RAFSE+EEERLM AHR+YGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA
Sbjct: 80  PRINRRAFSEEEEERLMDAHRLYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA 139

Query: 227 YYRRRKFLNQVVDDKKLEAAVAANDLEPNINNV--HDISSSSVSFLDSSSPRK-PSFQAP 283
            YRRRK    V    + + +    D       +  + I+ SS    ++ SP    +F   
Sbjct: 140 -YRRRKLSQSVYRRMEEDPSFVCRDTATRTETMPPYSINLSSGGINNNLSPFPFATFNGA 198

Query: 284 IG---YKSDDS----------FSQKSMQQWGMIMKDGASFTVSSPYTH------------ 318
           +G   Y S+ S           S K     G   +       S P +H            
Sbjct: 199 VGGVVYGSNGSPQVNSGGEAISSSKLPPHTGFCAQQTPFEFFSGPKSHDMISMFSQHRSW 258

Query: 319 --------------HHHHQQFLMPMQHSSNYHLSAAAGFSDTMASAASQVTITEPSASSS 364
                         +  +   +M MQ  SNYH      F ++ AS   Q + TEPS+S  
Sbjct: 259 DRPRDEPNNNTSGFYPQYPPLMMAMQQ-SNYH--NTCNFPNSTASTP-QASATEPSSS-- 312

Query: 365 SSQSAAENKRGTSHLEATISPPFIDFLGVGA 395
                 EN R  SH E TI PPFIDFLGVGA
Sbjct: 313 ------EN-RVASHFE-TIPPPFIDFLGVGA 335

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	395
TAIR|locus:2007136	330	MYB105 "myb domain protein 105	0.402	0.481	0.711	1.8e-60
TAIR|locus:2200635	359	MYB117 "myb domain protein 117	0.427	0.470	0.655	2.6e-59
TAIR|locus:2175931	323	MYB56 "myb domain protein 56"	0.415	0.507	0.603	1.5e-55
TAIR|locus:2087017	305	MYB110 "myb domain protein 110	0.356	0.462	0.649	1.2e-51
TAIR|locus:2206910	243	MYB54 "myb domain protein 54"	0.275	0.448	0.779	3.7e-50
TAIR|locus:2030903	249	MYB52 "myb domain protein 52"	0.275	0.437	0.761	5.3e-49
TAIR|locus:2119171	250	MYB69 "myb domain protein 69"	0.278	0.44	0.709	3.3e-45
TAIR|locus:2164900	190	MYB89 "myb domain protein 89"	0.278	0.578	0.627	4.4e-36
TAIR|locus:2061242	367	MYB25 "myb domain protein 25"	0.326	0.351	0.5	6.7e-33
TAIR|locus:2083489	393	MYB1 "myb domain protein 1" [A	0.440	0.442	0.373	3.4e-32

TAIR|locus:2007136 MYB105 "myb domain protein 105" [Arabidopsis thaliana (taxid:3702)]

 Score = 586 (211.3 bits), Expect = 1.8e-60, Sum P(2) = 1.8e-60
 Identities = 116/163 (71%), Positives = 133/163 (81%)

Query:    72 DSSDHQKSDLAAGGDSDNN-NKVDESVDGYEDMEDVKKMDGGLSKVC-SRGHWRPAEDSK 129
             D++ H +S   +  + D N N  D S    +D   V +  G  SK   SRGHWRPAED+K
Sbjct:    59 DNAQHLRSYYTSHREEDMNPNLSDYSNCNKKDTT-VYRSCGHSSKASVSRGHWRPAEDTK 117

Query:   130 LKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVY 189
             LKELVA+YGPQNWNLIAEKL+GRSGKSCRLRWFNQLDPRIN+RAF+E+EEERLM AHR+Y
Sbjct:   118 LKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLY 177

Query:   190 GNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRK 232
             GNKWAMIARLFPGRTDN+VKNHWHVIMARK+REQSS+Y RRRK
Sbjct:   178 GNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSY-RRRK 219

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IGI

TAIR|locus:2200635 MYB117 "myb domain protein 117" [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
 Identities = 118/180 (65%), Positives = 138/180 (76%)

Query:    86 DSDNNN-KVDESVDGYEDMEDV-KKMDGGLSK--VCSRGHWRPAEDSKLKELVALYGPQN 141
             +S+NNN     S  G ++  D  +      SK  V  RGHWRPAED KLKELV++YGPQN
Sbjct:    61 ESNNNNPNFSNSESGKKETTDSGQSWSSSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQN 120

Query:   142 WNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFP 201
             WNLIAEKL+GRSGKSCRLRWFNQLDPRIN+RAF+E+EEERLM AHR+YGNKWAMIARLFP
Sbjct:   121 WNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFP 180

Query:   202 GRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAANDLEPNIN-NVH 260
             GRTDN+VKNHWHV+MARKYRE SSAY RRRK ++    +  L+  +  N+  PN N N H
Sbjct:   181 GRTDNSVKNHWHVVMARKYREHSSAY-RRRKLMS----NNPLKPHLT-NNHHPNPNPNYH 234

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2175931 MYB56 "myb domain protein 56" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 1.5e-55, Sum P(3) = 1.5e-55
 Identities = 102/169 (60%), Positives = 122/169 (72%)

Query:    55 PRKNSGHIVTS-QNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGL 113
             P  ++    TS  N     +  H KS      + ++ N+  E+    E    ++   G  
Sbjct:    32 PNSHTAACKTSLNNPSISRNHPHNKSASVLESEDEHGNERGEN----EKSLRMRGKSGIN 87

Query:   114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRA 173
             +KVCSRGHWRP ED+KLKELVA +GPQNWNLI+  L GRSGKSCRLRWFNQLDPRINKRA
Sbjct:    88 TKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRA 147

Query:   174 FSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYRE 222
             F+E+EE RL+AAHR YGNKWA+I+RLFPGRTDNAVKNHWHVIMAR+ RE
Sbjct:   148 FTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2087017 MYB110 "myb domain protein 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 98/151 (64%), Positives = 124/151 (82%)

Query:    90 NNKVDESVDGY----------EDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGP 139
             NN V E+V+ +          +D++  KK    +S+VCSRGHWR +ED++L ELV++YGP
Sbjct:    28 NNAVSETVEEFCNKRRMQKKSDDLKTKKKKKQSVSRVCSRGHWRISEDTQLMELVSVYGP 87

Query:   140 QNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARL 199
             QNWN IAE ++GR+GKSCRLRWFNQLDPRINKRAFS++EEERL+AAHR +GNKWAMIA+L
Sbjct:    88 QNWNHIAESMQGRTGKSCRLRWFNQLDPRINKRAFSDEEEERLLAAHRAFGNKWAMIAKL 147

Query:   200 FPGRTDNAVKNHWHVIMARKYREQSSAYYRR 230
             F GRTDNA+KNHWHV+MARK R+QSS+Y +R
Sbjct:   148 FNGRTDNALKNHWHVLMARKMRQQSSSYVQR 178

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2206910 MYB54 "myb domain protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 3.7e-50, Sum P(2) = 3.7e-50
 Identities = 85/109 (77%), Positives = 98/109 (89%)

Query:   116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFS 175
             +CSRGHWRPAED KLK+LV  YGP NWN IA KL GRSGKSCRLRWFNQLDPRIN+  F+
Sbjct:     3 MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query:   176 EDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQS 224
             E+EEERL+AAHR++GN+W++IARLFPGRTDNAVKNHWHVIMAR+ R+ S
Sbjct:    63 EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTS 111

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2030903 MYB52 "myb domain protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
 Identities = 83/109 (76%), Positives = 99/109 (90%)

Query:   116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFS 175
             +CSRGHWRPAED KL+ELV  +GP NWN IA+KL GRSGKSCRLRWFNQLDPRIN+  F+
Sbjct:     2 MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query:   176 EDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQS 224
             E+EEERL+A+HR++GN+W++IAR FPGRTDNAVKNHWHVIMAR+ RE+S
Sbjct:    62 EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERS 110

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2119171 MYB69 "myb domain protein 69" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 3.3e-45, Sum P(2) = 3.3e-45
 Identities = 78/110 (70%), Positives = 92/110 (83%)

Query:   117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSE 176
             C RGHWRP ED  L++LV  YGP+NWN IA+ L GRSGKSCRLRW+NQLDP I K+ F+E
Sbjct:    17 CQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFTE 76

Query:   177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA 226
             +EEERL+ AHR+ GN+WA IARLFPGRTDNAVKNH+HVIMAR+ RE  S+
Sbjct:    77 EEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKRENFSS 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2164900 MYB89 "myb domain protein 89" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 69/110 (62%), Positives = 88/110 (80%)

Query:   120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEE 179
             GHW  +ED KLKELVA++GPQNW  I EK+E R+  SCR RWFNQLDP+INKR F+++EE
Sbjct:    57 GHWTLSEDLKLKELVAVFGPQNWKFIGEKMEPRTSLSCRQRWFNQLDPKINKRNFTDEEE 116

Query:   180 ERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYR 229
             E+L+ AH +YGNKW+ IA+LF  RTD+AVKNHWH +M R  R+QS++  R
Sbjct:   117 EKLLRAHILYGNKWSKIAKLFNRRTDHAVKNHWHSLMNRIIRKQSASDIR 166

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 68/136 (50%), Positives = 95/136 (69%)

Query:    91 NKVDESVDGYEDMEDVKKMD---GGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAE 147
             N + ++V+   ++ ++ K D   GG SKV  +G W P +D  L  LV + GP+NWNLI+ 
Sbjct:    23 NAIHKAVEA--ELAELAKSDANGGGKSKV--KGPWLPEQDEALTRLVKMCGPRNWNLISR 78

Query:   148 KLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNA 207
              + GRSGKSCRLRW NQLDP + ++ FS++EE  +M+A  V GNKW++IA+L PGRTDNA
Sbjct:    79 GIPGRSGKSCRLRWCNQLDPILKRKPFSDEEEHMIMSAQAVLGNKWSVIAKLLPGRTDNA 138

Query:   208 VKNHWHVIMARKYREQ 223
             +KNHW+  + RK  EQ
Sbjct:   139 IKNHWNSNLRRKPAEQ 154

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 3.4e-32, Sum P(2) = 3.4e-32
 Identities = 68/182 (37%), Positives = 102/182 (56%)

Query:    77 QKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVAL 136
             ++S +  G    +   V E   G+       + D    +V  +G W   ED  L ELV  
Sbjct:    19 EESSIGRGDCDGDGGDVGEDAAGFVGTSGRGRRD----RV--KGPWSKEEDDVLSELVKR 72

Query:   137 YGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMI 196
              G +NW+ IA  + GRSGKSCRLRW NQL+P + + +F+E E++ ++AAH ++GNKWA+I
Sbjct:    73 LGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFTEVEDQAIIAAHAIHGNKWAVI 132

Query:   197 ARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLNQVVDDKKLEAAVAANDLEPNI 256
             A+L PGRTDNA+KNHW+  + R++ +   A       L  VVDD   +        E  +
Sbjct:   133 AKLLPGRTDNAIKNHWNSALRRRFIDFEKAKNIGTGSL--VVDDSGFDRTTTVASSEETL 190

Query:   257 NN 258
             ++
Sbjct:   191 SS 192

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00036944001 SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (457 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	395
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-20
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	4e-20
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-15
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	4e-15
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-14
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	2e-13
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	6e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	4e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	6e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	3e-05
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	0.001

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score = 92.3 bits (229), Expect = 2e-20
 Identities = 62/191 (32%), Positives = 88/191 (46%), Gaps = 19/191 (9%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEG--RSGKSCRLRWFNQLDPRINKRAFSE 176
           +G W P ED KL   +  YG   W+ +  K  G  R GKSCRLRW N L P + +  FS+
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVP-KQAGLQRCGKSCRLRWINYLRPDLKRGTFSQ 72

Query: 177 DEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ----------SSA 226
            EE  ++  H V GN+W+ IA   PGRTDN +KN W+  + +K R++          S  
Sbjct: 73  QEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEV 132

Query: 227 YYRRRKFLNQVVDDKKLEAAVAANDLEPNINNVHDISSSSVSFLDSSSPRKPSFQAPIGY 286
                K  N   DDK  +A+   ++ E N+    +    +      SS   P   A    
Sbjct: 133 ENGEDK--NPPTDDKSDKASSVVSN-ELNLLKADNSKPLAALQEKRSSSISP---AGYQL 186

Query: 287 KSDDSFSQKSM 297
           + + S S K  
Sbjct: 187 EVESSSSSKIN 197

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score = 88.6 bits (219), Expect = 4e-20
 Identities = 41/106 (38%), Positives = 60/106 (56%), Gaps = 1/106 (0%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEG-RSGKSCRLRWFNQLDPRINKRAFSED 177
           RG W   ED  L   +   G   W  + ++    R GKSCRLRW N L P + +   + D
Sbjct: 25  RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD 84

Query: 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
           EE+ ++  HR+ GN+W++IA   PGRTDN +KN+W+  + +K   Q
Sbjct: 85  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQ 130

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 22/47 (46%), Positives = 27/47 (57%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL 165
           RG W P ED  L E V  +G  NW+ IA+ L GR+   C+ RW N L
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 37/116 (31%), Positives = 56/116 (48%)

Query: 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEE 179
           G W+  ED  LK LV   GP NW+ +A  L   +GK    RW N L+P++ K+ +SE+E+
Sbjct: 21  GSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEED 80

Query: 180 ERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRRRKFLN 235
           E+L+   +  G +W+ IA     RT       +   +        S   RR +F  
Sbjct: 81  EQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDK 136

Length = 512

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 2/61 (3%)

Query: 122 WRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEER 181
           W   ED KL +LV  YG  +W  IAE+L GR+  +CR RW  +L P+ ++  ++++E++R
Sbjct: 1   WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQR 58

Query: 182 L 182
           L
Sbjct: 59  L 59

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 24/49 (48%), Positives = 29/49 (59%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           +G W   ED  L ELV  YG  NW  IA++L GR+ + CR RW N L P
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 62.5 bits (153), Expect = 6e-13
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 171 KRAFSEDEEERLMAAHRVYGNK-WAMIARLFPGRTDNAVKNHWHVIM 216
           +  ++ +E+E L+ A + +GN  W+ IA+  PGRTDN  KN W+  +
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 21/42 (50%), Positives = 24/42 (57%)

Query: 122 WRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163
           W   ED  L E V  YG  NW  IA++L GR+ K CR RW N
Sbjct: 2   WTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 171 KRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMAR 218
           K  ++E+E+E L+   + YG N W  IA+  PGRT    +  W  ++  
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 53.7 bits (130), Expect = 6e-10
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 173 AFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWH 213
            ++E+E+E L+ A + YG N W  IA+  PGRT    +  W 
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 174 FSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYR 221
           ++E+E+E+L+     YGN W  IA    GRT +A ++ W   +  K  
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRS 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 167 PRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDN 206
           P I K  ++ +E+E+L+   ++   +W  IA +  GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTIAPIV-GRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	395
PLN03212	249	Transcription repressor MYB5; Provisional	99.97
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.97
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.9
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.89
PLN03091	459	hypothetical protein; Provisional	99.88
PLN03212	249	Transcription repressor MYB5; Provisional	99.87
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.84
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.64
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.59
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.5
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.49
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.42
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.4
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.38
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.35
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.29
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.14
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.14
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.09
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.02
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.96
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.59
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.56
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.55
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.54
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.34
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.17
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.8
PRK13923	170	putative spore coat protein regulator protein YlbO	96.79
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.78
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.78
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.63
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.58
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.52
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.46
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.37
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.04
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.92
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.73
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.51
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.34
PRK13923	170	putative spore coat protein regulator protein YlbO	94.87
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	94.69
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.91
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.65
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.49
KOG4282	345	consensus Transcription factor GT-2 and related pr	90.48
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	87.96
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	86.71
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	85.42
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	83.95
KOG1194	534	consensus Predicted DNA-binding protein, contains	83.77
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	83.56
KOG1194	534	consensus Predicted DNA-binding protein, contains	82.47
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	81.99
KOG4282	345	consensus Transcription factor GT-2 and related pr	81.62
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	80.1

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.97  E-value=2.5e-31  Score=252.25  Aligned_cols=127  Identities=33%  Similarity=0.609  Sum_probs=113.4

Q ss_pred             cCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc-cCCChhhhhhhhhhccccccccCCCC
Q 047550           97 VDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL-EGRSGKSCRLRWFNQLDPRINKRAFS  175 (395)
Q Consensus        97 lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l-pgRt~~QCr~RW~~~L~p~l~kg~WT  175 (395)
                      |+.|+...|.       ++.+++++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||
T Consensus        10 ~~~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT   82 (249)
T PLN03212         10 VSKKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT   82 (249)
T ss_pred             CCCCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCC
Confidence            4455554443       456789999999999999999999988999999999 69999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhhhhHHhh
Q 047550          176 EDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYYRR  230 (395)
Q Consensus       176 ~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~~~~~~~~~  230 (395)
                      +|||++|++++.+||++|+.||+.|+|||+++|||||+.++++++.+........
T Consensus        83 ~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~  137 (249)
T PLN03212         83 SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTH  137 (249)
T ss_pred             hHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCC
Confidence            9999999999999999999999999999999999999999999887765444333

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.97  E-value=5.8e-31  Score=251.57  Aligned_cols=109  Identities=37%  Similarity=0.726  Sum_probs=105.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-CCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchh
Q 047550          116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWA  194 (395)
Q Consensus       116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-gRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs  194 (395)
                      .+.||+||+|||++|+++|++||.++|..|++.++ +|++++||.||.|||+|++++|.||+|||++|++++..+|++|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            35579999999999999999999999999999998 99999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 047550          195 MIARLFPGRTDNAVKNHWHVIMARKYREQS  224 (395)
Q Consensus       195 ~IA~~l~gRT~~qcknRw~~ilkkk~~~~~  224 (395)
                      .||++|||||++.|||+|+..+|||+....
T Consensus        86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999887665

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=262.09  Aligned_cols=112  Identities=39%  Similarity=0.809  Sum_probs=106.3

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc-cCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCc
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL-EGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK  192 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l-pgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~k  192 (395)
                      +..++||+||+|||++|+++|.+||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++++||++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            367889999999999999999999999999999998 5999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhhh
Q 047550          193 WAMIARLFPGRTDNAVKNHWHVIMARKYREQSS  225 (395)
Q Consensus       193 Ws~IA~~l~gRT~~qcknRw~~ilkkk~~~~~~  225 (395)
                      |++||+.|+|||+++|||||+.+++++++....
T Consensus        89 WskIAk~LPGRTDnqIKNRWnslLKKklr~~~I  121 (459)
T PLN03091         89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGI  121 (459)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999998876543

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.90  E-value=4.2e-24  Score=222.15  Aligned_cols=149  Identities=25%  Similarity=0.423  Sum_probs=136.0

Q ss_pred             CCCcchhHHHHHhcC---CCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHH
Q 047550           71 CDSSDHQKSDLAAGG---DSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAE  147 (395)
Q Consensus        71 ~~~eD~~L~~lv~~~---~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk  147 (395)
                      ++++|-+|+.+|...   .+.+|.+|-..||||+..|...||.+.|+|.+++|+||++||.+|+.+|.+||.+.|.+|-.
T Consensus       309 sEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~  388 (939)
T KOG0049|consen  309 SEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQ  388 (939)
T ss_pred             chhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHH
Confidence            488899999888754   55699999999999999999999999999999999999999999999999999999999999


Q ss_pred             HccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550          148 KLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       148 ~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk  219 (395)
                      .+|||++.|||+||.+.|....+++.||-.||+.|+.+|++|| +.|.+||..||+||..|.+.|=..++.-+
T Consensus       389 ~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k  461 (939)
T KOG0049|consen  389 AVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAK  461 (939)
T ss_pred             hcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 78999999999999966544433333333

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.89  E-value=2.6e-23  Score=216.30  Aligned_cols=160  Identities=19%  Similarity=0.363  Sum_probs=144.5

Q ss_pred             ccCCcccCCCcchhHHHHHhcCCCCChHHHHhhcC-CCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCC--
Q 047550           64 TSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVD-GYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQ--  140 (395)
Q Consensus        64 ~~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lp-gRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~--  140 (395)
                      +-+.-|. .+||++|..+...++..+|..||..++ +|+..||..++...++. +....||+|||.+|+.+|++...+  
T Consensus       251 ~nk~~WS-~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~-L~ekeWsEEed~kL~alV~~~~~nSh  328 (939)
T KOG0049|consen  251 WNKEHWS-NEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQ-LSEKEWSEEEDTKLIALVKITSINSH  328 (939)
T ss_pred             cchhccC-hHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHH-HHhhhcchhhhHHHHHHHHHhhccCc
Confidence            3345554 899999999999999999999999998 69999999998876554 455799999999999999998644  


Q ss_pred             -hHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCc-hhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          141 -NWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK-WAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       141 -nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~k-Ws~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                       +|.+|-.+||||+..|...||...|+|.+++|.||.+||.+|+.+|.+||++ |.+|-..+|||++.|||.||.+.|.+
T Consensus       329 I~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~  408 (939)
T KOG0049|consen  329 IQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNR  408 (939)
T ss_pred             cchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHH
Confidence             6999999999999999999999999999999999999999999999999976 99999999999999999999999988


Q ss_pred             HHHhhhh
Q 047550          219 KYREQSS  225 (395)
Q Consensus       219 k~~~~~~  225 (395)
                      ..+...+
T Consensus       409 s~K~~rW  415 (939)
T KOG0049|consen  409 SAKVERW  415 (939)
T ss_pred             hhccCce
Confidence            7766544

>PLN03091 hypothetical protein; Provisional

Probab=99.88  E-value=4.3e-23  Score=209.01  Aligned_cols=116  Identities=18%  Similarity=0.229  Sum_probs=103.6

Q ss_pred             ccccccCCCCCCCCccccCCcccCCCcchhHHHHHhcCCCCChHHHHhhcC-CCCchhHHHHhhcCCCCCCCCCCCCHHH
Q 047550           48 MGSLSASPRKNSGHIVTSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVD-GYEDMEDVKKMDGGLSKVCSRGHWRPAE  126 (395)
Q Consensus        48 ~~s~~~~~~~~~~h~~~~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lp-gRt~~qcr~Rw~~~l~p~~~kg~WT~EE  126 (395)
                      ||+..+.....     +.++.|+ ++||++|+.+|.++|..+|..||+.++ +|+++||+.||.++|+|.+++|+||+||
T Consensus         1 mgr~~Cc~Kqk-----lrKg~WT-pEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EE   74 (459)
T PLN03091          1 MGRHSCCYKQK-----LRKGLWS-PEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQE   74 (459)
T ss_pred             CCCCccCcCCC-----CcCCCCC-HHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHH
Confidence            56666655544     5666665 999999999999999999999999985 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccc
Q 047550          127 DSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN  170 (395)
Q Consensus       127 D~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~  170 (395)
                      |++|++++.+|| .+|.+||+.|+||++.+|++||+.+|++.++
T Consensus        75 D~lLLeL~k~~G-nKWskIAk~LPGRTDnqIKNRWnslLKKklr  117 (459)
T PLN03091         75 ENLIIELHAVLG-NRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR  117 (459)
T ss_pred             HHHHHHHHHHhC-cchHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999 5699999999999999999999988765433

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.87  E-value=8.1e-23  Score=194.39  Aligned_cols=105  Identities=15%  Similarity=0.173  Sum_probs=96.1

Q ss_pred             ccCCcccCCCcchhHHHHHhcCCCCChHHHHhhc-CCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChH
Q 047550           64 TSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESV-DGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNW  142 (395)
Q Consensus        64 ~~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~l-pgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW  142 (395)
                      +++.-|+ ++||++|..+|.+++..+|.+||+.+ ++|+++||+.||.++|+|.+++++||+|||++|++++..|| .+|
T Consensus        23 lKRg~WT-~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~G-nKW  100 (249)
T PLN03212         23 MKRGPWT-VEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLG-NRW  100 (249)
T ss_pred             CcCCCCC-HHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcc-ccH
Confidence            4455554 89999999999999999999999998 49999999999999999999999999999999999999999 569


Q ss_pred             HHHHHHccCCChhhhhhhhhhccccccc
Q 047550          143 NLIAEKLEGRSGKSCRLRWFNQLDPRIN  170 (395)
Q Consensus       143 ~kIAk~lpgRt~~QCr~RW~~~L~p~l~  170 (395)
                      ..||+.|||||+.+|++||..+|++.+.
T Consensus       101 s~IAk~LpGRTDnqIKNRWns~LrK~l~  128 (249)
T PLN03212        101 SLIAGRIPGRTDNEIKNYWNTHLRKKLL  128 (249)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHhHHHH
Confidence            9999999999999999999988765433

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.84  E-value=2.2e-21  Score=185.62  Aligned_cols=99  Identities=19%  Similarity=0.271  Sum_probs=93.5

Q ss_pred             CCcccCCCcchhHHHHHhcCCCCChHHHHhhcC-CCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHH
Q 047550           66 QNICYCDSSDHQKSDLAAGGDSDNNNKVDESVD-GYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNL  144 (395)
Q Consensus        66 k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lp-gRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~k  144 (395)
                      ++-|+ ++||++|.++|.++|..+|..|++.++ +|++++||.||.++|+|.++||.||+|||++|++++.++| ..|..
T Consensus         9 kGpWt-~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~G-NrWs~   86 (238)
T KOG0048|consen    9 KGPWT-QEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLG-NRWSL   86 (238)
T ss_pred             CCCCC-hHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHC-cHHHH
Confidence            46565 999999999999999999999999999 9999999999999999999999999999999999999999 56999


Q ss_pred             HHHHccCCChhhhhhhhhhccc
Q 047550          145 IAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       145 IAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      ||++|||||++.++++|...|+
T Consensus        87 IA~~LPGRTDNeIKN~Wnt~lk  108 (238)
T KOG0048|consen   87 IAGRLPGRTDNEVKNHWNTHLK  108 (238)
T ss_pred             HHhhCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999976653

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.64  E-value=4.5e-16  Score=118.04  Aligned_cols=60  Identities=45%  Similarity=0.906  Sum_probs=54.9

Q ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHH
Q 047550          122 WRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERL  182 (395)
Q Consensus       122 WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~L  182 (395)
                      ||+|||++|+++|..|| .+|.+||+.|+.|++.+|+.||.+.|++.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 6899999999669999999999999999999999999999987

...

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.59  E-value=4.1e-15  Score=156.59  Aligned_cols=151  Identities=21%  Similarity=0.380  Sum_probs=124.3

Q ss_pred             cccCCCcchhHHHHHhcCC---------------CC--------ChHHHHhhcCCCCchhHHHHhhcCCCCCC-CCCCCC
Q 047550           68 ICYCDSSDHQKSDLAAGGD---------------SD--------NNNKVDESVDGYEDMEDVKKMDGGLSKVC-SRGHWR  123 (395)
Q Consensus        68 i~~~~~eD~~L~~lv~~~~---------------~~--------dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~-~kg~WT  123 (395)
                      ..|..++|..+...|..+-               +.        .|+.|...||-|+....+..-++...+-- .+|.||
T Consensus       309 ~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~wt  388 (607)
T KOG0051|consen  309 KKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKWT  388 (607)
T ss_pred             hhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCCC
Confidence            4455677777776555441               11        47889999999999888875444434433 999999


Q ss_pred             HHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccccc--ccCCCCHHHHHHHHHHHH-------Hc-----
Q 047550          124 PAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI--NKRAFSEDEEERLMAAHR-------VY-----  189 (395)
Q Consensus       124 ~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l--~kg~WT~EED~~Ll~lv~-------~~-----  189 (395)
                      +||++.|..+|.++| +.|..|++.| ||.+..|++||+++....-  +++.||.||++.|+++|.       .+     
T Consensus       389 ~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~  466 (607)
T KOG0051|consen  389 PEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNT  466 (607)
T ss_pred             cchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhccccccc
Confidence            999999999999999 6799999999 9999999999999998874  899999999999999995       23     


Q ss_pred             --------------CCchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550          190 --------------GNKWAMIARLFPGRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       190 --------------G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~  220 (395)
                                    +-.|..|++.+++|+..|||.+|++++....
T Consensus       467 ~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s  511 (607)
T KOG0051|consen  467 DTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPS  511 (607)
T ss_pred             chhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHH
Confidence                          1249999999999999999999999997654

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=2.3e-14  Score=147.24  Aligned_cols=104  Identities=32%  Similarity=0.638  Sum_probs=99.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhh
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMI  196 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~I  196 (395)
                      ++.|.|+.-||+.|...|.+||...|.+|++.++-.++.||+.||..+|+|.+++..|+.|||++||.+.+.+...|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            46789999999999999999999899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550          197 ARLFPGRTDNAVKNHWHVIMARKYR  221 (395)
Q Consensus       197 A~~l~gRT~~qcknRw~~ilkkk~~  221 (395)
                      +..| ||+.+||-.||+.++-....
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s  108 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVS  108 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHh
Confidence            9999 99999999999999965443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.49  E-value=3.4e-14  Score=148.33  Aligned_cols=107  Identities=31%  Similarity=0.590  Sum_probs=100.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCch
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKW  193 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kW  193 (395)
                      ....+.|.|+..||+.|..+|++||+.+|..||..|.-|+++||+.||.++++|.++++.|+.|||+.|+.+..++|..|
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~w   94 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQW   94 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchh
Confidence            34567889999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550          194 AMIARLFPGRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       194 s~IA~~l~gRT~~qcknRw~~ilkkk~  220 (395)
                      +.||..+++||..+|.+||...+....
T Consensus        95 stia~~~d~rt~~~~~ery~~~~~~~~  121 (512)
T COG5147          95 STIADYKDRRTAQQCVERYVNTLEDLS  121 (512)
T ss_pred             hhhccccCccchHHHHHHHHHHhhhhh
Confidence            999999999999999999997775433

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.42  E-value=7.8e-13  Score=139.53  Aligned_cols=151  Identities=20%  Similarity=0.372  Sum_probs=127.9

Q ss_pred             cCCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCC--CCCCCCHHHHHHHHHHHH-------
Q 047550           65 SQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVC--SRGHWRPAEDSKLKELVA-------  135 (395)
Q Consensus        65 ~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~--~kg~WT~EED~~L~~lV~-------  135 (395)
                      .++.|+ +++++.|..+|.++| .+|.+|+..| ||.+..|+.||+++....-  ++|.||.||+++|+++|+       
T Consensus       383 ~rg~wt-~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWT-PEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCC-cchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            356664 899999999999998 7999999999 8899999999999988874  999999999999999996       


Q ss_pred             Hh------------------CCChHHHHHHHccCCChhhhhhhhhhcc-ccccccCCCCH-HHHHHHHHHHHHcCC----
Q 047550          136 LY------------------GPQNWNLIAEKLEGRSGKSCRLRWFNQL-DPRINKRAFSE-DEEERLMAAHRVYGN----  191 (395)
Q Consensus       136 ~y------------------G~~nW~kIAk~lpgRt~~QCr~RW~~~L-~p~l~kg~WT~-EED~~Ll~lv~~~G~----  191 (395)
                      .+                  ..-+|..|++.+.+|+..|||.+|..++ .+..+.+.|.. .+.-.|++-+..++.    
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~  539 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEES  539 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCC
Confidence            22                  1125999999999999999999999876 45667777876 466677777777662    


Q ss_pred             --chhhhhhcCCCCC-HHHHHHHHHHHHHH
Q 047550          192 --KWAMIARLFPGRT-DNAVKNHWHVIMAR  218 (395)
Q Consensus       192 --kWs~IA~~l~gRT-~~qcknRw~~ilkk  218 (395)
                        .|..|+...||.. +.+|+.+|..+.+.
T Consensus       540 ~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~  569 (607)
T KOG0051|consen  540 PIDWKSLAEYAPGESTGEELRLQFERLKKK  569 (607)
T ss_pred             ccCHHHHHHhCCCCCcHHHHHHHHHhHhhc
Confidence              4999999999988 99999999888765

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.40  E-value=3.4e-13  Score=98.34  Aligned_cols=47  Identities=49%  Similarity=0.906  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-CCChhhhhhhhhhcc
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQL  165 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-gRt~~QCr~RW~~~L  165 (395)
                      |++||+|||++|+++|.+||..+|..||..|+ +||..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999777999999999 999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.38  E-value=4.1e-13  Score=140.27  Aligned_cols=148  Identities=17%  Similarity=0.216  Sum_probs=133.0

Q ss_pred             ccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 047550           69 CYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEK  148 (395)
Q Consensus        69 ~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~  148 (395)
                      .+...||+.|..+|.+.+..+|..||..+..+++++|+.||..+++|.++++.|+.|||+.|+.+..++|+. |..||..
T Consensus        22 sw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~  100 (512)
T COG5147          22 SWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADY  100 (512)
T ss_pred             CCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccc
Confidence            345899999999999999999999999999999999999999999999999999999999999999999965 9999999


Q ss_pred             ccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          149 LEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       149 lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                      +++|+..+|.+||.+.+.+... .+|+..++...+..+..|+..|.++......+-...|.+++..+...
T Consensus       101 ~d~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~  169 (512)
T COG5147         101 KDRRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLR  169 (512)
T ss_pred             cCccchHHHHHHHHHHhhhhhc-cccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHH
Confidence            9999999999999999987655 88999888888888888888888888777777788888888666544

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.35  E-value=9e-13  Score=96.12  Aligned_cols=46  Identities=30%  Similarity=0.764  Sum_probs=41.7

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCc-hhhhhhcCC-CCCHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGNK-WAMIARLFP-GRTDNAVKNHWHVIM  216 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~k-Ws~IA~~l~-gRT~~qcknRw~~il  216 (395)
                      +++||+|||++|+++|.+||.. |..||..|+ |||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.29  E-value=1e-12  Score=135.29  Aligned_cols=141  Identities=16%  Similarity=0.193  Sum_probs=111.6

Q ss_pred             ccCCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHH
Q 047550           64 TSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWN  143 (395)
Q Consensus        64 ~~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~  143 (395)
                      +..+.| +..||+.|...|+++|...|.+|++.++..+++||+.||..+++|.+++..|+.|||++|+-+.....+. |.
T Consensus         5 ~kggvw-rntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~q-wr   82 (617)
T KOG0050|consen    5 IKGGVW-RNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQ-WR   82 (617)
T ss_pred             Eeccee-cccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCc-cc
Confidence            445555 4889999999999999999999999999999999999999999999999999999999999999999855 99


Q ss_pred             HHHHHccCCChhhhhhhhhhccccccccC----------CCCHHHH-HHHHHHHHHcCCchhhhhhcCCCCCHHHH
Q 047550          144 LIAEKLEGRSGKSCRLRWFNQLDPRINKR----------AFSEDEE-ERLMAAHRVYGNKWAMIARLFPGRTDNAV  208 (395)
Q Consensus       144 kIAk~lpgRt~~QCr~RW~~~L~p~l~kg----------~WT~EED-~~Ll~lv~~~G~kWs~IA~~l~gRT~~qc  208 (395)
                      .|+..| ||+..||.+||.++|.......          -|-.|=| ..+...++-.|.+|..+-..| .++...|
T Consensus        83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ePn~e~~~aRpd~~dmdEde~eM-l~eaRar  156 (617)
T KOG0050|consen   83 TIADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEIEPNQETNPARPDGFDMDEDEGEM-LSEARAR  156 (617)
T ss_pred             hHHHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcCCCccccccccCCcccchHHHHHH-HHHHHHH
Confidence            999999 9999999999999875433222          1333333 334444555566676666655 3444444

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.14  E-value=5.4e-11  Score=84.25  Aligned_cols=47  Identities=34%  Similarity=0.781  Sum_probs=44.2

Q ss_pred             cCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998763

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.14  E-value=2.9e-11  Score=91.56  Aligned_cols=59  Identities=20%  Similarity=0.281  Sum_probs=52.7

Q ss_pred             CCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 047550           71 CDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKL  130 (395)
Q Consensus        71 ~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L  130 (395)
                      +.+||..|..+|..++ .+|.+||+.|+.|+..+|+.||...|.+...+++||++||++|
T Consensus         2 T~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    2 TKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             -HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            3678999999999888 5899999999779999999999999999999999999999987

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.09  E-value=1.7e-10  Score=81.63  Aligned_cols=48  Identities=48%  Similarity=0.931  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      ++.||++||.+|+.++..||..+|..||..|++|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999997779999999999999999999998764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.02  E-value=4.2e-10  Score=78.57  Aligned_cols=43  Identities=37%  Similarity=0.842  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHH
Q 047550          173 AFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       173 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~i  215 (395)
                      +||+|||..|+.++.++| .+|..||..|++||..+|++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 8999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.96  E-value=1.2e-09  Score=76.22  Aligned_cols=45  Identities=49%  Similarity=0.870  Sum_probs=42.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550          121 HWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus       121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      +||++||+.|+.++..+|..+|..||+.|++|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999778999999999999999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.59  E-value=0.00012  Score=55.83  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=42.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChH---HHHHHHcc-CC-Chhhhhhhhhhcc
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQNW---NLIAEKLE-GR-SGKSCRLRWFNQL  165 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~nW---~kIAk~lp-gR-t~~QCr~RW~~~L  165 (395)
                      .+-.||+||..+++++++.+|.++|   ..|++.|. .| |..||+.+.+.+.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999997799   99999984 45 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.56  E-value=8.8e-05  Score=76.32  Aligned_cols=48  Identities=29%  Similarity=0.475  Sum_probs=44.4

Q ss_pred             cccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~il  216 (395)
                      +-...||.+||.+||+++..|| ++|..||.+++.||..+|+.+|.++.
T Consensus        70 i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   70 ILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            4456899999999999999999 99999999999999999999998776

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.55  E-value=0.00019  Score=54.77  Aligned_cols=46  Identities=24%  Similarity=0.437  Sum_probs=40.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCC-ch---hhhhhcCC-CC-CHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGN-KW---AMIARLFP-GR-TDNAVKNHWHVIM  216 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~-kW---s~IA~~l~-gR-T~~qcknRw~~il  216 (395)
                      +-.||+||..++++++..+|. +|   ..|++.|. .| |..||+.+.+++.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            457999999999999999996 99   99999874 45 9999999997765

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.54  E-value=0.00011  Score=75.74  Aligned_cols=93  Identities=22%  Similarity=0.346  Sum_probs=66.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccc-ccccCCC-------CHHHHHHHHH
Q 047550          113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP-RINKRAF-------SEDEEERLMA  184 (395)
Q Consensus       113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p-~l~kg~W-------T~EED~~Ll~  184 (395)
                      ++-.+-...||.+|+-+|+++++.||-+||..||.+++.|+..+|+++|.+++-. .+-.-+|       ...||..+-.
T Consensus        66 ~s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s~~~~~~~i~~~~~~~q~e~~~~~k  145 (438)
T KOG0457|consen   66 NSFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNSPIFPLPDISLGIGVNQDEDAAMAK  145 (438)
T ss_pred             CCCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcCccccccccccccCcchHHHhhhcc
Confidence            3445667799999999999999999999999999999999999999999986532 1211122       3444444433


Q ss_pred             H-HHHcCC-------------chhhhhhcCCCCCH
Q 047550          185 A-HRVYGN-------------KWAMIARLFPGRTD  205 (395)
Q Consensus       185 l-v~~~G~-------------kWs~IA~~l~gRT~  205 (395)
                      . +..++.             .=.+|+.+||+|.+
T Consensus       146 ~~~~~~~~~~~~pr~p~~~~p~~~e~~gyMp~R~d  180 (438)
T KOG0457|consen  146 NRAEPFQPTDLVPRKPGVSNPLRREISGYMPGRLD  180 (438)
T ss_pred             cccccCCCCCCCCCCCCCCCchHHHHhhhCccchh
Confidence            3 222222             13578888888865

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.34  E-value=0.00033  Score=63.71  Aligned_cols=54  Identities=20%  Similarity=0.386  Sum_probs=47.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHc---CC----chhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhh
Q 047550          170 NKRAFSEDEEERLMAAHRVY---GN----KWAMIARLFPGRTDNAVKNHWHVIMARKYREQS  224 (395)
Q Consensus       170 ~kg~WT~EED~~Ll~lv~~~---G~----kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~~~  224 (395)
                      ....||.|||.+|-+.|..|   |+    -+..++..| +||.-.|.=||+..+|+.|...-
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~i   63 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEAI   63 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHHH
Confidence            45689999999999999887   43    289999999 99999999999999999997653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.17  E-value=0.002  Score=60.84  Aligned_cols=99  Identities=21%  Similarity=0.396  Sum_probs=74.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHHc---cCCChhhhhhhhhhccc-cc--------------------cccCCCCH
Q 047550          121 HWRPAEDSKLKELVALYGPQNWNLIAEKL---EGRSGKSCRLRWFNQLD-PR--------------------INKRAFSE  176 (395)
Q Consensus       121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~l---pgRt~~QCr~RW~~~L~-p~--------------------l~kg~WT~  176 (395)
                      +|++++|-+|+..|..-.  +-..|+.-+   ..-|...+.+||+.+|- |.                    ..+..||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998764  577777666   34678889999998762 21                    24568999


Q ss_pred             HHHHHHHHHHHHcCC---chhhhhh----cC-CCCCHHHHHHHHHHHHHHHHH
Q 047550          177 DEEERLMAAHRVYGN---KWAMIAR----LF-PGRTDNAVKNHWHVIMARKYR  221 (395)
Q Consensus       177 EED~~Ll~lv~~~G~---kWs~IA~----~l-~gRT~~qcknRw~~ilkkk~~  221 (395)
                      +||+.|.........   .+.+|-.    .| ++||+.++.++|+.+.+..+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            999999997766543   3777643    23 789999999999976655543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.80  E-value=0.0011  Score=53.36  Aligned_cols=50  Identities=24%  Similarity=0.574  Sum_probs=34.7

Q ss_pred             cCCCCHHHHHHHHHHHHH------cC--C------chhhhhhcC----CCCCHHHHHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRV------YG--N------KWAMIARLF----PGRTDNAVKNHWHVIMARKYR  221 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~------~G--~------kWs~IA~~l----~gRT~~qcknRw~~ilkkk~~  221 (395)
                      +..||.+|...||+++.+      ++  +      -|..||..|    ..||+.||++||.+|.+ .++
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~-~Yk   68 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK-KYK   68 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH-HHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-HHH
Confidence            357999999999999877      21  1      299999876    35999999999998764 443

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.79  E-value=0.0022  Score=59.15  Aligned_cols=57  Identities=16%  Similarity=0.296  Sum_probs=47.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCc-------hhhhhhcCCCCCHHHHHHHHHHHHHHHHHhhhhh
Q 047550          169 INKRAFSEDEEERLMAAHRVYGNK-------WAMIARLFPGRTDNAVKNHWHVIMARKYREQSSA  226 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~k-------Ws~IA~~l~gRT~~qcknRw~~ilkkk~~~~~~~  226 (395)
                      .+...||.|||.+|-+.|..|+..       ...++..| +||.-+|..||+.+++++|...-..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Yee~I~~   66 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQEQIKL   66 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHHHHHHH
Confidence            346789999999999999888732       67777888 8999999999999999998765443

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.78  E-value=0.0012  Score=68.75  Aligned_cols=46  Identities=22%  Similarity=0.427  Sum_probs=42.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550          170 NKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       170 ~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i  215 (395)
                      ....||.+|..+|++++..||..|.+||.++++||..||--||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            3458999999999999999999999999999999999999999664

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.78  E-value=0.0016  Score=69.23  Aligned_cols=46  Identities=17%  Similarity=0.348  Sum_probs=42.0

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHV  214 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~  214 (395)
                      ..+..||++|..+|++++..||..|.+||.++++||..||--+|..
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~  296 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR  296 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence            3467899999999999999999999999999999999999888743

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.63  E-value=0.0023  Score=66.60  Aligned_cols=46  Identities=22%  Similarity=0.551  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ  164 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~  164 (395)
                      ....||.+|..+|++.++.|| .+|.+||.++++|+..||..|+.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            345899999999999999999 6799999999999999999999874

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.58  E-value=0.0024  Score=67.82  Aligned_cols=47  Identities=28%  Similarity=0.680  Sum_probs=43.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ  164 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~  164 (395)
                      ..++.||.+|..+|++.|+.|| .+|.+||.++.+||..||-.++.++
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            3567899999999999999999 6799999999999999999999864

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.52  E-value=0.0034  Score=49.16  Aligned_cols=50  Identities=12%  Similarity=0.306  Sum_probs=32.4

Q ss_pred             cCCCCHHHHHHHHHHHHHcC-------Cc--hhhhhhcCC-CCCHHHHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYG-------NK--WAMIARLFP-GRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G-------~k--Ws~IA~~l~-gRT~~qcknRw~~ilkkk~  220 (395)
                      +.+||.|||..|++.|+++.       ++  |.++++.-+ .+|-...|+||.+.|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            45899999999999997652       12  999998877 8999999999988776544

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.46  E-value=0.0037  Score=50.32  Aligned_cols=47  Identities=34%  Similarity=0.581  Sum_probs=33.8

Q ss_pred             CCCCCHHHHHHHHHHHHH--h----C--CC-----hHHHHHHHcc----CCChhhhhhhhhhcc
Q 047550          119 RGHWRPAEDSKLKELVAL--Y----G--PQ-----NWNLIAEKLE----GRSGKSCRLRWFNQL  165 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~--y----G--~~-----nW~kIAk~lp----gRt~~QCr~RW~~~L  165 (395)
                      |..||.+|...|+.++..  +    +  ..     -|..||..|.    .||+.||+.+|.++.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            357999999999999988  2    1  11     3999999993    599999999998764

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.37  E-value=0.003  Score=57.60  Aligned_cols=49  Identities=22%  Similarity=0.420  Sum_probs=42.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC------hHHHHHHHccCCChhhhhhhhhhcccc
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQ------NWNLIAEKLEGRSGKSCRLRWFNQLDP  167 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~------nW~kIAk~lpgRt~~QCr~RW~~~L~p  167 (395)
                      +...||.|||.+|.+.|-.|-..      -+.+|++.| +||...|.-||+.+++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK   57 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence            56789999999999999998321      389999999 99999999999998864

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.04  E-value=0.0074  Score=47.27  Aligned_cols=51  Identities=24%  Similarity=0.317  Sum_probs=33.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC------C--hHHHHHHHcc-CCChhhhhhhhhhcccccc
Q 047550          119 RGHWRPAEDSKLKELVALYGP------Q--NWNLIAEKLE-GRSGKSCRLRWFNQLDPRI  169 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~------~--nW~kIAk~lp-gRt~~QCr~RW~~~L~p~l  169 (395)
                      +.+||.|||+.|++.|..+..      +  =|.++++.-+ .+|-.+-|+||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            458999999999999976521      1  2999999987 8999999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.92  E-value=0.05  Score=62.65  Aligned_cols=100  Identities=13%  Similarity=0.317  Sum_probs=80.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhh-------hhhhc------c----------------------
Q 047550          121 HWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRL-------RWFNQ------L----------------------  165 (395)
Q Consensus       121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~-------RW~~~------L----------------------  165 (395)
                      .|+.-+=..++.+..+||..+-..||..|.|++...++.       ||..+      +                      
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999889999999999999988874       21111      0                      


Q ss_pred             ------c---------cccccCCCCHHHHHHHHHHHHHcC-Cchhhhhh------------cCCCCCHHHHHHHHHHHHH
Q 047550          166 ------D---------PRINKRAFSEDEEERLMAAHRVYG-NKWAMIAR------------LFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       166 ------~---------p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~------------~l~gRT~~qcknRw~~ilk  217 (395)
                            +         +..++..||+|||..|+-.+.+|| ++|.+|-.            .|..||+..+..|..++++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                  0         112344699999999999999999 78999843            2468999999999999997


Q ss_pred             HHH
Q 047550          218 RKY  220 (395)
Q Consensus       218 kk~  220 (395)
                      -.-
T Consensus       986 ~~~  988 (1033)
T PLN03142        986 LIE  988 (1033)
T ss_pred             HHH
Confidence            653

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.73  E-value=0.0099  Score=59.52  Aligned_cols=46  Identities=24%  Similarity=0.464  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          172 RAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      ..|+.+|+.+|++.+.-.| ++|..||.+++.|+...||.+|.++..
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            4699999999999999999 899999999999999999999987663

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.51  E-value=0.044  Score=43.33  Aligned_cols=48  Identities=29%  Similarity=0.459  Sum_probs=39.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcC----C-------------chhhhhhcC-----CCCCHHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYG----N-------------KWAMIARLF-----PGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G----~-------------kWs~IA~~l-----~gRT~~qcknRw~~ilkk  218 (395)
                      +..||.+|.+.|+++|.+|.    +             -|..|+..|     +.||..+|+.+|..+...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            45799999999999998862    1             299999865     349999999999988754

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.34  E-value=0.014  Score=58.58  Aligned_cols=50  Identities=22%  Similarity=0.411  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      +--..|+.+|+-+|++.....|-+||..||.+++.|+...|+++|.+++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34458999999999999999999999999999999999999999998765

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.87  E-value=0.022  Score=52.64  Aligned_cols=50  Identities=20%  Similarity=0.445  Sum_probs=41.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC------hHHHHHHHccCCChhhhhhhhhhcccc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQ------NWNLIAEKLEGRSGKSCRLRWFNQLDP  167 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~------nW~kIAk~lpgRt~~QCr~RW~~~L~p  167 (395)
                      .++..||.|||.+|.+.|-.|+..      -...++..| +|+..+|..||+.+++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk   58 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRK   58 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHH
Confidence            356799999999999999998633      266777777 89999999999877764

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=94.69  E-value=0.046  Score=43.21  Aligned_cols=47  Identities=32%  Similarity=0.413  Sum_probs=39.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-----C-----------hHHHHHHHcc-----CCChhhhhhhhhhcc
Q 047550          119 RGHWRPAEDSKLKELVALYGP-----Q-----------NWNLIAEKLE-----GRSGKSCRLRWFNQL  165 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~-----~-----------nW~kIAk~lp-----gRt~~QCr~RW~~~L  165 (395)
                      +..||.+|...|+++|.+|..     .           -|..|+..|.     .|+..+++.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            458999999999999999821     0           2999999992     499999999998765

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.91  E-value=0.15  Score=52.51  Aligned_cols=52  Identities=15%  Similarity=0.340  Sum_probs=46.4

Q ss_pred             CCCCHHHHHHHHHHHHHcCCchhhhhhc-----CCC-CCHHHHHHHHHHHHHHHHHhh
Q 047550          172 RAFSEDEEERLMAAHRVYGNKWAMIARL-----FPG-RTDNAVKNHWHVIMARKYREQ  223 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~-----l~g-RT~~qcknRw~~ilkkk~~~~  223 (395)
                      ..||.||-+-|+++++.|.-+|-.||..     ++. ||-..+|+||+.+.++-++..
T Consensus       131 n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr  188 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKAR  188 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHcc
Confidence            6899999999999999999999999976     666 999999999999997766443

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.65  E-value=0.18  Score=43.96  Aligned_cols=52  Identities=23%  Similarity=0.453  Sum_probs=41.1

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCC----chhhhhhc------------CCCCCHHHHHHHHHHHHHHH
Q 047550          168 RINKRAFSEDEEERLMAAHRVYGN----KWAMIARL------------FPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       168 ~l~kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~------------l~gRT~~qcknRw~~ilkkk  219 (395)
                      ..++..||+|||.-|+-.+.+||-    .|..|-..            |..||+..+..|-..+++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            455678999999999999999995    69888642            46799999999999999643

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.49  E-value=0.3  Score=39.65  Aligned_cols=45  Identities=27%  Similarity=0.494  Sum_probs=34.3

Q ss_pred             CCCHHHHHHHHHHHHHc---CC----------chhhhhhcC---CC--CCHHHHHHHHHHHHH
Q 047550          173 AFSEDEEERLMAAHRVY---GN----------KWAMIARLF---PG--RTDNAVKNHWHVIMA  217 (395)
Q Consensus       173 ~WT~EED~~Ll~lv~~~---G~----------kWs~IA~~l---~g--RT~~qcknRw~~ilk  217 (395)
                      .||+++++.|++++.+.   |+          .|..|+..|   .|  .|..||++||..+.+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~   63 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK   63 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence            49999999999998653   21          199998876   23  578999999866653

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=90.48  E-value=0.44  Score=48.11  Aligned_cols=50  Identities=18%  Similarity=0.237  Sum_probs=39.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcC----------CchhhhhhcC----CCCCHHHHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYG----------NKWAMIARLF----PGRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G----------~kWs~IA~~l----~gRT~~qcknRw~~ilkkk~  220 (395)
                      ...|+.+|-..||++..+..          .-|..||..+    .-||+.+||++|.++.++-.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk  117 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYK  117 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence            36899999999999976532          2399999854    23999999999999885533

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=87.96  E-value=0.77  Score=40.07  Aligned_cols=49  Identities=20%  Similarity=0.301  Sum_probs=37.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC---ChHHHHHHHc---c---------CCChhhhhhhhhh
Q 047550          115 KVCSRGHWRPAEDSKLKELVALYGP---QNWNLIAEKL---E---------GRSGKSCRLRWFN  163 (395)
Q Consensus       115 p~~~kg~WT~EED~~L~~lV~~yG~---~nW~kIAk~l---p---------gRt~~QCr~RW~~  163 (395)
                      +..++..||.+||.-|+-.+.+||-   +.|.+|-..+   |         .||+..+..|-..
T Consensus        45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~t  108 (118)
T PF09111_consen   45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNT  108 (118)
T ss_dssp             STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHH
T ss_pred             CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHH
Confidence            3667889999999999999999998   7899998766   2         4777777777544

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=86.71  E-value=1.6  Score=41.50  Aligned_cols=93  Identities=15%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             cCCCcchhHHHHHhcCCCCChHHHHhhcC---CCCchhHHHHhhcCC-CC--------------------CCCCCCCCHH
Q 047550           70 YCDSSDHQKSDLAAGGDSDNNNKVDESVD---GYEDMEDVKKMDGGL-SK--------------------VCSRGHWRPA  125 (395)
Q Consensus        70 ~~~~eD~~L~~lv~~~~~~dW~~IA~~lp---gRt~~qcr~Rw~~~l-~p--------------------~~~kg~WT~E  125 (395)
                      +++..|..|+..|.+..  +-..|+..+.   ..+-.....||+..+ +|                    .-.+-+||.+
T Consensus         2 W~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~~   79 (199)
T PF13325_consen    2 WKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSKE   79 (199)
T ss_pred             CCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCHH
Confidence            34777888998888876  6777777765   456666777885431 11                    2245789999


Q ss_pred             HHHHHHHHHHHhCC--ChHHHHHHH----c-cCCChhhhhhhhhhc
Q 047550          126 EDSKLKELVALYGP--QNWNLIAEK----L-EGRSGKSCRLRWFNQ  164 (395)
Q Consensus       126 ED~~L~~lV~~yG~--~nW~kIAk~----l-pgRt~~QCr~RW~~~  164 (395)
                      |++.|........+  ..+.+|-..    | ++||+++...+|+..
T Consensus        80 EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm  125 (199)
T PF13325_consen   80 EEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLM  125 (199)
T ss_pred             HHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence            99999997765532  246666432    3 579999999999864

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=85.42  E-value=1.1  Score=46.12  Aligned_cols=45  Identities=18%  Similarity=0.446  Sum_probs=41.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN  163 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~  163 (395)
                      .--+||.+|-++..++...+| -++..|+..+|.|..+|++.+|.+
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHH
Confidence            345899999999999999999 569999999999999999999865

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=83.95  E-value=2.6  Score=30.62  Aligned_cols=41  Identities=17%  Similarity=0.305  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          176 EDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       176 ~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      ++++..++.++...|-.|.+||..+ |.+...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            4677788888888999999999999 8999999998877664

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=83.77  E-value=1.7  Score=45.85  Aligned_cols=48  Identities=15%  Similarity=0.311  Sum_probs=42.1

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550          115 KVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN  163 (395)
Q Consensus       115 p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~  163 (395)
                      .......||.||--++.++...|| +++.+|-+.||.|+-..+...|..
T Consensus       183 r~~~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~LP~rsLaSlvqyYy~  230 (534)
T KOG1194|consen  183 RTEFPDEWTAEDIVLFEQAFQFFG-KDFHKIRQALPHRSLASLVQYYYS  230 (534)
T ss_pred             cCCCcccchHHHHHHHHHHHHHhc-ccHHHHHHHccCccHHHHHHHHHH
Confidence            344567899999999999999999 789999999999999999887764

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=83.56  E-value=2  Score=44.44  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          172 RAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                      .+|+.+|-++..+++...|..++.|+.+||.|...|||-+|.+--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            37999999999999999999999999999999999999999765444

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=82.47  E-value=9  Score=40.62  Aligned_cols=48  Identities=10%  Similarity=0.200  Sum_probs=42.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          170 NKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       170 ~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      -...||.||--++-++...||..+.+|-+.||.|+-..+...|....|
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK  233 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence            345799999999999999999999999999999999999988876654

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=81.99  E-value=2  Score=35.16  Aligned_cols=30  Identities=27%  Similarity=0.423  Sum_probs=17.5

Q ss_pred             CCCCCCCCCHHHHHHH--------HHHHHHhCCChHHHHHH
Q 047550          115 KVCSRGHWRPAEDSKL--------KELVALYGPQNWNLIAE  147 (395)
Q Consensus       115 p~~~kg~WT~EED~~L--------~~lV~~yG~~nW~kIAk  147 (395)
                      |....|-||+|+|+.|        .+|+++||   +..|+.
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~   80 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER   80 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence            6677899999999998        45566676   555554

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=81.62  E-value=2  Score=43.44  Aligned_cols=47  Identities=26%  Similarity=0.389  Sum_probs=37.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh----CC-----ChHHHHHHHcc----CCChhhhhhhhhhcc
Q 047550          119 RGHWRPAEDSKLKELVALY----GP-----QNWNLIAEKLE----GRSGKSCRLRWFNQL  165 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~y----G~-----~nW~kIAk~lp----gRt~~QCr~RW~~~L  165 (395)
                      ...|+.+|-..|+++..+.    ..     .-|..||..+.    -|++.||+.+|.++.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3689999999999988754    11     23999999772    399999999998754

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=80.10  E-value=3.7  Score=33.15  Aligned_cols=44  Identities=30%  Similarity=0.584  Sum_probs=33.9

Q ss_pred             CCCHHHHHHHHHHHHHh---CCC---------hHHHHHHHcc---C--CChhhhhhhhhhc
Q 047550          121 HWRPAEDSKLKELVALY---GPQ---------NWNLIAEKLE---G--RSGKSCRLRWFNQ  164 (395)
Q Consensus       121 ~WT~EED~~L~~lV~~y---G~~---------nW~kIAk~lp---g--Rt~~QCr~RW~~~  164 (395)
                      .||+++++.|++++.+.   |..         .|..|+..|.   |  .+..||++||..+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l   61 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL   61 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence            59999999999988655   212         3999999983   2  5678999998654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	395
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-27
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		2e-26
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-26
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		3e-26
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		4e-25
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		7e-21
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		5e-15
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		1e-11
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-10
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		7e-10
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-09
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-09
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		4e-09
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		2e-06

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  120 bits (300), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/101 (52%), Positives = 71/101 (70%)
Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED K+ ELV  YG + W LIA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 7   KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEE 66
Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           +  +  AH+V GN+WA IA+L PGRTDNAVKNHW+  + RK
Sbjct: 67  DRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 107

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 72/101 (71%)
Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ +LV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 64  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/101 (49%), Positives = 72/101 (71%)
Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ +LV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63
Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 64  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  116 bits (290), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 92/160 (57%), Gaps = 3/160 (1%)
Query: 60  GHIVTSQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSR 119
           GH+  ++   +    D +   L     +D+   +   +    D++   +    L+    +
Sbjct: 2   GHLGKTR---WTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIK 58
Query: 120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEE 179
           G W   ED ++ +LV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E+
Sbjct: 59  GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEED 118
Query: 180 ERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
             +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 119 RIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/102 (50%), Positives = 71/102 (69%)
Query: 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSED 177
           ++G W   ED ++ E V  YGP+ W+ IA+ L+GR GK CR RW N L+P + K +++E+
Sbjct: 26  NKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 85
Query: 178 EEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           E+  +  AH+  GN+WA IA+L PGRTDNAVKNHW+  M RK
Sbjct: 86  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 45/101 (44%), Positives = 66/101 (65%)
Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G +  AED  ++E V   GPQNW  I   L  RS K CR RWFN LDP + K A++ +E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61
Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           +E +   +   G+KW++IA+L PGRTDNA+KN W+  ++++
Sbjct: 62  DETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
Query: 115 KVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAF 174
           K   +  + P ED  LK  VA +G  +W +IA     R+ + CR RW N L P I+   +
Sbjct: 7   KAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPW 65
Query: 175 SEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI 215
           + +E+  L+   + YG +WA+IA+ FPGRTD  +KN W  I
Sbjct: 66  TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTI 106

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 57/100 (57%)
Query: 126 EDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAA 185
           ED KL++LV  YG ++W  I++ +  R+ + CR RW N ++P +    +S +E+  L   
Sbjct: 8   EDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQK 67
Query: 186 HRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSS 225
           +  YG KW  I++    R+DN ++N W +I   + + Q S
Sbjct: 68  YAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           + K +++E+E+  L  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 3   VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 53

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           + K +++E+E+  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           +G W   ED ++ ELV  YGP+ W++IA+ L+GR GK CR RW N L+P
Sbjct: 3   KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           +G W   ED +L +LV  YGP+ W++IA+ L+GR GK CR RW N L+P
Sbjct: 3   KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           +G W   ED ++ +LV  YGP+ W++IA+ L+GR GK CR RW N L+P
Sbjct: 3   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 29/54 (53%)
Query: 122 WRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFS 175
           WR  ED  LK  V  YG   W+ IA  L  +S K C+ RW+  LDP I K  +S
Sbjct: 12  WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	395
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-62
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-62
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	1e-60
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-59
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	3e-59
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-58
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-35
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	5e-09
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	7e-33
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-07
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	2e-27
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-26
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-25
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	6e-08
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	8e-13
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-08
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	9e-11
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-10
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-04
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	8e-09
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	2e-07
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-08
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	3e-06
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	1e-08
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-06
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	3e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	4e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	4e-06
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	7e-06
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	1e-05
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	3e-05
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	3e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	3e-05

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  196 bits (500), Expect = 1e-62
 Identities = 52/130 (40%), Positives = 74/130 (56%), Gaps = 4/130 (3%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G +  AED  ++E V   GPQNW  I   L  RS K CR RWFN LDP + K A++ +E
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEE 61

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAY----YRRRKFL 234
           +E +   +   G+KW++IA+L PGRTDNA+KN W+  ++++    S+        R K  
Sbjct: 62  DETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKKR 121

Query: 235 NQVVDDKKLE 244
                 KKLE
Sbjct: 122 KAADVPKKLE 131

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  194 bits (496), Expect = 2e-62
 Identities = 33/107 (30%), Positives = 59/107 (55%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +  +   ED KL++LV  YG ++W  I++ +  R+ + CR RW N ++P +    +S +E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSS 225
           +  L   +  YG KW  I++    R+DN ++N W +I   + + Q S
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  191 bits (487), Expect = 1e-60
 Identities = 51/101 (50%), Positives = 70/101 (69%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ E V  YGP+ W+ IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 27  KGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 86

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           +  +  AH+  GN+WA IA+L PGRTDNAVKNHW+  M RK
Sbjct: 87  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  188 bits (479), Expect = 1e-59
 Identities = 50/101 (49%), Positives = 72/101 (71%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ +LV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 4   KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 63

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 64  DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  187 bits (478), Expect = 3e-59
 Identities = 40/110 (36%), Positives = 60/110 (54%), Gaps = 1/110 (0%)

Query: 115 KVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAF 174
           K   +  + P ED  LK  VA +G  +W +IA     R+ + CR RW N L P I+   +
Sbjct: 7   KAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPW 65

Query: 175 SEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQS 224
           + +E+  L+   + YG +WA+IA+ FPGRTD  +KN W  I  +    Q+
Sbjct: 66  TAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQT 115

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  187 bits (476), Expect = 2e-58
 Identities = 50/101 (49%), Positives = 72/101 (71%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDE 178
           +G W   ED ++ +LV  YGP+ W++IA+ L+GR GK CR RW N L+P + K +++E+E
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 117

Query: 179 EERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK 219
           +  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M RK
Sbjct: 118 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  126 bits (320), Expect = 2e-35
 Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 5/104 (4%)

Query: 111 GGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 170
           G L K      W   ED KLK+LV   G  +W +IA  L  R+   C+ RW   L+P + 
Sbjct: 2   GHLGK----TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELI 57

Query: 171 KRAFSEDEEERLMAAHRVYGNK-WAMIARLFPGRTDNAVKNHWH 213
           K  ++++E++R++   + YG K W++IA+   GR     +  WH
Sbjct: 58  KGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 101

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRI 169
           +  W   ED  + +     G + W  IA+ L GR+  + +  W + +  ++
Sbjct: 110 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  116 bits (294), Expect = 7e-33
 Identities = 26/69 (37%), Positives = 31/69 (44%)

Query: 111 GGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN 170
           G        G WR  ED  LK  V  YG   W+ IA  L  +S K C+ RW+  LDP I 
Sbjct: 1   GSSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60

Query: 171 KRAFSEDEE 179
           K  +S    
Sbjct: 61  KTEWSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 167 PRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWH 213
                  +   E+E L AA   YG N+W+ IA L   ++    K  W+
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWY 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  101 bits (255), Expect = 2e-27
 Identities = 25/49 (51%), Positives = 34/49 (69%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           +G W   ED +L +LV  YGP+ W++IA+ L+GR GK CR RW N L+P
Sbjct: 3   KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 99.2 bits (248), Expect = 2e-26
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           G S    +  W   ED +L+ LV  +G Q+W  +A     R+ + C+ RW   L  
Sbjct: 1   GSSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 96.9 bits (242), Expect = 1e-25
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           +  W   ED KLK+LV   G  +W +IA  L  R+   C+ RW   L+P
Sbjct: 3   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 169 INKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWH 213
           + K  ++ +E+E+L       G + W +IA   P RTD   ++ W 
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 46

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 62.1 bits (151), Expect = 8e-13
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRA 173
           +  W   E+ KL  L  L   Q W  IA  + GR+   C   +   LD    + +
Sbjct: 9   KTEWSREEEEKLLHLAKLMPTQ-WRTIAPII-GRTAAQCLEHYEFLLDKAAQRDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 166 DPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWH 213
                K  +S +EEE+L+   ++   +W  IA +  GRT      H+ 
Sbjct: 4   GSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPI-IGRTAAQCLEHYE 50

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 55.8 bits (135), Expect = 9e-11
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAE--KLEGRSGKSCRLRWFN 163
           R  W   ED  L+  V  YG  NW+ I    K   R+    + RW  
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 171 KRAFSEDEEERLMAAHRVYGN-KWAMIARL--FPGRTDNAVKNHWHVIMARKYR 221
           ++A+  +E++ L +  R YG   W+ I     F  RT   +K+ W  +  +K +
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM--KKLK 53

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD 166
           G S       W   E+  L E V   G  NW  +A ++  ++ + C   +     
Sbjct: 1   GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 170 NKRAFSEDEEERLMAAHRVYGNK-WAMIARLFPGRTDNAVKNHWH 213
              +++  EE  L+ A    G   W  +A     +T    + H+ 
Sbjct: 7   GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 51

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 50.9 bits (122), Expect = 8e-09
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAE--KLEGRSGKSCRLRWFNQLDPRINKRAFSE 176
           R  W   ED  L+  V  YG  NW+ I    K   R+    + RW       + K     
Sbjct: 10  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT-----MKKLKLIS 64

Query: 177 DEEE 180
            + E
Sbjct: 65  SDSE 68

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 167 PRINKRAFSEDEEERLMAAHRVYGN-KWAMIARL--FPGRTDNAVKNHWHVIMARKYREQ 223
               ++A+  +E++ L +  R YG   W+ I     F  RT   +K+ W  +   K    
Sbjct: 6   RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISS 65

Query: 224 SS 225
            S
Sbjct: 66  DS 67

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAE--KLEGRSGKSCRLRWFNQLDPRIN 170
           +  W   E   +K  V  YG  NW  I++      R+    + RW       +N
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 55

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 171 KRAFSEDEEERLMAAHRVYGN-KWAMIARLFP--GRTDNAVKNHWHVIM 216
           K+ ++ +E E + A  + YG   WA I++ +P   RT   +K+ W  + 
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 109 MDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAE--KLEGRSGKSCRLRWFNQLD 166
           M+   + +  +  W   E   +K  V  YG  NW  I++      R+    + RW     
Sbjct: 1   MEDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60

Query: 167 PRIN 170
             +N
Sbjct: 61  LGMN 64

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 163 NQLDPRINKRAFSEDEEERLMAAHRVYGN-KWAMIARLFP--GRTDNAVKNHWHVIM 216
           +       K+ ++ +E E + A  + YG   WA I++ +P   RT   +K+ W  + 
Sbjct: 3   DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRW 161
            G + P E  KLKEL   +G   W  I   L GRS  S + R 
Sbjct: 23  VGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRC 63

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 152 RSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNH 211
               S           R +   ++ +E E+L      +GN WA I     GR+ ++VK+ 
Sbjct: 4   HHHHSSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDR 62

Query: 212 WHVI 215
             ++
Sbjct: 63  CRLM 66

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 50.0 bits (118), Expect = 3e-07
 Identities = 26/191 (13%), Positives = 66/191 (34%), Gaps = 16/191 (8%)

Query: 118 SRGHWRPAEDSKLKELVAL-----YGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKR 172
           ++  +   ED  + ++V            ++ I+  +   +G S R R+   L  R+   
Sbjct: 7   NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY- 65

Query: 173 AFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDN---AVKNHWHVIMARKYREQSSAYYR 229
            +  D+  +L+      GN      ++ P        A +++   I  +K   +   +  
Sbjct: 66  VYEVDKFGKLV--RDDDGNLIKT--KVLPPSIKRKFSADEDYTLAIAVKKQFYRDL-FQI 120

Query: 230 RRKFLNQVVDDKKLEAAVAANDLEPNINNVHDISSSSVSFLDSSSPRKPSFQAPIGYKSD 289
                  ++ D+    A+A  ++  + N+V     +  ++   S  R+            
Sbjct: 121 DPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQS--RRGPIAREFFKHFA 178

Query: 290 DSFSQKSMQQW 300
           +  +  +   W
Sbjct: 179 EEHAAHTENAW 189

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 15/88 (17%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 158 RLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA 217
                +     +  + ++E+E          +G  W+ IAR+   +T +  KN +     
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFN--- 59

Query: 218 RKYREQSSAYYRRRKFLNQVVDDKKLEA 245
                     Y++R+ L++++   KL+ 
Sbjct: 60  ----------YKKRQNLDEILQQHKLKM 77

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 7e-07
 Identities = 60/456 (13%), Positives = 116/456 (25%), Gaps = 154/456 (33%)

Query: 16  KMNSMTNHYKNTINANAPTIDSSMDMFAAVAHM--GSLSASPRKNSGHIVTSQN------ 67
           +       YK+ ++        + D    V  M    LS   ++   HI+ S++      
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILS---KEEIDHIIMSKDAVSGTL 65

Query: 68  ---ICYCDSSDHQKSDLAAGGDSDN-----------NNKVDESVDGYEDMEDVKKMDGGL 113
                     +             N             +       Y +  D    D   
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN-- 123

Query: 114 SKVCSRGH-WRPAEDSKLKELVALYGPQNWNLIAEKLEGR--SGKSC------------- 157
            +V ++ +  R     KL++  AL   +    +   ++G   SGK+              
Sbjct: 124 -QVFAKYNVSRLQPYLKLRQ--ALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQC 178

Query: 158 ----RLRWFN-------------------QLDPRINKRAFS--------EDEEERL--MA 184
               ++ W N                   Q+DP    R+             +  L  + 
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 185 AHRVYGNK-------W-AMIARLFPGR------T-DNAVKNHWHVIMARKYREQSSAYYR 229
             + Y N          A     F         T    V +    + A      S  ++ 
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTD---FLSAATTTHISLDHHS 295

Query: 230 R-----------RKFLNQVVDDKKLEAA---------VAA----------NDLEPNINNV 259
                        K+L+    D   E           +A           N    N + +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 260 HDISSSSVSFLDSSSPRKPSFQ--------APIGYK-----------SDDSFSQKSMQQW 300
             I  SS++ L+ +  RK  F         A I              SD       + ++
Sbjct: 356 TTIIESSLNVLEPAEYRK-MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414

Query: 301 GMIMKDGASFTVSSPYTHHHHHQQFLMPMQHSSNYH 336
            ++ K     T     +    + +  + +++    H
Sbjct: 415 SLVEKQPKEST----ISIPSIYLELKVKLENEYALH 446

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 43/317 (13%), Positives = 80/317 (25%), Gaps = 85/317 (26%)

Query: 34  TIDSSMDMFAAVAHMGS-------LSASPRKNSG-------HIVTSQNICYCDSSDHQKS 79
           T D    +                L+ +PR+ S         + T  N  + +       
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT- 357

Query: 80  DLAAGGDSDNNNKVDESVDGYEDM----EDVKKMDGGLSKVCSRGHWRPAEDSKLKELVA 135
                  S N  +  E    ++ +             LS +     W    D    +   
Sbjct: 358 ---IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI-----W---FDVIKSD--- 403

Query: 136 LYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEE-ERLMAAHRVYGNKWA 194
                   ++  KL      S   +   +    I         + E   A HR   + + 
Sbjct: 404 ---VM---VVVNKLHK---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 195 MIAR-----LFPGRTDNAVKNH--WHVI--------------------MARKYREQSSAY 227
           +        L P   D    +H   H+                     + +K R  S+A+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514

Query: 228 YRRRKFLNQVVDDKKLEAAVAANDLEPNINNVHDISSSSVSFLDSSSP---RKP------ 278
                 LN +   K  +  +  ND +     V+ I    + FL                 
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYE-RLVNAI----LDFLPKIEENLICSKYTDLLR 569

Query: 279 -SFQAPIGYKSDDSFSQ 294
            +  A      +++  Q
Sbjct: 570 IALMAEDEAIFEEAHKQ 586

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 44.8 bits (105), Expect = 4e-06
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 10/86 (11%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAE----KLEGRSGKSCRLRWFN-----QLDPRI 169
           R  +  AE   L E V   G   W  +        + R+    + +W        + P+ 
Sbjct: 17  RRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ 76

Query: 170 -NKRAFSEDEEERLMAAHRVYGNKWA 194
                  +D  +R++AAH  +  +  
Sbjct: 77  RRGEPVPQDLLDRVLAAHAYWSQQQG 102

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 167 PRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
                  ++ +E+E        +G +W  I++L   RT   VK++     AR+Y + 
Sbjct: 5   SSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSY-----ARQYFKN 56

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 43.5 bits (102), Expect = 7e-06
 Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 10/90 (11%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAE----KLEGRSGKSCRLRWFNQLDPRI----- 169
           R  +  AE   L + V   G   W  +        + R+    + +W   +         
Sbjct: 13  RRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQ 72

Query: 170 -NKRAFSEDEEERLMAAHRVYGNKWAMIAR 198
                  ++   R++ AH  +  +     +
Sbjct: 73  RRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 10/51 (19%), Positives = 20/51 (39%)

Query: 162 FNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHW 212
             +       R ++E E   L+ A  +Y + W  ++     RT +    H+
Sbjct: 9   LAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 1/46 (2%)

Query: 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163
           +   W   E   L E + +Y   +WN ++E +  R+   C L +  
Sbjct: 17  AGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLR 61

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 10/86 (11%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAE----KLEGRSGKSCRLRWFNQLDPRI----- 169
           R  +  AE   L E V   G   W  +       +  R+    + +W   +         
Sbjct: 31  RRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQ 90

Query: 170 -NKRAFSEDEEERLMAAHRVYGNKWA 194
                  ++  +R++AA   +    +
Sbjct: 91  RRGAPVPQELLDRVLAAQAYWSVDSS 116

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 121 HWRPAEDSKLKELVALYGPQNWNLIAEKL-EGRSGKSCRLRWFN 163
           +W   E+  L +     G  NW  IA+ +   R+ + CR  +  
Sbjct: 11  NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 3/43 (6%)

Query: 122 WRPAEDSKLKELVALY---GPQNWNLIAEKLEGRSGKSCRLRW 161
           W   +   L+  +  Y       W+ IA  +  +S + C  R+
Sbjct: 21  WTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 63

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 163 NQLDPRINKRAFSEDEEERLMAAHRVY----GNKWAMIARLFPGRTDNAVKNHWHVIMA 217
            +   R  +  +++++++ L  A + Y     + W  IAR  P ++       + ++++
Sbjct: 10  RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 10/81 (12%)

Query: 122 WRPAEDSKLKELVALYGPQNWNLIAE----KLEGRSGKSCRLRWFN-----QLDPRI-NK 171
           +  AE   L E V   G   W  +        + R+    + +W        + P+    
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 172 RAFSEDEEERLMAAHRVYGNK 192
               +D  +R++AAH  +  +
Sbjct: 63  EPVPQDLLDRVLAAHAYWSQQ 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	395
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.97
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.95
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.93
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.91
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.91
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.89
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.89
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.82
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.77
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.7
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.68
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.68
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.66
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.65
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.65
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.64
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.63
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.6
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.6
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.6
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.58
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.58
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.57
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.56
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.55
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.53
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.53
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.53
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.53
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.52
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.52
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.49
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.46
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.46
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.43
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.14
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.36
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.35
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.31
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.3
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.95
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.26
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.25
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.25
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.24
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.2
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.18
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.17
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.13
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.04
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.92
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.9
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.86
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.79
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.78
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.74
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.65
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.51
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.47
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.44
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.4
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.38
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.3
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.21
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.17
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.16
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.23
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.97
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.95
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.88
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.8
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.66
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.44
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.42
2crg_A	70	Metastasis associated protein MTA3; transcription	97.39
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.37
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.3
2crg_A	70	Metastasis associated protein MTA3; transcription	97.3
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.22
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.03
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	97.01
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.97
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.83
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.92
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.64
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	93.48
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.91
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.08
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	85.96

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=7.6e-42  Score=305.89  Aligned_cols=153  Identities=36%  Similarity=0.717  Sum_probs=113.1

Q ss_pred             CCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHH
Q 047550           66 QNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLI  145 (395)
Q Consensus        66 k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kI  145 (395)
                      ++-| +++||+.|..+|..++..+|..||..|++|++.||+.||.++++|.+++|+||+|||++|+++|.+||..+|..|
T Consensus         6 k~~W-t~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~I   84 (159)
T 1h89_C            6 KTRW-TREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVI   84 (159)
T ss_dssp             --------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             CCCC-CHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHH
Confidence            4444 499999999999999999999999999999999999999999999999999999999999999999998789999


Q ss_pred             HHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550          146 AEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       146 Ak~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk  219 (395)
                      |+.|||||+.||++||.++|+|.+++++||+|||.+|++++.+||++|+.||+.|||||+++|++||+.+++++
T Consensus        85 a~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C           85 AKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=4.8e-39  Score=278.33  Aligned_cols=127  Identities=42%  Similarity=0.829  Sum_probs=103.3

Q ss_pred             HHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccC
Q 047550           93 VDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKR  172 (395)
Q Consensus        93 IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg  172 (395)
                      ||+.|+||++.||+.||.++|+|.+++|+||+|||++|+++|.+||.++|.+||+.||||++.||++||.++|+|.++++
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~   80 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT   80 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence            78999999999999999999999999999999999999999999998789999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550          173 AFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       173 ~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk  219 (395)
                      +||+|||++|+++|.+||++|+.||+.|||||+++|++||+.+++++
T Consensus        81 ~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           81 SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             CCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             cCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999998765

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=5.5e-33  Score=232.26  Aligned_cols=104  Identities=48%  Similarity=0.997  Sum_probs=99.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhh
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMI  196 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~I  196 (395)
                      +++|+||+|||++|+++|.+||.++|..||+.||||++.||++||.++|+|.+++++||+|||++|+++|.+||.+|+.|
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I   81 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI   81 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHH
Confidence            57899999999999999999998789999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHHHHHHH
Q 047550          197 ARLFPGRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       197 A~~l~gRT~~qcknRw~~ilkkk~  220 (395)
                      |+.|||||+++|++||+.++++++
T Consensus        82 a~~l~gRt~~~~k~rw~~~~~~~~  105 (105)
T 1gv2_A           82 AKLLPGRTDNAIKNHWNSTMRRKV  105 (105)
T ss_dssp             HTTCTTCCHHHHHHHHHHHTC---
T ss_pred             HHHcCCCCHHHHHHHHHHHHhccC
Confidence            999999999999999999997753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.98  E-value=9.3e-33  Score=232.30  Aligned_cols=104  Identities=30%  Similarity=0.646  Sum_probs=100.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhh
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIAR  198 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~  198 (395)
                      ||+||+|||++|+++|.+||..+|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHh
Q 047550          199 LFPGRTDNAVKNHWHVIMARKYRE  222 (395)
Q Consensus       199 ~l~gRT~~qcknRw~~ilkkk~~~  222 (395)
                      .|||||+++|++||+.++++..+.
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHh
Confidence            999999999999999999876544

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.97  E-value=9.2e-32  Score=232.53  Aligned_cols=105  Identities=37%  Similarity=0.751  Sum_probs=100.3

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCc
Q 047550          113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK  192 (395)
Q Consensus       113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~k  192 (395)
                      ..+..++|+||+|||++|+++|..||. +|..||+.|+||++.||++||.++|+|.+++++||+|||++|+++|.+||.+
T Consensus         5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            356778999999999999999999996 8999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          193 WAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       193 Ws~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                      |++||+.|+|||+++|++||+.++++
T Consensus        84 W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           84 WAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999998865

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.97  E-value=6.6e-32  Score=234.76  Aligned_cols=105  Identities=43%  Similarity=0.830  Sum_probs=101.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhh
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIAR  198 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~  198 (395)
                      ||+||+|||++|+++|..||.++|..||..||||++.||++||.++|+|.+++++||+|||++|+++|.+||++|+.||+
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~   81 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK   81 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHH
Confidence            79999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhh
Q 047550          199 LFPGRTDNAVKNHWHVIMARKYREQ  223 (395)
Q Consensus       199 ~l~gRT~~qcknRw~~ilkkk~~~~  223 (395)
                      .|+|||+++|++||+.++++++...
T Consensus        82 ~l~gRt~~~~k~rw~~~l~~~~~~~  106 (131)
T 3zqc_A           82 LIPGRTDNAIKNRWNSSISKRISTN  106 (131)
T ss_dssp             TSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999998766443

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.95  E-value=7.9e-29  Score=221.46  Aligned_cols=105  Identities=30%  Similarity=0.706  Sum_probs=62.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCC-chhh
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGN-KWAM  195 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~-kWs~  195 (395)
                      +.+++||+|||++|+++|.+||..+|..||+.||||++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~   83 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV   83 (159)
T ss_dssp             ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence            578999999999999999999988999999999999999999999999999999999999999999999999996 6999


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550          196 IARLFPGRTDNAVKNHWHVIMARKYR  221 (395)
Q Consensus       196 IA~~l~gRT~~qcknRw~~ilkkk~~  221 (395)
                      ||..|+|||+.||++||..+|.+.++
T Consensus        84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~  109 (159)
T 1h89_C           84 IAKHLKGRIGKQCRERWHNHLNPEVK  109 (159)
T ss_dssp             HHHTSTTCCHHHHHHHHHHTTCTTSC
T ss_pred             HHHHcCCCCHHHHHHHHHHHhCcccc
Confidence            99999999999999999998865443

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.93  E-value=3e-27  Score=205.39  Aligned_cols=125  Identities=16%  Similarity=0.297  Sum_probs=103.9

Q ss_pred             CCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc
Q 047550           71 CDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE  150 (395)
Q Consensus        71 ~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp  150 (395)
                      +++||+.|..+|..++..+|..||..|++|++.||+.||.++|+|.+++|+||+|||++|+++|.+|| .+|..||+.||
T Consensus         6 t~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~   84 (131)
T 3zqc_A            6 TEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP   84 (131)
T ss_dssp             CHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST
T ss_pred             CHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999 66999999999


Q ss_pred             CCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcC
Q 047550          151 GRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLF  200 (395)
Q Consensus       151 gRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l  200 (395)
                      |||+.||++||.++|++.+..++|+.+-    +......+.+|+.|++.|
T Consensus        85 gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A           85 GRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKAADVPKKL  130 (131)
T ss_dssp             TCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC------------
T ss_pred             CCCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhhhhhhhhhcchhc
Confidence            9999999999999999999999988762    111122245688888765

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.91  E-value=7.7e-25  Score=182.82  Aligned_cols=101  Identities=15%  Similarity=0.274  Sum_probs=93.6

Q ss_pred             CCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHH
Q 047550           66 QNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLI  145 (395)
Q Consensus        66 k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kI  145 (395)
                      ++-| +++||..|..+|..+|..+|..||..|++|+..||+.||.++++|.+++|+||+|||++|+++|.+|| .+|..|
T Consensus         4 k~~W-T~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~I   81 (105)
T 1gv2_A            4 KGPW-TKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEI   81 (105)
T ss_dssp             CSCC-CHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHH
T ss_pred             CCCC-CHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC-CCHHHH
Confidence            3444 48999999999999999999999999999999999999999999999999999999999999999999 579999


Q ss_pred             HHHccCCChhhhhhhhhhccccc
Q 047550          146 AEKLEGRSGKSCRLRWFNQLDPR  168 (395)
Q Consensus       146 Ak~lpgRt~~QCr~RW~~~L~p~  168 (395)
                      |+.|||||+.||++||..+++..
T Consensus        82 a~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           82 AKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHcCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999988653

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.91  E-value=6.5e-25  Score=184.40  Aligned_cols=98  Identities=20%  Similarity=0.344  Sum_probs=93.0

Q ss_pred             cCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc
Q 047550           70 YCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL  149 (395)
Q Consensus        70 ~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l  149 (395)
                      ++++||+.|..+|..+|..+|..||..|++|++.||+.||.++|+|.+++|+||+|||++|+++|.+|| .+|..||+.|
T Consensus         4 Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l   82 (107)
T 2k9n_A            4 FTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFL   82 (107)
T ss_dssp             SCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHC
Confidence            348899999999999999999999999999999999999999999999999999999999999999999 5799999999


Q ss_pred             cCCChhhhhhhhhhccccc
Q 047550          150 EGRSGKSCRLRWFNQLDPR  168 (395)
Q Consensus       150 pgRt~~QCr~RW~~~L~p~  168 (395)
                      ||||+.||++||..+++..
T Consensus        83 ~gRt~~~~k~rw~~l~r~~  101 (107)
T 2k9n_A           83 KNRSDNNIRNRWMMIARHR  101 (107)
T ss_dssp             SSSCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhH
Confidence            9999999999999887653

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.89  E-value=1.3e-23  Score=181.45  Aligned_cols=102  Identities=14%  Similarity=0.273  Sum_probs=94.9

Q ss_pred             cCCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHH
Q 047550           65 SQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNL  144 (395)
Q Consensus        65 ~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~k  144 (395)
                      .++-| +++||+.|.++|..+|..+|.+||..|+||+..||+.||.++++|.+++|+||+|||++|+++|.+|| .+|..
T Consensus        26 ~k~~W-t~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G-~~W~~  103 (128)
T 1h8a_C           26 NKGPW-TKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAE  103 (128)
T ss_dssp             CCSCC-CHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHC-SCHHH
T ss_pred             CCCCC-CHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHC-cCHHH
Confidence            34444 48999999999999999999999999999999999999999999999999999999999999999999 57999


Q ss_pred             HHHHccCCChhhhhhhhhhccccc
Q 047550          145 IAEKLEGRSGKSCRLRWFNQLDPR  168 (395)
Q Consensus       145 IAk~lpgRt~~QCr~RW~~~L~p~  168 (395)
                      ||+.|||||+.+|++||..+++..
T Consensus       104 Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C          104 IAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999988653

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.89  E-value=5.7e-24  Score=183.65  Aligned_cols=99  Identities=18%  Similarity=0.301  Sum_probs=92.7

Q ss_pred             cCCcccCCCcchhHHHHHhcCCCCChHHHHhhcCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHH
Q 047550           65 SQNICYCDSSDHQKSDLAAGGDSDNNNKVDESVDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNL  144 (395)
Q Consensus        65 ~k~i~~~~~eD~~L~~lv~~~~~~dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~k  144 (395)
                      .++-| +++||+.|..+|..+|. +|.+||+.|++|+..||+.||.++|+|.+++|+||+|||++|+++|.+|| .+|.+
T Consensus        10 kk~~W-T~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~   86 (126)
T 3osg_A           10 KKQKF-TPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG-RQWAI   86 (126)
T ss_dssp             SSCCC-CHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC-SCHHH
T ss_pred             CCCCC-CHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC-cCHHH
Confidence            34444 48999999999999997 99999999999999999999999999999999999999999999999999 67999


Q ss_pred             HHHHccCCChhhhhhhhhhccc
Q 047550          145 IAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       145 IAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      ||+.|||||+.+|++||..+++
T Consensus        87 Ia~~l~gRt~~~~k~rw~~l~~  108 (126)
T 3osg_A           87 IAKFFPGRTDIHIKNRWVTISN  108 (126)
T ss_dssp             HHTTSTTCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998764

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.82  E-value=4.4e-21  Score=149.64  Aligned_cols=66  Identities=38%  Similarity=0.714  Sum_probs=63.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHH
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEE  179 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED  179 (395)
                      .+.+++|+||+|||++|+++|.+||..+|..||..|+|||+.||++||.++|+|.+++++||+|||
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            567899999999999999999999988999999999999999999999999999999999999998

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.77  E-value=7.4e-19  Score=165.86  Aligned_cols=105  Identities=21%  Similarity=0.308  Sum_probs=92.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC-----hHHHHHHHccCCChhhhhhhhhhccccccc-------------------
Q 047550          115 KVCSRGHWRPAEDSKLKELVALYGPQ-----NWNLIAEKLEGRSGKSCRLRWFNQLDPRIN-------------------  170 (395)
Q Consensus       115 p~~~kg~WT~EED~~L~~lV~~yG~~-----nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~-------------------  170 (395)
                      +..++++||+|||++|+++|.++|..     .|.+||+.|||||+.|||+||+.+|.+.++                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            45678999999999999999999854     399999999999999999999999999987                   


Q ss_pred             ----------cCCCCHHHHHHHHHHHHH-c--------------------------------CC----------------
Q 047550          171 ----------KRAFSEDEEERLMAAHRV-Y--------------------------------GN----------------  191 (395)
Q Consensus       171 ----------kg~WT~EED~~Ll~lv~~-~--------------------------------G~----------------  191 (395)
                                +..||.|||..|+..+++ +                                |.                
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      789999999999999887 1                                11                


Q ss_pred             ---------chhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550          192 ---------KWAMIARLFPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       192 ---------kWs~IA~~l~gRT~~qcknRw~~ilkkk  219 (395)
                               .|.+||+.+|+||.++.|+||+.+++..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                     5999999999999999999999999765

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.70  E-value=8.9e-18  Score=144.39  Aligned_cols=84  Identities=21%  Similarity=0.327  Sum_probs=78.9

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc----cCCChhhhhhhhhhccc-----cccccC-CCCHHHHHH
Q 047550          112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL----EGRSGKSCRLRWFNQLD-----PRINKR-AFSEDEEER  181 (395)
Q Consensus       112 ~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l----pgRt~~QCr~RW~~~L~-----p~l~kg-~WT~EED~~  181 (395)
                      .+.+..++++||+|||+.|+++|++||.++|..|++.+    +|||+.+|++||+++++     |.++++ +|++||+.+
T Consensus        10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r   89 (121)
T 2juh_A           10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence            35677899999999999999999999988999999995    89999999999999998     899999 999999999


Q ss_pred             HHHHHHHcCCchhh
Q 047550          182 LMAAHRVYGNKWAM  195 (395)
Q Consensus       182 Ll~lv~~~G~kWs~  195 (395)
                      |++++..+|++|++
T Consensus        90 v~~~h~~~gn~~~~  103 (121)
T 2juh_A           90 VLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHccchhc
Confidence            99999999999987

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=5.3e-17  Score=122.74  Aligned_cols=57  Identities=28%  Similarity=0.693  Sum_probs=54.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccc
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRIN  170 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~  170 (395)
                      +|.+++++||+|||++|+++|.+||..+|.+||+.|+|||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            578899999999999999999999987899999999999999999999999999875

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.68  E-value=2.3e-17  Score=130.25  Aligned_cols=59  Identities=22%  Similarity=0.336  Sum_probs=47.4

Q ss_pred             hhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHH
Q 047550          157 CRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       157 Cr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~il  216 (395)
                      ..-||.++|+|.+++++||+|||++|+++|.+||++|++||+.| |||++|||+||+.+.
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 999999999998654

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.66  E-value=1.4e-16  Score=137.08  Aligned_cols=80  Identities=20%  Similarity=0.271  Sum_probs=73.5

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc----cCCChhhhhhhhhhcc-----ccccccCCCCHHH-HHHH
Q 047550          113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL----EGRSGKSCRLRWFNQL-----DPRINKRAFSEDE-EERL  182 (395)
Q Consensus       113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l----pgRt~~QCr~RW~~~L-----~p~l~kg~WT~EE-D~~L  182 (395)
                      .....++++||+|||+.|+++|++||.++|..|++.+    ++||+.+|++||++++     +|.++++.|+++| +.+|
T Consensus        25 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           25 FGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            3445678999999999999999999988999999975    8999999999999999     7999999999999 8999


Q ss_pred             HHHHHHcCCc
Q 047550          183 MAAHRVYGNK  192 (395)
Q Consensus       183 l~lv~~~G~k  192 (395)
                      ++++..+|++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999975

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.65  E-value=9.7e-17  Score=117.92  Aligned_cols=52  Identities=48%  Similarity=1.042  Sum_probs=49.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR  168 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~  168 (395)
                      +++|+||+|||++|+++|.+||.++|.+||+.|+|||+.||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999878999999999999999999999999984

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.65  E-value=1.6e-16  Score=123.49  Aligned_cols=64  Identities=22%  Similarity=0.332  Sum_probs=59.4

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc--CCChhhhhhhhhhccccccccCCCC
Q 047550          112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE--GRSGKSCRLRWFNQLDPRINKRAFS  175 (395)
Q Consensus       112 ~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp--gRt~~QCr~RW~~~L~p~l~kg~WT  175 (395)
                      ...+..++++||+|||++|+++|.+||.++|..||..|+  |||+.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            456778899999999999999999999889999999999  9999999999999999999988764

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.64  E-value=1.2e-16  Score=117.28  Aligned_cols=52  Identities=37%  Similarity=0.770  Sum_probs=48.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR  168 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~  168 (395)
                      +++|+||+|||++|+++|.+||.++|..||+.|+|||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4689999999999999999999778999999999999999999999999874

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=2.5e-16  Score=121.26  Aligned_cols=59  Identities=22%  Similarity=0.432  Sum_probs=55.9

Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHHHhh
Q 047550          164 QLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ  223 (395)
Q Consensus       164 ~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~~  223 (395)
                      +|+|.+++++||+|||++|+++|++||.+|.+||+ ++|||+.|||+||+.++++.++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence            68999999999999999999999999999999999 889999999999999998877654

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3.8e-16  Score=120.24  Aligned_cols=60  Identities=23%  Similarity=0.421  Sum_probs=56.1

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCC
Q 047550          112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRA  173 (395)
Q Consensus       112 ~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~  173 (395)
                      +|+|.+++++||+|||++|+++|..||. +|.+||+ ++|||+.||++||.++|++.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            6899999999999999999999999995 8999999 8899999999999999999887653

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.60  E-value=5.8e-16  Score=121.36  Aligned_cols=58  Identities=19%  Similarity=0.241  Sum_probs=54.4

Q ss_pred             cccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 047550          165 LDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYRE  222 (395)
Q Consensus       165 L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~~  222 (395)
                      ++|.+++++||+|||++|+++|.+||.+|..||+.|+|||++|||+||+.+++++.+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999999999999999999999999999999876544

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.60  E-value=6.8e-16  Score=118.77  Aligned_cols=55  Identities=24%  Similarity=0.444  Sum_probs=49.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc--CCChhhhhhhhhhccccccc
Q 047550          116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE--GRSGKSCRLRWFNQLDPRIN  170 (395)
Q Consensus       116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp--gRt~~QCr~RW~~~L~p~l~  170 (395)
                      ..++++||+|||++|+++|.+||.++|.+||+.++  |||+.||++||++++++.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            35789999999999999999999889999999976  99999999999999988764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.58  E-value=1.8e-15  Score=114.65  Aligned_cols=55  Identities=20%  Similarity=0.379  Sum_probs=51.5

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR  168 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~  168 (395)
                      ++.+.+++||+|||++|+++|.+||.++|.+||+.|+|||+.||++||.++|.+.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            5678999999999999999999999888999999999999999999999998754

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-15  Score=119.54  Aligned_cols=60  Identities=28%  Similarity=0.262  Sum_probs=46.1

Q ss_pred             hHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550          104 EDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus       104 qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      ...-||.++|+|.+++|+||+|||++|+++|.+||. +|.+||+.| |||+.||++||..+.
T Consensus         8 ~~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-gRt~~q~knRw~~L~   67 (73)
T 2llk_A            8 SSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-GRSASSVKDRCRLMK   67 (73)
T ss_dssp             -----------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred             ccCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            345689999999999999999999999999999995 499999999 999999999998543

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.57  E-value=1.4e-15  Score=114.88  Aligned_cols=53  Identities=28%  Similarity=0.618  Sum_probs=49.6

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          166 DPRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       166 ~p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                      +|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+.+|++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p   56 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG   56 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence            4678999999999999999999999 6999999999999999999999988754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.56  E-value=2.7e-15  Score=110.10  Aligned_cols=49  Identities=27%  Similarity=0.645  Sum_probs=45.4

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+.+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   50 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999997 89999999999999999999999885

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.56  E-value=3e-15  Score=110.50  Aligned_cols=49  Identities=29%  Similarity=0.468  Sum_probs=46.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc--CCChhhhhhhhhhccc
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE--GRSGKSCRLRWFNQLD  166 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp--gRt~~QCr~RW~~~L~  166 (395)
                      ++|+||+|||++|+++|.+||.++|..||..|+  |||+.||++||.++++
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            478999999999999999999889999999999  9999999999999875

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.55  E-value=3.4e-15  Score=110.20  Aligned_cols=49  Identities=24%  Similarity=0.538  Sum_probs=46.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCC--CCCHHHHHHHHHHHHHH
Q 047550          170 NKRAFSEDEEERLMAAHRVYG-NKWAMIARLFP--GRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       170 ~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~--gRT~~qcknRw~~ilkk  218 (395)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||..+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999999864

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.53  E-value=5.2e-15  Score=108.63  Aligned_cols=49  Identities=27%  Similarity=0.698  Sum_probs=46.0

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.|||+||..+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   50 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            47899999999999999999996 69999999999999999999998874

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.53  E-value=8.7e-15  Score=110.22  Aligned_cols=52  Identities=21%  Similarity=0.411  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-CCChhhhhhhhhhcc
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQL  165 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-gRt~~QCr~RW~~~L  165 (395)
                      +..+.+++||+|||++|+++|.+||.++|.+||+.|+ |||+.||++||.+++
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4456789999999999999999999889999999999 999999999999865

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=7.3e-15  Score=115.66  Aligned_cols=60  Identities=23%  Similarity=0.370  Sum_probs=55.4

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCC-----ChHHHHHHHccCCChhhhhhhhhhccccccccCC
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYGP-----QNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRA  173 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG~-----~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~  173 (395)
                      +|.+.+++||+|||++|+++|.+||.     .+|.+||+.|+|||+.||++||.++|.+.++.|.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            57889999999999999999999996     7899999999999999999999999988777664

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.53  E-value=6.8e-15  Score=115.21  Aligned_cols=58  Identities=12%  Similarity=0.200  Sum_probs=54.1

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccccccc
Q 047550          113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINK  171 (395)
Q Consensus       113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~k  171 (395)
                      .+|.+++++||+|||++|+++|.+||. +|..||+.|||||+.||++||.++|++.++.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            578899999999999999999999995 8999999999999999999999999877665

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.52  E-value=6.8e-15  Score=114.26  Aligned_cols=57  Identities=23%  Similarity=0.435  Sum_probs=52.1

Q ss_pred             cccccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCC--CCCHHHHHHHHHHHHHHHHH
Q 047550          165 LDPRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFP--GRTDNAVKNHWHVIMARKYR  221 (395)
Q Consensus       165 L~p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~--gRT~~qcknRw~~ilkkk~~  221 (395)
                      ..+..++++||+|||++|+++|.+|| ++|..||..|+  |||+.|||+||+.+|++.+.
T Consensus         4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~   63 (69)
T 1ity_A            4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLI   63 (69)
T ss_dssp             TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCC
Confidence            45677899999999999999999999 69999999999  99999999999999986553

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.52  E-value=9.8e-15  Score=110.54  Aligned_cols=51  Identities=18%  Similarity=0.317  Sum_probs=48.0

Q ss_pred             cccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          167 PRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       167 p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      +.+.+++||+|||++|+++|.+|| ++|.+||+.|+|||+.|||+||..++.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            568899999999999999999999 799999999999999999999998763

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=1.4e-14  Score=111.37  Aligned_cols=52  Identities=27%  Similarity=0.574  Sum_probs=46.2

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCC--CCCHHHHHHHHHHHHHHH
Q 047550          168 RINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFP--GRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       168 ~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~--gRT~~qcknRw~~ilkkk  219 (395)
                      ..++++||+|||++|+++|.+|| ++|..||+.++  |||+.|||+||++++|..
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            35789999999999999999999 58999999865  999999999999998754

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=6.8e-15  Score=114.47  Aligned_cols=56  Identities=25%  Similarity=0.429  Sum_probs=51.3

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 047550          166 DPRINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMARKYR  221 (395)
Q Consensus       166 ~p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilkkk~~  221 (395)
                      .+.+++++||+|||++|+++|.+|| ++|..||..|+|||+.|||+||+.+|++.++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~   60 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK   60 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence            4678999999999999999999999 7999999999999999999999998865443

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.46  E-value=5.4e-14  Score=105.87  Aligned_cols=49  Identities=27%  Similarity=0.390  Sum_probs=45.6

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCC-CCCHHHHHHHHHHHH
Q 047550          168 RINKRAFSEDEEERLMAAHRVYG-NKWAMIARLFP-GRTDNAVKNHWHVIM  216 (395)
Q Consensus       168 ~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~-gRT~~qcknRw~~il  216 (395)
                      .+.+++||+|||++|+++|.+|| ++|.+||+.|+ |||+.|||+||..++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            46688999999999999999999 89999999999 999999999998753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=2.1e-14  Score=113.03  Aligned_cols=55  Identities=16%  Similarity=0.258  Sum_probs=50.4

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHcC------CchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550          166 DPRINKRAFSEDEEERLMAAHRVYG------NKWAMIARLFPGRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       166 ~p~l~kg~WT~EED~~Ll~lv~~~G------~kWs~IA~~l~gRT~~qcknRw~~ilkkk~  220 (395)
                      +|.+++++||+|||++|+++|.+||      .+|.+||..|+|||+.||++||+++|++..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~   63 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLT   63 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999      689999999999999999999988886533

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.43  E-value=2.8e-13  Score=109.35  Aligned_cols=69  Identities=22%  Similarity=0.353  Sum_probs=60.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHHH----ccCCChhhhhhhhhhcc-----ccccccC-CCCHHHHHHHHHHHHH
Q 047550          120 GHWRPAEDSKLKELVALYGPQNWNLIAEK----LEGRSGKSCRLRWFNQL-----DPRINKR-AFSEDEEERLMAAHRV  188 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~----lpgRt~~QCr~RW~~~L-----~p~l~kg-~WT~EED~~Ll~lv~~  188 (395)
                      ++||+|||+.|+++|++||.++|.+|++.    |+|||+.+|++||++++     +|.++++ +..++...+++.+...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            48999999999999999998899999996    89999999999999987     5766665 6777777888888754

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.14  E-value=1.3e-14  Score=118.32  Aligned_cols=57  Identities=19%  Similarity=0.269  Sum_probs=53.2

Q ss_pred             ccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550          164 QLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       164 ~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~  220 (395)
                      .+.|.+++++||+|||++|+++|.+||.+|..||..|+|||++||++||+.++++.-
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            467889999999999999999999999999999999999999999999999987643

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.36  E-value=5.7e-13  Score=111.95  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=65.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc----cCCChhhhhhhhhhcc-----ccccccCCCCHHHHHH-H
Q 047550          113 LSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL----EGRSGKSCRLRWFNQL-----DPRINKRAFSEDEEER-L  182 (395)
Q Consensus       113 l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l----pgRt~~QCr~RW~~~L-----~p~l~kg~WT~EED~~-L  182 (395)
                      ..+..++++||+|||+.|+++|++||.++|..|++.+    ++||+.+|++||++++     +|.++++.-+++|-.. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            3456788999999999999999999988999999965    8999999999999988     6889999888776554 6


Q ss_pred             HHHHHHcC
Q 047550          183 MAAHRVYG  190 (395)
Q Consensus       183 l~lv~~~G  190 (395)
                      +++...+|
T Consensus        87 ~~~~~~~~   94 (105)
T 2aje_A           87 LNAHGYWT   94 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66666544

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.35  E-value=8.2e-13  Score=104.16  Aligned_cols=51  Identities=18%  Similarity=0.451  Sum_probs=47.0

Q ss_pred             cccccCCCCHHHHHHHHHHHHHcC----CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          167 PRINKRAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       167 p~l~kg~WT~EED~~Ll~lv~~~G----~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      +...+++||+|||++|++++.+||    .+|.+||.+|||||..||++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            356788999999999999999999    689999999999999999999998873

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.31  E-value=1e-12  Score=105.02  Aligned_cols=48  Identities=21%  Similarity=0.387  Sum_probs=44.7

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550          168 RINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       168 ~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i  215 (395)
                      ...+++||+|||++|+++|.+||++|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.30  E-value=2.2e-12  Score=103.09  Aligned_cols=49  Identities=22%  Similarity=0.542  Sum_probs=46.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc
Q 047550          115 KVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ  164 (395)
Q Consensus       115 p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~  164 (395)
                      ....+++||+|||++|+++|.+|| .+|.+||++|++||+.||++||.++
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            345678999999999999999999 8899999999999999999999988

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.95  E-value=2.9e-13  Score=110.37  Aligned_cols=55  Identities=20%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcccc
Q 047550          112 GLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP  167 (395)
Q Consensus       112 ~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p  167 (395)
                      ...|.+.+|+||+|||++|+++|..||. +|..||..|+|||+.||++||.++|..
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            4678899999999999999999999995 799999999999999999999998864

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.26  E-value=2.4e-12  Score=101.52  Aligned_cols=53  Identities=17%  Similarity=0.345  Sum_probs=48.0

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhC---CChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYG---PQNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG---~~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      .+...+++||+|||.+|++++..||   ..+|.+||+.|||||..||++||.+++.
T Consensus        13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4566889999999999999999999   3579999999999999999999998764

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.25  E-value=6.8e-12  Score=95.63  Aligned_cols=50  Identities=20%  Similarity=0.480  Sum_probs=46.2

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCchhhhh---hcCCCCCHHHHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYGNKWAMIA---RLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~kWs~IA---~~l~gRT~~qcknRw~~ilkk  218 (395)
                      .++.+||+|||+.|+++|++||.+|..|+   ..+++||..++++||+.|+|+
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            46889999999999999999999999999   577999999999999999863

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.25  E-value=7.2e-12  Score=101.08  Aligned_cols=49  Identities=27%  Similarity=0.419  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHHcCC-chhhhhhc----CCCCCHHHHHHHHHHHHHHHH
Q 047550          172 RAFSEDEEERLMAAHRVYGN-KWAMIARL----FPGRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G~-kWs~IA~~----l~gRT~~qcknRw~~ilkkk~  220 (395)
                      ++||+|||+.|+++|.+||. +|+.|++.    |+|||+++||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            47999999999999999996 99999996    899999999999999997543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.24  E-value=5.6e-12  Score=119.13  Aligned_cols=97  Identities=18%  Similarity=0.178  Sum_probs=86.6

Q ss_pred             cCCCcchhHHHHHhcCCCC-----ChHHHHhhcCCCCchhHHHHhhcCCCCCCC--------------------------
Q 047550           70 YCDSSDHQKSDLAAGGDSD-----NNNKVDESVDGYEDMEDVKKMDGGLSKVCS--------------------------  118 (395)
Q Consensus        70 ~~~~eD~~L~~lv~~~~~~-----dW~~IA~~lpgRt~~qcr~Rw~~~l~p~~~--------------------------  118 (395)
                      |+++||+.|.++|.+++..     .|.+||..|+||+..+|+.||..+|.+.+.                          
T Consensus        11 FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~lp   90 (246)
T 1ign_A           11 FTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVLP   90 (246)
T ss_dssp             CCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESSCC
T ss_pred             CCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeeccC
Confidence            4589999999999999764     499999999999999999999999999986                          


Q ss_pred             ---CCCCCHHHHHHHHHHHHH-h--------------------------------CC-----------------------
Q 047550          119 ---RGHWRPAEDSKLKELVAL-Y--------------------------------GP-----------------------  139 (395)
Q Consensus       119 ---kg~WT~EED~~L~~lV~~-y--------------------------------G~-----------------------  139 (395)
                         +.+||.|||-.|...+.+ +                                ++                       
T Consensus        91 ~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~  170 (246)
T 1ign_A           91 PSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIA  170 (246)
T ss_dssp             CCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCC
T ss_pred             ccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcch
Confidence               899999999999999987 1                                11                       


Q ss_pred             -ChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          140 -QNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       140 -~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                       ..|.+||+.+|+||..+.|+||...|.
T Consensus       171 ~~~fk~ia~~~P~HT~~SWRdRyrKfl~  198 (246)
T 1ign_A          171 REFFKHFAEEHAAHTENAWRDRFRKFLL  198 (246)
T ss_dssp             TTHHHHHHHHTTTSCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHCCCCChhhHHHHHHHHHh
Confidence             159999999999999999999998774

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.20  E-value=1.9e-11  Score=102.72  Aligned_cols=52  Identities=27%  Similarity=0.425  Sum_probs=47.6

Q ss_pred             cccccCCCCHHHHHHHHHHHHHcCC-chhhhhhcC----CCCCHHHHHHHHHHHHHH
Q 047550          167 PRINKRAFSEDEEERLMAAHRVYGN-KWAMIARLF----PGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       167 p~l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l----~gRT~~qcknRw~~ilkk  218 (395)
                      ...++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++.
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            4578899999999999999999996 999999965    899999999999999964

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.18  E-value=1.6e-11  Score=105.45  Aligned_cols=55  Identities=27%  Similarity=0.425  Sum_probs=49.9

Q ss_pred             cccccccCCCCHHHHHHHHHHHHHcCC-chhhhhhc----CCCCCHHHHHHHHHHHHHHH
Q 047550          165 LDPRINKRAFSEDEEERLMAAHRVYGN-KWAMIARL----FPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       165 L~p~l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----l~gRT~~qcknRw~~ilkkk  219 (395)
                      +.+..++++||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~   70 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA   70 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence            456778999999999999999999996 99999997    48999999999999999753

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.17  E-value=3.7e-11  Score=98.85  Aligned_cols=50  Identities=32%  Similarity=0.612  Sum_probs=45.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHcC----CchhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550          170 NKRAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       170 ~kg~WT~EED~~Ll~lv~~~G----~kWs~IA~~l~gRT~~qcknRw~~ilkkk  219 (395)
                      .+++||+|||++|++++.+||    .+|.+||..|||||.++|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    67999999999999999999999988654

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.13  E-value=5.6e-11  Score=102.24  Aligned_cols=53  Identities=25%  Similarity=0.401  Sum_probs=47.6

Q ss_pred             cccccCCCCHHHHHHHHHHHHHcCC-chhhhhhc----CCCCCHHHHHHHHHHHHHHH
Q 047550          167 PRINKRAFSEDEEERLMAAHRVYGN-KWAMIARL----FPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       167 p~l~kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~----l~gRT~~qcknRw~~ilkkk  219 (395)
                      ...++++||+|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~   84 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA   84 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            3457889999999999999999995 99999986    48999999999999999754

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.04  E-value=1.4e-10  Score=95.39  Aligned_cols=49  Identities=22%  Similarity=0.510  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CChHHHHHHHccCCChhhhhhhhhhcc
Q 047550          117 CSRGHWRPAEDSKLKELVALYG---PQNWNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG---~~nW~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      ..+++||+|||++|++++..||   ..+|.+||+.|||||..+|++||..++
T Consensus         6 ~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            6 GSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             --CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3568999999999999999997   467999999999999999999998875

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.92  E-value=8.7e-10  Score=84.02  Aligned_cols=50  Identities=20%  Similarity=0.246  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHH---HccCCChhhhhhhhhhccc
Q 047550          116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAE---KLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk---~lpgRt~~QCr~RW~~~L~  166 (395)
                      ..++.+||+|||+.|+++|++||. +|..|+.   ++++||...+++||+++.+
T Consensus         5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            347889999999999999999995 8999995   6689999999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.90  E-value=2.7e-09  Score=87.68  Aligned_cols=65  Identities=15%  Similarity=0.238  Sum_probs=58.4

Q ss_pred             hhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcC-----CCCCHHHHHHHHHHHHHHHHHhh
Q 047550          155 KSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLF-----PGRTDNAVKNHWHVIMARKYREQ  223 (395)
Q Consensus       155 ~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l-----~gRT~~qcknRw~~ilkkk~~~~  223 (395)
                      .=+.++|.++|.+    .+||.||+..|++++++||.+|..|+..+     ++||..++|+||..+.++.+...
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            4577899999875    89999999999999999999999999998     58999999999999998766554

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=2.4e-09  Score=81.15  Aligned_cols=47  Identities=9%  Similarity=0.086  Sum_probs=43.2

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i  215 (395)
                      ...++||+||++++++++.+||.+|..||..||+||..+|..+|...
T Consensus        10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            34579999999999999999999999999999999999999999654

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=8.3e-09  Score=78.19  Aligned_cols=49  Identities=24%  Similarity=0.312  Sum_probs=44.0

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550          116 VCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus       116 ~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      ....++||+||++++++++..|| ++|..||..||+||..||..+|....
T Consensus         9 r~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            9 RQFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CSCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            34568999999999999999999 78999999999999999999997543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.78  E-value=7.1e-09  Score=81.37  Aligned_cols=50  Identities=16%  Similarity=0.306  Sum_probs=44.6

Q ss_pred             ccccCCCCHHHHHHHHHHHHHcC----CchhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          168 RINKRAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       168 ~l~kg~WT~EED~~Ll~lv~~~G----~kWs~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                      ..+.+.||.|||++|.+++.+|+    .+|.+||..+ |||..+|++||+.+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34577999999999999999997    5799999998 99999999999888643

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.74  E-value=9e-09  Score=96.56  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=61.1

Q ss_pred             HHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHH
Q 047550          129 KLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAV  208 (395)
Q Consensus       129 ~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qc  208 (395)
                      .|..|-.+.  .+|+++-..|..+....+. +++..-........||+||++++++++.+||.+|..||+.|++||..||
T Consensus        94 ei~sLkrqI--q~~kQ~~~~L~~~~~~~Ie-~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~Qc  170 (235)
T 2iw5_B           94 ELVSVKRQI--QNIKQTNSALKEKLDGGIE-PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQV  170 (235)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHHSTTTTG-GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHhhcc-cccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHH
Confidence            344444432  3577777666444433322 3333212223457899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 047550          209 KNHWHVIMA  217 (395)
Q Consensus       209 knRw~~ilk  217 (395)
                      |++|+...+
T Consensus       171 KnfY~~~kK  179 (235)
T 2iw5_B          171 KNFFVNYRR  179 (235)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHHHH
Confidence            999986664

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.65  E-value=2.5e-08  Score=78.25  Aligned_cols=50  Identities=24%  Similarity=0.387  Sum_probs=44.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC---CChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          116 VCSRGHWRPAEDSKLKELVALYG---PQNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       116 ~~~kg~WT~EED~~L~~lV~~yG---~~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      ....+.||.|||++|.+++.+|+   ...|.+||..| |||..+|+.||..+.+
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45678999999999999999997   35799999998 9999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.51  E-value=4.3e-08  Score=101.13  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=41.3

Q ss_pred             CCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550          172 RAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i  215 (395)
                      ..||+||-+++++++.+||.+|..||+.+++||..|||++|...
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999643

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.47  E-value=9.4e-08  Score=75.20  Aligned_cols=46  Identities=15%  Similarity=0.271  Sum_probs=42.3

Q ss_pred             cCCCCHHHHHHHHHHHHHcCC----chhhhhhcCCCCCHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGN----KWAMIARLFPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~l~gRT~~qcknRw~~il  216 (395)
                      ...||.||+++|.+++..|+.    +|.+||..++|||..+|+.||..++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            468999999999999999983    6999999999999999999998774

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.44  E-value=4e-07  Score=71.63  Aligned_cols=50  Identities=20%  Similarity=0.352  Sum_probs=44.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC---ChHHHHHHHccCCChhhhhhhhhhcccc
Q 047550          118 SRGHWRPAEDSKLKELVALYGP---QNWNLIAEKLEGRSGKSCRLRWFNQLDP  167 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~---~nW~kIAk~lpgRt~~QCr~RW~~~L~p  167 (395)
                      ....||.+|+.+|.+++..|+.   .+|.+||..|||||..+|+.||..+++.
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            4568999999999999999974   4799999999999999999999987653

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.40  E-value=3.6e-07  Score=85.80  Aligned_cols=49  Identities=14%  Similarity=0.278  Sum_probs=45.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      ...++||+||++++++++.+|| ++|..||+.|++||..||+++|.++.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999 789999999999999999999987764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.38  E-value=2.8e-07  Score=69.52  Aligned_cols=48  Identities=23%  Similarity=0.342  Sum_probs=43.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCChHHHHHH-HccCCChhhhhhhhhhccc
Q 047550          119 RGHWRPAEDSKLKELVALY--------GPQNWNLIAE-KLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~y--------G~~nW~kIAk-~lpgRt~~QCr~RW~~~L~  166 (395)
                      |.+||+|||+.|+++|.+|        |..-|.++++ .+|++|-.+||+||.+.|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        5556999999 7999999999999998774

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.30  E-value=5.2e-07  Score=68.07  Aligned_cols=46  Identities=13%  Similarity=0.384  Sum_probs=41.4

Q ss_pred             cCCCCHHHHHHHHHHHHHc--------CCc-hhhhhh-cCCCCCHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVY--------GNK-WAMIAR-LFPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~--------G~k-Ws~IA~-~l~gRT~~qcknRw~~il  216 (395)
                      +.+||+|||..|++.|.+|        |++ |.++++ .++++|-.+||+||.+.|
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l   57 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL   57 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence            5689999999999999999        443 999999 899999999999998765

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.21  E-value=4.9e-06  Score=81.54  Aligned_cols=104  Identities=15%  Similarity=0.222  Sum_probs=83.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhh----hc--c----------------------------
Q 047550          120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWF----NQ--L----------------------------  165 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~----~~--L----------------------------  165 (395)
                      +.||..+...++.++.+||..+|..||..|+|+|...++..+.    ++  +                            
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999889999999999999988865221    11  0                            


Q ss_pred             -------c---------cccccCCCCHHHHHHHHHHHHHcCC----chhhhhh------------cCCCCCHHHHHHHHH
Q 047550          166 -------D---------PRINKRAFSEDEEERLMAAHRVYGN----KWAMIAR------------LFPGRTDNAVKNHWH  213 (395)
Q Consensus       166 -------~---------p~l~kg~WT~EED~~Ll~lv~~~G~----kWs~IA~------------~l~gRT~~qcknRw~  213 (395)
                             +         +..+...||+|||..||-++.+||-    .|..|-.            .+..||+.+|..|..
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                   0         1123457999999999999999994    5999962            457799999999999


Q ss_pred             HHHHHHHHhh
Q 047550          214 VIMARKYREQ  223 (395)
Q Consensus       214 ~ilkkk~~~~  223 (395)
                      .|++-..+..
T Consensus       271 tLi~~iekE~  280 (304)
T 1ofc_X          271 TLITLIEREN  280 (304)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9997654443

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.17  E-value=9.1e-07  Score=72.62  Aligned_cols=59  Identities=17%  Similarity=0.278  Sum_probs=51.9

Q ss_pred             hHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHc-----cCCChhhhhhhhhhcccc
Q 047550          104 EDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEKL-----EGRSGKSCRLRWFNQLDP  167 (395)
Q Consensus       104 qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l-----pgRt~~QCr~RW~~~L~p  167 (395)
                      -+..+|..+|.+    +.||.||+..|++|+++|+ .+|..|+..+     ++||..++++||..+.+.
T Consensus        19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~   82 (93)
T 3hm5_A           19 YSEQEYQLYLHD----DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK   82 (93)
T ss_dssp             CCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence            467888888876    8999999999999999999 5699999999     489999999999876543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.16  E-value=2.3e-06  Score=69.62  Aligned_cols=47  Identities=11%  Similarity=0.285  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHHHHHcCC---chhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550          173 AFSEDEEERLMAAHRVYGN---KWAMIARLFPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       173 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~l~gRT~~qcknRw~~ilkkk  219 (395)
                      .||.|||..||..+++-|.   .|..||+.|.+|+++||++||+.|++-.
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf   84 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence            6999999999999999996   6999999999999999999999999643

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.23  E-value=9e-07  Score=68.33  Aligned_cols=45  Identities=13%  Similarity=0.346  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHHHHHHHcCC---chhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          173 AFSEDEEERLMAAHRVYGN---KWAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       173 ~WT~EED~~Ll~lv~~~G~---kWs~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                      .||.|||..||..+++-|.   .|..||+.| +|+++||.+||+.+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            5999999999999999997   699999999 99999999999999853

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.97  E-value=1.9e-06  Score=67.59  Aligned_cols=43  Identities=26%  Similarity=0.449  Sum_probs=38.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCC----chhhhhhcCCCCCHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGN----KWAMIARLFPGRTDNAVKNHWH  213 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~l~gRT~~qcknRw~  213 (395)
                      ...||.||+++|.+++..|+.    +|.+||..|||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            457999999999999999984    6999999999999999999884

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.95  E-value=2.1e-05  Score=64.45  Aligned_cols=52  Identities=17%  Similarity=0.321  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHHHHHHcCCchhhhhhcCC-----CCCHHHHHHHHHHHHHHHHHhh
Q 047550          172 RAFSEDEEERLMAAHRVYGNKWAMIARLFP-----GRTDNAVKNHWHVIMARKYREQ  223 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~l~-----gRT~~qcknRw~~ilkkk~~~~  223 (395)
                      ..||.||...|++++++|+.+|..|+..+.     +||-.++|.||..+.++.++..
T Consensus        31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            689999999999999999999999998763     7999999999999998766554

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.88  E-value=2.3e-05  Score=59.61  Aligned_cols=47  Identities=21%  Similarity=0.455  Sum_probs=43.2

Q ss_pred             cccccCCCCHHHHHHHHHHHHHcCCchhhhhh-cCCCCCHHHHHHHHH
Q 047550          167 PRINKRAFSEDEEERLMAAHRVYGNKWAMIAR-LFPGRTDNAVKNHWH  213 (395)
Q Consensus       167 p~l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~-~l~gRT~~qcknRw~  213 (395)
                      |.+....||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   52 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYY   52 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence            56777899999999999999999999999999 599999999988775

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=3e-05  Score=58.98  Aligned_cols=49  Identities=14%  Similarity=0.241  Sum_probs=43.6

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCChHHHHHHH-ccCCChhhhhhhhhh
Q 047550          114 SKVCSRGHWRPAEDSKLKELVALYGPQNWNLIAEK-LEGRSGKSCRLRWFN  163 (395)
Q Consensus       114 ~p~~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~-lpgRt~~QCr~RW~~  163 (395)
                      .|.+....||+||-++..+.+.+|| ++|..|++. |++|+..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            4566778999999999999999999 789999995 899999999988754

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.66  E-value=5.5e-06  Score=64.97  Aligned_cols=45  Identities=16%  Similarity=0.410  Sum_probs=39.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---hHHHHHHHccCCChhhhhhhhh
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQ---NWNLIAEKLEGRSGKSCRLRWF  162 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~---nW~kIAk~lpgRt~~QCr~RW~  162 (395)
                      ..+.||.||+++|..++..|+..   .|.+||..|||||..+|+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            34689999999999999999743   6999999999999999999984

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.44  E-value=0.00015  Score=75.03  Aligned_cols=47  Identities=15%  Similarity=0.312  Sum_probs=43.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      ...+||.||-+++++++.+|| ++|..||+.|++||..||+.+|.++.
T Consensus       379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            357999999999999999999 78999999999999999999997643

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.42  E-value=0.0012  Score=60.44  Aligned_cols=101  Identities=15%  Similarity=0.187  Sum_probs=72.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC--CChHHHHHHH--ccCCChhhhhhhhhhc-------cc--------------------
Q 047550          118 SRGHWRPAEDSKLKELVALYG--PQNWNLIAEK--LEGRSGKSCRLRWFNQ-------LD--------------------  166 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG--~~nW~kIAk~--lpgRt~~QCr~RW~~~-------L~--------------------  166 (395)
                      ....||..|-..|++++.+||  ...|..|+..  |.+++...++.-+...       ++                    
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~~~   85 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKGPT   85 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------CCE
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccchh
Confidence            456899999999999999999  4679999976  5788887665422111       00                    


Q ss_pred             --------------------------------------------cccccCCCCHHHHHHHHHHHHHcC-Cchhhhhh--c
Q 047550          167 --------------------------------------------PRINKRAFSEDEEERLMAAHRVYG-NKWAMIAR--L  199 (395)
Q Consensus       167 --------------------------------------------p~l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~--~  199 (395)
                                                                  +..-...||++||..||.++.+|| ++|..|-.  .
T Consensus        86 ~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~  165 (211)
T 4b4c_A           86 FRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPD  165 (211)
T ss_dssp             EEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSS
T ss_pred             hhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhChh
Confidence                                                        000012599999999999999999 89999964  2


Q ss_pred             --C----------CCCCHHHHHHHHHHHHHH
Q 047550          200 --F----------PGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       200 --l----------~gRT~~qcknRw~~ilkk  218 (395)
                        |          ..++...+..|-..||+-
T Consensus       166 l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          166 LSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             cCccccccccccccCCChHHHHHHHHHHHHH
Confidence              1          124566799998888853

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.39  E-value=0.00024  Score=55.09  Aligned_cols=43  Identities=16%  Similarity=0.271  Sum_probs=40.3

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCchhhhhh-cCCCCCHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGNKWAMIAR-LFPGRTDNAVKNHWH  213 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~-~l~gRT~~qcknRw~  213 (395)
                      ...||+||-++..+++.+||.+|..|++ .|++||..+|...|.
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence            4689999999999999999999999999 599999999998886

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.37  E-value=0.00024  Score=58.13  Aligned_cols=43  Identities=16%  Similarity=0.186  Sum_probs=40.5

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWH  213 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~  213 (395)
                      ...||+||.++..+++..||.+|..|+..|++||..+|-..|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHh
Confidence            4689999999999999999999999999999999999998775

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.30  E-value=0.00023  Score=58.25  Aligned_cols=44  Identities=25%  Similarity=0.434  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhh
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN  163 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~  163 (395)
                      ...||+||.++..+....|| ++|..|+..||+||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence            45899999999999999999 789999999999999999988753

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.30  E-value=0.00027  Score=54.82  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=40.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHH-HccCCChhhhhhhhhh
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQNWNLIAE-KLEGRSGKSCRLRWFN  163 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk-~lpgRt~~QCr~RW~~  163 (395)
                      ....||+||-++..+.+.+|| ++|..|++ .|++|+..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            346899999999999999999 78999999 5899999999988763

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.22  E-value=0.0011  Score=66.44  Aligned_cols=103  Identities=22%  Similarity=0.393  Sum_probs=81.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-CCChhhhhhhhhhcc---------------------------------
Q 047550          120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQL---------------------------------  165 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-gRt~~QCr~RW~~~L---------------------------------  165 (395)
                      +.||.-|=..++.+..+||..+-..||..|. |.|...++. |...+                                 
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999888999999997 899988874 22211                                 


Q ss_pred             ---------cc----------c-cccCCCCHHHHHHHHHHHHHcC----Cchhhhhhc------------CCCCCHHHHH
Q 047550          166 ---------DP----------R-INKRAFSEDEEERLMAAHRVYG----NKWAMIARL------------FPGRTDNAVK  209 (395)
Q Consensus       166 ---------~p----------~-l~kg~WT~EED~~Ll~lv~~~G----~kWs~IA~~------------l~gRT~~qck  209 (395)
                               +|          . .+...||++||..||-++.+||    +.|.+|-..            |..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                     01          0 1345799999999999999999    459999332            5779999999


Q ss_pred             HHHHHHHHHHHHhh
Q 047550          210 NHWHVIMARKYREQ  223 (395)
Q Consensus       210 nRw~~ilkkk~~~~  223 (395)
                      .|...|++-..+..
T Consensus       283 rRc~tLi~~IeKE~  296 (374)
T 2y9y_A          283 RRGNTLLQCLEKEF  296 (374)
T ss_dssp             HHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999997655443

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.03  E-value=0.00041  Score=55.29  Aligned_cols=48  Identities=17%  Similarity=0.431  Sum_probs=39.7

Q ss_pred             cCCCCHHHHHHHHHHHHHcCC----------chhhhhhcCC----CCCHHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGN----------KWAMIARLFP----GRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~----------kWs~IA~~l~----gRT~~qcknRw~~ilkk  218 (395)
                      ...||.+|-..||++..++..          .|..||..|.    .||+.||+++|.+|.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999976321          3999998763    69999999999988753

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.01  E-value=0.00058  Score=55.54  Aligned_cols=46  Identities=13%  Similarity=0.309  Sum_probs=41.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCC--ChHHHHHHHccCCChhhhhhhhhhcc
Q 047550          120 GHWRPAEDSKLKELVALYGP--QNWNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~--~nW~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      -.||.|||..|+...++-|.  ..|..||+.|.+|++.|+++|++.++
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            36999999999999999985  36999999999999999999997643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.97  E-value=0.00059  Score=54.35  Aligned_cols=49  Identities=24%  Similarity=0.405  Sum_probs=40.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC---------hHHHHHHHcc----CCChhhhhhhhhhccc
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQ---------NWNLIAEKLE----GRSGKSCRLRWFNQLD  166 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~---------nW~kIAk~lp----gRt~~QCr~RW~~~L~  166 (395)
                      +...||.+|-..|+.+.......         .|..||..|.    .||+.||+.+|.++..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k   64 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK   64 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999864211         4999999983    6999999999988653

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.83  E-value=0.0002  Score=55.31  Aligned_cols=45  Identities=18%  Similarity=0.353  Sum_probs=40.5

Q ss_pred             CCCHHHHHHHHHHHHHhCC--ChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          121 HWRPAEDSKLKELVALYGP--QNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       121 ~WT~EED~~L~~lV~~yG~--~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      .||.|||..|+...++-|.  ..|..||+.| +|++.|+.+|+..++.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            6999999999999999985  3699999999 9999999999987653

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.92  E-value=0.0063  Score=49.77  Aligned_cols=46  Identities=20%  Similarity=0.406  Sum_probs=41.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHHHcc-----CCChhhhhhhhhhccc
Q 047550          120 GHWRPAEDSKLKELVALYGPQNWNLIAEKLE-----GRSGKSCRLRWFNQLD  166 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~lp-----gRt~~QCr~RW~~~L~  166 (395)
                      ..||.||...|++|+.+|. ..|..|+....     .||..+.++||..+..
T Consensus        31 ~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~   81 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999 66999999983     6999999999987654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.64  E-value=0.17  Score=38.57  Aligned_cols=48  Identities=17%  Similarity=0.175  Sum_probs=40.9

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCc---hhhhhhcC--CCCCHHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYGNK---WAMIARLF--PGRTDNAVKNHWHVIM  216 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~l--~gRT~~qcknRw~~il  216 (395)
                      ..+-.||+|..+..+++|.++|..   +..|.+.|  +|.|..+|+.+.+++.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999954   78998875  6899999999987654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=93.48  E-value=0.18  Score=38.41  Aligned_cols=49  Identities=12%  Similarity=0.080  Sum_probs=41.6

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCh--HHHHHHHc--cCCChhhhhhhhhhc
Q 047550          116 VCSRGHWRPAEDSKLKELVALYGPQN--WNLIAEKL--EGRSGKSCRLRWFNQ  164 (395)
Q Consensus       116 ~~~kg~WT~EED~~L~~lV~~yG~~n--W~kIAk~l--pgRt~~QCr~RW~~~  164 (395)
                      ...+-.||+|.-++.+++|+..|..+  ++.|.+.|  +|.|..+++.+.+.|
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34677999999999999999999432  89999998  689999999887654

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.91  E-value=0.16  Score=49.68  Aligned_cols=48  Identities=23%  Similarity=0.306  Sum_probs=42.4

Q ss_pred             cCCCCHHHHHHHHHHHHHcCC-chhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGN-KWAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~-kWs~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                      .+.||..|...++.++.+||. .|..||..|+|+|...|+..+.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            457999999999999999994 799999999999999998777666654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.08  E-value=0.34  Score=43.89  Aligned_cols=50  Identities=18%  Similarity=0.358  Sum_probs=41.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHcC---Cchhhhhhc--CCCCCHHHHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYG---NKWAMIARL--FPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G---~kWs~IA~~--l~gRT~~qcknRw~~ilkk  218 (395)
                      -....||+.|=..|+.++.+||   .+|..|+..  |.+||...++..+..++..
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            3567899999999999999999   579999864  7899999999888777754

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=85.96  E-value=0.51  Score=45.32  Aligned_cols=28  Identities=36%  Similarity=0.606  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHH
Q 047550          120 GHWRPAEDSKLKELVALYGPQNWNLIAE  147 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~~nW~kIAk  147 (395)
                      ..|+.+||..|+..|.+||-++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	395
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-10
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-18
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-07
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	6e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-05
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	7e-14
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	0.003
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	2e-13
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	9e-07
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-08
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	4e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	1e-09
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	7e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	9e-10
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	8e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	2e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	9e-10
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-04
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-09
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-08
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	1e-04
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	0.002

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (192), Expect = 4e-19
 Identities = 25/49 (51%), Positives = 34/49 (69%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           +G W   ED +L +LV  YGP+ W++IA+ L+GR GK CR RW N L+P
Sbjct: 3   KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 169 INKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWH 213
           + K  ++++E++RL+   + YG  +W++IA+   GR     +  WH
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWH 46

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.3 bits (188), Expect = 2e-18
 Identities = 19/49 (38%), Positives = 26/49 (53%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDP 167
           +  W   ED KLK+LV   G  +W +IA  L  R+   C+ RW   L+P
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.8 bits (127), Expect = 4e-10
 Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 171 KRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWH 213
           K  ++ +E+E+L       G + W +IA   P RTD   ++ W 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQ 44

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 76.1 bits (187), Expect = 5e-18
 Identities = 10/78 (12%), Positives = 26/78 (33%), Gaps = 5/78 (6%)

Query: 119 RGHWRPAEDSKLKELVALYGPQ-----NWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRA 173
           +  +   ED  + ++V     +      ++ I+  +   +G S R R+   L  R+    
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 174 FSEDEEERLMAAHRVYGN 191
             +   + +         
Sbjct: 61  EVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 9/49 (18%), Positives = 24/49 (48%), Gaps = 6/49 (12%)

Query: 171 KRAFSEDEEERLMAAHRVYGNK------WAMIARLFPGRTDNAVKNHWH 213
           K +F+++E+E ++   R    +      +  I+   P  T N++++ + 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFR 49

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 6e-14
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEK--LEGRSGKSCRLRWFNQLDPRIN 170
           +  W   E   +K  V  YG  NW  I++      R+    + RW       +N
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 55

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 171 KRAFSEDEEERLMAAHRVYGNK-WAMIARL--FPGRTDNAVKNHWHVIM 216
           K+ ++ +E E + A  + YG   WA I++   F  RT   +K+ W  + 
Sbjct: 2   KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 50

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 64.3 bits (156), Expect = 7e-14
 Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 122 WRPAEDSKLKELVALYGPQNWNLIAE----KLEGRSGKSCRLRWFNQLDPRI------NK 171
           +  AE   L E V   G   W  +        + R+    + +W   +            
Sbjct: 3   FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 172 RAFSEDEEERLMAAHRVYGNK 192
               +D  +R++AAH  +  +
Sbjct: 63  EPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 34.3 bits (78), Expect = 0.003
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 172 RAFSEDEEERLMAAHRVYGNK-WAMIARL----FPGRTDNAVKNHWHVIMARKYREQSSA 226
           R FS  E E L+ A    G   W  +          RT   +K+ W  ++          
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ- 59

Query: 227 YYRRRKFLNQVVDDKKLEA 245
             RR + + Q + D+ L A
Sbjct: 60  --RRGEPVPQDLLDRVLAA 76

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 2/47 (4%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEK--LEGRSGKSCRLRWFN 163
           R  W   ED  L+  V  YG  NW+ I        R+    + RW  
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 9e-07
 Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 171 KRAFSEDEEERLMAAHRVYGNK-WAMIARLFP--GRTDNAVKNHWHVIM 216
           ++A+  +E++ L +  R YG   W+ I   +    RT   +K+ W  + 
Sbjct: 2   RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 50

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.8 bits (150), Expect = 2e-13
 Identities = 24/46 (52%), Positives = 35/46 (76%)

Query: 171 KRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIM 216
           K +++E+E+  +  AH+  GN+WA IA+L PGRTDNA+KNHW+  M
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (134), Expect = 4e-11
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL 165
           +  W   ED  + +     G   W  IA+ L GR+  + +  W + +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 1e-11
 Identities = 8/47 (17%), Positives = 17/47 (36%)

Query: 167 PRINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWH 213
            R     +SE E+E        +   + +IA     +T      +++
Sbjct: 13  DRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYY 59

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 122 WRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163
           W   E    +E    +   N+ LIA  LE ++   C L ++ 
Sbjct: 20  WSEQEKETFREKFMQHPK-NFGLIASFLERKTVAECVLYYYL 60

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (135), Expect = 4e-11
 Identities = 12/56 (21%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 168 RINKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQ 223
           + N R ++ +E+   + A R YG  +  I+ +   ++   VKN +     R   ++
Sbjct: 3   KCNAR-WTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNIDE 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSED 177
               W   E     + +  YG +++  I++ +  +S    +  + N    R N     ++
Sbjct: 4   CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR-RFNIDEVLQE 61

Query: 178 EEE 180
            E 
Sbjct: 62  WEA 64

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 7e-11
 Identities = 9/47 (19%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 118 SRGHWRPAEDSKLKELVALYG---PQNWNLIAEKLEGRSGKSCRLRW 161
           +   W   +   L+  +  Y       W+ IA  +  +S + C  R+
Sbjct: 11  AEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 9e-10
 Identities = 9/53 (16%), Positives = 24/53 (45%), Gaps = 4/53 (7%)

Query: 167 PRINKRAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVI 215
            R  +  +++++++ L  A + Y     + W  IAR  P ++       + ++
Sbjct: 8   ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL 60

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 8e-11
 Identities = 7/60 (11%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 122 WRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEER 181
           W   E    ++ +A +  + W  I++ +  R+    +         ++      E   ++
Sbjct: 5   WTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 174 FSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYRE 222
           ++ +E+E        +G +W  I++L   RT   VK++       K + 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (124), Expect = 9e-10
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 122 WRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFN 163
           W   E+  L E V   G  NW  +A ++  ++ + C   +  
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 174 FSEDEEERLMAAHRVYGNK-WAMIARLFPGRTDNAVKNHWH 213
           ++  EE  L+ A    G   W  +A     +T    + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 122 WRPAEDSKLKELVALYG---PQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINK 171
           W   E+   +  +A+Y    P  W  +A  +EGR+ +  +  +   L   I  
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE-ILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 172 RAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVIM 216
           R +S  E +    A  VY     ++WA +AR   GRT   VK H+ +++
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 50

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 122 WRPAEDSKLKELVALYGPQN--WNLIAEKLEGRSGKSCRLRW 161
           W    D  +  +    G Q   +++I+++L  ++      R+
Sbjct: 36  WTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRF 77

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 6/70 (8%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 152 RSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK---WAMIARLFPGRTDNAV 208
            S  +                 ++ + +  ++   +  G +   +++I++    +T   V
Sbjct: 14  ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEV 73

Query: 209 KNHWHVIMAR 218
            + +  +M  
Sbjct: 74  SHRFRELMQL 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	395
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.64
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.6
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.58
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.53
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.51
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.47
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.45
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.45
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.44
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.36
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.36
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.36
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.36
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.34
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.32
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.27
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.24
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.23
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.2
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.07
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.05
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.01
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.92
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.9
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.18
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.99
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.97
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.84
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.02
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.02
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.69
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.67
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.61
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.54
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.41
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.09
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	93.53
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	91.37
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	80.63

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=7.5e-20  Score=146.82  Aligned_cols=70  Identities=14%  Similarity=0.149  Sum_probs=64.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-----hHHHHHHHccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHH
Q 047550          119 RGHWRPAEDSKLKELVALYGPQ-----NWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRV  188 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~-----nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~  188 (395)
                      |+.||+|||++|+++|.+||..     +|.+||+.|||||+.|||+||.++|+|.++++.||.+||++|++....
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~   75 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   75 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhc
Confidence            6899999999999999999854     499999999999999999999999999999999999999988776543

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=6.2e-18  Score=123.37  Aligned_cols=52  Identities=48%  Similarity=1.042  Sum_probs=49.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR  168 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~  168 (395)
                      +.||+||+|||++|+++|.+||.++|..||+.|+|||+.||++||.++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            4789999999999999999999889999999999999999999999999984

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=3.8e-17  Score=118.07  Aligned_cols=50  Identities=38%  Similarity=0.808  Sum_probs=47.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccc
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPR  168 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~  168 (395)
                      |++||+|||++|+++|.+||.++|.+||+.|+|||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            57999999999999999999889999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=7.1e-17  Score=115.38  Aligned_cols=47  Identities=51%  Similarity=0.992  Sum_probs=44.9

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      +++||+|||++|+++|++||++|+.||.+|||||++|||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998874

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.60  E-value=3.4e-16  Score=124.33  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHHHHHH----ccCCChhhhhhhhhhccc-----cccccCCCCHHHHHHHHHHHHHcC
Q 047550          120 GHWRPAEDSKLKELVALYGPQNWNLIAEK----LEGRSGKSCRLRWFNQLD-----PRINKRAFSEDEEERLMAAHRVYG  190 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~~nW~kIAk~----lpgRt~~QCr~RW~~~L~-----p~l~kg~WT~EED~~Ll~lv~~~G  190 (395)
                      .+||+|||++|+++|.+||.++|..|++.    +++||+.||++||+++|+     +..+++.|+++|   |+..|.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            38999999999999999999899999986    479999999999999884     677888999876   566666666


Q ss_pred             Cchhh
Q 047550          191 NKWAM  195 (395)
Q Consensus       191 ~kWs~  195 (395)
                      .+|++
T Consensus        78 ~~wsq   82 (83)
T d2ckxa1          78 AYWSQ   82 (83)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77864

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6.7e-16  Score=112.39  Aligned_cols=49  Identities=27%  Similarity=0.709  Sum_probs=46.1

Q ss_pred             cccCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      +.+|+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+..|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            4789999999999999999999 689999999999999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.9e-15  Score=110.08  Aligned_cols=53  Identities=25%  Similarity=0.448  Sum_probs=48.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHHH--ccCCChhhhhhhhhhccccccc
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEK--LEGRSGKSCRLRWFNQLDPRIN  170 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~--lpgRt~~QCr~RW~~~L~p~l~  170 (395)
                      ++++||+|||++|+++|++||.++|..|++.  |++||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999998899999998  4699999999999999988764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=7.8e-15  Score=105.72  Aligned_cols=47  Identities=28%  Similarity=0.661  Sum_probs=44.4

Q ss_pred             cCCCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~ilk  217 (395)
                      |+.||+|||++|+++|.+|| ++|..||..|+|||+.||++||.+.|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            57899999999999999999 689999999999999999999999874

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=4.9e-15  Score=105.67  Aligned_cols=47  Identities=23%  Similarity=0.512  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      |++||+|||++|+++|.+||. +|..||+.|||||+.||++||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            579999999999999999995 69999999999999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.8e-14  Score=104.74  Aligned_cols=48  Identities=29%  Similarity=0.474  Sum_probs=44.3

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHHHcc--CCChhhhhhhhhhcc
Q 047550          118 SRGHWRPAEDSKLKELVALYGPQNWNLIAEKLE--GRSGKSCRLRWFNQL  165 (395)
Q Consensus       118 ~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lp--gRt~~QCr~RW~~~L  165 (395)
                      ++++||+|||++|+++|.+||.++|..|++.++  +||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999889999999864  899999999998864

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.8e-14  Score=102.93  Aligned_cols=48  Identities=25%  Similarity=0.563  Sum_probs=43.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHcC-CchhhhhhcC--CCCCHHHHHHHHHHHHH
Q 047550          170 NKRAFSEDEEERLMAAHRVYG-NKWAMIARLF--PGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       170 ~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~l--~gRT~~qcknRw~~ilk  217 (395)
                      ++++||+|||+.|+++|.+|| ++|..|++.+  .|||+.||++||++|.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            478999999999999999999 5899999875  58999999999998764

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.4e-14  Score=105.15  Aligned_cols=50  Identities=28%  Similarity=0.567  Sum_probs=45.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHcC-Cchhhhhhc--CCCCCHHHHHHHHHHHHHHH
Q 047550          170 NKRAFSEDEEERLMAAHRVYG-NKWAMIARL--FPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       170 ~kg~WT~EED~~Ll~lv~~~G-~kWs~IA~~--l~gRT~~qcknRw~~ilkkk  219 (395)
                      ++++||+|||++|+++|++|| ++|..|++.  |++||+.||++||+++++..
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            468999999999999999999 689999997  56999999999999988754

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.2e-14  Score=101.27  Aligned_cols=44  Identities=23%  Similarity=0.484  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhc
Q 047550          121 HWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQ  164 (395)
Q Consensus       121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~  164 (395)
                      .||+|||++|+++|.+||.++|..||+.|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            59999999999999999988999999999999999999999876

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.4e-13  Score=101.49  Aligned_cols=50  Identities=22%  Similarity=0.332  Sum_probs=46.4

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIMARKY  220 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~ilkkk~  220 (395)
                      ...||+|||++|+++|.+||.+|..||.+|++||+.||++||+.++++..
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~   51 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKV   51 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999999999999999999887654

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3e-13  Score=96.16  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHH
Q 047550          173 AFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       173 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~i  215 (395)
                      .||+|||++|+++|.+|| ++|..||+.|+|||+.||++||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999865

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.36  E-value=7.8e-14  Score=111.35  Aligned_cols=52  Identities=19%  Similarity=0.489  Sum_probs=47.6

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCc------hhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 047550          171 KRAFSEDEEERLMAAHRVYGNK------WAMIARLFPGRTDNAVKNHWHVIMARKYRE  222 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~k------Ws~IA~~l~gRT~~qcknRw~~ilkkk~~~  222 (395)
                      ++.||+|||++|+++|.+||.+      |.+||..|||||+.|||+||+..|.+.++.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~   58 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEY   58 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccC
Confidence            5799999999999999999964      999999999999999999999999776643

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.3e-13  Score=103.78  Aligned_cols=58  Identities=14%  Similarity=0.234  Sum_probs=52.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccccccccCCCCHH
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINKRAFSED  177 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~p~l~kg~WT~E  177 (395)
                      ...||+|||++|+++|..|| .+|..||+.||+||+.||++||.+++++..+.+.+.+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~   59 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKET   59 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCC
T ss_pred             CCCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            36899999999999999999 78999999999999999999999999887777766544

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=6.5e-13  Score=98.77  Aligned_cols=50  Identities=18%  Similarity=0.427  Sum_probs=45.2

Q ss_pred             ccccccCCCCHHHHHHHHHHHHHcCC----chhhhhhcCCCCCHHHHHHHHHHH
Q 047550          166 DPRINKRAFSEDEEERLMAAHRVYGN----KWAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       166 ~p~l~kg~WT~EED~~Ll~lv~~~G~----kWs~IA~~l~gRT~~qcknRw~~i  215 (395)
                      .+...+++||+|||++|+++|.+||.    +|.+||..|||||+.||++||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            34567789999999999999999995    599999999999999999999865

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.3e-13  Score=98.85  Aligned_cols=51  Identities=18%  Similarity=0.315  Sum_probs=46.2

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCCC---hHHHHHHHccCCChhhhhhhhhh
Q 047550          113 LSKVCSRGHWRPAEDSKLKELVALYGPQ---NWNLIAEKLEGRSGKSCRLRWFN  163 (395)
Q Consensus       113 l~p~~~kg~WT~EED~~L~~lV~~yG~~---nW~kIAk~lpgRt~~QCr~RW~~  163 (395)
                      ..+...+++||+|||++|+++|..||..   +|.+||+.|||||+.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4566778899999999999999999965   59999999999999999999974

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.27  E-value=3.6e-12  Score=95.59  Aligned_cols=47  Identities=34%  Similarity=0.657  Sum_probs=42.8

Q ss_pred             CCCCHHHHHHHHHHHHHcCC----chhhhhhcCCCCCHHHHHHHHHHHHHH
Q 047550          172 RAFSEDEEERLMAAHRVYGN----KWAMIARLFPGRTDNAVKNHWHVIMAR  218 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G~----kWs~IA~~l~gRT~~qcknRw~~ilkk  218 (395)
                      .+||+|||++|+++|.+||.    +|.+||..|||||+.||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            47999999999999999995    499999999999999999999877643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=3e-12  Score=103.26  Aligned_cols=71  Identities=10%  Similarity=0.131  Sum_probs=62.3

Q ss_pred             ccCCChhhhhhhhhhccccccccCCCCHHHHHHHHHHHHHcCCc---hhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 047550          149 LEGRSGKSCRLRWFNQLDPRINKRAFSEDEEERLMAAHRVYGNK---WAMIARLFPGRTDNAVKNHWHVIMARK  219 (395)
Q Consensus       149 lpgRt~~QCr~RW~~~L~p~l~kg~WT~EED~~Ll~lv~~~G~k---Ws~IA~~l~gRT~~qcknRw~~ilkkk  219 (395)
                      +|..+..++..++.+..........||.|||+.||+.++++|.+   |..||+.|+||+++|||+||+.+++..
T Consensus        11 ~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_          11 LPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            45667777777777777777788899999999999999999977   999999999999999999999999654

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.23  E-value=1.7e-12  Score=97.47  Aligned_cols=45  Identities=20%  Similarity=0.487  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---hHHHHHHHccCCChhhhhhhhhhc
Q 047550          120 GHWRPAEDSKLKELVALYGPQ---NWNLIAEKLEGRSGKSCRLRWFNQ  164 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~~---nW~kIAk~lpgRt~~QCr~RW~~~  164 (395)
                      .+||+|||++|+++|..||.+   .|.+||..|||||+.||++||..+
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L   49 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEIL   49 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            479999999999999999965   499999999999999999999643

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.20  E-value=9.8e-12  Score=98.16  Aligned_cols=51  Identities=25%  Similarity=0.387  Sum_probs=45.6

Q ss_pred             CCCCHHHHHHHHHHHHHcC-Cchhhhhhc----CCCCCHHHHHHHHHHHHHHHHHh
Q 047550          172 RAFSEDEEERLMAAHRVYG-NKWAMIARL----FPGRTDNAVKNHWHVIMARKYRE  222 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G-~kWs~IA~~----l~gRT~~qcknRw~~ilkkk~~~  222 (395)
                      .+||.|||+.|+++|.+|| ++|..|++.    +++||+.||++||+++++.....
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            3799999999999999999 589999975    68999999999999999776543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.3e-11  Score=90.61  Aligned_cols=46  Identities=20%  Similarity=0.302  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~il  216 (395)
                      ...||+|||++|++++..||.+|..||..|+|||..||++||....
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999998765

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3.8e-11  Score=91.07  Aligned_cols=47  Identities=15%  Similarity=0.149  Sum_probs=43.2

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCchhhhhhcCCCCCHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYGNKWAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l~gRT~~qcknRw~~i  215 (395)
                      ....+||+|||++|++++.+||.+|..||..|||||..||++||...
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34568999999999999999999999999999999999999999753

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.7e-10  Score=86.62  Aligned_cols=47  Identities=15%  Similarity=0.309  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhccc
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L~  166 (395)
                      ..+||++||++|++++..|| .+|..||..|+|||..||+++|.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            35799999999999999999 679999999999999999999988653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.2e-10  Score=86.81  Aligned_cols=48  Identities=23%  Similarity=0.360  Sum_probs=43.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhhhhhhcc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      ....+||+|||++|++++..|| .+|..||..|||||..||+++|....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999 68999999999999999999997543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=2.6e-10  Score=91.79  Aligned_cols=69  Identities=12%  Similarity=0.127  Sum_probs=53.5

Q ss_pred             cCCCCchhHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHhCCCh--HHHHHHHccCCChhhhhhhhhhcc
Q 047550           97 VDGYEDMEDVKKMDGGLSKVCSRGHWRPAEDSKLKELVALYGPQN--WNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus        97 lpgRt~~qcr~Rw~~~l~p~~~kg~WT~EED~~L~~lV~~yG~~n--W~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      +|..+..+...++.+..++......||.|||+.|++.++++|...  |..||+.|+||++.||++||..++
T Consensus        11 ~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          11 LPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             CCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            333333333344444555666778999999999999999999543  999999999999999999997654

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=8.1e-07  Score=65.31  Aligned_cols=44  Identities=18%  Similarity=0.366  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHcC----CchhhhhhcCCCCCHHHHHHHHHHHH
Q 047550          172 RAFSEDEEERLMAAHRVYG----NKWAMIARLFPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G----~kWs~IA~~l~gRT~~qcknRw~~il  216 (395)
                      +.||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999997    4699999999 999999999997665

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.99  E-value=4.6e-06  Score=60.57  Aligned_cols=43  Identities=16%  Similarity=0.248  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHHHHHHHcCCchhhhhhc-CCCCCHHHHHHHHHH
Q 047550          172 RAFSEDEEERLMAAHRVYGNKWAMIARL-FPGRTDNAVKNHWHV  214 (395)
Q Consensus       172 g~WT~EED~~Ll~lv~~~G~kWs~IA~~-l~gRT~~qcknRw~~  214 (395)
                      ..||+||-.++.+++..||.+|..|++. +|+||..+|.+.|..
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3799999999999999999999999985 699999999998863

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=4.1e-06  Score=61.45  Aligned_cols=45  Identities=22%  Similarity=0.335  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---ChHHHHHHHccCCChhhhhhhhhhcc
Q 047550          120 GHWRPAEDSKLKELVALYGP---QNWNLIAEKLEGRSGKSCRLRWFNQL  165 (395)
Q Consensus       120 g~WT~EED~~L~~lV~~yG~---~nW~kIAk~lpgRt~~QCr~RW~~~L  165 (395)
                      +.||+||+.+|.+++.+|+.   ..|.+||..| ||+..+|..||..+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            57999999999999999964   3699999999 999999999997654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=8.9e-06  Score=59.01  Aligned_cols=42  Identities=24%  Similarity=0.404  Sum_probs=38.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHH-ccCCChhhhhhhhhh
Q 047550          121 HWRPAEDSKLKELVALYGPQNWNLIAEK-LEGRSGKSCRLRWFN  163 (395)
Q Consensus       121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~-lpgRt~~QCr~RW~~  163 (395)
                      .||+||-.++.+.+..|| ++|..|++. +|+|+..||.+.|..
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            699999999999999999 789999986 599999999998864

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00079  Score=46.02  Aligned_cols=46  Identities=24%  Similarity=0.566  Sum_probs=40.2

Q ss_pred             cCCCCHHHHHHHHHHHHHcCCchhhhhhcC---CCCCHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGNKWAMIARLF---PGRTDNAVKNHWHVIM  216 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~kWs~IA~~l---~gRT~~qcknRw~~il  216 (395)
                      +..||+||-.-|...|+.+|+.|..|--.+   +||+..++..+|..++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            357999999999999999999999996543   8999999999987764

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00036  Score=50.78  Aligned_cols=47  Identities=9%  Similarity=0.312  Sum_probs=40.0

Q ss_pred             cCCCCHHHHHHHHHHHHHcCC-------c--hhhhhh-cCCCCCHHHHHHHHHHHHH
Q 047550          171 KRAFSEDEEERLMAAHRVYGN-------K--WAMIAR-LFPGRTDNAVKNHWHVIMA  217 (395)
Q Consensus       171 kg~WT~EED~~Ll~lv~~~G~-------k--Ws~IA~-~l~gRT~~qcknRw~~ilk  217 (395)
                      +.+||.|||+.|++.|+++..       +  |..+++ .++.+|-.+.|+||.+.||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            468999999999999999741       2  999985 6899999999999977653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0011  Score=48.09  Aligned_cols=48  Identities=21%  Similarity=0.303  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC--------hHHHHHH-HccCCChhhhhhhhhhccc
Q 047550          119 RGHWRPAEDSKLKELVALYGPQ--------NWNLIAE-KLEGRSGKSCRLRWFNQLD  166 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~--------nW~kIAk-~lpgRt~~QCr~RW~~~L~  166 (395)
                      |-+||.|||+.|++.|.++...        =|...++ .++.+|-.+-|+||.+.|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999998422        2999996 5799999999999998774

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.67  E-value=0.0018  Score=47.73  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=39.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHcCCchh---hhhhc--CCCCCHHHHHHHHHHHH
Q 047550          170 NKRAFSEDEEERLMAAHRVYGNKWA---MIARL--FPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       170 ~kg~WT~EED~~Ll~lv~~~G~kWs---~IA~~--l~gRT~~qcknRw~~il  216 (395)
                      .+-.||+||.++.++++..+|..|.   .|.+.  ++|+|..||+.+.+++.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3557999999999999999998874   66665  68999999999987764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.61  E-value=0.0015  Score=48.12  Aligned_cols=48  Identities=13%  Similarity=0.103  Sum_probs=40.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChH--HHHHHHc--cCCChhhhhhhhhhc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGPQNW--NLIAEKL--EGRSGKSCRLRWFNQ  164 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~~nW--~kIAk~l--pgRt~~QCr~RW~~~  164 (395)
                      ..+-.||+||-++.+++++.+|..+|  ..|.+.|  +++|..||+.+.+.|
T Consensus         5 k~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            35678999999999999999996544  6888886  899999999887665

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.011  Score=40.18  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHHHHHHc---cCCChhhhhhhhhhc
Q 047550          119 RGHWRPAEDSKLKELVALYGPQNWNLIAEKL---EGRSGKSCRLRWFNQ  164 (395)
Q Consensus       119 kg~WT~EED~~L~~lV~~yG~~nW~kIAk~l---pgRt~~QCr~RW~~~  164 (395)
                      +..||.||-.-|...|+++| ..|+.|-=.+   +||+......+|..+
T Consensus         1 Rknft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            35799999999999999999 6699998777   699999888887653

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.025  Score=41.83  Aligned_cols=51  Identities=20%  Similarity=0.346  Sum_probs=43.6

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC---ChHHHHHHHccCCChhhhhhhhhhcccc
Q 047550          117 CSRGHWRPAEDSKLKELVALYGP---QNWNLIAEKLEGRSGKSCRLRWFNQLDP  167 (395)
Q Consensus       117 ~~kg~WT~EED~~L~~lV~~yG~---~nW~kIAk~lpgRt~~QCr~RW~~~L~p  167 (395)
                      ...+.|+++|-++|-.++.....   +=|..||..+..|+...|...|...+..
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            34579999999999999998763   3499999999999999999999876643

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.025  Score=41.82  Aligned_cols=47  Identities=15%  Similarity=0.300  Sum_probs=40.6

Q ss_pred             cccCCCCHHHHHHHHHHHHHcCCc----hhhhhhcCCCCCHHHHHHHHHHH
Q 047550          169 INKRAFSEDEEERLMAAHRVYGNK----WAMIARLFPGRTDNAVKNHWHVI  215 (395)
Q Consensus       169 l~kg~WT~EED~~Ll~lv~~~G~k----Ws~IA~~l~gRT~~qcknRw~~i  215 (395)
                      ..-+.|+++|=.+|-.++..+...    |..||..++.||...|...|..-
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~   56 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN   56 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhC
Confidence            345689999999999999998743    99999999999999999888654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.53  E-value=0.098  Score=43.00  Aligned_cols=69  Identities=14%  Similarity=0.211  Sum_probs=50.6

Q ss_pred             hhhhhhhhhccc--cccccCCCCHHHHHHHHHHHHHcC-Cc---hhhhhh------------cCCCCCHHHHHHHHHHHH
Q 047550          155 KSCRLRWFNQLD--PRINKRAFSEDEEERLMAAHRVYG-NK---WAMIAR------------LFPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       155 ~QCr~RW~~~L~--p~l~kg~WT~EED~~Ll~lv~~~G-~k---Ws~IA~------------~l~gRT~~qcknRw~~il  216 (395)
                      .+|++-|..+.-  +..++..+|+|||.-|+-.+.+|| ++   |..|-.            .|..||+..+..|..+++
T Consensus        31 ~~y~~P~~eL~i~y~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi  110 (128)
T d1ofcx2          31 SRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI  110 (128)
T ss_dssp             HTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred             HHhcChHHHhhhhccccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHH
Confidence            455555554321  233445799999999999999999 55   888742            247899999999999999


Q ss_pred             HHHHHhh
Q 047550          217 ARKYREQ  223 (395)
Q Consensus       217 kkk~~~~  223 (395)
                      +-..+..
T Consensus       111 ~~i~kE~  117 (128)
T d1ofcx2         111 TLIEREN  117 (128)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7665543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.37  E-value=0.28  Score=34.14  Aligned_cols=44  Identities=23%  Similarity=0.339  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHHHcC-CchhhhhhcCCCCCHHHHHHHHHHHH
Q 047550          173 AFSEDEEERLMAAHRVYG-NKWAMIARLFPGRTDNAVKNHWHVIM  216 (395)
Q Consensus       173 ~WT~EED~~Ll~lv~~~G-~kWs~IA~~l~gRT~~qcknRw~~il  216 (395)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+...+..-
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            499999999999999999 57999999999999999987554433

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.63  E-value=0.71  Score=31.96  Aligned_cols=39  Identities=18%  Similarity=0.353  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHHHHHHhCCChHHHHHHHccCCChhhhhh
Q 047550          121 HWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRL  159 (395)
Q Consensus       121 ~WT~EED~~L~~lV~~yG~~nW~kIAk~lpgRt~~QCr~  159 (395)
                      .|+..|=..++.+..+||..+-..||..|.|+|...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence            499999999999999999889999999999999998765