Citrus Sinensis ID: 047555
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 593 | 2.2.26 [Sep-21-2011] | |||||||
| Q9STW6 | 718 | Heat shock 70 kDa protein | yes | no | 0.930 | 0.768 | 0.858 | 0.0 | |
| Q9LTX9 | 718 | Heat shock 70 kDa protein | no | no | 0.929 | 0.767 | 0.842 | 0.0 | |
| Q02028 | 706 | Stromal 70 kDa heat shock | N/A | no | 0.922 | 0.774 | 0.864 | 0.0 | |
| Q08080 | 599 | Stromal 70 kDa heat shock | N/A | no | 0.718 | 0.711 | 0.938 | 0.0 | |
| Q8DI58 | 640 | Chaperone protein dnaK2 O | yes | no | 0.809 | 0.75 | 0.794 | 0.0 | |
| P22358 | 636 | Chaperone protein dnaK2 O | N/A | no | 0.811 | 0.756 | 0.777 | 0.0 | |
| Q8YW74 | 633 | Chaperone protein dnaK2 O | yes | no | 0.809 | 0.758 | 0.781 | 0.0 | |
| P29215 | 627 | Chaperone protein dnaK OS | yes | no | 0.811 | 0.767 | 0.769 | 0.0 | |
| Q6B8V2 | 621 | Chaperone protein dnaK OS | N/A | no | 0.811 | 0.774 | 0.760 | 0.0 | |
| Q85FW4 | 607 | Chaperone protein dnaK OS | N/A | no | 0.811 | 0.792 | 0.758 | 0.0 |
| >sp|Q9STW6|HSP7F_ARATH Heat shock 70 kDa protein 6, chloroplastic OS=Arabidopsis thaliana GN=HSP70-6 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 955 bits (2468), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/559 (85%), Positives = 505/559 (90%), Gaps = 7/559 (1%)
Query: 39 STTQIHSLGNIPL----SSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNE 94
S QIH LG I SS+R + PR+AFFG G F P +AFL++
Sbjct: 4 SAAQIHVLGGIGFASSSSSKRNLNGKGGTFMPRSAFFGTRTG---PFSTPTSAFLRMGTR 60
Query: 95 KNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK 154
R VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK
Sbjct: 61 NGGGASRYAVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK 120
Query: 155 IGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCP 214
GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKM+EVD+ESKQVSYRVVRDEN NVKL+CP
Sbjct: 121 SGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMNEVDEESKQVSYRVVRDENNNVKLECP 180
Query: 215 AIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLE 274
AI KQFAAEEISAQVLRKLVDDAS+FLNDK+TKAV+TVPAYFNDSQRTATKDAGRIAGLE
Sbjct: 181 AINKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLE 240
Query: 275 VLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 334
VLRIINEPTAASLAYGF+RK NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG
Sbjct: 241 VLRIINEPTAASLAYGFDRKANETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 300
Query: 335 DDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITAT 394
DDFDKRVVDWLA FK+DEG+ LL DKQALQRLTEAAEKAK+ELSSLTQ N+SLPFITAT
Sbjct: 301 DDFDKRVVDWLAAEFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLPFITAT 360
Query: 395 ADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAV 454
ADGPKHIETTLTRAKFEELCSDLLDR++ PVE +LRDAKLSF D+DEVILVGGSTRIPAV
Sbjct: 361 ADGPKHIETTLTRAKFEELCSDLLDRVRTPVENSLRDAKLSFKDIDEVILVGGSTRIPAV 420
Query: 455 QELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMT 514
QELV+K+TGK+PNVTVNPDEVVALGAAVQ GVLAGDVSDIVLLDVTPLSIGLETLGGVMT
Sbjct: 421 QELVRKVTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETLGGVMT 480
Query: 515 KIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV 574
KIIPRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV
Sbjct: 481 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV 540
Query: 575 PQIEVKFDIDANGILSVTA 593
PQIEVKFDIDANGILSV+A
Sbjct: 541 PQIEVKFDIDANGILSVSA 559
|
In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LTX9|HSP7G_ARATH Heat shock 70 kDa protein 7, chloroplastic OS=Arabidopsis thaliana GN=HSP70-7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/560 (84%), Positives = 508/560 (90%), Gaps = 9/560 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQ-----SSAPRTAFFGQALGRKPHFGLPNAAFLKLNN 93
S QIH LG I + +++ +S PR+ FFG R F P +AFL++
Sbjct: 4 SAAQIHILGGIGFPTSSSSSSTKNLDNKTNSIPRSVFFGN---RTSPFTTPTSAFLRMG- 59
Query: 94 EKNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT 153
+NN R VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT
Sbjct: 60 RRNNNASRYTVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT 119
Query: 154 KIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDC 213
K DRLVGQIAKRQAVVNPENTFFSVKRFIGR+M+EV +ESKQVSYRV++DENGNVKLDC
Sbjct: 120 KSKDRLVGQIAKRQAVVNPENTFFSVKRFIGRRMNEVAEESKQVSYRVIKDENGNVKLDC 179
Query: 214 PAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGL 273
PAIGKQFAAEEISAQVLRKLVDDAS+FLNDK+TKAV+TVPAYFNDSQRTATKDAGRIAGL
Sbjct: 180 PAIGKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGL 239
Query: 274 EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 333
EVLRIINEPTAASLAYGFERK+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG
Sbjct: 240 EVLRIINEPTAASLAYGFERKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 299
Query: 334 GDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITA 393
GDDFDKRVVDWLA FK+DEG+ LL DKQALQRLTEAAEKAK+ELSSLTQ N+SLPFITA
Sbjct: 300 GDDFDKRVVDWLASTFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLPFITA 359
Query: 394 TADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPA 453
TADGPKHIETTLTR KFEELCSDLLDR++ PVE +LRDAKLSF D+DEVILVGGSTRIPA
Sbjct: 360 TADGPKHIETTLTRGKFEELCSDLLDRVRTPVENSLRDAKLSFKDIDEVILVGGSTRIPA 419
Query: 454 VQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVM 513
VQ+LV+K+TGK+PNV+VNPDEVVALGAAVQ GVL+GDVSDIVLLDVTPLS+GLETLGGVM
Sbjct: 420 VQDLVRKLTGKEPNVSVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSLGLETLGGVM 479
Query: 514 TKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRG 573
TKIIPRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKS+GSFRLDGIPPAPRG
Sbjct: 480 TKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSIGSFRLDGIPPAPRG 539
Query: 574 VPQIEVKFDIDANGILSVTA 593
VPQIEVKFDIDANGILSV+A
Sbjct: 540 VPQIEVKFDIDANGILSVSA 559
|
In cooperation with other chaperones, Hsp70s stabilize preexistent proteins against aggregation and mediate the folding of newly translated polypeptides in the cytosol as well as within organelles. These chaperones participate in all these processes through their ability to recognize nonnative conformations of other proteins. They bind extended peptide segments with a net hydrophobic character exposed by polypeptides during translation and membrane translocation, or following stress-induced damage. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q02028|HSP7S_PEA Stromal 70 kDa heat shock-related protein, chloroplastic OS=Pisum sativum GN=HSP70 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 943 bits (2438), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/555 (86%), Positives = 504/555 (90%), Gaps = 8/555 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNEKNNT 98
S+ QIH LG SS +K S S +T FFGQ L H AAF KL+++ T
Sbjct: 3 SSAQIHGLGTASFSS--LKKPSSISGNSKTLFFGQRLNSN-HSPFTRAAFPKLSSK---T 56
Query: 99 RRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR 158
++ +RVV+EKVVGIDLGTTNSAVAAMEGGKPTI+TNAEGQRTTPSVVAYTK GDR
Sbjct: 57 FKKGFT--LRVVSEKVVGIDLGTTNSAVAAMEGGKPTIITNAEGQRTTPSVVAYTKNGDR 114
Query: 159 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGK 218
LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD+ESKQVSYRV+RD+NGNVKLDCPAIGK
Sbjct: 115 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVIRDDNGNVKLDCPAIGK 174
Query: 219 QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 278
FAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI
Sbjct: 175 SFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 234
Query: 279 INEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338
INEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD
Sbjct: 235 INEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 294
Query: 339 KRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGP 398
KRVVDWLA +FKRDEG+ LL DKQALQRLTE AEKAKMELSSL+Q NISLPFITATADGP
Sbjct: 295 KRVVDWLAGDFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLSQTNISLPFITATADGP 354
Query: 399 KHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELV 458
KHIETTLTRAKFEELCSDLLDRL+ PVE +LRDAKLS D+DEVILVGGSTRIPAVQELV
Sbjct: 355 KHIETTLTRAKFEELCSDLLDRLRTPVENSLRDAKLSIKDIDEVILVGGSTRIPAVQELV 414
Query: 459 KKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIP 518
KK+ GKDPNVTVNPDEVVALGAAVQ GVLAGDVSDIVLLDV+PLS+GLETLGGVMTKIIP
Sbjct: 415 KKLIGKDPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKIIP 474
Query: 519 RNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 578
RNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE
Sbjct: 475 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 534
Query: 579 VKFDIDANGILSVTA 593
VKFDIDANGILSV A
Sbjct: 535 VKFDIDANGILSVAA 549
|
Interacts with newly imported chloroplast proteins to assist in their maturation. Pisum sativum (taxid: 3888) |
| >sp|Q08080|HSP7S_SPIOL Stromal 70 kDa heat shock-related protein, chloroplastic (Fragment) OS=Spinacia oleracea GN=CHSP70 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 812 bits (2098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/426 (93%), Positives = 413/426 (96%)
Query: 168 AVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISA 227
+VVNPENTFFSVKRFIGRKM+EVD+ESKQVSY VVRDEN NVKL+CPAIGKQFAAEEISA
Sbjct: 4 SVVNPENTFFSVKRFIGRKMTEVDEESKQVSYTVVRDENNNVKLECPAIGKQFAAEEISA 63
Query: 228 QVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL 287
QVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL
Sbjct: 64 QVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL 123
Query: 288 AYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347
AYGFE+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR+VDWLA
Sbjct: 124 AYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLAS 183
Query: 348 NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTR 407
+FKRDEG+ LL DKQALQRLTE AEKAKMELSSLTQANISLPFITATADGPKHIETTLTR
Sbjct: 184 SFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATADGPKHIETTLTR 243
Query: 408 AKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN 467
AKFEEL SDLLDRL+ PVE +LRDAKLSF+DLDEVILVGGSTRIPAV ELVKKMTGK PN
Sbjct: 244 AKFEELWSDLLDRLRTPVENSLRDAKLSFSDLDEVILVGGSTRIPAVIELVKKMTGKAPN 303
Query: 468 VTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSK 527
VTVNPDEVVALGAAVQ GVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSK
Sbjct: 304 VTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSK 363
Query: 528 SEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 587
SEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ+EVKFDIDANG
Sbjct: 364 SEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQVEVKFDIDANG 423
Query: 588 ILSVTA 593
ILSVTA
Sbjct: 424 ILSVTA 429
|
Interacts with newly imported chloroplast proteins to assist in their maturation. Spinacia oleracea (taxid: 3562) |
| >sp|Q8DI58|DNAK2_THEEB Chaperone protein dnaK2 OS=Thermosynechococcus elongatus (strain BP-1) GN=dnaK2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/481 (79%), Positives = 438/481 (91%), Gaps = 1/481 (0%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVVAYTK GDRLVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVAYTKNGDRLVGQIAKRQAVMNP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
ENTF+SVKRFIGR+ EV E+ +VSY+V+ + NGNVKLDCPA+GKQFA EEISAQVLRK
Sbjct: 63 ENTFYSVKRFIGRRFDEVTHEATEVSYKVL-NVNGNVKLDCPALGKQFAPEEISAQVLRK 121
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
L +DASK+L +++T+AV+TVPAYFNDSQR ATKDAG+IAGLEVLRIINEPTAASLAYG +
Sbjct: 122 LKEDASKYLGEEVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLD 181
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+K NETILVFDLGGGTFDVS+LEVGDGVFEVL+TSGDTHLGGDDFDK++VD+LAE+F+
Sbjct: 182 KKANETILVFDLGGGTFDVSILEVGDGVFEVLATSGDTHLGGDDFDKKIVDYLAESFRAQ 241
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
EG+ L D+QALQRLTEAAEKAK+ELSS+ Q I+LPFITAT DGPKH++ TLTRAKFEE
Sbjct: 242 EGIDLRKDRQALQRLTEAAEKAKIELSSVMQTEINLPFITATQDGPKHLDMTLTRAKFEE 301
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
LCSDL+DR + PVE AL+DAKLS + +DEV+LVGGSTRIPA+QELVK++ GKDPN +VNP
Sbjct: 302 LCSDLIDRCRVPVEQALKDAKLSKDQIDEVVLVGGSTRIPAIQELVKRLLGKDPNQSVNP 361
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAA+Q GVLAG+V DI+LLDVTPLS+G+ETLGGVMTKIIPRNTT+PT KSEVFS
Sbjct: 362 DEVVAVGAAIQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFS 421
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
TA DGQT+VEI+VLQGERE DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGIL+VT
Sbjct: 422 TAVDGQTNVEIHVLQGEREMAADNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILNVT 481
Query: 593 A 593
A
Sbjct: 482 A 482
|
Acts as a chaperone. Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) |
| >sp|P22358|DNAK2_SYNY3 Chaperone protein dnaK2 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=dnaK2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/481 (77%), Positives = 433/481 (90%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVV Y K GDRLVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVGYAKNGDRLVGQIAKRQAVMNP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
NTF+SVKRFIGRK E+ +E+ +V+Y VV+D NGNVKLDCPA GKQFA EEISAQVLRK
Sbjct: 63 GNTFYSVKRFIGRKFDEITNEATEVAYSVVKDGNGNVKLDCPAQGKQFAPEEISAQVLRK 122
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
LVDDASK+L + +T+AV+TVPAYFNDSQR ATKDAG+IAG+EVLRIINEPTAASLAYG +
Sbjct: 123 LVDDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGIEVLRIINEPTAASLAYGLD 182
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+K+NETILVFDLGGGTFDVS+LEVG+GVFEVL+TSGDTHLGGDDFDK++VD+LA F++
Sbjct: 183 KKDNETILVFDLGGGTFDVSILEVGEGVFEVLATSGDTHLGGDDFDKKIVDFLAGEFQKA 242
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
EG+ L DKQALQRLTEAAEKAK+ELS ++Q I+LPFITAT DGPKH++TTL+RAKFEE
Sbjct: 243 EGIDLRKDKQALQRLTEAAEKAKIELSGVSQTEINLPFITATQDGPKHLDTTLSRAKFEE 302
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
+CSDL+DR PVE A+RDAK+ + LDE++LVGGSTRIPAVQE+VKK+ GKDPN VNP
Sbjct: 303 ICSDLIDRCGIPVENAIRDAKIDKSALDEIVLVGGSTRIPAVQEVVKKILGKDPNQGVNP 362
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAA+QGGVL+G+V DI+LLDV+PLS+G+ETLGGVMTKIIPRNTT+PT KSE FS
Sbjct: 363 DEVVAVGAAIQGGVLSGEVKDILLLDVSPLSLGVETLGGVMTKIIPRNTTIPTKKSETFS 422
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
TA DGQ++VEI+VLQGERE DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGIL+VT
Sbjct: 423 TAVDGQSNVEIHVLQGEREMANDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILNVT 482
Query: 593 A 593
A
Sbjct: 483 A 483
|
Acts as a chaperone. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) |
| >sp|Q8YW74|DNAK2_NOSS1 Chaperone protein dnaK2 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=dnaK2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/481 (78%), Positives = 435/481 (90%), Gaps = 1/481 (0%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPSVVA+ K GD LVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSCVAVMEGGKPTVIANAEGFRTTPSVVAFAKNGDTLVGQIAKRQAVMNP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
ENTF+SVKRFIGR+ EV +E+ +VSY+V+ GNVK+D P GKQFA EEISA+VLRK
Sbjct: 63 ENTFYSVKRFIGRRYDEVTNEATEVSYKVLS-SGGNVKVDSPGAGKQFAPEEISAKVLRK 121
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
LV+DASK+L + +T+AV+TVPAYFNDSQR ATKDAG+IAG+EV+RIINEPTAASLAYGF+
Sbjct: 122 LVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGIEVMRIINEPTAASLAYGFD 181
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+K+NETILVFDLGGGTFDVSVLEVGDGVFEVL+TSGDTHLGGDDFDK++VD+LAE F++D
Sbjct: 182 KKSNETILVFDLGGGTFDVSVLEVGDGVFEVLATSGDTHLGGDDFDKKIVDFLAEQFRKD 241
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
EG+ L DKQALQRLTEAAEKAK+ELSS+TQA I+LPFITAT DGPKH++ TLTRAKFEE
Sbjct: 242 EGIDLRKDKQALQRLTEAAEKAKIELSSVTQAEINLPFITATQDGPKHLDMTLTRAKFEE 301
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
LC+DL+DR + PVE ALRDAKL ++DEV+LVGGSTRIPAVQ+LVK + G++PN TVNP
Sbjct: 302 LCADLIDRCRIPVEQALRDAKLKKENIDEVVLVGGSTRIPAVQQLVKNLLGREPNQTVNP 361
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAA+Q GVL G+V+ I+LLDVTPLS+G+ETLGGVMTKIIPRNTT+PT KSEVFS
Sbjct: 362 DEVVAVGAAIQAGVLGGEVTGILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFS 421
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
TA DGQT+VEI+VLQGEREF DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGIL+VT
Sbjct: 422 TAVDGQTNVEIHVLQGEREFANDNKSLGTFRLDGIPPAPRGVPQIEVVFDIDANGILNVT 481
Query: 593 A 593
A
Sbjct: 482 A 482
|
Acts as a chaperone. Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|P29215|DNAK_GUITH Chaperone protein dnaK OS=Guillardia theta GN=dnaK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/481 (76%), Positives = 428/481 (88%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KVVGIDLGTTNS VA MEGGKP ++ NAEG RTTPSVVAYTK GDRLVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSVVAVMEGGKPAVIQNAEGFRTTPSVVAYTKTGDRLVGQIAKRQAVINP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
+NTF+SVKRFIGR+ EV +E KQVSY V D NGN+KLDCP++ K+FA+EEISA+VLRK
Sbjct: 63 DNTFYSVKRFIGRRSEEVSEELKQVSYIVKTDSNGNIKLDCPSLKKEFASEEISAEVLRK 122
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
LVDDASK+L + + +AV+TVPAYFNDSQR ATKDAGRIAGLEVLRIINEPTAASLAYG +
Sbjct: 123 LVDDASKYLGESVKQAVITVPAYFNDSQRQATKDAGRIAGLEVLRIINEPTAASLAYGLD 182
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD ++V WL + F+ +
Sbjct: 183 KKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDDKIVQWLLKEFETE 242
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
+ L +D+QALQRLTEA+EKAK+ELS+L+Q I+LPF+TAT GPKH+E ++TRAKFEE
Sbjct: 243 HSINLKSDRQALQRLTEASEKAKIELSNLSQTEINLPFLTATETGPKHLERSITRAKFEE 302
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
LCSDL++R+K PVE AL+DAKL + +DEV+LVGGSTRIPA+QELVK++ K PN TVNP
Sbjct: 303 LCSDLINRVKIPVENALKDAKLDSSKIDEVVLVGGSTRIPAIQELVKRILNKTPNQTVNP 362
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAAVQ GVLAG+V DI+LLDVTPLS+G+ETLGGV T+IIPRNTT+PT KSEVFS
Sbjct: 363 DEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVTTRIIPRNTTIPTKKSEVFS 422
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
TA D Q +VEI+VLQGEREF +DNKSLG+FRLDGI PAPRGVPQIEV FDIDANGILSVT
Sbjct: 423 TAVDNQPNVEIHVLQGEREFAKDNKSLGTFRLDGILPAPRGVPQIEVTFDIDANGILSVT 482
Query: 593 A 593
A
Sbjct: 483 A 483
|
Acts as a chaperone. Guillardia theta (taxid: 55529) |
| >sp|Q6B8V2|DNAK_GRATL Chaperone protein dnaK OS=Gracilaria tenuistipitata var. liui GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/481 (76%), Positives = 421/481 (87%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KVVGIDLGTTNS +A MEGGKPT++ N EG RTTPSVVAYTK D+LVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSVIAVMEGGKPTVIPNKEGLRTTPSVVAYTKKQDKLVGQIAKRQAVMNP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
ENTF+SVKRFIGRK E+ DE KQ SY V D N NVKL+CPA+ K FA EEISAQVLRK
Sbjct: 63 ENTFYSVKRFIGRKKDELGDELKQSSYNVKTDINSNVKLECPALSKDFAPEEISAQVLRK 122
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
LV+DAS +L ++T+AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAASL+YG +
Sbjct: 123 LVEDASTYLGQQVTQAVITVPAYFNDSQRQATKDAGQIAGLDVLRIINEPTAASLSYGLD 182
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+KNNETILVFDLGGGTFDVS+LEVGDGVFEVLSTSGDTHLGGDDFD+++V+WL F D
Sbjct: 183 KKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDRKIVEWLIHEFSHD 242
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
EG+ L D+QALQRLTEAAEKAKMELSSL Q +I+LPFIT+T GPKH+E +TRAKFE
Sbjct: 243 EGINLGKDRQALQRLTEAAEKAKMELSSLAQTDINLPFITSTDTGPKHLEKNITRAKFEY 302
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
LC DL++R + PV AL+DA+LS ++DE++LVGGSTRIPA+Q+LVKKM GKDPN +VNP
Sbjct: 303 LCQDLINRCEIPVNNALKDAQLSSGNIDEIVLVGGSTRIPAIQQLVKKMIGKDPNQSVNP 362
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAAVQ GVLAG+V DI+LLDVTPLS+G+ETLGGVMTKII RNTT+PT KSE+FS
Sbjct: 363 DEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIDRNTTVPTKKSEIFS 422
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
TA D Q +VEI+VLQGEREF +DNKSLG+FRLDGI PAPRGVPQIEV FDIDANGILSV
Sbjct: 423 TAVDNQPNVEIHVLQGEREFTKDNKSLGTFRLDGIMPAPRGVPQIEVIFDIDANGILSVK 482
Query: 593 A 593
A
Sbjct: 483 A 483
|
Acts as a chaperone. Gracilaria tenuistipitata var. liui (taxid: 285951) |
| >sp|Q85FW4|DNAK_CYAME Chaperone protein dnaK OS=Cyanidioschyzon merolae GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/481 (75%), Positives = 429/481 (89%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KVVGIDLGTTNS +A MEGG+PT+V N+EG RTTPSVVAYTK GD LVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSVIAVMEGGQPTVVPNSEGFRTTPSVVAYTKNGDLLVGQIAKRQAVINP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
NTF+SVKRFIGRK SE++ E+KQV Y V D GNV++ C A K FA EEISAQVLRK
Sbjct: 63 GNTFYSVKRFIGRKFSEIEQEAKQVPYPVQADGKGNVRIFCSAKDKFFAPEEISAQVLRK 122
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
LVD AS++L +K+T+AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAASLAYG +
Sbjct: 123 LVDSASQYLGEKVTQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAASLAYGLD 182
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+K+NE ILVFDLGGGTFDVS+LE+GDGVFEVL+TSGDTHLGGDDFDK++VDWL +N+KR
Sbjct: 183 KKSNEKILVFDLGGGTFDVSILEIGDGVFEVLATSGDTHLGGDDFDKKIVDWLIDNWKRI 242
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
EG+ L DKQALQRLTEAAEKAK+ELS++TQ +I+LPFITATADGPKH++ TLTRA+FE+
Sbjct: 243 EGIDLSKDKQALQRLTEAAEKAKIELSNVTQTDINLPFITATADGPKHLDQTLTRAQFEQ 302
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
L SDL++R +KPVE AL DAKLS D+DEV+LVGGSTRIPAVQ+LVK + GK PN +VNP
Sbjct: 303 LTSDLIERCRKPVEQALTDAKLSKQDIDEVVLVGGSTRIPAVQQLVKDLLGKQPNQSVNP 362
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAA+Q GVLAG+V +I+LLDV PLS+G+ETLGG+MTK+IPRNTT+PT K+E++S
Sbjct: 363 DEVVAIGAAIQAGVLAGEVKNILLLDVCPLSLGVETLGGIMTKMIPRNTTIPTRKTEIYS 422
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
TA D QT+VEI+VLQGERE +DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGILSVT
Sbjct: 423 TAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVT 482
Query: 593 A 593
A
Sbjct: 483 A 483
|
Acts as a chaperone. Cyanidioschyzon merolae (taxid: 45157) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 593 | ||||||
| 225456004 | 707 | PREDICTED: stromal 70 kDa heat shock-rel | 0.925 | 0.776 | 0.892 | 0.0 | |
| 147860809 | 693 | hypothetical protein VITISV_000728 [Viti | 0.925 | 0.792 | 0.892 | 0.0 | |
| 449442347 | 707 | PREDICTED: stromal 70 kDa heat shock-rel | 0.925 | 0.776 | 0.882 | 0.0 | |
| 1143427 | 707 | heat shock protein 70 [Cucumis sativus] | 0.925 | 0.776 | 0.881 | 0.0 | |
| 255570990 | 703 | heat shock protein, putative [Ricinus co | 0.919 | 0.775 | 0.886 | 0.0 | |
| 1928991 | 705 | heat shock protein 70 precursor [Citrull | 0.925 | 0.778 | 0.875 | 0.0 | |
| 224129424 | 705 | predicted protein [Populus trichocarpa] | 0.881 | 0.741 | 0.911 | 0.0 | |
| 224120086 | 706 | predicted protein [Populus trichocarpa] | 0.922 | 0.774 | 0.881 | 0.0 | |
| 2654208 | 715 | heat shock 70 protein [Spinacia oleracea | 0.930 | 0.772 | 0.875 | 0.0 | |
| 297803686 | 718 | cphsc70-1 [Arabidopsis lyrata subsp. lyr | 0.930 | 0.768 | 0.860 | 0.0 |
| >gi|225456004|ref|XP_002279101.1| PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 987 bits (2551), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/556 (89%), Positives = 514/556 (92%), Gaps = 7/556 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALG-RKPHFGLPNAAFLKLNNEKNN 97
ST QIH LG +S +A + ++ RT FFGQ L FGLP AFLKL K N
Sbjct: 4 STAQIHGLGTTGFAS---SSAKPKRTSSRTVFFGQRLSPSTASFGLPKTAFLKL---KRN 57
Query: 98 TRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGD 157
+RR + GPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK GD
Sbjct: 58 SRRDYSTGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 117
Query: 158 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIG 217
RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD+ESKQVSYRVVRDENGNVKL+CPAIG
Sbjct: 118 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIG 177
Query: 218 KQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 277
KQFAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR
Sbjct: 178 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 237
Query: 278 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337
IINEPTAASLAYGFE+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF
Sbjct: 238 IINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 297
Query: 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADG 397
DKRVVDWLA +FK+DEG+ LL DKQALQRLTE AEKAKMELSSLTQ NISLPFITATADG
Sbjct: 298 DKRVVDWLAASFKKDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 357
Query: 398 PKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQEL 457
PKHIETTLTRAKFEELCSDLLDRLK PVE +LRDAKLSF DLDEVILVGGSTRIPAVQEL
Sbjct: 358 PKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQEL 417
Query: 458 VKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKII 517
VKKMTGKDPNVTVNPDEVVALGAAVQ GVL+GDVSDIVLLDV+PLS+GLETLGGVMTKII
Sbjct: 418 VKKMTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVSPLSLGLETLGGVMTKII 477
Query: 518 PRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 577
PRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI
Sbjct: 478 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 537
Query: 578 EVKFDIDANGILSVTA 593
EVKFDIDANGILSVTA
Sbjct: 538 EVKFDIDANGILSVTA 553
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147860809|emb|CAN81065.1| hypothetical protein VITISV_000728 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 986 bits (2548), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/556 (89%), Positives = 514/556 (92%), Gaps = 7/556 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALG-RKPHFGLPNAAFLKLNNEKNN 97
ST QIH LG +S +A + ++ RT FFGQ L FGLP AFLKL K N
Sbjct: 4 STAQIHGLGTTGFAS---SSAKPKRTSSRTVFFGQRLSPSTASFGLPKTAFLKL---KRN 57
Query: 98 TRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGD 157
+RR + GPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK GD
Sbjct: 58 SRRDYSTGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 117
Query: 158 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIG 217
RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD+ESKQVSYRVVRDENGNVKL+CPAIG
Sbjct: 118 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIG 177
Query: 218 KQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 277
KQFAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR
Sbjct: 178 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 237
Query: 278 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337
IINEPTAASLAYGFE+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF
Sbjct: 238 IINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 297
Query: 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADG 397
DKRVVDWLA +FK+DEG+ LL DKQALQRLTE AEKAKMELSSLTQ NISLPFITATADG
Sbjct: 298 DKRVVDWLAASFKKDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 357
Query: 398 PKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQEL 457
PKHIETTLTRAKFEELCSDLLDRLK PVE +LRDAKLSF DLDEVILVGGSTRIPAVQEL
Sbjct: 358 PKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQEL 417
Query: 458 VKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKII 517
VKKMTGKDPNVTVNPDEVVALGAAVQ GVL+GDVSDIVLLDV+PLS+GLETLGGVMTKII
Sbjct: 418 VKKMTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVSPLSLGLETLGGVMTKII 477
Query: 518 PRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 577
PRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI
Sbjct: 478 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 537
Query: 578 EVKFDIDANGILSVTA 593
EVKFDIDANGILSVTA
Sbjct: 538 EVKFDIDANGILSVTA 553
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442347|ref|XP_004138943.1| PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Cucumis sativus] gi|449527805|ref|XP_004170900.1| PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Cucumis sativus] gi|124245039|gb|ABM92419.1| chloroplast HSP70 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 979 bits (2531), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/555 (88%), Positives = 515/555 (92%), Gaps = 6/555 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNEKNNT 98
ST QIH LG ++ ++ ++ SS R+ FFGQ LG F P AAFL L + N +
Sbjct: 4 STAQIHGLGAPSFAAASMRKSNNVSS--RSVFFGQKLGNSSAF--PAAAFLNLRS--NTS 57
Query: 99 RRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR 158
RR +V P+R+VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK GDR
Sbjct: 58 RRNSSVRPLRIVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR 117
Query: 159 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGK 218
LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD+ESKQVSYRVVRDENGNVKL+CPAIGK
Sbjct: 118 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIGK 177
Query: 219 QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 278
QFAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI
Sbjct: 178 QFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 237
Query: 279 INEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338
INEPTAASLAYGFE+K+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD
Sbjct: 238 INEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 297
Query: 339 KRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGP 398
KR+VDWLA NFKRDEG+ LL DKQALQRLTE AEKAKMELSSLTQANISLPFITATADGP
Sbjct: 298 KRIVDWLAANFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATADGP 357
Query: 399 KHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELV 458
KHIETT+TRAKFEELCSDLLDRLK PVE +LRDAKLSF D+DEVILVGGSTRIPAVQELV
Sbjct: 358 KHIETTITRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDIDEVILVGGSTRIPAVQELV 417
Query: 459 KKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIP 518
KKMTGK+PNVTVNPDEVVALGAAVQ GVLAGDVSDIVLLDV+PLS+GLETLGGVMTKIIP
Sbjct: 418 KKMTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKIIP 477
Query: 519 RNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 578
RNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE
Sbjct: 478 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 537
Query: 579 VKFDIDANGILSVTA 593
VKFDIDANGILSVTA
Sbjct: 538 VKFDIDANGILSVTA 552
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1143427|emb|CAA52149.1| heat shock protein 70 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 976 bits (2523), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/555 (88%), Positives = 514/555 (92%), Gaps = 6/555 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNEKNNT 98
ST QIH LG ++ ++ ++ SS R+ FFGQ LG F P AAFL L + N +
Sbjct: 4 STAQIHGLGAPSFAAASMRKSNNVSS--RSVFFGQKLGNSSAF--PAAAFLNLRS--NTS 57
Query: 99 RRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR 158
RR +V P+R+VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK GDR
Sbjct: 58 RRNSSVRPLRIVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR 117
Query: 159 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGK 218
LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD+ESKQVSYRV RDENGNVKL+CPAIGK
Sbjct: 118 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVERDENGNVKLECPAIGK 177
Query: 219 QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 278
QFAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI
Sbjct: 178 QFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 237
Query: 279 INEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338
INEPTAASLAYGFE+K+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD
Sbjct: 238 INEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 297
Query: 339 KRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGP 398
KR+VDWLA NFKRDEG+ LL DKQALQRLTE AEKAKMELSSLTQANISLPFITATADGP
Sbjct: 298 KRIVDWLAANFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATADGP 357
Query: 399 KHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELV 458
KHIETT+TRAKFEELCSDLLDRLK PVE +LRDAKLSF D+DEVILVGGSTRIPAVQELV
Sbjct: 358 KHIETTITRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDIDEVILVGGSTRIPAVQELV 417
Query: 459 KKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIP 518
KKMTGK+PNVTVNPDEVVALGAAVQ GVLAGDVSDIVLLDV+PLS+GLETLGGVMTKIIP
Sbjct: 418 KKMTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKIIP 477
Query: 519 RNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 578
RNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE
Sbjct: 478 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 537
Query: 579 VKFDIDANGILSVTA 593
VKFDIDANGILSVTA
Sbjct: 538 VKFDIDANGILSVTA 552
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570990|ref|XP_002526446.1| heat shock protein, putative [Ricinus communis] gi|223534226|gb|EEF35941.1| heat shock protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/555 (88%), Positives = 509/555 (91%), Gaps = 10/555 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNEKNNT 98
ST QIH LG I S + + SF S +T F G L K H AAFL+ ++NT
Sbjct: 4 STAQIHVLGGIGFPSSKSRKPSF-SFPKKTVFLGSNL--KSH---QTAAFLR----QSNT 53
Query: 99 RRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR 158
R GP+RVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK GDR
Sbjct: 54 NARRKYGPLRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDR 113
Query: 159 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGK 218
LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD+ESKQVSYRVVRDENGNVKLDCPAIGK
Sbjct: 114 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGK 173
Query: 219 QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 278
QFAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI
Sbjct: 174 QFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 233
Query: 279 INEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338
INEPTAASLAYGFE+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD
Sbjct: 234 INEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 293
Query: 339 KRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGP 398
KR+VDWLA NFKRDEG+ LL DKQALQRLTE AEKAKMELSSLTQ NISLPFITATADGP
Sbjct: 294 KRIVDWLAGNFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADGP 353
Query: 399 KHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELV 458
KHIETT+TRAKFEELCSDLLDRLK PVE +LRDAKLSF D+DEVILVGGSTRIPAVQELV
Sbjct: 354 KHIETTITRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDIDEVILVGGSTRIPAVQELV 413
Query: 459 KKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIP 518
KKMTGKDPNVTVNPDEVVALGAAVQ GVL+GDVSDIVLLDVTPLS+GLETLGGVMTKIIP
Sbjct: 414 KKMTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSLGLETLGGVMTKIIP 473
Query: 519 RNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 578
RNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE
Sbjct: 474 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 533
Query: 579 VKFDIDANGILSVTA 593
VKFDIDANGILSVTA
Sbjct: 534 VKFDIDANGILSVTA 548
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1928991|gb|AAC03416.1| heat shock protein 70 precursor [Citrullus lanatus] | Back alignment and taxonomy information |
|---|
Score = 970 bits (2507), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/555 (87%), Positives = 512/555 (92%), Gaps = 6/555 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNEKNNT 98
ST QIH LG ++ ++ ++ SS RT FFGQ LG F P A FLKL + N +
Sbjct: 4 STVQIHGLGAPSFAAASMRKSNHVSS--RTVFFGQKLGNSSAF--PTATFLKLRS--NIS 57
Query: 99 RRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR 158
RR +V P+R+VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEG+RTTPSVVAYTKIGDR
Sbjct: 58 RRNSSVRPLRIVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGKRTTPSVVAYTKIGDR 117
Query: 159 LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGK 218
LVGQIA RQAVVNP +TFFSVKRFIGRKMSEVD+ESKQVSYRVVRDENGNVKL+CPAIGK
Sbjct: 118 LVGQIANRQAVVNPRDTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIGK 177
Query: 219 QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 278
QFAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI
Sbjct: 178 QFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI 237
Query: 279 INEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338
INEPTAASLAYGFE+K+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD
Sbjct: 238 INEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 297
Query: 339 KRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGP 398
KR+VDWLA NFKRDEG+ LL DKQALQRLTE AEKAKMELSSLTQANISLPFITATADGP
Sbjct: 298 KRIVDWLAANFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATADGP 357
Query: 399 KHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELV 458
KHIETTLTRAKFEELCSDLL RLK PVE +LRDAKLSF D+ EV+LVGGSTRIPAVQELV
Sbjct: 358 KHIETTLTRAKFEELCSDLLYRLKTPVENSLRDAKLSFKDVHEVVLVGGSTRIPAVQELV 417
Query: 459 KKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIP 518
KKMTGK+PNVTVNPDEVVALGAAVQ GVLAGDVSDIVLLDV+PLS+GLETLGGVMTKIIP
Sbjct: 418 KKMTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKIIP 477
Query: 519 RNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 578
RNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE
Sbjct: 478 RNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 537
Query: 579 VKFDIDANGILSVTA 593
VKFDIDANGILSVTA
Sbjct: 538 VKFDIDANGILSVTA 552
|
Source: Citrullus lanatus Species: Citrullus lanatus Genus: Citrullus Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129424|ref|XP_002328713.1| predicted protein [Populus trichocarpa] gi|222839011|gb|EEE77362.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 964 bits (2491), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/531 (91%), Positives = 499/531 (93%), Gaps = 8/531 (1%)
Query: 63 SSAPRTAFFGQALGRKPHFGLPNAAFLKLNNEKNNTRRRCNVGPVRVVNEKVVGIDLGTT 122
S APR+ FFGQ L RK FLK N N +RRR + GPVR+VNEKVVGIDLGTT
Sbjct: 28 SFAPRSVFFGQNL-RKT-----TVTFLKHTN--NTSRRRYSTGPVRIVNEKVVGIDLGTT 79
Query: 123 NSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRF 182
NSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK GDRLVGQIAKRQAVVNPENTFFSVKRF
Sbjct: 80 NSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRF 139
Query: 183 IGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN 242
IGRKMSEVD+ESKQVSY+VVRDENGNVKL+CPAIGKQFAAEEISAQVLRKLVDDASKFLN
Sbjct: 140 IGRKMSEVDEESKQVSYKVVRDENGNVKLECPAIGKQFAAEEISAQVLRKLVDDASKFLN 199
Query: 243 DKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVF 302
DK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERK+NETILVF
Sbjct: 200 DKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKSNETILVF 259
Query: 303 DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQ 362
DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLA +FKRDEG+ LL DKQ
Sbjct: 260 DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAGSFKRDEGIDLLKDKQ 319
Query: 363 ALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK 422
ALQRLTE AEKAKMELSSLTQ NISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK
Sbjct: 320 ALQRLTETAEKAKMELSSLTQTNISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK 379
Query: 423 KPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAV 482
PVE +LRDAKLSF DLDEVILVGGSTRIPAVQELVKK+TGKDPNVTVNPDEVVALGAAV
Sbjct: 380 TPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAV 439
Query: 483 QGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVE 542
Q GVLAGDVSDIVLLDV+PLS+GLETLGGVMTKIIPRNTTLPTSKSEVFSTA DGQTSVE
Sbjct: 440 QAGVLAGDVSDIVLLDVSPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVE 499
Query: 543 INVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
INVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV A
Sbjct: 500 INVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVAA 550
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224120086|ref|XP_002331133.1| predicted protein [Populus trichocarpa] gi|222872861|gb|EEF09992.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2490), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/556 (88%), Positives = 503/556 (90%), Gaps = 9/556 (1%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTA-FFGQALGRKPHFGLPNAAFLKLNNEKNN 97
ST QIH LG S APR++ FFGQ L L + N
Sbjct: 4 STAQIHVLGGGGGIGGTSSIKPRFSFAPRSSVFFGQ--------NLRGTTATSLKHTNNT 55
Query: 98 TRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGD 157
+RRR + GPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK GD
Sbjct: 56 SRRRYSTGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 115
Query: 158 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIG 217
RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD+ESKQVSYRVVRDENGNVKL+CPAIG
Sbjct: 116 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLECPAIG 175
Query: 218 KQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 277
KQFAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR
Sbjct: 176 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 235
Query: 278 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337
IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF
Sbjct: 236 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 295
Query: 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADG 397
DKRVVDWLA +FKRDEG+ LL DKQALQRLTE AEKAKMELSSLTQ NISLPFITATADG
Sbjct: 296 DKRVVDWLAGDFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQTNISLPFITATADG 355
Query: 398 PKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQEL 457
PKHIETTLTRAKFEELCSDLLDRLK PVE +LRDAKLSF DLDEVILVGGSTRIPAVQ L
Sbjct: 356 PKHIETTLTRAKFEELCSDLLDRLKTPVENSLRDAKLSFKDLDEVILVGGSTRIPAVQGL 415
Query: 458 VKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKII 517
VKK+TGKDPNVTVNPDEVVALGAAVQ GVL+GDVSDIVLLDVTPLSIGLETLGGVMTKII
Sbjct: 416 VKKLTGKDPNVTVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSIGLETLGGVMTKII 475
Query: 518 PRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 577
PRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI
Sbjct: 476 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 535
Query: 578 EVKFDIDANGILSVTA 593
EVKFDIDANGILSVTA
Sbjct: 536 EVKFDIDANGILSVTA 551
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2654208|gb|AAB91471.1| heat shock 70 protein [Spinacia oleracea] gi|2773050|gb|AAB96659.1| heat shock 70 protein [Spinacia oleracea] | Back alignment and taxonomy information |
|---|
Score = 963 bits (2489), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/556 (87%), Positives = 508/556 (91%), Gaps = 4/556 (0%)
Query: 39 STTQIHSLGNIPLSSRRIKAASFQSSAPRTAFFGQALG-RKPHFGLPNAAFLKLNNEKNN 97
S TQIH LG P ++ ++ SS P + FFGQ + G P +AFL+L
Sbjct: 4 SATQIHVLGATPFTT---SSSKPSSSRPNSVFFGQKMSPSTACIGNPKSAFLRLKKSSGG 60
Query: 98 TRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGD 157
RR VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK G+
Sbjct: 61 RRRSAGVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGE 120
Query: 158 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIG 217
RLVGQIAKRQAVVNPENTFFSVKRFIGRKM+EVD+ESKQVSY VVRDEN NVKL+CPAIG
Sbjct: 121 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMTEVDEESKQVSYTVVRDENNNVKLECPAIG 180
Query: 218 KQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 277
KQFAAEEISAQVLRKLVDDASKFLNDK+TKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR
Sbjct: 181 KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVVTVPAYFNDSQRTATKDAGRIAGLEVLR 240
Query: 278 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337
IINEPTAASLAYGFE+KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF
Sbjct: 241 IINEPTAASLAYGFEKKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 300
Query: 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADG 397
DKR+VDWLA +FKRDEG+ LL DKQALQRLTE AEKAKMELSSLTQANISLPFITATADG
Sbjct: 301 DKRIVDWLASSFKRDEGIDLLKDKQALQRLTETAEKAKMELSSLTQANISLPFITATADG 360
Query: 398 PKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQEL 457
PKHIETTLTRAKFEELCSDLLDRL+ PVE +LRDAKLSF+DLDEVILVGGSTRIPAV EL
Sbjct: 361 PKHIETTLTRAKFEELCSDLLDRLRTPVENSLRDAKLSFSDLDEVILVGGSTRIPAVIEL 420
Query: 458 VKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKII 517
VKKMTGK PNVTVNPDEVVALGAAVQ GVLAGDVSDIVLLDVTPLSIGLETLGGVMTKII
Sbjct: 421 VKKMTGKAPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKII 480
Query: 518 PRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 577
PRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ+
Sbjct: 481 PRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQV 540
Query: 578 EVKFDIDANGILSVTA 593
EVKFDIDANGILSVTA
Sbjct: 541 EVKFDIDANGILSVTA 556
|
Source: Spinacia oleracea Species: Spinacia oleracea Genus: Spinacia Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297803686|ref|XP_002869727.1| cphsc70-1 [Arabidopsis lyrata subsp. lyrata] gi|297315563|gb|EFH45986.1| cphsc70-1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2472), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/559 (86%), Positives = 506/559 (90%), Gaps = 7/559 (1%)
Query: 39 STTQIHSLGNIPL----SSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLKLNNE 94
S QIH LG I SS+R + PR+AFFG G F P +AFL++
Sbjct: 4 SAAQIHVLGGIGFASSSSSKRNLNGKGGTFMPRSAFFGTRTG---PFSTPTSAFLRMGTR 60
Query: 95 KNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK 154
R VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK
Sbjct: 61 NGGGASRYAVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK 120
Query: 155 IGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCP 214
GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKM+EV +ESKQVSYRVVRDENGNVKL+CP
Sbjct: 121 SGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMNEVAEESKQVSYRVVRDENGNVKLECP 180
Query: 215 AIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLE 274
AI KQFAAEEISAQVLRKLVDDAS+FLNDK+TKAV+TVPAYFNDSQRTATKDAGRIAGLE
Sbjct: 181 AINKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLE 240
Query: 275 VLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 334
VLRIINEPTAASLAYGF+RK+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG
Sbjct: 241 VLRIINEPTAASLAYGFDRKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 300
Query: 335 DDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITAT 394
DDFDKRVVDWLA FK+DEG+ LL DKQALQRLTEAAEKAK+ELSSLTQ N+SLPFITAT
Sbjct: 301 DDFDKRVVDWLATEFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLPFITAT 360
Query: 395 ADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAV 454
ADGPKHIETTLTRAKFEELCSDLLDR+K PVE +LRDAKLSF D+DEVILVGGSTRIPAV
Sbjct: 361 ADGPKHIETTLTRAKFEELCSDLLDRVKTPVENSLRDAKLSFKDIDEVILVGGSTRIPAV 420
Query: 455 QELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMT 514
QELV+K+TGK+PNVTVNPDEVVALGAAVQ GVLAGDVSDIVLLDVTPLSIGLETLGGVMT
Sbjct: 421 QELVRKVTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETLGGVMT 480
Query: 515 KIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV 574
KIIPRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV
Sbjct: 481 KIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV 540
Query: 575 PQIEVKFDIDANGILSVTA 593
PQIEVKFDIDANGILSV+A
Sbjct: 541 PQIEVKFDIDANGILSVSA 559
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 593 | ||||||
| TAIR|locus:2135897 | 718 | cpHsc70-1 "chloroplast heat sh | 0.935 | 0.772 | 0.833 | 1.4e-238 | |
| TAIR|locus:2158834 | 718 | cpHsc70-2 "chloroplast heat sh | 0.934 | 0.771 | 0.822 | 7.6e-238 | |
| TIGR_CMR|GSU_0033 | 636 | GSU_0033 "chaperone protein dn | 0.806 | 0.751 | 0.619 | 3.3e-157 | |
| TIGR_CMR|DET_1399 | 637 | DET_1399 "chaperone protein Dn | 0.806 | 0.750 | 0.588 | 1.8e-151 | |
| SGD|S000003806 | 654 | SSC1 "Hsp70 family ATPase" [Sa | 0.812 | 0.737 | 0.584 | 1.5e-147 | |
| TIGR_CMR|SPO_0043 | 637 | SPO_0043 "chaperone protein Dn | 0.806 | 0.750 | 0.588 | 1.3e-146 | |
| POMBASE|SPAC664.11 | 674 | ssc1 "mitochondrial heat shock | 0.844 | 0.743 | 0.562 | 2.5e-145 | |
| UNIPROTKB|P0A6Y8 | 638 | dnaK [Escherichia coli K-12 (t | 0.807 | 0.750 | 0.567 | 3.2e-145 | |
| UNIPROTKB|A1A766 | 638 | dnaK "Chaperone protein DnaK" | 0.807 | 0.750 | 0.567 | 3.2e-145 | |
| UNIPROTKB|O34241 | 635 | dnaK "Chaperone protein DnaK" | 0.806 | 0.752 | 0.569 | 4e-145 |
| TAIR|locus:2135897 cpHsc70-1 "chloroplast heat shock protein 70-1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2300 (814.7 bits), Expect = 1.4e-238, P = 1.4e-238
Identities = 469/563 (83%), Positives = 495/563 (87%)
Query: 35 MATFSTTQIHSLGNIPL----SSRRIKAASFQSSAPRTAFFGQALGRKPHFGLPNAAFLK 90
MA+ S QIH LG I SS+R + PR+AFFG G P F P +AFL+
Sbjct: 1 MAS-SAAQIHVLGGIGFASSSSSKRNLNGKGGTFMPRSAFFGTRTG--P-FSTPTSAFLR 56
Query: 91 LNNEKNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 150
+ R VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV
Sbjct: 57 MGTRNGGGASRYAVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 116
Query: 151 AYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVK 210
AYTK GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKM+EVD+ESKQVSYRVVRDEN NVK
Sbjct: 117 AYTKSGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMNEVDEESKQVSYRVVRDENNNVK 176
Query: 211 LDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270
L+CPAI KQFAAEEISAQVLRKLVDDAS+FLNDK+TKAV+TVPAYFNDSQRTATKDAGRI
Sbjct: 177 LECPAINKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGRI 236
Query: 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDT 330
AGLEVLRIINEPTAASLAYGF+RK NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDT
Sbjct: 237 AGLEVLRIINEPTAASLAYGFDRKANETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDT 296
Query: 331 HLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPF 390
HLGGDDFDKRVVDWLA FK+DEG+ LL DKQALQRLTEAAEKAK+ELSSLTQ N+SLPF
Sbjct: 297 HLGGDDFDKRVVDWLAAEFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLPF 356
Query: 391 ITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTR 450
ITATADGPKHIETTLTRAKFEELCSDLLDR++ PVE +LRDAKLSF D+DEVILVGGSTR
Sbjct: 357 ITATADGPKHIETTLTRAKFEELCSDLLDRVRTPVENSLRDAKLSFKDIDEVILVGGSTR 416
Query: 451 IPAVQELVKKMTGKDPNVTVNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETLG 510
IPAVQELV+K+TGK+PNVTVNPDE DVSDIVLLDVTPLSIGLETLG
Sbjct: 417 IPAVQELVRKVTGKEPNVTVNPDEVVALGAAVQAGVLAGDVSDIVLLDVTPLSIGLETLG 476
Query: 511 GVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 570
GVMTKIIPRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA
Sbjct: 477 GVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 536
Query: 571 PRGVPQIEVKFDIDANGILSVTA 593
PRGVPQIEVKFDIDANGILSV+A
Sbjct: 537 PRGVPQIEVKFDIDANGILSVSA 559
|
|
| TAIR|locus:2158834 cpHsc70-2 "chloroplast heat shock protein 70-2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2293 (812.2 bits), Expect = 7.6e-238, P = 7.6e-238
Identities = 464/564 (82%), Positives = 497/564 (88%)
Query: 35 MATFSTTQIHSLGNI--PLSSRRIKAASFQS---SAPRTAFFGQALGRKPHFGLPNAAFL 89
MA+ S QIH LG I P SS + + S PR+ FFG R F P +AFL
Sbjct: 1 MAS-SAAQIHILGGIGFPTSSSSSSTKNLDNKTNSIPRSVFFGN---RTSPFTTPTSAFL 56
Query: 90 KLNNEKNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSV 149
++ +NN R VGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSV
Sbjct: 57 RMGR-RNNNASRYTVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSV 115
Query: 150 VAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNV 209
VAYTK DRLVGQIAKRQAVVNPENTFFSVKRFIGR+M+EV +ESKQVSYRV++DENGNV
Sbjct: 116 VAYTKSKDRLVGQIAKRQAVVNPENTFFSVKRFIGRRMNEVAEESKQVSYRVIKDENGNV 175
Query: 210 KLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGR 269
KLDCPAIGKQFAAEEISAQVLRKLVDDAS+FLNDK+TKAV+TVPAYFNDSQRTATKDAGR
Sbjct: 176 KLDCPAIGKQFAAEEISAQVLRKLVDDASRFLNDKVTKAVITVPAYFNDSQRTATKDAGR 235
Query: 270 IAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 329
IAGLEVLRIINEPTAASLAYGFERK+NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD
Sbjct: 236 IAGLEVLRIINEPTAASLAYGFERKSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 295
Query: 330 THLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLP 389
THLGGDDFDKRVVDWLA FK+DEG+ LL DKQALQRLTEAAEKAK+ELSSLTQ N+SLP
Sbjct: 296 THLGGDDFDKRVVDWLASTFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTNMSLP 355
Query: 390 FITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGST 449
FITATADGPKHIETTLTR KFEELCSDLLDR++ PVE +LRDAKLSF D+DEVILVGGST
Sbjct: 356 FITATADGPKHIETTLTRGKFEELCSDLLDRVRTPVENSLRDAKLSFKDIDEVILVGGST 415
Query: 450 RIPAVQELVKKMTGKDPNVTVNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETL 509
RIPAVQ+LV+K+TGK+PNV+VNPDE DVSDIVLLDVTPLS+GLETL
Sbjct: 416 RIPAVQDLVRKLTGKEPNVSVNPDEVVALGAAVQAGVLSGDVSDIVLLDVTPLSLGLETL 475
Query: 510 GGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPP 569
GGVMTKIIPRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRDNKS+GSFRLDGIPP
Sbjct: 476 GGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSIGSFRLDGIPP 535
Query: 570 APRGVPQIEVKFDIDANGILSVTA 593
APRGVPQIEVKFDIDANGILSV+A
Sbjct: 536 APRGVPQIEVKFDIDANGILSVSA 559
|
|
| TIGR_CMR|GSU_0033 GSU_0033 "chaperone protein dnaK" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1532 (544.3 bits), Expect = 3.3e-157, P = 3.3e-157
Identities = 300/484 (61%), Positives = 380/484 (78%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KV+GIDLGTTNS VA MEGG+P ++ NAEG RTTPS+VA+ + G+RLVGQ AKRQAV NP
Sbjct: 3 KVIGIDLGTTNSCVAVMEGGEPVVIANAEGSRTTPSMVAFAESGERLVGQQAKRQAVTNP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVS---YRVVRDENGNVKLDCPAIGKQFAAEEISAQV 229
ENT F++KR IGRK + ++ K +S +++V+ +NG+ ++ A GK ++A EISA V
Sbjct: 63 ENTLFAIKRLIGRKY-DTEEVRKDISISPFKIVKADNGDAWVE--ARGKMYSAPEISAMV 119
Query: 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
L+K+ A +L + +T AV+TVPAYFNDSQR ATKDAG+IAGL VLRIINEPTAA+LAY
Sbjct: 120 LQKMKQTAEDYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIINEPTAAALAY 179
Query: 290 GFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENF 349
G ++K +E I VFDLGGGTFD+S+LE+GDGVFEV ST+GDT LGG+DFD+RV+DW+A+ F
Sbjct: 180 GLDKKKDEKIAVFDLGGGTFDISILELGDGVFEVKSTNGDTFLGGEDFDQRVIDWIADEF 239
Query: 350 KRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAK 409
K+D+G+ L DK ALQRL EAAEKAK ELS+ + +I+LPFITA A GPKH+ L+RAK
Sbjct: 240 KKDQGIDLRGDKMALQRLKEAAEKAKCELSTSMETDINLPFITADATGPKHLTMKLSRAK 299
Query: 410 FEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVT 469
E LC+DLL++L+ P TAL+DA LS +++DEVILVGG TR+PAVQ+ V+++ GK PN
Sbjct: 300 LEALCADLLNKLEGPCRTALKDAGLSPSEVDEVILVGGMTRMPAVQKRVQEIFGKVPNKG 359
Query: 470 VNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSE 529
VNPDE DV D++LLDVTPLS+G+ETLG VMTK+I +NTT+P KS+
Sbjct: 360 VNPDEVVAIGAAIQGGVLRGDVKDVLLLDVTPLSLGIETLGSVMTKLIEKNTTIPCRKSQ 419
Query: 530 VFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 589
VFSTA D Q +V I+VLQGERE DNK+LG+F L GIPPAPRGVPQIEV FDIDANGI+
Sbjct: 420 VFSTASDNQPAVTIHVLQGEREMAIDNKTLGNFELTGIPPAPRGVPQIEVTFDIDANGIV 479
Query: 590 SVTA 593
V+A
Sbjct: 480 HVSA 483
|
|
| TIGR_CMR|DET_1399 DET_1399 "chaperone protein DnaK" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 1478 (525.3 bits), Expect = 1.8e-151, P = 1.8e-151
Identities = 288/489 (58%), Positives = 374/489 (76%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KVVGIDLGTTNS VA M+GG+P ++ +AEG PSVVA K G+R+VG+ AK QA++NP
Sbjct: 3 KVVGIDLGTTNSEVAVMQGGEPVVIPSAEGSTLIPSVVAVNKNGERIVGRQAKNQAILNP 62
Query: 173 ENTFFSVKRFIGRKMSE-------VDDESKQVSYRVVRDENGNVKLDCPAIG-KQFAAEE 224
ENT +S+KRF+GRK E V+ ++K+ Y+V++ N V++ +G K F+ E
Sbjct: 63 ENTVYSIKRFMGRKWGEPAGRELPVEADAKRKPYKVIQGNNNEVRV---VMGDKDFSPPE 119
Query: 225 ISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTA 284
+SA +L+KL DA +L +K+T+AV+TVPAYFND+QR ATKDAG IAGL+VLRIINEPTA
Sbjct: 120 VSAMILQKLKSDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGAIAGLKVLRIINEPTA 179
Query: 285 ASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDW 344
A+LAYG ++K +ETI V+DLGGGTFD+S+LE+G+G F+V ST+GDTHLGGDDFD++++DW
Sbjct: 180 AALAYGLDKKKDETIAVYDLGGGTFDISILELGEGTFQVKSTAGDTHLGGDDFDQKIIDW 239
Query: 345 LAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETT 404
L +K+D+G+ L DK ALQRL EAAEKAK+ELS++ QA I+LPFITA A GPKH+
Sbjct: 240 LIAEYKKDQGIDLSKDKTALQRLKEAAEKAKIELSTVQQAEINLPFITADASGPKHLNII 299
Query: 405 LTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK 464
LTRAK E++ DL+D+ +P AL+D+ + ++++EVILVGG TR+P VQ+ VK+ GK
Sbjct: 300 LTRAKLEQMVMDLVDKSLEPCRQALKDSGKTASEINEVILVGGQTRMPLVQQKVKEFFGK 359
Query: 465 DPNVTVNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLP 524
+PN VNPDE +VSD++LLDV PL++G+ETLGGV T +I RNTT+P
Sbjct: 360 EPNKGVNPDEVVAIGAAIQAGVLKGEVSDVLLLDVIPLTLGIETLGGVSTALITRNTTIP 419
Query: 525 TSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 584
TSKS+VFSTA D Q SVEI+VLQGER DN++LG F LDGI PAPRGVPQIEV FDID
Sbjct: 420 TSKSQVFSTAADNQPSVEIHVLQGERPMAADNRTLGRFMLDGILPAPRGVPQIEVTFDID 479
Query: 585 ANGILSVTA 593
ANGILSV A
Sbjct: 480 ANGILSVKA 488
|
|
| SGD|S000003806 SSC1 "Hsp70 family ATPase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
Identities = 284/486 (58%), Positives = 363/486 (74%)
Query: 110 VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAV 169
V V+GIDLGTTNSAVA MEG P I+ NAEG RTTPSVVA+TK G+RLVG AKRQAV
Sbjct: 28 VQGSVIGIDLGTTNSAVAIMEGKVPKIIENAEGSRTTPSVVAFTKEGERLVGIPAKRQAV 87
Query: 170 VNPENTFFSVKRFIGRKM--SEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISA 227
VNPENT F+ KR IGR+ +EV + KQV Y++V+ NG+ ++ A G+ ++ +I
Sbjct: 88 VNPENTLFATKRLIGRRFEDAEVQRDIKQVPYKIVKHSNGDAWVE--ARGQTYSPAQIGG 145
Query: 228 QVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL 287
VL K+ + A +L + AVVTVPAYFNDSQR ATKDAG+I GL VLR++NEPTAA+L
Sbjct: 146 FVLNKMKETAEAYLGKPVKNAVVTVPAYFNDSQRQATKDAGQIVGLNVLRVVNEPTAAAL 205
Query: 288 AYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347
AYG E+ +++ + VFDLGGGTFD+S+L++ +GVFEV ST+GDTHLGG+DFD ++ +
Sbjct: 206 AYGLEKSDSKVVAVFDLGGGTFDISILDIDNGVFEVKSTNGDTHLGGEDFDIYLLREIVS 265
Query: 348 NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTR 407
FK + G+ L ND+ A+QR+ EAAEKAK+ELSS I+LPFITA A GPKHI +R
Sbjct: 266 RFKTETGIDLENDRMAIQRIREAAEKAKIELSSTVSTEINLPFITADASGPKHINMKFSR 325
Query: 408 AKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN 467
A+FE L + L+ R PV+ AL+DA LS +D+ EV+LVGG +R+P V E VK + GKDP+
Sbjct: 326 AQFETLTAPLVKRTVDPVKKALKDAGLSTSDISEVLLVGGMSRMPKVVETVKSLFGKDPS 385
Query: 468 VTVNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSK 527
VNPDE +V+D++LLDVTPLS+G+ETLGGV T++IPRNTT+PT K
Sbjct: 386 KAVNPDEAVAIGAAVQGAVLSGEVTDVLLLDVTPLSLGIETLGGVFTRLIPRNTTIPTKK 445
Query: 528 SEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 587
S++FSTA GQTSVEI V QGERE VRDNK +G+F L GIPPAP+GVPQIEV FDIDA+G
Sbjct: 446 SQIFSTAAAGQTSVEIRVFQGERELVRDNKLIGNFTLAGIPPAPKGVPQIEVTFDIDADG 505
Query: 588 ILSVTA 593
I++V+A
Sbjct: 506 IINVSA 511
|
|
| TIGR_CMR|SPO_0043 SPO_0043 "chaperone protein DnaK" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1432 (509.1 bits), Expect = 1.3e-146, P = 1.3e-146
Identities = 285/484 (58%), Positives = 365/484 (75%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KV+GIDLGTTNS VA M+G +P ++ N+EG RTTPS+VA+T +RLVGQ AKRQAV NP
Sbjct: 3 KVIGIDLGTTNSCVAIMDGAQPKVIENSEGARTTPSIVAFTD-EERLVGQPAKRQAVTNP 61
Query: 173 ENTFFSVKRFIGRKM--SEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
NT F VKR IGR++ +EV + K V + +V NG+ ++ A G++++ +ISA +L
Sbjct: 62 SNTIFGVKRLIGRRVDDAEVTKDKKMVPFTIVNGGNGDAWVE--AKGEKYSPSQISAVIL 119
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
K+ + A +L +++T+AV+TVPAYFND+QR ATKDAG+IAGLEVLRIINEPTAA+LAYG
Sbjct: 120 GKMKETAESYLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 179
Query: 291 FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350
++KN++TI V+DLGGGTFDV++LE+ DG+FEV ST+GDT LGG+DFD R+V++LA+ FK
Sbjct: 180 LDKKNSQTIAVYDLGGGTFDVTILEIDDGLFEVKSTNGDTFLGGEDFDMRIVNYLADEFK 239
Query: 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADG-PKHIETTLTRAK 409
++ GV L DK ALQRL EAAEKAK+ELSS TQ I+ PFI+ A+G P H+ LTRAK
Sbjct: 240 KEHGVDLSGDKMALQRLKEAAEKAKIELSSTTQTEINQPFISMGANGQPLHLVMKLTRAK 299
Query: 410 FEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVT 469
E L DL+ + P + AL+DA +S +D+DEV+LVGG TR+P V E V K GK+P+
Sbjct: 300 LESLVGDLIKKSMDPCKAALKDAGISPSDVDEVVLVGGMTRMPKVFEEVTKFFGKEPHKG 359
Query: 470 VNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSE 529
VNPDE DV D+VLLDVTPLS+G+ETLGGV T++I RNTT+PT KS+
Sbjct: 360 VNPDEVVAMGAAIQAGVLQGDVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTIPTKKSQ 419
Query: 530 VFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 589
VFSTA D Q +V I V QGERE DNK LG F L+ IPPAPRG+PQIEV FDIDANGI+
Sbjct: 420 VFSTAEDNQNAVTIRVFQGEREMAADNKILGQFNLEDIPPAPRGMPQIEVTFDIDANGIV 479
Query: 590 SVTA 593
SV+A
Sbjct: 480 SVSA 483
|
|
| POMBASE|SPAC664.11 ssc1 "mitochondrial heat shock protein Hsp70" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 1420 (504.9 bits), Expect = 2.5e-145, P = 2.5e-145
Identities = 284/505 (56%), Positives = 366/505 (72%)
Query: 91 LNNEKNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVV 150
L+ + R N V V+GIDLGTT S +A MEG P ++ NAEG RTTPSVV
Sbjct: 29 LHGSRMTARWNSNASGNEKVKGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVV 88
Query: 151 AYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--VDDESKQVSYRVVRDENGN 208
A+TK G+RLVG AKRQAV+NPENTFF+ KR IGR+ E V + K+V Y++V NG+
Sbjct: 89 AFTKDGERLVGVSAKRQAVINPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD 148
Query: 209 VKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268
L+ A GK ++ +I +L K+ + AS +L + AVVTVPAYFNDSQR ATK AG
Sbjct: 149 AWLE--ARGKTYSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAG 206
Query: 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSG 328
IAGL VLR++NEPTAA+LAYG ++KN+ + VFDLGGGTFD+S+LE+ +GVFEV ST+G
Sbjct: 207 AIAGLNVLRVVNEPTAAALAYGLDKKNDAIVAVFDLGGGTFDISILELNNGVFEVRSTNG 266
Query: 329 DTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISL 388
DTHLGG+DFD +V + E FK++EG+ L D+ A+QR+ EAAEKAK ELSSL++ +ISL
Sbjct: 267 DTHLGGEDFDVALVRHIVETFKKNEGLDLSKDRLAVQRIREAAEKAKCELSSLSKTDISL 326
Query: 389 PFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGS 448
PFITA A GPKHI ++RA+FE+L L+ R P + AL+DA L ++++EVILVGG
Sbjct: 327 PFITADATGPKHINMEISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGM 386
Query: 449 TRIPAVQELVKKMTGKDPNVTVNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLET 508
TR+P V E VK + ++P +VNPDE V D+VLLDVTPLS+G+ET
Sbjct: 387 TRMPRVVETVKSIFKREPAKSVNPDEAVAIGAAIQGGVLSGHVKDLVLLDVTPLSLGIET 446
Query: 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIP 568
LGGV T++I RNTT+PT KS+VFSTA DGQT+VEI V QGERE VRDNK +G+F+L GI
Sbjct: 447 LGGVFTRLINRNTTIPTRKSQVFSTAADGQTAVEIRVFQGERELVRDNKLIGNFQLTGIA 506
Query: 569 PAPRGVPQIEVKFDIDANGILSVTA 593
PAP+G PQIEV FD+DA+GI++V+A
Sbjct: 507 PAPKGQPQIEVSFDVDADGIINVSA 531
|
|
| UNIPROTKB|P0A6Y8 dnaK [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 277/488 (56%), Positives = 368/488 (75%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT+ G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
+NT F++KR IGR+ EV + + ++++ +NG+ ++ G++ A +ISA+VL
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVL 120
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
+K+ A +L + +T+AV+TVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA+LAYG
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 291 FER-KNNETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345
++ N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++L
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTL 405
E FK+D+G+ L ND A+QRL EAAEKAK+ELSS Q +++LP+ITA A GPKH+ +
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 406 TRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD 465
TRAK E L DL++R +P++ AL+DA LS +D+D+VILVGG TR+P VQ+ V + GK+
Sbjct: 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 466 PNVTVNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPT 525
P VNPDE DV D++LLDVTPLS+G+ET+GGVMT +I +NTT+PT
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT 420
Query: 526 SKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 585
S+VFSTA D Q++V I+VLQGER+ DNKSLG F LDGI PAPRG+PQIEV FDIDA
Sbjct: 421 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480
Query: 586 NGILSVTA 593
+GIL V+A
Sbjct: 481 DGILHVSA 488
|
|
| UNIPROTKB|A1A766 dnaK "Chaperone protein DnaK" [Escherichia coli APEC O1 (taxid:405955)] | Back alignment and assigned GO terms |
|---|
Score = 1419 (504.6 bits), Expect = 3.2e-145, P = 3.2e-145
Identities = 277/488 (56%), Positives = 368/488 (75%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT+ G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
+NT F++KR IGR+ EV + + ++++ +NG+ ++ G++ A +ISA+VL
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVL 120
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
+K+ A +L + +T+AV+TVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA+LAYG
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 291 FER-KNNETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345
++ N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++L
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTL 405
E FK+D+G+ L ND A+QRL EAAEKAK+ELSS Q +++LP+ITA A GPKH+ +
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 406 TRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD 465
TRAK E L DL++R +P++ AL+DA LS +D+D+VILVGG TR+P VQ+ V + GK+
Sbjct: 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 466 PNVTVNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPT 525
P VNPDE DV D++LLDVTPLS+G+ET+GGVMT +I +NTT+PT
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT 420
Query: 526 SKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 585
S+VFSTA D Q++V I+VLQGER+ DNKSLG F LDGI PAPRG+PQIEV FDIDA
Sbjct: 421 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480
Query: 586 NGILSVTA 593
+GIL V+A
Sbjct: 481 DGILHVSA 488
|
|
| UNIPROTKB|O34241 dnaK "Chaperone protein DnaK" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1418 (504.2 bits), Expect = 4.0e-145, P = 4.0e-145
Identities = 278/488 (56%), Positives = 370/488 (75%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
K++GIDLGTTNS VA ++G KP ++ NAEG+RTTPSV+AYT G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYTD-GETLVGQPAKRQAVTNP 61
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
+NT F++KR IGR+ EV + K + Y++V+ +NG+ ++ A G++ AA ++SA+VL
Sbjct: 62 QNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVKADNGDAWVE--AKGQKMAAPQVSAEVL 119
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
+K+ A FL + +T AV+TVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA+LAYG
Sbjct: 120 KKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 179
Query: 291 FERKNNE-TILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345
+++ + TI V+DLGGGTFD+S++E+ G+ FEVLST+GDTHLGG+DFD R++++L
Sbjct: 180 LDKQGGDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINYL 239
Query: 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTL 405
+ FK+D+G+ L ND A+QRL EAAEKAK+ELSS Q +++LP+ITA A GPKH+ +
Sbjct: 240 VDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 299
Query: 406 TRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD 465
TRAK E L DL+ R +P++ AL DA LS ND+ +VILVGG TR+P VQ+ V + GK+
Sbjct: 300 TRAKLEALVEDLVQRSLEPLKVALADADLSVNDITDVILVGGQTRMPMVQKKVAEFFGKE 359
Query: 466 PNVTVNPDEXXXXXXXXXXXXXXXDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPT 525
P VNPDE +V D++LLDVTPLS+G+ET+GGVMTK+I +NTT+PT
Sbjct: 360 PRKDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIPT 419
Query: 526 SKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 585
++VFSTA D Q++V I+VLQGER+ NKSLG F L+GI PAPRG+PQIEV FD+DA
Sbjct: 420 KANQVFSTAEDNQSAVTIHVLQGERKQAMYNKSLGQFNLEGINPAPRGMPQIEVIFDLDA 479
Query: 586 NGILSVTA 593
+GIL V+A
Sbjct: 480 DGILHVSA 487
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q56235 | DNAK_THET8 | No assigned EC number | 0.6625 | 0.8060 | 0.7772 | yes | no |
| B5RPM1 | DNAK_BORRA | No assigned EC number | 0.6299 | 0.8111 | 0.7610 | yes | no |
| Q9TLT1 | DNAK_CYACA | No assigned EC number | 0.7282 | 0.8128 | 0.7799 | N/A | no |
| P69377 | DNAK_PORUM | No assigned EC number | 0.7463 | 0.8077 | 0.7725 | N/A | no |
| P69376 | DNAK_PORPU | No assigned EC number | 0.7463 | 0.8077 | 0.7725 | N/A | no |
| P22358 | DNAK2_SYNY3 | No assigned EC number | 0.7775 | 0.8111 | 0.7562 | N/A | no |
| Q85FW4 | DNAK_CYAME | No assigned EC number | 0.7588 | 0.8111 | 0.7924 | N/A | no |
| Q7V3T5 | DNAK2_PROMM | No assigned EC number | 0.7567 | 0.8094 | 0.7570 | yes | no |
| Q4G366 | DNAK_EMIHU | No assigned EC number | 0.7525 | 0.8094 | 0.7704 | N/A | no |
| Q72IK5 | DNAK_THET2 | No assigned EC number | 0.6645 | 0.8060 | 0.7772 | yes | no |
| P29215 | DNAK_GUITH | No assigned EC number | 0.7692 | 0.8111 | 0.7671 | yes | no |
| Q7UZG3 | DNAK2_PROMP | No assigned EC number | 0.7567 | 0.8094 | 0.7570 | yes | no |
| B5RM75 | DNAK_BORDL | No assigned EC number | 0.6299 | 0.8111 | 0.7610 | yes | no |
| Q8YW74 | DNAK2_NOSS1 | No assigned EC number | 0.7817 | 0.8094 | 0.7582 | yes | no |
| Q02028 | HSP7S_PEA | No assigned EC number | 0.8648 | 0.9224 | 0.7747 | N/A | no |
| Q7NDH1 | DNAK_GLOVI | No assigned EC number | 0.7713 | 0.8094 | 0.7523 | yes | no |
| A2BZ91 | DNAK_PROM5 | No assigned EC number | 0.7567 | 0.8094 | 0.7570 | yes | no |
| B3EHR1 | DNAK_CHLL2 | No assigned EC number | 0.6431 | 0.8060 | 0.7480 | yes | no |
| Q3B577 | DNAK_PELLD | No assigned EC number | 0.6535 | 0.8060 | 0.7503 | yes | no |
| Q1XDH2 | DNAK_PORYE | No assigned EC number | 0.7463 | 0.8094 | 0.7729 | N/A | no |
| Q08080 | HSP7S_SPIOL | No assigned EC number | 0.9389 | 0.7183 | 0.7111 | N/A | no |
| P30722 | DNAK_PAVLU | No assigned EC number | 0.7484 | 0.8094 | 0.7631 | N/A | no |
| P50021 | DNAK2_SYNE7 | No assigned EC number | 0.7676 | 0.8077 | 0.7555 | yes | no |
| B7J282 | DNAK_BORBZ | No assigned EC number | 0.6299 | 0.8111 | 0.7574 | yes | no |
| Q0SMZ0 | DNAK_BORAP | No assigned EC number | 0.6299 | 0.8111 | 0.7574 | yes | no |
| Q01PM8 | DNAK_SOLUE | No assigned EC number | 0.6424 | 0.8077 | 0.7531 | yes | no |
| Q7V9G2 | DNAK2_PROMA | No assigned EC number | 0.7567 | 0.8094 | 0.7582 | yes | no |
| Q37106 | DNAK_CYAPA | No assigned EC number | 0.7567 | 0.8077 | 0.7750 | N/A | no |
| Q6B8V2 | DNAK_GRATL | No assigned EC number | 0.7609 | 0.8111 | 0.7745 | N/A | no |
| A0T0H7 | DNAK_PHATC | No assigned EC number | 0.6923 | 0.8111 | 0.7846 | yes | no |
| Q06W39 | DNAK_PORHA | No assigned EC number | 0.7463 | 0.8094 | 0.7729 | N/A | no |
| Q9STW6 | HSP7F_ARATH | No assigned EC number | 0.8586 | 0.9308 | 0.7688 | yes | no |
| Q5N1J4 | DNAK2_SYNP6 | No assigned EC number | 0.7634 | 0.8077 | 0.7555 | yes | no |
| Q8DI58 | DNAK2_THEEB | No assigned EC number | 0.7941 | 0.8094 | 0.75 | yes | no |
| P0C922 | DNAK_BORBU | No assigned EC number | 0.6299 | 0.8111 | 0.7574 | yes | no |
| B3EKT9 | DNAK_CHLPB | No assigned EC number | 0.6480 | 0.8043 | 0.7429 | yes | no |
| Q826F6 | DNAK2_STRAW | No assigned EC number | 0.6618 | 0.8077 | 0.7567 | yes | no |
| Q7U3C4 | DNAK2_SYNPX | No assigned EC number | 0.7650 | 0.8094 | 0.7535 | yes | no |
| B4SDA0 | DNAK_PELPB | No assigned EC number | 0.6348 | 0.8060 | 0.7468 | yes | no |
| Q46I76 | DNAK_PROMT | No assigned EC number | 0.7546 | 0.8094 | 0.7619 | yes | no |
| B2S0M0 | DNAK_BORHD | No assigned EC number | 0.6299 | 0.8111 | 0.7610 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| eugene3.00860035 | hypothetical protein (705 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| estExt_Genewise1_v1.C_LG_II2716 | hypothetical protein; Essential component of the PAM complex, a complex required for the transl [...] (274 aa) | • | • | • | 0.590 | ||||||
| fgenesh4_pg.C_LG_V000902 | hypothetical protein (229 aa) | • | • | • | 0.557 | ||||||
| gw1.XI.2808.1 | hypothetical protein; Essential component of the PAM complex, a complex required for the transl [...] (244 aa) | • | • | • | • | 0.513 | |||||
| gw1.II.3317.1 | hypothetical protein (126 aa) | • | 0.503 | ||||||||
| gw1.41.327.1 | hypothetical protein (212 aa) | • | 0.503 | ||||||||
| fgenesh4_pg.C_scaffold_6803000001 | hypothetical protein (161 aa) | • | 0.503 | ||||||||
| eugene3.00190466 | hypothetical protein (110 aa) | • | 0.503 | ||||||||
| eugene3.00020187 | hypothetical protein (171 aa) | • | 0.503 | ||||||||
| estExt_fgenesh4_pm.C_1330037 | hypothetical protein (160 aa) | • | 0.503 | ||||||||
| estExt_fgenesh4_pg.C_LG_X1023 | hypothetical protein (175 aa) | • | 0.503 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 593 | |||
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 0.0 | |
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 0.0 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 1e-179 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-167 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-158 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-153 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-147 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-138 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-127 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-103 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-103 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 2e-99 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 3e-86 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 6e-84 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 2e-73 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 3e-68 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 4e-67 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 1e-65 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 1e-61 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 2e-42 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 1e-22 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 2e-14 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 1e-12 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 1e-10 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 3e-10 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 1e-09 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 1e-09 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 3e-09 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 5e-08 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 1e-07 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 1e-07 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 2e-07 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 9e-07 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 2e-06 | |
| cd10227 | 312 | cd10227, ParM_like, Plasmid segregation protein Pa | 6e-06 | |
| TIGR01312 | 481 | TIGR01312, XylB, D-xylulose kinase | 2e-04 | |
| cd07804 | 492 | cd07804, FGGY_XK_like_1, uncharacterized xylulose | 8e-04 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 1029 bits (2662), Expect = 0.0
Identities = 472/518 (91%), Positives = 491/518 (94%)
Query: 76 GRKPHFGLPNAAFLKLNNEKNNTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPT 135
GR F P AAFLK+ + N RR GP+RVV EKVVGIDLGTTNSAVAAMEGGKPT
Sbjct: 3 GRLAPFSTPTAAFLKMGKRRGNGARRRAGGPLRVVAEKVVGIDLGTTNSAVAAMEGGKPT 62
Query: 136 IVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESK 195
IVTNAEGQRTTPSVVAYTK GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD+ESK
Sbjct: 63 IVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESK 122
Query: 196 QVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAY 255
QVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDK+TKAV+TVPAY
Sbjct: 123 QVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAY 182
Query: 256 FNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLE 315
FNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE+K+NETILVFDLGGGTFDVSVLE
Sbjct: 183 FNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLE 242
Query: 316 VGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAK 375
VGDGVFEVLSTSGDTHLGGDDFDKR+VDWLA NFK+DEG+ LL DKQALQRLTEAAEKAK
Sbjct: 243 VGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAK 302
Query: 376 MELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLS 435
+ELSSLTQ +ISLPFITATADGPKHI+TTLTRAKFEELCSDLLDR K PVE ALRDAKLS
Sbjct: 303 IELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLS 362
Query: 436 FNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIV 495
F D+DEVILVGGSTRIPAVQELVKK+TGKDPNVTVNPDEVVALGAAVQ GVLAG+VSDIV
Sbjct: 363 FKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIV 422
Query: 496 LLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRD 555
LLDVTPLS+GLETLGGVMTKIIPRNTTLPTSKSEVFSTA DGQTSVEINVLQGEREFVRD
Sbjct: 423 LLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRD 482
Query: 556 NKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
NKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV+A
Sbjct: 483 NKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSA 520
|
Length = 673 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 969 bits (2507), Expect = 0.0
Identities = 331/482 (68%), Positives = 403/482 (83%), Gaps = 2/482 (0%)
Query: 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVN 171
K++GIDLGTTNS VA MEGG+P ++ NAEG RTTPSVVA+TK G+RLVGQ AKRQAV N
Sbjct: 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTN 61
Query: 172 PENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231
PENT FS+KR +GR+ EV + K V Y++V+ +NG+ ++ GK++ +EISA +L+
Sbjct: 62 PENTIFSIKRLMGRRDEEVQKDIKLVPYKIVKADNGDAWVE--IDGKKYTPQEISAMILQ 119
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 291
KL DA +L +K+T+AV+TVPAYFND+QR ATKDAG+IAGLEVLRIINEPTAA+LAYG
Sbjct: 120 KLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 179
Query: 292 ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
++K +E ILV+DLGGGTFDVS+LE+GDGVFEVLST+GDTHLGGDDFD+R++D+LA+ FK+
Sbjct: 180 DKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239
Query: 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411
+ G+ L DK ALQRL EAAEKAK+ELSS Q I+LPFITA A GPKH+E LTRAKFE
Sbjct: 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFE 299
Query: 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVN 471
EL DL++R +P + AL+DA LS +D+DEVILVGGSTR+PAVQELVK+ GK+PN VN
Sbjct: 300 ELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVN 359
Query: 472 PDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVF 531
PDEVVA+GAA+QGGVLAGDV D++LLDVTPLS+G+ETLGGVMTK+I RNTT+PT KS+VF
Sbjct: 360 PDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVF 419
Query: 532 STAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591
STA D Q +V I+VLQGERE DNKSLG F L GIPPAPRGVPQIEV FDIDANGI+ V
Sbjct: 420 STAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHV 479
Query: 592 TA 593
+A
Sbjct: 480 SA 481
|
Length = 627 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 933 bits (2414), Expect = 0.0
Identities = 382/481 (79%), Positives = 436/481 (90%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KVVGIDLGTTNS VA MEGGKPT++ NAEG RTTPS+VAYTK GD LVGQIAKRQAV+NP
Sbjct: 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
ENTF+SVKRFIGRK SE+ +E+KQVSY+V D NGN+K++CPA+ K F+ EEISAQVLRK
Sbjct: 63 ENTFYSVKRFIGRKFSEISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRK 122
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
LV+DASK+L + +T+AV+TVPAYFNDSQR ATKDAG+IAGLEVLRIINEPTAASLAYG +
Sbjct: 123 LVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLD 182
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+KNNETILVFDLGGGTFDVS+LEVGDGVFEVLSTSGDTHLGGDDFDK++V+WL + FK+
Sbjct: 183 KKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKK 242
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
EG+ L D+QALQRLTEAAEKAK+ELS+LTQ I+LPFITAT GPKHIE TLTRAKFEE
Sbjct: 243 EGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEE 302
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
LCSDL++R + PVE AL+DAKL +D+DEV+LVGGSTRIPA+QELVKK+ GK PN +VNP
Sbjct: 303 LCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNP 362
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAAVQ GVLAG+V DI+LLDVTPLS+G+ETLGGVMTKIIPRNTT+PT KSEVFS
Sbjct: 363 DEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFS 422
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
TA D QT+VEI+VLQGERE +DNKSLG+FRLDGIPPAPRGVPQIEV FDIDANGILSVT
Sbjct: 423 TAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVT 482
Query: 593 A 593
A
Sbjct: 483 A 483
|
Length = 621 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 856 bits (2213), Expect = 0.0
Identities = 339/482 (70%), Positives = 409/482 (84%), Gaps = 4/482 (0%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
K++GIDLGTTNS VA MEGG+P ++ NAEG RTTPSVVA+TK G+RLVGQ AKRQAV NP
Sbjct: 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
ENT +S+KRF+GR+ EV +E+K+V Y+VV D G+V++ GK++ +EISA +L+K
Sbjct: 61 ENTIYSIKRFMGRRFDEVTEEAKRVPYKVVGD-GGDVRVK--VDGKEYTPQEISAMILQK 117
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
L DA +L +K+T+AV+TVPAYFND+QR ATKDAG+IAGLEVLRIINEPTAA+LAYG +
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 293 R-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
+ K +E ILVFDLGGGTFDVS+LE+GDGVFEVLST+GDTHLGGDDFD+R++DWLA+ FK+
Sbjct: 178 KSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237
Query: 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411
+EG+ L DK ALQRL EAAEKAK+ELSS+ I+LPFITA A GPKH+E TLTRAKFE
Sbjct: 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFE 297
Query: 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVN 471
EL +DL++R K+PV AL+DA LS +D+DEVILVGGSTRIPAVQELVK GK+PN +VN
Sbjct: 298 ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVN 357
Query: 472 PDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVF 531
PDEVVA+GAA+QGGVL GDV D++LLDVTPLS+G+ETLGGVMTK+I RNTT+PT KS+VF
Sbjct: 358 PDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVF 417
Query: 532 STAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591
STA D Q +V+I+VLQGER DNKSLG F L GIPPAPRGVPQIEV FDIDANGIL V
Sbjct: 418 STAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477
Query: 592 TA 593
+A
Sbjct: 478 SA 479
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 839 bits (2170), Expect = 0.0
Identities = 326/481 (67%), Positives = 408/481 (84%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
++VGIDLGTTNS VA MEGGKP ++ NAEG RTTPSVV +TK G+ LVGQ+A+RQ V+NP
Sbjct: 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
+NTF+++KRFIGR+ E+D ESK+V Y + R+E GNV++ CP + ++FA EE+SA +LRK
Sbjct: 63 QNTFYNLKRFIGRRYDELDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRK 122
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
L DDAS++L + +T AV+TVPAYFNDSQR AT+DAGRIAGLEV RI+NEPTAA+LAYG +
Sbjct: 123 LADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLD 182
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
R +++T+LVFDLGGGTFDVS+LEVG+GVFEV +TSGDT LGG+DFDKR+VDWLAE F
Sbjct: 183 RSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEK 242
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
EG+ L D+QALQRLTEAAEKAK+ELS ++ +ISLPFITAT DGPKHIET L R +FE
Sbjct: 243 EGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFES 302
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
LC DLLDRL +PV+ AL+DA LS D+DEV+LVGGSTR+P VQ+LV+ + ++PN VNP
Sbjct: 303 LCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNP 362
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAA+Q G+LAG++ D++LLDVTPLS+GLET+GGVM K+IPRNTT+P +S+VFS
Sbjct: 363 DEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDVFS 422
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
T+ + Q+SVEI+V QGERE DNKSLG F+L GIPPAPRGVPQ++V FDIDANGIL V+
Sbjct: 423 TSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQVS 482
Query: 593 A 593
A
Sbjct: 483 A 483
|
Length = 668 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 820 bits (2120), Expect = 0.0
Identities = 328/485 (67%), Positives = 392/485 (80%), Gaps = 8/485 (1%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
V+GIDLGTTNS VA MEGG P ++ N EG RTTPSVVA+T +RLVGQ AKRQAV NP+
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTP-KERLVGQAAKRQAVTNPK 59
Query: 174 NTFFSVKRFIGRKMSE--VDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231
NT FSVKR IGRK S+ V + K V Y+VV+ NG+ ++ +G+ F E+ISA VL+
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 291
KL + A +L + +T AV+TVPAYFND+QR ATKDAGRIAGL VLRIINEPTAA+LAYG
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 292 ERKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350
++K+ +LVFDLGGGTFDVS+LE+GDGVFEVL+T+GDTHLGG+DFD R+VD E FK
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFK 239
Query: 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKF 410
+ G+ L D +ALQRL EAAEKAK+ELSS Q I+LPFITA ADG K + TLTRAKF
Sbjct: 240 KKYGIDLSKDPRALQRLREAAEKAKIELSS-NQTEINLPFITAMADG-KDVSGTLTRAKF 297
Query: 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTV 470
EELC+DL +R +PVE AL+DAKLS +++DEV+LVGGSTRIPAVQELVK+ GK+P+ V
Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGV 357
Query: 471 NPDEVVALGAAVQGGVLAG--DVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKS 528
NPDE VA+GAAVQ GVL+G DV D++LLDVTPLS+G+ETLGGVMTK+IPRNTT+PT KS
Sbjct: 358 NPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKS 417
Query: 529 EVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588
++FSTA D QT+VEI V QGERE DNK LGSF LDGIPPAPRGVPQIEV FDIDANGI
Sbjct: 418 QIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGI 477
Query: 589 LSVTA 593
L+V+A
Sbjct: 478 LTVSA 482
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 740 bits (1911), Expect = 0.0
Identities = 315/485 (64%), Positives = 387/485 (79%), Gaps = 8/485 (1%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
KV+GIDLGTTNS VA +EGGKP ++ N+EG RTTPS+V + K GDRLVGQ+AKRQAV N
Sbjct: 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVV--RDENGNVKLDCPAIGKQFAAEEISAQVL 230
ENT +S+KRFIGR+ + ++E +V Y V RD+ NV++ G+ + +EISA +L
Sbjct: 63 ENTVYSIKRFIGRRWDDTEEERSRVPYTCVKGRDDTVNVQIR----GRNYTPQEISAMIL 118
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
+KL DA +L + +T+AV+TVPAYF D+QR ATKDAG IAGLEVLRIINEPTAA+LAYG
Sbjct: 119 QKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYG 178
Query: 291 FERKNNE-TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENF 349
++++ E ILVFDLGGGTFDVS+L++GDGVFEV +T+G+ HLGGDDFD +VDWL ENF
Sbjct: 179 LDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENF 238
Query: 350 KRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAK 409
++ EG+ L DK ALQRL EAAEKAK+ELSS+ +I+LPFITA GPKH+E LTRAK
Sbjct: 239 QQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAK 298
Query: 410 FEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM-TGKDPNV 468
FEEL DL++ +P++ AL+DA L D+D VILVGGSTRIPAVQE ++K GK P+
Sbjct: 299 FEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDR 358
Query: 469 TVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKS 528
+VNPDE VALGAA+Q GVL G+V D++LLDVTPLS+G+ETLG V TKII RNTT+PTSKS
Sbjct: 359 SVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKS 418
Query: 529 EVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588
+VFSTA DGQTSVEI+VLQGER +DNKSLG F L GIPPAPRGVPQIEV F+ID NGI
Sbjct: 419 QVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGI 478
Query: 589 LSVTA 593
L V+A
Sbjct: 479 LKVSA 483
|
Length = 653 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 705 bits (1821), Expect = 0.0
Identities = 266/376 (70%), Positives = 323/376 (85%), Gaps = 1/376 (0%)
Query: 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVN 171
K++GIDLGTTNS VA MEGG+PT++ NAEG RTTPSVVA+TK G+RLVGQ AKRQAV N
Sbjct: 2 GKIIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTN 61
Query: 172 PENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231
PENT FS+KRF+GRK EV++E K V Y+VV DE GN K++ + GK + +EISA +L+
Sbjct: 62 PENTIFSIKRFMGRKFDEVEEERK-VPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQ 120
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 291
KL +DA +L +K+T+AV+TVPAYFNDSQR ATKDAG+IAGLEVLRIINEPTAA+LAYG
Sbjct: 121 KLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 180
Query: 292 ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
++K NE ILV+DLGGGTFDVS+LE+GDGVFEVL+T+GDTHLGGDDFD+R++DWL E FK+
Sbjct: 181 DKKGNEKILVYDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKK 240
Query: 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411
+EG+ L DK ALQRL EAAEKAK+ELSS+T+ I+LPFITA A GPKH+E TLTRAKFE
Sbjct: 241 EEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFE 300
Query: 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVN 471
EL DL++R +PV+ AL+DAKLS +D+DEVILVGGSTRIPAVQELVK++ GK+PN VN
Sbjct: 301 ELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVN 360
Query: 472 PDEVVALGAAVQGGVL 487
PDEVVA+GAA+QGGVL
Sbjct: 361 PDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 661 bits (1706), Expect = 0.0
Identities = 288/482 (59%), Positives = 373/482 (77%), Gaps = 4/482 (0%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
+VGIDLGTTNS VA MEG +P ++ N+EG RTTPSVVA+T+ G RLVG +AKRQAV NPE
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPE 102
Query: 174 NTFFSVKRFIGRKMSE--VDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231
NT F+ KR IGR+ E E K + Y++VR NG+ ++ A GK+++ +I A VL
Sbjct: 103 NTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIE--AQGKKYSPSQIGAFVLE 160
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 291
K+ + A +L K+ +AV+TVPAYFNDSQR ATKDAG+IAGL+VLRIINEPTAA+LA+G
Sbjct: 161 KMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGM 220
Query: 292 ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
++ + +TI V+DLGGGTFD+S+LE+ GVFEV +T+G+T LGG+DFD+R++++L FK+
Sbjct: 221 DKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKK 280
Query: 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411
+G+ L DK ALQRL EAAE AK+ELSS TQ I+LPFITA GPKH++ L+RAK E
Sbjct: 281 QQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLE 340
Query: 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVN 471
EL DLL + +P E ++DA + ++L++VILVGG TR+P V E VKK+ GK+P+ VN
Sbjct: 341 ELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVN 400
Query: 472 PDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVF 531
PDE VA+GAA+Q GVL G++ D++LLDVTPLS+G+ETLGGV T++I RNTT+PT KS+VF
Sbjct: 401 PDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVF 460
Query: 532 STAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591
STA D QT V I V QGERE DNK LG F L GIPPAPRGVPQIEV FD+DANGI+++
Sbjct: 461 STAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNI 520
Query: 592 TA 593
+A
Sbjct: 521 SA 522
|
Length = 663 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 652 bits (1683), Expect = 0.0
Identities = 303/482 (62%), Positives = 364/482 (75%), Gaps = 24/482 (4%)
Query: 113 KVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVN 171
K +GIDLGTTNS VA M GG P ++ NAEG+R TPSVVA++K G+ LVGQ AKRQAV N
Sbjct: 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDN 65
Query: 172 PENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231
PENT FS+KR IGR + + V++D GK++ EEISA +L
Sbjct: 66 PENTIFSIKRKIGRGSNGLKIS---------------VEVD----GKKYTPEEISAMILT 106
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 291
KL +DA +L +K+T AV+TVPAYFND+QR ATKDA RIAGL VLR+INEPTAA+LAYG
Sbjct: 107 KLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGL 166
Query: 292 ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
++ +T+LV+DLGGGTFDVS+LE+GDGVFEVL+T GD HLGGDDFD ++D+L FK
Sbjct: 167 DKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKG 226
Query: 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411
G+ L +DK ALQRL EAAEKAK+ELSS TQ +I+LP I + LTRAKFE
Sbjct: 227 KGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFE 282
Query: 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVN 471
EL DLL+R +PVE AL+DA L +D+D VILVGGSTRIPAVQELVK+ GK+P ++N
Sbjct: 283 ELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSIN 342
Query: 472 PDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVF 531
PDE VALGAA+Q VL+G+V D++LLDV PLS+G+ETLGGV T II RNTT+P KS+ F
Sbjct: 343 PDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEF 402
Query: 532 STAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591
STA DGQT+V I+V QGERE DNKSLG F LDGIPPAPRGVPQIEV FDIDANGIL+V
Sbjct: 403 STAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNV 462
Query: 592 TA 593
TA
Sbjct: 463 TA 464
|
Length = 579 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 542 bits (1398), Expect = 0.0
Identities = 221/377 (58%), Positives = 285/377 (75%), Gaps = 4/377 (1%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
V+GIDLGTTNS VA MEG P ++ NAEG RTTPSVVA+TK G+RLVG AKRQAV NP
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNP 62
Query: 173 ENTFFSVKRFIGRKM--SEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
ENT ++ KR IGR+ EV + K V Y++V+ NG+ ++ A GK+++ +I A VL
Sbjct: 63 ENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVE--AHGKKYSPSQIGAFVL 120
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
K+ + A +L + AV+TVPAYFNDSQR ATKDAG+IAGL VLR+INEPTAA+LAYG
Sbjct: 121 MKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYG 180
Query: 291 FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350
++K+++ I V+DLGGGTFD+S+LE+ GVFEV ST+GDT LGG+DFD ++ L + FK
Sbjct: 181 LDKKDDKVIAVYDLGGGTFDISILEIQKGVFEVKSTNGDTFLGGEDFDNALLRHLVKEFK 240
Query: 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKF 410
+++G+ L D ALQRL EAAEKAK+ELSS Q +I+LP+ITA A GPKH+ LTRAKF
Sbjct: 241 KEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKF 300
Query: 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTV 470
E L DL+ R +P + AL+DA +S +D+ EVILVGG TR+P VQE VK++ GK+P+ V
Sbjct: 301 ESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPSKGV 360
Query: 471 NPDEVVALGAAVQGGVL 487
NPDE VA+GAA+QGGVL
Sbjct: 361 NPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 548 bits (1414), Expect = 0.0
Identities = 272/486 (55%), Positives = 354/486 (72%), Gaps = 4/486 (0%)
Query: 110 VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAV 169
V V+G+DLGTT S VA M+G K ++ N+EG RTTPSVVA+ K ++LVG AKRQA+
Sbjct: 25 VQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAF-KGSEKLVGLAAKRQAI 83
Query: 170 VNPENTFFSVKRFIGRKM--SEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISA 227
NP++TF++VKR IGR+ + + K V Y++VR NG+ + GKQ++ +I A
Sbjct: 84 TNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQ-DGNGKQYSPSQIGA 142
Query: 228 QVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL 287
VL K+ + A FL K++ AVVT PAYFND+QR ATKDAG IAGL V+R++NEPTAA+L
Sbjct: 143 FVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAAL 202
Query: 288 AYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347
AYG ++ + I V+DLGGGTFD+SVLE+ GVFEV +T+GDTHLGG+DFD + D++ E
Sbjct: 203 AYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 348 NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTR 407
F++ G+ L ++ ALQR+ EAAEKAK ELSS + ++LPFITA ADG +HI+ ++R
Sbjct: 263 EFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISR 322
Query: 408 AKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN 467
+KFE + L++R P + ++DA + ++++V+LVGG TR+P V E VKK KDP
Sbjct: 323 SKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPF 382
Query: 468 VTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSK 527
VNPDE VALGAA GGVL GDV +VLLDVTPLS+G+ETLGGV T++IP+NTT+PT K
Sbjct: 383 RGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKK 442
Query: 528 SEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 587
S+ FSTA D QT V I V QGERE DN+ +G F L GIPPAPRGVPQIEV FDIDANG
Sbjct: 443 SQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANG 502
Query: 588 ILSVTA 593
I VTA
Sbjct: 503 ICHVTA 508
|
Length = 657 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 546 bits (1409), Expect = 0.0
Identities = 260/491 (52%), Positives = 335/491 (68%), Gaps = 17/491 (3%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPEN 174
+GIDLGTT S V + I+ N +G RTTPS VA+T +RL+G AK Q NPEN
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPEN 65
Query: 175 TFFSVKRFIGRKMSE--VDDESKQVSYRVVR--DENGNVKLDCPAIGKQFAAEEISAQVL 230
T F KR IGRK + V + K ++V D+ +++ K F EEIS+ VL
Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
+K+ + A +L ++ AVVTVPAYFNDSQR ATKDAG IAGL VLRIINEPTAA++AYG
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 291 FERKNNE--TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348
++K + +L+FDLGGGTFDVS+L + DG+FEV +T+GDTHLGG+DFD R+V++ ++
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQD 245
Query: 349 FKR-DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTR 407
FKR + G L ++++AL+RL E+AK LSS TQA I + + D T++R
Sbjct: 246 FKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY----NVTISR 301
Query: 408 AKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM-TGKDP 466
A+FEELC D +PVE L+DA + + EV+LVGGSTRIP VQ L+K GK+P
Sbjct: 302 ARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEP 361
Query: 467 NVTVNPDEVVALGAAVQGGVLAGD----VSDIVLLDVTPLSIGLETLGGVMTKIIPRNTT 522
++NPDE VA GAAVQ +L G+ V D++LLDVTPLS+GLET GGVMTK+I RNTT
Sbjct: 362 CKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIERNTT 421
Query: 523 LPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 582
+PT KS++F+T D Q V I V +GER +DN LG F LDGIPPAPRGVPQIEV FD
Sbjct: 422 IPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFD 481
Query: 583 IDANGILSVTA 593
IDANGIL+V+A
Sbjct: 482 IDANGILNVSA 492
|
Length = 653 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 538 bits (1388), Expect = 0.0
Identities = 218/481 (45%), Positives = 311/481 (64%), Gaps = 19/481 (3%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPEN 174
VGIDLGTTNS VA + G+ ++ + +G+ PSVV Y + G VG A+ A +P+N
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80
Query: 175 TFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 234
T SVKRF+GR ++++ + Y+ V ENG + K + E+SA++L+ L
Sbjct: 81 TISSVKRFMGRSLADIQQRYPHLPYQFVASENGMPLIRTAQGLK--SPVEVSAEILKALR 138
Query: 235 DDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERK 294
A + L ++ AV+TVPAYF+D+QR ATKDA R+AGL VLR++NEPTAA++AYG +
Sbjct: 139 QRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG 198
Query: 295 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEG 354
I V+DLGGGTFD+S+L + GVFEVL+T GD+ LGGDDFD + DW+ E G
Sbjct: 199 QEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILE----QAG 254
Query: 355 VVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELC 414
+ D + + L +AA AK LS +S+ A G +TR +F L
Sbjct: 255 LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSV----ALWQG------EITREQFNALI 304
Query: 415 SDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDE 474
+ L+ R ALRDA + +++ EV++VGGSTR+P V+E V + G+ P +++PD+
Sbjct: 305 APLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDK 364
Query: 475 VVALGAAVQGGVLAGDV--SDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
VVA+GAA+Q +LAG+ SD++LLDV PLS+GLET+GG++ KIIPRNTT+P ++++ F+
Sbjct: 365 VVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFT 424
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
T DGQT++ I+V+QGERE V D +SL F L GIPP G +I V F +DA+G+LSVT
Sbjct: 425 TFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVT 484
Query: 593 A 593
A
Sbjct: 485 A 485
|
Length = 616 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 519 bits (1338), Expect = e-179
Identities = 217/482 (45%), Positives = 309/482 (64%), Gaps = 15/482 (3%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
VGIDLGTTNS VA++ G P ++ +AEG+ PSVV Y K G VG+ A A +P+
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 174 NTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKL 233
NT SVKR +GR + ++ + YR V V+L + E+SA++L+KL
Sbjct: 61 NTISSVKRLMGRSIEDIK-TFSILPYRFVDGPGEMVRLR--TVQGTVTPVEVSAEILKKL 117
Query: 234 VDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFER 293
A + L + AV+TVPAYF+D+QR ATKDA R+AGL VLR++NEPTAA++AYG ++
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177
Query: 294 KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDE 353
+ V+DLGGGTFDVS+L++ GVFEVL+T GD+ LGGDDFD + W +
Sbjct: 178 ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKW----ILKQL 233
Query: 354 GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEEL 413
G+ + + + L +AA AK L+ + T DG K + LTR +FE L
Sbjct: 234 GISADLNPEDQRLLLQAARAAKEALTDAESVE-----VDFTLDG-KDFKGKLTRDEFEAL 287
Query: 414 CSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPD 473
L+ + ALRDA LS ++ V+LVGGSTR+P V+ V ++ G++P ++PD
Sbjct: 288 IQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPD 347
Query: 474 EVVALGAAVQGGVLAGDV--SDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVF 531
+VVALGAA+Q +LAG+ +D++LLDVTPLS+G+ET+GG++ KIIPRNT +P ++++ F
Sbjct: 348 QVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEF 407
Query: 532 STAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591
+T DGQT++ I+V+QGERE V D +SL F L GIPP G +I V F +DA+G+L+V
Sbjct: 408 TTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467
Query: 592 TA 593
+A
Sbjct: 468 SA 469
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 479 bits (1234), Expect = e-167
Identities = 204/376 (54%), Positives = 263/376 (69%), Gaps = 12/376 (3%)
Query: 115 VGIDLGTTNSAVAAM-EGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
+GIDLGTTNSAVA + GGKP I+ N EG RTTPSVV + G+ LVG+ AKRQA+ NPE
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 174 NTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLR 231
NT KR IGRK DD Q + +V+ + G + P GK+++ EE+SA +L+
Sbjct: 61 NTVGDFKRLIGRK---FDDPLVQSAKKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILK 117
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 291
KL +DA +L + +T+AV+TVPAYFND+QR ATK+A IAGL V+R+INEPTAA+LAYG
Sbjct: 118 KLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGL 177
Query: 292 ERKN--NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENF 349
++K+ TILVFDLGGGTFDVS++EV GVFEVL+T GD HLGGDDFD + D+LAE F
Sbjct: 178 DKKDEKGRTILVFDLGGGTFDVSLVEVEGGVFEVLATGGDNHLGGDDFDNALADYLAEKF 237
Query: 350 KRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAK 409
K G+ L D +AL+RL EAAEKAK+ LSS +A I+LP + +E LTR +
Sbjct: 238 KEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGL----GSGGDLEVELTREE 293
Query: 410 FEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVT 469
FEEL LL+R VE L DA L D+D V+LVGGS+RIP V+EL++++ GK P +
Sbjct: 294 FEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRS 353
Query: 470 VNPDEVVALGAAVQGG 485
++PDE VALGAA+
Sbjct: 354 IDPDEAVALGAAIYAA 369
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 457 bits (1179), Expect = e-158
Identities = 206/377 (54%), Positives = 259/377 (68%), Gaps = 10/377 (2%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
V+GIDLGTT S V + G+ I+ N +G R TPS VA+T G+RL+G AK QA NPE
Sbjct: 3 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTD-GERLIGDAAKNQATSNPE 61
Query: 174 NTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENG-NVKLDCPAIGKQFAAEEISAQVL 230
NT F VKR IGRK EV + K + Y+VV + +++D K F+ EEISA VL
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVL 121
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
K+ + A +L K+ AVVTVPAYFND+QR ATKDAG IAGL V+RIINEPTAA++AYG
Sbjct: 122 TKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYG 181
Query: 291 FERKNNET-ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENF 349
++K E ILVFDLGGGTFDVS+L + +GVFEVL+T+GDTHLGG+DFD+RV++ + F
Sbjct: 182 LDKKGGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEHFIKLF 241
Query: 350 KRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAK 409
K+ G + DK+ALQ+L EKAK LSS Q I I + DG E TLTRAK
Sbjct: 242 KKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIE---IESLFDGEDFSE-TLTRAK 297
Query: 410 FEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKK-MTGKDPNV 468
FEEL DL + KPV+ L DA L +D+DE++LVGGSTRIP VQ+L+K+ GK+P+
Sbjct: 298 FEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSR 357
Query: 469 TVNPDEVVALGAAVQGG 485
+NPDE VA GAAVQ G
Sbjct: 358 GINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 444 bits (1144), Expect = e-153
Identities = 198/379 (52%), Positives = 273/379 (72%), Gaps = 10/379 (2%)
Query: 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVN 171
++GIDLGTTNS VA ++ P I+ NAEG+RTTPS+V++TK LVG+ AKRQ ++
Sbjct: 2 STIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTK-TGILVGEAAKRQEALH 60
Query: 172 PENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 229
PENTFF+ KR IGR+ EV + K Y++V NG+ + GK+++ +I++ V
Sbjct: 61 PENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTN--GKKYSPSQIASFV 118
Query: 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
L+KL A +L ++ +AV+TVPAYFNDSQR ATKDAG +AGL+VLRIINEPTAA+LAY
Sbjct: 119 LKKLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAY 178
Query: 290 GFE-RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348
G + RK N+ I V+DLGGGTFD+S+L + DGVFEV +T+GDT LGG+DFD +V ++ +
Sbjct: 179 GIDKRKENKNIAVYDLGGGTFDISILNIEDGVFEVKATNGDTMLGGEDFDNAIVQYIIKE 238
Query: 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRA 408
FKR + L +K+A+QR+ EAAEKAK+ELSS ++ I LP++ DGPKH+ T+TR
Sbjct: 239 FKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYL----DGPKHLRITITRR 294
Query: 409 KFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV 468
+FE+L + R P + L+DA L D+DEVILVGG TR+P +Q +V+++ GK P+
Sbjct: 295 EFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSK 354
Query: 469 TVNPDEVVALGAAVQGGVL 487
+VNPDE VALGAA+QG +L
Sbjct: 355 SVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 429 bits (1105), Expect = e-147
Identities = 194/381 (50%), Positives = 255/381 (66%), Gaps = 13/381 (3%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPEN 174
+GIDLGTT S V + GK I+ N +G RTTPS VA+T +RL+G AK Q +NP N
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTN 60
Query: 175 TFFSVKRFIGRKMSE--VDDESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVL 230
T F KR IGRK S+ V + K ++VV + G + G K F EEIS+ VL
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVV-NGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
K+ + A +L +T AV+TVPAYFNDSQR ATKDAG IAGL VLRIINEPTAA++AYG
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 291 FERKNN--ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348
++K +L+FDLGGGTFDVS+L + DG+FEV +T+GDTHLGG+DFD R+V+ +
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRA 408
FKR + +K+AL+RL A E+AK LSS TQA+I + + D T++TRA
Sbjct: 240 FKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGID----FYTSITRA 295
Query: 409 KFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKK-MTGKDPN 467
+FEELC+DL +PVE LRDAKL + + +++LVGGSTRIP VQ+L++ GK+ N
Sbjct: 296 RFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFFNGKELN 355
Query: 468 VTVNPDEVVALGAAVQGGVLA 488
++NPDE VA GAAVQ +L+
Sbjct: 356 KSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 404 bits (1040), Expect = e-138
Identities = 174/372 (46%), Positives = 245/372 (65%), Gaps = 34/372 (9%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPEN 174
+GIDLGTTNS VA + GK ++ NA G+ TPSVV+ + G+ LVG+ A+ + + +P+
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 175 TFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 234
T S KRF+G K+ +L ++F AEE+S+ VLR L
Sbjct: 61 TAASFKRFMG--------TDKKY------------RLG----KREFRAEELSSLVLRSLK 96
Query: 235 DDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF-ER 293
+DA +L + +T+AV++VPAYFND QR ATK AG +AGL+V R+INEPTAA+LAYG ++
Sbjct: 97 EDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK 156
Query: 294 KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDE 353
LVFDLGGGTFDVSVLE+ DGV EV +++GD +LGG+DF + + + + D
Sbjct: 157 DEETKFLVFDLGGGTFDVSVLELFDGVMEVRASAGDNYLGGEDFTRALAEAFLKKHGLDF 216
Query: 354 GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEEL 413
+ D L RL AAE+AK LS +A +S+ +G + +E TLTR +FEE+
Sbjct: 217 EKL---DPSELARLLRAAERAKRALSDQEEAEMSV-----RIEG-EELEYTLTREEFEEI 267
Query: 414 CSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPD 473
C LL+RL++P+E ALRDA+L +D+DE+ILVGG+TR+P V++LV ++ G+ P V +NPD
Sbjct: 268 CQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNPD 327
Query: 474 EVVALGAAVQGG 485
EVVALGAA+Q G
Sbjct: 328 EVVALGAAIQAG 339
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 376 bits (969), Expect = e-127
Identities = 162/371 (43%), Positives = 224/371 (60%), Gaps = 18/371 (4%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
+GIDLGTTNS VA++ GK I+ + G+ PSVV Y G VG A + A+ +P+
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYGD-GGISVGHDALKLAISDPK 60
Query: 174 NTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKL 233
NT SVKR +G+ + ++ + +NG + L G E+SA++L+ L
Sbjct: 61 NTISSVKRLMGKSIEDIKKSFPYLPILE--GKNGGIILFHTQQGT-VTPVEVSAEILKAL 117
Query: 234 VDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFER 293
+ A K L +I AV+TVPAYF+D+QR ATKDA R+AGL VLR++NEPTAA+LAYG ++
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 294 KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDE 353
K V+DLGGGTFDVS+L++ GVFEVL+T GD+ LGGDDFD+ + + L + +
Sbjct: 178 KKEGIYAVYDLGGGTFDVSILKLHKGVFEVLATGGDSALGGDDFDQLLAELLLKKYGLKS 237
Query: 354 GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEEL 413
L++D+ L A KAK LS + + + + T+TR +FE+L
Sbjct: 238 ---LISDED-QAELLLIARKAKEALSGAEEVEVRG----------QDFKCTITREEFEKL 283
Query: 414 CSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPD 473
L+ + + ALRDA LS D+ VILVGGSTRIP VQE V K G+ P +NPD
Sbjct: 284 IDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPD 343
Query: 474 EVVALGAAVQG 484
EVVA+GAA+Q
Sbjct: 344 EVVAIGAALQA 354
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 323 bits (830), Expect = e-103
Identities = 176/486 (36%), Positives = 258/486 (53%), Gaps = 45/486 (9%)
Query: 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVN 171
+ VGID GTTNS +A K ++ + + + P+ + +T +
Sbjct: 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-----------FTIG 67
Query: 172 PENTFFSVKRFIGRKMSEVDDESKQVS-YRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
S+KR G+ + E+ + S + D N + +L KQ EI+A++
Sbjct: 68 NNKGLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSS-ELKLNFANKQLRIPEIAAEIF 126
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
L + A + L ITKAV+TVPA+FND+ R A +IAG EVLR+I EPTAA+ AYG
Sbjct: 127 IYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYG 186
Query: 291 FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350
+ LV+DLGGGTFDVS+L + +G+F+V++T+GD LGG+D D + +L F
Sbjct: 187 LNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKFD 246
Query: 351 RDEGVVLLNDKQALQRLTEAAEKAKMELS---SLTQANISLPFITATADGPKHIETTLTR 407
L N LQ A+KAK L+ S NIS + +
Sbjct: 247 ------LPNSIDTLQ----LAKKAKETLTYKDSFNNDNIS-----------------INK 279
Query: 408 AKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN 467
E+L L++R + L A ++D VILVGG+TRIP +++ + K D
Sbjct: 280 QTLEQLILPLVERTINIAQECLEQAGNP--NIDGVILVGGATRIPLIKDELYKAFKVDIL 337
Query: 468 VTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSK 527
++PD+ V GAA+Q L ++ +L+DV PLS+G+E GG++ KII RNT +P S
Sbjct: 338 SDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISV 397
Query: 528 SEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANG 587
+ F+T D QT ++ ++LQGERE D +SL F L G+PP G + EV F IDA+G
Sbjct: 398 VKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADG 457
Query: 588 ILSVTA 593
ILSV+A
Sbjct: 458 ILSVSA 463
|
Length = 595 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 316 bits (812), Expect = e-103
Identities = 157/385 (40%), Positives = 226/385 (58%), Gaps = 17/385 (4%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT-KIGDRLVGQIAKRQAVVNP 172
VVGID G NS VA G +V N R TPS+V++ K RL+G+ AK QA+ N
Sbjct: 2 VVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEK--QRLIGEAAKNQAISNF 59
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNV--KLDCPAIGKQFAAEEISAQ 228
+NT + KR IGRK EV E K + ++VV +G V K++ K F+ E++ A
Sbjct: 60 KNTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAM 119
Query: 229 VLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLA 288
+L KL + A K L K+T V++VP+YF D+QR A DA +IAGL LR++NE TA +LA
Sbjct: 120 LLTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALA 179
Query: 289 YGFERKN-----NETILVF-DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342
YG + + + F D+G + VS++ G +VLST+ D +LGG DFD+ +
Sbjct: 180 YGIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKLKVLSTAFDRNLGGRDFDEALF 239
Query: 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIE 402
+ A+ FK + +L++ +A RL A EK K LS AN P K +
Sbjct: 240 EHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLS----ANTEAPLNIECLMEDKDVS 295
Query: 403 TTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT 462
+ R +FEELC+ LL+R+++P+E AL +A L+ D+ V +VGGSTRIPAV+EL+ K+
Sbjct: 296 GKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF 355
Query: 463 GKDPNVTVNPDEVVALGAAVQGGVL 487
GK+ + T+N DE VA G A+Q +L
Sbjct: 356 GKELSTTLNADEAVARGCALQCAML 380
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 308 bits (791), Expect = 2e-99
Identities = 151/385 (39%), Positives = 229/385 (59%), Gaps = 10/385 (2%)
Query: 113 KVVGIDLGTTNSAVAAMEG--GKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVV 170
K++GIDLGTT S+V + G+ I+ + G+++ PSVVA+T G LVG A QA
Sbjct: 21 KIIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTP-GTVLVGYKAVEQAEH 79
Query: 171 NPENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAA--EEIS 226
NP+NT + KRFIG+ + E++ ES + ++V + + EEI
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 227 AQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAAS 286
++++ KL A K+L + KAV++VPA F++ QR AT A +AGLEVLR+INEPTAA+
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 287 LAYGFERKNN-ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345
LAYG +K + +LV DLGGGT DVS+L G+F + +G+ LGG DF++R++ +L
Sbjct: 200 LAYGLHKKQDVFNVLVVDLGGGTLDVSLLNKQGGMFLTRAMAGNNRLGGQDFNQRLLQYL 259
Query: 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPK-HIETT 404
+ G V ++K+ +QRL +A E AK+ L+ ISL + E
Sbjct: 260 YQKIYEKYGKVP-DNKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYE 318
Query: 405 LTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK 464
LTR +FE L DL ++ P+E L + L ++DE++LVGGSTRIP +++++ + GK
Sbjct: 319 LTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGK 378
Query: 465 DPNVTVNPDEVVALGAAVQGGVLAG 489
DPN +V+P+ V G A+Q G++ G
Sbjct: 379 DPNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 272 bits (698), Expect = 3e-86
Identities = 131/378 (34%), Positives = 217/378 (57%), Gaps = 12/378 (3%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPEN 174
+G+ G T++ +A + G+ +V N G R TP+VVA+T +VG AK+ + N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTE-VIVGLAAKQGRIRNAAN 61
Query: 175 TFFSVKRFIGRKMSE--VDDESKQVSYRVV-RDENGNVKLDCPAIGKQFAAEEISAQVLR 231
T K+ +GR S+ E + S +++ +D ++ K + +E++ + +
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 291
K+ + A L V+TVP YF++ Q+ A ++A AG VLRII+EP+AA+LAYG
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 292 ---ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348
+LV+ LGG + DV++L V G++ VL+TS D +LGG+ F + + +LA
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRVNSGMYRVLATSTDDNLGGESFTETLSQYLANE 241
Query: 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRA 408
FKR + + +A+ +L AAE AK LS+L AN F+ + +G + +++RA
Sbjct: 242 FKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANC---FVESLYEG-IDFQCSVSRA 297
Query: 409 KFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM-TGKDPN 467
+FE LCS L + +P+E L A L+ D+++V+L GGS+RIP +Q+L+K + +
Sbjct: 298 RFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLFPSVEVL 357
Query: 468 VTVNPDEVVALGAAVQGG 485
+++PDEV+A+GAA Q G
Sbjct: 358 NSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 6e-84
Identities = 135/393 (34%), Positives = 206/393 (52%), Gaps = 29/393 (7%)
Query: 115 VGIDLGTTNSAVAAMEGGKP-TIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
+GIDLG+ VA ++ G P IV N E +R TPS VA+ K G+RL G A A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAF-KGGERLFGSDASSLAARFPQ 59
Query: 174 NTFFSVKRFIGRKMS--EVDDESKQ--VSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 229
+ +K +G+ V + + Y VV + G V G++++ EE+ A +
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISD-GEEYSVEELVAMI 118
Query: 230 LRKLVDDASKFLND-KITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLA 288
L A + + + V+TVP YF +QR A DA +AGL VL ++N+ TAA+L
Sbjct: 119 LNYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALN 178
Query: 289 YGFERK----NNETILVFDLGGGTFDVSVLEV----------GDGVFEVLSTSGDTHLGG 334
Y +R+ + +L +D+G G+ +V+E EVL D LGG
Sbjct: 179 YALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGG 238
Query: 335 DDFDKRVVDWLAENF--KRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFIT 392
+FD R+ D LA+ F K V + + +A+ +L + A +AK LS+ ++A +S I
Sbjct: 239 REFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVS---IE 295
Query: 393 ATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIP 452
+ D +T +TRA+FEELC+DL +R P++ AL A L+ D+D V L+GG+TR+P
Sbjct: 296 SLYDD-IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVP 354
Query: 453 AVQELVKKMTGKDP-NVTVNPDEVVALGAAVQG 484
VQE + + GK +N DE A+GAA
Sbjct: 355 KVQEELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 239 bits (611), Expect = 2e-73
Identities = 136/386 (35%), Positives = 212/386 (54%), Gaps = 15/386 (3%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
VVG D+G + +A G V N R TPSV+++ +R +G AK Q + +
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGS-KNRTIGVAAKNQQITHAN 60
Query: 174 NTFFSVKRFIGRKMSE--VDDESKQVSYRVVRDENGNVKLDCPAIGKQ--FAAEEISAQV 229
NT + KRF GR ++ V E + +SY +V +NG V + +G++ F+ E+I+A +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
L KL + A L +T V++VP++F D++R + DA +I GL LR++N+ TA +L Y
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 290 GFERKN------NETILVF-DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342
G +++ I+VF D+G F VS G +VL T+ D LGG +FD+++V
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKLV 240
Query: 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIE 402
+ FK + + +AL RL + EK K +SS + LP K +
Sbjct: 241 EHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSS---NSTDLPLNIECFMNDKDVS 297
Query: 403 TTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT 462
+ R++FEELC+DLL R++ P+ + L L D+ V +VGG+TRIPAV+E + K
Sbjct: 298 GKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFF 357
Query: 463 GKDPNVTVNPDEVVALGAAVQGGVLA 488
GKD + T+N DE VA G A+Q +L+
Sbjct: 358 GKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 226 bits (576), Expect = 3e-68
Identities = 137/387 (35%), Positives = 210/387 (54%), Gaps = 17/387 (4%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
VVGIDLG + VA G + N R TP+ +++ +R +G AK Q + N +
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGP-KNRSIGAAAKSQVISNAK 60
Query: 174 NTFFSVKRFIGRKMSE--VDDESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQV 229
NT KRF GR S+ V E ++Y +V+ G+ + + + F E+++A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
L KL + A L + VV+VP ++ D++R + DA +IAGL LR++NE TA +LAY
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 290 GFERKN------NETILVF-DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342
G +++ +VF D+G + VSV G +VL+T+ DT LGG FD+ +V
Sbjct: 181 GIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANIS-LPFITATADGPKHI 401
++ E F + + + + +AL RL++ EK L L AN S LP +
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEK----LKKLMSANASDLPLNIECFMNDIDV 296
Query: 402 ETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM 461
T+ R KF E+C DLL R++ P+ + L AKL D+ V +VGG+TRIPAV+E + K
Sbjct: 297 SGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKF 356
Query: 462 TGKDPNVTVNPDEVVALGAAVQGGVLA 488
GK+ + T+N DE VA G A+Q +L+
Sbjct: 357 FGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 222 bits (567), Expect = 4e-67
Identities = 123/379 (32%), Positives = 200/379 (52%), Gaps = 16/379 (4%)
Query: 116 GIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENT 175
G+DLG NS +A IV N R+TPSVV + +R +G+ K + N +NT
Sbjct: 2 GLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGF-GPKNRYLGETGKNKQTSNIKNT 60
Query: 176 FFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQ--FAAEEISAQVLR 231
++KR IG + + ESK + ++V ++ + G++ F+A +++A +
Sbjct: 61 VANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFID 120
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG- 290
K+ D + IT + VP ++ + QR DA RIAGL +RI+N+ TAA ++YG
Sbjct: 121 KVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGI 180
Query: 291 FERK---NNET---ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDW 344
F+ E + D+G ++ S++ G +VL T+ D H GG DFD + +
Sbjct: 181 FKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQLKVLGTACDKHFGGRDFDLAITEH 240
Query: 345 LAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETT 404
A+ FK + + + +A R+ AAEK K LS+ T A S+ + D + +
Sbjct: 241 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVD----VSSQ 296
Query: 405 LTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK 464
L+R + EEL LL+R+ +PV AL AKLS ++D V ++GG+TRIP +++ + + GK
Sbjct: 297 LSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGK 356
Query: 465 DPNVTVNPDEVVALGAAVQ 483
+ T+N DE +A GAA
Sbjct: 357 PLSTTLNQDEAIAKGAAFI 375
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 219 bits (559), Expect = 1e-65
Identities = 122/392 (31%), Positives = 196/392 (50%), Gaps = 29/392 (7%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
V+GI+ G T S++A + GK ++ N +G+R PS ++Y G AK Q + N +
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHG-EQEYHGNQAKAQLIRNAK 60
Query: 174 NTFFSVKRFIGRKMSEVDDESKQVSYRV---VRDENGNVKLDCPAIGKQ--FAAEEISAQ 228
NT + + +G+ SE+D + + V V D G V+ + K+ E++ +
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 229 VLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLA 288
LR+L + A FL K+ AV++VP +F+D Q A A AGL VL++I EP AA LA
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 289 YG-----FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343
Y + + ++V D GG DVSV+ V G++ +L+T+ D LGGD D +V
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGGLYTILATAHDPGLGGDTLDDALVK 240
Query: 344 WLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIET 403
A+ F + + +AL +L +E K LS+ T A S + + A+G +
Sbjct: 241 HFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCS---VESLAEGIDF-HS 296
Query: 404 TLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG 463
++ R +FE L S + + V +A+ A L D+DEV+LVGG+ P + ++
Sbjct: 297 SINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASN---LSY 353
Query: 464 KDPNVT-----------VNPDEVVALGAAVQG 484
P T ++P E+VA G A+Q
Sbjct: 354 LFPETTTITAPITVSKALDPSELVARGCAIQA 385
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 208 bits (530), Expect = 1e-61
Identities = 125/387 (32%), Positives = 205/387 (52%), Gaps = 17/387 (4%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
VVGIDLG N +A G + N R TP+ ++ R +G AK Q V N
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGS-RTRAIGNAAKSQIVTNVR 60
Query: 174 NTFFSVKRFIGRKMSE--VDDESKQVSYRVVRDENGNVKLDCPAIGKQ--FAAEEISAQV 229
NT K+ GR + V E ++ Y + + NG+V + + ++ FA E+++ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
L KL + + L + V+++P++F D++R + A ++AGL LR++NE TA +LAY
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 290 GFERKN-------NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342
G +++ ++ D+G + VSV G +VL+T+ D +LGG +FD+ +V
Sbjct: 181 GIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANIS-LPFITATADGPKHI 401
D+ + FK + + + +AL RL + EK L L AN S LP +
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEK----LKKLMSANASDLPLNIECFMNDLDV 296
Query: 402 ETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM 461
+ + RA+FE+LC+ LL R++ P++ + A L D+ + +VGG+TRIPAV+E +
Sbjct: 297 SSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSF 356
Query: 462 TGKDPNVTVNPDEVVALGAAVQGGVLA 488
KD + T+N DE VA G A+Q +L+
Sbjct: 357 FLKDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 157 bits (399), Expect = 2e-42
Identities = 108/441 (24%), Positives = 167/441 (37%), Gaps = 102/441 (23%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR-----LVGQIAKRQAV 169
+GID GT+NSAVA G+P +V G T PS + + L G+ A +
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 170 VNPENTFF--SVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISA 227
P S+K F+G S + G++ E++ A
Sbjct: 61 EGPGEGRLMRSLKSFLG---------SSLFRETRIF-------------GRRLTFEDLVA 98
Query: 228 QVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQ----RTATKD---AGRIAGLEVLRIIN 280
+ L +L A L +I + V+ P +F A A R AG + +
Sbjct: 99 RFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQY 158
Query: 281 EPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVF-------EVLSTSGDTHLG 333
EP AA+L Y E +LV D+GGGT D S++ +G ++L+ SG +G
Sbjct: 159 EPIAAALDYEQRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSG-VRIG 217
Query: 334 GDDFDKRVVD------------------------WLAENFKRDEGVVLLNDKQA------ 363
G DFD+R+ + + L +
Sbjct: 218 GTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELRE 277
Query: 364 -------------LQRLTE---------AAEKAKMELSSLTQANISLPFITATADGPKHI 401
L + E A E AK+ LSS + I L F+ +
Sbjct: 278 LARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------EVGL 331
Query: 402 ETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM 461
E +TRA+FE + L+R++ V+ AL A +S + +D V L GGS+ +PAV++
Sbjct: 332 EAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAAR 391
Query: 462 TGKDPNVTVNPDEVVALGAAV 482
V + VA G A+
Sbjct: 392 FPAARIVEGDAFGSVASGLAL 412
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-22
Identities = 96/423 (22%), Positives = 153/423 (36%), Gaps = 73/423 (17%)
Query: 114 VVGIDLGTTNS--AVAAMEGGKPTI--VTNAEGQRT-----TPSVVAYTKIGD-RLVG-- 161
VVGID GTT S A A ++ P I +T G P+ + Y G G
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYE 61
Query: 162 -QIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQF 220
+ + E F + F K+ D + +
Sbjct: 62 AEREYAELEAEDEGWLF-FEWF---KLLL--DPDALKLQGDDKL---------KPLPPGK 106
Query: 221 AAEEISAQVLRKLVDDASKFLNDKITKA---------VVTVPAYFNDSQRTATKDAGRIA 271
A ++ A LR L + A + L V+TVPA ++D+ + A ++A A
Sbjct: 107 TAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKA 166
Query: 272 GL-------EVLRIINEPTAASLA------YGFERKNNETILVFDLGGGTFDVSVLEV-- 316
GL + L I+ EP AA+L K + LV D GGGT D++V EV
Sbjct: 167 GLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTS 226
Query: 317 -GDGVFEVLST-SGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKA 374
+ L+ SG G D+ + L E + L E
Sbjct: 227 VEPLRLKELAAGSGGLC-GSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFFETI 285
Query: 375 KMELSSLT-QANISLPFITAT-ADGPKH-I---ETTLTRAK----FEELCSDLLDRLKKP 424
K NI LP A P+ I E ++ F+ + +++D +++
Sbjct: 286 KRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQ 345
Query: 425 VETALRDAKLSFNDLDEVILVGGSTRIPAVQE-LVKKMTGKDPNVTV--NPDEVVALGAA 481
+E A + K+ + + LVGG P ++ L ++ + + V +P V GA
Sbjct: 346 LEQAEKGDKVKY-----IFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVVRGAV 400
Query: 482 VQG 484
+ G
Sbjct: 401 LFG 403
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 74.4 bits (184), Expect = 2e-14
Identities = 93/377 (24%), Positives = 160/377 (42%), Gaps = 74/377 (19%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRL--VGQIAKRQAVVNP 172
+GIDLGT N+ V G IV N PSVVA ++ VG+ AK P
Sbjct: 1 IGIDLGTANTLVYVKGKG---IVLNE------PSVVAIDTKTGKILAVGEEAKEMLGRTP 51
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRD-ENGNVKLDCPAIGKQFAAEEISAQVLR 231
N V+R ++G + A E + +LR
Sbjct: 52 GN------------------------IEVIRPLKDGVI-----------ADFEATEAMLR 76
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 291
+ + V+ VP+ + +R A DA AG + +I EP AA++ G
Sbjct: 77 YFIKKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAAAIGAGL 136
Query: 292 ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
+ + +V D+GGGT +++V+ +G G+ V+S S +GGDDFD+ ++ ++ +
Sbjct: 137 DIFEPKGNMVVDIGGGTTEIAVISLG-GI--VVSKS--IRVGGDDFDEAIIRYVRRKYN- 190
Query: 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITA---TADG-PKHIETTLTR 407
+L+ ++ AE+ K+E+ S + G P+ +E +T
Sbjct: 191 ----LLIGERT--------AEEIKIEIGSAYPLDEEETMEVKGRDLVTGLPRTVE--VTS 236
Query: 408 AKFEELCSDLLDRLKKPVETALRDA--KLSFNDLDE-VILVGGSTRIPAVQELVKKMTGK 464
+ E + LD + + +++ L +L+ + LD ++L GG + + EL+ + TG
Sbjct: 237 EEVREALKEPLDEIVEAIKSVLEKTPPELAADILDRGIVLTGGGALLRGLDELISEETGL 296
Query: 465 DPNVTVNPDEVVALGAA 481
V +P VA GA
Sbjct: 297 PVRVAEDPLTCVAKGAG 313
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 94/391 (24%), Positives = 151/391 (38%), Gaps = 80/391 (20%)
Query: 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVN 171
+GIDLGT N+ V G IV N PSVVA G K V
Sbjct: 6 SNDIGIDLGTANTLVYVKGKG---IVLN------EPSVVAIESEGK------TKVVLAVG 50
Query: 172 PENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231
E K+ +GR + V+ R ++D G I E + ++
Sbjct: 51 EE-----AKQMLGRTPGNI------VAIRPMKD--G-------VIADFEVTELMLKYFIK 90
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG- 290
K+ + S F +I V+ VP+ D +R A K+A AG + +I EP AA A G
Sbjct: 91 KVHKNGSSFPKPRI---VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAA--AIGA 145
Query: 291 ----FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLA 346
E + +V D+GGGT +V+V+ +G V +S +GGD D+ ++ ++
Sbjct: 146 GLPIMEPTGS---MVVDIGGGTTEVAVISLGGIV-----SSSSVRVGGDKMDEAIIVYVR 197
Query: 347 ENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQAN------ISLPFITATADGPKH 400
+ + +L+ + AEK K+E+ S + + PK
Sbjct: 198 KKYN-----LLIGE--------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKT 244
Query: 401 IETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSF-NDLDE--VILVGGSTRIPAVQEL 457
I E + L+ + + + L D+ E ++L GG + + L
Sbjct: 245 ITINSEEI--AEALEEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRL 302
Query: 458 VKKMTGKDPNVTVNPDEVVALGAAVQGGVLA 488
+ + TG + +P VA G G L
Sbjct: 303 LSEETGVPVIIADDPLTCVAKGT---GKALE 330
|
Length = 342 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 1e-10
Identities = 90/378 (23%), Positives = 157/378 (41%), Gaps = 78/378 (20%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRL--VGQIAKRQAVVNP 172
+GIDLGT N+ V G IV N PSVVA ++ VG AK+ P
Sbjct: 4 IGIDLGTANTLVYVKGKG---IVLN------EPSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
N V+ R ++D G I E + ++K
Sbjct: 55 GNI---------------------VAVRPLKD--G-------VIADFEVTEAMLKYFIKK 84
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG-- 290
+ ++ V+ VP+ + +R A K+A + AG + +I EP AA++ G
Sbjct: 85 VHG-RRSLSKPRV---VICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGLP 140
Query: 291 -FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENF 349
E N +V D+GGGT +V+V+ +G V TS + GD+ D+ ++ ++ + +
Sbjct: 141 VEEPTGN---MVVDIGGGTTEVAVISLGGIV-----TSKSVRVAGDEMDEAIIKYIRKKY 192
Query: 350 KRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATAD---G-PKHIETTL 405
+L+ ++ AE+ K+E+ S D G PK IE +
Sbjct: 193 N-----LLIGER--------TAERIKIEIGSAYPTEEEEKMEIRGRDLVTGLPKTIE--I 237
Query: 406 TRAKFEELCSDLLDRLKKPVETALRD--AKLSFNDLDE-VILVGGSTRIPAVQELVKKMT 462
+ + E + + + + V+ L +L+ + +D ++L GG + + +L+ T
Sbjct: 238 SSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALLRGLDKLLSDET 297
Query: 463 GKDPNVTVNPDEVVALGA 480
G ++ +P VALG
Sbjct: 298 GLPVHIAEDPLTCVALGT 315
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 90/374 (24%), Positives = 152/374 (40%), Gaps = 70/374 (18%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPEN 174
+GIDLGT N V + G I+ N PSVVA V K + E
Sbjct: 7 IGIDLGTANILVYSKNKG---IILNE------PSVVA--------VDTETKAVLAIGTE- 48
Query: 175 TFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 234
K IG+ ++ V+ R ++D A +++ +L++++
Sbjct: 49 ----AKNMIGKTPGKI------VAVRPMKD-------------GVIADYDMTTDLLKQIM 85
Query: 235 DDASKFLNDKITK--AVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
A K + K VV P+ +R A DA + G + + +I EP AA++
Sbjct: 86 KKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAIGADLP 145
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+V D+GGGT +V+++ G V + +GGD D+ +V +F R
Sbjct: 146 VDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIV-----SFVRK 195
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATAD----GPKHIETTLTRA 408
+ +L+ ++ AE+ KME+ + D PK I TL
Sbjct: 196 KYNLLIGER--------TAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTI--TLESK 245
Query: 409 KFEELCSDLLDRLKKPVETALRDA--KLSFNDLDE-VILVGGSTRIPAVQELVKKMTGKD 465
+ + + L + + + L D +LS + +D VIL GG + ++E + +
Sbjct: 246 EIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVP 305
Query: 466 PNVTVNPDEVVALG 479
+V NP E VA+G
Sbjct: 306 VHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-09
Identities = 94/384 (24%), Positives = 162/384 (42%), Gaps = 84/384 (21%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRL--VGQIAKRQAVV 170
K +GIDLGT N+ V G IV N E PSVVA ++ VG+ AK
Sbjct: 9 KDIGIDLGTANTLVYVKGKG---IVLN-E-----PSVVAIDTKTGKVLAVGEEAKE---- 55
Query: 171 NPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
+GR + +R V D F E + +L
Sbjct: 56 -----------MLGR-TPG--------NIEAIRPLKDGVIAD-------F---EATEAML 85
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
R + A + + V+ VP+ + +R A ++A AG + +I EP AA++ G
Sbjct: 86 RYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAG 145
Query: 291 ---FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347
E N +V D+GGGT +V+V+ +G G+ V S S + GD+ D+ +V ++
Sbjct: 146 LPVTEPVGN---MVVDIGGGTTEVAVISLG-GI--VYSES--IRVAGDEMDEAIVQYVRR 197
Query: 348 NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADG-------PKH 400
+ +L+ ++ AE+ K+E+ S A + G PK
Sbjct: 198 KYN-----LLIGER--------TAEEIKIEIGS---AYPLDEEESMEVRGRDLVTGLPKT 241
Query: 401 IETTLTRAKFEELCSDLLDRLKKPVETALRDAK--LSFNDLDE-VILVGGSTRIPAVQEL 457
IE ++ + E ++ L ++ + V++ L L+ + +D ++L GG + + +L
Sbjct: 242 IE--ISSEEVREALAEPLQQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKL 299
Query: 458 VKKMTGKDPNVTVNPDEVVALGAA 481
+ + TG ++ +P VA G
Sbjct: 300 LSEETGLPVHIAEDPLTCVARGTG 323
|
Length = 335 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 95/383 (24%), Positives = 153/383 (39%), Gaps = 83/383 (21%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPEN 174
+GIDLGT N+ V G IV N PSVVA K V E
Sbjct: 5 IGIDLGTANTLVYVKGRG---IVLNE------PSVVAI----RTDRDAKTKSILAVGHE- 50
Query: 175 TFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 234
K +G+ + V+ R ++D I E++ + K V
Sbjct: 51 ----AKEMLGKTPGNI------VAIRPMKDG---------VIADFEVTEKM-IKYFIKQV 90
Query: 235 DDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERK 294
F +I V+ VP+ +R A K++ AG + +I EP AA++ G +
Sbjct: 91 HSRKSFFKPRI---VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGAGLPVE 147
Query: 295 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEG 354
+V D+GGGT +V+V+ +G V S +GGD+FD+ +++++ +
Sbjct: 148 EPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRTYN---- 198
Query: 355 VVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIE-------TTLTR 407
LL +Q AE+ K+E+ S N D P+ +E T L R
Sbjct: 199 --LLIGEQ-------TAERIKIEIGSAYPLN----------DEPRKMEVRGRDLVTGLPR 239
Query: 408 AKFEELCSDLLDRLKKPVETALRDAKLSF--------NDLDE--VILVGGSTRIPAVQEL 457
E ++ + L++PV + K + D+ E ++L GG + + +L
Sbjct: 240 -TIEITSVEVREALQEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKL 298
Query: 458 VKKMTGKDPNVTVNPDEVVALGA 480
+ K TG V +P VA G
Sbjct: 299 LSKETGLPVIVADDPLLCVAKGT 321
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-09
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 15/134 (11%)
Query: 201 VVRDENGNVKLDC-----PAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAY 255
V D +G + + + + LR+L+ +A + L +I +T P
Sbjct: 13 GVADLDGEILPEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGG 72
Query: 256 FNDSQRTAT----------KDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLG 305
R A G + ++N+ AA+LA G K +T+LV DLG
Sbjct: 73 VPKENREVIILPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVVDLG 132
Query: 306 GGTFDVSVLEVGDG 319
GT ++++E G G
Sbjct: 133 TGTTGIAIVEDGKG 146
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 5e-08
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 12/132 (9%)
Query: 226 SAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 285
+ +++R+L D K L + T A +P + + AGLEVL +++EPTAA
Sbjct: 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA 133
Query: 286 SLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH----LGGDDFDKRV 341
+ + V D+GGGT +S+++ G ++ +G TH L G + +
Sbjct: 134 ADVLQLDDG-----GVVDIGGGTTGISIVKKGKVIYSADEPTGGTHMTLVLAG---NYGI 185
Query: 342 VDWLAENFKRDE 353
AE +KR
Sbjct: 186 SLEEAEQYKRGH 197
|
Length = 277 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 226 SAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 285
+ +++R+L D + L ++T A +P + + AG+EVL +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 286 SLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHL 332
+ + V D+GGGT +S+L+ G ++ +G TH+
Sbjct: 102 AAVLQIKNG-----AVVDVGGGTTGISILKKGKVIYSADEPTGGTHM 143
|
Length = 239 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 41/140 (29%), Positives = 64/140 (45%), Gaps = 30/140 (21%)
Query: 226 SAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI------AGLEVLRII 279
+ ++R+L + L ++T A +P T+ D I AGLEV ++
Sbjct: 69 AVTIVRRLKATLEEKLGRELTHAATAIPP------GTSEGDPRAIINVVESAGLEVTHVL 122
Query: 280 NEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG------ 333
+EPTAA+ G N V D+GGGT +S+L+ G V+ +G TH+
Sbjct: 123 DEPTAAAAVLGI--DNG---AVVDIGGGTTGISILKDGKVVYSADEPTGGTHMSLVLAGA 177
Query: 334 -GDDFDKRVVDWLAENFKRD 352
G F++ AE +KRD
Sbjct: 178 YGISFEE------AEQYKRD 191
|
Length = 267 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 2e-07
Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 56/241 (23%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRL--VGQIAKRQAVVNP 172
+GIDLGT N V G IV N PSVVA K +++ VG+ A+R
Sbjct: 6 IGIDLGTANVLVYVKGKG---IVLN------EPSVVAIDKNTNKVLAVGEEARR------ 50
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
+GR + V+ R +RD G + A +++ ++L+
Sbjct: 51 ---------MVGRTPGNI------VAIRPLRD--GVI-----------ADYDVTEKMLKY 82
Query: 233 LVDDA---SKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
++ A F +I ++ +P ++ A ++A AG + + +I EP AA++
Sbjct: 83 FINKACGKRFFSKPRI---MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGA 139
Query: 290 GFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENF 349
G + +V D+GGGT D++VL +G V TS + GD FD+ ++ ++ + +
Sbjct: 140 GLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKY 194
Query: 350 K 350
K
Sbjct: 195 K 195
|
Length = 336 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 9e-07
Identities = 70/282 (24%), Positives = 102/282 (36%), Gaps = 86/282 (30%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPS-------------------VVAYTKI 155
+G D GT N +VA M GKP ++ PS V AY
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDE 62
Query: 156 GDRL---------------------VGQIAKRQAVVNPENTFF--SVKRFIGRKMSEVDD 192
L G A Q + +PE +F S K F+G S +
Sbjct: 63 RQALLRRAIRYNREEDIDVTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLG--ASGLKP 120
Query: 193 ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTV 252
+ QV+ F E++ ++ + A L IT+AV+
Sbjct: 121 Q--QVAL--------------------F--EDLVCAMMLHIKQQAEAQLQAAITQAVIGR 156
Query: 253 PAYFN-----DSQRTA----TKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFD 303
P F ++ R A + A R AG + + EP AA L + + +LV D
Sbjct: 157 PVNFQGLGGEEANRQAEGILERAAKR-AGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVD 215
Query: 304 LGGGTFDVSVLEVG-------DGVFEVLSTSGDTHLGGDDFD 338
+GGGT D S+L +G D +L SG +GG+D D
Sbjct: 216 IGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLD 256
|
Length = 450 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 366 RLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPV 425
RL +AE+AK+ LS + SL FI+ + T +++ EE S L R+ + V
Sbjct: 336 RLVRSAEEAKIALSDQAETRASLDFISD------GLATEISQQGLEEAISQPLARILELV 389
Query: 426 ETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTV 470
+ AL A++ D + L GGS R P ++ + + P + +
Sbjct: 390 QLALDQAQVK---PDVIYLTGGSARSPLIRA---ALAQQLPGIPI 428
|
Length = 450 |
| >gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 6e-06
Identities = 74/378 (19%), Positives = 141/378 (37%), Gaps = 81/378 (21%)
Query: 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPE 173
++GIDLG N + GG TI+ PSVVA + + VV +
Sbjct: 1 IIGIDLG--NGNTKVVYGGGKTILF--------PSVVAPGEEEPLEGLLDPEDNDVVEYD 50
Query: 174 NTFFSV----KRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQV 229
++ V R + +D+ + Y+ L A+ K+ E+ +
Sbjct: 51 GKYYFVGELALREGLAEDYLDEDKYESDVYKA---------LLLAALAKEAKKNEVEVNL 101
Query: 230 -----LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTA 284
+ + + + +++ + +V + T +E +++ E
Sbjct: 102 VTGLPVSEYKEQKEEL-KERLKRGKHSV-KFNEGKTVTIN--------IEDVKVFPEGVG 151
Query: 285 ASLAYGFE---RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRV 341
A + ++ +LV D+GGGT DV V + G V S+SG LG D
Sbjct: 152 ALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVVFDNGK---PVESSSGSLELGVSDL---- 204
Query: 342 VDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHI 401
+ +A+ ++ G+ L + + + E K++ + I
Sbjct: 205 YEAIAKELNKEYGIDL-----SDEEIEEILRNGKIK----------------NYGKEEDI 243
Query: 402 ETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM 461
+ A EE +L+ LK+ L +D+D+VILVGG ++E +K++
Sbjct: 244 TEIIEEAA-EEYAEKILNELKE---------FLGLSDVDKVILVGGGA--ILLKEYLKEL 291
Query: 462 TGKDPNVTVNPDEVVALG 479
++ + +P A G
Sbjct: 292 FPENVVLVDDPQFANARG 309
|
ParM is a plasmid-encoded bacterial homolog of actin, which polymerizes into filaments similar to F-actin, and plays a vital role in plasmid segregation. ParM filaments segregate plasmids paired at midcell into the individual daughter cells. This subfamily also contains Thermoplasma acidophilum Ta0583, an active ATPase at physiological temperatures, which has a propensity to form filaments. Length = 312 |
| >gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 2e-04
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
Query: 405 LTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK 464
LTRA E + L D L LR+A + + L+GG + PA ++++ + G
Sbjct: 364 LTRAVLEGVTFALRDSL-----DILREAGGI--PIQSIRLIGGGAKSPAWRQMLADIFGT 416
Query: 465 DPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLD 498
P +E ALGAA+ G+ L
Sbjct: 417 -PVDVPEGEEGPALGAAILAAWALGEKDLAALCS 449
|
This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481 |
| >gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 8e-04
Identities = 51/233 (21%), Positives = 74/233 (31%), Gaps = 60/233 (25%)
Query: 303 DLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD--DFDKR-------------------- 340
D V+E GD E+L TSG + D FD R
Sbjct: 238 DAAAAALGAGVVEPGD-AMEMLGTSGVIIVVTDRPKFDPRLISSPHVVPGTYLLNGGMST 296
Query: 341 ---VVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQAN--ISLPFIT--- 392
+ W +NF +E A L E AEK A+ + LP++
Sbjct: 297 GGAALRWFRDNFGPEE---TEGGLDAYDELEEEAEKVP------PGADGLLFLPYLAGER 347
Query: 393 -----ATADGP---KHIETT---LTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDE 441
A G + T L RA E + L + +E A +
Sbjct: 348 TPIWDPDARGVFFGLTLGHTRAHLYRAVLEGVAYAL----RHILEIAEEAGV----KVSR 399
Query: 442 VILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDI 494
V+ VGG + ++ + G P VT +LG A+ V G D+
Sbjct: 400 VVAVGGGAKSRLWMQIKADVLGL-PVVTPENTVGASLGDALLAAVAVGVYDDL 451
|
This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 593 | |||
| KOG0100 | 663 | consensus Molecular chaperones GRP78/BiP/KAR2, HSP | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| KOG0102 | 640 | consensus Molecular chaperones mortalin/PBP74/GRP7 | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0101 | 620 | consensus Molecular chaperones HSP70/HSC70, HSP70 | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103 | 727 | consensus Molecular chaperones HSP105/HSP110/SSE1, | 100.0 | |
| KOG0104 | 902 | consensus Molecular chaperones GRP170/SIL1, HSP70 | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 100.0 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 100.0 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.97 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.96 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.91 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.91 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.86 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.84 | |
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.8 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.77 | |
| PTZ00452 | 375 | actin; Provisional | 99.75 | |
| PTZ00004 | 378 | actin-2; Provisional | 99.72 | |
| PTZ00281 | 376 | actin; Provisional | 99.71 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.7 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 99.69 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.69 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.64 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.54 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.46 | |
| KOG0679 | 426 | consensus Actin-related protein - Arp4p/Act3p [Cyt | 99.46 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 99.43 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 99.43 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 99.35 | |
| KOG0676 | 372 | consensus Actin and related proteins [Cytoskeleton | 99.2 | |
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 99.19 | |
| KOG0677 | 389 | consensus Actin-related protein Arp2/3 complex, su | 98.99 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.99 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 98.89 | |
| KOG0797 | 618 | consensus Actin-related protein [Cytoskeleton] | 98.75 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 98.69 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.67 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 98.66 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.63 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 98.38 | |
| KOG0680 | 400 | consensus Actin-related protein - Arp6p [Cytoskele | 98.36 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 98.32 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 98.28 | |
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 98.2 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.89 | |
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 97.57 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 97.36 | |
| KOG0681 | 645 | consensus Actin-related protein - Arp5p [Cytoskele | 97.32 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 97.3 | |
| KOG0678 | 415 | consensus Actin-related protein Arp2/3 complex, su | 97.06 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 96.93 | |
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 96.74 | |
| PRK15027 | 484 | xylulokinase; Provisional | 96.39 | |
| PF13941 | 457 | MutL: MutL protein | 96.22 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 96.2 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 96.16 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 96.11 | |
| PLN02669 | 556 | xylulokinase | 95.96 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 95.87 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 95.85 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 95.71 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 95.69 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 95.64 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 95.64 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 95.61 | |
| PRK04123 | 548 | ribulokinase; Provisional | 95.53 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 95.52 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 95.44 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 95.42 | |
| KOG0681 | 645 | consensus Actin-related protein - Arp5p [Cytoskele | 95.27 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 95.24 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 95.23 | |
| KOG2517 | 516 | consensus Ribulose kinase and related carbohydrate | 95.2 | |
| PLN02295 | 512 | glycerol kinase | 94.95 | |
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 94.93 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 94.79 | |
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 94.65 | |
| PF01968 | 290 | Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr | 94.1 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 94.0 | |
| PRK09604 | 332 | UGMP family protein; Validated | 93.54 | |
| PRK13321 | 256 | pantothenate kinase; Reviewed | 93.29 | |
| KOG2531 | 545 | consensus Sugar (pentulose and hexulose) kinases [ | 93.18 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 92.41 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 92.29 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 92.11 | |
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 91.96 | |
| PRK09557 | 301 | fructokinase; Reviewed | 91.56 | |
| COG1521 | 251 | Pantothenate kinase type III (Bvg accessory factor | 91.34 | |
| PRK13318 | 258 | pantothenate kinase; Reviewed | 91.04 | |
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 90.95 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 90.82 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 90.81 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 90.01 | |
| PLN02666 | 1275 | 5-oxoprolinase | 89.89 | |
| PRK00292 | 316 | glk glucokinase; Provisional | 89.85 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 89.08 | |
| TIGR03723 | 314 | bact_gcp putative glycoprotease GCP. This model re | 88.55 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 85.88 | |
| PRK00976 | 326 | hypothetical protein; Provisional | 85.64 | |
| PF03702 | 364 | UPF0075: Uncharacterised protein family (UPF0075); | 85.16 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 85.12 | |
| TIGR00329 | 305 | gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami | 84.87 | |
| COG2971 | 301 | Predicted N-acetylglucosamine kinase [Carbohydrate | 83.61 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 83.14 | |
| PRK14101 | 638 | bifunctional glucokinase/RpiR family transcription | 82.71 | |
| PTZ00340 | 345 | O-sialoglycoprotein endopeptidase-like protein; Pr | 82.07 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 81.63 | |
| TIGR03722 | 322 | arch_KAE1 universal archaeal protein Kae1. This fa | 81.34 | |
| COG2192 | 555 | Predicted carbamoyl transferase, NodU family [Post | 80.59 | |
| COG5026 | 466 | Hexokinase [Carbohydrate transport and metabolism] | 80.44 | |
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 80.15 |
| >KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-100 Score=750.18 Aligned_cols=479 Identities=55% Similarity=0.878 Sum_probs=459.4
Q ss_pred cCCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 109 VVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 109 ~~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
.+.+.|||||+||||++|+++.+|+++|+.|.+|+|.+||+|+|.++ ++++|+.|+.+...||++++++.||++|+.++
T Consensus 33 ~~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~ 111 (663)
T KOG0100|consen 33 EKLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFN 111 (663)
T ss_pred hccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccC
Confidence 35799999999999999999999999999999999999999999988 99999999999999999999999999999998
Q ss_pred --hhhhhhccCceEEEECCCCcEEEEeCCC---CeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 189 --EVDDESKQVSYRVVRDENGNVKLDCPAI---GKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 189 --~~~~~~~~~~~~v~~~~~g~~~i~~~~~---~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
.++++.+.|||+++. .+++..+++... .+.|+|+++.+|+|.++++.++.+++..+.+.|+||||||++.||++
T Consensus 112 d~~vq~Dik~~Pfkvv~-k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQA 190 (663)
T KOG0100|consen 112 DKSVQKDIKFLPFKVVN-KDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQA 190 (663)
T ss_pred ChhhhhhhhcCceEEEc-CCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhh
Confidence 789999999999985 556666665443 56799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceEEEechhHHHHHHhccccCC-CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDAGRIAGLEVLRIINEPTAASLAYGFERKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~-~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+++|...||++++++|+||+|||++|+++.+. ..++||||+||||||+|++.+.+++|+++++.|+.++||.+||++++
T Consensus 191 TKDAGtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 191 TKDAGTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred hcccceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 99999999999999999999999999999765 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 047555 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK 422 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 422 (593)
+|+...|+++.+.+++++.+++.+|+++||+||+.||+..+..++++++.... +++-++||..||++--+++++..
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~----DfSEtLtRAkFEElNmDLFr~Tl 346 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGV----DFSETLTRAKFEELNMDLFRKTL 346 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccc----cccchhhhhHHHHhhhHHHHHhh
Confidence 99999999999999999999999999999999999999999999999876543 58899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh-CCCCCCCCCChhHHHhHHHHHhhhhcCC--CCceEEEec
Q 047555 423 KPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT-GKDPNVTVNPDEVVALGAAVQGGVLAGD--VSDIVLLDV 499 (593)
Q Consensus 423 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~-g~~v~~~~~p~~aVA~GAal~a~~l~~~--~~~~~~~~~ 499 (593)
++++++|+++++...+|+.|+||||++|+|.+|++|+++| |.++....||++|||+|||.+|..++|. ..+++++|+
T Consensus 347 kPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv 426 (663)
T KOG0100|consen 347 KPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDV 426 (663)
T ss_pred HHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEee
Confidence 9999999999999999999999999999999999999999 8899999999999999999999999994 568999999
Q ss_pred ccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEE
Q 047555 500 TPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEV 579 (593)
Q Consensus 500 ~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v 579 (593)
+|+++|||+.+|.|..|||||+.+|+++++.|++..|+|+.+.|++|+||+.+..+|.+||.|.++||||+|+|.++|+|
T Consensus 427 ~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEV 506 (663)
T KOG0100|consen 427 NPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEV 506 (663)
T ss_pred ccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCceEEEEc
Q 047555 580 KFDIDANGILSVTA 593 (593)
Q Consensus 580 ~f~~d~~g~l~v~a 593 (593)
+|++|.||+|+|+|
T Consensus 507 tFevDangiL~VsA 520 (663)
T KOG0100|consen 507 TFEVDANGILQVSA 520 (663)
T ss_pred EEEEccCceEEEEe
Confidence 99999999999987
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-86 Score=737.38 Aligned_cols=514 Identities=91% Similarity=1.289 Sum_probs=481.4
Q ss_pred CCCCCCchhhhhcccccc-ccccccCCCCcccCCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCc
Q 047555 79 PHFGLPNAAFLKLNNEKN-NTRRRCNVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGD 157 (593)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~ 157 (593)
.+|.+|+++...+....| .+|+++ ++|+++.++.+||||||||||+||++.+|.+.++.|..|++.+||+|+|.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~ 84 (673)
T PLN03184 6 APFSTPTAAFLKMGKRRGNGARRRA-GGPLRVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGD 84 (673)
T ss_pred cCCCCCCcchhhhhhhhcccccccc-CCCccccCCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCC
Confidence 346678887776644443 444443 789999899999999999999999999999999999999999999999987778
Q ss_pred EEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHH
Q 047555 158 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDA 237 (593)
Q Consensus 158 ~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a 237 (593)
+++|..|+.+...+|.++++++||++|+++.+++.+.+.++|.++.++++.+.+.++..++.++++++.+++|++|++.+
T Consensus 85 ~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~a 164 (673)
T PLN03184 85 RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDA 164 (673)
T ss_pred EEECHHHHHhhhhCchhhhHHHHHhhCCCcchhhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887777888899999999999998888777889999999999999999999
Q ss_pred HHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEc
Q 047555 238 SKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 238 ~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~ 317 (593)
+.+++..+.++|||||++|++.||+++++|++.||++++++++||+|||++|+.+...+..+||||+||||+|+|++++.
T Consensus 165 e~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~DvSi~~~~ 244 (673)
T PLN03184 165 SKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNETILVFDLGGGTFDVSVLEVG 244 (673)
T ss_pred HHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHCCCCeEEEeCcHHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEec
Confidence 99999999999999999999999999999999999999999999999999999887778899999999999999999999
Q ss_pred CCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCC
Q 047555 318 DGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADG 397 (593)
Q Consensus 318 ~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~ 397 (593)
++.++++++.++.++||.+||+.|++|+.++|+.+++.++..+++.+.+|+.+||++|+.||....+.+.++.+....++
T Consensus 245 ~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g 324 (673)
T PLN03184 245 DGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADG 324 (673)
T ss_pred CCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCC
Confidence 99999999999999999999999999999999998888888899999999999999999999999888888866555555
Q ss_pred CceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHH
Q 047555 398 PKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVA 477 (593)
Q Consensus 398 ~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA 477 (593)
..++++.|||++|+++++++++++.++|+++|+++++...+|+.|+||||+|++|.|+++|+++||.++....||++|||
T Consensus 325 ~~~~~~~itR~~fe~l~~~l~~r~~~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA 404 (673)
T PLN03184 325 PKHIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVA 404 (673)
T ss_pred CceEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999988888999999999
Q ss_pred hHHHHHhhhhcCCCCceEEEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCc
Q 047555 478 LGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNK 557 (593)
Q Consensus 478 ~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~ 557 (593)
.|||++|+.+++..+++.+.|++|++||+++.++.+.+|||+|+++|++++++|.+..|+|+.+.|.||||++.+..+|.
T Consensus 405 ~GAAi~aa~ls~~~~~~~~~dv~p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~ 484 (673)
T PLN03184 405 LGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNK 484 (673)
T ss_pred HHHHHHHHHhccCccceEEEecccccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCc
Confidence 99999999999988899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEEEc
Q 047555 558 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593 (593)
Q Consensus 558 ~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v~a 593 (593)
.||+|.|+++|+.++|.++|+|+|++|.||+|+|+|
T Consensus 485 ~lg~~~i~~i~~~~~g~~~i~v~f~id~~GiL~V~a 520 (673)
T PLN03184 485 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVSA 520 (673)
T ss_pred eEEEEEEeCCCCCCCCCceEEEEEEeCCCCeEEEEE
Confidence 999999999999999988999999999999999985
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-86 Score=732.75 Aligned_cols=481 Identities=56% Similarity=0.914 Sum_probs=455.7
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS-- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~-- 188 (593)
++.+||||||||||+||++.++.++++.|..|.+.+||+|+|.++ ++++|..|+.+...+|.++++++||++|+.+.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~ 104 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDE 104 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccH
Confidence 357999999999999999999999999999999999999999854 78999999999999999999999999999876
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.++.+.+.|||.++.+.++...+... .++.++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 105 ~v~~~~~~~p~~vv~~~~~~~~i~~~-~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 105 HIQKDIKNVPYKIVRAGNGDAWVQDG-NGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHHHhhccCcEEEEEcCCCceEEEeC-CCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 57778889999999888888777643 36789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.||++++++++||+|||++|+.+...+..++|||+||||||+|++++.++.++++++.|+..+||.+||++|.+|+.++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~ 263 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEE 263 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHH
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
|+.+++.++..++..+.+|+.+||++|+.||....+.+.++.+..+.++..++.+.|||++|+++++++++++.++++++
T Consensus 264 f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~~~ 343 (657)
T PTZ00186 264 FRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCKQC 343 (657)
T ss_pred HhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888999999999999999999999999999988776555555678899999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
|+++++...+|+.|+||||+|++|.|+++|+++||.++....||++|||+|||++|+.+++..+++.+.|++|++||+++
T Consensus 344 L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgie~ 423 (657)
T PTZ00186 344 MKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIET 423 (657)
T ss_pred HHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeecccccccee
Confidence 99999999999999999999999999999999999888889999999999999999999998889999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+.+|||||+++|+++++.|++..|+|+.+.|.|||||+.+..+|..||+|.|.|+|+.|+|.++|+|+|++|.||+
T Consensus 424 ~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD~nGi 503 (657)
T PTZ00186 424 LGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGI 503 (657)
T ss_pred cCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEcCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
|+|+|
T Consensus 504 L~V~a 508 (657)
T PTZ00186 504 CHVTA 508 (657)
T ss_pred EEEEE
Confidence 99986
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-85 Score=731.55 Aligned_cols=483 Identities=67% Similarity=1.088 Sum_probs=461.2
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
|+.+||||||||||+||++.+|.+.++.|..|.+.+||+|+|.+++++++|..|+.+...+|.++++++||++|+++.++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~~ 80 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDEL 80 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchhh
Confidence 35799999999999999999999999999999999999999987789999999999999999999999999999998877
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
+.+.+.+||.+..+++|.+.+.++..++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++.
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 160 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRI 160 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 77888999999999999999888777889999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
||++++.+++||+|||++|+.+...+..+||||+||||+|++++++.++.++++++.++..+||.+||++|++|+.++|.
T Consensus 161 AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~ 240 (668)
T PRK13410 161 AGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240 (668)
T ss_pred cCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHH
Confidence 99999999999999999999887778899999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALR 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 430 (593)
.+.+.++..+++++.+|+.+||++|+.||....+.+.++++..+.+++.++.+.|+|++|+++|+++++++.++|+++|+
T Consensus 241 ~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i~~~L~ 320 (668)
T PRK13410 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPVKRALK 320 (668)
T ss_pred hhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999889988877665566667889999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeC
Q 047555 431 DAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLG 510 (593)
Q Consensus 431 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~ 510 (593)
++++...+|+.|+||||+|++|+|++.|++.|+.++....||++|||+|||++|+.+++..+++.+.|++|+++|+++.+
T Consensus 321 ~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~slgie~~~ 400 (668)
T PRK13410 321 DAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIG 400 (668)
T ss_pred HcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccccccceecC
Confidence 99999999999999999999999999999999988889999999999999999999999888999999999999999999
Q ss_pred CEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEE
Q 047555 511 GVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILS 590 (593)
Q Consensus 511 ~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~ 590 (593)
+.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++....+|+.||+|.|+++|+.++|.++|+|+|++|.||+|+
T Consensus 401 g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~id~nGiL~ 480 (668)
T PRK13410 401 GVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480 (668)
T ss_pred CeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEEECCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEc
Q 047555 591 VTA 593 (593)
Q Consensus 591 v~a 593 (593)
|+|
T Consensus 481 V~a 483 (668)
T PRK13410 481 VSA 483 (668)
T ss_pred EEE
Confidence 985
|
|
| >KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-86 Score=672.61 Aligned_cols=481 Identities=65% Similarity=1.007 Sum_probs=473.3
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS-- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~-- 188 (593)
.+.++|||+|||+|+++++.++.+.++.|.+|.+.+|++|+|..++++++|..|+++...||+++++.-||++||.++
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
+++.+.+.+||+++...+|..++++ .|+.++|.++.+++|.+++++++.+++..+.+.|+|||+||++.||+++++|.
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~--~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA--RGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe--CCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 8899999999999999999999998 69999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.+|++++++++||+|||++|+++.+.+..++|+|+||||+|++++.+.++.+++.++.++.++||++||..+.+|+..+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~ 263 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSE 263 (640)
T ss_pred hhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHh
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
|+...++++.++..++.+|++++|++|.+||...+.++++|++..+..|++++++.+||.+|++++.+++++.++.++++
T Consensus 264 fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~~a 343 (640)
T KOG0102|consen 264 FKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCKKA 343 (640)
T ss_pred hhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
|+++++...||+.|+|+||.+++|.+++.++++||..+....||+++||.||++++..++|++++++++|++|+++|+++
T Consensus 344 L~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgiet 423 (640)
T KOG0102|consen 344 LRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGIET 423 (640)
T ss_pred HHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.|..|+++++.||+.++..|+++.|+|+.++|.++|||+++.++|+++|+|.+.||||.|+|.++|+|+|++|.||+
T Consensus 424 lggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdanGI 503 (640)
T KOG0102|consen 424 LGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDANGI 503 (640)
T ss_pred hhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
.+|+|
T Consensus 504 ~~vsA 508 (640)
T KOG0102|consen 504 GTVSA 508 (640)
T ss_pred eeeeh
Confidence 99987
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-83 Score=717.08 Aligned_cols=480 Identities=65% Similarity=1.025 Sum_probs=452.8
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
+.+||||||||||+||++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||++|+.+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 46999999999999999999999999999999999999999877799999999999999999999999999999988777
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIA 271 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~A 271 (593)
.+.+.+||.++...++.+.+.+. ++.++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|++.|
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~i~--~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~A 159 (653)
T PRK13411 82 EERSRVPYTCVKGRDDTVNVQIR--GRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIA 159 (653)
T ss_pred HHhhcCCceEEecCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHHc
Confidence 77789999999888887777665 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHhccccC-CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 272 GLEVLRIINEPTAASLAYGFERK-NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~-~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
|++++++++||+|||++|+.... .+.++||||+||||+|++++++.++.++++++.++..+||.+||+.|++|+.++|+
T Consensus 160 Gl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~ 239 (653)
T PRK13411 160 GLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQ 239 (653)
T ss_pred CCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987643 46789999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALR 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 430 (593)
.+.+.++..++..+.+|+++||++|+.||....+.++++++..+..+..++++.|||++|+++++|+++++.++++++|+
T Consensus 240 ~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~ 319 (653)
T PRK13411 240 QQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPMQQALK 319 (653)
T ss_pred HhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999999999999999999898988876554445567899999999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-CCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEee
Q 047555 431 DAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-KDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETL 509 (593)
Q Consensus 431 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~ 509 (593)
++++...+|+.|+||||+|++|+|++.|++.|+ ..+....||++|||+|||++|+.+++..+++.+.|++|++||++..
T Consensus 320 ~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~~ 399 (653)
T PRK13411 320 DAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETL 399 (653)
T ss_pred HcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccceeeEEec
Confidence 999998999999999999999999999999996 5678889999999999999999999888899999999999999999
Q ss_pred CCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceE
Q 047555 510 GGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGIL 589 (593)
Q Consensus 510 ~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l 589 (593)
++.+.+||++|+++|+++++.|++..|+|+.+.|.||||++....+|..||+|.+.++|+.++|.++|+|+|++|.||+|
T Consensus 400 ~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~Gil 479 (653)
T PRK13411 400 GEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGIL 479 (653)
T ss_pred CCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEECCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999998899999999999999
Q ss_pred EEEc
Q 047555 590 SVTA 593 (593)
Q Consensus 590 ~v~a 593 (593)
+|+|
T Consensus 480 ~v~a 483 (653)
T PRK13411 480 KVSA 483 (653)
T ss_pred EEEE
Confidence 9986
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-83 Score=717.31 Aligned_cols=481 Identities=59% Similarity=0.963 Sum_probs=456.0
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS-- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~-- 188 (593)
++.+||||||||||+||++.++.++++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||++|++++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 457999999999999999999999999999999999999999877789999999999999999999999999999886
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.++.+.+.+||.++.++++.+.+.+. ++.++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++|+
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEAQ--GKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 46667788999999988888877765 7789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.||++++++++||+|||++|+.....+..+||||+||||+|++++++.++.++++++.|+..+||.+||+.|++|+.++
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~ 277 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAE 277 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999998877788999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
|+++++.++..++..+.+|+.+||++|+.||......+.++.+..+.++..++.+.|||++|+++++|+++++.++++++
T Consensus 278 f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i~~~ 357 (663)
T PTZ00400 278 FKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPCEKC 357 (663)
T ss_pred hhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888888999999999999999999999988888888776555556678999999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
|+++++...+|+.|+||||+|++|+|+++|++.||.++....||+++||+|||++|+.+++..+++.+.|++|++||++.
T Consensus 358 L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~slgi~~ 437 (663)
T PTZ00400 358 IKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIET 437 (663)
T ss_pred HHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccceEEEe
Confidence 99999999999999999999999999999999999888889999999999999999999998889999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+.+||++|+++|.++++.|++..|+|+.+.|.||||++.+..+|..||+|.|.++|+.++|.++|+|+|++|.||+
T Consensus 438 ~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id~~Gi 517 (663)
T PTZ00400 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517 (663)
T ss_pred cCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
|+|+|
T Consensus 518 l~v~a 522 (663)
T PTZ00400 518 MNISA 522 (663)
T ss_pred EEEEE
Confidence 99985
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-82 Score=709.95 Aligned_cols=480 Identities=69% Similarity=1.073 Sum_probs=455.0
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
+.+||||||||||+||++.+|.++++.|..|++.+||+|+|..++++++|+.|+.+...+|.++++++||+||++...++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~ 81 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRRDEEVQ 81 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCCchHHH
Confidence 46999999999999999999999999999999999999999877799999999999999999999999999999955777
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIA 271 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~A 271 (593)
.+.+.+||.++.++++...+.+. +..++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++.|
T Consensus 82 ~~~~~~p~~~~~~~~~~~~~~~~--~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 159 (627)
T PRK00290 82 KDIKLVPYKIVKADNGDAWVEID--GKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIA 159 (627)
T ss_pred HHhhcCCeEEEEcCCCceEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHHc
Confidence 78889999999988888777664 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 272 GLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
|++++.+++||+|||++|+.....+..+||||+||||+|+|+++++++.++++++.++..+||.+||++|++|+.++|+.
T Consensus 160 Gl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 239 (627)
T PRK00290 160 GLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKK 239 (627)
T ss_pred CCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988766678999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
+++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+.+++.++.+.|||++|+++++++++++.+.++++|++
T Consensus 240 ~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~l~~ 319 (627)
T PRK00290 240 ENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPCKQALKD 319 (627)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999998888888766554455678899999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeCC
Q 047555 432 AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 432 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+++...+|+.|+||||+|++|+|++.|++.||.++....||++|||.|||++|+.+++..+++.+.|++|++||++..++
T Consensus 320 a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~slgi~~~~~ 399 (627)
T PRK00290 320 AGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGG 399 (627)
T ss_pred cCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEEEEEecCC
Confidence 99999999999999999999999999999999988899999999999999999999998899999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.+.+|||+|+++|++++++|++..|+|+.+.|.||||++....+|..||+|.|+++|+.++|.++|+|+|++|.||+|+|
T Consensus 400 ~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~gil~v 479 (627)
T PRK00290 400 VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHV 479 (627)
T ss_pred eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEECCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 480 ~a 481 (627)
T PRK00290 480 SA 481 (627)
T ss_pred EE
Confidence 85
|
|
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-82 Score=705.35 Aligned_cols=482 Identities=79% Similarity=1.187 Sum_probs=457.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
+.+||||||||||+||++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|+++++++||++|+.++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~~~ 81 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSEIS 81 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHHHH
Confidence 47999999999999999999999999999999999999999877789999999999999999999999999999988777
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIA 271 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~A 271 (593)
...+.|+|.+..++++.+.+.++..+..++++++.+++|++|++.++.+++..+.++|||||++|++.||+++++|++.|
T Consensus 82 ~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~A 161 (621)
T CHL00094 82 EEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIA 161 (621)
T ss_pred hhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 77788999999988899988887778889999999999999999999999998999999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 272 GLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
|++++++++||+|||++|+.+...+..+||||+||||+|+|+++++++.++++++.++..+||++||+.|++|+.++|+.
T Consensus 162 Gl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~ 241 (621)
T CHL00094 162 GLEVLRIINEPTAASLAYGLDKKNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKK 241 (621)
T ss_pred CCceEEEeccHHHHHHHhccccCCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877788999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
+++.++..+++.+.+|+.+||++|+.||......+.++.+..+.++..++...|+|++|+++++++++++.++|+++|++
T Consensus 242 ~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i~~~L~~ 321 (621)
T CHL00094 242 KEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPVENALKD 321 (621)
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98888888999999999999999999999888888888765444455678899999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeCC
Q 047555 432 AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 432 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+++...+|+.|+|+||+|++|.|++.|++.||.++....||++|||.|||++|+.+++..+++.+.|++|++||++..++
T Consensus 322 a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~~lgi~~~~~ 401 (621)
T CHL00094 322 AKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGG 401 (621)
T ss_pred cCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeeceeeeeeccCC
Confidence 99998999999999999999999999999999888889999999999999999999998889999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.+.+|||+|+++|+++++.|.+..|+|+.+.|.||||++....+|..||+|.|+++|+.++|.++|+|+|++|.||+|+|
T Consensus 402 ~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~id~~Gil~v 481 (621)
T CHL00094 402 VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSV 481 (621)
T ss_pred EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 482 ~~ 483 (621)
T CHL00094 482 TA 483 (621)
T ss_pred EE
Confidence 85
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-81 Score=698.82 Aligned_cols=478 Identities=71% Similarity=1.105 Sum_probs=451.9
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDD 192 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~ 192 (593)
.+||||||||||+||++.+|.+.++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||+||+++.+++.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~~~~~ 80 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFDEVTE 80 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCchHHHH
Confidence 37999999999999999999999999999999999999999877899999999999999999999999999999877777
Q ss_pred hhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q 047555 193 ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAG 272 (593)
Q Consensus 193 ~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AG 272 (593)
..+.+||. +..+++.+.+.+. ++.++|+++++++|++|++.++.+++.++.++|||||++|++.||+++++|++.||
T Consensus 81 ~~~~~~~~-v~~~~~~~~~~v~--~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AG 157 (595)
T TIGR02350 81 EAKRVPYK-VVGDGGDVRVKVD--GKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAG 157 (595)
T ss_pred HhhcCCee-EEcCCCceEEEEC--CEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcC
Confidence 78889999 5567787777765 78899999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhcccc-CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 273 LEVLRIINEPTAASLAYGFER-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 273 l~~v~li~Ep~AAal~~~~~~-~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
++++.+++||+|||++|+... ..+..+||||+||||+|+|++++.++.++++++.++..+||.+||+.|++|+.++|++
T Consensus 158 l~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~ 237 (595)
T TIGR02350 158 LEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKK 237 (595)
T ss_pred CceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999998875 5688999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
+++.++..++..+.+|+++||++|+.||....+.+.++.+..+.++..++++.|||++|+++++|+++++.++++++|++
T Consensus 238 ~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~~l~~ 317 (595)
T TIGR02350 238 EEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQALKD 317 (595)
T ss_pred hhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999988888888766555555678899999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeCC
Q 047555 432 AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 432 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+++...+|+.|+|+||+|++|+|++.|++.||.++....||++|||.|||++|+.+++..+++.+.|++|++||++..++
T Consensus 318 a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~~~~~ 397 (595)
T TIGR02350 318 AGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGG 397 (595)
T ss_pred cCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEEecCC
Confidence 99999999999999999999999999999999888889999999999999999999988889999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.+.+||++|+++|++++++|++..|+|+.+.|.||||++....+|..||++.|+++++.++|.++|+|+|++|.||+|+|
T Consensus 398 ~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G~l~v 477 (595)
T TIGR02350 398 VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHV 477 (595)
T ss_pred ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 478 ~~ 479 (595)
T TIGR02350 478 SA 479 (595)
T ss_pred EE
Confidence 85
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-80 Score=688.10 Aligned_cols=467 Identities=46% Similarity=0.754 Sum_probs=436.6
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhhh
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDE 193 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~~ 193 (593)
+||||||||||+||++.+|+++++.|..|++.+||+|+|.+++++++|..|+.+...+|.++++++||++|+.+.+++.
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 5899999999999999999999999999999999999999877999999999999999999999999999998876554
Q ss_pred hccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCC
Q 047555 194 SKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGL 273 (593)
Q Consensus 194 ~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl 273 (593)
.+.+||.+...+++.+.+.+.. ..++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|++.||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 FSILPYRFVDGPGEMVRLRTVQ--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred cccCCEEEEEcCCCceEEEeCC--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 6778999988888888887653 47899999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhh
Q 047555 274 EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDE 353 (593)
Q Consensus 274 ~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 353 (593)
+++++++||+|||++|+.+...+..+||||+||||+|++++++.++.++++++.++..+||.+||+.|++|+.++++
T Consensus 158 ~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~--- 234 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLG--- 234 (599)
T ss_pred CceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhC---
Confidence 99999999999999999887778899999999999999999999999999999999999999999999999997653
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047555 354 GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAK 433 (593)
Q Consensus 354 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~ 433 (593)
.+...+++.+.+|+.+||++|+.||......+.++. + ..++.+.|||++|+++++|+++++.++++++|++++
T Consensus 235 -~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~-----~-g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~ 307 (599)
T TIGR01991 235 -ISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL-----D-GKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAG 307 (599)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE-----C-CcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344567888999999999999999998888887763 1 246889999999999999999999999999999999
Q ss_pred CCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC--CCceEEEecccccceEEeeCC
Q 047555 434 LSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD--VSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 434 ~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~--~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+...+|+.|+||||+|++|+|+++|++.|+..+....||++|||.|||++|+.+++. ..++.+.|++|++||+++.++
T Consensus 308 ~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slgi~~~~g 387 (599)
T TIGR01991 308 LSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGG 387 (599)
T ss_pred CChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeEEEecCC
Confidence 999999999999999999999999999999888889999999999999999999874 357999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.+.+|||+|+++|+++++.|++..|+|+.+.|.||||++....+|..||+|.|.++|+.++|.++|+|+|++|.||+|+|
T Consensus 388 ~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V 467 (599)
T TIGR01991 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467 (599)
T ss_pred EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 468 ~a 469 (599)
T TIGR01991 468 SA 469 (599)
T ss_pred EE
Confidence 86
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-80 Score=684.34 Aligned_cols=466 Identities=46% Similarity=0.750 Sum_probs=434.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
...+||||||||||+||++.+|+++++.|..|++.+||+|+|.++ .+++|..|+.+...+|.++++++||++|+.+.++
T Consensus 18 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 96 (616)
T PRK05183 18 RRLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNTISSVKRFMGRSLADI 96 (616)
T ss_pred CCeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhhHHHHHHHhCCCchhh
Confidence 457999999999999999999999999999999999999999876 5999999999999999999999999999998877
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
+...+.+||.+...++|.+.+.+. +..++|+++.+++|++|++.++.+++..+.++|||||++|++.||+++++|++.
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 174 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTA--QGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARL 174 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEec--CCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHH
Confidence 666778999988887888887765 347899999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
||++++++++||+|||++|+.+...+..++|||+||||+|+|++++.++.++++++.++..+||.+||+.|++|+.++++
T Consensus 175 AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~ 254 (616)
T PRK05183 175 AGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAG 254 (616)
T ss_pred cCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999887678899999999999999999999999999999999999999999999999998775
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALR 430 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~ 430 (593)
.. ...+++.+.+|+.+||++|+.||....+.+.++. +...|||++|+++++|+++++.++++++|+
T Consensus 255 ~~----~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~ 320 (616)
T PRK05183 255 LS----PRLDPEDQRLLLDAARAAKEALSDADSVEVSVAL----------WQGEITREQFNALIAPLVKRTLLACRRALR 320 (616)
T ss_pred CC----cCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEec----------CCCeEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3357888999999999999999998888877742 112499999999999999999999999999
Q ss_pred HcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC--CCceEEEecccccceEEe
Q 047555 431 DAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD--VSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 431 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~--~~~~~~~~~~~~s~gi~~ 508 (593)
++++...+|+.|+||||+|++|+|++.|+++||..+....||++|||+|||++|+.+++. ..++.+.|++|++||++.
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slgi~~ 400 (616)
T PRK05183 321 DAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLET 400 (616)
T ss_pred HcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccccccee
Confidence 999999999999999999999999999999999888888999999999999999999875 458999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+.+|||+|+++|+++++.|++..|+|+.+.|.|||||+....+|..||+|.|.|+|+.|+|.++|+|+|++|.||+
T Consensus 401 ~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gi 480 (616)
T PRK05183 401 MGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGL 480 (616)
T ss_pred cCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
|+|+|
T Consensus 481 l~V~a 485 (616)
T PRK05183 481 LSVTA 485 (616)
T ss_pred EEEEE
Confidence 99986
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-79 Score=687.64 Aligned_cols=479 Identities=54% Similarity=0.858 Sum_probs=443.5
Q ss_pred CCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc-
Q 047555 110 VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS- 188 (593)
Q Consensus 110 ~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~- 188 (593)
..+.+||||||||||+||++.++.++++.|..|++.+||+|+|.++ ++++|+.|+.+...+|.++++++||+||+.++
T Consensus 2 ~~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d 80 (653)
T PTZ00009 2 TKGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDD 80 (653)
T ss_pred CcccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCc
Confidence 4567999999999999999999999999999999999999999754 78999999999999999999999999999886
Q ss_pred -hhhhhhccCceEEEECCCCcEEEEeCCC--CeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 047555 189 -EVDDESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATK 265 (593)
Q Consensus 189 -~~~~~~~~~~~~v~~~~~g~~~i~~~~~--~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~ 265 (593)
.++...+.|||.++.+.++...+.+... .+.++|+++++++|++|++.++.+++..+.++|||||++|++.||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 160 (653)
T PTZ00009 81 SVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATK 160 (653)
T ss_pred hhHhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHH
Confidence 4677778899999988888776665433 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEechhHHHHHHhccccC--CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFERK--NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~~--~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
+|++.||++++++++||+|||++|+.... .+..+||||+||||+|+|++++.++.++++++.++..+||.+||.+|++
T Consensus 161 ~Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~ 240 (653)
T PTZ00009 161 DAGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVE 240 (653)
T ss_pred HHHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHH
Confidence 99999999999999999999999987643 3678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhh-CCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 047555 344 WLAENFKRDE-GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK 422 (593)
Q Consensus 344 ~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 422 (593)
|+.++|+.++ +.++..+++++.+|+.+||++|+.||....+.+.++.+..+ .++++.|||++|+++++++++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~----~d~~~~itR~~fe~l~~~l~~~~~ 316 (653)
T PTZ00009 241 FCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEG----IDYNVTISRARFEELCGDYFRNTL 316 (653)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCC----ceEEEEECHHHHHHHHHHHHHHHH
Confidence 9999998776 46777889999999999999999999999998888765432 358899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-CCCCCCCCChhHHHhHHHHHhhhhcCC----CCceEEE
Q 047555 423 KPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-KDPNVTVNPDEVVALGAAVQGGVLAGD----VSDIVLL 497 (593)
Q Consensus 423 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-~~v~~~~~p~~aVA~GAal~a~~l~~~----~~~~~~~ 497 (593)
+.++++|++++++..+|+.|+||||+|++|+|+++|++.|+ .++....||++|||+|||++|+.+++. ..++.+.
T Consensus 317 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~ 396 (653)
T PTZ00009 317 QPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLL 396 (653)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEE
Confidence 99999999999998999999999999999999999999996 577889999999999999999999863 4678999
Q ss_pred ecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeE
Q 047555 498 DVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 577 (593)
Q Consensus 498 ~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i 577 (593)
|++|++||++..++.+.+||++|+++|++++++|++..|+|+.+.|.||||++....+|..||+|.+.++|+.++|.++|
T Consensus 397 dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i 476 (653)
T PTZ00009 397 DVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQI 476 (653)
T ss_pred eecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999998899
Q ss_pred EEEEEECCCceEEEEc
Q 047555 578 EVKFDIDANGILSVTA 593 (593)
Q Consensus 578 ~v~f~~d~~g~l~v~a 593 (593)
+|+|++|.||+|+|++
T Consensus 477 ~v~f~id~~Gil~v~~ 492 (653)
T PTZ00009 477 EVTFDIDANGILNVSA 492 (653)
T ss_pred EEEEEECCCCeEEEEE
Confidence 9999999999999985
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-76 Score=648.13 Aligned_cols=444 Identities=38% Similarity=0.609 Sum_probs=394.8
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
+..+||||||||||+||++.+|.++++.|..|++.+||+|+|.++ .+++|..| +++++||++|+++++.
T Consensus 18 ~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A----------ti~~~KrliG~~~~~~ 86 (595)
T PRK01433 18 RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK----------GLRSIKRLFGKTLKEI 86 (595)
T ss_pred CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh----------hHHHHHHHhCCCchhh
Confidence 457999999999999999999999999999999999999999865 58999987 7899999999987532
Q ss_pred hhhhc--cCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 191 DDESK--QVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 191 ~~~~~--~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
..... ..........++...+.. .++.++|+++.+++|++|++.++.+++.++.++|||||++|++.||+++++|+
T Consensus 87 ~~~~~~~~~~k~~~~~~~~~~~~~~--~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 87 LNTPALFSLVKDYLDVNSSELKLNF--ANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164 (595)
T ss_pred ccchhhHhhhhheeecCCCeeEEEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 11100 000011112223333433 36789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.||++++++++||+|||++|+.+......+||||+||||+|+|++++.++.++++++.|+..+||++||++|++|+..+
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~ 244 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHh
Confidence 99999999999999999999998776677899999999999999999999999999999999999999999999999988
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
+.... +.. .++.||++|+.||....... ..+.|||++|+++++|+++++.++++++
T Consensus 245 ~~~~~------~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~~itr~efe~l~~~l~~~~~~~i~~~ 300 (595)
T PRK01433 245 FDLPN------SID----TLQLAKKAKETLTYKDSFNN--------------DNISINKQTLEQLILPLVERTINIAQEC 300 (595)
T ss_pred cCCCC------CHH----HHHHHHHHHHhcCCCccccc--------------ceEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 74322 222 24469999999997664221 1589999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
|++++ ..+|+.|+||||+|++|+|++.|++.|+.++....||+++||+|||++|+.+++...++.+.|++|+++|++.
T Consensus 301 L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~slgi~~ 378 (595)
T PRK01433 301 LEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMEL 378 (595)
T ss_pred HhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCCccceEEEEecccceEEEe
Confidence 99998 5689999999999999999999999999888889999999999999999999887788999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+.+||+||+++|+++++.|++..|+|+.+.|.|||||+....+|..||+|.|+|+|+.|+|.++|+|+|++|.||+
T Consensus 379 ~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gi 458 (595)
T PRK01433 379 YGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458 (595)
T ss_pred cCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
|+|+|
T Consensus 459 l~V~a 463 (595)
T PRK01433 459 LSVSA 463 (595)
T ss_pred EEEEE
Confidence 99986
|
|
| >KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-77 Score=634.32 Aligned_cols=480 Identities=55% Similarity=0.866 Sum_probs=453.6
Q ss_pred cCCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 109 VVNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 109 ~~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
+..+.+||||||||+++++++.++..+++.|..|++.+||+++|.++ ++++|+.|..+...+|.++++++|+++|+.++
T Consensus 4 ~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~ 82 (620)
T KOG0101|consen 4 TPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFD 82 (620)
T ss_pred ccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCcccc
Confidence 34568999999999999999999999999999999999999999976 89999999999999999999999999999998
Q ss_pred --hhhhhhccCceEEEECCCCcEEEEeCCC--CeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHH
Q 047555 189 --EVDDESKQVSYRVVRDENGNVKLDCPAI--GKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTAT 264 (593)
Q Consensus 189 --~~~~~~~~~~~~v~~~~~g~~~i~~~~~--~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l 264 (593)
+++.+.+.|||.+..+..+.+.+.+..+ .+.++++++..+.|.++++.++.+++..+.++|+|||++|++.||+++
T Consensus 83 d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at 162 (620)
T KOG0101|consen 83 DPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAAT 162 (620)
T ss_pred chhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHH
Confidence 7788899999999976666777766554 456899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceEEEechhHHHHHHhccccC--CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 265 KDAGRIAGLEVLRIINEPTAASLAYGFERK--NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 265 ~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~--~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
.+|+..||++++++++||+|||++|+++.+ ...+++|+|+||||+|++++.+.++.+++.+..++.++||.+||+.+.
T Consensus 163 ~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 163 KDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 999999999999999999999999997764 367899999999999999999998988999999999999999999999
Q ss_pred HHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHH
Q 047555 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLK 422 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~ 422 (593)
+|+..+|+++++.++..+++++++|+.+||++|+.||....+.+.++++....+ +...|+|.+|++++.+++..+.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d----~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGID----FYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhcccc----ccceeehhhhhhhhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876544 7789999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh-CCCCCCCCCChhHHHhHHHHHhhhhcCC----CCceEEE
Q 047555 423 KPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT-GKDPNVTVNPDEVVALGAAVQGGVLAGD----VSDIVLL 497 (593)
Q Consensus 423 ~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~-g~~v~~~~~p~~aVA~GAal~a~~l~~~----~~~~~~~ 497 (593)
+++..+|.++++...+|+.|+||||++++|.++..+++.| +.....+.||+++||+||+++|+.+.+. ..+++++
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 9999999999999999999999999999999999999999 5678889999999999999999999873 3688999
Q ss_pred ecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeE
Q 047555 498 DVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQI 577 (593)
Q Consensus 498 ~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i 577 (593)
|+.|+++|+++.++.|.++|++|+.+|+++.++|++..|+|+.+.|.|||||+.+.++|.++|.|.|.|||++|+|+++|
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~I 478 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 478 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCceEEEEc
Q 047555 578 EVKFDIDANGILSVTA 593 (593)
Q Consensus 578 ~v~f~~d~~g~l~v~a 593 (593)
+++|++|.+|+|.|+|
T Consensus 479 evtfdiD~ngiL~Vta 494 (620)
T KOG0101|consen 479 EVTFDIDANGILNVTA 494 (620)
T ss_pred eEEEecCCCcEEEEee
Confidence 9999999999999986
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-76 Score=645.14 Aligned_cols=459 Identities=66% Similarity=0.998 Sum_probs=436.0
Q ss_pred CCeEEEEEcCccceEEEEEECC-eeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCch
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGG-KPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 189 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g-~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~ 189 (593)
...+||||||||||+||+++++ .+.++.|..|.+.+||+|+|.+++++++|..|+.+...+|.++++.+|+++|+..
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~-- 81 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGS-- 81 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCC--
Confidence 4579999999999999999988 7999999999999999999998878999999999999999999999999999861
Q ss_pred hhhhhccCceEEEECCCCc-EEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 190 VDDESKQVSYRVVRDENGN-VKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~-~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.+. ..+.+. ++.++++++.+++|++|++.++.+++..+..+|||||++|++.||+++++|+
T Consensus 82 ----------------~~~~~~~~~~--~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~ 143 (579)
T COG0443 82 ----------------NGLKISVEVD--GKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAA 143 (579)
T ss_pred ----------------CCCcceeeeC--CeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHH
Confidence 111 122222 5789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.||++++++++||+|||++|+.+...+..|+|||+||||||+|++++.++.++++++.++.++||++||.+|.+|+..+
T Consensus 144 ~iaGl~vlrlinEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~ 223 (579)
T COG0443 144 RIAGLNVLRLINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVME 223 (579)
T ss_pred HHcCCCeEEEecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHH
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
|+.+.+.++..++..+.+|+.+||++|+.||...+..+.++++..+ .++...|+|++||+++.+++.++...+.++
T Consensus 224 f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~~~~a 299 (579)
T COG0443 224 FKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEPVEQA 299 (579)
T ss_pred hhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999989999999999999999999999999999999998876544 457789999999999999999999999999
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEe
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLET 508 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~ 508 (593)
+.+++++..+|+.|+|+||++++|.+++.++++|+.++....||+++||.|||++|+.+++..++++++|+.|+++|++.
T Consensus 300 l~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plslgie~ 379 (579)
T COG0443 300 LKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIET 379 (579)
T ss_pred HHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred eCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCce
Q 047555 509 LGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGI 588 (593)
Q Consensus 509 ~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~ 588 (593)
.++.+..++++++.+|.++...|++..|+|..+.+.+++|++.+..+|+.+|.|.+.++|+.|+|.++|+|+|++|.||+
T Consensus 380 ~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD~~gi 459 (579)
T COG0443 380 LGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGI 459 (579)
T ss_pred CcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEc
Q 047555 589 LSVTA 593 (593)
Q Consensus 589 l~v~a 593 (593)
+.|+|
T Consensus 460 ~~v~a 464 (579)
T COG0443 460 LNVTA 464 (579)
T ss_pred eEeee
Confidence 99985
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-75 Score=655.53 Aligned_cols=476 Identities=52% Similarity=0.854 Sum_probs=430.2
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--hhh
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--EVD 191 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~~~ 191 (593)
||||||||+|++||++.++.++++.|..|++++||+|+|.++ ++++|..|......+|.++++++|++||+.++ .++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999999977 89999999999999999999999999999876 577
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCe--eeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGK--QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGR 269 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~--~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~ 269 (593)
.+.+.++|.+..+++|...+.+...+. .++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 788899999999989988887765554 799999999999999999999999999999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhccccCC-CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 270 IAGLEVLRIINEPTAASLAYGFERKN-NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~~~~-~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
.||++++.+++||+|||++|...... ++.+||||+||||+|++++++.++.+++++..++..+||.+||+.|++++.++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccccccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 99999999999999999999877554 88999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC--ceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL--TQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVE 426 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~--~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 426 (593)
++.+.+.+...+++.+.+|+.+||++|+.||.. ....+.++.+.. + ..++++.|+|++|+++++|+++++.++++
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~--~-~~~~~~~itr~~fe~l~~~~~~~~~~~i~ 316 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYD--D-GEDFSITITREEFEELCEPLLERIIEPIE 316 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEET--T-TEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc--c-ccccccccccceecccccccccccccccc
Confidence 999988888889999999999999999999994 445555543332 1 25789999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC--CCCceEEEecccccc
Q 047555 427 TALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG--DVSDIVLLDVTPLSI 504 (593)
Q Consensus 427 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~--~~~~~~~~~~~~~s~ 504 (593)
++|++++++..+|+.|+|+||+|++|+|++.|++.|+..+....||++|||.|||++|+.+++ ...++.+.|++|++|
T Consensus 317 ~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 317 KALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSEE
T ss_pred cccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhccccccccccccccccccc
Confidence 999999998889999999999999999999999999988888999999999999999999987 567889999999999
Q ss_pred eEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEEC
Q 047555 505 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 584 (593)
Q Consensus 505 gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d 584 (593)
|++..++.+..++++|+++|...+..|.+..++|+.+.|.||||+.....+|..||++.+.++++.++|.++|+|+|++|
T Consensus 397 ~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~ld 476 (602)
T PF00012_consen 397 GIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFELD 476 (602)
T ss_dssp EEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEEE
T ss_pred cccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEeee
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred CCceEEEEc
Q 047555 585 ANGILSVTA 593 (593)
Q Consensus 585 ~~g~l~v~a 593 (593)
.+|+|+|++
T Consensus 477 ~~Gil~V~~ 485 (602)
T PF00012_consen 477 ENGILSVEA 485 (602)
T ss_dssp TTSEEEEEE
T ss_pred eeeehhhhh
Confidence 999999975
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=506.07 Aligned_cols=471 Identities=34% Similarity=0.574 Sum_probs=435.5
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--hh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--EV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~~ 190 (593)
.++|||||..+|.+|++..+..+++.|+.++|.+|++|+|.+. .|++|.+|..+...++.+++..+||++|+.+. ++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 3899999999999999999999999999999999999999865 89999999999999999999999999999998 78
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCe--eeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGK--QFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~--~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
+.+.+.+|+.++.+.||.+.+.+...|. .+++++++++||.+|++.+++.+..++.++||+||++|++.||+.+.+|+
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 8899999999999999999888766544 59999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccC-------CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERK-------NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRV 341 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~-------~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l 341 (593)
..||+..+++++|-+|+|++|+.... ++.+++++|+|.+.+.++++.+..+.++++++.++..+||.+||+.|
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L 240 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEAL 240 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHH
Confidence 99999999999999999999987643 25779999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHH
Q 047555 342 VDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRL 421 (593)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i 421 (593)
.+|+..+|+.+++++...++++..||+.+||+.|+.||.+.....+++++..+.+ .+..|+|++||+++.|+++++
T Consensus 241 ~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~d----vs~~i~ReEfEel~~plL~rv 316 (727)
T KOG0103|consen 241 IDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKD----VSSKIKREEFEELSAPLLERV 316 (727)
T ss_pred HHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecch----hhhhccHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999888899998877654 678899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC--CCCceEEEec
Q 047555 422 KKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG--DVSDIVLLDV 499 (593)
Q Consensus 422 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~--~~~~~~~~~~ 499 (593)
...+.++|++++++..||+.|.+|||++++|.|++.|.+.||.+..++.|.++|||+|||+++++++. ++.++.+.|+
T Consensus 317 ~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di 396 (727)
T KOG0103|consen 317 EVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDI 396 (727)
T ss_pred hHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999996 6778999999
Q ss_pred ccccceEEee----C-CEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecC-cccccCCceeeEEEEeCCCCCCCC
Q 047555 500 TPLSIGLETL----G-GVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGE-REFVRDNKSLGSFRLDGIPPAPRG 573 (593)
Q Consensus 500 ~~~s~gi~~~----~-~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~-~~~~~~~~~lg~~~l~~i~~~~~g 573 (593)
.|+++.+++. + +....+||+|.++|..+..+|.... .+.+.++++. ..++.....|+++.+.++.+...|
T Consensus 397 ~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~g 472 (727)
T KOG0103|consen 397 VPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDG 472 (727)
T ss_pred cceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEecccccCccc
Confidence 9999988863 2 4556799999999999988988765 5788887776 445546678999999998887774
Q ss_pred -cCeEEEEEEECCCceEEEE
Q 047555 574 -VPQIEVKFDIDANGILSVT 592 (593)
Q Consensus 574 -~~~i~v~f~~d~~g~l~v~ 592 (593)
..+++|+..++.+|+.+|.
T Consensus 473 e~skVKvkvr~n~~Gi~~i~ 492 (727)
T KOG0103|consen 473 EFSKVKVKVRLNEHGIDTIE 492 (727)
T ss_pred cccceeEEEEEcCccceeee
Confidence 6689999999999999875
|
|
| >KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-55 Score=456.98 Aligned_cols=468 Identities=30% Similarity=0.507 Sum_probs=401.6
Q ss_pred CCeEEEEEcCccceEEEEEECCee-EEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc-
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKP-TIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~-~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~- 188 (593)
...|++||+|+.+++|++...|-| +|+.|...+|++|++|+|. +++|+||++|.....++|..++..++.+||+...
T Consensus 21 ~~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~ 99 (902)
T KOG0104|consen 21 ALAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDD 99 (902)
T ss_pred hhhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCC
Confidence 357899999999999999999877 7889999999999999997 4599999999999999999999999999999987
Q ss_pred -hhhhhhccCce-EEEECC-CCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 047555 189 -EVDDESKQVSY-RVVRDE-NGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATK 265 (593)
Q Consensus 189 -~~~~~~~~~~~-~v~~~~-~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~ 265 (593)
.++...+.+|+ .++.++ .+.+.+.+.. ...|++|++++|+|.+.+..++.+...++.++|||||.+|++.+|+++.
T Consensus 100 ~~v~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all 178 (902)
T KOG0104|consen 100 PTVDLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALL 178 (902)
T ss_pred cHHHHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHH
Confidence 35556666665 566664 4566666553 4679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEechhHHHHHHhccccC-----CCceEEEEeeCCceEEEEEEEEc----------CCEEEEEEecCCC
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFERK-----NNETILVFDLGGGTFDVSVLEVG----------DGVFEVLSTSGDT 330 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~~-----~~~~vlVvD~GggT~Dvsv~~~~----------~~~~~vl~~~~~~ 330 (593)
+|+++||++++.+|++-.|+|+.|+..+. ...+++|+|||+|.|.++++.+. ...+++++.+.+.
T Consensus 179 ~Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~ 258 (902)
T KOG0104|consen 179 QAAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDR 258 (902)
T ss_pred HHHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCC
Confidence 99999999999999999999999998753 37899999999999999999874 2478999999999
Q ss_pred CccHHHHHHHHHHHHHHHhhhhhC--CCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHH
Q 047555 331 HLGGDDFDKRVVDWLAENFKRDEG--VVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRA 408 (593)
Q Consensus 331 ~lGG~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~ 408 (593)
.+||..|+.+|.+||.+.|.+..+ .++..+++++.+|.++|+++|..||.+..+.+.++.+..+. ++...|||+
T Consensus 259 tLGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddi----DFr~kvTRe 334 (902)
T KOG0104|consen 259 TLGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDI----DFRLKVTRE 334 (902)
T ss_pred ccchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhcc----ccccceeHH
Confidence 999999999999999999998764 46778899999999999999999999999999888776654 488999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-CCCCCCCCChhHHHhHHHHHhhhh
Q 047555 409 KFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-KDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 409 ~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
+||++|.++..++..+|+++|..+.++..+|+.|+|.||++|+|.||+.|.+..| .++....|.++|++.||+++|+.|
T Consensus 335 ~fEelc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~L 414 (902)
T KOG0104|consen 335 EFEELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHL 414 (902)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999997 467788999999999999999999
Q ss_pred cC--CCCceEEEecccccceEEeeCC--------EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCc
Q 047555 488 AG--DVSDIVLLDVTPLSIGLETLGG--------VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNK 557 (593)
Q Consensus 488 ~~--~~~~~~~~~~~~~s~gi~~~~~--------~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~ 557 (593)
+. +++++.+.|.+.++|-++..+. .-..+|.++.++|..+..+|+...| .+.+.+-.+.-. .
T Consensus 415 SksFKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysd---df~~~~n~~~~~-----~ 486 (902)
T KOG0104|consen 415 SKSFKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSD---DFPFNINYGDLG-----Q 486 (902)
T ss_pred cccccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCC---ccccccchhhhc-----c
Confidence 86 5678999999999988876543 2235899999999988666654332 233333222110 2
Q ss_pred eeeEEEEeCCCCC----CC---CcCeEEEEEEECCCceEEEE
Q 047555 558 SLGSFRLDGIPPA----PR---GVPQIEVKFDIDANGILSVT 592 (593)
Q Consensus 558 ~lg~~~l~~i~~~----~~---g~~~i~v~f~~d~~g~l~v~ 592 (593)
-+.++.+.|+... +. ...-|++.|.+|.+|++.|+
T Consensus 487 nl~~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~ 528 (902)
T KOG0104|consen 487 NLTTVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVS 528 (902)
T ss_pred CccEEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEe
Confidence 2447888877643 21 13458999999999999875
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-52 Score=440.89 Aligned_cols=338 Identities=29% Similarity=0.417 Sum_probs=288.8
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEE----------------------------------------
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT---------------------------------------- 153 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~---------------------------------------- 153 (593)
++|||||||||+||++++|.++++.+..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6899999999999999999999999999999999999995
Q ss_pred eCCcEEecHHHHHhhhhCCCch--hhhhhhhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHH
Q 047555 154 KIGDRLVGQIAKRQAVVNPENT--FFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231 (593)
Q Consensus 154 ~~~~~~~G~~A~~~~~~~~~~~--i~~~K~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~ 231 (593)
++++.++|.+|+.+...+|+.+ +..+|++||...- .. +....++++++.+|+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~----------------~~----------~~~~~~e~l~a~iL~ 135 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGL----------------KP----------QQVALFEDLVCAMML 135 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCC----------------Cc----------cceeCHHHHHHHHHH
Confidence 3456789999999999999988 6799999997520 00 122348999999999
Q ss_pred HHHHHHHHHhCCCcCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEe
Q 047555 232 KLVDDASKFLNDKITKAVVTVPAYFN-----DSQRTA---TKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFD 303 (593)
Q Consensus 232 ~l~~~a~~~l~~~~~~~viTVPa~~~-----~~~r~~---l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD 303 (593)
+|++.++.+++.++.++|||||++|+ +.||++ |++|++.||++++.+++||+|||++|......+..+||+|
T Consensus 136 ~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D 215 (450)
T PRK11678 136 HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVD 215 (450)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEE
Confidence 99999999999999999999999998 777665 7999999999999999999999999988777789999999
Q ss_pred eCCceEEEEEEEEcCC-------EEEEEEecCCCCccHHHHHHHHH-HHHHHHhhhh----hCCCC--------------
Q 047555 304 LGGGTFDVSVLEVGDG-------VFEVLSTSGDTHLGGDDFDKRVV-DWLAENFKRD----EGVVL-------------- 357 (593)
Q Consensus 304 ~GggT~Dvsv~~~~~~-------~~~vl~~~~~~~lGG~~id~~l~-~~l~~~~~~~----~~~~~-------------- 357 (593)
+||||+|+|++++.+. ..+++++.| ..+||++||+.|+ +++...|+.. .+.++
T Consensus 216 ~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~~i 294 (450)
T PRK11678 216 IGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAINDV 294 (450)
T ss_pred eCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhhcc
Confidence 9999999999998753 367888887 6899999999997 6777776421 11100
Q ss_pred ---------------------cCCHHHH------------HHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEE
Q 047555 358 ---------------------LNDKQAL------------QRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETT 404 (593)
Q Consensus 358 ---------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~ 404 (593)
..+++.+ .+|+.+||++|+.||....+.+.++.+. .++...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~------~~~~~~ 368 (450)
T PRK11678 295 PAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS------DGLATE 368 (450)
T ss_pred chhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC------CCccee
Confidence 0123333 3688999999999999999988887543 236789
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHh
Q 047555 405 LTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 405 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a 484 (593)
|+|++|+++++++++++.++++++|+++++. ++.|+||||+|++|+|++.|++.||.......+|.++||.|+|++|
T Consensus 369 ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~~a 445 (450)
T PRK11678 369 ISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLARWA 445 (450)
T ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHHHH
Confidence 9999999999999999999999999999865 5889999999999999999999998766678899999999999998
Q ss_pred hhh
Q 047555 485 GVL 487 (593)
Q Consensus 485 ~~l 487 (593)
..+
T Consensus 446 ~~~ 448 (450)
T PRK11678 446 QVV 448 (450)
T ss_pred Hhh
Confidence 753
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=330.16 Aligned_cols=310 Identities=25% Similarity=0.380 Sum_probs=241.8
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC-cE-EecHHHHHhhhhCCCchhhhhhhhhCCCCchhhh
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG-DR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDD 192 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~-~~-~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~ 192 (593)
+||||||++++++.. ++..++. .||+|+++.++ .. .+|++|+......|.+..
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~---------------- 60 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIV---------------- 60 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEE----------------
Confidence 899999999999875 4555554 59999999643 34 599999765433333321
Q ss_pred hhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC
Q 047555 193 ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAG 272 (593)
Q Consensus 193 ~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AG 272 (593)
+..|.....+...+....+|+++++.+..........+++|||++|++.+|+++++|++.||
T Consensus 61 ------------------~~~pi~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 61 ------------------AIRPLRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred ------------------EEccCCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 11122233455667888888888865543222233469999999999999999999999999
Q ss_pred CceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhh
Q 047555 273 LEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352 (593)
Q Consensus 273 l~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~ 352 (593)
++.+.+++||+|||++|+.+..++..++|+|+||||||+++++.+... ..++..+||++||+.|.+++..+++..
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiGggttdvsvv~~g~~~-----~~~~~~lGG~did~~i~~~l~~~~~~~ 197 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIGGGTTDIAVLSLGGIV-----TSSSIKVAGDKFDEAIIRYIRKKYKLL 197 (336)
T ss_pred CCceEecccHHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEEeCCEE-----EeCCcCCHHHHHHHHHHHHHHHHhchh
Confidence 999999999999999999877677889999999999999999987432 356789999999999999999877543
Q ss_pred hCCCCcCCHHHHHHHHHHHHHHhhhcCCCc----eeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLT----QANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 353 ~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
.+ .+.||++|+.++... ...+.+. ..+........+.|++++|++++++.++++.+.+++.
T Consensus 198 ~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~--g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~ 262 (336)
T PRK13928 198 IG-------------ERTAEEIKIKIGTAFPGAREEEMEIR--GRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSV 262 (336)
T ss_pred cC-------------HHHHHHHHHHhcccccccCCcEEEEe--cccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 357999999987542 1222221 1111112245689999999999999999999999999
Q ss_pred HHHcC--CCCCCCC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 429 LRDAK--LSFNDLD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 429 l~~~~--~~~~~i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
|+.++ +....++ .|+|+||+|++|+++++|++.|+.++....||+++||+||++++..+
T Consensus 263 l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 263 LERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 99986 3345566 79999999999999999999999999889999999999999998764
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=325.81 Aligned_cols=308 Identities=25% Similarity=0.345 Sum_probs=243.8
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCc--EEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~--~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
.+||||||+++.+ +.+++..++ | .||+|+++.++. ..+|.+|+....++|.+...
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~~~-~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~-------------- 62 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGIIL-N------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVA-------------- 62 (335)
T ss_pred eEEEEcccccEEE--EECCCcEEe-c------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEE--------------
Confidence 5899999999985 445555443 4 499999986544 46999998876666655422
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcC--cEEEEeCCCCCHHHHHHHHHHHH
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKIT--KAVVTVPAYFNDSQRTATKDAGR 269 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~--~~viTVPa~~~~~~r~~l~~Aa~ 269 (593)
..|.....+...++++.+|+++++.+...++.... .+|||||++|++.+|+++.+|++
T Consensus 63 --------------------~~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~ 122 (335)
T PRK13929 63 --------------------VRPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVK 122 (335)
T ss_pred --------------------EecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 11112233445689999999999988777765443 79999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHh
Q 047555 270 IAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENF 349 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~ 349 (593)
.||++.+.+++||.|||++++.+......++|+|+|+||+|+++++.++.. ..++..+||.+||+.|.+++.+.+
T Consensus 123 ~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvvDiG~gtt~v~vi~~~~~~-----~~~~~~~GG~~id~~l~~~l~~~~ 197 (335)
T PRK13929 123 NCGAKNVHLIEEPVAAAIGADLPVDEPVANVVVDIGGGTTEVAIISFGGVV-----SCHSIRIGGDQLDEDIVSFVRKKY 197 (335)
T ss_pred HcCCCeeEeecCHHHHHHhcCCCcCCCceEEEEEeCCCeEEEEEEEeCCEE-----EecCcCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998877677889999999999999999876533 355678999999999999998765
Q ss_pred hhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc----eeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHH
Q 047555 350 KRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT----QANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPV 425 (593)
Q Consensus 350 ~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i 425 (593)
+...+ .+.||++|+.++... ...+.+.. .+........+.+++++|++++.+++.++.+.|
T Consensus 198 ~~~~~-------------~~~AE~iK~~l~~~~~~~~~~~~~v~g--~~~~~~~p~~i~i~~~~~~~~i~~~l~~i~~~i 262 (335)
T PRK13929 198 NLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRG--RDLVTGLPKTITLESKEIQGAMRESLLHILEAI 262 (335)
T ss_pred CcCcC-------------HHHHHHHHHHHcCCCCCCCCceEEEeC--CccCCCCCeEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 42221 368999999998632 11222211 111111235789999999999999999999999
Q ss_pred HHHHHHcCCC--CCCCC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHh
Q 047555 426 ETALRDAKLS--FNDLD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 426 ~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a 484 (593)
.+.|+++... ...++ +|+|+||+|++|+++++|++.|+.++....||+++|++||+..-
T Consensus 263 ~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 263 RATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 9999998644 34566 69999999999999999999999999888999999999999873
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=312.40 Aligned_cols=309 Identities=24% Similarity=0.350 Sum_probs=233.0
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC----Cc--EEecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI----GD--RLVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~----~~--~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
+||||||+||.++.... ..++. .||+|+|.++ .. ..+|++|+....+.|++.
T Consensus 5 ~giDlGt~~s~i~~~~~--~~~~~-------~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~------------- 62 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGR--GIVLN-------EPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNI------------- 62 (333)
T ss_pred eEEecCcceEEEEECCC--CEEEe-------cCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCE-------------
Confidence 89999999999988533 33442 6999999855 22 569999966543333322
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.+..|.....+...+.+..+|++++.............+++|||++|+..+|+++++++
T Consensus 63 ---------------------~~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~~ 121 (333)
T TIGR00904 63 ---------------------VAIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKESA 121 (333)
T ss_pred ---------------------EEEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 12222223344455666777777766544322222237999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+.+|++.+.+++||+|||++|+........++|+|+||||+|+++++.++.. ..++..+||++||+.|.+++.++
T Consensus 122 ~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~gttdvs~v~~~~~~-----~~~~~~lGG~did~~l~~~l~~~ 196 (333)
T TIGR00904 122 LSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGGGTTEVAVISLGGIV-----VSRSIRVGGDEFDEAIINYIRRT 196 (333)
T ss_pred HHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCCCeEEEEEEEeCCEE-----ecCCccchHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876667789999999999999999887533 24567899999999999999876
Q ss_pred hhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce-----eeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 047555 349 FKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ-----ANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKK 423 (593)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~ 423 (593)
+..... ++.||++|+.++.... ..+.+.. .+..........|+++++.+++.+.++++.+
T Consensus 197 ~~~~~~-------------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 261 (333)
T TIGR00904 197 YNLLIG-------------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQEPVNQIVE 261 (333)
T ss_pred hcccCC-------------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHHHHHHHHH
Confidence 542221 4679999999875322 1222211 1100111234689999999999999999999
Q ss_pred HHHHHHHHcCCCC-CCC-C-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 424 PVETALRDAKLSF-NDL-D-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 424 ~i~~~l~~~~~~~-~~i-~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
.+.+.++.+.... .++ + .|+|+||+|++|+++++|++.|+.++....||+++||.||++++..
T Consensus 262 ~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 262 AVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999876442 233 3 6999999999999999999999999999999999999999998654
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=313.41 Aligned_cols=310 Identities=25% Similarity=0.364 Sum_probs=234.3
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC-Cc-EEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI-GD-RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
..|||||||++++++...+ ..++. +||+|++.++ ++ .++|++|+.....+|.+.
T Consensus 6 ~~igIDlGt~~~~i~~~~~--~~~~~-------~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~--------------- 61 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGK--GIVLN-------EPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNI--------------- 61 (334)
T ss_pred ceeEEEcCcceEEEEECCC--cEEEe-------cCCEEEEECCCCeEEEecHHHHHHhhcCCCCE---------------
Confidence 3589999999999855433 23332 7999999865 33 479999977654444332
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
.+..+.....+...+.+..+|++++...... ......+++|+|++|++.+|+++++|++.
T Consensus 62 -------------------~~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~-~~~~~~~vi~vP~~~~~~~r~~~~~a~~~ 121 (334)
T PRK13927 62 -------------------VAIRPMKDGVIADFDVTEKMLKYFIKKVHKN-FRPSPRVVICVPSGITEVERRAVRESALG 121 (334)
T ss_pred -------------------EEEecCCCCeecCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1111112223334455677777776654433 22224799999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
+|++.+.+++||+|||++++.+......++|||+||||||+++++.++.. ..+...+||++||+.|.+++.+++.
T Consensus 122 ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDiGggttdvs~v~~~~~~-----~~~~~~lGG~~id~~l~~~l~~~~~ 196 (334)
T PRK13927 122 AGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDIGGGTTEVAVISLGGIV-----YSKSVRVGGDKFDEAIINYVRRNYN 196 (334)
T ss_pred cCCCeeccCCChHHHHHHcCCcccCCCeEEEEEeCCCeEEEEEEecCCeE-----eeCCcCChHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999877667789999999999999999877543 2455789999999999999987664
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce----eeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ----ANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVE 426 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 426 (593)
.... .+.+|++|+.++.... ..+.+.. .+........+.|++++|++++.+.++++.+.|.
T Consensus 197 ~~~~-------------~~~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~ 261 (334)
T PRK13927 197 LLIG-------------ERTAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLSAIVEAVK 261 (334)
T ss_pred cCcC-------------HHHHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHH
Confidence 3221 3578999999885432 2222211 1111112347899999999999999999999999
Q ss_pred HHHHHcCCCC-CC-CC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 427 TALRDAKLSF-ND-LD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 427 ~~l~~~~~~~-~~-i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
++|+++.... .+ ++ .|+|+||+|++|+++++|++.|+.++....+|+++||+||++++..
T Consensus 262 ~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 262 VALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 9999886431 23 33 5999999999999999999999999998999999999999999765
|
|
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=306.31 Aligned_cols=311 Identities=25% Similarity=0.354 Sum_probs=237.0
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC-Cc-EEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI-GD-RLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
..|||||||++++++++.++ .++. +||+|++.++ ++ .++|++|+......|.+.
T Consensus 9 ~~vgiDlGt~~t~i~~~~~~--~~~~-------~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~--------------- 64 (335)
T PRK13930 9 KDIGIDLGTANTLVYVKGKG--IVLN-------EPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNI--------------- 64 (335)
T ss_pred cceEEEcCCCcEEEEECCCC--EEEe-------cCCEEEEECCCCeEEEEcHHHHHhhhcCCCCe---------------
Confidence 34999999999999987333 2331 5999999853 33 579999976643333221
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
.+..+.....+...+.+..+|+++++............+++|+|++|+..+|+.+.++++.
T Consensus 65 -------------------~~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~ 125 (335)
T PRK13930 65 -------------------EAIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEH 125 (335)
T ss_pred -------------------EEeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence 1111222233344567888888888766554344456899999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
+|++.+.+++||+|||++++........++|||+|+||||++++..+... ..+...+||.+||+.|.+++.++++
T Consensus 126 ~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~gttdvs~v~~g~~~-----~~~~~~lGG~~id~~l~~~l~~~~~ 200 (335)
T PRK13930 126 AGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGGGTTEVAVISLGGIV-----YSESIRVAGDEMDEAIVQYVRRKYN 200 (335)
T ss_pred cCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCCCeEEEEEEEeCCEE-----eecCcCchhHHHHHHHHHHHHHHhC
Confidence 99999999999999999998876666678999999999999999877533 2566899999999999999988754
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee----eEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA----NISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVE 426 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~ 426 (593)
.... .+.||++|+.++..... .+.+.. .+........+.|++++|++++.+.++++.+.+.
T Consensus 201 ~~~~-------------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~ 265 (335)
T PRK13930 201 LLIG-------------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQIVEAVK 265 (335)
T ss_pred CCCC-------------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHHHHHHH
Confidence 2211 35799999999754321 222211 1111112346889999999999999999999999
Q ss_pred HHHHHcCCC--CCCCC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 427 TALRDAKLS--FNDLD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 427 ~~l~~~~~~--~~~i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
+.++++... ...++ .|+|+||+|++|+++++|++.|+.++....+|+++||.||++.+..
T Consensus 266 ~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 266 SVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 999987533 12235 4999999999999999999999999988899999999999999764
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=297.28 Aligned_cols=312 Identities=28% Similarity=0.402 Sum_probs=226.7
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC-cE-EecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG-DR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~-~~-~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
.-+||||||+++.++.. ++..++. .||+|+|+.+. +. .+|++|+. ++|+..
T Consensus 2 ~~igIDLGT~~t~i~~~--~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~---------------m~gktp--- 54 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVK--GKGIVLN-------EPSVVAYDKDTGKILAVGDEAKA---------------MLGKTP--- 54 (326)
T ss_dssp SEEEEEE-SSEEEEEET--TTEEEEE-------EES-EEEETTT--EEEESHHHHT---------------TTTS-G---
T ss_pred CceEEecCcccEEEEEC--CCCEEEe-------cCcEEEEECCCCeEEEEhHHHHH---------------HhhcCC---
Confidence 35899999999999553 3333332 49999999753 33 39999944 444431
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
..+.+..|..+..+...++...+|+++++.+.......-.+++++||+..++.+|+++.+++..
T Consensus 55 ----------------~~i~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~ 118 (326)
T PF06723_consen 55 ----------------DNIEVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQ 118 (326)
T ss_dssp ----------------TTEEEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHH
T ss_pred ----------------CccEEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 1223333444556666788889999998877653222335799999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
+|...+.+++||.|||+..+.+..+....||+|+||||||++++..++... +....+||++||+++.+|++++|+
T Consensus 119 aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDIG~GtTdiavislggiv~-----s~si~~gG~~~DeaI~~~ir~~y~ 193 (326)
T PF06723_consen 119 AGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDIGGGTTDIAVISLGGIVA-----SRSIRIGGDDIDEAIIRYIREKYN 193 (326)
T ss_dssp TT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE-SS-EEEEEEETTEEEE-----EEEES-SHHHHHHHHHHHHHHHHS
T ss_pred cCCCEEEEecchHHHHhcCCCCCCCCCceEEEEECCCeEEEEEEECCCEEE-----EEEEEecCcchhHHHHHHHHHhhC
Confidence 999999999999999999999988889999999999999999998665332 334689999999999999999987
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee--eEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA--NISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~--~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
-..+ .+.||++|++++..... ...+.....+.......++.|+.+++.+++++.+.+|.+.|+++
T Consensus 194 l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~ 260 (326)
T PF06723_consen 194 LLIG-------------ERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEV 260 (326)
T ss_dssp EE---------------HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccC-------------HHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655 77999999998864321 11233333333334456799999999999999999999999999
Q ss_pred HHHcCCC-CCCC--CeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhh
Q 047555 429 LRDAKLS-FNDL--DEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 429 l~~~~~~-~~~i--~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
|++.... ..|| ++|+|+||++++++|.++|++.++.++....+|.++|+.||.....
T Consensus 261 Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 261 LEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 9986544 2244 5799999999999999999999999999999999999999987654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=258.77 Aligned_cols=315 Identities=27% Similarity=0.382 Sum_probs=248.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC--Cc-E-EecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI--GD-R-LVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~--~~-~-~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
.-+|||+||.|+.|+.- ++. ++.+ -||+|++..+ .. . .+|.+| |+++|+..
T Consensus 7 ~diGIDLGTanTlV~~k--~kg-IVl~------ePSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP- 61 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--GKG-IVLN------EPSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTP- 61 (342)
T ss_pred ccceeeecccceEEEEc--Cce-EEec------CceEEEEeecCCCceEEEehHHH---------------HHHhccCC-
Confidence 47899999999999875 222 4444 4999999873 22 2 389998 66777752
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhC-CCcCcEEEEeCCCCCHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN-DKITKAVVTVPAYFNDSQRTATKDA 267 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~-~~~~~~viTVPa~~~~~~r~~l~~A 267 (593)
+++....|..+..+..-++...+|+++++....... .....++++||..-++.+|+++++|
T Consensus 62 ------------------~ni~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea 123 (342)
T COG1077 62 ------------------GNIVAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEA 123 (342)
T ss_pred ------------------CCceEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHH
Confidence 222333344566667778888899999887664322 3334699999999999999999999
Q ss_pred HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q 047555 268 GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347 (593)
Q Consensus 268 a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~ 347 (593)
++.||...+.++.||.|||+........+..-+|||+||||||++++.+++... +....+||+.||+.+.+|+++
T Consensus 124 ~~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvvDIGgGTTevaVISlggiv~-----~~Sirv~GD~~De~Ii~yvr~ 198 (342)
T COG1077 124 AESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVVDIGGGTTEVAVISLGGIVS-----SSSVRVGGDKMDEAIIVYVRK 198 (342)
T ss_pred HHhccCceEEEeccHHHHHhcCCCcccCCCCCEEEEeCCCceeEEEEEecCEEE-----EeeEEEecchhhHHHHHHHHH
Confidence 999999999999999999999999887777889999999999999999987653 555789999999999999999
Q ss_pred HhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee----eEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 047555 348 NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA----NISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKK 423 (593)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~ 423 (593)
+|+--.+ .+.+|++|.+....-.. ...++....+.-..-.-.++++.+++.+.+++.++.|.+
T Consensus 199 ~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~v~~Ive 265 (342)
T COG1077 199 KYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVE 265 (342)
T ss_pred HhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHHHHHHHH
Confidence 9987766 55799999988754221 122222222222222345899999999999999999999
Q ss_pred HHHHHHHHcCCC-CCCC--CeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhc
Q 047555 424 PVETALRDAKLS-FNDL--DEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 424 ~i~~~l~~~~~~-~~~i--~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~ 488 (593)
.++..|++.... ..|| ..++|+||++.+..+.+.|++..+.++....+|..|||+|+.+....+.
T Consensus 266 air~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 266 AIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 999999996644 2333 3599999999999999999999999999999999999999987765543
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=249.74 Aligned_cols=205 Identities=22% Similarity=0.334 Sum_probs=176.8
Q ss_pred eeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCc
Q 047555 218 KQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNE 297 (593)
Q Consensus 218 ~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~ 297 (593)
..+..-+....+|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++.+.+++||.|++++|...
T Consensus 34 g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~----- 108 (239)
T TIGR02529 34 GIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK----- 108 (239)
T ss_pred CeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-----
Confidence 344566788999999999998888888899999999999999999999999999999999999999999998654
Q ss_pred eEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhh
Q 047555 298 TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKME 377 (593)
Q Consensus 298 ~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 377 (593)
..+|+|+||||+|+++++.+...+ ..+..+||++||+.|.+.+. ++ .++||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~G~i~~-----~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKKGKVIY-----SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEECCeEEE-----EEeeecchHHHHHHHHHHhC--------CC-----------HHHHHHHHHh
Confidence 259999999999999987554332 45678999999998875543 11 4689999987
Q ss_pred cCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHH
Q 047555 378 LSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQEL 457 (593)
Q Consensus 378 Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~ 457 (593)
+.. .+++.++++++++++.+.+++.|++. .++.|+|+||++++|+|++.
T Consensus 165 ~~~--------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~ 213 (239)
T TIGR02529 165 HKD--------------------------EEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADV 213 (239)
T ss_pred cCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHH
Confidence 541 34577899999999999999999864 46789999999999999999
Q ss_pred HHhHhCCCCCCCCCChhHHHhHHHH
Q 047555 458 VKKMTGKDPNVTVNPDEVVALGAAV 482 (593)
Q Consensus 458 l~~~~g~~v~~~~~p~~aVA~GAal 482 (593)
+++.|+.++....||++++|+||++
T Consensus 214 l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 214 FEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHhCCCcccCCCCCeehhheeec
Confidence 9999999999999999999999986
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=234.40 Aligned_cols=203 Identities=26% Similarity=0.390 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEE
Q 047555 222 AEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILV 301 (593)
Q Consensus 222 ~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlV 301 (593)
..+.....|+++++.++.+.+.++..++++||++|+..+++.+.++++.||++...+++||.|++.++..+ ..++
T Consensus 65 di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-----~~~v 139 (267)
T PRK15080 65 DFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-----NGAV 139 (267)
T ss_pred eHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-----CcEE
Confidence 35677889999999999888888889999999999999999999999999999999999999999987653 2599
Q ss_pred EeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC
Q 047555 302 FDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL 381 (593)
Q Consensus 302 vD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~ 381 (593)
+|+||||||+++++.+...+ .++..+||++||+.|.+++.-. .++||++|+.++
T Consensus 140 vDIGggtt~i~v~~~g~~~~-----~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~-- 193 (267)
T PRK15080 140 VDIGGGTTGISILKDGKVVY-----SADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK-- 193 (267)
T ss_pred EEeCCCcEEEEEEECCeEEE-----EecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC--
Confidence 99999999999987543322 3567999999999998775311 568889888742
Q ss_pred ceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhH
Q 047555 382 TQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM 461 (593)
Q Consensus 382 ~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~ 461 (593)
+++++.++++++++++.+.+++.++.. .++.|+|+||+|++|++++.+++.
T Consensus 194 ------------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 194 ------------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred ------------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 246788999999999999999999863 578999999999999999999999
Q ss_pred hCCCCCCCCCChhHHHhHHHHHh
Q 047555 462 TGKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 462 ~g~~v~~~~~p~~aVA~GAal~a 484 (593)
|+.++....+|++++|.|||+++
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999874
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=216.98 Aligned_cols=195 Identities=22% Similarity=0.364 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
....+.+.+|++.||++...++.||.|+|++++........++|+|+|+||||+++++.+...+ .....+||++|
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~~~-----~~~i~~GG~~i 231 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSIRY-----TKVIPIGGNHI 231 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEEEE-----EeeecchHHHH
Confidence 5567888999999999999999999999999876655577899999999999999997543222 34468999999
Q ss_pred HHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC------ceeeEEeccccccCCCCceeEEEecHHHHH
Q 047555 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL------TQANISLPFITATADGPKHIETTLTRAKFE 411 (593)
Q Consensus 338 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr~~~e 411 (593)
|+.+.+.+.. ..++||++|+.++.. ....+.++... ......+++++|+
T Consensus 232 t~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~is~~~l~ 286 (371)
T TIGR01174 232 TKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEEcHHHHH
Confidence 9988765421 167899999999863 23445554332 2355899999999
Q ss_pred HHHHHHHHHHHHHHH-HHHHHcCCCCCCCCe-EEEEeCCCChHhHHHHHHhHhCCCCCC------------CCCChhHHH
Q 047555 412 ELCSDLLDRLKKPVE-TALRDAKLSFNDLDE-VILVGGSTRIPAVQELVKKMTGKDPNV------------TVNPDEVVA 477 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-VvLvGG~s~~p~l~~~l~~~~g~~v~~------------~~~p~~aVA 477 (593)
+++++.++++.+.++ +.|++++.. .+++. |+|+||+|++|++++++++.|+.++.. ..+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998776 56766 999999999999999999999865321 237899999
Q ss_pred hHHHHH
Q 047555 478 LGAAVQ 483 (593)
Q Consensus 478 ~GAal~ 483 (593)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 998864
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-23 Score=219.72 Aligned_cols=197 Identities=19% Similarity=0.249 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHH
Q 047555 260 QRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 339 (593)
Q Consensus 260 ~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~ 339 (593)
..+.+.+|++.||++...++.||.|+|.+++.+...+..++|+|+||||||+++++.+... ......+||++|++
T Consensus 167 ~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l~-----~~~~i~~GG~~it~ 241 (420)
T PRK09472 167 MAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGALR-----HTKVIPYAGNVVTS 241 (420)
T ss_pred HHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEEE-----EEeeeechHHHHHH
Confidence 3445567999999999999999999999998776667889999999999999999843222 34557899999999
Q ss_pred HHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC------ceeeEEeccccccCCCCceeEEEecHHHHHHH
Q 047555 340 RVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL------TQANISLPFITATADGPKHIETTLTRAKFEEL 413 (593)
Q Consensus 340 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~ 413 (593)
.|.+.+.-. .+.||++|..+... ....+.++... +. ....+++.+|.++
T Consensus 242 dIa~~l~i~-------------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~----~~--~~~~i~~~~l~~i 296 (420)
T PRK09472 242 DIAYAFGTP-------------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVG----GR--PPRSLQRQTLAEV 296 (420)
T ss_pred HHHHHhCcC-------------------HHHHHHHHHhcceeccccCCCCceeEecCCC----CC--CCeEEcHHHHHHH
Confidence 987655311 56899999776532 22344444321 11 1257899999999
Q ss_pred HHHHHHHHHHHHHHHH-------HHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC------------CCCChh
Q 047555 414 CSDLLDRLKKPVETAL-------RDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV------------TVNPDE 474 (593)
Q Consensus 414 ~~~~~~~i~~~i~~~l-------~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~------------~~~p~~ 474 (593)
+++.++++.+.+++.+ .+.++....+++|+|+||++++|+|++++++.|+.++.. ..+|.+
T Consensus 297 i~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~ 376 (420)
T PRK09472 297 IEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYY 376 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHH
Confidence 9998888888776544 555666667899999999999999999999999855432 258999
Q ss_pred HHHhHHHHHhhh
Q 047555 475 VVALGAAVQGGV 486 (593)
Q Consensus 475 aVA~GAal~a~~ 486 (593)
+++.|+++|+..
T Consensus 377 ata~Gl~~~~~~ 388 (420)
T PRK09472 377 STAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=194.36 Aligned_cols=205 Identities=27% Similarity=0.414 Sum_probs=169.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecC
Q 047555 249 VVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSG 328 (593)
Q Consensus 249 viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~ 328 (593)
++|+|.. .-+.+.+|++++|+++..++.+|.|++.+.+.+..++..++++|+||||||+++++-+... +.+
T Consensus 159 vit~~~~----~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l~-----~~~ 229 (418)
T COG0849 159 VITGPKN----ILENLEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGALR-----YTG 229 (418)
T ss_pred EEEcchH----HHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEEE-----EEe
Confidence 5555543 5778999999999999999999999999999998889999999999999999999966433 356
Q ss_pred CCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce------eeEEeccccccCCCCceeE
Q 047555 329 DTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ------ANISLPFITATADGPKHIE 402 (593)
Q Consensus 329 ~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~~~~~~~~~~~~~~ 402 (593)
..++||++++..|..-|.-. .+.||+.|..+..... ..++++....+ ..
T Consensus 230 ~ipvgG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~------~~ 284 (418)
T COG0849 230 VIPVGGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGSD------IP 284 (418)
T ss_pred eEeeCccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCCc------cc
Confidence 68999999999998876654 5689999999875433 23444433221 25
Q ss_pred EEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC------------CC
Q 047555 403 TTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV------------TV 470 (593)
Q Consensus 403 ~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~------------~~ 470 (593)
..+++.++.+++++.+.++.++++..|++.+....-..+|+|+||++++|++.+..++.|+.++.. ..
T Consensus 285 ~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~ 364 (418)
T COG0849 285 RQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIAR 364 (418)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhcc
Confidence 689999999999999999999999999999987555689999999999999999999999754321 24
Q ss_pred CChhHHHhHHHHHhhhh
Q 047555 471 NPDEVVALGAAVQGGVL 487 (593)
Q Consensus 471 ~p~~aVA~GAal~a~~l 487 (593)
+|..+.+.|..+++...
T Consensus 365 ~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 365 NPAFSTAVGLLLYGALM 381 (418)
T ss_pred CchhhhhHHHHHHHhhc
Confidence 78999999999998864
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-19 Score=191.90 Aligned_cols=309 Identities=19% Similarity=0.187 Sum_probs=204.3
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC---------CcEEecHHHHHhhhhCCCchhhhhhhhhC
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI---------GDRLVGQIAKRQAVVNPENTFFSVKRFIG 184 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~K~~lg 184 (593)
.|.||+||.++++++..++.|..+ +||+++...+ ...++|++|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC--------------
Confidence 378999999999999977766655 5888877643 355678776432100
Q ss_pred CCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHH
Q 047555 185 RKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTAT 264 (593)
Q Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l 264 (593)
...+..|.....+...+.+..+|+++....... ...-..+++++|..++..+|+.+
T Consensus 59 -----------------------~~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r~~~ 114 (371)
T cd00012 59 -----------------------GLELIYPIEHGIVVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNREKT 114 (371)
T ss_pred -----------------------ceEEcccccCCEEeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHHHHH
Confidence 011222222334456677788888887643221 22235799999999998888888
Q ss_pred HHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 265 KDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 265 ~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
.+. ++..|++.+.++++|.+|+++++. .+.+|||+|+++|+++.+..+.. +........+||.++|+.|.+
T Consensus 115 ~e~lfe~~~~~~v~~~~~~~~a~~~~g~-----~~~lVVDiG~~~t~i~pv~~G~~---~~~~~~~~~~GG~~l~~~l~~ 186 (371)
T cd00012 115 TEIMFETFNVPALYVAIQAVLSLYASGR-----TTGLVVDSGDGVTHVVPVYDGYV---LPHAIKRLDLAGRDLTRYLKE 186 (371)
T ss_pred HHHhhccCCCCEEEEechHHHHHHhcCC-----CeEEEEECCCCeeEEEEEECCEE---chhhheeccccHHHHHHHHHH
Confidence 775 777999999999999999999875 57799999999999998875421 122234578999999999999
Q ss_pred HHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee---e-----EEeccccccCCCCceeEEEecHHHH---HH
Q 047555 344 WLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA---N-----ISLPFITATADGPKHIETTLTRAKF---EE 412 (593)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---~-----i~i~~~~~~~~~~~~~~~~itr~~~---e~ 412 (593)
++..+... ... ..-...++.+|+.+...... . ...........-++...+.+..+.| |-
T Consensus 187 ~l~~~~~~---~~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~ 256 (371)
T cd00012 187 LLRERGYE---LNS-------SDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEI 256 (371)
T ss_pred HHHhcCCC---ccc-------hhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHh
Confidence 98765320 010 01134567777665432110 0 0000000001111223466666544 34
Q ss_pred HHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhCC----------CCCCCCCChhH
Q 047555 413 LCSDL-----LDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTGK----------DPNVTVNPDEV 475 (593)
Q Consensus 413 ~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g~----------~v~~~~~p~~a 475 (593)
+|+|. ...+.+.|.+.++.+..+ ..-.+.|+|+||+|++|++.++|++.+.. .+....+|..+
T Consensus 257 lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~ 336 (371)
T cd00012 257 LFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPPERKYS 336 (371)
T ss_pred cCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCCCcccc
Confidence 45542 347788888888876533 22357799999999999999999998852 12345789999
Q ss_pred HHhHHHHHhhh
Q 047555 476 VALGAAVQGGV 486 (593)
Q Consensus 476 VA~GAal~a~~ 486 (593)
++.||+++|..
T Consensus 337 aw~G~si~as~ 347 (371)
T cd00012 337 VWLGGSILASL 347 (371)
T ss_pred EEeCchhhcCc
Confidence 99999999875
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-18 Score=184.26 Aligned_cols=306 Identities=19% Similarity=0.204 Sum_probs=197.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC--------cEEecHHHHHhhhhCCCchhhhhhhhhC
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG--------DRLVGQIAKRQAVVNPENTFFSVKRFIG 184 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~--------~~~~G~~A~~~~~~~~~~~i~~~K~~lg 184 (593)
..|+||+||.++++++..++.|.++ +||+|+...++ ..++|++|.... +
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~---------------~ 58 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR---------------G 58 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC---------------C
Confidence 4689999999999999987778766 69998876543 235677663210 0
Q ss_pred CCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHH
Q 047555 185 RKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTAT 264 (593)
Q Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l 264 (593)
...+..|.....+...+.+..+|+++...... ....-..+++++|...+..+|+.+
T Consensus 59 -----------------------~~~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~ 114 (373)
T smart00268 59 -----------------------GLELKYPIEHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKI 114 (373)
T ss_pred -----------------------CceecCCCcCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHH
Confidence 00122222244456678888888888764221 111234689999999889999999
Q ss_pred HHHH-HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 265 KDAG-RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 265 ~~Aa-~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
.+.+ +..|++.+.++++|.+|+++++ ..+.+|||+|+++|+++.+..+. -+........+||.++|+.|.+
T Consensus 115 ~e~lfE~~~~~~v~~~~~~~~a~~~~g-----~~~~lVVDiG~~~t~v~pv~~G~---~~~~~~~~~~~GG~~l~~~l~~ 186 (373)
T smart00268 115 LEIMFETFNFPALYIAIQAVLSLYASG-----RTTGLVIDSGDGVTHVVPVVDGY---VLPHAIKRIDIAGRDLTDYLKE 186 (373)
T ss_pred HHHhhccCCCCeEEEeccHHHHHHhCC-----CCEEEEEecCCCcceEEEEECCE---EchhhheeccCcHHHHHHHHHH
Confidence 8885 6789999999999999999987 35679999999999999888442 1222233468999999999999
Q ss_pred HHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce---eeE----------EeccccccCCCCceeEEEecHHHH
Q 047555 344 WLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ---ANI----------SLPFITATADGPKHIETTLTRAKF 410 (593)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~i----------~i~~~~~~~~~~~~~~~~itr~~~ 410 (593)
++...-. .+ .. ..-.+.++.+|+.+..... ... ..+......+ ...+.+..+.|
T Consensus 187 ~l~~~~~-~~--~~-------~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd---g~~~~~~~er~ 253 (373)
T smart00268 187 LLSERGY-QF--NS-------SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPD---GNTIKVGNERF 253 (373)
T ss_pred HHHhcCC-CC--Cc-------HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCC---CCEEEEChHHe
Confidence 8876210 00 00 0113455666665532110 000 0000000011 12244444333
Q ss_pred ---HHHHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC------C--CCCCCCCC
Q 047555 411 ---EELCSDL-----LDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG------K--DPNVTVNP 472 (593)
Q Consensus 411 ---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g------~--~v~~~~~p 472 (593)
|.+|+|. ...+.+.|.+++.++..+ ..-.+.|+|+||+|++|++.++|++.+. . .+....++
T Consensus 254 ~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~ 333 (373)
T smart00268 254 RIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPER 333 (373)
T ss_pred eCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeEEecCCCC
Confidence 3344442 246778888888776533 1113569999999999999999998872 1 23334577
Q ss_pred hhHHHhHHHHHhhh
Q 047555 473 DEVVALGAAVQGGV 486 (593)
Q Consensus 473 ~~aVA~GAal~a~~ 486 (593)
..++..||+++|..
T Consensus 334 ~~~~W~G~silas~ 347 (373)
T smart00268 334 KYSVWLGGSILASL 347 (373)
T ss_pred ccceEeCcccccCc
Confidence 88999999988765
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.3e-17 Score=173.84 Aligned_cols=292 Identities=17% Similarity=0.159 Sum_probs=186.6
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC------------cEEecHHHHHhhhhCCCchhhhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG------------DRLVGQIAKRQAVVNPENTFFSV 179 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~------------~~~~G~~A~~~~~~~~~~~i~~~ 179 (593)
...|.||+|+.+++++++.+..|.++ +||+|+...++ ++++|++|...
T Consensus 4 ~~~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~------------ 63 (414)
T PTZ00280 4 LPVVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAA------------ 63 (414)
T ss_pred CCeEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhC------------
Confidence 34799999999999999987788766 68888765331 23455544221
Q ss_pred hhhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHH
Q 047555 180 KRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDS 259 (593)
Q Consensus 180 K~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~ 259 (593)
.+...+..|.....+...+.+..+|+++...... ....-..+++|.|..++..
T Consensus 64 --------------------------~~~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~ 116 (414)
T PTZ00280 64 --------------------------SKSYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPE 116 (414)
T ss_pred --------------------------cCCcEEecCccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHH
Confidence 0112233344445566778888888887643211 1122235899999999999
Q ss_pred HHHHHHHH-HHHcCCceEEEechhHHHHHHhccccC-----CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCcc
Q 047555 260 QRTATKDA-GRIAGLEVLRIINEPTAASLAYGFERK-----NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLG 333 (593)
Q Consensus 260 ~r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~-----~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lG 333 (593)
+|+.|.+. ++..+++.+.+..+|.++++++..... ...+-+|||+|.++|+++.+..+. . +........+|
T Consensus 117 ~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~G~--~-l~~~~~~~~~G 193 (414)
T PTZ00280 117 NREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVDGY--V-IGSSIKHIPLA 193 (414)
T ss_pred HHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEECCE--E-cccceEEecCc
Confidence 99999887 566699999999999999998733211 233569999999999998777432 1 11122336899
Q ss_pred HHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee-------------eEEeccccccCCCCce
Q 047555 334 GDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA-------------NISLPFITATADGPKH 400 (593)
Q Consensus 334 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-------------~i~i~~~~~~~~~~~~ 400 (593)
|.++|+.|.++|.++.. .+... ..++.++.+|+.++..... .....+...+..+...
T Consensus 194 G~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g~~ 263 (414)
T PTZ00280 194 GRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTKKP 263 (414)
T ss_pred HHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCCCc
Confidence 99999999999865421 11111 1134566677666532110 0000000011111122
Q ss_pred eEEEecHHHH---HHHHHHHH------HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC
Q 047555 401 IETTLTRAKF---EELCSDLL------DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG 463 (593)
Q Consensus 401 ~~~~itr~~~---e~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g 463 (593)
..+.|..+.| |-+|+|-+ ..+.++|.+.+.++... ..-.+.|+|+||+|.+|++.++|++.+.
T Consensus 264 ~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 264 YTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred cEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 4577777777 34666633 25678888888876543 1223679999999999999999998874
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.9e-17 Score=169.69 Aligned_cols=308 Identities=17% Similarity=0.152 Sum_probs=200.2
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKR 181 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~ 181 (593)
+...|.||+|+.+++++++.+..|.++ +||+|...++. +.++|++|...
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~-------------- 61 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSC--------FPAIVGRSKQNDGIFSTFNKEYYVGEEAQAK-------------- 61 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEE--------ecceeEEECCccccccccccceEEChhhhcc--------------
Confidence 445789999999999999988888876 68888765432 23345444210
Q ss_pred hhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHH
Q 047555 182 FIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQR 261 (593)
Q Consensus 182 ~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r 261 (593)
.+...+..|.....+...+.+..+|+++...... ....-..+++|-|..++..+|
T Consensus 62 ------------------------~~~~~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l~-v~p~~~pvlitE~~~~~~~~R 116 (375)
T PTZ00452 62 ------------------------RGVLAIKEPIQNGIINSWDDIEIIWHHAFYNELC-MSPEDQPVFMTDAPMNSKFNR 116 (375)
T ss_pred ------------------------ccCcEEcccCcCCEEcCHHHHHHHHHHHHHhhcC-CCcccCceeeecCCCCCHHHH
Confidence 1122233344455666788888888887643221 222234689999999999999
Q ss_pred HHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHH
Q 047555 262 TATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 340 (593)
Q Consensus 262 ~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~ 340 (593)
+.|.+. ++..+++.+.+.+.+.+++++++.. +-+|||+|.+.++++.+.-+- .+........+||.++++.
T Consensus 117 e~l~eilFE~~~vp~~~~~~~~~lslya~g~~-----tglVVDiG~~~t~v~PV~dG~---~l~~~~~r~~~gG~~lt~~ 188 (375)
T PTZ00452 117 ERMTQIMFETFNTPCLYISNEAVLSLYTSGKT-----IGLVVDSGEGVTHCVPVFEGH---QIPQAITKINLAGRLCTDY 188 (375)
T ss_pred HHHHHHHhhccCCceEEEechHHHHHHHCCCc-----eeeeecCCCCcceEEEEECCE---EeccceEEeeccchHHHHH
Confidence 999887 6778999999999999999987653 559999999999998777441 1222223367999999999
Q ss_pred HHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCcee---eE-------EeccccccCCCCceeEEEecHHHH
Q 047555 341 VVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQA---NI-------SLPFITATADGPKHIETTLTRAKF 410 (593)
Q Consensus 341 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---~i-------~i~~~~~~~~~~~~~~~~itr~~~ 410 (593)
|.++|..+ +..+..... ...++.+|+.++..... +. .....+.. ++...+.+..+.|
T Consensus 189 L~~lL~~~-----~~~~~~~~~-----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~L---PDg~~i~l~~er~ 255 (375)
T PTZ00452 189 LTQILQEL-----GYSLTEPHQ-----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKL---PDGNILTIKSQKF 255 (375)
T ss_pred HHHHHHhc-----CCCCCCHHH-----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEEC---CCCCEEEeehHHh
Confidence 99887543 111111111 22345555555422100 00 00000111 1223466777766
Q ss_pred ---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCC
Q 047555 411 ---EELCSDLL-----DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNP 472 (593)
Q Consensus 411 ---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p 472 (593)
|-+|+|.+ ..+.+++.+.+..+... ..-.+.|+|+||+|.+|++.++|++.+. .++....++
T Consensus 256 ~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r 335 (375)
T PTZ00452 256 RCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDR 335 (375)
T ss_pred cCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCc
Confidence 44556643 24677888888776533 2223689999999999999999998773 123334567
Q ss_pred hhHHHhHHHHHhhh
Q 047555 473 DEVVALGAAVQGGV 486 (593)
Q Consensus 473 ~~aVA~GAal~a~~ 486 (593)
..++..|++++|..
T Consensus 336 ~~~aW~GgSilasl 349 (375)
T PTZ00452 336 RFSAWIGGSIQCTL 349 (375)
T ss_pred ceeEEECchhhcCc
Confidence 78899999999864
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-16 Score=166.26 Aligned_cols=302 Identities=16% Similarity=0.174 Sum_probs=196.4
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKR 181 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~ 181 (593)
....|.||+|+.+++++++.++.|.++ +||+++...+. ..++|+++...
T Consensus 5 ~~~~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-------------- 62 (378)
T PTZ00004 5 ETNAAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-------------- 62 (378)
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhcc--------------
Confidence 445789999999999999988778766 68888765431 23455544211
Q ss_pred hhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHH
Q 047555 182 FIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQR 261 (593)
Q Consensus 182 ~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r 261 (593)
.+...+..|.....+...+.+..+|+++...-.. .......+++|.|..++..+|
T Consensus 63 ------------------------~~~~~l~~Pi~~G~i~d~d~~e~i~~~~~~~~l~-v~~~~~pvllte~~~~~~~~r 117 (378)
T PTZ00004 63 ------------------------RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANR 117 (378)
T ss_pred ------------------------cccceEcccCcCCEEcCHHHHHHHHHHHHHhhcc-cCCccCcceeecCCCCcHHHH
Confidence 0011122233344556677788888886532111 122234688999999999999
Q ss_pred HHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHH
Q 047555 262 TATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 340 (593)
Q Consensus 262 ~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~ 340 (593)
+.+.+. ++..+++.+.+..+|.+++++++. .+-+|||+|.+.|+++.+.-+- .+.......++||.++++.
T Consensus 118 ~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~pV~dG~---~l~~~~~~~~~GG~~lt~~ 189 (378)
T PTZ00004 118 EKMTQIMFETHNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEGY---SLPHAIHRLDVAGRDLTEY 189 (378)
T ss_pred HHHHHHHHhhcCCceEEeeccHHHHHHhcCC-----ceEEEEECCCCcEEEEEEECCE---EeecceeeecccHHHHHHH
Confidence 888776 677899999999999999998764 3559999999999998777441 2222334468999999999
Q ss_pred HHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc-----------------eeeEEeccccccCCCCceeEE
Q 047555 341 VVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT-----------------QANISLPFITATADGPKHIET 403 (593)
Q Consensus 341 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------------~~~i~i~~~~~~~~~~~~~~~ 403 (593)
|.++|..+. ..+... .-.+.+++.|+.++... .....+| | .-.+
T Consensus 190 L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lP------d---g~~i 250 (378)
T PTZ00004 190 MMKILHERG-----TTFTTT-----AEKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELP------D---GTII 250 (378)
T ss_pred HHHHHHhcC-----CCCCcH-----HHHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECC------C---CCEE
Confidence 999886531 111111 01234555665543211 0111111 1 2235
Q ss_pred EecHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------C
Q 047555 404 TLTRAKF---EELCSDL------LDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------K 464 (593)
Q Consensus 404 ~itr~~~---e~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~ 464 (593)
.+..+.| |-+|+|- ...+.++|.+++.++... ..-...|+|+||+|.+|++.++|++.+. .
T Consensus 251 ~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~~ 330 (378)
T PTZ00004 251 TVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKI 330 (378)
T ss_pred EEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCccE
Confidence 6666665 3566664 235667888888776533 1123679999999999999999998873 1
Q ss_pred CCCCCCCChhHHHhHHHHHhhh
Q 047555 465 DPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 465 ~v~~~~~p~~aVA~GAal~a~~ 486 (593)
++....++..++.+||+++|..
T Consensus 331 ~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 331 KVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred EEecCCCCceeEEECcccccCc
Confidence 2333457888999999998764
|
|
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-17 Score=169.53 Aligned_cols=306 Identities=16% Similarity=0.175 Sum_probs=197.1
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhhhh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKRFI 183 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~~l 183 (593)
..|.||+|+.+++++++.+..|..+ +||+|+..++. ..++|+++...
T Consensus 7 ~~vViD~Gs~~~k~G~age~~P~~i--------~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~---------------- 62 (376)
T PTZ00281 7 QALVIDNGSGMCKAGFAGDDAPRAV--------FPSIVGRPRHTGVMVGMGQKDSYVGDEAQSK---------------- 62 (376)
T ss_pred CeEEEECCCCeEEEeeCCCCCCCee--------ccccceeecCcccccCcccCCeEECchhhcc----------------
Confidence 4689999999999999988888766 68887764332 22344443210
Q ss_pred CCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 184 GRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 184 g~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
.+...+..|.....+...+.+..+|+++...... ....-..+++|-|..+...+|+.
T Consensus 63 ----------------------~~~~~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l~-v~p~~~pvllte~~~~~~~~re~ 119 (376)
T PTZ00281 63 ----------------------RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR-VAPEEHPVLLTEAPLNPKANREK 119 (376)
T ss_pred ----------------------ccCcEEeccCcCCEEcCHHHHHHHHHHHHHhhcc-CCCccCeEEEecCCCCcHHHHHH
Confidence 0111233333345566777888888887642111 12223468999999999999999
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
|.+. ++..+++.+.+..+|.+++++++. .+-+|||+|.+.+.++-+.-+-.. ........+||.++++.|.
T Consensus 120 l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-----~tglVVDiG~~~t~v~PV~dG~~~---~~~~~~~~~GG~~lt~~L~ 191 (376)
T PTZ00281 120 MTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVMDSGDGVSHTVPIYEGYAL---PHAILRLDLAGRDLTDYMM 191 (376)
T ss_pred HHHHHhcccCCceeEeeccHHHHHHhcCC-----ceEEEEECCCceEEEEEEEecccc---hhheeeccCcHHHHHHHHH
Confidence 9885 778899999999999999998765 356999999999999877655322 2223346899999999999
Q ss_pred HHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce-e--eE-------EeccccccCCCCceeEEEecHHHH--
Q 047555 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ-A--NI-------SLPFITATADGPKHIETTLTRAKF-- 410 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-~--~i-------~i~~~~~~~~~~~~~~~~itr~~~-- 410 (593)
+.|..+- ..+... .-.+.++.+|+.++.... . +. .........| ...+.+..+.|
T Consensus 192 ~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPd---g~~i~i~~er~~~ 258 (376)
T PTZ00281 192 KILTERG-----YSFTTT-----AEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPD---GQVITIGNERFRC 258 (376)
T ss_pred HHHHhcC-----CCCCcH-----HHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCC---CCEEEeeHHHeeC
Confidence 8876531 111110 012346666666542110 0 00 0000001111 23466666655
Q ss_pred -HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChh
Q 047555 411 -EELCSDLL-----DRLKKPVETALRDAKLSF--NDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDE 474 (593)
Q Consensus 411 -e~~~~~~~-----~~i~~~i~~~l~~~~~~~--~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~ 474 (593)
|-+|+|.+ ..+.++|.+.+.++.... .-.+.|+|+||+|.+|++.++|++.+. .++....++..
T Consensus 259 ~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~ 338 (376)
T PTZ00281 259 PEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKY 338 (376)
T ss_pred cccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEecCCCCce
Confidence 45666533 246677777777764331 113679999999999999999988773 12333457788
Q ss_pred HHHhHHHHHhhh
Q 047555 475 VVALGAAVQGGV 486 (593)
Q Consensus 475 aVA~GAal~a~~ 486 (593)
++.+|++++|..
T Consensus 339 ~aW~Ggsilasl 350 (376)
T PTZ00281 339 SVWIGGSILASL 350 (376)
T ss_pred eEEECcccccCc
Confidence 999999999874
|
|
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-17 Score=149.93 Aligned_cols=196 Identities=26% Similarity=0.387 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCc
Q 047555 228 QVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGG 307 (593)
Q Consensus 228 ~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~Ggg 307 (593)
.+.+++++.+++.++.++++..-++|..-.....+...+..+.||++++.+++||+|||.-..++.. .|+|+|||
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-----~VVDiGGG 150 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-----GVVDIGGG 150 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-----cEEEeCCC
Confidence 4568889999999999999999999998877777888888999999999999999999987766544 89999999
Q ss_pred eEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEE
Q 047555 308 TFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANIS 387 (593)
Q Consensus 308 T~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~ 387 (593)
||-+++++-++..| ..+...||.+++.-|+-+ ++++ .+++|+.|+.-...
T Consensus 151 TTGIsi~kkGkViy-----~ADEpTGGtHmtLvlAG~--------ygi~-----------~EeAE~~Kr~~k~~------ 200 (277)
T COG4820 151 TTGISIVKKGKVIY-----SADEPTGGTHMTLVLAGN--------YGIS-----------LEEAEQYKRGHKKG------ 200 (277)
T ss_pred cceeEEEEcCcEEE-----eccCCCCceeEEEEEecc--------cCcC-----------HhHHHHhhhccccc------
Confidence 99999999887665 566778888776544322 2332 56777777652111
Q ss_pred eccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCC
Q 047555 388 LPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN 467 (593)
Q Consensus 388 i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~ 467 (593)
+|+-..++|+++++.+.+.+.++..+ +..++|+||+|.-|.+.+.++++|+.++.
T Consensus 201 --------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v~ 255 (277)
T COG4820 201 --------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQVH 255 (277)
T ss_pred --------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhccccc
Confidence 12234578999999999999998765 55699999999999999999999999999
Q ss_pred CCCCChhHHHhHHHHH
Q 047555 468 VTVNPDEVVALGAAVQ 483 (593)
Q Consensus 468 ~~~~p~~aVA~GAal~ 483 (593)
.+..|....-+|.|+-
T Consensus 256 ~P~~p~y~TPLgIA~s 271 (277)
T COG4820 256 LPQHPLYMTPLGIASS 271 (277)
T ss_pred cCCCcceechhhhhhc
Confidence 9999998888877754
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=4e-16 Score=164.54 Aligned_cols=308 Identities=16% Similarity=0.158 Sum_probs=197.1
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhhhh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKRFI 183 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~~l 183 (593)
..|.||+|+.+++++++.+..|.++ +||+|+..+.. ..++|+++...
T Consensus 13 ~~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~---------------- 68 (380)
T PTZ00466 13 QPIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEY---------------- 68 (380)
T ss_pred CeEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhh----------------
Confidence 4688999999999999988888766 68888765331 23445544211
Q ss_pred CCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 184 GRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 184 g~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
.+...+..|.....+...+.+..+++++.+... ....-..+++|-|..++..+|+.
T Consensus 69 ----------------------~~~~~l~~Pi~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~ 124 (380)
T PTZ00466 69 ----------------------RGLLKVTYPINHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEK 124 (380)
T ss_pred ----------------------CcCceeCccccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHH
Confidence 011112223334456778888888888864321 12223468999999999999999
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
|.+. ++..+++.+.+.++|.+++++++. .+-+|||+|.+.|.++-+..+ . .+.......++||.++++.|.
T Consensus 125 ~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-----~tglVVD~G~~~t~v~PV~~G--~-~~~~~~~~~~~GG~~lt~~L~ 196 (380)
T PTZ00466 125 IAEVFFETFNVPALFISIQAILSLYSCGK-----TNGTVLDCGDGVCHCVSIYEG--Y-SITNTITRTDVAGRDITTYLG 196 (380)
T ss_pred HHHHHhccCCCCeEEEecchHHHHHhcCC-----ceEEEEeCCCCceEEEEEECC--E-EeecceeEecCchhHHHHHHH
Confidence 8776 677899999999999999998865 356999999999999877633 1 122223346899999999999
Q ss_pred HHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce---eeE---EeccccccCCCCceeEEEecHHHH---HHH
Q 047555 343 DWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ---ANI---SLPFITATADGPKHIETTLTRAKF---EEL 413 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~i---~i~~~~~~~~~~~~~~~~itr~~~---e~~ 413 (593)
+.|.+. +..... . .-++.++.+|+.++.... .+. .-+.......-++...+.+..+.| |-+
T Consensus 197 ~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~L 266 (380)
T PTZ00466 197 YLLRKN-----GHLFNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVL 266 (380)
T ss_pred HHHHhc-----CCCCCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccc
Confidence 887642 111100 0 113345566665542110 000 000000000011223466777666 455
Q ss_pred HHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhCC--------CCCCCCCChhHHHh
Q 047555 414 CSDLL-----DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTGK--------DPNVTVNPDEVVAL 478 (593)
Q Consensus 414 ~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g~--------~v~~~~~p~~aVA~ 478 (593)
|+|-+ ..+.++|.+.+.++..+ ..-...|+|+||+|.+|++.++|++.+.. ++....++..++.+
T Consensus 267 F~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~ 346 (380)
T PTZ00466 267 FNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFI 346 (380)
T ss_pred cCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEecCCCCceeEEE
Confidence 65532 24667777777776543 12236799999999999999999988731 23334577788999
Q ss_pred HHHHHhhh
Q 047555 479 GAAVQGGV 486 (593)
Q Consensus 479 GAal~a~~ 486 (593)
|++++|..
T Consensus 347 GgSilasl 354 (380)
T PTZ00466 347 GGSILASL 354 (380)
T ss_pred CchhhcCc
Confidence 99999864
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-16 Score=165.36 Aligned_cols=312 Identities=21% Similarity=0.265 Sum_probs=191.6
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC----cEEecHHHHHhhhhCCCchhhhhhhhhCCCC
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG----DRLVGQIAKRQAVVNPENTFFSVKRFIGRKM 187 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~----~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~ 187 (593)
..+|-||+|+.+++++++.+..|..+ +||+++...+. ...+|.++...
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~-------------------- 55 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP-------------------- 55 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT--------------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc--------------------
Confidence 46789999999999999877777765 58888876543 35688774221
Q ss_pred chhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 047555 188 SEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDA 267 (593)
Q Consensus 188 ~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~A 267 (593)
.....+..+.....+...+.+..+|+++...... ....-..++++.|..++...|+.+.+.
T Consensus 56 ------------------~~~~~~~~p~~~g~i~~~~~~e~i~~~~~~~~l~-~~~~~~~vll~~~~~~~~~~r~~l~e~ 116 (393)
T PF00022_consen 56 ------------------RSNLELRSPIENGVIVDWDALEEIWDYIFSNLLK-VDPSDHPVLLTEPPFNPRSQREKLAEI 116 (393)
T ss_dssp ------------------GTGEEEEESEETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHH
T ss_pred ------------------hhheeeeeeccccccccccccccccccccccccc-cccccceeeeeccccCCchhhhhhhhh
Confidence 0011122222234455667778888887764311 222334699999999999999988777
Q ss_pred -HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHH
Q 047555 268 -GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLA 346 (593)
Q Consensus 268 -a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~ 346 (593)
++..+++.+.+++++.+|+++++.. +-+|||+|.+.|.++.+..+ .. +........+||.++++.|.++|.
T Consensus 117 lfE~~~~~~v~~~~~~~~a~~~~g~~-----tglVVD~G~~~t~v~pV~dG--~~-~~~~~~~~~~GG~~lt~~l~~lL~ 188 (393)
T PF00022_consen 117 LFEKFGVPSVYFIPSPLLALYASGRT-----TGLVVDIGYSSTSVVPVVDG--YV-LPHSIKRSPIGGDDLTEYLKELLK 188 (393)
T ss_dssp HHHTS--SEEEEEEHHHHHHHHTTBS-----SEEEEEESSS-EEEEEEETT--EE--GGGBEEES-SHHHHHHHHHHHHH
T ss_pred hhcccccceeeeeecccccccccccc-----cccccccceeeeeeeeeeec--cc-cccccccccccHHHHHHHHHHHHH
Confidence 6678999999999999999999776 44999999999999887633 21 111223368999999999999988
Q ss_pred HH-hhhhhCCCCc------CCHHHHHHHHHHHHHHhhhcCC---------------CceeeEEeccccccCCCCceeEEE
Q 047555 347 EN-FKRDEGVVLL------NDKQALQRLTEAAEKAKMELSS---------------LTQANISLPFITATADGPKHIETT 404 (593)
Q Consensus 347 ~~-~~~~~~~~~~------~~~~~~~~L~~~~e~~K~~Ls~---------------~~~~~i~i~~~~~~~~~~~~~~~~ 404 (593)
.+ +......... ........-....+.+|+.+.. .....+.+| ++ ..+.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP------dg---~~i~ 259 (393)
T PF00022_consen 189 ERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP------DG---QTII 259 (393)
T ss_dssp HT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T------TS---SEEE
T ss_pred hhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc------cc---cccc
Confidence 84 1111000000 0000011112333344433321 111222222 11 2456
Q ss_pred ecHHHH---HHHHHHHH------------HHHHHHHHHHHHHcCCCCC--CCCeEEEEeCCCChHhHHHHHHhHhC----
Q 047555 405 LTRAKF---EELCSDLL------------DRLKKPVETALRDAKLSFN--DLDEVILVGGSTRIPAVQELVKKMTG---- 463 (593)
Q Consensus 405 itr~~~---e~~~~~~~------------~~i~~~i~~~l~~~~~~~~--~i~~VvLvGG~s~~p~l~~~l~~~~g---- 463 (593)
+..+.| |-+|.|.. ..+.++|.+.+.++..... -.+.|+|+||+|++|++.++|.+.+.
T Consensus 260 ~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~ 339 (393)
T PF00022_consen 260 LGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLP 339 (393)
T ss_dssp ESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSG
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhhhh
Confidence 665555 23334322 1577888888887653311 13679999999999999999988773
Q ss_pred ----CCCCCCC-CChhHHHhHHHHHhhhh
Q 047555 464 ----KDPNVTV-NPDEVVALGAAVQGGVL 487 (593)
Q Consensus 464 ----~~v~~~~-~p~~aVA~GAal~a~~l 487 (593)
.++.... +|..++..||+++|..-
T Consensus 340 ~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 340 SSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp TTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred ccccceeccCchhhhhcccccceeeeccc
Confidence 1233344 89999999999998764
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-14 Score=146.88 Aligned_cols=205 Identities=16% Similarity=0.180 Sum_probs=137.7
Q ss_pred EEEEeCCCCCHHH-HHHHHHHHHHc------------CCceEEEechhHHHHHHhcccc--------CCCceEEEEeeCC
Q 047555 248 AVVTVPAYFNDSQ-RTATKDAGRIA------------GLEVLRIINEPTAASLAYGFER--------KNNETILVFDLGG 306 (593)
Q Consensus 248 ~viTVPa~~~~~~-r~~l~~Aa~~A------------Gl~~v~li~Ep~AAal~~~~~~--------~~~~~vlVvD~Gg 306 (593)
++...|..+-..+ ++.+++..... .+..+.+++||.+|.+.+..+. .....++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 4469998875444 36677665321 1245789999999988776542 1345789999999
Q ss_pred ceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeE
Q 047555 307 GTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANI 386 (593)
Q Consensus 307 gT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 386 (593)
||||++++. +..+. ...++....|..++.+.+.+.+..+.. +..+ +.. .++++-+. . .+
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~--~~~-------~ie~~l~~---g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKEE---GASI--TPY-------MLEKGLEY---G---AC 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhCC---CCCC--CHH-------HHHHHHHc---C---cE
Confidence 999999987 33322 233455788999999999888864422 1111 111 22222111 0 01
Q ss_pred EeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCC
Q 047555 387 SLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDP 466 (593)
Q Consensus 387 ~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v 466 (593)
.+. +.+. +.+ ++++.++++++++++.+.++..+.+ ..+++.|+|+||++.+ +++.|++.|+. +
T Consensus 254 ~~~-------~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~ 316 (344)
T PRK13917 254 KLN-------QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-V 316 (344)
T ss_pred EeC-------CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-e
Confidence 110 0011 222 3567778889999988888887754 2478999999999976 89999999974 4
Q ss_pred CCCCCChhHHHhHHHHHhhhhcCC
Q 047555 467 NVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 467 ~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
....||..|.|+|...+|..+.+.
T Consensus 317 ~~~~~p~~ANa~G~~~~g~~~~~~ 340 (344)
T PRK13917 317 EKADESQFANVRGYYKYGELLKNK 340 (344)
T ss_pred EEcCChHHHHHHHHHHHHHHHhcc
Confidence 678999999999999999877654
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-12 Score=137.02 Aligned_cols=179 Identities=20% Similarity=0.240 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHHcCCceEEEechhHHHHHHhc------cccCCCc-eEEEEeeCCceEEEEEEEEcCCEEEEEEecCC
Q 047555 257 NDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG------FERKNNE-TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 329 (593)
Q Consensus 257 ~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~------~~~~~~~-~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~ 329 (593)
.....+.+.++++.||++...+..+|.|.+-.+. ....... .++++|+|+++|++++++-+...+ ...
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~~-----~r~ 215 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRMLF-----TRE 215 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEEE-----EEE
Confidence 4567888999999999999999999999876662 1122233 499999999999999998665443 555
Q ss_pred CCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHH
Q 047555 330 THLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAK 409 (593)
Q Consensus 330 ~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~ 409 (593)
..+||.+|++.+.+.+. .+ .+.||+.|........ .
T Consensus 216 i~~G~~~i~~~i~~~~~--------~~-----------~~~Ae~~k~~~~~~~~-------------------------~ 251 (348)
T TIGR01175 216 VPFGTRQLTSELSRAYG--------LN-----------PEEAGEAKQQGGLPLL-------------------------Y 251 (348)
T ss_pred eechHHHHHHHHHHHcC--------CC-----------HHHHHHHHhcCCCCCc-------------------------h
Confidence 78999999998865332 11 4678888875321110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC-------------------
Q 047555 410 FEELCSDLLDRLKKPVETALRDA--KLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV------------------- 468 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~------------------- 468 (593)
-.+++++.++++...|++.++-. ......++.|+|+||++++++|.+.+++.++.++..
T Consensus 252 ~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~~~~~~ 331 (348)
T TIGR01175 252 DPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVDAGRLA 331 (348)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCCHHHHH
Confidence 12345666666666666666532 122345899999999999999999999999854321
Q ss_pred CCCChhHHHhHHHHHh
Q 047555 469 TVNPDEVVALGAAVQG 484 (593)
Q Consensus 469 ~~~p~~aVA~GAal~a 484 (593)
...|..++|.|+|+++
T Consensus 332 ~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 332 VDAPALMTALGLALRG 347 (348)
T ss_pred hhhHHHHHHhhHhhcC
Confidence 1356778888888874
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.46 E-value=4e-12 Score=131.44 Aligned_cols=204 Identities=19% Similarity=0.187 Sum_probs=130.0
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCceEEEechhHHHHHHhcccc----CCCceEEEEeeCCceEE
Q 047555 244 KITKAVVTVPAYFNDSQRTATKDAGRIA---------GLEVLRIINEPTAASLAYGFER----KNNETILVFDLGGGTFD 310 (593)
Q Consensus 244 ~~~~~viTVPa~~~~~~r~~l~~Aa~~A---------Gl~~v~li~Ep~AAal~~~~~~----~~~~~vlVvD~GggT~D 310 (593)
.+..+|+..|..+...+++.+++.+... -++.+.+++||.+|.+.+..+. .....++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999999888999998886542 3466889999999988776532 24667899999999999
Q ss_pred EEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEecc
Q 047555 311 VSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPF 390 (593)
Q Consensus 311 vsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~ 390 (593)
+.++. +..+ +...++....|-.++-+.+.+.+.++++.. ...+...+ ....+.-|.....
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~----~~~~~~~i---~~~l~~g~~~~~~---------- 240 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIGTP----AYRDIDRI---DLALRTGKQPRIY---------- 240 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcCCC----CccCHHHH---HHHHHhCCceeec----------
Confidence 98774 3333 334455577898888888888887765432 00111111 1111111100000
Q ss_pred ccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-CCCCC
Q 047555 391 ITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-DPNVT 469 (593)
Q Consensus 391 ~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~v~~~ 469 (593)
.+. +.|+ +..+..+..++++...+...+. ...+++.|+|+||++. .+++.|++.|+. .+...
T Consensus 241 -------gk~--~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~ 303 (320)
T TIGR03739 241 -------QKP--VDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEV 303 (320)
T ss_pred -------cee--cCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEec
Confidence 001 1121 2222333333444433333332 1245889999999986 778999999975 34567
Q ss_pred CCChhHHHhHHHHHh
Q 047555 470 VNPDEVVALGAAVQG 484 (593)
Q Consensus 470 ~~p~~aVA~GAal~a 484 (593)
.||..|.|+|-..+|
T Consensus 304 ~dp~~ANarG~~~~g 318 (320)
T TIGR03739 304 DEPMFANVRGFQIAG 318 (320)
T ss_pred CCcHHHHHHHHHHhh
Confidence 899999999988765
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.4e-12 Score=125.42 Aligned_cols=183 Identities=16% Similarity=0.195 Sum_probs=129.5
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEe----C----CcEEecHHHHHhhhhCCCchhhhhhhhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK----I----GDRLVGQIAKRQAVVNPENTFFSVKRFI 183 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~----~----~~~~~G~~A~~~~~~~~~~~i~~~K~~l 183 (593)
-..|.||.|+..++++|+..+-|..+ +||++.... + +..+++..|...
T Consensus 11 v~alViDpGS~~traGyaged~Pk~i--------lPS~~G~~tk~~~d~~~~~~~y~~~~ai~~---------------- 66 (426)
T KOG0679|consen 11 VSALVIDPGSHTTRAGYAGEDSPKAI--------LPSVYGKVTKTDGDAEDKKGYYVDENAIHV---------------- 66 (426)
T ss_pred cceEEEeCCCceEeccccCCCCcccc--------ccceeeeeecccCccccccceEeechhccC----------------
Confidence 35788999999999999988888776 688887421 1 112444443211
Q ss_pred CCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 184 GRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 184 g~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
+ +....+..+.....+...|++.+.+++.++...+ .+.....++||-|++-+.+.|+.
T Consensus 67 --p-------------------r~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek 124 (426)
T KOG0679|consen 67 --P-------------------RPGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREK 124 (426)
T ss_pred --C-------------------CCCCeeccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHH
Confidence 0 1111122222244557889999999998864332 22233468999998888888998
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+.++ ++...++..+++.+|+++|++.+.. +-||||+|++++.++-+..+ +.+....-...+||+.|+..+.
T Consensus 125 ~~ElmFE~~nvPAf~L~k~~v~~AFA~Grs-----talVvDiGa~~~svsPV~DG---~Vlqk~vvks~laGdFl~~~~~ 196 (426)
T KOG0679|consen 125 LTELMFEKLNVPAFYLAKTAVCTAFANGRS-----TALVVDIGATHTSVSPVHDG---YVLQKGVVKSPLAGDFLNDQCR 196 (426)
T ss_pred HHHHHHhhcCCceEEEechHHHHHHhcCCC-----ceEEEEecCCCceeeeeecc---eEeeeeeEecccchHHHHHHHH
Confidence 8776 7788999999999999999998764 56999999999999977644 2222222336899999999999
Q ss_pred HHHHHH
Q 047555 343 DWLAEN 348 (593)
Q Consensus 343 ~~l~~~ 348 (593)
+.|..+
T Consensus 197 q~l~~~ 202 (426)
T KOG0679|consen 197 QLLEPK 202 (426)
T ss_pred HHHhhc
Confidence 998765
|
|
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-12 Score=134.30 Aligned_cols=317 Identities=19% Similarity=0.213 Sum_probs=192.6
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEe----------CCcEEecHHHHHhhhhCCCchhhhhhhhhC
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK----------IGDRLVGQIAKRQAVVNPENTFFSVKRFIG 184 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~----------~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg 184 (593)
|.||.||..++++++.+..|..+ +|+++.-.. .+...+|+++....
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V--------~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~---------------- 64 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTV--------FPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDR---------------- 64 (444)
T ss_pred EEEeCCCceEEeeecCCCCceee--------cccccccccccccccccccccccccCchhhhcc----------------
Confidence 89999999999999998888766 455554331 23344555542210
Q ss_pred CCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHH-HHHhCCCcCcEEEEeCCCCCHHHHHH
Q 047555 185 RKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDA-SKFLNDKITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 185 ~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a-~~~l~~~~~~~viTVPa~~~~~~r~~ 263 (593)
......+..+.....+...+.+..++++++..- .......-..+++|-|..+....|+.
T Consensus 65 --------------------~~~~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~ 124 (444)
T COG5277 65 --------------------DNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREK 124 (444)
T ss_pred --------------------CCccceeecccccCccCCcHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHH
Confidence 001222333444555677888889999887753 11111222369999999999999999
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+.+. ++...+..+.+..++.+++++.+... .+.+|+|+|.+.++++-+-.+-. +........+||.+++..|.
T Consensus 125 ~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~---~~g~ViD~G~~~t~v~PV~DG~~---l~~a~~ri~~gG~~it~~l~ 198 (444)
T COG5277 125 ITELLFETLNVPALYLAIQAVLSLYASGSSD---ETGLVIDSGDSVTHVIPVVDGIV---LPKAVKRIDIGGRDITDYLK 198 (444)
T ss_pred HHHHHHHhcCCcceEeeHHHHHHHHhcCCCC---CceEEEEcCCCceeeEeeecccc---ccccceeeecCcHHHHHHHH
Confidence 8776 78889999999999999999887653 46799999999999997775522 22233446899999999999
Q ss_pred HHHHHHhhhhhCCCCc-----CCHHHHHHHHHHHH------------------HHhhhcCCC---------ceeeEEecc
Q 047555 343 DWLAENFKRDEGVVLL-----NDKQALQRLTEAAE------------------KAKMELSSL---------TQANISLPF 390 (593)
Q Consensus 343 ~~l~~~~~~~~~~~~~-----~~~~~~~~L~~~~e------------------~~K~~Ls~~---------~~~~i~i~~ 390 (593)
+.|........+..+. .+.+....+..++. +.++..... ........
T Consensus 199 ~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~- 277 (444)
T COG5277 199 KLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKE- 277 (444)
T ss_pred HHHhhcccccCCcccccccccccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccc-
Confidence 9998854211111111 11222222222222 222111000 00000000
Q ss_pred ccccCCCCceeEEEecHH-HH---HHHHHHH--H-----HH---------------------------HHHHHHHHHHHc
Q 047555 391 ITATADGPKHIETTLTRA-KF---EELCSDL--L-----DR---------------------------LKKPVETALRDA 432 (593)
Q Consensus 391 ~~~~~~~~~~~~~~itr~-~~---e~~~~~~--~-----~~---------------------------i~~~i~~~l~~~ 432 (593)
....++...+.+-.+ .| |.+|.|- + +. +.+++.+.+..+
T Consensus 278 ---~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~ 354 (444)
T COG5277 278 ---SKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQIC 354 (444)
T ss_pred ---cccCCCCceEeechhhhhhcchhhcCCccccccccccccchhhhhhhhhhccccccccccccccchHHHHHHHHHhc
Confidence 000111122333222 22 2233332 1 11 455555555544
Q ss_pred CCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChhHHHhHHHHHhh
Q 047555 433 KLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 433 ~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~aVA~GAal~a~ 485 (593)
... ..-+..|+|+||++.+|++.++|.+.+. ..+..+.+|...+.+||+++|.
T Consensus 355 ~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v~v~~~~~~~~~~W~GaSila~ 417 (444)
T COG5277 355 DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASILAS 417 (444)
T ss_pred cHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCceeeecCCchhhccccchhhhcc
Confidence 322 1224679999999999999999999873 2355667999999999999987
|
|
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=136.85 Aligned_cols=178 Identities=22% Similarity=0.336 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhccc------cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCC
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE------RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH 331 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~------~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~ 331 (593)
....+.+.++++.||++...+--++.|.+-.+... ......++++|+|+..+.++++.-+...+ .+...
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~~f-----~R~i~ 209 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKPIF-----SRSIP 209 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEEEE-----EEEES
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEEEE-----EEEEe
Confidence 56778889999999999988888888865544331 12356799999999999999998554333 44578
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHH
Q 047555 332 LGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411 (593)
Q Consensus 332 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e 411 (593)
+||.++++.+.+.+.-. .+++|+.|..-+... +...
T Consensus 210 ~G~~~l~~~i~~~~~i~-------------------~~~Ae~~k~~~~l~~-------------------------~~~~ 245 (340)
T PF11104_consen 210 IGGNDLTEAIARELGID-------------------FEEAEELKRSGGLPE-------------------------EYDQ 245 (340)
T ss_dssp -SHHHHHHHHHHHTT---------------------HHHHHHHHHHT-------------------------------HH
T ss_pred eCHHHHHHHHHHhcCCC-------------------HHHHHHHHhcCCCCc-------------------------chHH
Confidence 99999999998764432 456677666521100 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHH--cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCC---------CC----------
Q 047555 412 ELCSDLLDRLKKPVETALRD--AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNV---------TV---------- 470 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~---------~~---------- 470 (593)
+.+++.++++...|++.++- .......|+.|+|+||++++++|.+.|++.++.++.. ..
T Consensus 246 ~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~ 325 (340)
T PF11104_consen 246 DALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQED 325 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhh
Confidence 56667777777777777663 2233457999999999999999999999999854321 11
Q ss_pred CChhHHHhHHHHHh
Q 047555 471 NPDEVVALGAAVQG 484 (593)
Q Consensus 471 ~p~~aVA~GAal~a 484 (593)
.|..++|.|.|+++
T Consensus 326 ~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 326 APQFAVALGLALRG 339 (340)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhcC
Confidence 36779999999874
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.6e-12 Score=128.66 Aligned_cols=173 Identities=18% Similarity=0.295 Sum_probs=99.8
Q ss_pred ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhh
Q 047555 274 EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDE 353 (593)
Q Consensus 274 ~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~ 353 (593)
..+.+++|+.||.+.+..+..+...++|+|+||+|+|++++.-. .-.+....+...+|-..+.+.+.+.|... ....
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~~~~~lVVDIGG~T~Dv~~v~~~--~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~-~~~~ 217 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDEDESVLVVDIGGRTTDVAVVRGG--LPDISKCSGTPEIGVSDLYDAIAQALRSA-GIDT 217 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-TTSEEEEEEE-SS-EEEEEEEGG--G--EEEEEEETTSSTHHHHHHHHHHTT---SBHH
T ss_pred eeEEEEcccHHHHHHHHHhhcccCcEEEEEcCCCeEEeeeecCC--ccccchhccCCchhHHHHHHHHHHHHHHh-cCCC
Confidence 57889999999999988776666789999999999999988632 11122234446788888888887776652 1100
Q ss_pred CCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 047555 354 GVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAK 433 (593)
Q Consensus 354 ~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~ 433 (593)
+ ...++++-....... ++..... ..-..+++.++++..++++.+.|.+.+.+
T Consensus 218 ------s-------~~~~~~ii~~~~~~~-------~~~~~i~------~~~~~~~v~~~i~~~~~~l~~~i~~~~~~-- 269 (318)
T PF06406_consen 218 ------S-------ELQIDDIIRNRKDKG-------YLRQVIN------DEDVIDDVSEVIEEAVEELINRILRELGD-- 269 (318)
T ss_dssp ------H-------HHHHHHHHHTTT-HH-------HHHHHSS------SHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ------c-------HHHHHHHHHhhhccc-------eeccccc------chhhHHHHHHHHHHHHHHHHHHHHHHHhh--
Confidence 0 001111100000000 0000000 00012344445555555555555544432
Q ss_pred CCCCCCCeEEEEeCCCChHhHHHHHHhHhC---CCCCCCCCChhHHHhHHH
Q 047555 434 LSFNDLDEVILVGGSTRIPAVQELVKKMTG---KDPNVTVNPDEVVALGAA 481 (593)
Q Consensus 434 ~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g---~~v~~~~~p~~aVA~GAa 481 (593)
..+++.|+|+||++ ..+.+.|++.++ ..+....||+.|.|+|-+
T Consensus 270 --~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 --FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp --S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred --hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 34678999999998 489999999987 357788999999999975
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >KOG0676 consensus Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=119.58 Aligned_cols=303 Identities=19% Similarity=0.217 Sum_probs=175.8
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEe---------CCcEEecHHHHHhhhhCCCchhhhhhh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK---------IGDRLVGQIAKRQAVVNPENTFFSVKR 181 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~---------~~~~~~G~~A~~~~~~~~~~~i~~~K~ 181 (593)
+...|-||.|+.+++++++.+..|..+ +||+|.... .++..+|++|....
T Consensus 6 ~~~~vViDnGsg~~KaGfag~~~P~~v--------~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~------------- 64 (372)
T KOG0676|consen 6 DIQAVVIDNGSGFVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR------------- 64 (372)
T ss_pred CcceEEEECCCceeecccCCCCCCcee--------cceeccccccccccccccccccccchhhhccc-------------
Confidence 447889999999999999866666544 577774311 12344566553221
Q ss_pred hhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHH
Q 047555 182 FIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQR 261 (593)
Q Consensus 182 ~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r 261 (593)
.+..|.....++.++-+..+++++...-.....+. ..+++|-|..|....|
T Consensus 65 ----------------------------~l~~Pie~Giv~~wd~me~iw~~if~~~L~~~Pee-~pvllte~pl~p~~nR 115 (372)
T KOG0676|consen 65 ----------------------------TLKYPIERGIVTDWDDMEKIWHHLFYSELLVAPEE-HPVLLTEPPLNPKANR 115 (372)
T ss_pred ----------------------------cccCccccccccchHHHHHHHHHHHHHhhccCccc-CceEeecCCCCchHhH
Confidence 11222223445666777889988884333222222 5799999999999999
Q ss_pred HHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHH
Q 047555 262 TATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 340 (593)
Q Consensus 262 ~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~ 340 (593)
+.|.+. ++..+.+.+.+.. .|..++++.. +=+|+|+|.|-+++.-+--+ +.+...-....+||.++++.
T Consensus 116 Ek~tqi~FE~fnvpa~yva~--qavlya~g~t-----tG~VvD~G~gvt~~vPI~eG---~~lp~ai~~ldl~G~dlt~~ 185 (372)
T KOG0676|consen 116 EKLTQIMFETFNVPALYVAI--QAVLYASGRT-----TGLVVDSGDGVTHVVPIYEG---YALPHAILRLDLAGRDLTDY 185 (372)
T ss_pred HHHHHHhhhhcCccHhHHHH--HHHHHHcCCe-----eEEEEEcCCCceeeeecccc---cccchhhheecccchhhHHH
Confidence 999887 6666777766522 3333444443 34999999998877655433 22223344578999999998
Q ss_pred HHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce---e-------eEEeccccccCCCCceeEEEecHHHH
Q 047555 341 VVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ---A-------NISLPFITATADGPKHIETTLTRAKF 410 (593)
Q Consensus 341 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~-------~i~i~~~~~~~~~~~~~~~~itr~~~ 410 (593)
+...|.+. +.......+ ++.++.+|+.++.... . .-.+...+...|+.. +.+.-+.|
T Consensus 186 l~~~L~~~-----g~s~~~~~~-----~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~---i~i~~erf 252 (372)
T KOG0676|consen 186 LLKQLRKR-----GYSFTTSAE-----FEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQK---ITIGNERF 252 (372)
T ss_pred HHHHHHhc-----ccccccccH-----HHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCE---EecCCccc
Confidence 77777761 111111111 2334555555542210 0 000111111222221 44444443
Q ss_pred ---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCC
Q 047555 411 ---EELCSDLL-----DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNP 472 (593)
Q Consensus 411 ---e~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p 472 (593)
|-+|+|-+ ..+.+.+-+.+.++..+ ..-...|+|+||++.+|++.+++.+.+. .++..+.+.
T Consensus 253 ~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~~ikv~~pp~r 332 (372)
T KOG0676|consen 253 RCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTIKIKVIAPPER 332 (372)
T ss_pred ccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCcceEEecCccc
Confidence 33444432 33444555544444332 2223679999999999999999988763 123334444
Q ss_pred hhHHHhHHHHHhhh
Q 047555 473 DEVVALGAAVQGGV 486 (593)
Q Consensus 473 ~~aVA~GAal~a~~ 486 (593)
..++..|+.+.|..
T Consensus 333 ~~s~WlGgSIlasl 346 (372)
T KOG0676|consen 333 KYSAWLGGSILASL 346 (372)
T ss_pred ccceecCceeEeec
Confidence 56788888887764
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.1e-09 Score=106.30 Aligned_cols=160 Identities=20% Similarity=0.266 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhcccc------CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCC
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFER------KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH 331 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~------~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~ 331 (593)
.+..+...+|++.||++...+--|..|.--+|.... ...-.++|+|+|+..+.+.++.-+...| .....
T Consensus 148 kE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~ly-----~r~~~ 222 (354)
T COG4972 148 KEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKILY-----TREVP 222 (354)
T ss_pred hhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCeeee-----Eeecc
Confidence 345666788999999999888888888866665221 1123478999999999999999776665 66688
Q ss_pred ccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHH
Q 047555 332 LGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411 (593)
Q Consensus 332 lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e 411 (593)
+||+.+++.+.+.+.- + ...++.+|....... +.-.
T Consensus 223 ~g~~Qlt~~i~r~~~L--------~-----------~~~a~~~k~~~~~P~-------------------------~y~~ 258 (354)
T COG4972 223 VGTDQLTQEIQRAYSL--------T-----------EEKAEEIKRGGTLPT-------------------------DYGS 258 (354)
T ss_pred CcHHHHHHHHHHHhCC--------C-----------hhHhHHHHhCCCCCC-------------------------chhH
Confidence 9999999887654321 1 345666666643222 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHHc--CCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCC
Q 047555 412 ELCSDLLDRLKKPVETALRDA--KLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDP 466 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v 466 (593)
++..++++++.+.|.+.|+-. .-...+|++|+|.||++.+-+|.+.+.+.++.+.
T Consensus 259 ~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl~~~t 315 (354)
T COG4972 259 EVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRLSIPT 315 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHhCCCe
Confidence 566777777777777776642 2234678999999999999999999999987543
|
|
| >KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=101.20 Aligned_cols=307 Identities=18% Similarity=0.216 Sum_probs=187.8
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEE-----------eCCcEEecHHHHHhhhhCCCchhhhhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYT-----------KIGDRLVGQIAKRQAVVNPENTFFSVK 180 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~-----------~~~~~~~G~~A~~~~~~~~~~~i~~~K 180 (593)
..+|.+|-||.+.+++++..+-|+.+ +||+|.-. +-.+..+|++|.. ++
T Consensus 4 ~~viV~DnGTGfVKcGyAg~NFP~~~--------FPs~VGRPilR~~e~~g~~~iKD~mvGdease------------lR 63 (389)
T KOG0677|consen 4 RNVIVCDNGTGFVKCGYAGENFPTHI--------FPSIVGRPILRAEEKVGNIEIKDLMVGDEASE------------LR 63 (389)
T ss_pred CCeEEEeCCCceEEeccccCCCcccc--------cchhcCchhhhhhhhccCeehhhheccchHHH------------HH
Confidence 56889999999999999977766544 46665421 0023456776643 23
Q ss_pred hhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhC--CCcCcEEEEeCCCCCH
Q 047555 181 RFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLN--DKITKAVVTVPAYFND 258 (593)
Q Consensus 181 ~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~--~~~~~~viTVPa~~~~ 258 (593)
.+|.-++ |.....+...+-+..++.+-.- +.++ ..-.++.+|-|..-..
T Consensus 64 s~L~i~Y--------------------------PmeNGivrnwddM~h~WDytF~---ekl~idp~~~KiLLTePPmNP~ 114 (389)
T KOG0677|consen 64 SLLDINY--------------------------PMENGIVRNWDDMEHVWDYTFG---EKLKIDPTNCKILLTEPPMNPT 114 (389)
T ss_pred HHHhcCC--------------------------ccccccccChHHHHHHHHhhhh---hhccCCCccCeEEeeCCCCCcc
Confidence 3333221 1122333344444444444332 2222 2234689999999888
Q ss_pred HHHHHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 259 SQRTATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 259 ~~r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
..|+.|.+. ++..||.-+.+.-...-+.++-++... +|+|-|.|-|.+.-+..+ +..-.-.+...+.|+++
T Consensus 115 kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tG-----vVvDSGDGVTHi~PVye~---~~l~HLtrRldvAGRdi 186 (389)
T KOG0677|consen 115 KNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTG-----VVVDSGDGVTHIVPVYEG---FVLPHLTRRLDVAGRDI 186 (389)
T ss_pred ccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccce-----EEEecCCCeeEEeeeecc---eehhhhhhhccccchhH
Confidence 999999887 788999999998888777777666544 999999999998755533 11111234467899999
Q ss_pred HHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc-----------eeeEEeccccccCCCCceeEEEec
Q 047555 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT-----------QANISLPFITATADGPKHIETTLT 406 (593)
Q Consensus 338 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i~i~~~~~~~~~~~~~~~~it 406 (593)
++-|.+++..+ .+...-..+ .+..+.+|+.|+... ++.+-++. ..-++.-.+.+-
T Consensus 187 TryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTvLv~~----YtLPDGRvIkvG 252 (389)
T KOG0677|consen 187 TRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTVLVES----YTLPDGRVIKVG 252 (389)
T ss_pred HHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhheeeeee----eecCCCcEEEec
Confidence 99999888765 111111122 334555566654211 11111111 111112235556
Q ss_pred HHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCCeEEEEeCCCChHhHHHHHHhHhC-------------
Q 047555 407 RAKF---EELCSDLL-----DRLKKPVETALRDAKLSFN--DLDEVILVGGSTRIPAVQELVKKMTG------------- 463 (593)
Q Consensus 407 r~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~~~~--~i~~VvLvGG~s~~p~l~~~l~~~~g------------- 463 (593)
.+.| |.+|+|.+ ..+.+++-++++.+.++.. -..+|+|.||++.-|++..+|++.+.
T Consensus 253 ~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqlyl~rVL~~d~~ 332 (389)
T KOG0677|consen 253 GERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLYLDRVLKGDTD 332 (389)
T ss_pred ceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHHHHHHHcCChh
Confidence 6666 46777754 3467788888888765421 13689999999999999998887652
Q ss_pred ------CCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 464 ------KDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 464 ------~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.++--+..-.+.|-.|.|.+|.++..
T Consensus 333 ~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 333 KLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred hhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 11222233345677888888877654
|
|
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-08 Score=97.46 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=102.8
Q ss_pred EechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCC
Q 047555 278 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVL 357 (593)
Q Consensus 278 li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~ 357 (593)
.++|-+|-+.+...-....+ .|+|+||..+-+..++ ++.+.-.........|+..|.+.+.+.+.-.
T Consensus 74 ~~~ei~~~~~g~~~~~~~~~--~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~--------- 140 (248)
T TIGR00241 74 IVTEISCHGKGANYLAPEAR--GVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVS--------- 140 (248)
T ss_pred ceEEhhHHHHHHHHHCCCCC--EEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCC---------
Confidence 56777776554433322222 5999999999888887 4444333344445667777777666554322
Q ss_pred cCCHHHHHHHHHHHHHHhhhcCCC----ceeeEEec--cccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 358 LNDKQALQRLTEAAEKAKMELSSL----TQANISLP--FITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 358 ~~~~~~~~~L~~~~e~~K~~Ls~~----~~~~i~i~--~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
.++++..+..-... ....+..+ .+..... .. ..++++..+++.+...+.+.+..
T Consensus 141 ----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~l~~-------g~---~~~di~~~~~~~va~~i~~~~~~ 200 (248)
T TIGR00241 141 ----------VEELGSLAEKADRKAKISSMCTVFAESELISLLAA-------GV---KKEDILAGVYESIAERVAEMLQR 200 (248)
T ss_pred ----------HHHHHHHHhcCCCCCCcCCEeEEEechhHHHHHHC-------CC---CHHHHHHHHHHHHHHHHHHHHhh
Confidence 22333333331111 11111110 0000000 01 13566666777777666666654
Q ss_pred cCCCCCCCC-eEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHH
Q 047555 432 AKLSFNDLD-EVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 432 ~~~~~~~i~-~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~ 483 (593)
.+ ++ .|+|+||.++++++.+.+++.++.++..+.+|..+.|+|||++
T Consensus 201 ~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 201 LK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred cC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 43 44 7999999999999999999999999999999999999999973
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.3e-08 Score=104.80 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=61.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHH------------cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEE
Q 047555 247 KAVVTVPAYFNDSQRTATKDAGRI------------AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVL 314 (593)
Q Consensus 247 ~~viTVPa~~~~~~r~~l~~Aa~~------------AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~ 314 (593)
-.+||..+. .++.++++++. ||++.-.++. |.|++.+.+.+ +++..++++|+||||++++++
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-Eke~gVa~IDIGgGTT~iaVf 163 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-ERNTRVLNIDIGGGTANYALF 163 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-hccCceEEEEeCCCceEEEEE
Confidence 367877654 45666666666 5665555555 99999988865 778899999999999999999
Q ss_pred EEcCCEEEEEEecCCCCccHHHHHH
Q 047555 315 EVGDGVFEVLSTSGDTHLGGDDFDK 339 (593)
Q Consensus 315 ~~~~~~~~vl~~~~~~~lGG~~id~ 339 (593)
+-+...+ .+..++||++|+.
T Consensus 164 ~~G~l~~-----T~~l~vGG~~IT~ 183 (475)
T PRK10719 164 DAGKVID-----TACLNVGGRLIET 183 (475)
T ss_pred ECCEEEE-----EEEEecccceEEE
Confidence 9765443 5567899988754
|
|
| >KOG0797 consensus Actin-related protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.75 E-value=8.1e-08 Score=99.43 Aligned_cols=121 Identities=19% Similarity=0.208 Sum_probs=88.6
Q ss_pred eeeHHHHHHHHHHHHHHHHHHHhCCCcC-----cEEEEeCCCCCHHHHHHHHHH-HHHcCCceEEEechhHHHHHHhccc
Q 047555 219 QFAAEEISAQVLRKLVDDASKFLNDKIT-----KAVVTVPAYFNDSQRTATKDA-GRIAGLEVLRIINEPTAASLAYGFE 292 (593)
Q Consensus 219 ~~~~~~l~~~~L~~l~~~a~~~l~~~~~-----~~viTVPa~~~~~~r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~ 292 (593)
.++..++++++-+-+.....+.++.+.. .+|+-||..|...+.+.+... ....||..+.++.|+.|+.+..+..
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 3466666666544333333444554433 489999999998876665554 7788999999999999999988876
Q ss_pred cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q 047555 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347 (593)
Q Consensus 293 ~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~ 347 (593)
.-.|||+|+-+|.++.++.+- ....+.-....||.||++.|+-++++
T Consensus 276 -----s~CVVdiGAQkTsIaCVEdGv---s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 276 -----SACVVDIGAQKTSIACVEDGV---SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred -----ceeEEEccCcceeEEEeecCc---cccCceEEeccCCchHHHHHHHHHHh
Confidence 449999999999999988651 11222333678999999999887775
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-06 Score=86.49 Aligned_cols=74 Identities=19% Similarity=0.287 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 410 FEELCSDLLDRLKKPVET-ALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
.|+++.-+...+.+.+.. +++...+. +-|+|+||.+....+.+++++.++.++.++.+|...-|.|||+++...
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~~ 391 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKEV 391 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhhh
Confidence 466666666666655555 55554432 229999999999999999999999999999999999999999998643
|
|
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-05 Score=80.51 Aligned_cols=71 Identities=18% Similarity=0.309 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCC-CCCCChhHHHhHHHHHhhh
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN-VTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~-~~~~p~~aVA~GAal~a~~ 486 (593)
+++.-+...+.+.+...+.+.++. ..|+|+||.++.+.+.+.+++.++.++. .+.+|..+-|.|||++|..
T Consensus 217 dI~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 217 MVIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 344444444444444444443322 3599999999999999999999998877 5778999999999999864
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-06 Score=87.75 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhh
Q 047555 411 EELCSDLLDRLKKPVET-ALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~-~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
++++.-+...+.+.+.. +++..++. +.|+++||.++.+.+.+.+++.++.++..+.+|+.+-|+|||++|.
T Consensus 331 eDIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 331 EDVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 34444444444444443 33333221 3499999999999999999999999999999999999999999975
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.9e-06 Score=93.64 Aligned_cols=328 Identities=18% Similarity=0.260 Sum_probs=182.2
Q ss_pred ecHHHHHhhhh----CCCchhhhhhhhhCCCC--c---hh-------hhh--hccCceEEEECCCCcEEEEe-------C
Q 047555 160 VGQIAKRQAVV----NPENTFFSVKRFIGRKM--S---EV-------DDE--SKQVSYRVVRDENGNVKLDC-------P 214 (593)
Q Consensus 160 ~G~~A~~~~~~----~~~~~i~~~K~~lg~~~--~---~~-------~~~--~~~~~~~v~~~~~g~~~i~~-------~ 214 (593)
+|.+|.+.... +...-+.+.||+|=... . .. +.+ ....|+.-..+++|.+.... +
T Consensus 332 VG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~p 411 (1002)
T PF07520_consen 332 VGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERLP 411 (1002)
T ss_pred ecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccCc
Confidence 79998776543 22234678888873321 1 00 000 11122222334455543333 1
Q ss_pred CCCeeeeHHHHHHHHHHHHHHHHHHHhCCC--------------cCcEEEEeCCCCCHHHHHHHHHHHHHc--------C
Q 047555 215 AIGKQFAAEEISAQVLRKLVDDASKFLNDK--------------ITKAVVTVPAYFNDSQRTATKDAGRIA--------G 272 (593)
Q Consensus 215 ~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~--------------~~~~viTVPa~~~~~~r~~l~~Aa~~A--------G 272 (593)
.....|+-.-++..+|.+++.+|.-+.+.. ..++++|||......+|+.++++++.| |
T Consensus 412 vf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lG 491 (1002)
T PF07520_consen 412 VFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALG 491 (1002)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 122347788899999999998887766532 345999999999999999999988876 4
Q ss_pred Cc---------------------eEEEechhHHHHHHhccc---------------------c--------CCCceEEEE
Q 047555 273 LE---------------------VLRIINEPTAASLAYGFE---------------------R--------KNNETILVF 302 (593)
Q Consensus 273 l~---------------------~v~li~Ep~AAal~~~~~---------------------~--------~~~~~vlVv 302 (593)
+. +..=-+|.+|.-+-|++. . .+.-.|.-+
T Consensus 492 w~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASI 571 (1002)
T PF07520_consen 492 WHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASI 571 (1002)
T ss_pred CCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEE
Confidence 31 111124555544433321 0 013458899
Q ss_pred eeCCceEEEEEEEEc----CC-EEEEEE---ecCCCCccHHHHHHHHHH-HHHHHhhhh----------------hCCCC
Q 047555 303 DLGGGTFDVSVLEVG----DG-VFEVLS---TSGDTHLGGDDFDKRVVD-WLAENFKRD----------------EGVVL 357 (593)
Q Consensus 303 D~GggT~Dvsv~~~~----~~-~~~vl~---~~~~~~lGG~~id~~l~~-~l~~~~~~~----------------~~~~~ 357 (593)
|+||||||+.|-... .+ ...+.- ..-+-.+.|+||=..+++ ++...+... +|.+-
T Consensus 572 DIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg 651 (1002)
T PF07520_consen 572 DIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDG 651 (1002)
T ss_pred ecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcc
Confidence 999999999887754 22 111111 122356788888666655 443333322 12221
Q ss_pred cCCHHH--------------HHHHHHHHHHHhhhcCCCceeeEE--------------eccccccC----CC-----Cce
Q 047555 358 LNDKQA--------------LQRLTEAAEKAKMELSSLTQANIS--------------LPFITATA----DG-----PKH 400 (593)
Q Consensus 358 ~~~~~~--------------~~~L~~~~e~~K~~Ls~~~~~~i~--------------i~~~~~~~----~~-----~~~ 400 (593)
....+. ..++++++|..-..-.... .... ++++.... .+ .-+
T Consensus 652 ~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~~~~-~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdild 730 (1002)
T PF07520_consen 652 QSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDPSAE-IDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILD 730 (1002)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCcc-ccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceec
Confidence 111100 0124445554332111000 0000 01111000 11 123
Q ss_pred eEEEecHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCC----------
Q 047555 401 IETTLTRAKFEELCS---DLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN---------- 467 (593)
Q Consensus 401 ~~~~itr~~~e~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~---------- 467 (593)
+.+.|+.+++...|. -.+.+....+-+++...+ -|-++|+|--|++|+|+..+++....++.
T Consensus 731 v~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~-----CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~t 805 (1002)
T PF07520_consen 731 VPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYD-----CDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRT 805 (1002)
T ss_pred ceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhC-----CCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeee
Confidence 457889999988775 445555555555555533 45699999999999999999998854322
Q ss_pred ----------CCCCChhHHHhHHHHHhhhhcCCCCc
Q 047555 468 ----------VTVNPDEVVALGAAVQGGVLAGDVSD 493 (593)
Q Consensus 468 ----------~~~~p~~aVA~GAal~a~~l~~~~~~ 493 (593)
...||...||.||.+.......+.++
T Consensus 806 g~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~n 841 (1002)
T PF07520_consen 806 GNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPN 841 (1002)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCC
Confidence 34599999999997765443323333
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.6e-06 Score=86.40 Aligned_cols=71 Identities=17% Similarity=0.184 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-----CCCCCCCCChhHHHhHHHHHh
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-----KDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-----~~v~~~~~p~~aVA~GAal~a 484 (593)
++++.-+...+...+...+.+.. ..-..|+|+||.++.+++.+.|++.++ .++..+.+|+.+-|+|||++|
T Consensus 357 eDIaAGL~~SIA~Rv~s~l~r~~---~i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 357 EDILAGLHRAIILRAISIISRSG---GITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc---CCCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 34444455555555555555432 112459999999999999999999994 567789999999999999975
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.7e-06 Score=80.22 Aligned_cols=321 Identities=16% Similarity=0.157 Sum_probs=162.6
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcE--EecHHHHHhhhhCCCchhhhhhhhhCCCCch
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR--LVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 189 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~--~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~ 189 (593)
...|-+|=|..+.+++.+.+.+|.++ |.++.-++.+.+ ++|.+-.. .|..
T Consensus 3 ~~tiVlDNGay~~KiG~s~~~~p~~v---------pNcl~kaK~~~rr~f~~nei~e------------c~D~------- 54 (400)
T KOG0680|consen 3 TTTIVLDNGAYNIKIGPSTNKKPFVV---------PNCLAKAKFGRRRSFLANEIDE------------CKDI------- 54 (400)
T ss_pred CceEEEcCCceeEEeccCCCCCceec---------cchhhhcccccchhhhhhhhhh------------ccCc-------
Confidence 36788999999999999988888886 666766655442 34433211 0110
Q ss_pred hhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH-H
Q 047555 190 VDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDA-G 268 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~A-a 268 (593)
..+.+..+.....+..++.-..++.++.....-...-.-.++++|-|..--++-.+.+.+. .
T Consensus 55 -----------------ssL~y~rp~erGyLvnW~tq~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilF 117 (400)
T KOG0680|consen 55 -----------------SSLFYRRPHERGYLVNWDTQSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILF 117 (400)
T ss_pred -----------------cceEEeehhhcceeEeehhHHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHH
Confidence 0111222222333445556666666654322100112234689999976555555555444 7
Q ss_pred HHcCCceEEEechhHHHHHH-hccccCC-----CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLA-YGFERKN-----NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~-~~~~~~~-----~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+..+++.+.-.+-.+-+|.. |..+..+ ....+|+|.|-+-|.+.-+-.+...++ +.. ...+||..++..|.
T Consensus 118 Eey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~g~~~~q--aV~-RiDvGGK~LTn~LK 194 (400)
T KOG0680|consen 118 EEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVKGIPYYQ--AVK-RIDVGGKALTNLLK 194 (400)
T ss_pred HHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhcCcchhh--ceE-EeecchHHHHHHHH
Confidence 78888876544433333333 2222222 568999999999988875554322211 111 36799999999998
Q ss_pred HHHHHH-hhhh--------hCCCCcCCHHHHHHHHHHHHHHhhhcCCCc-eeeEEecccc----------ccCCCCceeE
Q 047555 343 DWLAEN-FKRD--------EGVVLLNDKQALQRLTEAAEKAKMELSSLT-QANISLPFIT----------ATADGPKHIE 402 (593)
Q Consensus 343 ~~l~~~-~~~~--------~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-~~~i~i~~~~----------~~~~~~~~~~ 402 (593)
+++.=+ ++-. .+.++.--. ..+.+..+.+|.....+. ....-+|.+. +.....+...
T Consensus 195 E~iSyR~lNvmdET~vVNeiKEdvcfVS---qnF~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qi 271 (400)
T KOG0680|consen 195 ETISYRHLNVMDETYVVNEIKEDVCFVS---QNFKEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQI 271 (400)
T ss_pred HHhhhhhhcccchhhhhhhhhhheEEec---hhhHHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcce
Confidence 877532 1100 000100000 112233333333322111 1111111110 0000111233
Q ss_pred EEecHHHH---HHHHHHHHH-----HHHHHHHHHHHHcCC--CCCCCCeEEEEeCCCChHhHHHHHHhHhC--------C
Q 047555 403 TTLTRAKF---EELCSDLLD-----RLKKPVETALRDAKL--SFNDLDEVILVGGSTRIPAVQELVKKMTG--------K 464 (593)
Q Consensus 403 ~~itr~~~---e~~~~~~~~-----~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~ 464 (593)
++++-+.| |-+|.|--- .|.+.|-+.|....- ...-+..|+++||.++.|+++++|++.+. .
T Consensus 272 i~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~Pe~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v 351 (400)
T KOG0680|consen 272 ITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLPEEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEV 351 (400)
T ss_pred eeecccccccchhhcChhhcCcccCCchHHHHHHHHhCHHHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceE
Confidence 55555555 344444221 122222222222110 01113469999999999999999988762 3
Q ss_pred CCCCCCCChhHHHhHHHHH
Q 047555 465 DPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 465 ~v~~~~~p~~aVA~GAal~ 483 (593)
.+..+.||..-...|+...
T Consensus 352 ~V~~p~dp~~~~W~~g~~~ 370 (400)
T KOG0680|consen 352 SVSVPEDPITFAWEGGSEF 370 (400)
T ss_pred EEecCCCcceeeehhcccc
Confidence 4555667765555555444
|
|
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-05 Score=77.39 Aligned_cols=195 Identities=19% Similarity=0.218 Sum_probs=107.0
Q ss_pred HHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHH
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l 345 (593)
+.-+..|.++..-=-|+++|.+..+.....+..+.++|+|||+||.+++...+... -+.-.| .|+-++..+..
T Consensus 103 ~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii~~~g~v~-~iHlAG----AG~mVTmlI~s-- 175 (332)
T PF08841_consen 103 ELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASIINRDGEVT-AIHLAG----AGNMVTMLINS-- 175 (332)
T ss_dssp HHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE-TTS-EE-EEEEE-----SHHHHHHHHHH--
T ss_pred HHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHhCCCCcEE-EEEecC----CchhhHHHHHH--
Confidence 33456688888888999999999999888888999999999999999998665432 221122 35555554432
Q ss_pred HHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCC-----------CceeeEEeccccc---------cCCCCceeEEEe
Q 047555 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSS-----------LTQANISLPFITA---------TADGPKHIETTL 405 (593)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~-----------~~~~~i~i~~~~~---------~~~~~~~~~~~i 405 (593)
++. ++ + +..+|.+|+-=-. +....+.-..+.. ..++-..+...+
T Consensus 176 --ELG----l~---d-------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~~~ 239 (332)
T PF08841_consen 176 --ELG----LE---D-------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPGDL 239 (332)
T ss_dssp --HCT-----S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESSTS
T ss_pred --hhC----CC---C-------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCCc
Confidence 222 11 1 4567777763110 0111110000000 000001111223
Q ss_pred cHHHHHHHHHHHHHHH-HHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChh
Q 047555 406 TRAKFEELCSDLLDRL-KKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDE 474 (593)
Q Consensus 406 tr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~ 474 (593)
+-+++..+=+..-+++ ..-..++|++.... ..+|+.|+|+||++.-.-|.+++.+.+. .++.-..-|..
T Consensus 240 ~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGPRN 319 (332)
T PF08841_consen 240 SLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGPRN 319 (332)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTTST
T ss_pred cHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCchH
Confidence 3444444433333322 22333444443322 4678999999999988888888888773 24555678999
Q ss_pred HHHhHHHHH
Q 047555 475 VVALGAAVQ 483 (593)
Q Consensus 475 aVA~GAal~ 483 (593)
|||.|.++.
T Consensus 320 AVATGLvls 328 (332)
T PF08841_consen 320 AVATGLVLS 328 (332)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999875
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00016 Score=72.76 Aligned_cols=48 Identities=23% Similarity=0.366 Sum_probs=42.7
Q ss_pred CCCeEEEEe-CCCChHhHHHHHHhHh---CCCCCCCCCChhHHHhHHHHHhh
Q 047555 438 DLDEVILVG-GSTRIPAVQELVKKMT---GKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 438 ~i~~VvLvG-G~s~~p~l~~~l~~~~---g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
.++.|+++| |.+..|.+++.+.+.+ +.++..+.+|..+.|+|||+++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356799999 7999999999999988 57788899999999999999875
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00028 Score=69.74 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-C----CCCCCCChhHHHhHHHHHh
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-D----PNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~----v~~~~~p~~aVA~GAal~a 484 (593)
++++.-+.+.+.+.+...+++.+.. -+.|+|+||.++.+.+.+.|++.++. + +..+.+|+.+-|+|||++|
T Consensus 187 edI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 187 PNILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 3444444555555444445543211 13599999999999999999998842 2 5556789999999999975
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0035 Score=67.66 Aligned_cols=90 Identities=18% Similarity=0.215 Sum_probs=57.1
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCC--------------
Q 047555 402 ETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN-------------- 467 (593)
Q Consensus 402 ~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~-------------- 467 (593)
.+.|.-.++++.+-..--.+......+.+..+. .+-|-++|+|--+++|+++..++.....++.
T Consensus 744 pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~--y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrvg~WY 821 (1014)
T COG4457 744 PLAIDLSQLHECFLSGDYDITGVFDALCEAINH--YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRVGTWY 821 (1014)
T ss_pred ceeccHHHHHHHHhhCcccccchHHHHHHHHhh--hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceecccee
Confidence 356677777666544311233333333333222 2345699999999999999999987754322
Q ss_pred ------CCCCChhHHHhHHHHHhhhhcCCCCc
Q 047555 468 ------VTVNPDEVVALGAAVQGGVLAGDVSD 493 (593)
Q Consensus 468 ------~~~~p~~aVA~GAal~a~~l~~~~~~ 493 (593)
+..||...+|.||.+.+..+.-+.++
T Consensus 822 PF~k~grIddPKtTAaVGAMLC~Lsl~~rl~n 853 (1014)
T COG4457 822 PFRKQGRIDDPKTTAAVGAMLCALSLELRLPN 853 (1014)
T ss_pred cccccCcCCCcchHHHHHHHHHHHHhhccCcc
Confidence 23599999999998877654443333
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00081 Score=71.14 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=58.3
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCceEEE---echhHHHHHHhccc---cCCCceEEEEeeCCceEEEEEEEEcCCE
Q 047555 247 KAVVTVPAYFNDSQRTATKDAGRIAGLEVLRI---INEPTAASLAYGFE---RKNNETILVFDLGGGTFDVSVLEVGDGV 320 (593)
Q Consensus 247 ~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~l---i~Ep~AAal~~~~~---~~~~~~vlVvD~GggT~Dvsv~~~~~~~ 320 (593)
-+.||==+.-.+.+++.+...+..||==++.- -.|+.-|+...+.. .+.+..++=+|+||||+.+++++.++..
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~v~ 166 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGEVI 166 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCEEE
Confidence 36777766667888888888888887422221 24666666544432 3457889999999999999999976422
Q ss_pred EEEEEecCCCCccHHHH
Q 047555 321 FEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 321 ~~vl~~~~~~~lGG~~i 337 (593)
+ .++.++||+.|
T Consensus 167 ----~-T~cl~IGGRLi 178 (473)
T PF06277_consen 167 ----D-TACLDIGGRLI 178 (473)
T ss_pred ----E-EEEEeeccEEE
Confidence 2 34467777543
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.025 Score=56.80 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=39.2
Q ss_pred CCCCeEEEEeC-CCChHhHHHHHHhHh---CCCCCCCCCChhHHHhHHHH
Q 047555 437 NDLDEVILVGG-STRIPAVQELVKKMT---GKDPNVTVNPDEVVALGAAV 482 (593)
Q Consensus 437 ~~i~~VvLvGG-~s~~p~l~~~l~~~~---g~~v~~~~~p~~aVA~GAal 482 (593)
..+..|+++|| ....|.+++.+...+ +.+...+.+....+|.||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 45788999999 577899999998876 46677888999999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0017 Score=68.59 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=114.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC-----cEEecHHHHHhhhhCCCchhhhhhhhhCC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG-----DRLVGQIAKRQAVVNPENTFFSVKRFIGR 185 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~-----~~~~G~~A~~~~~~~~~~~i~~~K~~lg~ 185 (593)
+...|.||.|+..+.++|+....|.++ ++.+++-..++ ..++|..-. .+-+.
T Consensus 22 n~~piVIDNGS~~~RaGw~ge~eP~lv--------FrNvl~r~Rdrk~~~s~t~vgnd~~---------------~~~~~ 78 (645)
T KOG0681|consen 22 NTIPIVIDNGSYECRAGWAGEKEPRLV--------FRNVLTRPRDRKLGASVTLVGNDIL---------------NFQGV 78 (645)
T ss_pred CCCcEEEeCCceeEeecccCCCCccch--------hhhhhccccccccccccccccchhh---------------hhhhh
Confidence 477899999999999999977677765 45555432221 112333221 11010
Q ss_pred CCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCc-CcEEEEeCCCCCHHHHHHH
Q 047555 186 KMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKI-TKAVVTVPAYFNDSQRTAT 264 (593)
Q Consensus 186 ~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~-~~~viTVPa~~~~~~r~~l 264 (593)
. ... ..|..+..++..+++..+|.++..+.--. +..+ ..+++|-+..-....|+.|
T Consensus 79 R------s~~----------------rSPFd~nVvtNwel~E~ilDY~F~~LG~~-~~~idhPIilTE~laNP~~~R~~m 135 (645)
T KOG0681|consen 79 R------SSP----------------RSPFDRNVVTNWELMEQILDYIFGKLGVD-GQGIDHPIILTEALANPVYSRSEM 135 (645)
T ss_pred h------ccC----------------CCCCcCCccccHHHHHHHHHHHHHhcCCC-ccCCCCCeeeehhccChHHHHHHH
Confidence 0 001 11222555678888888888776643211 1112 3489999977777889998
Q ss_pred HHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 265 KDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 265 ~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
.+. ++..|++.+.+=-...=+.+. -.....+..-+|+++|..+|.|..+..+...+ ......++||.....-|.+
T Consensus 136 ~elLFE~YgvP~V~yGIDslfS~~h-N~~~~~~~~~liis~g~~~T~vipvldG~~il---~~~kRiN~GG~qa~dYL~~ 211 (645)
T KOG0681|consen 136 VELLFETYGVPKVAYGIDSLFSFYH-NYGKSSNKSGLIISMGHSATHVIPVLDGRLIL---KDVKRINWGGYQAGDYLSR 211 (645)
T ss_pred HHHHHHHcCCcceeechhhHHHHhh-ccCcccCcceEEEecCCCcceeEEEecCchhh---hcceeeccCcchHHHHHHH
Confidence 887 677899887654443333221 11122244789999999999998887665432 2233478899887777766
Q ss_pred HHHHH
Q 047555 344 WLAEN 348 (593)
Q Consensus 344 ~l~~~ 348 (593)
++..+
T Consensus 212 Lmq~K 216 (645)
T KOG0681|consen 212 LMQLK 216 (645)
T ss_pred HHhcc
Confidence 66543
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.24 Score=49.89 Aligned_cols=71 Identities=18% Similarity=0.260 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh-----CCCCCCCCCChhHHHhHHHHHh
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT-----GKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~-----g~~v~~~~~p~~aVA~GAal~a 484 (593)
.++++...+.+.+.+...+.+...... .|+|+||..+...+++.+++.+ ..++.....|....+.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 456666677777777777776553321 2999999999987777775444 3455667889999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0025 Score=63.35 Aligned_cols=196 Identities=20% Similarity=0.227 Sum_probs=105.6
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhhhh
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDDES 194 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~~~ 194 (593)
+-||.||.+++..++.+..|..+ +|++++... ...++..+..... ....++..++|... +.
T Consensus 7 ~V~d~Gtgytklg~agn~~p~~i--------~p~~ia~~~--~~~~s~~~~~~~~----~~~~dldf~ig~ea--l~--- 67 (415)
T KOG0678|consen 7 CVIDNGTGYTKLGYAGNTEPQFI--------IPTAIAVKE--SAAVSSKATRRVK----RGTEDLDFFIGDEA--LD--- 67 (415)
T ss_pred eeeccCcceeeeeccccCCcccc--------cceeEEecc--ccccccchhhhhh----ccccccceecccHH--Hh---
Confidence 78999999999999888777665 588887652 1223332221100 00011111111110 00
Q ss_pred ccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCC--cCcEEEEeCCCCCHHHHHHHHHHH-HHc
Q 047555 195 KQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDK--ITKAVVTVPAYFNDSQRTATKDAG-RIA 271 (593)
Q Consensus 195 ~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~--~~~~viTVPa~~~~~~r~~l~~Aa-~~A 271 (593)
.+...+..+.....+-..+++..|+++-+= .++..+ -....+|.|..-.++.|+-+.+.. +..
T Consensus 68 -----------~~~ysl~ypiRhg~ve~wd~mer~~~q~if---kylr~ePedh~fLlteppln~penreytaeImfEsf 133 (415)
T KOG0678|consen 68 -----------ATTYSLKYPIRHGQVEDWDLMERFWEQCIF---KYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESF 133 (415)
T ss_pred -----------hcccccccceeccccccHHHHHHHHhhhhh---hhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhc
Confidence 011112222223334456677777665322 222222 234789999888888888888773 333
Q ss_pred CCceEEEechhHHHHHHhccccC----CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q 047555 272 GLEVLRIINEPTAASLAYGFERK----NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~----~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~ 347 (593)
+...+.+.-...- |++..+... ..-.=+|+|-|.|-+.+..+..+ +.+.+.-....+.|++++.-+..++++
T Consensus 134 nvpglyiAVqavL-ALaaswts~~v~er~ltG~VidsGdgvThvipvaEg---yVigScik~iPiagrdiT~fiQ~llRe 209 (415)
T KOG0678|consen 134 NVPGLYIAVQAVL-ALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVAEG---YVIGSCIKHIPIAGRDITYFIQQLLRE 209 (415)
T ss_pred cCchHHHHHHHHH-HHHHHHHHhhhhhheeeeEEEecCCCeeEEEEeecc---eEEeeeeccccccCCchhHHHHHHhhC
Confidence 3333222222221 222222211 12334799999999988777644 444444566889999999877666644
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0012 Score=63.19 Aligned_cols=76 Identities=18% Similarity=0.264 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 410 FEELCSDLLDRLKKPVETALRDAKLS-FNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
..+++.-+++.+.-.++..++...-. ...++.|+++||.++.+.+.+.+.+.++.++.+... .++.+.|||+.|+.
T Consensus 120 ~~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 120 RADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 45555666666665555555544211 245889999999999999999999999988876555 88999999999874
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.08 Score=58.23 Aligned_cols=78 Identities=19% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHcCCceEEEechhHHHHHHhcccc--CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHH
Q 047555 259 SQRTATKDAGRIAGLEVLRIINEPTAASLAYGFER--KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 336 (593)
Q Consensus 259 ~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~--~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~ 336 (593)
...+.+.++-+..|++.-.+--|-+|-..+.+... ...+..+|+|+|||+|.+++++-+... ...+..+|.-.
T Consensus 92 N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vr 166 (496)
T PRK11031 92 NADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT-----SLFSLSMGCVT 166 (496)
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee-----eeeEEeccchH
Confidence 34556667777789998555555555544443321 223468999999999999998744322 23447888877
Q ss_pred HHHHH
Q 047555 337 FDKRV 341 (593)
Q Consensus 337 id~~l 341 (593)
+.+.|
T Consensus 167 l~e~f 171 (496)
T PRK11031 167 WLERY 171 (496)
T ss_pred HHHHh
Confidence 76655
|
|
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0082 Score=65.96 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
.++++.+++.+.-.++..++........++.|+++||+++++...+.+.+.+|.++....+.+++.++|||+.|+.-.|.
T Consensus 359 ~~l~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~lA~~~~G~ 438 (484)
T PRK15027 359 NELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHHHHHhcCC
Confidence 33444444444444444333322122347889999999999999999999999999766677778899999999876553
|
|
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.015 Score=62.21 Aligned_cols=43 Identities=33% Similarity=0.662 Sum_probs=32.2
Q ss_pred EEEEEcCccceEEEEEE--CCeeEEEeCCCCCccceEEEEEEeCCcEEecHH
Q 047555 114 VVGIDLGTTNSAVAAME--GGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQI 163 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~--~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~ 163 (593)
++.+|||+|+|++..++ .+..+++ |....||.| .+ ++...|..
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~i----g~a~apTTv--~~-~Dv~~G~~ 46 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLI----GQAEAPTTV--EP-GDVTIGLN 46 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEE----EEEeCCCCc--Cc-ccHHHHHH
Confidence 68899999999999998 7777777 344568877 22 45666654
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=64.80 Aligned_cols=83 Identities=16% Similarity=0.231 Sum_probs=64.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhh
Q 047555 406 TRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 406 tr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~ 485 (593)
+|..+.+++..+++.+.=.++..++...-....++.|.++||.++++...+.+.+.+|.++.+..++ ++.++|||+.|+
T Consensus 411 ~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~ 489 (541)
T TIGR01315 411 SKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYVN-EAVLHGAAMLGA 489 (541)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHHCCeeEecChh-HHHHHHHHHHHH
Confidence 4666777888888777766666665543223457889999999999999999999999999876665 477999999998
Q ss_pred hhcC
Q 047555 486 VLAG 489 (593)
Q Consensus 486 ~l~~ 489 (593)
.-.|
T Consensus 490 ~~~G 493 (541)
T TIGR01315 490 KAAG 493 (541)
T ss_pred HhcC
Confidence 6554
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.27 Score=52.29 Aligned_cols=58 Identities=21% Similarity=0.283 Sum_probs=41.2
Q ss_pred eEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHH
Q 047555 401 IETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVK 459 (593)
Q Consensus 401 ~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~ 459 (593)
-.+.||..+++++. ---..+..-++-+|++++++..+|++|+|.||++..=-.++.+.
T Consensus 291 ~~i~itq~DIr~~q-lAKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 291 DDIYITQKDIREFQ-LAKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp S-EEEEHHHHHHHH-HHHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCEEEeHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 35899999997754 33456777888899999999999999999999998666666554
|
|
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.063 Score=53.85 Aligned_cols=84 Identities=21% Similarity=0.237 Sum_probs=48.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEE---EechhHHHHHHhccc---cCCCceEEEEeeCCceEEEEEEEEcCCEE
Q 047555 248 AVVTVPAYFNDSQRTATKDAGRIAGLEVLR---IINEPTAASLAYGFE---RKNNETILVFDLGGGTFDVSVLEVGDGVF 321 (593)
Q Consensus 248 ~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~---li~Ep~AAal~~~~~---~~~~~~vlVvD~GggT~Dvsv~~~~~~~~ 321 (593)
+.||=-..-....|..+......||==++. --.|+.-|.-..+.+ .+....++=+|+||||+.++++..++..
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gkv~- 168 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGKVS- 168 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccccc-
Confidence 566655555556666665555555532211 123555444433322 3446778899999999999999866421
Q ss_pred EEEEecCCCCccHHH
Q 047555 322 EVLSTSGDTHLGGDD 336 (593)
Q Consensus 322 ~vl~~~~~~~lGG~~ 336 (593)
...+..+||+-
T Consensus 169 ----dTaCLdiGGRL 179 (473)
T COG4819 169 ----DTACLDIGGRL 179 (473)
T ss_pred ----cceeeecCcEE
Confidence 23335566654
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.022 Score=63.53 Aligned_cols=72 Identities=15% Similarity=0.256 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
+++.+++.+.=.++..++..+.. ..++.|+++||+++++.+.+.+.+.||.++.+...+ ++.++|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCCC-CchHHHHHHHHHH
Confidence 45555555554445555444332 457899999999999999999999999988877666 6789999999976
|
|
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.15 Score=54.98 Aligned_cols=86 Identities=23% Similarity=0.287 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 407 RAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 407 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
.+.+..+....+..+.--.+..++...-....|+.|+.+||-.+.|.+.+.+.+..|.++... ..+++++.|+|+.++.
T Consensus 400 ~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~Id~l~~sGG~~KN~llmql~aDvtg~~v~i~-~s~~a~llGsAm~~av 478 (544)
T COG1069 400 PESLALLYRALLEATAFGTRAIIETFEDQGIAIDTLFASGGIRKNPLLMQLYADVTGRPVVIP-ASDQAVLLGAAMFAAV 478 (544)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCeeeEEEecCCcccCHHHHHHHHHhcCCeEEee-cccchhhhHHHHHHHH
Confidence 344445555555555433333333333344568999999999999999999999999888765 6677999999999987
Q ss_pred hcCCCCc
Q 047555 487 LAGDVSD 493 (593)
Q Consensus 487 l~~~~~~ 493 (593)
-.+..++
T Consensus 479 Aag~~~d 485 (544)
T COG1069 479 AAGVHPD 485 (544)
T ss_pred HhccCcc
Confidence 6664333
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.015 Score=50.93 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=27.5
Q ss_pred EEEEeeCCceEEEEEEEEcCC-EEEEEEecCCCCcc--HHHHH--HHHHHHHHHH
Q 047555 299 ILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLG--GDDFD--KRVVDWLAEN 348 (593)
Q Consensus 299 vlVvD~GggT~Dvsv~~~~~~-~~~vl~~~~~~~lG--G~~id--~~l~~~l~~~ 348 (593)
++++|+|++++.+.+++.+.. .++++.......-| +.+|. +.+.+-+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a 55 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIA 55 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHH
Confidence 589999999999999997533 34444322111111 67776 6665554443
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.029 Score=61.96 Aligned_cols=78 Identities=22% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
+++..+++.+.-.++..++...- ....++.|+++||.++++.+.+.+.+.+|.++....++ ++.++|||+.|+.-.|.
T Consensus 379 ~i~rAvlEgia~~~r~~~~~l~~~~g~~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 379 HIVRAALEAIALQTNDVIESMEKDAGIELNSLRVDGGLTKNKLLMQFQADILGKDIVVPEMA-ETTALGAALLAGLAVGV 457 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCcceEEEecccccCHHHHHHHHHHhCCceEecCcc-cchHHHHHHHHHhhcCc
Confidence 34445555554444444443221 12247889999999999999999999999998766644 47899999999876554
|
|
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.031 Score=61.70 Aligned_cols=79 Identities=23% Similarity=0.234 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAK-LSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.-.++..++... .....++.|.++||.++++.+.+.+.+.+|.++.....+ ++.++|||+.|+.-.|
T Consensus 375 ~~l~rAvlEgia~~~r~~~e~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~a~GaA~~A~~~~G 453 (498)
T PRK00047 375 EHIIRATLESIAYQTRDVLDAMQADSGIRLKELRVDGGAVANNFLMQFQADILGVPVERPVVA-ETTALGAAYLAGLAVG 453 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecCcccCHHHHHHHHHhhCCeeEecCcc-cchHHHHHHHHhhhcC
Confidence 44555555555555544444432 112347889999999999999999999999998755544 6889999999987555
Q ss_pred C
Q 047555 490 D 490 (593)
Q Consensus 490 ~ 490 (593)
.
T Consensus 454 ~ 454 (498)
T PRK00047 454 F 454 (498)
T ss_pred c
Confidence 3
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.028 Score=61.97 Aligned_cols=79 Identities=18% Similarity=0.208 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.-.++..++.... ....++.|.++||.++++.+.+.+.+.+|.++..... .++.++|||+.|+.-.|
T Consensus 371 ~~l~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~~-~e~~alGaA~~a~~~~G 449 (493)
T TIGR01311 371 AHIARAALEAIAFQTRDVLEAMEKDAGVEITKLRVDGGMTNNNLLMQFQADILGVPVVRPKV-TETTALGAAYAAGLAVG 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEecccccCHHHHHHHHHhcCCeeEecCC-CcchHHHHHHHHHhhcC
Confidence 344444555554444444443321 1234788999999999999999999999999876555 46789999999887555
Q ss_pred C
Q 047555 490 D 490 (593)
Q Consensus 490 ~ 490 (593)
.
T Consensus 450 ~ 450 (493)
T TIGR01311 450 Y 450 (493)
T ss_pred c
Confidence 3
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.034 Score=61.09 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.++++.+++.+.-.++..++...- ....++.|+++||.++++.+.+.+.+.+|.++.... ..++.++|||+.|+.-.+
T Consensus 362 ~~l~railEgia~~~~~~~~~l~~~~~~~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~GaA~~a~~~~g 440 (481)
T TIGR01312 362 ADLTRAVLEGVTFALRDSLDILREAGGIPIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGAAILAAWALG 440 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHHHHHHHHhcC
Confidence 334444444444444444433221 113478899999999999999999999999887655 556889999999987655
Q ss_pred C
Q 047555 490 D 490 (593)
Q Consensus 490 ~ 490 (593)
.
T Consensus 441 ~ 441 (481)
T TIGR01312 441 E 441 (481)
T ss_pred C
Confidence 3
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.031 Score=62.23 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCC-CChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGS-TRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
++++.+++.+.-.++..++........++.|+++||+ ++++.+.+.+.+.||.++.+..++ ++.++|||+.|+.-.|.
T Consensus 409 ~~~RAvlEgia~~~~~~l~~l~~~g~~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~~-e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 409 LLYRALIEATAFGTRMIMETFTDSGVPVEELMAAGGIARKNPVIMQIYADVTNRPLQIVASD-QAPALGAAIFAAVAAGV 487 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEeCCccccCHHHHHHHHHhhCCeeEeccCC-cchhHHHHHHHHHHcCC
Confidence 3445555554444444444332222457899999999 999999999999999998766665 57899999999876553
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.033 Score=62.28 Aligned_cols=77 Identities=22% Similarity=0.312 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCC-CChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGS-TRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
++++.+++.+.-.+...++........++.|+++||+ ++++.+.+.+.+.+|.++.+..+ .++.++|||+.|+.-.|
T Consensus 412 ~l~RAvlEgia~~~~~~~e~l~~~g~~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA~~~~G 489 (548)
T PRK04123 412 DIYRALIEATAFGTRAIMECFEDQGVPVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVAS-DQCPALGAAIFAAVAAG 489 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEeCCCcccCHHHHHHHHHhcCCceEecCc-cccchHHHHHHHHHHhc
Confidence 4455555555544444444332222357889999999 99999999999999998865554 56889999999987555
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.14 Score=56.62 Aligned_cols=78 Identities=19% Similarity=0.273 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHcCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHH
Q 047555 259 SQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 336 (593)
Q Consensus 259 ~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~ 336 (593)
...+.+.++-+..|++.-.+--|-+|...+.+.. ....+..+|+|+|||+|.+++++-++... ..+..+|...
T Consensus 97 N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~~~-----~~S~~lG~vr 171 (513)
T PRK10854 97 NATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPIL-----VESRRMGCVS 171 (513)
T ss_pred CHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCeeE-----eEEEecceee
Confidence 3455566666777998854444555544444332 22235689999999999999988543222 1113667666
Q ss_pred HHHHH
Q 047555 337 FDKRV 341 (593)
Q Consensus 337 id~~l 341 (593)
+.+.+
T Consensus 172 l~e~f 176 (513)
T PRK10854 172 FAQLY 176 (513)
T ss_pred HHhhh
Confidence 66544
|
|
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.037 Score=60.50 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLS-FNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.-.++..++...-. ...++.|.++||+++++.+.+.+.+.+|.++.+..++ ++.++|||+.|+.-.|
T Consensus 365 ~~l~rAvlEgia~~~r~~~e~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 365 GHIYRAALEGLTAQLKRNLQMLEQIGQFKASELLLVGGGSKNTLWNQIRANMLDIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceEEEecCccCCHHHHHHhhhhcCCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 4455555555544444444332211 2247889999999999999999999999998766665 6779999999987555
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.04 Score=60.34 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.-.++..++...- ....++.|.++||+++++.+.+.+.+.+|.++.....+ ++.++|||+.|+.-.|
T Consensus 361 ~~l~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~~~-e~~a~GaA~la~~~~G 439 (470)
T PRK10331 361 GHFYRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANMLDIPIKVLDDA-ETTVAGAAMFGWYGVG 439 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhcCCeeEecCcc-cchHHHHHHHHHHhcC
Confidence 334455555554444444443321 12357889999999999999999999999998766654 5889999999987555
|
|
| >KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.015 Score=61.77 Aligned_cols=66 Identities=24% Similarity=0.298 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHcCCCC--CCCCeEEEEeCCCChHhHHHHHHhHh------C--CCCCCCCCChhHHHhHHHHHhhh
Q 047555 421 LKKPVETALRDAKLSF--NDLDEVILVGGSTRIPAVQELVKKMT------G--KDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~--~~i~~VvLvGG~s~~p~l~~~l~~~~------g--~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
+.+++...|....... .-++.|+|+||++++|++.++|++.+ | ..|....||...+.+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 4445555555432221 12788999999999999999999876 2 34667789999999999999886
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.048 Score=59.40 Aligned_cols=53 Identities=17% Similarity=0.259 Sum_probs=44.7
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVS 492 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~ 492 (593)
.++.|.++||+++++.+.+.+.+.+|.++... +.++.++|||+.|+.-.|..+
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~GaA~~a~~~~G~~~ 439 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTLGNIGVQLMALDEIN 439 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHHHHHHHHHHhcCCcC
Confidence 47889999999999999999999999998643 367889999999987655433
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.046 Score=60.45 Aligned_cols=52 Identities=19% Similarity=0.219 Sum_probs=45.3
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
.++.|+++||.++++.+.+.+.+.+|.++.+..++ ++.++|||+.|+.-.|.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 57899999999999999999999999998766655 58899999999876553
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.068 Score=57.69 Aligned_cols=79 Identities=22% Similarity=0.314 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCC-CCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSF-NDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~-~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
+.+....++.+.-.++..|+...... ..|+.+.+.||.++.+.+.+.+.+.+|.++..+.+.+. ++.|||+.|+..++
T Consensus 386 ~hia~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 386 EHLARAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcC
Confidence 44444556666655555555444333 46888999999999999999999999999999999988 99999999998776
Q ss_pred C
Q 047555 490 D 490 (593)
Q Consensus 490 ~ 490 (593)
.
T Consensus 465 ~ 465 (516)
T KOG2517|consen 465 K 465 (516)
T ss_pred C
Confidence 5
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.068 Score=59.20 Aligned_cols=79 Identities=22% Similarity=0.254 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcC----C--CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHH
Q 047555 410 FEELCSDLLDRLKKPVETALRDAK----L--SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~~----~--~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~ 483 (593)
-.++++.+++.+.=.++..++... . ....++.|.++||+++++.+.+.+.+.+|.++..... .++.++|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~~-~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPAD-IETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecCc-cccHHHHHHHH
Confidence 344445555555444444444322 1 1234788999999999999999999999999965554 46889999999
Q ss_pred hhhhcC
Q 047555 484 GGVLAG 489 (593)
Q Consensus 484 a~~l~~ 489 (593)
|+.-.|
T Consensus 457 A~~~~G 462 (512)
T PLN02295 457 AGLAVG 462 (512)
T ss_pred HHhhcC
Confidence 887655
|
|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.24 Score=50.78 Aligned_cols=76 Identities=21% Similarity=0.236 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCceEEEechhHHHHHHhc-ccc-CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 260 QRTATKDAGRIAGLEVLRIINEPTAASLAYG-FER-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 260 ~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~-~~~-~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
....+.+.-+..|++. .+++..+=|.+.|. ... -.....+++|+|||++.++++.-++.. ...+.++|...+
T Consensus 87 ~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~-----~~~Sl~lG~vrl 160 (300)
T TIGR03706 87 GPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG-----EGVSLPLGCVRL 160 (300)
T ss_pred HHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe-----EEEEEccceEEh
Confidence 3444555556679877 46655555444442 211 112235999999999999988644322 233466777666
Q ss_pred HHHH
Q 047555 338 DKRV 341 (593)
Q Consensus 338 d~~l 341 (593)
.+.|
T Consensus 161 ~e~f 164 (300)
T TIGR03706 161 TEQF 164 (300)
T ss_pred HHhh
Confidence 6554
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.072 Score=59.12 Aligned_cols=78 Identities=24% Similarity=0.286 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAK-LSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+++..+++.+.=.++..++... .....++.|+++||+++++...+.+.+.+|.++....++ ++.++|||+.|+.-.|
T Consensus 381 ~~~~RAvlEgia~~~~~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~~-e~~alGaA~lA~~~~G 459 (520)
T PRK10939 381 ATLFRALEENAAIVSACNLQQIAAFSGVFPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVVK-EATALGCAIAAGVGAG 459 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeCCcccCHHHHHHHHHhcCCeeEEeccc-CchHHHHHHHHHHHhC
Confidence 33444444444433333333221 112347889999999999999999999999999766655 5779999999987655
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.096 Score=57.33 Aligned_cols=76 Identities=16% Similarity=0.149 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 413 LCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
+++-+++.+.-.++..++.... ....++.|.++||+++++.+.+.+.+.+|.++.... .++.++||++.|+.-.|.
T Consensus 349 l~RAvlEgva~~~r~~l~~l~~~~g~~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 349 LARCIFDSLALLYADVLHELAQLRGEPFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 4444444444444444433221 123478899999999999999999999999986543 378899999998875553
|
|
| >PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.16 Score=51.81 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCC-CCCCCCChhHHHhHHHHH
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD-PNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~-v~~~~~p~~aVA~GAal~ 483 (593)
.+++-..+.+.+.|++.....+....+ -.++.+||.+ |.+...+.+.+|.+ +..+..+.-+.|.||++-
T Consensus 215 ~i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 215 GIVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EEE-E--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 344445555566666654444433222 1255566665 78888999999875 444555788899999853
|
5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B. |
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.13 Score=48.66 Aligned_cols=31 Identities=35% Similarity=0.309 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHH
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLA 288 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~ 288 (593)
....+.+.++++.+|++...++.+|.|++.+
T Consensus 156 ~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 156 KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 4578889999999999999999999998754
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=93.54 E-value=2.5 Score=43.96 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhHHHHHhhhhcC
Q 047555 421 LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~GAal~a~~l~~ 489 (593)
+.+.++.+++. ..++.|+|+||.++..++++.|.+.+ +.++..+. --|.++++|++=+-....|
T Consensus 242 l~~~~~~~~~~-----~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 242 LVIKTKRALKQ-----TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred HHHHHHHHHHH-----hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 33444444443 34678999999999999999999988 44444333 3467888888744333333
|
|
| >PRK13321 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.29 E-value=4.3 Score=40.49 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEECC
Q 047555 114 VVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g 132 (593)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999865
|
|
| >KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.18 E-value=0.27 Score=51.61 Aligned_cols=55 Identities=18% Similarity=0.304 Sum_probs=46.4
Q ss_pred HcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 431 DAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 431 ~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
..+........|+.|||.|+...|-+.|.+.||.++... +-.++.+.|+|++|+.
T Consensus 435 ~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 435 PLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred cccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 344455567899999999999999999999999988765 6777889999999764
|
|
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.39 Score=53.05 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=38.3
Q ss_pred CCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 437 NDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
..++.|+++||+++++...+++.+.+|.++......+.+.+-||++.+..
T Consensus 400 ~~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~~e~~a~g~A~~~~~~ 449 (502)
T COG1070 400 KPPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAA 449 (502)
T ss_pred CCccEEEEECCcccCHHHHHHHHHHcCCeeEecCcccchHHHHHHHHHHH
Confidence 44678999999999999999999999999885555555555555544443
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.037 Score=48.39 Aligned_cols=61 Identities=16% Similarity=0.291 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcC---CceEE---------Eechh-HHHHHH
Q 047555 224 EISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAG---LEVLR---------IINEP-TAASLA 288 (593)
Q Consensus 224 ~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AG---l~~v~---------li~Ep-~AAal~ 288 (593)
+-++..|+..++.+++..+.++.++.+++ .....+.+.++++..+ ++.-. ++.+| .|+|++
T Consensus 46 ~~i~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 46 EDISKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 34455555556666665555555555555 5556666777777776 66656 67788 787765
|
|
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.34 Score=49.20 Aligned_cols=76 Identities=24% Similarity=0.315 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCceEEEechhHHHHHHhcc--ccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHH
Q 047555 261 RTATKDAGRIAGLEVLRIINEPTAASLAYGF--ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338 (593)
Q Consensus 261 r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~--~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id 338 (593)
...+.++-+..|++.-.+-.|-+|...+.+. ........+|+|+|||+|.+++++-+... ...+.++|.-.+.
T Consensus 74 ~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vrl~ 148 (285)
T PF02541_consen 74 DEFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV-----FSQSLPLGAVRLT 148 (285)
T ss_dssp HHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE-----EEEEES--HHHHH
T ss_pred HHHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee-----EeeeeehHHHHHH
Confidence 3445556667799885555555554333222 12246788999999999999988744322 1334678888877
Q ss_pred HHH
Q 047555 339 KRV 341 (593)
Q Consensus 339 ~~l 341 (593)
+.+
T Consensus 149 e~~ 151 (285)
T PF02541_consen 149 ERF 151 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.96 E-value=2.7 Score=41.76 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=37.2
Q ss_pred CCCCCeEEEEeCCCChHhHHHHHHhHhC--CC--CCCCCCChhHHHhHHHHH
Q 047555 436 FNDLDEVILVGGSTRIPAVQELVKKMTG--KD--PNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 436 ~~~i~~VvLvGG~s~~p~l~~~l~~~~g--~~--v~~~~~p~~aVA~GAal~ 483 (593)
...+|.|+|+||.++...+-++|.+... .+ +.-..+-.+|.|.|+..-
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lRV 345 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALRV 345 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHHH
Confidence 3579999999999999999999998874 22 333456678999998643
|
|
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.56 E-value=18 Score=36.94 Aligned_cols=42 Identities=17% Similarity=0.344 Sum_probs=27.3
Q ss_pred cCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEE
Q 047555 271 AGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVL 314 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~ 314 (593)
.|++ +.+.++..|+|++-... .+..++++.+.+|.| +-..++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 4775 67999999999876442 223467777778754 344444
|
|
| >COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] | Back alignment and domain information |
|---|
Probab=91.34 E-value=8.6 Score=38.09 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHH
Q 047555 407 RAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELV 458 (593)
Q Consensus 407 r~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l 458 (593)
++..+.+...++.....+|+..+++.+.....-..++++||.++ .+.+.+
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~--~~~~~~ 230 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK--LLLDEL 230 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH--hhhhhc
Confidence 45567777777777777777777765533223467999999864 444443
|
|
| >PRK13318 pantothenate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.04 E-value=11 Score=37.65 Aligned_cols=19 Identities=42% Similarity=0.800 Sum_probs=17.0
Q ss_pred EEEEEcCccceEEEEEECC
Q 047555 114 VVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g 132 (593)
+++||+|.|++++++++++
T Consensus 2 iL~IDIGnT~iK~al~d~g 20 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGG 20 (258)
T ss_pred EEEEEECCCcEEEEEEECC
Confidence 6899999999999998754
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=90.95 E-value=1.7 Score=44.80 Aligned_cols=70 Identities=27% Similarity=0.406 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC----CCCCCCCC----hhHHHhHHHHHhhh
Q 047555 415 SDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK----DPNVTVNP----DEVVALGAAVQGGV 486 (593)
Q Consensus 415 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~----~v~~~~~p----~~aVA~GAal~a~~ 486 (593)
+..++.+.+.|...+.. ..+++.|+|+|-.++++-+.+.+++.|+. ++. ...+ ....|.|||+.|.-
T Consensus 241 ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 241 EAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhh
Confidence 33444444444444333 24578899999999999998888887732 222 2222 13379999999987
Q ss_pred hcC
Q 047555 487 LAG 489 (593)
Q Consensus 487 l~~ 489 (593)
+.|
T Consensus 316 laG 318 (343)
T PF07318_consen 316 LAG 318 (343)
T ss_pred hhc
Confidence 766
|
The function of this family is unknown. |
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.82 E-value=3 Score=40.88 Aligned_cols=74 Identities=20% Similarity=0.313 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhCCCcCcEEEEeCCCCCHH-HHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCce
Q 047555 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDS-QRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGT 308 (593)
Q Consensus 230 L~~l~~~a~~~l~~~~~~~viTVPa~~~~~-~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT 308 (593)
.+.+++.++...+.++ .++++-..|... .....++.+. |+. .|.|- .......++.++||+|..|
T Consensus 76 Ve~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~vAA-aNW---------~Ata~--~~~e~~~dsci~VD~GSTT 141 (330)
T COG1548 76 VEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREVAA-ANW---------VATAR--FLAEEIKDSCILVDMGSTT 141 (330)
T ss_pred HHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHHHH-hhh---------HHHHH--HHHHhcCCceEEEecCCcc
Confidence 4556777777666654 688888877653 2222333211 111 01111 1112335778999999999
Q ss_pred EEEEEEEEc
Q 047555 309 FDVSVLEVG 317 (593)
Q Consensus 309 ~Dvsv~~~~ 317 (593)
+|+.-+..+
T Consensus 142 tDIIPi~~g 150 (330)
T COG1548 142 TDIIPIKDG 150 (330)
T ss_pred cceEeecch
Confidence 999877654
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.81 E-value=2.2 Score=46.56 Aligned_cols=93 Identities=18% Similarity=0.119 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCC---CHHHHHHHHHHHHHcCCceEEEechhHHHHHHhcc--ccCCCce
Q 047555 224 EISAQVLRKLVDDASKFLNDKITKAVVTVPAYF---NDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF--ERKNNET 298 (593)
Q Consensus 224 ~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~---~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~--~~~~~~~ 298 (593)
+.+...+..|+..++...+....++ ..|=... -...-+.+..+-+..|++.-.+--|-+|-..+.+. .......
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~ 130 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGD 130 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCC
Confidence 3444444444444444334444442 2222111 12345667777888899886666666665444433 2233678
Q ss_pred EEEEeeCCceEEEEEEEEc
Q 047555 299 ILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 299 vlVvD~GggT~Dvsv~~~~ 317 (593)
.+|+|+|||+|.+++....
T Consensus 131 ~lv~DIGGGStEl~~g~~~ 149 (492)
T COG0248 131 GLVIDIGGGSTELVLGDNF 149 (492)
T ss_pred EEEEEecCCeEEEEEecCC
Confidence 9999999999999988743
|
|
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
Probab=90.01 E-value=6 Score=41.63 Aligned_cols=82 Identities=21% Similarity=0.203 Sum_probs=54.6
Q ss_pred EEecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCe-EEEEeCCCChHhHHHHHHhHhCC-CCCCCC-CChhHHHh
Q 047555 403 TTLTRAKFEELCSDLLDRL-KKPVETALRDAKLSFNDLDE-VILVGGSTRIPAVQELVKKMTGK-DPNVTV-NPDEVVAL 478 (593)
Q Consensus 403 ~~itr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~~~~i~~-VvLvGG~s~~p~l~~~l~~~~g~-~v~~~~-~p~~aVA~ 478 (593)
..-.+.++...++..++++ ...++.++++.+ ++. ++|.||.+..-.+-..|.+..+. ++.+.+ --|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 3456777877777777665 466666777665 445 99999999888888888877543 344333 44778999
Q ss_pred HHHHHhhhhcC
Q 047555 479 GAAVQGGVLAG 489 (593)
Q Consensus 479 GAal~a~~l~~ 489 (593)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999886443
|
The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A. |
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=89.89 E-value=7.5 Score=47.52 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=47.2
Q ss_pred ecHHHHHHHHHHHH-HHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCC-CCCCCCChhHHHhHHHH
Q 047555 405 LTRAKFEELCSDLL-DRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD-PNVTVNPDEVVALGAAV 482 (593)
Q Consensus 405 itr~~~e~~~~~~~-~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~-v~~~~~p~~aVA~GAal 482 (593)
++-++..+-+..+. ..+.+.|+......+.+..+ -.++..||. =|...-.|.+.+|.+ +..+.+|....|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 44455544444433 34455666665555544322 224444444 488999999999987 77788999889999875
|
|
| >PRK00292 glk glucokinase; Provisional | Back alignment and domain information |
|---|
Probab=89.85 E-value=26 Score=36.02 Aligned_cols=47 Identities=32% Similarity=0.342 Sum_probs=30.8
Q ss_pred HHHHcCCceEEEechhHHHHHHhcc---------ccCC---CceEEEEeeCCceEEEEEE
Q 047555 267 AGRIAGLEVLRIINEPTAASLAYGF---------ERKN---NETILVFDLGGGTFDVSVL 314 (593)
Q Consensus 267 Aa~~AGl~~v~li~Ep~AAal~~~~---------~~~~---~~~vlVvD~GggT~Dvsv~ 314 (593)
..+..|++.+.+.|+-.|+|++-.. ...+ ...++++-+|-| +-.+++
T Consensus 86 l~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 86 MKQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HHHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 3344588778999999999998543 1111 367888888766 333333
|
|
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=89.08 E-value=2 Score=43.32 Aligned_cols=58 Identities=22% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCeEEEEeC--CCChH-hHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEe
Q 047555 439 LDEVILVGG--STRIP-AVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLD 498 (593)
Q Consensus 439 i~~VvLvGG--~s~~p-~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~ 498 (593)
...|+|.|- +.+.| .+++.|++.+..++..... +..|.|+|+.|.-+.+..++++-++
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~L~~--ksAA~G~AiIA~dI~gGk~~iLGi~ 323 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLVLDS--ESAAIGLALIAEDIFSGKREILGID 323 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEEecc--hhhhhhHHHHHHHHhCCcceEeeee
Confidence 347999997 88999 9999999999866553333 7889999999998877666665443
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >TIGR03723 bact_gcp putative glycoprotease GCP | Back alignment and domain information |
|---|
Probab=88.55 E-value=25 Score=36.28 Aligned_cols=56 Identities=20% Similarity=0.370 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhHHH
Q 047555 421 LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALGAA 481 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~GAa 481 (593)
+.+.++..++. ..++.|+|.||.++..++.+.|.+.+ +.++..+. --|.++++|++
T Consensus 247 l~~~~~~~~~~-----~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKK-----TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHH-----hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 33444444443 24678999999999999999999988 44444333 23667777765
|
This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas |
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=85.88 E-value=27 Score=36.14 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=25.8
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMT---GKDPNVT 469 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~ 469 (593)
.+..|+|+||-++..++++.+.+.+ +.++..+
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~ 275 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVV 275 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECC
Confidence 3678999999999999999999977 5444433
|
|
| >PRK00976 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.64 E-value=5.6 Score=40.85 Aligned_cols=59 Identities=27% Similarity=0.351 Sum_probs=43.9
Q ss_pred CCCeEEEEeCCCChH--hHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEe
Q 047555 438 DLDEVILVGGSTRIP--AVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLD 498 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p--~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~ 498 (593)
+++.|+|-||-++.+ .+.+.+++++... ...-..++-++|||+.|..+.+..++++-++
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G~~~ilgi~ 323 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNGKKDILGIE 323 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCCCceeeeeE
Confidence 478899999999987 7888998888543 2333447899999999987766556655443
|
|
| >PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P | Back alignment and domain information |
|---|
Probab=85.16 E-value=2.7 Score=44.14 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-CCC------CCCCChhHHHhHHHHHh
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-DPN------VTVNPDEVVALGAAVQG 484 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~v~------~~~~p~~aVA~GAal~a 484 (593)
+++.-+.+=+.+.|.+.+++.. .+++.|+++||+.+.+.|.+.|++.++. ++. ...+..||++ -|++|
T Consensus 261 D~~aTlt~~TA~sI~~~i~~~~---~~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~a--FA~La 335 (364)
T PF03702_consen 261 DILATLTEFTAQSIADAIRRFP---PQPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMA--FAWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----TT-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcC---CCCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHH--HHHHH
Confidence 3344444444455555555543 2277899999999999999999999964 332 2234445544 45555
Q ss_pred hh
Q 047555 485 GV 486 (593)
Q Consensus 485 ~~ 486 (593)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B. |
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=85.12 E-value=49 Score=36.86 Aligned_cols=51 Identities=29% Similarity=0.250 Sum_probs=36.8
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhHHHHHhhhhc
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~GAal~a~~l~ 488 (593)
.++.|+|+||-++..++++.|.+.+ +.++..+. --|.+++.|++.+.....
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3677999999999999999999665 44444443 346788888876544333
|
|
| >TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family | Back alignment and domain information |
|---|
Probab=84.87 E-value=31 Score=35.34 Aligned_cols=38 Identities=26% Similarity=0.500 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh
Q 047555 420 RLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT 462 (593)
Q Consensus 420 ~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~ 462 (593)
-+.+.+++.++.. .++.|+|+||-++...+++.|.+.+
T Consensus 245 ~l~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 245 HLIEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 3444445555442 4678999999999999999999887
|
This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. |
| >COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.61 E-value=54 Score=33.29 Aligned_cols=184 Identities=16% Similarity=0.152 Sum_probs=90.4
Q ss_pred eEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEE---ecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 275 VLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLS---TSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 275 ~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~---~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
.+.+.+....|......+ ++. +|+=.|-|+.-+.. .++...... ..-+...+|..|=+.+.+++...+..
T Consensus 99 ~v~v~~Dg~iAl~ga~~~---~~G-ii~i~GTGSi~~~~---~gg~~~r~GG~Gf~IgDegSga~ig~~~L~~~lra~DG 171 (301)
T COG2971 99 KVDVENDGLIALRGALGD---DDG-IIVIAGTGSIGYGR---KGGRRERVGGWGFPIGDEGSGAWIGREALQEALRAFDG 171 (301)
T ss_pred eEEEecChHHHHhhccCC---CCC-EEEEecCCeEEEEE---eCCeeEEecCcCccccccchHHHHHHHHHHHHHHHhcC
Confidence 777888877776655433 222 44446777766554 222221111 12234667888888888877766553
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHH------HHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE------ELCSDLLDRLKKPV 425 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e------~~~~~~~~~i~~~i 425 (593)
..... -.++.+...|..+....+. +.+...-..+.+ -.+...-|+ .+--.++++....|
T Consensus 172 ~~~~t------------~L~d~v~~~f~~d~edlv~--~~y~a~~~~~~i-a~lap~V~~~A~~GD~~A~~Il~~aa~~i 236 (301)
T COG2971 172 RREAT------------PLTDAVMAEFNLDPEDLVA--FIYKAGPGDKKI-AALAPAVFEAARKGDPVAIRILKEAAAYI 236 (301)
T ss_pred CccCC------------hHHHHHHHHhCCCHHHHHH--HHHhcCCchHHH-HHhhHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32111 0112222222221110000 000000000000 011111111 12224556666666
Q ss_pred HHHHHHcCCCCCCCCeEEEEeCCCCh-HhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 426 ETALRDAKLSFNDLDEVILVGGSTRI-PAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 426 ~~~l~~~~~~~~~i~~VvLvGG~s~~-p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
...++..... .....+.|.||..+. +++.+..++..-.++ ..-+..||.+.|...
T Consensus 237 ~~~~~~l~~~-~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~~ 292 (301)
T COG2971 237 ATLLEALSIF-NGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHhcc-cCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHHh
Confidence 6666665322 335679999999776 777777777763332 555688888887543
|
|
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.14 E-value=3.9 Score=43.73 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC-CCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLS-FNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
+.+++..++.+.=...++++..... ...+..+-+=||.++..++.+...+.+|.+|.++.+. |..|.|||+.|..-.|
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~~-EtTAlGaA~lAGla~G 452 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGIKLTRLRVDGGASRNNFLMQFQADILGVPVERPVVL-ETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEcCccccchhHHHHHHHHhCCeeeccccc-hhhHHHHHHHHhhhhC
Confidence 4445555555554444444432211 1257889999999999999999999999988866554 5789999999987655
|
|
| >PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=23 Score=40.46 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.5
Q ss_pred ccCCCeEEEEEcCccceEEEEEE
Q 047555 108 RVVNEKVVGIDLGTTNSAVAAME 130 (593)
Q Consensus 108 ~~~~~~vVGIDfGTt~s~va~~~ 130 (593)
....+.++|||+|.|++++++.+
T Consensus 14 ~~~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 14 QHADGPRLLADVGGTNARFALET 36 (638)
T ss_pred cCCCCCEEEEEcCchhheeeeec
Confidence 44567799999999999999874
|
|
| >PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.07 E-value=69 Score=33.43 Aligned_cols=113 Identities=13% Similarity=0.156 Sum_probs=57.9
Q ss_pred eHHHHHHHHHHHHHHHHHHHh---C---CCcCcEEEEe-CCCCCHHHHHHH---HHHHHHcCCceEEEechhHHHHHHhc
Q 047555 221 AAEEISAQVLRKLVDDASKFL---N---DKITKAVVTV-PAYFNDSQRTAT---KDAGRIAGLEVLRIINEPTAASLAYG 290 (593)
Q Consensus 221 ~~~~l~~~~L~~l~~~a~~~l---~---~~~~~~viTV-Pa~~~~~~r~~l---~~Aa~~AGl~~v~li~Ep~AAal~~~ 290 (593)
-|++......+.|....++.+ + ..++.+.+|. |..|.. -|--+ +..+...|++. .-++.-+|=+++..
T Consensus 41 vP~~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~-LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~~ 118 (345)
T PTZ00340 41 LPRETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAP-LSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMGR 118 (345)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhh-HHHHHHHHHHHHHHcCCCE-eecchHHHHHHHHh
Confidence 344444444444433333322 2 2345566665 443332 22222 33344455554 34455555444333
Q ss_pred cccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHH
Q 047555 291 FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 339 (593)
Q Consensus 291 ~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~ 339 (593)
+....... |++=+-||+|.+.. ...+.+++++...|...| +.||+
T Consensus 119 l~~~~~~P-l~LlVSGGhT~l~~--~~~~~~~ilG~T~Dda~G-ea~DK 163 (345)
T PTZ00340 119 LVTGAENP-VVLYVSGGNTQVIA--YSEHRYRIFGETIDIAVG-NCLDR 163 (345)
T ss_pred hccCCCCC-eEEEEeCCceEEEE--ecCCeEEEEEeecccchh-HHHHH
Confidence 32221122 66777888888776 445678999988876554 66664
|
|
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
Probab=81.63 E-value=5.6 Score=41.78 Aligned_cols=46 Identities=22% Similarity=0.195 Sum_probs=36.2
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhC----CCCCCCCCChhHHHhHHHHH
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTG----KDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g----~~v~~~~~p~~aVA~GAal~ 483 (593)
+++.|+|.||.+..+.+.+.|++.+. ..+....+-.+|.+.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 68999999999999999999988774 23344456668999998765
|
|
| >TIGR03722 arch_KAE1 universal archaeal protein Kae1 | Back alignment and domain information |
|---|
Probab=81.34 E-value=70 Score=33.02 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhH
Q 047555 439 LDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALG 479 (593)
Q Consensus 439 i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~G 479 (593)
++.|+|+||-++..++.+.|.+.+ +.++..+. --|.++++|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 677999999999999999999965 44444322 235566666
|
This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica. |
| >COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.59 E-value=97 Score=34.14 Aligned_cols=212 Identities=20% Similarity=0.184 Sum_probs=102.8
Q ss_pred cCCc-eEEEechhHH-HHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCC-ccHHHHHHHHHHHHHH
Q 047555 271 AGLE-VLRIINEPTA-ASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTH-LGGDDFDKRVVDWLAE 347 (593)
Q Consensus 271 AGl~-~v~li~Ep~A-Aal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~-lGG~~id~~l~~~l~~ 347 (593)
.+++ .+.++..-.| |+-+|....-++.-++++|-.|--...++....++.+..+....... +| .... .|.+++--
T Consensus 110 ~~~~~kv~~~eHH~aHAasAf~~SpF~~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG-~fY~-~~T~~lGf 187 (555)
T COG2192 110 KGLPVKVLFVEHHLAHAASAFFTSPFEEALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLG-LFYA-AFTELLGF 187 (555)
T ss_pred ccCccceeechHHHHHHHHHhcCCCcccceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHH-HHHH-HHHHHhCC
Confidence 4554 4556655555 33444443334578899998887676777766677777776654443 33 2222 33333221
Q ss_pred HhhhhhCC----CCcCCHHHHHHHHHHHHHHhhhcCCC-c------eeeE-EeccccccCCCCceeEEEecHHHHHHHHH
Q 047555 348 NFKRDEGV----VLLNDKQALQRLTEAAEKAKMELSSL-T------QANI-SLPFITATADGPKHIETTLTRAKFEELCS 415 (593)
Q Consensus 348 ~~~~~~~~----~~~~~~~~~~~L~~~~e~~K~~Ls~~-~------~~~i-~i~~~~~~~~~~~~~~~~itr~~~e~~~~ 415 (593)
+-....+. ..-.++.....+....++ |...... . ...+ .................+....++...++
T Consensus 188 ~~n~~EgKvMgLAaYG~p~y~~~~~d~l~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAasaQ 266 (555)
T COG2192 188 KPNSDEGKVMGLAAYGDPNYDLSLLDLLRE-KEDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAADIAASAQ 266 (555)
T ss_pred CCCCCCccEEEeeccCCcccchHHHHHHhh-ccccceeccHHHHHhccccceeccccccccccccccccccHHHHHHHHH
Confidence 11111110 001112111122222222 1100000 0 0000 00000000010011223444556666677
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHH-HHHHhHhCCCCCCCCC-ChhHHHhHHHHHhhhhcC
Q 047555 416 DLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQ-ELVKKMTGKDPNVTVN-PDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 416 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~-~~l~~~~g~~v~~~~~-p~~aVA~GAal~a~~l~~ 489 (593)
..++++...+-..+.+.. ....+.+.||.+..-..- +.+++.+..++.+.+. -|.-.|.|||+++....+
T Consensus 267 ~~lE~l~l~~~~~~~~~~----g~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~~~ 338 (555)
T COG2192 267 AYLEELVLEMLRYLREET----GEDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKRELG 338 (555)
T ss_pred HHHHHHHHHHHHHHHHHh----CccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHHHHHhc
Confidence 777776655555554432 146799999998765555 6677766666655443 456689999999876543
|
|
| >COG5026 Hexokinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.44 E-value=50 Score=35.19 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHcCC--ceEEEechhHHHHHHhc
Q 047555 258 DSQRTATKDAGRIAGL--EVLRIINEPTAASLAYG 290 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl--~~v~li~Ep~AAal~~~ 290 (593)
..-.+.+.++.+.-++ .++.+++..+++.++-.
T Consensus 181 ~dvv~~l~e~l~~r~~pi~v~aviNDttgtlla~~ 215 (466)
T COG5026 181 TDVVRLLQEALSARNLPIRVVAVINDTTGTLLASV 215 (466)
T ss_pred hhHHHHHHHHHHhcCCceEEEEEecccHHHHHHHh
Confidence 4556777888777776 67889999999888643
|
|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=80.15 E-value=74 Score=32.52 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=50.4
Q ss_pred eHHHHHHHHHHHHHHHHHHH--hCCCcCcEEEEeCCCCCHH------------HHHHHHHHH-HHcCCceEEEechhHHH
Q 047555 221 AAEEISAQVLRKLVDDASKF--LNDKITKAVVTVPAYFNDS------------QRTATKDAG-RIAGLEVLRIINEPTAA 285 (593)
Q Consensus 221 ~~~~l~~~~L~~l~~~a~~~--l~~~~~~~viTVPa~~~~~------------~r~~l~~Aa-~~AGl~~v~li~Ep~AA 285 (593)
++++++..+.+.+.+...+. ...++..+.|++|...+.. +...+.+.. +..|++ +.+.++..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 44554444444443333221 1123455778888644321 111233333 344765 6799999999
Q ss_pred HHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 286 SLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 286 al~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
|++-... ....++++++.+|.|- -.+++.
T Consensus 111 alaE~~~g~~~~~~~~~~v~igtGi-G~giv~ 141 (318)
T TIGR00744 111 ALGEYKKGAGKGARDVICITLGTGL-GGGIII 141 (318)
T ss_pred HHHHHHhcccCCCCcEEEEEeCCcc-EEEEEE
Confidence 8865432 2235778888888775 555543
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 593 | ||||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-162 | ||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 1e-160 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 1e-154 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-130 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 1e-129 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 1e-129 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 1e-115 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-96 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 4e-95 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 5e-95 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 6e-95 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 6e-95 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 6e-95 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 7e-95 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 8e-95 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-94 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 3e-94 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 4e-94 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 7e-94 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 8e-94 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 5e-93 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 7e-92 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 8e-92 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 8e-92 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 8e-92 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 9e-92 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 1e-91 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 2e-91 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 2e-91 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 2e-91 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 3e-91 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-91 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-91 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 3e-91 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 3e-91 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 3e-91 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 3e-91 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 4e-91 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-91 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-91 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 4e-91 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 5e-91 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 5e-91 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 8e-91 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-90 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 1e-90 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 2e-90 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 2e-90 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 3e-90 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 8e-90 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 3e-85 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 8e-47 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 8e-47 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 9e-47 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 2e-46 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 2e-45 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 1e-37 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 5e-37 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 8e-37 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 1e-36 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 1e-36 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-36 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 2e-36 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 3e-34 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 6e-34 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 2e-33 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 2e-31 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 5e-30 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 4e-29 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 8e-28 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 1e-09 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 8e-08 | ||
| 3h1q_A | 272 | Crystal Structure Of Ethanolamine Utilization Prote | 1e-04 |
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo State Length = 394 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
| >pdb|3H1Q|A Chain A, Crystal Structure Of Ethanolamine Utilization Protein Eutj From Carboxydothermus Hydrogenoformans Length = 272 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 593 | |||
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 3e-74 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 2e-67 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 3e-65 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 8e-64 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 5e-61 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 3e-58 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 6e-58 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 9e-58 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 5e-41 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 2e-32 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 8e-30 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 8e-17 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 1e-16 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 3e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-10 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 9e-06 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 2e-05 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 2e-04 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 7e-04 |
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 890 bits (2301), Expect = 0.0
Identities = 289/488 (59%), Positives = 381/488 (78%), Gaps = 9/488 (1%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT+ G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
+NT F++KR IGR+ EV + + ++++ +NG+ ++ G++ A +ISA+VL
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVE--VKGQKMAPPQISAEVL 120
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
+K+ A +L + +T+AV+TVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA+LAYG
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 291 FERKN-NETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345
++ N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++L
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTL 405
E FK+D+G+ L ND A+QRL EAAEKAK+ELSS Q +++LP+ITA A GPKH+ +
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 406 TRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD 465
TRAK E L DL++R +P++ AL+DA LS +D+D+VILVGG TR+P VQ+ V + GK+
Sbjct: 301 TRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 466 PNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPT 525
P VNPDE VA+GAAVQGGVL GDV D++LLDVTPLS+G+ET+GGVMT +I +NTT+PT
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPT 420
Query: 526 SKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 585
S+VFSTA D Q++V I+VLQGER+ DNKSLG F LDGI PAPRG+PQIEV FDIDA
Sbjct: 421 KHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDA 480
Query: 586 NGILSVTA 593
+GIL V+A
Sbjct: 481 DGILHVSA 488
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 858 bits (2219), Expect = 0.0
Identities = 298/481 (61%), Positives = 374/481 (77%), Gaps = 26/481 (5%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
K++GIDLGTTNS VA +EGG+ ++ N EG RTTPSVVA+ G+RLVG++AKRQA+ NP
Sbjct: 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKN-GERLVGEVAKRQAITNP 61
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
NT S+KR +G Y+V + GKQ+ +EISA +L+
Sbjct: 62 -NTIISIKRHMGTD------------YKVEIE------------GKQYTPQEISAIILQY 96
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
L A +L + +T+AV+TVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA+LAYG +
Sbjct: 97 LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
++ ++TILV+DLGGGTFDVS+LE+GDGVFEV +T+GD HLGGDDFD+ ++D+L FK++
Sbjct: 157 KEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQE 216
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
G+ L DK ALQRL +AAEKAK ELS +TQ ISLPFI+A +GP H+E TLTRAKFEE
Sbjct: 217 HGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEE 276
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
L + L++R PV AL+DA L+ D+D+VILVGGSTRIPAVQE +K+ GK+P+ VNP
Sbjct: 277 LSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNP 336
Query: 473 DEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFS 532
DEVVA+GAA+QGGV+AG+V D+VLLDVTPLS+G+ET+GGV TK+I RNTT+PTSKS+VF+
Sbjct: 337 DEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFT 396
Query: 533 TAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVT 592
TA D QT+V+I+VLQGER DNKSLG F+L GIPPAPRGVPQIEV FDIDANGI+ V
Sbjct: 397 TAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVR 456
Query: 593 A 593
A
Sbjct: 457 A 457
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 767 bits (1984), Expect = 0.0
Identities = 259/491 (52%), Positives = 332/491 (67%), Gaps = 15/491 (3%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
VGIDLGTT S V + GK I+ N +G RTTPS VA+T +RL+G AK Q +NP
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNP 63
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDE-NGNVKLDCPAIGKQFAAEEISAQV 229
NT F KR IGR+ V + K + VV D V+++ K F EE+S+ V
Sbjct: 64 TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMV 123
Query: 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
L K+ + A +L +T AVVTVPAYFNDSQR ATKDAG IAGL VLRIINEPTAA++AY
Sbjct: 124 LTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 183
Query: 290 GFERKNNE--TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347
G ++K +L+FDLGGGTFDVS+L + G+FEV ST+GDTHLGG+DFD R+V+
Sbjct: 184 GLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIA 243
Query: 348 NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTR 407
FKR + +K+A++RL A E+AK LSS TQA+I + + D T++TR
Sbjct: 244 EFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGID----FYTSITR 299
Query: 408 AKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM-TGKDP 466
A+FEEL +DL PVE ALRDAKL + + +++LVGGSTRIP +Q+L++ GK+
Sbjct: 300 ARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKEL 359
Query: 467 NVTVNPDEVVALGAAVQGGVLAGD----VSDIVLLDVTPLSIGLETLGGVMTKIIPRNTT 522
N ++NPDE VA GAAVQ +L+GD V D++LLDVTPLS+G+ET GGVMT +I RNTT
Sbjct: 360 NKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTT 419
Query: 523 LPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 582
+PT +++ F+T D Q V I V +GER +DN LG F L GIPPAPRGVPQIEV FD
Sbjct: 420 IPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFD 479
Query: 583 IDANGILSVTA 593
IDANGIL+V+A
Sbjct: 480 IDANGILNVSA 490
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 682 bits (1762), Expect = 0.0
Identities = 215/382 (56%), Positives = 291/382 (76%), Gaps = 9/382 (2%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT+ G+ LVGQ AKRQAV NP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
+NT F++KR IGR+ EV + + ++++ +NG+ ++ G++ A +ISA+VL
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVE--VKGQKMAPPQISAEVL 120
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
+K+ A +L + +T+AV+TVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA+LAYG
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 291 FERKN-NETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345
++ N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++L
Sbjct: 181 LDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTL 405
E FK+D+G+ L ND A+QRL EAAEKAK+ELSS Q +++LP+ITA A GPKH+ +
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 406 TRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKD 465
TRAK E L DL++R + ++ AL+DA LS +D+D+VILVGG TR+P VQ+ V + GK+
Sbjct: 301 TRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKE 360
Query: 466 PNVTVNPDEVVALGAAVQGGVL 487
P VNPDE VA+GAAVQGGVL
Sbjct: 361 PRKDVNPDEAVAIGAAVQGGVL 382
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 685 bits (1771), Expect = 0.0
Identities = 138/498 (27%), Positives = 239/498 (47%), Gaps = 27/498 (5%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
G+DLG NS +A IV N R+TPSVV + +R +G+ K + N
Sbjct: 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGP-KNRYLGETGKNKQTSNI 61
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQ 228
+NT ++KR IG + + ESK + ++V ++ + G F+A +++A
Sbjct: 62 KNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAM 121
Query: 229 VLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLA 288
+ K+ D + IT + VP ++ + QR DA RIAGL +RI+N+ TAA ++
Sbjct: 122 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 181
Query: 289 YGFERKNN-------ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRV 341
YG + + + D+G ++ S++ G +VL T+ D H GG DFD +
Sbjct: 182 YGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAI 241
Query: 342 VDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHI 401
+ A+ FK + + + +A R+ AAEK K LS+ T A PF + +
Sbjct: 242 TEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNA----PFSVESVMNDVDV 297
Query: 402 ETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM 461
+ L+R + EEL LL+R+ +PV AL AKLS ++D V ++GG+TRIP +++ + +
Sbjct: 298 SSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEA 357
Query: 462 TGKDPNVTVNPDEVVALGAAVQGGVLAGD--VSDIVLLDVTPLSIGLETLGGV----MTK 515
GK + T+N DE +A GAA + + V D+ P S+ V +
Sbjct: 358 FGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDEDHME 417
Query: 516 IIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGI--PPAPRG 573
+ P ++ P++K + GD + + + + ++ + G+ P
Sbjct: 418 VFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDS 475
Query: 574 VPQIEVKFDIDANGILSV 591
VP +++K D +G+ ++
Sbjct: 476 VP-VKLKLRCDPSGLHTI 492
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 555 bits (1432), Expect = 0.0
Identities = 197/386 (51%), Positives = 253/386 (65%), Gaps = 13/386 (3%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
+GIDLGTT S V + GK I+ N +G RTTPS VA+T +RL+G AK Q +NP
Sbjct: 24 PAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNP 82
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVV-RDENGNVKLDCPAIGKQFAAEEISAQV 229
NT F KR IGRK V + K +RVV V+++ K F EEIS+ V
Sbjct: 83 TNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMV 142
Query: 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
L K+ + A +L K+ AV+TVPAYFNDSQR ATKDAG I GL VLRIINEPTAA++AY
Sbjct: 143 LTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAY 202
Query: 290 GFERKNNE----TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWL 345
G ++K +L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V L
Sbjct: 203 GLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVSHL 262
Query: 346 AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTL 405
AE FKR + +K+A++RL A E+AK LSS TQA+I + + D T++
Sbjct: 263 AEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVD----FYTSI 318
Query: 406 TRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM-TGK 464
TRA+FEEL +DL +PVE ALRDAKL + E++LVGGSTRIP +Q+L++ GK
Sbjct: 319 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGK 378
Query: 465 DPNVTVNPDEVVALGAAVQGGVLAGD 490
+ N ++NPDE VA GAAVQ +L GD
Sbjct: 379 ELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 3e-74
Identities = 75/111 (67%), Positives = 84/111 (75%)
Query: 483 QGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVE 542
G L + +DVTPLS+G+ETLGGV TK+I RNTT+PT KS+VFSTA DGQT VE
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 543 INVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
I V QGERE DNK LG F L GIPPAPRGVPQIEV FDIDANGI+ V+A
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSA 119
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 214 bits (547), Expect = 2e-67
Identities = 68/116 (58%), Positives = 87/116 (75%)
Query: 478 LGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDG 537
+G++ ++DVTPLS+G+ET+GGVMT +I +NTT+PT S+VFSTA D
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 538 QTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
Q++V I+VLQGER+ DNKSLG F LDGI PAPRG+PQIEV FDIDA+GIL V+A
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSA 116
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 211 bits (540), Expect = 3e-65
Identities = 69/100 (69%), Positives = 85/100 (85%)
Query: 494 IVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFV 553
++LLDVTPLS+G+ET+GGVMT +I +NTT+PT S+VFSTA D Q++V I+VLQGER+
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 554 RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
DNKSLG F LDGI PAPRG+PQIEV FDIDA+GIL V+A
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSA 100
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 8e-64
Identities = 54/97 (55%), Positives = 75/97 (77%)
Query: 497 LDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDN 556
+DV PLS+GLET+GG++ K+IPRNTT+P ++++ F+T DGQT++ I+V+QGERE V+D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 557 KSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
+SL F L GIP P G I V F +DA+G+LSVTA
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTA 97
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 198 bits (505), Expect = 5e-61
Identities = 70/96 (72%), Positives = 81/96 (84%)
Query: 498 DVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNK 557
DVTPLS+G+ETLGG+MTK+I RNTT+PT KS+VFSTA DGQT V+I V QGERE NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 558 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
LG F L GIPPAPRGVPQ+EV FDIDANGI++V+A
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSA 99
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 190 bits (486), Expect = 3e-58
Identities = 62/96 (64%), Positives = 77/96 (80%)
Query: 498 DVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNK 557
DV PL++G+ET+GGVMTK+I RNT +PT KS+VFSTA D Q++V I + +GER V DN
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 558 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
LG+F + GIPPAPRGVPQIEV F+ID NGIL V+A
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSA 99
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 190 bits (484), Expect = 6e-58
Identities = 60/96 (62%), Positives = 72/96 (75%)
Query: 498 DVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNK 557
DV L++G+ET GGVMT +I RNT +PT KS++FSTA D Q +V I V +GER +DN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 558 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
LG F L GIPPAPRGVPQIEV F +DANGIL V+A
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSA 99
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 189 bits (483), Expect = 9e-58
Identities = 60/96 (62%), Positives = 71/96 (73%)
Query: 498 DVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNK 557
DV PLS+G+ET GGVMT +I RNT +PT + F+T D Q V I V +GER RDN
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 558 SLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
LG+F L GIPPAPRGVPQIEV F+IDANGIL+V+A
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSA 99
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 148 bits (377), Expect = 5e-41
Identities = 62/372 (16%), Positives = 110/372 (29%), Gaps = 107/372 (28%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDR--LVGQIAKRQAVVNP 172
+ L N + P V LV + V
Sbjct: 6 LEQKLNLLNDLIVREIV----NPLP------PPYKVGVDLGTADIVLVVTDQEGIPV--A 53
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
VV+D G V + Q++R+
Sbjct: 54 GAL---------------------KWASVVKD--GLV-----------VDYIGAIQIVRE 79
Query: 233 LVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE 292
L + L ++ +A +P A AGLE++ +++EP AA+ A G
Sbjct: 80 LKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN 139
Query: 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRD 352
+V D+GGGT ++V+E G + D GG + F
Sbjct: 140 DG-----IVVDIGGGTTGIAVIEKGKITA-----TFDEPTGGTHLSLVLAGSYKIPF--- 186
Query: 353 EGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEE 412
E AE K + S +
Sbjct: 187 ----------------EEAETIKKDFSR--------------------------HREIMR 204
Query: 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNP 472
+ +++++ V+ +++ ++ V +VGG+ + E + GK+ V ++P
Sbjct: 205 VVRPVIEKMALIVKEVIKN----YDQTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHP 260
Query: 473 DEVVALGAAVQG 484
V LG A+ G
Sbjct: 261 LLVTPLGIALFG 272
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 126 bits (317), Expect = 2e-32
Identities = 54/373 (14%), Positives = 113/373 (30%), Gaps = 59/373 (15%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPEN 174
V ID G+TN + E + S ++ + G +N E
Sbjct: 3 VFIDDGSTNIKLQWQESDGTI--------KQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 175 TFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV 234
F + + + V+ V + E+ L
Sbjct: 55 YSFDPISPDAVVTTNIAWQYSDVNVVAVHHA---------LLTSGLPVSEVDIVCTLPL- 104
Query: 235 DDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERK 294
+++ + + + ++ T + G ++ ++++ E A E
Sbjct: 105 ---TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELD 161
Query: 295 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEG 354
+++L+ DLGG T D+S + + + GD+ LG V D L+ +
Sbjct: 162 ELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-- 217
Query: 355 VVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELC 414
+ A + + ++ I + E
Sbjct: 218 ----SSYLADDIIIHRKDNNYLKQ---------------------RINDENKISIVTEAM 252
Query: 415 SDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN---VTVN 471
++ L +L++ V L + V+++GG + + + VKK T T N
Sbjct: 253 NEALRKLEQRVLNTLNEFS----GYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNN 306
Query: 472 PDEVVALGAAVQG 484
+ G + G
Sbjct: 307 SQYDLVNGMYLIG 319
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 119 bits (299), Expect = 8e-30
Identities = 57/390 (14%), Positives = 115/390 (29%), Gaps = 92/390 (23%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
VVG+D+G ++ GK I PS A T+ +G +
Sbjct: 22 VVVGLDVGYGDT-KVIGVDGKRIIF---------PSRWAVTETESWGIGGKIPVLSTDGG 71
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRK 232
+ F K G + + + A++E +
Sbjct: 72 QTKFIYGKYASGNNIRVPQGDGR------------------------LASKEAFPLIAAA 107
Query: 233 LVDDASKFLNDKITKAVVT-VPAYFNDSQRTATKDA------------GRIAGLEVLRII 279
L + + + + P D + A K+A G + + R+I
Sbjct: 108 LWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLI 167
Query: 280 NEPTAAS-----LAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 334
P L G + +V D+G T DV + + D V+ S +G
Sbjct: 168 MRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGV 226
Query: 335 DDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITAT 394
D L+ ++ G V+ D L + A +
Sbjct: 227 GDAI----SALSRKIAKETGFVVPFD------LAQEALSHPVMFR--------------- 261
Query: 395 ADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAV 454
+ ++ E+L + +++ ++ + + + + +I VGG + + +
Sbjct: 262 --QKQVGGPEVSGPILEDLANRIIENIRLNLRGEV-------DRVTSLIPVGGGSNL--I 310
Query: 455 QELVKKMTGKDPNVTVNPDEVVALGAAVQG 484
+ +++ P V A G
Sbjct: 311 GDRFEEI---APGTLVKIKPEDLQFANALG 337
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 8e-17
Identities = 53/384 (13%), Positives = 107/384 (27%), Gaps = 87/384 (22%)
Query: 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVV 170
NE V+ +D G + + T + + + + I +
Sbjct: 6 NEYVMTLDAGKYETKLIGKNKKGTTEDIK---RVIFKTKIYNL---EDGYIDIEGNSHKI 59
Query: 171 NPENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
+ + IG + E E+ + + + AI + + +
Sbjct: 60 ELDGKEY----LIGEQGVEDSSETSKTNLI-------HKLAAYTAITQVLDSNK------ 102
Query: 231 RKLVDDASKFLNDKITKAVVTVPA--YFNDSQRTATKDA------------GRIAGLEVL 276
+ + V+ P N + +D + E+
Sbjct: 103 ------------NNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEIT 150
Query: 277 RIINEPTAASLAYGF-ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 335
I + + + + E N+ + V D GG S+ S G
Sbjct: 151 DITIKAEGSGVLFLEQENFKNKNVAVIDFGGLNMGFSLY---RNCVVNPSERFIEEHGVK 207
Query: 336 DFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATA 395
D RV D L + L+ ++QA L K E+ + + I
Sbjct: 208 DLIIRVGDALTDLN----NGNLITNEQAESALNNGYMKKGGEIDTESSTVI--------- 254
Query: 396 DGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQ 455
+ E+ D + + + LD +I +GG+T+ ++
Sbjct: 255 -----------KKVKEKFLKDAIK--------LIEKRGFKLDQLDSLIFIGGTTQK--LK 293
Query: 456 ELVKKMTGKDPNVTVNPDEVVALG 479
E + K + +T N G
Sbjct: 294 EQISKTYPNNSIITNNSQWTTCEG 317
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 80.9 bits (199), Expect = 1e-16
Identities = 51/390 (13%), Positives = 109/390 (27%), Gaps = 84/390 (21%)
Query: 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY-TKIGDRLVGQIAKRQAV 169
N V+ +D G N V + ++ PS + T ++L G + + V
Sbjct: 3 NVYVMALDFG--NGFVKGKINDEKFVI---------PSRIGRKTNENNQLKGFVDNKLDV 51
Query: 170 VNPENTFFSVKR-FIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQ 228
+ + G + + + K + R + + K +
Sbjct: 52 SEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDIKSFKD-------------LVEC 98
Query: 229 VLRKLVDDASKFLNDKITKAVVTVP--AYFNDSQRTATK-----------DAGRIAGLEV 275
+ L + + +P D Q K + ++
Sbjct: 99 SIGLLAREVPE--EVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKG 156
Query: 276 LRIINEPTAASLAYGFERKN------NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 329
++I+ +P L E V D G GT + + V S
Sbjct: 157 VKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTY---QNMKRVEEESFV 213
Query: 330 THLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLP 389
+ G DF KR+ A + + + + + + E + +L+ T +
Sbjct: 214 INKGTIDFYKRI----ASHVSKKSEGASITP----RMIEKGLEYKQCKLNQKTVIDF--- 262
Query: 390 FITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGST 449
+ +F + L++ + E + + N +D +I+ GG
Sbjct: 263 -----------------KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGA 301
Query: 450 RIPAVQELVKKMTGKDPNVTVNPDEVVALG 479
I + + + G
Sbjct: 302 NI--HFDSLSHYYSDVFEKADDSQFSNVRG 329
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 58/390 (14%), Positives = 115/390 (29%), Gaps = 70/390 (17%)
Query: 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPS-------VVAYTKIGDRLVGQI 163
+ +G+++G + + + G P + A R TP V + + +
Sbjct: 12 RVEALGLEIGASALKLVEVSGNPPAL--KALASRPTPPGLLMEGMVAEPAALAQEI--KE 67
Query: 164 AKRQAVVNPENTFFSVK-RFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAA 222
+A ++ + + +V + VR E I
Sbjct: 68 LLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAER------YIPFPIDE 121
Query: 223 EEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEP 282
+ L L + +++ V A + AGL + + +P
Sbjct: 122 VVLDFAPLTPLSEVQEG---EQVQVMVAAARQEAVAGVLEALRG----AGLVPVVLDVKP 174
Query: 283 TAASLAYGF--ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 340
A + + LV D+G + + +L + L G DF +
Sbjct: 175 FAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPLA-----VRVLTLSGKDFTEA 229
Query: 341 VVDWL------AENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITAT 394
+ AE KR G+ L + L AE+ + + A
Sbjct: 230 IARSFNLDLLAAEEVKRTYGMATLPTEDEELLLDFDAERERYSPGRIYDA---------- 279
Query: 395 ADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDL--DEVILVGGSTRIP 452
R EL + + +L ++ + + L+GG +++
Sbjct: 280 -----------IRPVLVELTQE--------LRRSLEFFRIQLEEASPEVGYLLGGGSKLR 320
Query: 453 AVQELVKKMTGKDPNVTVNPDEVVALGAAV 482
+ L+ G + VNP E VA+
Sbjct: 321 GLASLLTDTLGVNLEP-VNPWEAVAVDPKR 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 63.3 bits (153), Expect = 2e-10
Identities = 63/411 (15%), Positives = 127/411 (30%), Gaps = 118/411 (28%)
Query: 89 LKLNNEKNNTRR--------RC-----NVGPVRVVNEKVVGIDLGTTNSAVAAMEGGKPT 135
L++++ + RR C NV + N A
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN----------------AFNLSCKI 268
Query: 136 IVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTF--------FSVKRFIGRKM 187
++T T V D L ++ + T +++ +
Sbjct: 269 LLT------TRFKQVT-----DFLSAATTTHISLDHHSMTLTPDEVKSLLL--KYLDCRP 315
Query: 188 SEVDDESKQVSYRVV-------RDENG---NVK-LDCPAIGKQFAA--EEISAQVLRKLV 234
++ E + R + RD N K ++C + + + RK+
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375
Query: 235 DDASKFLND-KITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFER 293
D S F I ++++ + D ++ +V+ ++N+ SL E+
Sbjct: 376 DRLSVFPPSAHIPTILLSL--IWFDVIKS-----------DVMVVVNKLHKYSLV---EK 419
Query: 294 KNNE-TILVFDLGGGTFDVSVLEVGDGVFE---VLSTSGDTHLGGDDFDKRVVD--WL-- 345
+ E TI + + ++ V + V + DD +D +
Sbjct: 420 QPKESTISIPSI---YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 346 -------AENFKRDEGV--VLLND---KQALQRLTEAAEKAKMELSSLTQANISLPFITA 393
E+ +R V L+ +Q ++ + A + L++L Q P+I
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC- 535
Query: 394 TADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVIL 444
K+E L + +LD L K E + + DL + L
Sbjct: 536 ----DND-------PKYERLVNAILDFLPKIEENLICS---KYTDLLRIAL 572
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Length = 344 | Back alignment and structure |
|---|
Score = 47.1 bits (113), Expect = 9e-06
Identities = 65/244 (26%), Positives = 101/244 (41%), Gaps = 62/244 (25%)
Query: 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRL--VGQIAKRQAVVNP 172
+GIDLGT N+ V G IV N E PSV+A + VG AK
Sbjct: 6 IGIDLGTANTLVFLRGKG---IVVN-E-----PSVIAIDSTTGEILKVGLEAK------- 49
Query: 173 ENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR- 231
IG+ + + + R +RD G V D + ++ +LR
Sbjct: 50 --------NMIGKTPATI------KAIRPMRD--G-VIAD-------Y---TVALVMLRY 82
Query: 232 --KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
++ V+ VP D +R A DAG AG + +I EP AA++
Sbjct: 83 FINKAKGGMNLFKPRV---VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGS 139
Query: 290 G---FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLA 346
E N +V D+GGGT +V+V+ +G + V S + GD+ D+ +V ++
Sbjct: 140 NLNVEEPSGN---MVVDIGGGTTEVAVISLG-SI--VTWES--IRIAGDEMDEAIVQYVR 191
Query: 347 ENFK 350
E ++
Sbjct: 192 ETYR 195
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 31/180 (17%), Positives = 57/180 (31%), Gaps = 46/180 (25%)
Query: 340 RVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPF--------- 390
R++D D L + A +K + + +P+
Sbjct: 335 RILDAGRAALGVD-----------YDELAKLAFASKPGANGI----TLVPYFDGERTPNR 379
Query: 391 ---------ITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDE 441
+T ++ L RA E L D L+ +R +
Sbjct: 380 PNATATFSGMTLANTTREN----LARAFVEGLLCSQRDCLE-----LIRSLGA---SITR 427
Query: 442 VILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTP 501
++L+GG + A++ L + G DE VA+GAA Q + ++ +T
Sbjct: 428 ILLIGGGAKSEAIRTLAPSILGM-DVTRPATDEYVAIGAARQAAWVLSGETEPPAWQLTI 486
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 | Back alignment and structure |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 42/400 (10%), Positives = 104/400 (26%), Gaps = 96/400 (24%)
Query: 111 NEKVVGIDLGTTN--SAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQA 168
ID+G+ V + + + S G
Sbjct: 7 TVFYTSIDIGSRYIKGLVLGKRDQEWEAL----AFSSVKSR-----------G--LDEGE 49
Query: 169 VVNPENTFFSVKRFIGR--KMSEVDDESKQV---SYRVVRDENGNVKLDCPAIGKQFAAE 223
+ + SV + + + S V S E+ ++ D +
Sbjct: 50 IKDAIAFKESVNTLLKELEEQLQKSLRSDFVISFSSVSFEREDTVIERDFGEEKR----- 104
Query: 224 EISAQVLRKLVDDASKFLNDKITKAVVTVPAYFN-DSQR--------------------T 262
I+ +L ++ +A + L + + + D +R
Sbjct: 105 SITLDILSEMQSEALEKLKENGKTPLHIFSKRYLLDDERIVFNPLDMKASKIAIEYTSIV 164
Query: 263 ATKDAGR-------IAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLE 315
++ + + + + + ++V +LG + +
Sbjct: 165 VPLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYK 224
Query: 316 VGDGVF-EVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLND-KQALQRLTEAAEK 373
G + + +G ++ D L E +E+
Sbjct: 225 NGVPIKISYVP------VGMKH--------------------VIKDVSAVLDTSFEESER 258
Query: 374 AKMELSSLTQANIS---LPFITATADGPKHI-ETTLT---RAKFEELCSDLLDRLKKPVE 426
+ + ++ + + + K L+ A+ E+ S + E
Sbjct: 259 LIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFR---E 315
Query: 427 TALRDAKLSFNDLDE-VILVGGSTRIPAVQELVKKMTGKD 465
+ + + V+L GG +IP + EL ++
Sbjct: 316 VEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSP 355
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 7e-04
Identities = 31/169 (18%), Positives = 56/169 (33%), Gaps = 36/169 (21%)
Query: 340 RVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFIT------- 392
+DW A+ + L AA++A + LP+++
Sbjct: 296 SCLDWAAKLTGLSN----------VPALIAAAQQADESAEPV----WFLPYLSGERTPHN 341
Query: 393 -ATADG------PKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILV 445
A G +H L RA E + L D + + + V L+
Sbjct: 342 NPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMD-----VVHACGI---KPQSVTLI 393
Query: 446 GGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDI 494
GG R ++++ ++G+ + D ALGAA + A +
Sbjct: 394 GGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSL 442
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 593 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.95 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.95 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.95 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.94 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.94 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.93 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.88 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.87 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.82 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.82 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.82 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.81 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.8 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.8 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.78 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.78 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.77 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.76 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.73 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.72 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.67 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 99.64 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.38 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.36 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 99.17 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.83 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 97.44 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 97.23 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 96.92 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 96.86 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 96.79 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 96.58 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 96.36 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 96.35 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 96.31 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 96.27 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 96.21 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 96.17 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 96.16 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 96.1 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 96.01 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 95.91 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 95.89 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 95.84 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 95.77 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 95.75 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 95.73 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 95.66 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 95.61 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 95.6 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 95.58 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 95.54 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 95.53 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 95.51 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 95.46 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 95.45 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 95.28 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 95.24 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 95.02 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 94.98 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 94.84 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 94.53 | |
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 94.2 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 94.03 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 93.84 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 93.67 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 93.18 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 93.17 | |
| 1sz2_A | 332 | Glucokinase, glucose kinase; ATP-dependent, glucos | 92.84 | |
| 3ven_A | 576 | O-carbamoyltransferase TOBZ; antibiotic biosynthes | 91.7 | |
| 3zyy_X | 631 | Iron-sulfur cluster binding protein; iron-sulfur-b | 91.62 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 90.8 | |
| 3cet_A | 334 | Conserved archaeal protein; Q6M145, MRR63, NESG, X | 90.12 | |
| 3hi0_A | 508 | Putative exopolyphosphatase; 17739545, structural | 84.02 | |
| 3o8m_A | 485 | Hexokinase; rnaseh-like fold, glycolysis, glucose | 82.51 | |
| 4g9i_A | 772 | Hydrogenase maturation protein HYPF; zinc finger, | 80.43 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-85 Score=726.68 Aligned_cols=481 Identities=60% Similarity=0.968 Sum_probs=460.1
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS-- 188 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~-- 188 (593)
|+.+||||||||||+||++.+|.++++.|+.|++++||+|+|.+++++++|..|+.+...+|.++++++|+++|+.++
T Consensus 1 M~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 80 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSH
T ss_pred CCcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCH
Confidence 467999999999999999999999999999999999999999988899999999999999999999999999999987
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAG 268 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa 268 (593)
.++.+.+.+||.++...++.+.+.+. ++.++++++.+++|++|++.++.+++..+.++|||||++|++.||+++++|+
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~~~~~--~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa 158 (605)
T 4b9q_A 81 EVQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAG 158 (605)
T ss_dssp HHHHHHTTCSSEEEECTTSBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 57888899999999999998888775 7899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceEEEechhHHHHHHhccccC-CCceEEEEeeCCceEEEEEEEEcC----CEEEEEEecCCCCccHHHHHHHHHH
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERK-NNETILVFDLGGGTFDVSVLEVGD----GVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~-~~~~vlVvD~GggT~Dvsv~~~~~----~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
+.||++++++++||+|||++|+.... .+..++|||+||||+|++++++.+ +.++++++.++..+||.+||++|++
T Consensus 159 ~~AGl~v~~li~EP~AAAlaygl~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~ 238 (605)
T 4b9q_A 159 RIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLIN 238 (605)
T ss_dssp HHTTCEEEEEEEHHHHHHHHHHTTSCCSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHcCCceEEEeCcHHHHHHHhhhhccCCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHH
Confidence 99999999999999999999987764 478999999999999999999987 8999999999999999999999999
Q ss_pred HHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 047555 344 WLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKK 423 (593)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~ 423 (593)
|+.++|+++.+.++..+++.+.+|+++||++|+.|+......+.++.+..+..++.++.+.|+|++|+++++|+++++.+
T Consensus 239 ~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~ 318 (605)
T 4b9q_A 239 YLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIE 318 (605)
T ss_dssp HHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777666667889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEeccccc
Q 047555 424 PVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLS 503 (593)
Q Consensus 424 ~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s 503 (593)
+++++|+++++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++..+++++.|++|++
T Consensus 319 ~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~~~~~l~dv~p~s 398 (605)
T 4b9q_A 319 PLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLS 398 (605)
T ss_dssp HHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSSCSEEEECBCSSC
T ss_pred HHHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCCCceEEEeeeeeE
Confidence 99999999999989999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred ceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEE
Q 047555 504 IGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDI 583 (593)
Q Consensus 504 ~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~ 583 (593)
||+++.++.|.+||++|+++|++++++|++..|+|+.+.|.|||||+.+..+|+.||+|.|+|+|++|+|.++|+|+|++
T Consensus 399 lgie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~i 478 (605)
T 4b9q_A 399 LGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDI 478 (605)
T ss_dssp EEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEE
T ss_pred EEEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEc
Q 047555 584 DANGILSVTA 593 (593)
Q Consensus 584 d~~g~l~v~a 593 (593)
|.||+|+|+|
T Consensus 479 d~~gil~v~a 488 (605)
T 4b9q_A 479 DADGILHVSA 488 (605)
T ss_dssp CTTSCEEEEE
T ss_pred cCCcEEEEEE
Confidence 9999999986
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-83 Score=712.16 Aligned_cols=480 Identities=60% Similarity=0.977 Sum_probs=452.3
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--h
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--E 189 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~ 189 (593)
+.+||||||||||+||++.+|.++++.|+.|.+++||+|+|.++++++||+.|+.+...+|+++++++|+++|+.++ +
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~ 81 (605)
T 2kho_A 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp --CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred CCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcHH
Confidence 46899999999999999999999999999999999999999878899999999999999999999999999999876 4
Q ss_pred hhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q 047555 190 VDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGR 269 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~ 269 (593)
++.+.+.+||.++.+.+|.+.+.+. ++.++++++.+++|++|++.++.+++..+.++|||||++|++.||+++++|++
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~i~~~--g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~ 159 (605)
T 2kho_A 82 VQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 159 (605)
T ss_dssp HHHHHHHCSSCEEECTTSBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEECCCCceEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHH
Confidence 6667778999999888998888874 67899999999999999999999999989999999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhccccC-CCceEEEEeeCCceEEEEEEEEc----CCEEEEEEecCCCCccHHHHHHHHHHH
Q 047555 270 IAGLEVLRIINEPTAASLAYGFERK-NNETILVFDLGGGTFDVSVLEVG----DGVFEVLSTSGDTHLGGDDFDKRVVDW 344 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~~~-~~~~vlVvD~GggT~Dvsv~~~~----~~~~~vl~~~~~~~lGG~~id~~l~~~ 344 (593)
.||++++++++||+|||++|+.+.. .+..+||||+||||+|++++++. ++.++++++.++..+||.+||+.|++|
T Consensus 160 ~AGl~v~~li~EP~AAAlay~l~~~~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~ 239 (605)
T 2kho_A 160 IAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239 (605)
T ss_dssp TTTCEEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHH
T ss_pred HcCCceEEEecCHHHHHHHhhhcccCCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHH
Confidence 9999999999999999999998765 57899999999999999999998 789999999999999999999999999
Q ss_pred HHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 047555 345 LAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKP 424 (593)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 424 (593)
+.++|+++++.++..+++.+.+|+++||++|+.|+......+.++.+..+.+++.++.+.|+|++|+++++|+++++.++
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~ 319 (605)
T 2kho_A 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEP 319 (605)
T ss_dssp HHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999999999999999999998888888876655444456788999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccc
Q 047555 425 VETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSI 504 (593)
Q Consensus 425 i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~ 504 (593)
++++|+++++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++..+++++.|++|++|
T Consensus 320 i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~~~~~l~dv~p~sl 399 (605)
T 2kho_A 320 LKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSL 399 (605)
T ss_dssp HHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSCCCCCCSBCCCCCE
T ss_pred HHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCccCceEEeeeeeec
Confidence 99999999998889999999999999999999999999998989999999999999999999998888999999999999
Q ss_pred eEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEEC
Q 047555 505 GLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDID 584 (593)
Q Consensus 505 gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d 584 (593)
|+++.++.|.+||++|+++|+++++.|++..|+|+.+.|.||||++.+..+|+.||+|.|+|+|+.|+|.++|+|+|++|
T Consensus 400 gi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 479 (605)
T 2kho_A 400 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479 (605)
T ss_dssp EEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEEC
T ss_pred cccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEc
Q 047555 585 ANGILSVTA 593 (593)
Q Consensus 585 ~~g~l~v~a 593 (593)
.||+|+|+|
T Consensus 480 ~~gil~v~a 488 (605)
T 2kho_A 480 ADGILHVSA 488 (605)
T ss_dssp TTSCEEEEE
T ss_pred CCCceeEEE
Confidence 999999986
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-81 Score=688.42 Aligned_cols=478 Identities=54% Similarity=0.844 Sum_probs=443.7
Q ss_pred CCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc-
Q 047555 110 VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS- 188 (593)
Q Consensus 110 ~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~- 188 (593)
.|+.+||||||||||+||++.+|.++++.|+.|++++||+|+|.++ +++||++|+.+...+|+++++++|+++|++++
T Consensus 2 ~m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d 80 (554)
T 1yuw_A 2 SKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDD 80 (554)
T ss_dssp CSCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS-CEEETHHHHTTTTTCGGGEECCGGGTTTCCSSC
T ss_pred CCCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC-cEEEcHHHHHhhhhChhhehHhhHHhcCCCCCc
Confidence 3567999999999999999999999999999999999999999865 79999999999999999999999999999876
Q ss_pred -hhhhhhccCceEEEECCCCcEEEEeCC--CCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 047555 189 -EVDDESKQVSYRVVRDENGNVKLDCPA--IGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATK 265 (593)
Q Consensus 189 -~~~~~~~~~~~~v~~~~~g~~~i~~~~--~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~ 265 (593)
.++.+.+.|||.++. .+|...+.+.. ..+.++|+++++++|++|++.++.+++..+.++|||||++|++.||++++
T Consensus 81 ~~v~~~~~~~p~~v~~-~~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~ 159 (554)
T 1yuw_A 81 AVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATK 159 (554)
T ss_dssp SHHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHhhcCCeEEEe-cCCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 567778899999884 46776665543 34679999999999999999999999998999999999999999999999
Q ss_pred HHHHHcCCceEEEechhHHHHHHhccccC--CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHH
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFERK--NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVD 343 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~~--~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 343 (593)
+|++.||++++.+++||+|||++|+.+.. .+..+||||+||||+|++++++.++.+++++..++..+||.+||+.|++
T Consensus 160 ~A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~ 239 (554)
T 1yuw_A 160 DAGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVN 239 (554)
T ss_dssp HHHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEEcCCcEEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999999999988754 4689999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHH
Q 047555 344 WLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKK 423 (593)
Q Consensus 344 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~ 423 (593)
++.++|+++++.++..+++.+.+|+++||++|+.|+......+.++.+..+ .++...|+|++|+++++++++++.+
T Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g----~~~~~~ltr~~~e~l~~~~~~~i~~ 315 (554)
T 1yuw_A 240 HFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLD 315 (554)
T ss_dssp HHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSS----CCEEEEEEHHHHHHHTHHHHHHTTH
T ss_pred HHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCC----ceEEEEEEHHHHHHHHHHHHHHHHH
Confidence 999999999988888899999999999999999999988888888754332 3578999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhC-CCCCCCCCChhHHHhHHHHHhhhhcCC----CCceEEEe
Q 047555 424 PVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTG-KDPNVTVNPDEVVALGAAVQGGVLAGD----VSDIVLLD 498 (593)
Q Consensus 424 ~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g-~~v~~~~~p~~aVA~GAal~a~~l~~~----~~~~~~~~ 498 (593)
.++++|+++++...+|+.|+||||++++|+|++.|++.|+ .++....||++|||+|||++|+.+++. .+++++.|
T Consensus 316 ~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~d 395 (554)
T 1yuw_A 316 PVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLD 395 (554)
T ss_dssp HHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCC
T ss_pred HHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceEEEE
Confidence 9999999999888899999999999999999999999995 788889999999999999999998874 57889999
Q ss_pred cccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEE
Q 047555 499 VTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIE 578 (593)
Q Consensus 499 ~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~ 578 (593)
++|++||+++.++.|.+||++|++||+++++.|++..|+|+.+.|.||||++.+..+|+.||+|.|+|+|++|+|.++|+
T Consensus 396 v~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~ 475 (554)
T 1yuw_A 396 VTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIE 475 (554)
T ss_dssp BCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCEE
T ss_pred eeeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCcccccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCceEEEEc
Q 047555 579 VKFDIDANGILSVTA 593 (593)
Q Consensus 579 v~f~~d~~g~l~v~a 593 (593)
|+|++|.||+|+|+|
T Consensus 476 v~f~id~~gil~v~a 490 (554)
T 1yuw_A 476 VTFDIDANGILNVSA 490 (554)
T ss_dssp EEEEECTTCCEEEEE
T ss_pred EEEEEccCceEEEEE
Confidence 999999999999986
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-79 Score=684.40 Aligned_cols=474 Identities=28% Similarity=0.471 Sum_probs=435.4
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--h
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--E 189 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~ 189 (593)
+.+||||||||||+||++.+|.++++.|+.|++.+||+|+|.++ +++||+.|+.+...+|.++++++|+++|+.++ .
T Consensus 2 m~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 80 (675)
T 3d2f_A 2 STPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD 80 (675)
T ss_dssp CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS-SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred CcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC-cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcHH
Confidence 45899999999999999999999999999999999999999864 79999999999999999999999999999886 5
Q ss_pred hhhhhccCceEEEECCCCcEEEEeCCCC--eeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 047555 190 VDDESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDA 267 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~A 267 (593)
++.+.+.+||.++...+|.+.+.+...+ +.++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++|
T Consensus 81 v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 160 (675)
T 3d2f_A 81 FEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADA 160 (675)
T ss_dssp HHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 6778889999999888898887665434 57999999999999999999999998899999999999999999999999
Q ss_pred HHHcCCceEEEechhHHHHHHhcccc-------CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHH
Q 047555 268 GRIAGLEVLRIINEPTAASLAYGFER-------KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKR 340 (593)
Q Consensus 268 a~~AGl~~v~li~Ep~AAal~~~~~~-------~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~ 340 (593)
++.||++++++++||+|||++|+... ..+..+||||+||||+|++++++.++.++++++.++..+||.+||+.
T Consensus 161 a~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~ 240 (675)
T 3d2f_A 161 ARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLA 240 (675)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHH
T ss_pred HHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEecCCeEEEEEEcCCCCccHHHHHHH
Confidence 99999999999999999999998754 34688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHH
Q 047555 341 VVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDR 420 (593)
Q Consensus 341 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~ 420 (593)
|++|+.++|+++++.++..+++++.+|+.+||++|+.|+......++++.+..+ .++.+.|+|++|++++++++++
T Consensus 241 l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g----~~~~~~itr~~fe~l~~~l~~~ 316 (675)
T 3d2f_A 241 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMND----VDVSSQLSREELEELVKPLLER 316 (675)
T ss_dssp HHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSS----CCEEEEEEHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccC----ceEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999998888999999999999999999999888888887754332 3578999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC--CCceEEEe
Q 047555 421 LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD--VSDIVLLD 498 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~--~~~~~~~~ 498 (593)
+.++++++|+++++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++. ++++.+.|
T Consensus 317 i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~~~l~D 396 (675)
T 3d2f_A 317 VTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFED 396 (675)
T ss_dssp TTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCCCCEEEE
T ss_pred HHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCcccceEEEe
Confidence 9999999999999988899999999999999999999999999888889999999999999999999884 67899999
Q ss_pred cccccceEEeeCC----EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCccccc-CCceeeEEEEeCCCCCCCC
Q 047555 499 VTPLSIGLETLGG----VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVR-DNKSLGSFRLDGIPPAPRG 573 (593)
Q Consensus 499 ~~~~s~gi~~~~~----~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~-~~~~lg~~~l~~i~~~~~g 573 (593)
++|++||+++.++ .+.+||++|+++|++++++|++..+++ +.+. |+|++.++. +|..||+|.|+|+|+.|+|
T Consensus 397 v~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~--~~~~-~~ge~~~~~~~n~~lg~f~l~gi~~~~~g 473 (675)
T 3d2f_A 397 IHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS--MAAS-YTDITQLPPNTPEQIANWEITGVQLPEGQ 473 (675)
T ss_dssp EECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE--EEEE-ESCGGGSCTTCCSEEEEEEEECCCCCSSC
T ss_pred eeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce--EEEE-EcCCcccccccCceeeEEEecCcCCCCCC
Confidence 9999999999876 499999999999999999999876543 3332 779988887 9999999999999999999
Q ss_pred cC-eEEEEEEECCCceEEEEc
Q 047555 574 VP-QIEVKFDIDANGILSVTA 593 (593)
Q Consensus 574 ~~-~i~v~f~~d~~g~l~v~a 593 (593)
.+ +|+|+|++|.||+|+|+|
T Consensus 474 ~~~~i~v~f~id~~Gil~V~a 494 (675)
T 3d2f_A 474 DSVPVKLKLRCDPSGLHTIEE 494 (675)
T ss_dssp SCEEEEEEEEECTTSCEEEEE
T ss_pred CcceEEEEEEEcCCCcEEEEE
Confidence 74 999999999999999986
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-78 Score=658.11 Aligned_cols=456 Identities=65% Similarity=1.026 Sum_probs=427.3
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
+.+||||||||||+||++.+|.++++.|+.|.+++||+|+| .+++++||++|+.+...+| ++++++|+++|+++.
T Consensus 2 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~--- 76 (509)
T 2v7y_A 2 SKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK--- 76 (509)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC---
T ss_pred CCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE---
Confidence 46999999999999999999999999999999999999999 5678999999999988999 999999999998531
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIA 271 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~A 271 (593)
+.+ .+..++++++.+++|++|++.++.+++..+.++|||||++|++.||+++++|++.|
T Consensus 77 -------------------~~~--~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~A 135 (509)
T 2v7y_A 77 -------------------VEI--EGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIA 135 (509)
T ss_dssp -------------------EEE--TTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred -------------------EEE--CCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHc
Confidence 111 25678999999999999999999999988899999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhh
Q 047555 272 GLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~ 351 (593)
|++++.+++||+|||++|+.+.+.+..+||||+||||+|++++++.++.+++++..++..+||.+||+.|++++.++|++
T Consensus 136 Gl~~~~li~Ep~AAAlay~~~~~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~~l~~~~~~ 215 (509)
T 2v7y_A 136 GLEVERIINEPTAAALAYGLDKEEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQ 215 (509)
T ss_dssp TCEEEEEEEHHHHHHHHTTGGGSCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEecCHHHHHHHHhhccCCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEecCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998877788999999999999999999998999999999999999999999999999999999
Q ss_pred hhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047555 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRD 431 (593)
Q Consensus 352 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~ 431 (593)
+++.++..++..+.+|+++||++|+.|+......+.++.+..+.+|+.++.+.|+|++|+++++|+++++.++++++|++
T Consensus 216 ~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~i~~~L~~ 295 (509)
T 2v7y_A 216 EHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGPVRQALQD 295 (509)
T ss_dssp HHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHHHHHHHHH
T ss_pred HhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999888888888765544444567789999999999999999999999999999
Q ss_pred cCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCceEEEecccccceEEeeCC
Q 047555 432 AKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSDIVLLDVTPLSIGLETLGG 511 (593)
Q Consensus 432 ~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~~~~~~~~~~s~gi~~~~~ 511 (593)
+++...+|+.|+|+||+|++|+|+++|++.|+.++....||++|||+|||++|+.+++..+++++.|++|++||+++.++
T Consensus 296 a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~~~~~~~dv~p~slgi~~~~~ 375 (509)
T 2v7y_A 296 AGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGG 375 (509)
T ss_dssp HTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCCCCCCCCCBCSSEEEEEETTT
T ss_pred cCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCccCceEEEeeccccceeecCC
Confidence 99888889999999999999999999999999888899999999999999999999988888999999999999999999
Q ss_pred EEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCeEEEEEEECCCceEEE
Q 047555 512 VMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSV 591 (593)
Q Consensus 512 ~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~~d~~g~l~v 591 (593)
.|.+||++|+++|+++++.|++..|+|+.+.|.||||++.+..+|+.||+|.|+++|+.|+|.++|+|+|++|.||+|+|
T Consensus 376 ~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~v 455 (509)
T 2v7y_A 376 VFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHV 455 (509)
T ss_dssp EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEECTTSCEEE
T ss_pred ceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEcCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Ec
Q 047555 592 TA 593 (593)
Q Consensus 592 ~a 593 (593)
+|
T Consensus 456 ~a 457 (509)
T 2v7y_A 456 RA 457 (509)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-60 Score=505.64 Aligned_cols=374 Identities=53% Similarity=0.816 Sum_probs=343.8
Q ss_pred CCCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc-
Q 047555 110 VNEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS- 188 (593)
Q Consensus 110 ~~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~- 188 (593)
..+.+||||||||||+||++.+|.++++.++.|++++||+|+|.++ ++++|.+|+.+...+|.++++++|+++|+.++
T Consensus 21 ~~~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~ 99 (404)
T 3i33_A 21 QSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFED 99 (404)
T ss_dssp --CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHHTTTTCSTTEECCGGGTTTCCTTS
T ss_pred ccCCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-CEEecHHHHHhhHhChhhhHHHHHHHhCCCCCc
Confidence 3567999999999999999999999999999999999999999866 89999999999999999999999999999987
Q ss_pred -hhhhhhccCceEEEECCCCcEEEEeCCCC--eeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 047555 189 -EVDDESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATK 265 (593)
Q Consensus 189 -~~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~ 265 (593)
.++.+.+.|||.+.. .++...+.+...+ ..++++++++++|++|++.++.+++..+.++|||||++|++.||++|+
T Consensus 100 ~~~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~ 178 (404)
T 3i33_A 100 ATVQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATK 178 (404)
T ss_dssp HHHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHH
T ss_pred HHHHHHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEECCCCCHHHHHHHH
Confidence 466778899999886 5666666554444 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEechhHHHHHHhccccC----CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHH
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFERK----NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRV 341 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~~----~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l 341 (593)
+|++.||++.+.+++||+|||++|+.... .+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|
T Consensus 179 ~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l 258 (404)
T 3i33_A 179 DAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRM 258 (404)
T ss_dssp HHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHH
T ss_pred HHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEEeCCeEEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999999988765 67899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHH
Q 047555 342 VDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRL 421 (593)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i 421 (593)
.+++.++++.+++.++..+++.+.+|+++||++|+.|+......+.++.... ..++.+.|+|++|+++++++++++
T Consensus 259 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~----g~~~~~~i~r~~~~~~~~~~~~~i 334 (404)
T 3i33_A 259 VSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYE----GVDFYTSITRARFEELNADLFRGT 334 (404)
T ss_dssp HHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEET----TEEEEEEEEHHHHHHHTHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccC----CceeEEEEcHHHHHHHHHHHHHHH
Confidence 9999999999999888899999999999999999999999888887775433 245789999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh-CCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 422 KKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT-GKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 422 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~-g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.+.|+++|+++++...+|+.|+|+||+|++|+|++.|++.| +.++....||++|||+|||++|+.+++
T Consensus 335 ~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 335 LEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 99999999999988889999999999999999999999999 788888999999999999999999875
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-60 Score=499.47 Aligned_cols=375 Identities=57% Similarity=0.935 Sum_probs=341.6
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--h
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--E 189 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~ 189 (593)
+.+||||||||||+||++.+|.++++.|++|.+++||+|+|+++++++||++|+.+...+|+++++++|++||+.++ +
T Consensus 2 ~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 81 (383)
T 1dkg_D 2 GKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (383)
T ss_dssp -CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred CcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcHH
Confidence 46899999999999999999999999999999999999999877889999999999999999999999999999875 4
Q ss_pred hhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHH
Q 047555 190 VDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGR 269 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~ 269 (593)
++.+.+.+||.++.+.++...+.++ ++.++++++++++|+++++.++.+++..+.++|+|||++|++.||+++++|++
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~~--g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~ 159 (383)
T 1dkg_D 82 VQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGR 159 (383)
T ss_dssp HHHHTTTCSSEEEECSSSBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCeEEEEcCCCcEEEEEC--CEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 6666778999998888888888774 67899999999999999999999998888899999999999999999999999
Q ss_pred HcCCceEEEechhHHHHHHhccccC-CCceEEEEeeCCceEEEEEEEEc----CCEEEEEEecCCCCccHHHHHHHHHHH
Q 047555 270 IAGLEVLRIINEPTAASLAYGFERK-NNETILVFDLGGGTFDVSVLEVG----DGVFEVLSTSGDTHLGGDDFDKRVVDW 344 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~~~-~~~~vlVvD~GggT~Dvsv~~~~----~~~~~vl~~~~~~~lGG~~id~~l~~~ 344 (593)
.||++.+.+++||+|||++|+.+.. .+..++|||+||||+|+++++.+ ++.+++++..++..+||.+||+.|.++
T Consensus 160 ~aGl~~~~li~Ep~Aaa~~~~~~~~~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 239 (383)
T 1dkg_D 160 IAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239 (383)
T ss_dssp HTTCEESCCCBHHHHHHHHHTCCC-CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHH
T ss_pred HcCCceEEEeccHHHHHHHHHhccCCCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999987754 57899999999999999999998 567888888888999999999999999
Q ss_pred HHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHH
Q 047555 345 LAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKP 424 (593)
Q Consensus 345 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~ 424 (593)
+.++++.+++.++..++..+.+|++.||++|+.|+......+.++.+....+|+.++.+.|+|++|+++++|+++++.+.
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~ 319 (383)
T 1dkg_D 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEL 319 (383)
T ss_dssp HHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 99999988888888889999999999999999999988888887765543334345678999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhc
Q 047555 425 VETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 425 i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~ 488 (593)
++++|+++++...+++.|+|+||+|++|+|+++|++.|+.++....||+++||+||+++|+.++
T Consensus 320 i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 320 LKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 9999999998878899999999999999999999999998888899999999999999998763
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=494.37 Aligned_cols=372 Identities=31% Similarity=0.498 Sum_probs=334.0
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
+.+||||||||||+||++.++.++++.++.|.+++||+|+|.+ +.+++|.+|..+...+|+++++++|+++|+.+++..
T Consensus 13 ~~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~ 91 (409)
T 4gni_A 13 RVVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVD-GDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVD 91 (409)
T ss_dssp CCEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEET-TEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCC
T ss_pred CcEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECC-CcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchh
Confidence 5899999999999999999999999999999999999999984 589999999999999999999999999999987544
Q ss_pred hhhccCceEEEECCCCcEEEEeCC------CCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHH
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPA------IGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATK 265 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~------~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~ 265 (593)
.....+++.+. ..+|.+.+.+.. .+..++++++++++|++|+++++.+++..+.++|||||++|++.||++|+
T Consensus 92 ~~~~~~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~ 170 (409)
T 4gni_A 92 PTHNHASAHPQ-EAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAALI 170 (409)
T ss_dssp CGGGTTSCCCE-EETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHH
T ss_pred hhhhcccccee-cCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHH
Confidence 33334444443 356777776654 34679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceEEEechhHHHHHHhcccc---CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHH
Q 047555 266 DAGRIAGLEVLRIINEPTAASLAYGFER---KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVV 342 (593)
Q Consensus 266 ~Aa~~AGl~~v~li~Ep~AAal~~~~~~---~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 342 (593)
+|++.||++++.+++||+|||++|+... ..+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|.
T Consensus 171 ~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~i~ 250 (409)
T 4gni_A 171 AAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALDKVLI 250 (409)
T ss_dssp HHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHHHHHH
T ss_pred HHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEEeCCeEEEEEecCCCCcCHHHHHHHHH
Confidence 9999999999999999999999999874 5688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhC--CCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHH
Q 047555 343 DWLAENFKRDEG--VVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDR 420 (593)
Q Consensus 343 ~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~ 420 (593)
+++.++|..+++ .+...+++.+.+|+.+||++|+.|+......+.++.+.. ..++.+.|+|++|++++++++++
T Consensus 251 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~ 326 (409)
T 4gni_A 251 DHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLID----GLDFASTINRLRYETIARTVFEG 326 (409)
T ss_dssp HHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEET----TEEEEEEEEHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccC----CcceEEEeeHHHHHHHHHHHHHH
Confidence 999999998887 777889999999999999999999998888888875543 24578999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCC--------CCCCCChhHHHhHHHHHhhhhcC
Q 047555 421 LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDP--------NVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v--------~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
+.++|+++|+++++...+|+.|+|+||+|++|+|++.|++.|+.++ ....||++|||+|||++|+....
T Consensus 327 i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~ 403 (409)
T 4gni_A 327 FNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQE 403 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhhhh
Confidence 9999999999999888889999999999999999999999998653 57899999999999999987653
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-41 Score=353.08 Aligned_cols=312 Identities=27% Similarity=0.378 Sum_probs=238.5
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC-CcE-EecHHHHHhhhhCCCchhhhhhhhhCCCCch
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI-GDR-LVGQIAKRQAVVNPENTFFSVKRFIGRKMSE 189 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~-~~~-~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~ 189 (593)
+.+|||||||+||++++..++ .++ + +||+|+|+++ ++. ++|++|+.....+|.+...
T Consensus 3 ~~~igIDlGT~~s~v~~~~~~--~~~-~------~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------ 61 (344)
T 1jce_A 3 RKDIGIDLGTANTLVFLRGKG--IVV-N------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA------------ 61 (344)
T ss_dssp -CEEEEEECSSEEEEEETTTE--EEE-E------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE------------
T ss_pred CceEEEEcCcCcEEEEECCCC--EEE-e------eCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEE------------
Confidence 468999999999999875433 333 2 7999999876 554 7999997765555554321
Q ss_pred hhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHH--HhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 047555 190 VDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASK--FLNDKITKAVVTVPAYFNDSQRTATKDA 267 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~--~l~~~~~~~viTVPa~~~~~~r~~l~~A 267 (593)
.+|++ +| .+...+....+++++++.+.. .++ ..++|||||++|++.||+++++|
T Consensus 62 ------~~p~~-----~g-----------~i~~~~~~~~i~~~~l~~~~~~~~~~--~~~~vitvP~~~~~~~r~~~~~a 117 (344)
T 1jce_A 62 ------IRPMR-----DG-----------VIADYTVALVMLRYFINKAKGGMNLF--KPRVVIGVPIGITDVERRAILDA 117 (344)
T ss_dssp ------ECCEE-----TT-----------EESSHHHHHHHHHHHHHHHHTSCCSC--CCEEEEEECTTCCHHHHHHHHHH
T ss_pred ------EecCC-----CC-----------eeCChHHHHHHHHHHHHHHhhccccC--CCeEEEEECCCCCHHHHHHHHHH
Confidence 01111 11 122334445555555544433 123 36899999999999999999999
Q ss_pred HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHH
Q 047555 268 GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE 347 (593)
Q Consensus 268 a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~ 347 (593)
++.||++.+.+++||+|||++|+.+...+..++|||+||||||+++++.+... ..++..+||.+||+.|.+++.+
T Consensus 118 ~~~aG~~~~~li~ep~Aaa~~~~~~~~~~~~~lVvDiGggttdvsv~~~~~~~-----~~~~~~lGG~~id~~l~~~l~~ 192 (344)
T 1jce_A 118 GLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVVDIGGGTTEVAVISLGSIV-----TWESIRIAGDEMDEAIVQYVRE 192 (344)
T ss_dssp HHHTTCSEEEEEEHHHHHHHHTTCCTTSSSCEEEEEECSSCEEEEEEETTEEE-----EEEEESCSHHHHHHHHHHHHHH
T ss_pred HHHcCCCeEeccCCHHHHHHhcCCCCCCCceEEEEEeCCCeEEEEEEEcCCEE-----eeCCCCccChhHHHHHHHHHHH
Confidence 99999999999999999999999877778899999999999999999976422 2456789999999999999988
Q ss_pred HhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce------eeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHH
Q 047555 348 NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ------ANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRL 421 (593)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i 421 (593)
+++.... .+.||++|+.++.... ..+.++.. +..+..+..+.|+|++|+++++|.++++
T Consensus 193 ~~~~~~~-------------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~i~~~~~~~~~~~~~~~i 257 (344)
T 1jce_A 193 TYRVAIG-------------ERTAERVKIEIGNVFPSKENDELETTVSGI--DLSTGLPRKLTLKGGEVREALRSVVVAI 257 (344)
T ss_dssp HHCEECC-------------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEE--ETTTTEEEEEEEEHHHHHHHTHHHHHHH
T ss_pred HhCcccC-------------HHHHHHHHHHHhccCccccCCcceEEEecc--ccCCCCceeEEEeHHHHHHHHHHHHHHH
Confidence 7643221 5689999999986532 23444321 1112234678999999999999999999
Q ss_pred HHHHHHHHHHcCCC--CCCC-CeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhc
Q 047555 422 KKPVETALRDAKLS--FNDL-DEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 422 ~~~i~~~l~~~~~~--~~~i-~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~ 488 (593)
.+.|+++|++++.. ...+ +.|+|+||+|++|+|+++|++.|+.++....||+++||+||++++..++
T Consensus 258 ~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 258 VESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 99999999987532 1223 6899999999999999999999998888889999999999999988654
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=250.70 Aligned_cols=299 Identities=15% Similarity=0.157 Sum_probs=204.9
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC---------CcEEecHHHHHhhhhCCCchhhhhhhh
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI---------GDRLVGQIAKRQAVVNPENTFFSVKRF 182 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~K~~ 182 (593)
...|+||+||++++++++.++.|.++ +||+++...+ ...++|++|.... .
T Consensus 5 ~~~ivID~Gs~~~k~G~~~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~--------- 63 (375)
T 2fxu_A 5 TTALVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----G--------- 63 (375)
T ss_dssp CCCEEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHT----T---------
T ss_pred CceEEEECCCCeEEEEECCCCCCcee--------eccccccccccccccCCCCCCeEechhHhhcC----c---------
Confidence 36789999999999999877766644 4777776543 2457888875431 0
Q ss_pred hCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCC--cCcEEEEeCCCCCHHH
Q 047555 183 IGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDK--ITKAVVTVPAYFNDSQ 260 (593)
Q Consensus 183 lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~--~~~~viTVPa~~~~~~ 260 (593)
...+..+.....+...+.+..+|++++. +.++.. ...+++|+|+.++..+
T Consensus 64 -------------------------~~~~~~Pi~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~ 115 (375)
T 2fxu_A 64 -------------------------ILTLKYPIEHGIITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKAN 115 (375)
T ss_dssp -------------------------SEEEECSEETTEECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHH
T ss_pred -------------------------ccceeccccCCcccCHHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHH
Confidence 0111112223344556677777777763 233322 2459999999999999
Q ss_pred HHHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHH
Q 047555 261 RTATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDK 339 (593)
Q Consensus 261 r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~ 339 (593)
|+++.++ ++.+|++.+.+++||.||+++++. ...+|||+|+||||++.+.. +. .+........+||++||+
T Consensus 116 r~~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~-----~~~lVvDiG~gtt~v~~v~~--G~-~~~~~~~~~~~GG~~lt~ 187 (375)
T 2fxu_A 116 REKMTQIMFETFNVPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVTHNVPIYE--GY-ALPHAIMRLDLAGRDLTD 187 (375)
T ss_dssp HHHHHHHHHHTTCCSEEEEEEHHHHHHHHTTC-----SSEEEEEECSSCEEEEEEET--TE-ECGGGCEEESCCHHHHHH
T ss_pred HHHHHHHHHHhcCcceEEEccchheeeeecCC-----CeEEEEEcCCCceEEeEeEC--CE-EeccceEEeccCHHHHHH
Confidence 9988876 588899999999999999999985 36799999999999987753 32 222223457899999999
Q ss_pred HHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCC----------------CceeeEEeccccccCCCCceeEE
Q 047555 340 RVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSS----------------LTQANISLPFITATADGPKHIET 403 (593)
Q Consensus 340 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~----------------~~~~~i~i~~~~~~~~~~~~~~~ 403 (593)
.|.++|..+. ..+... .-.+.+|++|+.++. .....+.+| + ...+
T Consensus 188 ~l~~~l~~~~-----~~~~~~-----~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lp------d---g~~i 248 (375)
T 2fxu_A 188 YLMKILTERG-----YSFVTT-----AEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELP------D---GQVI 248 (375)
T ss_dssp HHHHHHHHHT-----CCCCSH-----HHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT------T---SCEE
T ss_pred HHHHHHHhcC-----CCCCcH-----HHHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECC------C---CCEE
Confidence 9999998751 111100 012345555555432 122233333 1 2357
Q ss_pred EecHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CC
Q 047555 404 TLTRAKF---EELCSDL-----LDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KD 465 (593)
Q Consensus 404 ~itr~~~---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~ 465 (593)
.+++++| |.+|+|. ...+.++|.+.+.++... ...++.|+|+||+|++|+++++|++.++ .+
T Consensus 249 ~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~~~v~ 328 (375)
T 2fxu_A 249 TIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIK 328 (375)
T ss_dssp EESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCC
T ss_pred EEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCCeeEE
Confidence 8888877 4455553 355778888888765321 2234779999999999999999999885 33
Q ss_pred CCCCCCChhHHHhHHHHHhhh
Q 047555 466 PNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 466 v~~~~~p~~aVA~GAal~a~~ 486 (593)
+....+|.+++++||+++|..
T Consensus 329 v~~~~~p~~~~w~G~si~a~l 349 (375)
T 2fxu_A 329 IIAPPERKYSVWIGGSILASL 349 (375)
T ss_dssp EECCTTTTSHHHHHHHHHHHC
T ss_pred EEcCCCCCccEEcchHHhhCc
Confidence 445679999999999999874
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-26 Score=229.30 Aligned_cols=205 Identities=24% Similarity=0.369 Sum_probs=175.3
Q ss_pred eHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEE
Q 047555 221 AAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETIL 300 (593)
Q Consensus 221 ~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vl 300 (593)
...+....+|+++++.+....+.....+++|+|+.|...+|+.++++++.+|++...++.||+|++++++.. ..+
T Consensus 68 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~-----~~~ 142 (272)
T 3h1q_A 68 VDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN-----DGI 142 (272)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCS-----SEE
T ss_pred EcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCC-----CEE
Confidence 345677888999998888887877888999999999999999999999999999999999999999998764 359
Q ss_pred EEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCC
Q 047555 301 VFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSS 380 (593)
Q Consensus 301 VvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~ 380 (593)
|+|+||||+|++++..+ ... ......+||.+||+.+.+++.-. .+.+|++|+.++
T Consensus 143 viDiGggst~~~~~~~g--~~~---~~~~~~~Gg~~~~~~l~~~l~~~-------------------~~~ae~~k~~~~- 197 (272)
T 3h1q_A 143 VVDIGGGTTGIAVIEKG--KIT---ATFDEPTGGTHLSLVLAGSYKIP-------------------FEEAETIKKDFS- 197 (272)
T ss_dssp EEEECSSCEEEEEEETT--EEE---EECCBSCCHHHHHHHHHHHHTCC-------------------HHHHHHHHHSST-
T ss_pred EEEECCCcEEEEEEECC--EEE---EEecCCCcHHHHHHHHHHHhCCC-------------------HHHHHHHHHhcC-
Confidence 99999999999998743 221 34678999999999998876411 467889998865
Q ss_pred CceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHh
Q 047555 381 LTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKK 460 (593)
Q Consensus 381 ~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~ 460 (593)
+++++++++.+.++++.+.+.+.++..+ +++.|+|+||++++|++++.|++
T Consensus 198 -------------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l~~~l~~ 248 (272)
T 3h1q_A 198 -------------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGFSEEFSR 248 (272)
T ss_dssp -------------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTHHHHHHH
T ss_pred -------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhHHHHHHH
Confidence 4788999999999999999999988754 37789999999999999999999
Q ss_pred HhCCCCCCCCCChhHHHhHHHHHh
Q 047555 461 MTGKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 461 ~~g~~v~~~~~p~~aVA~GAal~a 484 (593)
.|+.++..+.+|++++|+|||++|
T Consensus 249 ~l~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 249 FLGKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred HhCCCccccCChHHHHHHHHHhcC
Confidence 999999999999999999999874
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-27 Score=250.25 Aligned_cols=308 Identities=16% Similarity=0.174 Sum_probs=208.2
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC-----------------cEEecHHHHHhhhhCCC
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG-----------------DRLVGQIAKRQAVVNPE 173 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~-----------------~~~~G~~A~~~~~~~~~ 173 (593)
....|+||+||++++++++.++.|.++ +||+|+...+. ..++|++|... +
T Consensus 4 ~~~~ivID~Gs~~~k~G~~~~~~p~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~- 70 (418)
T 1k8k_A 4 RLPACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----P- 70 (418)
T ss_dssp CSCCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-----------CCCTTGGGCEEEGGGGTSC----T-
T ss_pred CCCeEEEECCCCeEEEeeCCCCCCCCc--------CCceEEEECcccccccccccccccccccCeEEChHHHhc----C-
Confidence 346789999999999999876666544 58888875431 14455554221 0
Q ss_pred chhhhhhhhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCC--cCcEEEE
Q 047555 174 NTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDK--ITKAVVT 251 (593)
Q Consensus 174 ~~i~~~K~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~--~~~~viT 251 (593)
...+..+.....+...+.+..+|++++. +.++.. ...+++|
T Consensus 71 ----------------------------------~~~~~~pi~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit 113 (418)
T 1k8k_A 71 ----------------------------------TYATKWPIRHGIVEDWDLMERFMEQVIF---KYLRAEPEDHYFLLT 113 (418)
T ss_dssp ----------------------------------TSEEECCEETTEESCHHHHHHHHHHHHH---TTTCCCGGGCCEEEE
T ss_pred ----------------------------------CCEEeccccCCEECCHHHHHHHHHHHHH---hccCCCCCCCcEEEE
Confidence 0111222223334455666667776654 233322 3469999
Q ss_pred eCCCCCHHHHHHHHHHH-HHcCCceEEEechhHHHHHH-hc---cccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEe
Q 047555 252 VPAYFNDSQRTATKDAG-RIAGLEVLRIINEPTAASLA-YG---FERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLST 326 (593)
Q Consensus 252 VPa~~~~~~r~~l~~Aa-~~AGl~~v~li~Ep~AAal~-~~---~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~ 326 (593)
+|+.|+..+|++|.+++ +.+|++.+.+++||.||+++ |. ...... ..+|||+|+||||++++.. +. .+...
T Consensus 114 ~p~~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~-~glVvDiG~gtt~v~~v~~--G~-~~~~~ 189 (418)
T 1k8k_A 114 EPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTL-TGTVIDSGDGVTHVIPVAE--GY-VIGSC 189 (418)
T ss_dssp ECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCC-CEEEEEESSSCEEEEEEET--TE-ECGGG
T ss_pred eCCCCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCC-eEEEEEcCCCceEEEEeEC--CE-Ecccc
Confidence 99999999999999998 88999999999999999988 32 111222 6799999999999999873 32 22222
Q ss_pred cCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCce-----------------eeEEec
Q 047555 327 SGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQ-----------------ANISLP 389 (593)
Q Consensus 327 ~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------------~~i~i~ 389 (593)
.....+||++||+.|.++|.+++. ...... -.+.+|++|+.++.... ..+.++
T Consensus 190 ~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~-------~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lp 259 (418)
T 1k8k_A 190 IKHIPIAGRDITYFIQQLLRDREV---GIPPEQ-------SLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGI 259 (418)
T ss_dssp CEEESCSHHHHHHHHHHHHHTTCC---CCCGGG-------HHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEE
T ss_pred eEEEeCcHHHHHHHHHHHHHhcCC---CCCCHH-------HHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECC
Confidence 355789999999999999986542 111111 13567778877764311 223333
Q ss_pred cccccCCCCceeEEEecHHHH---HHHHHHHH------HHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHH
Q 047555 390 FITATADGPKHIETTLTRAKF---EELCSDLL------DRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELV 458 (593)
Q Consensus 390 ~~~~~~~~~~~~~~~itr~~~---e~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l 458 (593)
+........+.+++++| |.+|+|.+ ..+.+.|.+.|.++... ...++.|+|+||+|++|+++++|
T Consensus 260 ----d~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl 335 (418)
T 1k8k_A 260 ----NAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRL 335 (418)
T ss_dssp ----CTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHH
T ss_pred ----CCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHH
Confidence 11122345788999998 55666542 56888999999886533 33457899999999999999999
Q ss_pred HhHhCC------------------------CCCCCCCChhHHHhHHHHHhhh
Q 047555 459 KKMTGK------------------------DPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 459 ~~~~g~------------------------~v~~~~~p~~aVA~GAal~a~~ 486 (593)
++.++. ++..+.+|..++++||+++|..
T Consensus 336 ~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 336 QRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 876531 1223457889999999999874
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-28 Score=249.68 Aligned_cols=226 Identities=17% Similarity=0.133 Sum_probs=164.2
Q ss_pred eeHHHHHHHHHHHHHHHHHHHhCCCcCcEE--EEeCCCCCHHHHHHHHHHHHHc--------C------CceEEEechhH
Q 047555 220 FAAEEISAQVLRKLVDDASKFLNDKITKAV--VTVPAYFNDSQRTATKDAGRIA--------G------LEVLRIINEPT 283 (593)
Q Consensus 220 ~~~~~l~~~~L~~l~~~a~~~l~~~~~~~v--iTVPa~~~~~~r~~l~~Aa~~A--------G------l~~v~li~Ep~ 283 (593)
+..++...+++..|...+....... .++| ++||+++++.||+++++++..+ | ++.+.+++||.
T Consensus 95 ~~~~~~~~ll~~~l~~~~~~~~~~~-~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li~Ep~ 173 (346)
T 2fsj_A 95 LASKEAFPLIAAALWESGIHNDGSP-VDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGV 173 (346)
T ss_dssp TTSTTTHHHHHHHHHHHCCCC---C-EEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTH
T ss_pred ccChhHHHHHHHHHHHhhhccCCCc-eEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEEccHH
Confidence 3444455555555554332222223 4699 9999999999999999998775 4 36688999999
Q ss_pred HHHHHhccc--c-CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCC
Q 047555 284 AASLAYGFE--R-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLND 360 (593)
Q Consensus 284 AAal~~~~~--~-~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~ 360 (593)
|||++|+.. . ++...++|||+||||||+++++++++. .+...+++..+||++|++.|.+++.++++... .+.
T Consensus 174 AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~~~g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g~~~--~i~-- 248 (346)
T 2fsj_A 174 GAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDME-PVVELSFSLQIGVGDAISALSRKIAKETGFVV--PFD-- 248 (346)
T ss_dssp HHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEETTTTE-ECGGGCEEESCCHHHHHHHHHHHHHHHHCCCC--CHH--
T ss_pred HHHHHhhccccccccCCcEEEEECCCCcEEEEEEEecCCE-EEeecCCCcchhHHHHHHHHHHHHHHHhCCCc--CCC--
Confidence 999988322 1 234779999999999999999988776 45554677899999999999988877764300 110
Q ss_pred HHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 047555 361 KQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKF-EELCSDLLDRLKKPVETALRDAKLSFNDL 439 (593)
Q Consensus 361 ~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~-e~~~~~~~~~i~~~i~~~l~~~~~~~~~i 439 (593)
.+.+| .. ..+.+. + + .++++++ +++++++++++.+.+++.|++. ..++
T Consensus 249 -------~~~~e-------~~--~~~~~~-------g-~----~~~~~~i~~~~i~~~~~~i~~~i~~~l~~~---~~~i 297 (346)
T 2fsj_A 249 -------LAQEA-------LS--HPVMFR-------Q-K----QVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRV 297 (346)
T ss_dssp -------HHHHH-------TT--SCEEET-------T-E----EECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGE
T ss_pred -------HHHHh-------cC--CeEeEC-------C-c----cCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---hhcc
Confidence 11222 00 112221 1 1 2458999 9999999999999999999876 3467
Q ss_pred CeEEEEeCCCChHhHHHHHHhHhCCCCCC---CCCChhHHHhHHHHHhh
Q 047555 440 DEVILVGGSTRIPAVQELVKKMTGKDPNV---TVNPDEVVALGAAVQGG 485 (593)
Q Consensus 440 ~~VvLvGG~s~~p~l~~~l~~~~g~~v~~---~~~p~~aVA~GAal~a~ 485 (593)
+.|+|+||++++ +++.|++.|+. +.. ..||++|+|+|+..++.
T Consensus 298 ~~IvL~GGga~l--l~~~l~~~~~~-~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 298 TSLIPVGGGSNL--IGDRFEEIAPG-TLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp EEEEEESTTHHH--HGGGGGGGSTT-CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred cEEEEECCcHHH--HHHHHHHHCcC-cEEeccCCCcHHHHHHHHHHHHh
Confidence 899999999998 99999999973 344 78999999999998754
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=235.97 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=159.1
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
....+.+.+|++.||+++..++.||.|||++++.+...+..++|+|+||||||+++++. +.+.. .+...+||++|
T Consensus 167 ~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~~~~~gv~vvDiGggttdisi~~~--g~~~~---~~~i~~GG~~i 241 (419)
T 4a2a_A 167 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTPEKDRGVVVVNLGYNFTGLIAYKN--GVPIK---ISYVPVGMKHV 241 (419)
T ss_dssp HHHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHHHHHHCEEEEEECSSSEEEEEEET--TEEEE---EEEESCCHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccccccCCEEEEEECCCcEEEEEEEC--CEEEE---EEecccHHHHH
Confidence 45678899999999999999999999999999877666678999999999999999983 33322 34578999999
Q ss_pred HHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCC-----ceeeEEeccccccCCCCceeEEEecHHHHHH
Q 047555 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSL-----TQANISLPFITATADGPKHIETTLTRAKFEE 412 (593)
Q Consensus 338 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~ 412 (593)
|+.|.+.+.-. .+.||++|+.++.. ....+.++... + .....++++++++
T Consensus 242 t~dIa~~l~~~-------------------~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~----~--~~~~~is~~~l~~ 296 (419)
T 4a2a_A 242 IKDVSAVLDTS-------------------FEESERLIITHGNAVYNDLKEEEIQYRGLD----G--NTIKTTTAKKLSV 296 (419)
T ss_dssp HHHHHHHHTCC-------------------HHHHHHHHHHHCCSCCTTCCCCEEEEECTT----S--CSEEEEEHHHHHH
T ss_pred HHHHHHHHCCC-------------------HHHHHHHHHHhccCcccCCCCceEEEeecC----C--ccceEEcHHHHHH
Confidence 99998754321 67899999998752 33445555332 1 2457899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC------CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCC-----------------
Q 047555 413 LCSDLLDRLKKPVETALRDAKL------SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVT----------------- 469 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~------~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~----------------- 469 (593)
+++|.++++.+.+++.|+.++. ....+++|+|+||+|++|+|++.+++.|+.++...
T Consensus 297 ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~~~~~~~ 376 (419)
T 4a2a_A 297 IIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVA 376 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCBTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhccCccccc
Confidence 9999999999999999999987 34567999999999999999999999998654321
Q ss_pred CCChhHHHhHHHHHhhh
Q 047555 470 VNPDEVVALGAAVQGGV 486 (593)
Q Consensus 470 ~~p~~aVA~GAal~a~~ 486 (593)
.+|..+++.|.++++..
T Consensus 377 ~~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 377 NDPSFAAAFGNVFAVSE 393 (419)
T ss_dssp TCGGGHHHHHTTCC---
T ss_pred CCchHHHHHHHHHHHhh
Confidence 48999999999998765
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=244.20 Aligned_cols=319 Identities=18% Similarity=0.242 Sum_probs=202.5
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEV 190 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~ 190 (593)
...++|||+||++++++...++.+.+. ..|...+|+... +...+.+++.+...+|+++++...
T Consensus 12 ~~~~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~-------------~~g~i~d~~~~~~~ik~~~~~~~~-- 74 (377)
T 2ych_A 12 RVEALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL-------------MEGMVAEPAALAQEIKELLLEART-- 74 (377)
T ss_dssp CCCCEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE-------------ETTEESCHHHHHHHHHHHHHHHTC--
T ss_pred CCceEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc-------------cCCCcCCHHHHHHHHHHHHHHcCC--
Confidence 346899999999999998876665542 123333344221 122334566677788888775110
Q ss_pred hhhhccCceEEEECCCCcEEE-EeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCC------------
Q 047555 191 DDESKQVSYRVVRDENGNVKL-DCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFN------------ 257 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i-~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~------------ 257 (593)
..+.. .+.-+...+.. .+. ...++.+++-.. +...+.++++.++.+.++.+|..=.
T Consensus 75 --~~~~v---~~~i~~~~~~~~~~~--~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~v 143 (377)
T 2ych_A 75 --RKRYV---VTALSNLAVILRPIQ--VPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQV 143 (377)
T ss_dssp --CCCEE---EEEECGGGCEEEEEE--EECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEESSCGGGSCTTSEEEE
T ss_pred --CcceE---EEEecCCcEEEEEEE--CCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEEeCCCCCCCCcceeEE
Confidence 00111 01111111111 000 134677776543 2345677888888899999873211
Q ss_pred ------HHHHHHHHHHHHHcCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCC
Q 047555 258 ------DSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGD 329 (593)
Q Consensus 258 ------~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~ 329 (593)
....+.+++|++.||++...++.||.|++++|... ...+..++|+|+||||||+++++.+... ..++
T Consensus 144 ~~va~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~g~~~-----~~~~ 218 (377)
T 2ych_A 144 MVAAARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRGDKPL-----AVRV 218 (377)
T ss_dssp EEEEEEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEETTEEE-----EEEE
T ss_pred EEEEecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEECCEEE-----EEEe
Confidence 12248899999999999999999999999988543 2346779999999999999999844322 2456
Q ss_pred CCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHH
Q 047555 330 THLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAK 409 (593)
Q Consensus 330 ~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~ 409 (593)
..+||.+||+.+.+.+ +.+ .+.||++|+.++.............. .+ .....+++++
T Consensus 219 ~~~GG~~i~~~i~~~~--------~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~-~~---~~~~~i~~~~ 275 (377)
T 2ych_A 219 LTLSGKDFTEAIARSF--------NLD-----------LLAAEEVKRTYGMATLPTEDEELLLD-FD---AERERYSPGR 275 (377)
T ss_dssp ESCSHHHHHHHHHHHT--------TCC-----------HHHHHHHHHHTC-----------------------------C
T ss_pred eechHHHHHHHHHHHh--------CCC-----------HHHHHHHHhhcccccccccccccccc-cc---cccccCCHHH
Confidence 7899999999988732 221 56899999998854322111000000 00 1345789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCC------------------
Q 047555 410 FEELCSDLLDRLKKPVETALRDA--KLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVT------------------ 469 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~------------------ 469 (593)
+++++++.++++.+.|++.|+.. +.....++.|+|+||++++|+|++.+++.|+.++...
T Consensus 276 ~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~~~~P~~~v~~~~~~~~~~~l 355 (377)
T 2ych_A 276 IYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLEPVNPWEAVAVDPKRFESEQL 355 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEEECCGGGGSBCCTTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeEecCchhhcccCcccCCHHHH
Confidence 99999999999999999999863 4555678999999999999999999999998654322
Q ss_pred --CCChhHHHhHHHHHhh
Q 047555 470 --VNPDEVVALGAAVQGG 485 (593)
Q Consensus 470 --~~p~~aVA~GAal~a~ 485 (593)
.+|..++|.|+++++.
T Consensus 356 ~~~~p~~a~a~Glal~~~ 373 (377)
T 2ych_A 356 QEIGPEFAVALGLALRGV 373 (377)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HhhhHHHHHHHHHHHcCC
Confidence 2456678889888754
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-23 Score=216.02 Aligned_cols=228 Identities=19% Similarity=0.245 Sum_probs=150.7
Q ss_pred CeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCC-CCHH--HH--HHHHHH------------HHHcCCceEEEe
Q 047555 217 GKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAY-FNDS--QR--TATKDA------------GRIAGLEVLRII 279 (593)
Q Consensus 217 ~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~-~~~~--~r--~~l~~A------------a~~AGl~~v~li 279 (593)
+..+++..+++.+ +.|.. +. ..+.+ .++|+++|.. |... |+ +++.+- .+.+++..+.++
T Consensus 71 ~~~~~~~~l~~i~-~aL~~-~~-~~~~~-~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 146 (320)
T 2zgy_A 71 AWQYSDVNVVAVH-HALLT-SG-LPVSE-VDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVM 146 (320)
T ss_dssp GGGGSHHHHHHHH-HHHHH-HS-CCSCE-EEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEE
T ss_pred CccchHHHHHHHH-HHHHH-cC-CCCce-EEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEe
Confidence 3456777776654 44433 11 11222 3699999987 6431 11 222221 233456789999
Q ss_pred chhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcC
Q 047555 280 NEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLN 359 (593)
Q Consensus 280 ~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~ 359 (593)
+||.||+++++.+..++..++|+|+||||+|+++++ ++...+....++..+||.+||+.+.+++.++ +.++
T Consensus 147 ~e~~aa~~~~~~~~~~~~~~~vvDiGggttd~~v~~--~g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~~i-- 217 (320)
T 2zgy_A 147 PESIPAGYEVLQELDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLA-----RTKG-- 217 (320)
T ss_dssp ESSHHHHHHHHHHSCTTCEEEEEEECSSCEEEEEEE--GGGCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SBGG--
T ss_pred cCcHHHHHhhhccccCCCCEEEEEcCCCeEEEEEEe--CCeeEEeeecCCccccHHHHHHHHHHHHHHc-----CCCC--
Confidence 999999999876555678999999999999999998 3333445556778999999999999888642 2221
Q ss_pred CHHHHHHHHHHHHHH-hhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 047555 360 DKQALQRLTEAAEKA-KMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFND 438 (593)
Q Consensus 360 ~~~~~~~L~~~~e~~-K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~ 438 (593)
. .+.+|++ |..- . .. ......+.+ -..+++.+++++.++++.+.|.+.+++. .+
T Consensus 218 ~-------~~~ae~~lk~~~-~-~~------~~~~~i~~~------~~~~~~~~~i~~~~~~~~~~i~~~i~~~----~~ 272 (320)
T 2zgy_A 218 S-------SYLADDIIIHRK-D-NN------YLKQRINDE------NKISIVTEAMNEALRKLEQRVLNTLNEF----SG 272 (320)
T ss_dssp G-------HHHHHHHHHTTT-C-HH------HHHHHSSSS------CTHHHHHHHHHHHHHHHHHHHHHHHTTC----CC
T ss_pred C-------HHHHHHHHHHhh-h-hh------cccceecCc------hhhHHHHHHHHHHHHHHHHHHHHHHHhh----cC
Confidence 1 1234444 3320 0 00 000000000 1245666677777777777777766652 46
Q ss_pred CCeEEEEeCCCChHhHHHHHHhHhCC---CCCCCCCChhHHHhHHHHHh
Q 047555 439 LDEVILVGGSTRIPAVQELVKKMTGK---DPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 439 i~~VvLvGG~s~~p~l~~~l~~~~g~---~v~~~~~p~~aVA~GAal~a 484 (593)
++.|+|+||++++ +++.|++.|+. ++....||++|+|+||++++
T Consensus 273 ~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 273 YTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp CCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred CCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 8999999999987 99999999987 47778999999999999875
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-23 Score=222.57 Aligned_cols=302 Identities=17% Similarity=0.170 Sum_probs=92.0
Q ss_pred CCeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC-----------CcEEecHHHHHhhhhCCCchhhhh
Q 047555 111 NEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI-----------GDRLVGQIAKRQAVVNPENTFFSV 179 (593)
Q Consensus 111 ~~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~-----------~~~~~G~~A~~~~~~~~~~~i~~~ 179 (593)
....|+||+||.++++++..++.|.++ +||+++.... ...++|++|....
T Consensus 5 ~~~~ivID~Gs~~~k~G~ag~~~P~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----------- 65 (394)
T 1k8k_B 5 GRKVVVCDNGTGFVKCGYAGSNFPEHI--------FPALVGRPIIRSTTKVGNIEIKDLMVGDEASELR----------- 65 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCEEEEECCCCeEEEeeCCCCCccee--------ccceeEEEcccccccccCCCCCCeEEChHHHhcC-----------
Confidence 346789999999999999877767654 5777765432 1334666553220
Q ss_pred hhhhCCCCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHH-HHHHHHhCCCcCcEEEEeCCCCCH
Q 047555 180 KRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLV-DDASKFLNDKITKAVVTVPAYFND 258 (593)
Q Consensus 180 K~~lg~~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~-~~a~~~l~~~~~~~viTVPa~~~~ 258 (593)
+...+..|.....+...+.+..+|++++ ...... ...-..+++|+|+.++.
T Consensus 66 ---------------------------~~~~~~~Pi~~G~i~dwd~~e~i~~~~~~~~~L~~-~~~~~~vllt~p~~~~~ 117 (394)
T 1k8k_B 66 ---------------------------SMLEVNYPMENGIVRNWDDMKHLWDYTFGPEKLNI-DTRNCKILLTEPPMNPT 117 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------CCceeeccccCCEEecHHHHHHHHHHHhcccccCc-CCCCCcEEEEECCCCCH
Confidence 0001111222333345556666666665 221111 11123599999999999
Q ss_pred HHHHHHHHH-HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 259 SQRTATKDA-GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 259 ~~r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
.+|+++.++ ++.+|++.+.+++||.||+++++. ...+|||+|+|+|+++.+..+ .. +........+||+++
T Consensus 118 ~~r~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-----~~~lVVDiG~g~T~v~pv~~G--~~-~~~~~~~~~~GG~~l 189 (394)
T 1k8k_B 118 KNREKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-----LTGVVVDSGDGVTHICPVYEG--FS-LPHLTRRLDIAGRDI 189 (394)
T ss_dssp -----------------------------------------CCEEEECSSCEEEECEETT--EE-CSTTCEEESCCHHHH
T ss_pred HHHHHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-----ceEEEEEcCCCceEeeeeECC--EE-cccceEEeeccHHHH
Confidence 999999886 588899999999999999999876 355999999999999877643 21 111123468999999
Q ss_pred HHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc----------------eeeEEeccccccCCCCcee
Q 047555 338 DKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT----------------QANISLPFITATADGPKHI 401 (593)
Q Consensus 338 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------------~~~i~i~~~~~~~~~~~~~ 401 (593)
|+.|.++|..+. +......+ .+.+|++|+.++... ...+.+| +..
T Consensus 190 t~~l~~~l~~~~---~~~~~~~~-------~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lp---------dg~ 250 (394)
T 1k8k_B 190 TRYLIKLLLLRG---YAFNHSAD-------FETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLP---------DGR 250 (394)
T ss_dssp HHHHHHHHHHTT---CCCCTTTT-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT---------TSC
T ss_pred HHHHHHHHHhcC---CCCCcHHH-------HHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECC---------CCC
Confidence 999999998651 11110112 345566666654321 1112222 123
Q ss_pred EEEecHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhCC-------
Q 047555 402 ETTLTRAKF---EELCSDL-----LDRLKKPVETALRDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTGK------- 464 (593)
Q Consensus 402 ~~~itr~~~---e~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g~------- 464 (593)
.+.|+.++| |.+|+|. ...+.+.|.+.|.++... ..-.+.|+|+||+|.+|++.++|++.++.
T Consensus 251 ~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~~~~ 330 (394)
T 1k8k_B 251 IIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVL 330 (394)
T ss_dssp EEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHHHTC
T ss_pred EEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhhhhc
Confidence 577788777 3445542 245778888888876533 12236799999999999999999887742
Q ss_pred ----------CC--CCCCCChhHHHhHHHHHhhh
Q 047555 465 ----------DP--NVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 465 ----------~v--~~~~~p~~aVA~GAal~a~~ 486 (593)
++ ....+|..++++|++++|..
T Consensus 331 ~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 364 (394)
T 1k8k_B 331 KGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLADI 364 (394)
T ss_dssp SSCCCTTCCCCC----------------------
T ss_pred ccccCCCCceEEEEecCCCcceeEEhhhHHhhCC
Confidence 22 22567889999999999874
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-20 Score=165.97 Aligned_cols=98 Identities=61% Similarity=1.000 Sum_probs=94.2
Q ss_pred EEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcC
Q 047555 496 LLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 575 (593)
Q Consensus 496 ~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~ 575 (593)
+.|++|+++|+++.+|.|.+||++|+++|++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.|+|++|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCceEEEEc
Q 047555 576 QIEVKFDIDANGILSVTA 593 (593)
Q Consensus 576 ~i~v~f~~d~~g~l~v~a 593 (593)
+|+|+|++|.||+|+|+|
T Consensus 82 ~IeVtf~iD~nGiL~Vsa 99 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSA 99 (152)
T ss_dssp CEEEEEEECTTCCEEEEE
T ss_pred eEEEEEEeCCCCeEEEEE
Confidence 999999999999999986
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-20 Score=165.59 Aligned_cols=98 Identities=71% Similarity=1.102 Sum_probs=94.2
Q ss_pred EEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcC
Q 047555 496 LLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 575 (593)
Q Consensus 496 ~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~ 575 (593)
+.|++|+++|+++.+|.|.+||+||+++|++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.|+|++|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCceEEEEc
Q 047555 576 QIEVKFDIDANGILSVTA 593 (593)
Q Consensus 576 ~i~v~f~~d~~g~l~v~a 593 (593)
+|+|+|++|.||+|+|+|
T Consensus 82 ~IeVtf~iD~nGiL~Vsa 99 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSA 99 (151)
T ss_dssp CEEEEEEECTTSEEEEEE
T ss_pred EEEEEEEeccCcEEEEEE
Confidence 999999999999999986
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.9e-20 Score=165.64 Aligned_cols=98 Identities=61% Similarity=0.966 Sum_probs=94.9
Q ss_pred EEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcC
Q 047555 496 LLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 575 (593)
Q Consensus 496 ~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~ 575 (593)
+.|++|+++|+++.+|.|.+||+||+++|++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.|+|++|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCceEEEEc
Q 047555 576 QIEVKFDIDANGILSVTA 593 (593)
Q Consensus 576 ~i~v~f~~d~~g~l~v~a 593 (593)
+|+|+|++|.||+|+|+|
T Consensus 82 ~I~Vtf~iD~nGiL~V~a 99 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSA 99 (152)
T ss_dssp CEEEEEEECTTSEEEEEE
T ss_pred eEEEEEEEcCCCEEEEEE
Confidence 999999999999999986
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-19 Score=174.02 Aligned_cols=99 Identities=70% Similarity=1.083 Sum_probs=96.4
Q ss_pred EEEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCc
Q 047555 495 VLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV 574 (593)
Q Consensus 495 ~~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~ 574 (593)
+++|++|+++|+++.+|.|.+|||||+++|++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.|+|++|+|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEECCCceEEEEc
Q 047555 575 PQIEVKFDIDANGILSVTA 593 (593)
Q Consensus 575 ~~i~v~f~~d~~g~l~v~a 593 (593)
++|+|+|++|.||+|+|+|
T Consensus 82 ~~IeVtf~iD~nGiL~V~a 100 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSA 100 (219)
T ss_dssp SCEEEEEEECTTCCEEEEE
T ss_pred ceEEEEEEeCCCCCEeeee
Confidence 9999999999999999986
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.5e-19 Score=168.13 Aligned_cols=103 Identities=71% Similarity=1.031 Sum_probs=94.3
Q ss_pred CCceEEEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCC
Q 047555 491 VSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 570 (593)
Q Consensus 491 ~~~~~~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~ 570 (593)
...+.+.|++|+++|+++.+|.|.+|||||+++|++++++|++..|+|+.+.|.||||++.+..+|..||+|.|.|+|++
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCeEEEEEEECCCceEEEEc
Q 047555 571 PRGVPQIEVKFDIDANGILSVTA 593 (593)
Q Consensus 571 ~~g~~~i~v~f~~d~~g~l~v~a 593 (593)
|+|.++|+|+|++|.||+|+|+|
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA 119 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSA 119 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEE
T ss_pred CCCCeeEEEEEEEecCCEEEEEE
Confidence 99999999999999999999986
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-20 Score=162.09 Aligned_cols=103 Identities=65% Similarity=1.006 Sum_probs=93.9
Q ss_pred CCceEEEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCC
Q 047555 491 VSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPA 570 (593)
Q Consensus 491 ~~~~~~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~ 570 (593)
.+++.+.|++|+++|+++.++.|.+||+||+++|++++++|++..|+|+.+.|.|||||+.+..+|..||+|.|.|+|++
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCeEEEEEEECCCceEEEEc
Q 047555 571 PRGVPQIEVKFDIDANGILSVTA 593 (593)
Q Consensus 571 ~~g~~~i~v~f~~d~~g~l~v~a 593 (593)
|+|.++|+|+|++|.||+|+|+|
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a 116 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSA 116 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEE
T ss_pred CCceeEEEEEEEECCCCEEEEEE
Confidence 99999999999999999999986
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.6e-19 Score=188.04 Aligned_cols=182 Identities=16% Similarity=0.171 Sum_probs=132.5
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeC---CcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKI---GDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS 188 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~---~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~ 188 (593)
...|+||+||.++++++..++.|.++ +||+|+...+ ...++|+++...
T Consensus 23 ~~~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~--------------------- 73 (498)
T 3qb0_A 23 VSAVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGI--------------------- 73 (498)
T ss_dssp BSCEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGS---------------------
T ss_pred CCeEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhc---------------------
Confidence 35689999999999999877767665 6999998653 245678753111
Q ss_pred hhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcC-cEEEEeCCCCCHHHHHHHHHH
Q 047555 189 EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKIT-KAVVTVPAYFNDSQRTATKDA 267 (593)
Q Consensus 189 ~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~-~~viTVPa~~~~~~r~~l~~A 267 (593)
..+.+.+..|.....+...+.+..+|+++...... ...... .+++|.|.......|+.|.++
T Consensus 74 ----------------~r~~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~~L~-v~p~~~~pvlltep~~n~~~~Re~~~ei 136 (498)
T 3qb0_A 74 ----------------PRKDYELKPIIENGLVIDWDTAQEQWQWALQNELY-LNSNSGIPALLTEPVWNSTENRKKSLEV 136 (498)
T ss_dssp ----------------CCTTEEEEESEETTEESCHHHHHHHHHHHHHHTSC-CSCCTTCCEEEEECTTCCHHHHHHHHHH
T ss_pred ----------------CcCceEEeccCcCCEEccHHHHHHHHHHHHHhhhC-CCcccCCceEEEeCCCCcHHHHHHHHHH
Confidence 01223344444455667788888888888753211 111123 699999999999999999997
Q ss_pred -HHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHH
Q 047555 268 -GRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLA 346 (593)
Q Consensus 268 -a~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~ 346 (593)
++.+|++.+.++.+|.+|+++++.. .-||||+|+|+|+++.+..+ . .+........+||+++|+.|.++|.
T Consensus 137 lFE~f~vpav~l~~~~vlalya~G~~-----tglVVDiG~g~T~vvPI~~G--~-~l~~ai~rl~vgG~~lt~~L~~lL~ 208 (498)
T 3qb0_A 137 LLEGMQFEACYLAPTSTCVSFAAGRP-----NCLVVDIGHDTCSVSPIVDG--M-TLSKSTRRNFIAGKFINHLIKKALE 208 (498)
T ss_dssp HHTTSCCSEEEEEEHHHHHHHHHTCS-----SEEEEEECSSCEEEEEEETT--E-ECGGGCEEESCSHHHHHHHHHHHTT
T ss_pred HHhhcCCCeEeecchHHHHHHHcCCC-----eEEEEEcCCCcEEEEEEeCC--E-EccccceeccccHHHHHHHHHHHHH
Confidence 5889999999999999999999863 24999999999999988633 1 1111122358999999999999987
Q ss_pred H
Q 047555 347 E 347 (593)
Q Consensus 347 ~ 347 (593)
.
T Consensus 209 ~ 209 (498)
T 3qb0_A 209 P 209 (498)
T ss_dssp T
T ss_pred h
Confidence 5
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=158.82 Aligned_cols=98 Identities=63% Similarity=1.026 Sum_probs=94.5
Q ss_pred EEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcC
Q 047555 496 LLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 575 (593)
Q Consensus 496 ~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~ 575 (593)
+.|++|++||+++.++.|.+||++|++||++++..|++..|+|+.+.|.||||++.+..+|..||+|.|.|+|+.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCceEEEEc
Q 047555 576 QIEVKFDIDANGILSVTA 593 (593)
Q Consensus 576 ~i~v~f~~d~~g~l~v~a 593 (593)
+|+|+|++|.||+|+|+|
T Consensus 82 ~I~V~f~id~nGiL~V~a 99 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSA 99 (152)
T ss_dssp CEEEEEEECTTSCEEEEE
T ss_pred eEEEEEEECCCcEEEEEE
Confidence 999999999999999986
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=177.39 Aligned_cols=204 Identities=17% Similarity=0.226 Sum_probs=137.9
Q ss_pred cEEEEeCCCCCHHHH-HHHHHHHHHcCC------------ceEEEechhHHHHHHhccccC------CCceEEEEeeCCc
Q 047555 247 KAVVTVPAYFNDSQR-TATKDAGRIAGL------------EVLRIINEPTAASLAYGFERK------NNETILVFDLGGG 307 (593)
Q Consensus 247 ~~viTVPa~~~~~~r-~~l~~Aa~~AGl------------~~v~li~Ep~AAal~~~~~~~------~~~~vlVvD~Ggg 307 (593)
.+++++|..+...++ +++++++...+- ..+.+++||.||+++++.+.. .+..++|+|+|||
T Consensus 115 ~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGgg 194 (355)
T 3js6_A 115 VIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSG 194 (355)
T ss_dssp EEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECSS
T ss_pred EEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCCC
Confidence 689999998887776 589998875543 578899999999999876532 3788999999999
Q ss_pred eEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEE
Q 047555 308 TFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANIS 387 (593)
Q Consensus 308 T~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~ 387 (593)
|||++++. ++.+ +...++...+||..+++++.+++.+++. +..+. . +..++.+. +..
T Consensus 195 Ttd~~v~~--~~~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~---g~~l~--~-------~~i~~g~~-~~~------- 251 (355)
T 3js6_A 195 TTIIDTYQ--NMKR-VEEESFVINKGTIDFYKRIASHVSKKSE---GASIT--P-------RMIEKGLE-YKQ------- 251 (355)
T ss_dssp CEEEEEEE--TTEE-CGGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHSCCC-----------
T ss_pred cEEEEEEc--CCEE-ccccccCcchHHHHHHHHHHHHHHHhcC---CCcCC--H-------HHHhcCCc-ccc-------
Confidence 99999993 3332 1112334679999999999999887642 11111 1 11111111 000
Q ss_pred eccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHh--HHHHHHhHhCCC
Q 047555 388 LPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPA--VQELVKKMTGKD 465 (593)
Q Consensus 388 i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~--l~~~l~~~~g~~ 465 (593)
...+..+ .+.+ .+.+++.+++++++|.+.|++.+.+ ...++.|+|+||++.++. |++.|++.|+..
T Consensus 252 -----~~~~~~k--~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~~~~~~ 319 (355)
T 3js6_A 252 -----CKLNQKT--VIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSDVFEKA 319 (355)
T ss_dssp -----------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSSCEECC
T ss_pred -----ccccccc--cccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHHHCCCC
Confidence 0000000 0111 2456777777777777777777754 355789999999999998 889999988442
Q ss_pred CCCCCCChhHHHhHHHHHhhhhcC
Q 047555 466 PNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 466 v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.||.+|+|+|+..++..+.+
T Consensus 320 ----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 320 ----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp ----SSGGGHHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHHHHh
Confidence 99999999999999876643
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-19 Score=190.90 Aligned_cols=250 Identities=16% Similarity=0.124 Sum_probs=161.5
Q ss_pred CeeeeHHHHHHHHHHHHHHHHHHHhCCC--cCcEEEEeCCCCCHHHHHHHHHHH-HHcCCceEEEechhHHHHHHhcccc
Q 047555 217 GKQFAAEEISAQVLRKLVDDASKFLNDK--ITKAVVTVPAYFNDSQRTATKDAG-RIAGLEVLRIINEPTAASLAYGFER 293 (593)
Q Consensus 217 ~~~~~~~~l~~~~L~~l~~~a~~~l~~~--~~~~viTVPa~~~~~~r~~l~~Aa-~~AGl~~v~li~Ep~AAal~~~~~~ 293 (593)
...+...+.+..+|+++... .++.. -..+++|.|.......|+.|.+++ +.+|++.+.++.+|.+|+++.+...
T Consensus 96 ~GvI~dwd~~e~iw~~~~~~---~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~~ 172 (427)
T 3dwl_A 96 HGQIENWDHMERFWQQSLFK---YLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSS 172 (427)
T ss_dssp TTEECCHHHHHHHHHHHHHT---TSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGST
T ss_pred cCeeccHHHHHHHHHHHHhH---hhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCcc
Confidence 44556778888888877642 23322 236999999999999999999886 7899999999999999999987532
Q ss_pred C---CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHH
Q 047555 294 K---NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEA 370 (593)
Q Consensus 294 ~---~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 370 (593)
+ ....-||||+|+|+|+++.+..+ . .+........+||+++|+.|.++|..+.....+ .+.
T Consensus 173 ~~~~~~~tglVVDiG~g~T~v~PV~~G--~-~l~~~~~rl~~gG~~lt~~L~~lL~~~~~~~~~-------------~~~ 236 (427)
T 3dwl_A 173 KVTDRSLTGTVVDSGDGVTHIIPVAEG--Y-VIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSS-------------LKT 236 (427)
T ss_dssp TTCSCCCCEEEEEESSSCEEEEEEETT--E-ECGGGCEEESCCHHHHHHHHHHTTC---------------------CHH
T ss_pred cccCCCceEEEEECCCCceEEEEEECC--E-EehhhheeccccHHHHHHHHHHHHHHcCCCchh-------------HHH
Confidence 1 13467999999999999998533 1 111112235899999999999988765432111 345
Q ss_pred HHHHhhhcCCCcee---e--------EEeccccc-cCCCCceeEEEecHHHH---HHHHHHH------HHHHHHHHHHHH
Q 047555 371 AEKAKMELSSLTQA---N--------ISLPFITA-TADGPKHIETTLTRAKF---EELCSDL------LDRLKKPVETAL 429 (593)
Q Consensus 371 ~e~~K~~Ls~~~~~---~--------i~i~~~~~-~~~~~~~~~~~itr~~~---e~~~~~~------~~~i~~~i~~~l 429 (593)
+|++|+.++..... + ..+..... ..++ ....+.+..++| |-+|+|- ...|.++|.+.|
T Consensus 237 ~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g-~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i~~sI 315 (427)
T 3dwl_A 237 AERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITG-HSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVV 315 (427)
T ss_dssp HHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC----------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHHHHHH
T ss_pred HHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCC-CeeEEEEChHhhhChhhccCchhcCCccCCCccHHHHHHH
Confidence 66777766542110 0 00000000 0111 123466777776 4455552 245778888888
Q ss_pred HHcCCC--CCCCCeEEEEeCCCChHhHHHHHHhHhC----------------------CCCCCCCCChhHHHhHHHHHhh
Q 047555 430 RDAKLS--FNDLDEVILVGGSTRIPAVQELVKKMTG----------------------KDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 430 ~~~~~~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g----------------------~~v~~~~~p~~aVA~GAal~a~ 485 (593)
.++... ..-...|+|+||++.+|++.++|++.+. .++..+.++..++++|++++|.
T Consensus 316 ~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGSilas 395 (427)
T 3dwl_A 316 QSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQ 395 (427)
T ss_dssp HTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHHHHHH
T ss_pred HhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCceeecc
Confidence 875432 1112469999999999999999987651 1223345778999999999986
Q ss_pred h
Q 047555 486 V 486 (593)
Q Consensus 486 ~ 486 (593)
.
T Consensus 396 l 396 (427)
T 3dwl_A 396 T 396 (427)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=160.57 Aligned_cols=97 Identities=56% Similarity=0.956 Sum_probs=94.0
Q ss_pred EecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCe
Q 047555 497 LDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ 576 (593)
Q Consensus 497 ~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~ 576 (593)
+|++|+++|+++.++.|.+||++|+++|++++++|++..|+|+.+.|.||||++.++.+|..||+|.|.|+|++|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCceEEEEc
Q 047555 577 IEVKFDIDANGILSVTA 593 (593)
Q Consensus 577 i~v~f~~d~~g~l~v~a 593 (593)
|+|+|++|.||+|+|+|
T Consensus 81 I~Vtf~iD~nGiL~V~a 97 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTA 97 (227)
T ss_dssp EEEEEEECTTCCEEEEE
T ss_pred EEEEEEECCCCcEEEEe
Confidence 99999999999999986
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.72 E-value=2.4e-17 Score=165.75 Aligned_cols=185 Identities=18% Similarity=0.202 Sum_probs=122.3
Q ss_pred cCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhh
Q 047555 271 AGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFK 350 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~ 350 (593)
++......++|++|.++++..... ....|+|+|||+++++++. .++.++.....+....|+.++++.+.+++...+.
T Consensus 69 a~~~~~~~Vne~~aha~a~~~~~~--~~~~vl~lgG~~~~~~~~~-~~g~~~~~~~~~~~~~g~G~f~d~~a~~l~~~~~ 145 (276)
T 4ehu_A 69 NYSDADKQISELSCHARGVNFIIP--ETRTIIDIGGQDAKVLKLD-NNGRLLNFLMNDKCAAGTGRFLDVMAKIIEVDVS 145 (276)
T ss_dssp GCCSCSEECCHHHHHHHHHHHHST--TCCEEEEECSSCEEEEEEC-TTSCEEEEEEECSCSTTSHHHHHHHHHHHTCCGG
T ss_pred HhhCCCcccchHHHHHHHHHHhCC--CCCeEEEEcCCCceEEEEE-ecCceEEEEeCCCcCcchhhHHHHHHHHhccChh
Confidence 556677899999999988766543 3447899999999999885 5667777777777888988888888888765443
Q ss_pred hhhCCCCcCCHHHHHHHHHHHHHHhhh--cCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHH
Q 047555 351 RDEGVVLLNDKQALQRLTEAAEKAKME--LSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETA 428 (593)
Q Consensus 351 ~~~~~~~~~~~~~~~~L~~~~e~~K~~--Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~ 428 (593)
.... .+.+++.. ++.....-...+....... ....++++..+.+.+.+.+...
T Consensus 146 ~~~~---------------~~~~a~~~~~i~~~~~~f~~s~~~~~~~~----------~~~~~di~a~~~~~v~~~l~~~ 200 (276)
T 4ehu_A 146 ELGS---------------ISMNSQNEVSISSTCTVFAESEVISHLSE----------NAKIEDIVAGIHTSVAKRVSSL 200 (276)
T ss_dssp GHHH---------------HHTTCSSCCCCCCCSHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHH---------------HHhcCCCCCCcCCccchhhhhHHHHhhhc----------cccHHHHHHHHHHHHHHHHHHH
Confidence 2210 01111100 0000000000000000000 0112455666665555555544
Q ss_pred HHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 429 LRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 429 l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
..+. ..++.|+|+||.+++|.|++.|++.+|.++..+.+|++++|+|||++|...
T Consensus 201 ~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~ 255 (276)
T 4ehu_A 201 VKRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDE 255 (276)
T ss_dssp HHHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHH
T ss_pred HHhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHH
Confidence 4443 346789999999999999999999999999999999999999999998654
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=171.77 Aligned_cols=202 Identities=20% Similarity=0.190 Sum_probs=141.2
Q ss_pred cEEEEeCCCCCH--HHHHHHHHHHHHc--------C------CceEEEechhHHHHHHhccccCCCceEEEEeeCCceEE
Q 047555 247 KAVVTVPAYFND--SQRTATKDAGRIA--------G------LEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFD 310 (593)
Q Consensus 247 ~~viTVPa~~~~--~~r~~l~~Aa~~A--------G------l~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~D 310 (593)
.+++++|..+.. .+|+.+++.+..- | ++.+.+++||.+|.+.+. ...++..++|+|+||||||
T Consensus 107 ~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~-~~~~~~~v~vvDiGggTtd 185 (329)
T 4apw_A 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ-ENFKNKNVAVIDFGGLNMG 185 (329)
T ss_dssp EEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSC-CCCTTCEEEEEEECSSCEE
T ss_pred EEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcc-hhhccCCEEEEEeCCCcEE
Confidence 689999987664 3677787776631 2 245788999999988764 3335789999999999999
Q ss_pred EEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHH-HhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEec
Q 047555 311 VSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAE-NFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLP 389 (593)
Q Consensus 311 vsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~ 389 (593)
++++.. +.+ +...++...+||.++++.+.+++.+ +++...+ ...+|++|+. .. ..
T Consensus 186 ~~v~~~--g~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~g~~i~-------------~~~~e~i~~~-g~---~~---- 241 (329)
T 4apw_A 186 FSLYRN--CVV-NPSERFIEEHGVKDLIIRVGDALTDLNNGNLIT-------------NEQAESALNN-GY---MK---- 241 (329)
T ss_dssp EEEEET--TEE-CGGGCEEESCCHHHHHHHHHTSSSSCSSCSCTT-------------SBTTTTCSSS-CS---SC----
T ss_pred EEEEEC--CEE-eeccccchhhHHHHHHHHHHHHHHhhccCCCCC-------------HHHHHHHHhc-CC---cc----
Confidence 999993 332 2222345779999999999988776 5443221 1123344432 11 00
Q ss_pred cccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCC
Q 047555 390 FITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVT 469 (593)
Q Consensus 390 ~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~ 469 (593)
... + . ..+..+.+++.++++++.|.+.+++. . .....++.|+|+||++.+ +.+.|++.|+.++...
T Consensus 242 -~g~--~----~-~~~~~~~i~~~~~e~~~~I~~~i~~~-~---~~~~~~~~IvltGGGA~l--~~~~l~~~~~~~v~v~ 307 (329)
T 4apw_A 242 -KGG--E----I-DTESSTVIKKVKEKFLKDAIKLIEKR-G---FKLDQLDSLIFIGGTTQK--LKEQISKTYPNNSIIT 307 (329)
T ss_dssp -EEC--T----T-CCSTTHHHHHHHHHHHHHHHHHHHHH-T---CCTTSCSEEEEESTTHHH--HHHHHHHHSTTCEECC
T ss_pred -cCC--c----c-hhHHHHHHHHHHHHHHHHHHHHHHHc-C---CCHHHccEEEEECChHHH--HHHHHHHHcCCCCEec
Confidence 000 0 0 12456777888888888877777766 2 334447899999999987 6799999998778889
Q ss_pred CCChhHHHhHHHHHhhhh
Q 047555 470 VNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 470 ~~p~~aVA~GAal~a~~l 487 (593)
.||.+|+|+|+..++...
T Consensus 308 ~~P~~a~a~G~~~~~~~k 325 (329)
T 4apw_A 308 NNSQWTTCEGLYKVAVAK 325 (329)
T ss_dssp SSGGGHHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHhhh
Confidence 999999999999887643
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.2e-14 Score=159.84 Aligned_cols=116 Identities=15% Similarity=0.215 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCcC-----cEEEEeCCCCCHHHHHHHHHH-HHHcCCceEEEechhHHHHHHhccccCC
Q 047555 222 AEEISAQVLRKLVDDASKFLNDKIT-----KAVVTVPAYFNDSQRTATKDA-GRIAGLEVLRIINEPTAASLAYGFERKN 295 (593)
Q Consensus 222 ~~~l~~~~L~~l~~~a~~~l~~~~~-----~~viTVPa~~~~~~r~~l~~A-a~~AGl~~v~li~Ep~AAal~~~~~~~~ 295 (593)
..+-+..+|+|++. +.++.... .+++|.|..++...|+.|.+. ++..|+..+.++.++.+|+++++..
T Consensus 173 ~wdd~e~iw~~~~~---~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~--- 246 (593)
T 4fo0_A 173 VLADIEVIWSHAIQ---KYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS--- 246 (593)
T ss_dssp HHHHHHHHHHHHHH---HTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS---
T ss_pred CHHHHHHHHHHHHH---HhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC---
Confidence 34444444444443 34554332 499999999999999999877 7788999999999999999999865
Q ss_pred CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHH
Q 047555 296 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAEN 348 (593)
Q Consensus 296 ~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~ 348 (593)
+-+|||+|.+.|+++-+.-+-. +........+||.++++.|.++|..+
T Consensus 247 --tglVVDiG~~~T~v~PV~dG~~---l~~~~~rl~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 247 --STCIVDVGDQKTSVCCVEDGVS---HRNTRLCLAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp --EEEEEEECSSCEEEEEEESSCB---CGGGCEEESCCHHHHHHHHHHHHHHT
T ss_pred --ceEEEEeCCCceeeeeeECCEE---ehhheEEecccHHHHHHHHHHHHHhc
Confidence 4599999999999998875421 11112225799999999999988765
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-12 Score=134.46 Aligned_cols=200 Identities=20% Similarity=0.192 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHHHc-CC--ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccH
Q 047555 258 DSQRTATKDAGRIA-GL--EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGG 334 (593)
Q Consensus 258 ~~~r~~l~~Aa~~A-Gl--~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG 334 (593)
..+-+.+.+|.+++ |+ ++-. .||.||+++++.+.+.+..++++|+||||||++++.-+...+ ......||
T Consensus 367 ~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeDE~eLGvaiIDmGGGTTd~sVf~~G~lv~-----a~~ip~gG 439 (610)
T 2d0o_A 367 RLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGDII-----ATHLAGAG 439 (610)
T ss_dssp CCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECTTCCEE-----EEEEECSH
T ss_pred HHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccch
Confidence 44678889999999 99 6655 999999999999999999999999999999999999776554 44467899
Q ss_pred HHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc----------eeeEEe--cccccc-CCC----
Q 047555 335 DDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT----------QANISL--PFITAT-ADG---- 397 (593)
Q Consensus 335 ~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------~~~i~i--~~~~~~-~~~---- 397 (593)
++++..+..-|.-. + +..||++|. +.... ...+.+ +.+... ...
T Consensus 440 ~~VT~DIA~~Lgt~-----------d-------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~~Rv~~~ 500 (610)
T 2d0o_A 440 DMVTMIIARELGLE-----------D-------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVV 500 (610)
T ss_dssp HHHHHHHHHHHTCC-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEE
T ss_pred HHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeecc
Confidence 99999887655422 0 458899998 54221 122333 222111 111
Q ss_pred CceeEEEecHHH--HHHHHHHHHHHHHHH--HHHHHHHcCC-----CCCCCCeEEEEeCCCChHhHHHHHHhHhCC-CCC
Q 047555 398 PKHIETTLTRAK--FEELCSDLLDRLKKP--VETALRDAKL-----SFNDLDEVILVGGSTRIPAVQELVKKMTGK-DPN 467 (593)
Q Consensus 398 ~~~~~~~itr~~--~e~~~~~~~~~i~~~--i~~~l~~~~~-----~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~v~ 467 (593)
....-..| +.+ +|+ ++-+-+++.+. +.+.|+..+. +..+|..|+|+||+|+++.+.+..++.|+. ++.
T Consensus 501 ~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL~~y~VR 578 (610)
T 2d0o_A 501 KADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLV 578 (610)
T ss_dssp CSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCE
T ss_pred cccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeE
Confidence 00112355 666 777 66666665554 3444555432 235679999999999999999999999976 432
Q ss_pred -------CCCCChhHHHhHHHHHhh
Q 047555 468 -------VTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 468 -------~~~~p~~aVA~GAal~a~ 485 (593)
....|..|+|.|.+++..
T Consensus 579 iGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 579 AGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp EEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred EecCCccccCCCcHHHHHHHHHHHh
Confidence 246999999999998754
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.36 E-value=2.7e-12 Score=135.13 Aligned_cols=197 Identities=17% Similarity=0.148 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHc-CC--ceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHH
Q 047555 259 SQRTATKDAGRIA-GL--EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGD 335 (593)
Q Consensus 259 ~~r~~l~~Aa~~A-Gl--~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~ 335 (593)
.+-+.+.+|.+++ |+ ++-. .||.||+++++.+.+.+..++++|+||||||++++.-+...+ ......||+
T Consensus 370 ~~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTedE~elGvaiIDmGgGTTd~sVf~~g~lv~-----a~~ip~gG~ 442 (607)
T 1nbw_A 370 LQMQVIARELSARLQTEVVVGG--VEANMAIAGALTTPGCAAPLAILDLGAGSTDAAIVNAEGQIT-----AVHLAGAGN 442 (607)
T ss_dssp CCSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTSTTCCSSEEEEEECSSEEEEEEECSSSCEE-----EEEEECCHH
T ss_pred HHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCCCCcCCeEEEEeCCCcceEEEEcCCcEEE-----EEEeccchH
Confidence 3456788888888 88 4444 999999999999999999999999999999999999776654 444678999
Q ss_pred HHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCc----------eeeEEe--cccccc-CCC-----
Q 047555 336 DFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLT----------QANISL--PFITAT-ADG----- 397 (593)
Q Consensus 336 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------~~~i~i--~~~~~~-~~~----- 397 (593)
+++..+..-|.-. + +..||++|. +.... ...+.+ +.+... ...
T Consensus 443 ~VT~DIA~~Lg~~-----------d-------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~R~~~~~ 503 (607)
T 1nbw_A 443 MVSLLIKTELGLE-----------D-------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIK 503 (607)
T ss_dssp HHHHHHHHHHTCS-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEE
T ss_pred HHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeeeeeccc
Confidence 9999887655422 0 458899998 54221 112333 222111 111
Q ss_pred CceeEEEecHHH--HHHHHHHHHHHHHHH--HHHHHHHcCCC-----CCCCCeEEEEeCCCChHhHHHHHHhHhCC-CCC
Q 047555 398 PKHIETTLTRAK--FEELCSDLLDRLKKP--VETALRDAKLS-----FNDLDEVILVGGSTRIPAVQELVKKMTGK-DPN 467 (593)
Q Consensus 398 ~~~~~~~itr~~--~e~~~~~~~~~i~~~--i~~~l~~~~~~-----~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~v~ 467 (593)
+ ..-..| +.+ +|+ ++-+-+++.+. +.+.|+..+.. ..+|..|+|+||+|+++.+.++.++.|+. ++.
T Consensus 504 ~-~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~~~VR 580 (607)
T 1nbw_A 504 E-GELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVV 580 (607)
T ss_dssp T-TEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCE
T ss_pred c-cceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCcCCeE
Confidence 0 112355 566 777 66666666554 45567776653 34669999999999999999999999965 432
Q ss_pred -------CCCCChhHHHhHHHHHh
Q 047555 468 -------VTVNPDEVVALGAAVQG 484 (593)
Q Consensus 468 -------~~~~p~~aVA~GAal~a 484 (593)
....|..|+|.|.+++.
T Consensus 581 iGrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 581 AGQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp EEECCGGGTSCSCCHHHHHHHHHH
T ss_pred EecCCccccCCchHHHHHHHHHhh
Confidence 24699999999999874
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.5e-10 Score=122.53 Aligned_cols=145 Identities=17% Similarity=0.206 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCc-----CcEEEEeCCCCCHHHHHHHHHHH-HHcCCceEEEechhHHHHHHhccccCCC
Q 047555 223 EEISAQVLRKLVDDASKFLNDKI-----TKAVVTVPAYFNDSQRTATKDAG-RIAGLEVLRIINEPTAASLAYGFERKNN 296 (593)
Q Consensus 223 ~~l~~~~L~~l~~~a~~~l~~~~-----~~~viTVPa~~~~~~r~~l~~Aa-~~AGl~~v~li~Ep~AAal~~~~~~~~~ 296 (593)
.+.+..+|+++... ..++... ..+++|+|..+....|+.|.+++ +..|++.+.++.+|.+|+++++. .
T Consensus 196 WD~mE~Iw~y~f~~--~~L~V~p~~~~e~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl----~ 269 (655)
T 4am6_A 196 ISDVTKLLEHALNS--ETLNVKPTKFNQYKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI----S 269 (655)
T ss_dssp HHHHHHHHHHHHBS--SSCBCCGGGGGGCEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC----S
T ss_pred HHHHHHHHHHHhcc--ccccccccccCCCcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC----C
Confidence 55666666665531 1333322 36999999999999999998885 67999999999999999999874 2
Q ss_pred ceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhh
Q 047555 297 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKM 376 (593)
Q Consensus 297 ~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 376 (593)
..-||||+|+|+|+++.+..+ . .+........+||.++|+.|.++|..+--......+... .=++.++.+|+
T Consensus 270 ttGLVVDiG~g~T~VvPV~eG--~-vl~~ai~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t~-----~e~eiVrdIKE 341 (655)
T 4am6_A 270 TSTCVVNIGAAETRIACVDEG--T-VLEHSAITLDYGGDDITRLFALFLLQSDFPLQDWKIDSK-----HGWLLAERLKK 341 (655)
T ss_dssp SCEEEEEECSSCEEEEEEETT--E-ECGGGCEEESCCHHHHHHHHHHHHHHTTCSCCSCCTTSH-----HHHHHHHHHHH
T ss_pred CceEEEcCCCceEEEEEEeCC--E-EEhhheeeecchHHHHHHHHHHHHHHcCCCccccCCCCc-----chHHHHHHHHH
Confidence 356999999999999988633 1 111112236899999999999999875210000111110 11456777787
Q ss_pred hcCCC
Q 047555 377 ELSSL 381 (593)
Q Consensus 377 ~Ls~~ 381 (593)
.++..
T Consensus 342 k~CyV 346 (655)
T 4am6_A 342 NFTTF 346 (655)
T ss_dssp HHCCC
T ss_pred heEEE
Confidence 77654
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.83 E-value=9.9e-08 Score=94.94 Aligned_cols=73 Identities=15% Similarity=0.160 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
++++..+++.+...+.+.++..+. .+.|+++||.++++.+++.+++.++.++..+.+|+.+.|+|||++|...
T Consensus 185 ~di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 185 IDIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 444445555555555444443221 3679999999999999999999999998888889889999999998753
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0016 Score=64.47 Aligned_cols=74 Identities=18% Similarity=0.168 Sum_probs=53.6
Q ss_pred cHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeC-CCChHhHHHHHHhHh---CCCCCCCCCChhHHHhHH
Q 047555 406 TRAKFE-ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGG-STRIPAVQELVKKMT---GKDPNVTVNPDEVVALGA 480 (593)
Q Consensus 406 tr~~~e-~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG-~s~~p~l~~~l~~~~---g~~v~~~~~p~~aVA~GA 480 (593)
+++++. .++..+.+++..+...+.+..+ ++.|+++|| .+..|.+++.+++.+ +.++..+.+|..+.|.||
T Consensus 208 ~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlGA 282 (287)
T 2ews_A 208 TPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGA 282 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHHH
Confidence 444443 3444444444444444444433 557999999 899999999999974 677888999999999999
Q ss_pred HHHh
Q 047555 481 AVQG 484 (593)
Q Consensus 481 al~a 484 (593)
|+.+
T Consensus 283 aL~~ 286 (287)
T 2ews_A 283 LYLE 286 (287)
T ss_dssp HHTC
T ss_pred HHhC
Confidence 9874
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0024 Score=65.03 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHcCCCCCCCCeEEEEeC-CCChHhHHHHHHhHhC------CCCCCCCCChhHHHhH
Q 047555 411 EELCSDLLDRLKKPVETA----LRDAKLSFNDLDEVILVGG-STRIPAVQELVKKMTG------KDPNVTVNPDEVVALG 479 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~----l~~~~~~~~~i~~VvLvGG-~s~~p~l~~~l~~~~g------~~v~~~~~p~~aVA~G 479 (593)
++++..++..+.+.|-.. ....+ ++.|+++|| .+..|++++.|++.++ .++..+.+|..+-|+|
T Consensus 279 eDIa~gll~sVa~~I~~lA~l~A~~~~-----i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlG 353 (360)
T 2i7n_A 279 EDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVG 353 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHH
Confidence 444444444444444333 23333 446999999 8999999999999863 5777788999999999
Q ss_pred HHHHh
Q 047555 480 AAVQG 484 (593)
Q Consensus 480 Aal~a 484 (593)
|++.+
T Consensus 354 AaL~~ 358 (360)
T 2i7n_A 354 ALLEL 358 (360)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99975
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.027 Score=56.68 Aligned_cols=77 Identities=16% Similarity=0.252 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHcCCceEEEechhHHHHHHhccc--cC-CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHH
Q 047555 260 QRTATKDAGRIAGLEVLRIINEPTAASLAYGFE--RK-NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDD 336 (593)
Q Consensus 260 ~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~--~~-~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~ 336 (593)
..+.+.++-+..|++.-.+-.|-+|...+.+.. .. .....+|+|+|||+|.+++++-+... ...+.++|...
T Consensus 91 ~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~~~~~-----~~~Sl~lG~vr 165 (315)
T 3mdq_A 91 KQVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNKNEIL-----WKQSFEIGGQR 165 (315)
T ss_dssp HHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECSSCEE-----EEEEESCCHHH
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEECCeEe-----eeEEEechhhH
Confidence 345556666678998855555666654443322 11 24679999999999999998733222 13346889888
Q ss_pred HHHHH
Q 047555 337 FDKRV 341 (593)
Q Consensus 337 id~~l 341 (593)
+.+.+
T Consensus 166 l~e~f 170 (315)
T 3mdq_A 166 LIDRF 170 (315)
T ss_dssp HHHHS
T ss_pred HHHHh
Confidence 77754
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.47 Score=47.85 Aligned_cols=65 Identities=26% Similarity=0.244 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhHHHHHhhhhc
Q 047555 419 DRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 419 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~GAal~a~~l~ 488 (593)
+.+.+.++++.+..+ ++.|+|+||.++...+++.|.+.+ |.++..+. --|.+++.|++.+.....
T Consensus 230 ~~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~ 300 (330)
T 2ivn_A 230 AALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKA 300 (330)
T ss_dssp HHHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHhc
Confidence 334444444444433 568999999999999999999877 55444433 235578888887654433
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0057 Score=61.68 Aligned_cols=77 Identities=17% Similarity=0.116 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHH
Q 047555 260 QRTATKDAGRIAGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDF 337 (593)
Q Consensus 260 ~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~i 337 (593)
..+.+.++-+..|++.-.+-.|.+|...+.+.. .......+|+|+|||+|.+++++ ++.+. ...+..+|+..+
T Consensus 99 ~~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~--~~~~~---~~~Sl~~G~v~l 173 (315)
T 1t6c_A 99 AEEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK--GYKVR---EVISLPIGIVNL 173 (315)
T ss_dssp HHHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEE--TTEEE---EEEEECCCHHHH
T ss_pred HHHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEe--CCcee---eEEEEeccHHHH
Confidence 345556666678998866666777765554322 11356799999999999999986 33321 233478999998
Q ss_pred HHHH
Q 047555 338 DKRV 341 (593)
Q Consensus 338 d~~l 341 (593)
.+.+
T Consensus 174 ~e~~ 177 (315)
T 1t6c_A 174 TETF 177 (315)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8775
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.19 Score=49.91 Aligned_cols=58 Identities=14% Similarity=0.082 Sum_probs=39.7
Q ss_pred cCcEEEEeCCCCCH-HHHHHHHHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCce
Q 047555 245 ITKAVVTVPAYFND-SQRTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGT 308 (593)
Q Consensus 245 ~~~~viTVPa~~~~-~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT 308 (593)
+..+.|++|.. +. .....+.+..+..+ -.+.+.++..|++++-.. ..+++++-+|-|.
T Consensus 60 ~~~igi~~~G~-~~~~~~~~l~~~l~~~~-~pv~v~ND~~aaa~~e~~----~~~~v~l~~GTG~ 118 (299)
T 2e2o_A 60 ADVVGMGVAGL-DSKFDWENFTPLASLIA-PKVIIQHDGVIALFAETL----GEPGVVVIAGTGS 118 (299)
T ss_dssp CSEEEEEETTC-CSHHHHHHHHHHHTTSS-SEEEEEEHHHHHHHHHHT----TSCEEEEEESSSE
T ss_pred CCEEEEEcCCC-CchhHHHHHHHHHHhCC-CCEEEeCcHHHHHhhccC----CCCeEEEEecCCE
Confidence 45789999988 53 33334555544434 356889999999987543 3567788899884
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.29 Score=49.09 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=30.6
Q ss_pred cCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 271 AGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
.|++ +.+.++..|+|++-... .+..++++++-+|.| +-..++.
T Consensus 96 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 96 VGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred hCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEE
Confidence 4776 68999999999875432 223567888888888 5555554
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0052 Score=65.97 Aligned_cols=79 Identities=20% Similarity=0.264 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
++++.+++.+.-.++..++........++.|.++||+++++.+.+.+.+.+|.++.....++.+.|+|||+.|+.-.|.
T Consensus 360 ~~~rAvlEgia~~~~~~~~~l~~~g~~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~lA~~~~g~ 438 (484)
T 2itm_A 360 ELARAVLEGVGYALADGMDVVHACGIKPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTCCCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHHHHHHcCC
Confidence 3455555555554554444432223457889999999999999999999999998877666656899999999875553
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0071 Score=66.09 Aligned_cols=85 Identities=20% Similarity=0.214 Sum_probs=63.4
Q ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHh
Q 047555 405 LTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 405 itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a 484 (593)
-++.++..+++.+++.+.-.++..++........++.|.++||.++++.+.+.+.+.+|.++.+.. ..++.|+|||+.|
T Consensus 409 ~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~~~~~i~~~GG~aks~~~~Qi~ADv~g~pV~~~~-~~e~~alGAA~lA 487 (554)
T 3l0q_A 409 TTPEDMALRYLATIQALALGTRHIIETMNQNGYNIDTMMASGGGTKNPIFVQEHANATGCAMLLPE-ESEAMLLGSAMMG 487 (554)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEEEESGGGGCHHHHHHHHHHHCCEEEEES-CSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCccccCHHHHHHHHHhhCCeEEecC-CCcchHHHHHHHH
Confidence 367777544566666665555555554332334688999999999999999999999999887654 4678999999999
Q ss_pred hhhcCC
Q 047555 485 GVLAGD 490 (593)
Q Consensus 485 ~~l~~~ 490 (593)
+.-.|.
T Consensus 488 ~~a~G~ 493 (554)
T 3l0q_A 488 TVAAGV 493 (554)
T ss_dssp HHHTTS
T ss_pred HHHcCC
Confidence 876654
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.27 E-value=1.1 Score=45.07 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCC---CChhHHHhHHHHHhhhhcC
Q 047555 417 LLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTV---NPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 417 ~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~---~p~~aVA~GAal~a~~l~~ 489 (593)
+.+.+.+.++++++..+ ++.|+|+||.++...+++.|.+.+ |.++..+. --|.+++.|++.+.....+
T Consensus 233 l~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 233 AFAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 44445556666666544 568999999999999999999887 55544433 2467889999876554444
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0083 Score=64.64 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
.++++.+++.+.-.++..++...... .++.|+++||.++++.+.+.+.+.+|.++..... .++.|+|||+.|+.-.|.
T Consensus 367 ~~l~rAvlEgia~~~~~~l~~l~~~~-~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~-~e~~alGaA~lA~~~~g~ 444 (497)
T 2zf5_O 367 EHLARATLEAIAYLTRDVVDEMEKLV-QIKELRVDGGATANDFLMQFQADILNRKVIRPVV-KETTALGAAYLAGLAVDY 444 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTS-CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEESC-SCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CcceEEEeCccccCHHHHHHHHhhcCCeEEEcCC-CcchHHHHHHHHHHHhCc
Confidence 34455666666666666666554333 6788999999999999999999999998875544 558999999999875553
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0099 Score=64.13 Aligned_cols=79 Identities=11% Similarity=0.048 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDV 491 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~ 491 (593)
++++.+++.+.-.++..++........++.|.++||+++++.+.+.+.+.+|.++... .+.++.|+|||+.|+.-.|..
T Consensus 367 ~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G~~ 445 (504)
T 3ll3_A 367 EMARAVIEGIIFNLYDAASNLIKNTKKPVAINATGGFLKSDFVRQLCANIFNVPIVTM-KEQQSGTLAAMFLARQALGLN 445 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCSEEEEESGGGCSHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeCchhcCHHHHHHHHHhhCCeEEec-CCCCchhHHHHHHHHHHcCcc
Confidence 3445555555544444444332222468899999999999999999999999988754 456799999999998765543
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0078 Score=65.05 Aligned_cols=77 Identities=12% Similarity=0.012 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCC-CCCCCChhHHHhHHHHHhhhhcCC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDP-NVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v-~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
++++.+++.+.-.++..++.... .. ++.|.++||+++++.+.+.+.+.+|.++ .. ..+.++.|+|||+.|+.-.|.
T Consensus 378 ~l~RAvlEgia~~~~~~~~~l~~-g~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~~e~~alGaA~lA~~a~G~ 454 (511)
T 3hz6_A 378 QILLAVLEGAALSLRWCAELLGM-EK-VGLLKVVGGGARSEAWLRMIADNLNVSLLVK-PDAHLHPLRGLAALAAVELEW 454 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTG-GG-CCEEEEESGGGGCHHHHHHHHHHHTCEEEEC-CCGGGHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-CC-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEe-cCCCCchHHHHHHHHHHHhCC
Confidence 44555555555555555554433 34 8899999999999999999999999988 54 458889999999999876664
Q ss_pred C
Q 047555 491 V 491 (593)
Q Consensus 491 ~ 491 (593)
.
T Consensus 455 ~ 455 (511)
T 3hz6_A 455 S 455 (511)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.69 Score=46.47 Aligned_cols=44 Identities=18% Similarity=0.369 Sum_probs=30.5
Q ss_pred HcCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 270 IAGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
..|++ +.+.++..|+|++-... .+..++++++-+|-| +-..++.
T Consensus 119 ~~~~p-V~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtG-iG~gii~ 164 (327)
T 4db3_A 119 KIGRS-VKIENDANCFALSEAWDEELQDAPSVMGLILGTG-FGGGLIY 164 (327)
T ss_dssp HHSSC-CEEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSS-EEEEEEE
T ss_pred HHCCC-EEEecchhHHHHHHHHhCCCCCCCcEEEEEeCcc-ceEEEEE
Confidence 34776 68999999999976443 223577888888877 4555544
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.013 Score=63.85 Aligned_cols=78 Identities=8% Similarity=0.075 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
.++++.+++.+.-.++..++........++.|.++||+++++.+.+.+.+.+|.++... .+.++.|+|||+.|+.-.|
T Consensus 407 ~~l~RAvlEgia~~~r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G 484 (538)
T 4bc3_A 407 DVEVRALIEGQFMAKRIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVGSAYRAFHGLA 484 (538)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHHHHHHHHHHhC
Confidence 55566666666666666666655444567889999999999999999999999988654 4577999999999886443
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.01 Score=64.19 Aligned_cols=77 Identities=23% Similarity=0.342 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
++++.+++.+.-.++..++........++.|+++||.++++.+.+.+.+.+|.++... .+.++.|+|||+.|+.-.+
T Consensus 398 ~l~RAvlEgia~~~r~~l~~l~~~g~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a~G 474 (515)
T 3i8b_A 398 NLARAFVEGLLCSQRDCLELIRSLGASITRILLIGGGAKSEAIRTLAPSILGMDVTRP-ATDEYVAIGAARQAAWVLS 474 (515)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCEEEEECchhcCHHHHHHHHHHhCCceEec-CCcccHHHHHHHHHHHHcC
Confidence 3444444444444444333221123457899999999999999999999999988654 4566889999999987554
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0096 Score=64.18 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
++++.+++.+.-.++..++.... ....++.|.++||.++++.+.+.+.+.+|.++... .+.++.|+|||+.|+.-.|.
T Consensus 377 ~l~RAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~la~~a~G~ 455 (501)
T 3g25_A 377 HFIRATLESLCYQTRDVMEAMSKDSGIDVQSLRVDGGAVKNNFIMQFQADIVNTSVERP-EIQETTALGAAFLAGLAVGF 455 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecchhcCHHHHHHHHHHhCCceEec-CCCcchHHHHHHHHHHHhCc
Confidence 34444444444444444433211 12357899999999999999999999999988654 46678999999999876664
Q ss_pred CC
Q 047555 491 VS 492 (593)
Q Consensus 491 ~~ 492 (593)
.+
T Consensus 456 ~~ 457 (501)
T 3g25_A 456 WE 457 (501)
T ss_dssp SS
T ss_pred cC
Confidence 33
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0093 Score=64.40 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=45.3
Q ss_pred CCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 437 NDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
..++.|.++||+++++.+.+.+.+.+|.++..... .++.|+|||+.|+.-.|.
T Consensus 399 ~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~lA~~a~G~ 451 (508)
T 3ifr_A 399 HAPQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAWVAAIGGGD 451 (508)
T ss_dssp CCCCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHHHHHHHTCS
T ss_pred CCCCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHHHHHHHhCC
Confidence 35789999999999999999999999999876655 458899999999876654
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.39 Score=48.05 Aligned_cols=43 Identities=21% Similarity=0.445 Sum_probs=29.9
Q ss_pred cCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 271 AGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
.|++ +.+.++..|+|++-... ....++++++-+|.| +-..++.
T Consensus 108 ~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv~ 152 (326)
T 2qm1_A 108 LGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIVA 152 (326)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEE
T ss_pred hCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEE
Confidence 4665 68999999999875332 123567888889988 5555554
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.82 Score=45.34 Aligned_cols=44 Identities=23% Similarity=0.257 Sum_probs=29.4
Q ss_pred HcCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 270 IAGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
..|++ +.+.|+..|+|++-... ....++++++-+|.| +-..++.
T Consensus 97 ~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~ 142 (302)
T 3vov_A 97 ATGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTG-IGGGVVL 142 (302)
T ss_dssp HHSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEEE
T ss_pred hhCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCc-eeEEEEE
Confidence 34665 68999999999876433 123567888888877 4444443
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.011 Score=64.17 Aligned_cols=56 Identities=23% Similarity=0.261 Sum_probs=47.0
Q ss_pred CCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCCc
Q 047555 437 NDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVSD 493 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~~ 493 (593)
..++.|.++||+++++.+.+.+.+.+|.++.+.. ..++.|+|||+.|+.-.|..++
T Consensus 401 ~~~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~~-~~E~~alGAA~lA~~a~G~~~~ 456 (526)
T 3ezw_A 401 IRLHALRVDGGAVANNFLMQFQSDILGTRVERPE-VREVTALGAAYLAGLAVGFWQN 456 (526)
T ss_dssp CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEEES-CCCHHHHHHHHHHHHHTTSSSC
T ss_pred CCCCEEEEECchhhCHHHHHHHHHHHCCEEEeCC-CCchHHHHHHHHHHHHhCCCCC
Confidence 4578999999999999999999999999887554 4578999999999886664433
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.12 Score=52.58 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHcCCceEEEechhHHHHHHhcc--ccC---CCceEEEEeeCCceEEEEEEEE--cC--CEEEEEEecCCC
Q 047555 260 QRTATKDAGRIAGLEVLRIINEPTAASLAYGF--ERK---NNETILVFDLGGGTFDVSVLEV--GD--GVFEVLSTSGDT 330 (593)
Q Consensus 260 ~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~--~~~---~~~~vlVvD~GggT~Dvsv~~~--~~--~~~~vl~~~~~~ 330 (593)
..+.+.++-+..|++.-.+--|-+|...+.+. ... ....++|+|+|||+|+++++.- .+ +.+ ......
T Consensus 104 ~~~fl~~v~~~tGi~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~---~~~~Sl 180 (343)
T 3cer_A 104 REEFEDEIERILGVRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQV---QGAFSM 180 (343)
T ss_dssp HHHHHHHHHHHHSSCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSC---SEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCccccc---ceeEEE
Confidence 34556666667799874444455554333332 111 2356999999999999999865 22 100 013346
Q ss_pred CccHHHHHHHH
Q 047555 331 HLGGDDFDKRV 341 (593)
Q Consensus 331 ~lGG~~id~~l 341 (593)
++|+..+.+.+
T Consensus 181 plG~v~lt~~~ 191 (343)
T 3cer_A 181 NIGSVRMTERH 191 (343)
T ss_dssp SCCHHHHHHHT
T ss_pred ehhHHHHHHHh
Confidence 89999988776
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=95.60 E-value=0.013 Score=63.31 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=45.5
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDV 491 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~ 491 (593)
.++.|.++||+++++.+.+.+.+.+|.++.+. .+.++.|+|||+.|+.-.|..
T Consensus 403 ~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~G~~ 455 (506)
T 3h3n_X 403 DIPLLKVDGGAAKNDLLMQFQADILDIDVQRA-ANLETTALGAAYLAGLAVGFW 455 (506)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHHHHHTTSS
T ss_pred CCCEEEEecccccCHHHHHHHHHHhCCeEEec-CCCcchhHHHHHHHHHHhCcc
Confidence 57889999999999999999999999988654 466799999999998766643
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.011 Score=63.87 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=44.6
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCCCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGDVS 492 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~~~ 492 (593)
.++.|.++||.++++.+.+.+.+.+|.++... .+.++.|+|||+.|+.-.|..+
T Consensus 425 ~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a~G~~~ 478 (520)
T 4e1j_A 425 NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRP-VILETTALGVAWLAGSRAGVWP 478 (520)
T ss_dssp --CCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCCCHHHHHHHHHHHHHHTSSC
T ss_pred CcceEEEeCccccCHHHHHHHHHHhCCeEEec-CCCccHHHHHHHHHHHHcCCcC
Confidence 47789999999999999999999999988754 4567899999999987666433
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.02 Score=61.65 Aligned_cols=77 Identities=23% Similarity=0.219 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcC
Q 047555 412 ELCSDLLDRLKKPVETALRDAKL-SFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAG 489 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~-~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~ 489 (593)
++++.+++.+.-.++..++.... ....++.|+++||.++++.+.+.+.+.+|.++.... +.++.|+|||+.|+.-.|
T Consensus 371 ~~~rAvlEgia~~~~~~~~~l~~~~g~~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~~-~~e~~alGaA~la~~a~G 448 (495)
T 2dpn_A 371 HLARAALEGVAFQVRDVVLAMEEEAGVRLKVLKADGGMAQNRLFLKIQADLLGVPVAVPE-VTETTALGAALMAGVGAG 448 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSCCCCCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecccccCHHHHHHHHHHhCCeeEecC-CcccHHHHHHHHHHhhcC
Confidence 34445555555555555544321 224567899999999999999999999999887544 456899999999887555
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.35 Score=48.57 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=30.9
Q ss_pred HHc-CCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 269 RIA-GLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 269 ~~A-Gl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
+.. |++ +.+.++..|+|++-... ....++++++-+|.| +-..++.
T Consensus 115 ~~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii~ 162 (321)
T 3r8e_A 115 SEFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVMM 162 (321)
T ss_dssp HHCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred HHcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEEE
Confidence 345 665 68999999999875432 233567888888888 5555554
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.12 Score=55.57 Aligned_cols=76 Identities=20% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHH
Q 047555 261 RTATKDAGRIAGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338 (593)
Q Consensus 261 r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id 338 (593)
.+.+.++-+..|++.-.+--|-+|...+.+.. ....+..+|+|+|||+|.+++.+ ++... ...+.++|...+.
T Consensus 99 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~lviDIGGGStEl~~~~--~~~~~---~~~Sl~lG~vrlt 173 (513)
T 1u6z_A 99 TDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE--NFEPI---LVESRRMGCVSFA 173 (513)
T ss_dssp HHHHHHHTTTCSSCEEECCHHHHHHHHHHHHHHHSCCCSCEEEEEECSSCEEEEEEE--TTEEE---EEEEESCCHHHHH
T ss_pred HHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhccCCCCEEEEEECCCcEEEEEEe--CCeee---EEEEEeccHHHHH
Confidence 34555555567988744444545544433322 22223699999999999999875 33321 1334789999888
Q ss_pred HHH
Q 047555 339 KRV 341 (593)
Q Consensus 339 ~~l 341 (593)
+.|
T Consensus 174 e~f 176 (513)
T 1u6z_A 174 QLY 176 (513)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=2.4 Score=42.54 Aligned_cols=61 Identities=10% Similarity=-0.003 Sum_probs=42.3
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHHHc-C--CceEEEechhHHHHHHhccccCCCceEEEEeeCCceE
Q 047555 244 KITKAVVTVPAYFNDSQRTATKDAGRIA-G--LEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTF 309 (593)
Q Consensus 244 ~~~~~viTVPa~~~~~~r~~l~~Aa~~A-G--l~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~ 309 (593)
.+..+.|++|...+......+++..+.. + ...+.+.++..|+++++ . +...+++=+|-|.-
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~----~~~~v~v~~GTGig 133 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-T----PDGGVVLISGTGSN 133 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-C----SSCEEEEEESSSEE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-C----CCCcEEEEEcCCce
Confidence 4667899999988876666666665543 4 14578999999999984 2 23455666666543
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=95.28 E-value=0.02 Score=61.67 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=43.9
Q ss_pred CC-CeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 438 DL-DEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 438 ~i-~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
.+ +.|+++||.++++.+.+.+.+.+|.++... .+.++.|+|||+.|+.-.|.
T Consensus 406 ~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~-~~~e~~alGaA~la~~~~G~ 458 (503)
T 2w40_A 406 EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVS-KYKEVTSLGAAVLAGLEVKI 458 (503)
T ss_dssp SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHTTC
T ss_pred CccceEEEeCccccCHHHHHHHHHHHCCeEEec-CCCcchHHHHHHHHHHHhCc
Confidence 36 779999999999999999999999988754 44568999999999875553
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.023 Score=61.28 Aligned_cols=52 Identities=29% Similarity=0.333 Sum_probs=44.6
Q ss_pred CCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 438 DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 438 ~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
.++.|.++||.++++.+.+.+.+.+|.++... .+.++.|+|||+.|+.-.|.
T Consensus 403 ~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~~~~G~ 454 (504)
T 2d4w_A 403 DLTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYAAGIAVGF 454 (504)
T ss_dssp CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHHTS
T ss_pred CcceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHHHHhhcCc
Confidence 46889999999999999999999999988754 45668999999999876553
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.95 Score=44.47 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=30.6
Q ss_pred HHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEE
Q 047555 269 RIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 269 ~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
+..|++ +.+.++..|+|++-.......++++++-+|.| +-..++.
T Consensus 92 ~~~~~p-v~v~NDa~aaa~~e~~~~~~~~~~v~l~~GtG-iG~giv~ 136 (292)
T 2gup_A 92 SSYQLP-VHLENDANCVGLSELLAHPELENAACVVIGTG-IGGAMII 136 (292)
T ss_dssp GGGCCC-EEEEEHHHHHHHHHHHHCTTCSSEEEEEESSS-EEEEEEE
T ss_pred HHcCCC-EEEechHHHHHHHHHHhcCCCCeEEEEEECCc-eEEEEEE
Confidence 345665 68999999999876542233567888888887 4455443
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.98 E-value=3.6 Score=42.06 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCCh-HhHHHHHHhHhCC--------CCCCCCCChhHHHhHHH
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRI-PAVQELVKKMTGK--------DPNVTVNPDEVVALGAA 481 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~-p~l~~~l~~~~g~--------~v~~~~~p~~aVA~GAa 481 (593)
.++++...+.+...+..++.-. +++.|+|.||.+.. +.+.+.+++.+.. ++........+.++||+
T Consensus 292 ~~~l~~~~~~La~~i~~l~~~l-----dP~~IvlgG~~~~~~~~l~~~l~~~l~~~~~~~~~~~i~~s~~~~~a~~~GAa 366 (380)
T 2hoe_A 292 KEYFDDIARYFSIGLLNLIHLF-----GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGAA 366 (380)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-----CCCEEEEcCchhhhhHHHHHHHHHHHHHhcCCCCCcEEEEcCCCCcHHHHHHH
Confidence 3444444444444454444443 35679999998764 6676766665521 11222334567899999
Q ss_pred HHhh
Q 047555 482 VQGG 485 (593)
Q Consensus 482 l~a~ 485 (593)
.++.
T Consensus 367 ~l~~ 370 (380)
T 2hoe_A 367 VHAL 370 (380)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.84 E-value=2 Score=42.92 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=29.3
Q ss_pred cCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 271 AGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
.+++ +.+.++..|+|++-... .+..++++++-+|-| +-..++.
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv~ 164 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLVL 164 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEEE
Confidence 4665 78999999999875332 123567888888887 4455443
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.037 Score=59.34 Aligned_cols=48 Identities=19% Similarity=0.218 Sum_probs=40.1
Q ss_pred CCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 437 NDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
..++.|.++||+++++.+.+.+.+.+|.++.... .++.|.||++.|..
T Consensus 392 ~~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa~~A~~ 439 (489)
T 2uyt_A 392 EDFSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNIGIQLM 439 (489)
T ss_dssp CCCSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHHHHHHH
T ss_pred CCCCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHHHHHHH
Confidence 3478899999999999999999999999886443 58899999665543
|
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=94.20 E-value=4.7 Score=39.71 Aligned_cols=64 Identities=19% Similarity=0.073 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCC--hHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 414 CSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTR--IPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 414 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~--~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
...++++..+.+-..+...-.. ++..|+|.||.+. .+++.+.+++.+ . .|+.+.+.||++++..
T Consensus 228 A~~i~~~~~~~L~~~l~~l~~~--~p~~VvlgGgv~~~~~~~l~~~l~~~i----~---~~~~~~~~GAa~la~~ 293 (305)
T 1zc6_A 228 ADALLRQAGEDAWAIARALDPQ--DELPVALCGGLGQALRDWLPPGFRQRL----V---APQGDSAQGALLLLQR 293 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT--CCSCEEEESHHHHHTGGGSCHHHHHHC----C---CCSSCHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCeEEEECCchHhHHHHHHHHHHhhc----c---CCCCCHHHHHHHHHhh
Confidence 4445555555555555544322 6778999998864 567777777753 1 2567779999998753
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=94.03 E-value=2 Score=44.46 Aligned_cols=43 Identities=12% Similarity=0.220 Sum_probs=29.7
Q ss_pred cCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 271 AGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
.|++ +.+.++..|+|++-... ....++++++-+|.| +-..++.
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~ 230 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVIT 230 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEEE
Confidence 4665 68999999999875432 123567888888887 4555553
|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=93.84 E-value=1.5 Score=43.14 Aligned_cols=61 Identities=11% Similarity=0.072 Sum_probs=37.4
Q ss_pred CcCcEEEEeCCCCCHHHHHHHHHHHH-HcCC-ceEEEechhHHHHHHhccccCCCceEEEEeeCCceE
Q 047555 244 KITKAVVTVPAYFNDSQRTATKDAGR-IAGL-EVLRIINEPTAASLAYGFERKNNETILVFDLGGGTF 309 (593)
Q Consensus 244 ~~~~~viTVPa~~~~~~r~~l~~Aa~-~AGl-~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~ 309 (593)
.+..+.|++|..- ......+++.++ ..++ ..+.+.+...+|+++-. .....+++=+|-|.-
T Consensus 59 ~i~~igig~pG~~-~~~~~~l~~~l~~~~~~~~pv~v~NDa~~aa~ge~----g~~~~v~v~~GTGig 121 (291)
T 1zbs_A 59 SIRAVYFYGAGCT-PAKAPMLNEALDSMLPHCDRIEVAGDMLGAARALC----GDSEGIACILGTGSN 121 (291)
T ss_dssp TCCEEEEEETTCC-TTTHHHHHHHHHHHSTTCSEEEEECHHHHHHHHHT----TTSCEEEEEESSSEE
T ss_pred cccEEEEECCCCC-hHHHHHHHHHHHHhcCCCCcEEEeCcHHHHHHhhc----CCCCcEEEEecCChh
Confidence 3556889999764 222234555444 3455 47899999999998752 223444455676653
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=93.67 E-value=9 Score=41.13 Aligned_cols=183 Identities=19% Similarity=0.212 Sum_probs=91.6
Q ss_pred CcCcEEEEe-CCCCCHHHHHHH---HHHHHHcCCceEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEcCC
Q 047555 244 KITKAVVTV-PAYFNDSQRTAT---KDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDG 319 (593)
Q Consensus 244 ~~~~~viTV-Pa~~~~~~r~~l---~~Aa~~AGl~~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~~~ 319 (593)
.++.+++|. |..++.- |--+ +..+...|++.+. |+.-+|=+++.......... +++-+.||++.+..+. ++
T Consensus 72 ~id~ia~~~gPG~~~~l-~vg~~~ak~la~~~~~p~~~-v~h~~aH~~~~~~~~~~~~p-~~l~vsGg~t~~~~~~--~~ 146 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSL-RVTATVARTLSLTLKKPIIG-VNHCIAHIEIGKLTTEAEDP-LTLYVSGGNTQVIAYV--SK 146 (540)
T ss_dssp GCCEEEEEEESSCHHHH-HHHHHHHHHHHHHHTCCEEE-EEHHHHHHHHHHHHSSCSSC-EEEEECSSCEEEEEEE--TT
T ss_pred HCcEEEEecCCCchhhH-HHHHHHHHHHHHHhCCCeeE-eccHHHHHHHHHHhcCCCCC-cEEEEcCCCcEEEEEe--CC
Confidence 455666665 6655433 2222 2234445666544 55555544443333222222 6666777888775554 57
Q ss_pred EEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhcCCCceeeEEeccccccCCCCc
Q 047555 320 VFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPK 399 (593)
Q Consensus 320 ~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~ 399 (593)
.++++....+..+ |+.||.. ...+ +.... ... .+...|.+.+. .+.+|..... .
T Consensus 147 ~~~~lg~t~d~s~-G~~~D~~-----a~~l----gl~~~-gg~---~ie~lA~~g~~--------~~~~p~~~~~----~ 200 (540)
T 3en9_A 147 KYRVFGETLDIAV-GNCLDQF-----ARYV----NLPHP-GGP---YIEELARKGKK--------LVDLPYTVKG----M 200 (540)
T ss_dssp EEEEEEEBSSSCH-HHHHHHH-----HHHT----TCCSS-CHH---HHHHHHHTCCC--------CCCCCCCEET----T
T ss_pred ceEEEeeccchHh-HHHHHHH-----HHHc----CCCCC-CHH---HHHHHHHcCCc--------cCcCCCCCCC----c
Confidence 8999988775544 5666642 2222 22211 111 22223322211 0111111000 0
Q ss_pred eeEE-------------EecHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh
Q 047555 400 HIET-------------TLTRAKFEELCSD-LLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT 462 (593)
Q Consensus 400 ~~~~-------------~itr~~~e~~~~~-~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~ 462 (593)
++++ ..+..++...|+. +++.+.+.+.++++..+ ++.|+|+||-+....|++.+++.+
T Consensus 201 ~~sfsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~~~ 272 (540)
T 3en9_A 201 DIAFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKAMC 272 (540)
T ss_dssp EECCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHHHH
T ss_pred ceecHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHHHH
Confidence 1100 0112333322222 34445555666666654 568999999999999999999977
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=93.18 E-value=3.2 Score=39.86 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=17.5
Q ss_pred eEEEEEcCccceEEEEEECC
Q 047555 113 KVVGIDLGTTNSAVAAMEGG 132 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g 132 (593)
..++||+|+|+++.++++++
T Consensus 4 M~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 4 MYLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEEECSSEEEEEEESSS
T ss_pred eEEEEEECCCeEEEEEEECC
Confidence 47999999999999998754
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.17 E-value=3.1 Score=43.34 Aligned_cols=43 Identities=16% Similarity=0.294 Sum_probs=29.6
Q ss_pred cCCceEEEechhHHHHHHhccc--cCCCceEEEEeeCCceEEEEEEE
Q 047555 271 AGLEVLRIINEPTAASLAYGFE--RKNNETILVFDLGGGTFDVSVLE 315 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~--~~~~~~vlVvD~GggT~Dvsv~~ 315 (593)
.|++ +.+.++..|+|++-... ....++++++-+|.| +-..++.
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv~ 252 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIVL 252 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEEE
Confidence 4765 68999999999875432 123567888888887 4455553
|
| >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=8.4 Score=38.40 Aligned_cols=48 Identities=31% Similarity=0.363 Sum_probs=32.8
Q ss_pred HHHcCCceEEEechhHHHHHHhccc------------cCCCceEEEEeeCCceEEEEEEEE
Q 047555 268 GRIAGLEVLRIINEPTAASLAYGFE------------RKNNETILVFDLGGGTFDVSVLEV 316 (593)
Q Consensus 268 a~~AGl~~v~li~Ep~AAal~~~~~------------~~~~~~vlVvD~GggT~Dvsv~~~ 316 (593)
.+..|++.+.+.|+..|+|++-... .+..++++++-+|-|- -..++.-
T Consensus 98 ~~~~~~p~V~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~~~~~v~~GTGi-G~giv~~ 157 (332)
T 1sz2_A 98 KKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGL-GVAHLVH 157 (332)
T ss_dssp HHHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSSE-EEEEEEE
T ss_pred HHHhCCCcEEEEeCHhHHhccccccChhhheecCCCCCCCCCcEEEEEcCccc-eEEEEec
Confidence 3445888789999999999976432 1234678888888873 4444443
|
| >3ven_A O-carbamoyltransferase TOBZ; antibiotic biosynthesis, substrate assisted catalysis, subst channeling, adenylation; HET: TLA; 1.57A {Streptoalloteichus tenebrarius} PDB: 3veo_A 3ves_A* 3vet_A* 3vew_A* 3ver_A* 3vf4_A* 3vf2_A* 3vex_A* 3vez_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=1.7 Score=46.85 Aligned_cols=79 Identities=18% Similarity=0.127 Sum_probs=53.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-CCCCC-CCChhHHHhHHHHH
Q 047555 407 RAKFEELCSDL-LDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-DPNVT-VNPDEVVALGAAVQ 483 (593)
Q Consensus 407 r~~~e~~~~~~-~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-~v~~~-~~p~~aVA~GAal~ 483 (593)
..++...++.. .+-+.+.+..+.+..+ ++.|+|.||.+....+.+.|.+..+. .+..+ .--|.++++|+|.+
T Consensus 280 ~~dIAasfQ~~l~~~L~~~~~~a~~~tg-----~~~l~LaGGVa~N~~L~~~l~~~~~~~~v~vpp~~~D~G~aiGqA~~ 354 (576)
T 3ven_A 280 YRDLAATAQAALERAVFGLADSVLARTG-----ERTLFVAGGVGLNATMNGKLLTRSTVDKMFVPPVASDIGVSLGAAAA 354 (576)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHTSTTCSEEECCTTCSGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCeEEecchHHHHHHHHHHHHHhcCCCeEEeCCCCCchHHHHHHHHH
Confidence 44555555443 3344555555555544 67899999999999999999877653 22222 24478899999999
Q ss_pred hhhhcCC
Q 047555 484 GGVLAGD 490 (593)
Q Consensus 484 a~~l~~~ 490 (593)
+....|.
T Consensus 355 a~~~~g~ 361 (576)
T 3ven_A 355 VAVELGD 361 (576)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8766553
|
| >3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} | Back alignment and structure |
|---|
Probab=91.62 E-value=9.8 Score=41.47 Aligned_cols=57 Identities=21% Similarity=0.353 Sum_probs=45.9
Q ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHH
Q 047555 402 ETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVK 459 (593)
Q Consensus 402 ~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~ 459 (593)
.+.||..+++++.. .-..+..-++-+|+++++...+|+.|+|.||++..=-+.+.+.
T Consensus 499 ~i~itq~DIr~~ql-AKaAi~agi~~Ll~~~gi~~~di~~v~lAGaFG~~l~~~~a~~ 555 (631)
T 3zyy_X 499 DIVITEADIQNLIR-AKAAIFAGVRTMLAMVDLPLEAIDRVIIAGGFGKYLNIKDAIT 555 (631)
T ss_dssp CEEEEHHHHHHHHH-HHHHHHHHHHHHHHHTTCCGGGCCEEEEESSSCSEEEHHHHHH
T ss_pred cEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeccccccCCHHHHhh
Confidence 48999999997654 3445677788889999999999999999999998666666554
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.21 Score=53.34 Aligned_cols=72 Identities=10% Similarity=-0.044 Sum_probs=54.7
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhH-hCCCCCCCCCChhHHHhHHHHHhhhh
Q 047555 411 EELCSDLLDR--LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM-TGKDPNVTVNPDEVVALGAAVQGGVL 487 (593)
Q Consensus 411 e~~~~~~~~~--i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~-~g~~v~~~~~p~~aVA~GAal~a~~l 487 (593)
..+.+.+++. +.=.++..++.... .+.|.++||+++++.+.+.+.+. +|.++.+... .++.|+|||+.|+.-
T Consensus 362 ~~l~RA~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Qi~ADv~~g~pV~~~~~-~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 362 DWFERRAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVRALASLRPDCAVYTANA-HNDVSFGALRLIDPG 436 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHHHHHHHSTTSEEEEESS-CCCTTGGGHHHHCTT
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHHHHhhhcCCCeEEEcCC-CchHHHHHHHHhCcc
Confidence 4566666663 55555666665432 26899999999999999999999 9998876654 457899999998863
|
| >3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A | Back alignment and structure |
|---|
Probab=90.12 E-value=0.38 Score=48.08 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=25.9
Q ss_pred EechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEEc
Q 047555 278 IINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVG 317 (593)
Q Consensus 278 li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~~ 317 (593)
...-|.|.|...... .....+++|+|+.|||+..+.-+
T Consensus 110 aaanw~ASa~~~A~~--~~~~~llvDIGsTTTDIipi~~G 147 (334)
T 3cet_A 110 SASNWCGTAKWVSKN--IEENCILVDMGSTTTDIIPIVEG 147 (334)
T ss_dssp BCCSSHHHHHHHHHH--TCSSEEEEEECSSCEEEEEEETT
T ss_pred HhcCHHHHHHHHHHh--cCCCEEEEEcCcchhhhhhhcCC
Confidence 345676777633222 11357999999999999988733
|
| >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.02 E-value=1.7 Score=46.57 Aligned_cols=76 Identities=22% Similarity=0.254 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHcCCceEEEechhHHHHHHhcccc-CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHH
Q 047555 260 QRTATKDAGRIAGLEVLRIINEPTAASLAYGFER-KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFD 338 (593)
Q Consensus 260 ~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~~-~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id 338 (593)
..+.+.++-+..|++.-.+--|-+|...+.+... -.....+|+|+|||+|.+++++- +.+ ....+.++|...+.
T Consensus 102 ~~~fl~~i~~~tG~~ievIsG~EEA~l~~~gv~~~~~~~~~lvvDIGGGStEl~~~~~--~~~---~~~~Sl~lG~vrl~ 176 (508)
T 3hi0_A 102 GPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKD--KSC---GEGITLPLGGLRLS 176 (508)
T ss_dssp HHHHHHHHHHHHTSCEEECCHHHHHHHHHHHHHHHSSSCEEEEEEECSSCEEEEEEET--TEE---CCCEEESCCHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEecHHHHHHHHHHHHHhcCCCCCeEEEEeCCCceEEEEeeC--Cee---eeEEEecceEEehh
Confidence 4556666666789987544445555544443321 11234599999999999999873 221 12334688988887
Q ss_pred HH
Q 047555 339 KR 340 (593)
Q Consensus 339 ~~ 340 (593)
+.
T Consensus 177 e~ 178 (508)
T 3hi0_A 177 EQ 178 (508)
T ss_dssp HH
T ss_pred hc
Confidence 64
|
| >3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X* | Back alignment and structure |
|---|
Probab=82.51 E-value=11 Score=39.80 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCc--eEEEechhHHHHHHhccccCCCceEEEEeeCCceEEEEEEEE
Q 047555 258 DSQRTATKDAGRIAGLE--VLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEV 316 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~--~v~li~Ep~AAal~~~~~~~~~~~vlVvD~GggT~Dvsv~~~ 316 (593)
..-.+.++++.++-|++ ++.++|...|++++..+.. .+.++-+=+|-|+=-+.+.+.
T Consensus 185 ~dv~~~L~~al~r~gl~v~v~aivNDtv~tll~~~y~~--~~~~iglIlGTG~N~~y~e~~ 243 (485)
T 3o8m_A 185 HDVVPMLQEQIEKLNIPINVVALINDTTGTLVASLYTD--PQTKMGIIIGTGVNGAYYDVV 243 (485)
T ss_dssp SBHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHC--TTEEEEEEESSSEEEEEEEEG
T ss_pred ccHHHHHHHHHHhcCCCceEEEEEEcHHHHHHHHhhCC--CCcEEEEEEecCcceEEEeec
Confidence 55688899999888885 4789999999999876653 455666667777655555543
|
| >4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=80.43 E-value=4.6 Score=45.40 Aligned_cols=61 Identities=25% Similarity=0.414 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHh---CCCCCCCCC---ChhHHHhHHHHHhhh
Q 047555 421 LKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMT---GKDPNVTVN---PDEVVALGAAVQGGV 486 (593)
Q Consensus 421 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~---g~~v~~~~~---p~~aVA~GAal~a~~ 486 (593)
+.+.+.++.++. .++.|+|+||.+....|.+.|.+.+ |.++..+.. -|..+|.|.|++|+.
T Consensus 693 L~~~~~~a~~~t-----g~~~VvLSGGVa~N~~L~~~l~~~L~~~G~~v~~p~~vP~nDgGiALGQA~iA~~ 759 (772)
T 4g9i_A 693 FAHTAVERAREF-----GVKNVALSGGVAYNELITKMIRKVVEANGLNFHVTTEVPRGDNGVNVGQAFLGGL 759 (772)
T ss_dssp HHHHHHHHHHTT-----TCSCCCEESSTTCCHHHHHHHHHHGGGSSCCCCCCTTSCSSGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CcCEEEEEchHHHHHHHHHHHHHHHHHCCCEEEccCCCCCCcchHHHHHHHHHHH
Confidence 344444444443 3677999999999999999999887 455554432 378899999988764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 593 | ||||
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 6e-86 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 2e-74 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 2e-73 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 6e-69 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 4e-47 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 1e-41 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 1e-35 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 2e-32 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 3e-31 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 3e-30 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 2e-20 | |
| d1huxa_ | 259 | c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase comp | 3e-04 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 0.001 | |
| d2fcja1 | 114 | c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 | 0.004 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 263 bits (674), Expect = 6e-86
Identities = 114/196 (58%), Positives = 152/196 (77%), Gaps = 4/196 (2%)
Query: 296 NETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
N TI V+DLGGGTFD+S++E+ G+ FEVL+T+GDTHLGG+DFD R++++L E FK+
Sbjct: 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKK 61
Query: 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411
D+G+ L ND A+QRL EAAEKAK+ELSS Q +++LP+ITA A GPKH+ +TRAK E
Sbjct: 62 DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVN 471
L DL++R + ++ AL+DA LS +D+D+VILVGG TR+P VQ+ V + GK+P VN
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 472 PDEVVALGAAVQGGVL 487
PDE VA+GAAVQGGVL
Sbjct: 182 PDEAVAIGAAVQGGVL 197
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 233 bits (596), Expect = 2e-74
Identities = 97/193 (50%), Positives = 133/193 (68%), Gaps = 5/193 (2%)
Query: 297 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVV 356
+L+FDLGGGTFDVS+L + DG+FEV ST+GDTHLGG+DFD R+V+ FKR
Sbjct: 5 RNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKD 64
Query: 357 LLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSD 416
+ +K+A++RL A E+AK LSS TQA+I + + D T++TRA+FEEL +D
Sbjct: 65 ISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGID----FYTSITRARFEELNAD 120
Query: 417 LLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKM-TGKDPNVTVNPDEV 475
L PVE ALRDAKL + + +++LVGGSTRIP +Q+L++ GK+ N ++NPDE
Sbjct: 121 LFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEA 180
Query: 476 VALGAAVQGGVLA 488
VA GAAVQ +L+
Sbjct: 181 VAYGAAVQAAILS 193
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 231 bits (589), Expect = 2e-73
Identities = 101/184 (54%), Positives = 139/184 (75%), Gaps = 4/184 (2%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
K++GIDLGTTNS VA M+G P ++ NAEG RTTPS++AYT+ G+ LVGQ AKRQAV NP
Sbjct: 1 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 173 ENTFFSVKRFIGRKMS--EVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 230
+NT F++KR IGR+ EV + + ++++ +NG+ ++ G++ A +ISA+VL
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVL 118
Query: 231 RKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290
+K+ A +L + +T+AV+TVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA+LAYG
Sbjct: 119 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 178
Query: 291 FERK 294
++
Sbjct: 179 LDKG 182
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 219 bits (558), Expect = 6e-69
Identities = 94/185 (50%), Positives = 119/185 (64%), Gaps = 4/185 (2%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNP 172
VGIDLG+T S V + GK I+ N +G RTTPS VA+T +RL+G AK Q +NP
Sbjct: 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNP 60
Query: 173 ENTFFSVKRFIGRKMSE--VDDESKQVSYRVVRDEN-GNVKLDCPAIGKQFAAEEISAQV 229
NT F KR IGR+ + V + K + VV D V+++ K F EE+S+ V
Sbjct: 61 TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMV 120
Query: 230 LRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289
L K+ + A +L +T AVVTVPAYFNDSQR ATKDAG IAGL VLRIINEPTAA++AY
Sbjct: 121 LTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 180
Query: 290 GFERK 294
G ++K
Sbjct: 181 GLDKK 185
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 160 bits (406), Expect = 4e-47
Identities = 66/106 (62%), Positives = 82/106 (77%)
Query: 488 AGDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQ 547
+ +V D++LLDVTPLS+G+ET GGVMT +I RNTT+PT +++ F+T D Q V I V +
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 548 GEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
GER +DN LG F L GIPPAPRGVPQIEV FDIDANGIL+V+A
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSA 106
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 144 bits (364), Expect = 1e-41
Identities = 69/100 (69%), Positives = 85/100 (85%)
Query: 494 IVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFV 553
++LLDVTPLS+G+ET+GGVMT +I +NTT+PT S+VFSTA D Q++V I+VLQGER+
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 554 RDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
DNKSLG F LDGI PAPRG+PQIEV FDIDA+GIL V+A
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSA 100
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 127 bits (321), Expect = 1e-35
Identities = 54/97 (55%), Positives = 75/97 (77%)
Query: 497 LDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDN 556
+DV PLS+GLET+GG++ K+IPRNTT+P ++++ F+T DGQT++ I+V+QGERE V+D
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 557 KSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVTA 593
+SL F L GIP P G I V F +DA+G+LSVTA
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTA 97
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 121 bits (304), Expect = 2e-32
Identities = 34/186 (18%), Positives = 71/186 (38%), Gaps = 17/186 (9%)
Query: 299 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLL 358
+V D+GGGT +V+V+ +G V + GD+ D+ +V ++ E ++ G
Sbjct: 9 NMVVDIGGGTTEVAVISLGSIVT-----WESIRIAGDEMDEAIVQYVRETYRVAIGERTA 63
Query: 359 NDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLL 418
+ +++ ++++ ++ + TL + E ++
Sbjct: 64 ERVKIEIGNVFPSKENDELETTVSGIDL---------STGLPRKLTLKGGEVREALRSVV 114
Query: 419 DRLKKPVETALRDAKLSFN---DLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEV 475
+ + V T L + L GG + + + L++K TG + P
Sbjct: 115 VAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTA 174
Query: 476 VALGAA 481
VA GA
Sbjct: 175 VAKGAG 180
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 117 bits (293), Expect = 3e-31
Identities = 30/196 (15%), Positives = 63/196 (32%), Gaps = 38/196 (19%)
Query: 292 ERKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
E +++L+ DLGG T D+S + + + GD+ LG V D L+ +
Sbjct: 2 ELDELDSLLIIDLGGTTLDISQVM--GKLSGISKIYGDSSLGVSLVTSAVKDALSLARTK 59
Query: 352 DEGVVLLNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE 411
I +++ +
Sbjct: 60 GSS-------------------------------YLADDIIIHRKDNNYLKQRINDENKI 88
Query: 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPN---V 468
+ ++ ++ + +E + + F+ V+++GG + + + VKK T
Sbjct: 89 SIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFK 146
Query: 469 TVNPDEVVALGAAVQG 484
T N + G + G
Sbjct: 147 TNNSQYDLVNGMYLIG 162
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 113 bits (283), Expect = 3e-30
Identities = 40/176 (22%), Positives = 67/176 (38%), Gaps = 43/176 (24%)
Query: 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAY-TKIGDRLVGQIAKRQAVVN 171
K +GIDLGT N+ V G IV N PSV+A + G+ L + + +
Sbjct: 1 KDIGIDLGTANTLVFLRGKG---IVVN------EPSVIAIDSTTGEILKVGLEAKNMIGK 51
Query: 172 PENTFFSVKRFIGRKMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLR 231
T +++ +++ ++ +LR
Sbjct: 52 TPATIKAIRPMRDGVIAD---------------------------------YTVALVMLR 78
Query: 232 KLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASL 287
++ A +N + V+ VP D +R A DAG AG + +I EP AA++
Sbjct: 79 YFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI 134
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 86.3 bits (213), Expect = 2e-20
Identities = 20/184 (10%), Positives = 52/184 (28%), Gaps = 39/184 (21%)
Query: 298 TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVL 357
+V D+G T DV + + D V+ S +G D + +
Sbjct: 7 YGVVIDVGSRTTDVLTINLMDMEP-VVELSFSLQIGVGDAISALSRKI------------ 53
Query: 358 LNDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDL 417
+ + ++ E+L + +
Sbjct: 54 ---------------AKETGFVVPFDLAQEALSHPVMFRQKQVGGPEVSGPILEDLANRI 98
Query: 418 LDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTV--NPDEV 475
++ ++ + + + + +I VGG + + + + +++ +
Sbjct: 99 IENIRLNLRGEV-------DRVTSLIPVGGGSNL--IGDRFEEIAPGTLVKIKPEDLQFA 149
Query: 476 VALG 479
ALG
Sbjct: 150 NALG 153
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Score = 40.6 bits (94), Expect = 3e-04
Identities = 36/283 (12%), Positives = 83/283 (29%), Gaps = 51/283 (18%)
Query: 201 VVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQ 260
++ + + ++ A+ + +++++A D
Sbjct: 17 IILKDGKEIVAK--SLVAVGTGTSGPARSISEVLENAHMKKEDMAFTLATGYG------- 67
Query: 261 RTATKDAGRIAGLEVLRIINEPTAASLAYGFERKNNETILVFDLGGGTFDVSVLEVGDGV 320
+ ++E + A G V D+GG V +E G
Sbjct: 68 -------RNSLEGIADKQMSELSCH--AMGASFIWPNVHTVIDIGGQDVKVIHVENGTMT 118
Query: 321 FEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAK--MEL 378
++ G R +D +A + + L E K+ + +
Sbjct: 119 NFQMNDKCAAGTG------RFLDVMANILEVK-----------VSDLAELGAKSTKRVAI 161
Query: 379 SSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFND 438
SS I+ + G I+ + + S ++ +
Sbjct: 162 SSTCTVFAESEVISQLSKGTDKID--IIAGIHRSVASRVIGLANR------------VGI 207
Query: 439 LDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAA 481
+ +V++ GG + V+ +++ G + + ALGAA
Sbjct: 208 VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAA 250
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 38.3 bits (88), Expect = 0.001
Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 19/181 (10%)
Query: 299 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLL 358
++V +LG + + G + +G + +D VL
Sbjct: 9 VVVVNLGYNFTGLIAYKNGVPIK-----ISYVPVGMK------------HVIKDVSAVLD 51
Query: 359 NDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLL 418
+ +RL A + + + A+ E+ S
Sbjct: 52 TSFEESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSK 111
Query: 419 DRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVAL 478
++ + + ++ V+L GG +IP + EL ++ +
Sbjct: 112 KFFREVEAKIVEEGEIGIP--GGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPS 169
Query: 479 G 479
Sbjct: 170 I 170
|
| >d2fcja1 c.136.1.1 (A:1-114) Hypothetical protein RBSTP2199 {Bacillus stearothermophilus [TaxId: 1422]} Length = 114 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Toprim domain superfamily: Toprim domain family: Toprim domain domain: Hypothetical protein RBSTP2199 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 35.2 bits (81), Expect = 0.004
Identities = 20/128 (15%), Positives = 42/128 (32%), Gaps = 17/128 (13%)
Query: 293 RKNNETILVFDLGGGTFDV-SVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKR 351
R+ + I+V G D V V + V+ + + ++ LA+ +
Sbjct: 2 RRVEKVIIV----EGRSDKQKVAAVLNE--PVVIVCTNGTIS-----DARLEELADELEG 50
Query: 352 DEGVVLL-NDKQALQRLTEAAEKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKF 410
+ +L D+ + + + I + A H+ L RA+F
Sbjct: 51 YDVYLLADADEAG----EKLRRQFRRMFPEAEHLYIDRAYREVAAAPIWHLAQVLLRARF 106
Query: 411 EELCSDLL 418
+ L+
Sbjct: 107 DVRIESLM 114
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 593 | |||
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.88 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.86 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.85 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.81 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.81 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.51 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.5 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.34 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.72 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 98.42 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 98.42 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 98.17 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 98.04 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.91 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.79 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.79 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 96.17 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 96.11 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 95.78 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 95.22 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 95.12 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 94.24 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 93.14 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 92.29 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 92.27 | |
| d2zgya1 | 157 | Plasmid segregation protein ParM {Escherichia coli | 92.13 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 90.27 | |
| d1u6za3 | 177 | Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 | 86.89 | |
| d2aa4a2 | 170 | N-acetylmannosamine kinase NanK {Escherichia coli | 83.69 | |
| d2hoea2 | 169 | N-acetylglucosamine kinase {Thermotoga maritima [T | 83.37 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 82.97 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=5.2e-36 Score=284.47 Aligned_cols=192 Identities=58% Similarity=0.949 Sum_probs=181.1
Q ss_pred ceEEEEeeCCceEEEEEEEEc----CCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHH
Q 047555 297 ETILVFDLGGGTFDVSVLEVG----DGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAE 372 (593)
Q Consensus 297 ~~vlVvD~GggT~Dvsv~~~~----~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 372 (593)
.+|||||+||||+|++++++. +..+++++..++..+||.+||++|++|+.++++++++.++..++..+.+|+++||
T Consensus 3 ~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e 82 (198)
T d1dkgd2 3 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAE 82 (198)
T ss_dssp EEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Confidence 479999999999999999997 4568899999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChH
Q 047555 373 KAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIP 452 (593)
Q Consensus 373 ~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p 452 (593)
++|+.||...+..++++.+..+..+..+++++|||++|+++++|+++++.++|+++|++++++..+|+.|+|+||+|++|
T Consensus 83 ~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~p 162 (198)
T d1dkgd2 83 KAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMP 162 (198)
T ss_dssp HHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSH
T ss_pred HHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCCH
Confidence 99999999999999999887777777788999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhc
Q 047555 453 AVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 453 ~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~ 488 (593)
+|++.|++.|+.++....||++|||.|||++|+.|+
T Consensus 163 ~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 163 MVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 999999999998899999999999999999999875
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=2.9e-34 Score=271.66 Aligned_cols=190 Identities=50% Similarity=0.792 Sum_probs=176.8
Q ss_pred CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHH
Q 047555 295 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKA 374 (593)
Q Consensus 295 ~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 374 (593)
.+++|||||+||||+|+|++++.++.++++++.++..+||.+||++|++|+.+++.++.+.++..+++.+.+|+.+||++
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~ 82 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERA 82 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEEeCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhH
Q 047555 375 KMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAV 454 (593)
Q Consensus 375 K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l 454 (593)
|+.|+.+.++.+.++.+..+ .++.++|+|++|+++++|+++++.+.++++|+++++...+|+.|+|+||+|++|+|
T Consensus 83 K~~ls~~~~~~~~~~~~~~~----~~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v 158 (193)
T d1bupa2 83 KRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKI 158 (193)
T ss_dssp HHHHTTSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHH
T ss_pred hhccCCCceEEEEEecccCC----CccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHH
Confidence 99999999998888765433 35789999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHhHhC-CCCCCCCCChhHHHhHHHHHhhhhc
Q 047555 455 QELVKKMTG-KDPNVTVNPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 455 ~~~l~~~~g-~~v~~~~~p~~aVA~GAal~a~~l~ 488 (593)
++.|++.|+ .++..+.||++|||+|||++|+.++
T Consensus 159 ~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 159 QKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp HHHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 999999995 6677788999999999999999874
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.8e-34 Score=270.62 Aligned_cols=180 Identities=56% Similarity=0.930 Sum_probs=168.0
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--hh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--EV 190 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~~ 190 (593)
.|||||||||||+||++.++.++++.|++|++.+||+++|.+++++++|+.|..+...+|.++++++|+|||+... ++
T Consensus 1 ~VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (183)
T d1dkgd1 1 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEV 80 (183)
T ss_dssp CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHH
Confidence 3799999999999999999999999999999999999999988899999999999999999999999999999876 56
Q ss_pred hhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHH
Q 047555 191 DDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRI 270 (593)
Q Consensus 191 ~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~ 270 (593)
+...+.+||+++..+++...+.+. ++.++++++++++|++|++.++++++.++.++|||||++|++.||++|++||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~ 158 (183)
T d1dkgd1 81 QRDVSIMPFKIIAADNGDAWVEVK--GQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 158 (183)
T ss_dssp HHHTTTCSSEEEECSSSBEEEEET--TEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHH
T ss_pred HhhhhcCCEEEEEcCCCcEEEEEC--CEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 677778999999999998887765 788999999999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEechhHHHHHHhccccC
Q 047555 271 AGLEVLRIINEPTAASLAYGFERK 294 (593)
Q Consensus 271 AGl~~v~li~Ep~AAal~~~~~~~ 294 (593)
||++.+.+++||+|||++|+.+++
T Consensus 159 AG~~~~~li~EP~AAAl~Ygl~k~ 182 (183)
T d1dkgd1 159 AGLEVKRIINEPTAAALAYGLDKG 182 (183)
T ss_dssp TTCEESCCCBHHHHHHHHHTCCC-
T ss_pred cCCCEEEEecCHHHHHHHhcccCC
Confidence 999999999999999999998643
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.1e-33 Score=262.58 Aligned_cols=180 Identities=52% Similarity=0.803 Sum_probs=160.8
Q ss_pred CeEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCc--h
Q 047555 112 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMS--E 189 (593)
Q Consensus 112 ~~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~--~ 189 (593)
+.|||||||||||+||++.+|+++++.+.+|++.+||+|+|.+ +++++|..|+.+...+|.++++++|+|||+.+. .
T Consensus 1 g~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~-~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~ 79 (185)
T d1bupa1 1 GPAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAV 79 (185)
T ss_dssp CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECS-SCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHH
T ss_pred CCEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECC-CcEEEeechHHHhhcCcccchhHHHHHhCCCCccHH
Confidence 4689999999999999999999999999999999999999985 588999999999999999999999999999887 4
Q ss_pred hhhhhccCceEEEECCCCcEEE--EeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHH
Q 047555 190 VDDESKQVSYRVVRDENGNVKL--DCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDA 267 (593)
Q Consensus 190 ~~~~~~~~~~~v~~~~~g~~~i--~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~A 267 (593)
...+.+.+++.+..+. +...+ ......+.++++++++++|++|++.++.+++.++.++|||||++|++.||++|++|
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~A 158 (185)
T d1bupa1 80 VQSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDA 158 (185)
T ss_dssp HHHHHTTCSSEEEEET-TEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHhhcCCceEEcCC-CCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHH
Confidence 5566778888877644 43333 33444567999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceEEEechhHHHHHHhcccc
Q 047555 268 GRIAGLEVLRIINEPTAASLAYGFER 293 (593)
Q Consensus 268 a~~AGl~~v~li~Ep~AAal~~~~~~ 293 (593)
|+.||++++.+++||+|||++|++++
T Consensus 159 a~~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 159 GTIAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HHHcCCCeEEEEcCHHHHHHHhcccC
Confidence 99999999999999999999998764
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=9.9e-23 Score=182.98 Aligned_cols=105 Identities=63% Similarity=1.017 Sum_probs=102.4
Q ss_pred CCCCceEEEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCC
Q 047555 489 GDVSDIVLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIP 568 (593)
Q Consensus 489 ~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~ 568 (593)
+.+++++++|++|+++||++.+|.|.+|||||+++|+++++.|++..|+|+.+.|.|||||+..+++|.+||+|.|+|+|
T Consensus 2 ~~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~ip 81 (159)
T d1yuwa1 2 ENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIP 81 (159)
T ss_dssp CCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCC
T ss_pred CccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCCC
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCeEEEEEEECCCceEEEEc
Q 047555 569 PAPRGVPQIEVKFDIDANGILSVTA 593 (593)
Q Consensus 569 ~~~~g~~~i~v~f~~d~~g~l~v~a 593 (593)
+.|+|.++|+|+|++|.||+|+|+|
T Consensus 82 ~~~~G~~~I~Vtf~id~nGil~V~A 106 (159)
T d1yuwa1 82 PAPRGVPQIEVTFDIDANGILNVSA 106 (159)
T ss_dssp CCSTTCCCEEEEEEECTTCCEEEEE
T ss_pred cCCCCCceEEEEEEEcCCCeEEEEE
Confidence 9999999999999999999999987
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=6.5e-22 Score=168.30 Aligned_cols=99 Identities=70% Similarity=1.084 Sum_probs=96.7
Q ss_pred EEEecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCc
Q 047555 495 VLLDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGV 574 (593)
Q Consensus 495 ~~~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~ 574 (593)
+++|++|+++|++..++.|.+|||||+++|+++++.|++..|+|+.+.|.|||||+....+|.+||+|.|+++|+.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEECCCceEEEEc
Q 047555 575 PQIEVKFDIDANGILSVTA 593 (593)
Q Consensus 575 ~~i~v~f~~d~~g~l~v~a 593 (593)
++|+|+|++|.||+|+|+|
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a 100 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSA 100 (118)
T ss_dssp SCEEEEEEECTTCCEEEEE
T ss_pred cEEEEEEEecCCCeEEEEE
Confidence 9999999999999999987
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.85 E-value=2.8e-21 Score=163.72 Aligned_cols=97 Identities=56% Similarity=0.956 Sum_probs=95.0
Q ss_pred EecccccceEEeeCCEEEEeecCCCccCCeeEEEEEecCCCceeEEEEEEecCcccccCCceeeEEEEeCCCCCCCCcCe
Q 047555 497 LDVTPLSIGLETLGGVMTKIIPRNTTLPTSKSEVFSTAGDGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQ 576 (593)
Q Consensus 497 ~~~~~~s~gi~~~~~~~~~li~~g~~~P~~~~~~~~~~~d~q~~~~i~i~~g~~~~~~~~~~lg~~~l~~i~~~~~g~~~ 576 (593)
+|++|+++||++.++.|.+||+||+++|+++++.|++..|+|+.+.|.|||||+....+|..||+|.|.++|+.|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCceEEEEc
Q 047555 577 IEVKFDIDANGILSVTA 593 (593)
Q Consensus 577 i~v~f~~d~~g~l~v~a 593 (593)
|+|+|++|.||+|+|+|
T Consensus 81 I~Vtf~id~nGiL~V~A 97 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTA 97 (115)
T ss_dssp EEEEEEECTTCCEEEEE
T ss_pred EEEEEEccCCceEEEEE
Confidence 99999999999999997
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=4.1e-20 Score=163.61 Aligned_cols=133 Identities=31% Similarity=0.374 Sum_probs=99.5
Q ss_pred EEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEe-CCcEE-ecHHHHHhhhhCCCchhhhhhhhhCCCCchhh
Q 047555 114 VVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTK-IGDRL-VGQIAKRQAVVNPENTFFSVKRFIGRKMSEVD 191 (593)
Q Consensus 114 vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~-~~~~~-~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~ 191 (593)
.||||||||||+||+..+ ..++. .|+.+++.. .+..+ +|..+......++.+. ..+|+
T Consensus 2 ~iGIDlGTtns~va~~~~--~~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~-~~~k~---------- 61 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGK--GIVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATI-KAIRP---------- 61 (137)
T ss_dssp EEEEEECSSEEEEEETTT--EEEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTE-EEECC----------
T ss_pred eEEEEcChhhEEEEEeCC--CEEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccc-eeEEe----------
Confidence 689999999999987433 33432 367777654 34454 6666543322222221 11111
Q ss_pred hhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEeCCCCCHHHHHHHHHHHHHc
Q 047555 192 DESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKITKAVVTVPAYFNDSQRTATKDAGRIA 271 (593)
Q Consensus 192 ~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~~~~~viTVPa~~~~~~r~~l~~Aa~~A 271 (593)
..+..+.+.+....++.+++..+....+..+.++|||||++|++.||+++++|++.|
T Consensus 62 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~A 118 (137)
T d1jcea1 62 -----------------------MRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEA 118 (137)
T ss_dssp -----------------------EETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred -----------------------ccCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHc
Confidence 114456778899999999999999988889999999999999999999999999999
Q ss_pred CCceEEEechhHHHHHHh
Q 047555 272 GLEVLRIINEPTAASLAY 289 (593)
Q Consensus 272 Gl~~v~li~Ep~AAal~~ 289 (593)
|+++++|++||+|||+++
T Consensus 119 Gl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 119 GASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp TCSEEEEEEHHHHHHHHT
T ss_pred CCCEEEEeCCHHHHHhCC
Confidence 999999999999999975
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=1.4e-20 Score=176.75 Aligned_cols=181 Identities=20% Similarity=0.261 Sum_probs=128.8
Q ss_pred cCCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHH
Q 047555 293 RKNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAE 372 (593)
Q Consensus 293 ~~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 372 (593)
.+++..+||||+||||||+++++.++..+ .+....||.+++..+..++...+..... .......+....
T Consensus 3 ~~~~~gvlV~DiGGGT~Dvsi~~~g~~~~-----~~~~~~gg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 71 (196)
T d1jcea2 3 VEEPSGNMVVDIGGGTTEVAVISLGSIVT-----WESIRIAGDEMDEAIVQYVRETYRVAIG------ERTAERVKIEIG 71 (196)
T ss_dssp TTSSSCEEEEEECSSCEEEEEEETTEEEE-----EEEESCSHHHHHHHHHHHHHHHHCEECC------HHHHHHHHHHHC
T ss_pred CCCCCceEEEEcCCCcEEEEEEEcCCEeE-----EeeecCCCcccccchhhhhhhhhccccc------chhHHHHHHHHh
Confidence 45678899999999999999999775443 4456789999999999998887654432 111111111110
Q ss_pred HHhhhcC-CCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCeEEEEeCC
Q 047555 373 KAKMELS-SLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFN---DLDEVILVGGS 448 (593)
Q Consensus 373 ~~K~~Ls-~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~---~i~~VvLvGG~ 448 (593)
.++.... ......+.... ..........+++.++++++.+++.++...+.+.++.+..... .++.|+||||+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLvGGs 147 (196)
T d1jcea2 72 NVFPSKENDELETTVSGID----LSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGG 147 (196)
T ss_dssp BCSCCHHHHHCEEEEEEEE----TTTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGG
T ss_pred hhhhhhhccccceeeeeee----ccCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEeCch
Confidence 0000000 00111222211 1222346678999999999999999999999999987664321 24679999999
Q ss_pred CChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhc
Q 047555 449 TRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLA 488 (593)
Q Consensus 449 s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~ 488 (593)
|++|+|++++++.||.++....||++|||+|||+++..+.
T Consensus 148 S~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~~~~ 187 (196)
T d1jcea2 148 SLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 187 (196)
T ss_dssp GCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred hcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHHCHH
Confidence 9999999999999999999999999999999999876543
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.51 E-value=1.6e-14 Score=134.41 Aligned_cols=159 Identities=18% Similarity=0.236 Sum_probs=113.4
Q ss_pred CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHh
Q 047555 296 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAK 375 (593)
Q Consensus 296 ~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 375 (593)
+..++|+|+|++|||++++.-+... . .....+||++||+.|.+.+.-. .++||+.|
T Consensus 6 ~~Gv~vvDiG~~tt~i~i~~~G~l~--~---~~~i~~GG~~iT~~Ia~~l~i~-------------------~~~AE~iK 61 (191)
T d1e4ft2 6 DRGVVVVNLGYNFTGLIAYKNGVPI--K---ISYVPVGMKHVIKDVSAVLDTS-------------------FEESERLI 61 (191)
T ss_dssp HHCEEEEEECSSCEEEEEEETTEEE--E---EEEESCCHHHHHHHHHHHHTCC-------------------HHHHHHHH
T ss_pred hCCEEEEEeCCCcEEEEEEECCeEE--E---EEEEeeChHHHHHHHHHHhccc-------------------HHHHHHHH
Confidence 4568999999999999998844322 2 3336799999999998765421 66899999
Q ss_pred hhcCCCce---eeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCCeEEEEe
Q 047555 376 MELSSLTQ---ANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLS------FNDLDEVILVG 446 (593)
Q Consensus 376 ~~Ls~~~~---~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~------~~~i~~VvLvG 446 (593)
+.+..... ....++... .++ .....+++..+.+++++.++++.+.+++.++..... ...+..|+|+|
T Consensus 62 ~~~g~~~~~~~~~~~i~~~~--~~~--~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~IvLtG 137 (191)
T d1e4ft2 62 ITHGNAVYNDLKEEEIQYRG--LDG--NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTG 137 (191)
T ss_dssp HHHCCSCCTTCCCCEEEEEC--TTS--SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCEEEES
T ss_pred hhccccccccccchhccccc--ccC--CCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceEEEec
Confidence 98763321 111122111 111 234578899999999999999999988888764321 11235699999
Q ss_pred CCCChHhHHHHHHhHhCCCCCC-----------------CCCChhHHHhHHHH
Q 047555 447 GSTRIPAVQELVKKMTGKDPNV-----------------TVNPDEVVALGAAV 482 (593)
Q Consensus 447 G~s~~p~l~~~l~~~~g~~v~~-----------------~~~p~~aVA~GAal 482 (593)
|+|++|+|.+.+++.|+.++.. ..+|.+++|.|+++
T Consensus 138 Ggs~l~gl~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 138 GGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp GGGGSTTHHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred chhhhhhHHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 9999999999999999866421 23788999999885
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=7.5e-15 Score=133.01 Aligned_cols=156 Identities=21% Similarity=0.246 Sum_probs=101.4
Q ss_pred CCCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHH
Q 047555 294 KNNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEK 373 (593)
Q Consensus 294 ~~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 373 (593)
.+.+++||||+||||||+++++- +...+....++..+||.+|++.+.+++...+.... ...... .
T Consensus 4 ~e~~~ilViDiGggTtDi~v~~~--~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~~-------~~~~~~------~ 68 (163)
T d2zgya2 4 DELDSLLIIDLGGTTLDISQVMG--KLSGISKIYGDSSLGVSLVTSAVKDALSLARTKGS-------SYLADD------I 68 (163)
T ss_dssp CTTCEEEEEEECSSCEEEEEEEG--GGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGGG-------HHHHHH------H
T ss_pred CCCCCEEEEECCCCcEEEEEEcC--CeEEEEEeeccccccchHHHHHHHHhhHHhhchhh-------hhhHHH------H
Confidence 45678999999999999999873 33344555677899999999999887764433211 000000 0
Q ss_pred HhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHh
Q 047555 374 AKMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPA 453 (593)
Q Consensus 374 ~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~ 453 (593)
++.... ... ... .......++.+++++++.++.+.+.+.+.+.+ ..+++.|+|+||+|+ .
T Consensus 69 ~~~~~~-~~~-------~~~------~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~~----~~~~~~iil~GGGs~--l 128 (163)
T d2zgya2 69 IIHRKD-NNY-------LKQ------RINDENKISIVTEAMNEALRKLEQRVLNTLNE----FSGYTHVMVIGGGAE--L 128 (163)
T ss_dssp HHTTTC-HHH-------HHH------HSSSSCTHHHHHHHHHHHHHHHHHHHHHHHTT----CCCCCEEEEESTTHH--H
T ss_pred HHhhcc-ccc-------ccc------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----ccccceEEEECchHH--H
Confidence 000000 000 000 00112244566666666666666666555543 457899999999985 5
Q ss_pred HHHHHHhHhCC---CCCCCCCChhHHHhHHHHHh
Q 047555 454 VQELVKKMTGK---DPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 454 l~~~l~~~~g~---~v~~~~~p~~aVA~GAal~a 484 (593)
+++.|++.|+. ++....||++|+|+|+.++|
T Consensus 129 l~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 129 ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 99999999964 46678999999999999886
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.34 E-value=1.2e-12 Score=118.13 Aligned_cols=153 Identities=17% Similarity=0.119 Sum_probs=101.7
Q ss_pred CCceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHH
Q 047555 295 NNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKA 374 (593)
Q Consensus 295 ~~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 374 (593)
++..+||+|+||||||++++..++..+.. ..+.+...|+.++++.+.+++..++..... .+..+.+
T Consensus 4 ~~g~~lviDIG~gTtDi~v~~~~~~~~~~-~~~~~~~~g~~~i~~~i~~~i~~~~~~~~~-------------~~~~~~~ 69 (161)
T d2fsja1 4 QPGYGVVIDVGSRTTDVLTINLMDMEPVV-ELSFSLQIGVGDAISALSRKIAKETGFVVP-------------FDLAQEA 69 (161)
T ss_dssp CSSEEEEEEECSSCEEEEEEETTTTEECG-GGCEEESCCHHHHHHHHHHHHHHHHCCCCC-------------HHHHHHH
T ss_pred CCCcEEEEEcCcCeEEEEEEECCCeEEEE-EEeccHhHHHHHHHHHHHHHHHHHHHhhhh-------------HHHHHHH
Confidence 45779999999999999999876654411 223346789999999999888877653321 1112221
Q ss_pred hhhcCCCceeeEEeccccccCCCCceeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhH
Q 047555 375 KMELSSLTQANISLPFITATADGPKHIETTLTRAKFEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAV 454 (593)
Q Consensus 375 K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l 454 (593)
... ... .. + ... -.++.+.+.++++++.+.+.+...+... ...++.|+|+||++.+ +
T Consensus 70 ~~~-----~~~--~~-------g---~~~-~~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga~l--l 126 (161)
T d2fsja1 70 LSH-----PVM--FR-------Q---KQV-GGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGSNL--I 126 (161)
T ss_dssp TTS-----CEE--ET-------T---EEE-CSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTHHH--H
T ss_pred Hhc-----ccc--cc-------c---ccc-hHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHHHH--H
Confidence 111 000 00 0 011 1245667777777777777777766542 2457899999999986 8
Q ss_pred HHHHHhHhCCCC--CCCCCChhHHHhHHHHHh
Q 047555 455 QELVKKMTGKDP--NVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 455 ~~~l~~~~g~~v--~~~~~p~~aVA~GAal~a 484 (593)
++.+++.|+... ..+.||+.|+|+|.-..|
T Consensus 127 ~~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 127 GDRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp GGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HHHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 899999997543 345899999999987654
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.72 E-value=2.8e-07 Score=87.95 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhh
Q 047555 412 ELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 412 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
+++...++.+...+...+... .+++.|++.||.++.+++++.+++.++.++..+.+|.++.|+|||++|..
T Consensus 185 ~i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~ 255 (259)
T d1huxa_ 185 DIIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYK 255 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHH
Confidence 334444444444444444432 34677999999999999999999999999999999999999999999875
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.42 E-value=8.1e-08 Score=90.58 Aligned_cols=166 Identities=17% Similarity=0.241 Sum_probs=99.6
Q ss_pred EEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhhc
Q 047555 299 ILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKMEL 378 (593)
Q Consensus 299 vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~L 378 (593)
-||||+|++.|.++-+..+ +.+........+||.++++.|.++|...-. ....... .+..+..|+.+
T Consensus 4 glVVDiG~~~t~v~PV~eG---~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~-----~~~~~~~-----~~~~~~~ke~~ 70 (225)
T d2fxua2 4 GIVLDSGDGVTHNVPIYEG---YALPHAIMRLDLAGRDLTDYLMKILTERGY-----SFVTTAE-----REIVRDIKEKL 70 (225)
T ss_dssp EEEEEECSSCEEEEEEETT---EECGGGCEEESCCHHHHHHHHHHHHHHHTC-----CCCSHHH-----HHHHHHHHHHH
T ss_pred EEEEEcCCCcEEEEEEECC---EEchhceEEEECcHHHHHHHHHHHHhhccC-----CcCCHHH-----HHHHHHHHHHH
Confidence 4899999999999988744 112222333579999999999998876421 1111110 11222333332
Q ss_pred C----------------CCceeeEEeccccccCCCCceeEEEecHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC
Q 047555 379 S----------------SLTQANISLPFITATADGPKHIETTLTRAKF---EELCSDLL-----DRLKKPVETALRDAKL 434 (593)
Q Consensus 379 s----------------~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~---e~~~~~~~-----~~i~~~i~~~l~~~~~ 434 (593)
. ........+| | ...+.+..+.+ |-+|+|.. ..+.++|.+.+..+..
T Consensus 71 ~~~~~d~~~e~~~~~~~~~~~~~~~lp------d---g~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~ 141 (225)
T d2fxua2 71 CYVALDFENEMATAASSSSLEKSYELP------D---GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDI 141 (225)
T ss_dssp CCCCSSHHHHHHHHHHCSTTCEEEECT------T---SCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCH
T ss_pred hhcccchhHHHhhcccCcccceeEECC------C---CCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCc
Confidence 2 2222222222 1 23466665555 23333321 2366666666665432
Q ss_pred C--CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChhHHHhHHHHHhhh
Q 047555 435 S--FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDEVVALGAAVQGGV 486 (593)
Q Consensus 435 ~--~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~aVA~GAal~a~~ 486 (593)
+ ..-...|+|+||+|.+|++.++|++.+. .++....++..++..||+++|..
T Consensus 142 d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 142 DIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp HHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred chhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 2 1112579999999999999999988651 23445568889999999999875
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.42 E-value=8.5e-08 Score=92.41 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=100.7
Q ss_pred eEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhhh
Q 047555 298 TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKME 377 (593)
Q Consensus 298 ~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 377 (593)
+=+|||+|.+.|+++.+.-+ +.+.......++||.++++.|.++|.++ +........ .+.++..|+.
T Consensus 4 TGlVVDiG~~~T~v~PV~eG---~~l~~~~~~~~~GG~~lt~~L~~~L~~~-----~~~~~~~~~-----~~~~~~~ke~ 70 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVAEG---YVIGSCIKHIPIAGRDITYFIQQLLRDR-----EVGIPPEQS-----LETAKAVKER 70 (258)
T ss_dssp CEEEEEESSSCEEEEEEETT---EECGGGCEEESCSHHHHHHHHHHHHHTT-----CCCCCGGGH-----HHHHHHHHHH
T ss_pred EEEEEEcCCCcEEEEEEECC---EEchhheEEEeCcHHHHHHHHHHHHHHc-----CCCCCcHHH-----HHHHHhHHhh
Confidence 34999999999999988744 1111122336799999999999888643 111111000 1122222322
Q ss_pred cCCC-----------------ceeeEEeccccccCCCCceeEEEecHHHHH---HHHHHH------HHHHHHHHHHHHHH
Q 047555 378 LSSL-----------------TQANISLPFITATADGPKHIETTLTRAKFE---ELCSDL------LDRLKKPVETALRD 431 (593)
Q Consensus 378 Ls~~-----------------~~~~i~i~~~~~~~~~~~~~~~~itr~~~e---~~~~~~------~~~i~~~i~~~l~~ 431 (593)
++.. .......+ +........+.+..+.|. -+|.|- ...+.++|.+++.+
T Consensus 71 ~~~v~~d~~~e~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~si~~ 146 (258)
T d1k8ka2 71 YSYVCPDLVKEFNKYDTDGSKWIKQYTGI----NAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQN 146 (258)
T ss_dssp HCCCCSCHHHHHHHHHHSGGGTCEEEEEE----CTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHH
T ss_pred hcccccchHHHHHhhcccccccccccccc----cccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHHHHHh
Confidence 2211 01111111 111223455667666662 233321 13477888888887
Q ss_pred cCCCCCC--CCeEEEEeCCCChHhHHHHHHhHhC------------------------CCCCCCCCChhHHHhHHHHHhh
Q 047555 432 AKLSFND--LDEVILVGGSTRIPAVQELVKKMTG------------------------KDPNVTVNPDEVVALGAAVQGG 485 (593)
Q Consensus 432 ~~~~~~~--i~~VvLvGG~s~~p~l~~~l~~~~g------------------------~~v~~~~~p~~aVA~GAal~a~ 485 (593)
+...... ...|+|+||+|.+|++.++|.+.+. .++..+.++..++..||+++|.
T Consensus 147 ~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggsila~ 226 (258)
T d1k8ka2 147 CPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAS 226 (258)
T ss_dssp SCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTT
T ss_pred ccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHHHHHc
Confidence 6644222 3679999999999999999976551 1223344678899999999986
Q ss_pred h
Q 047555 486 V 486 (593)
Q Consensus 486 ~ 486 (593)
.
T Consensus 227 l 227 (258)
T d1k8ka2 227 T 227 (258)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.17 E-value=9.7e-06 Score=69.82 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=88.8
Q ss_pred EEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCC---------cEEecHHHHHhhhhCCCchhhhhhhhhCC
Q 047555 115 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIG---------DRLVGQIAKRQAVVNPENTFFSVKRFIGR 185 (593)
Q Consensus 115 VGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~K~~lg~ 185 (593)
|-||+|+.+++++++.+..|.++ +||++...... ...+|+++....
T Consensus 2 vViD~Gs~~~k~G~age~~P~~~--------~ps~~g~~~~~~~~~~~~~~~~~igd~~~~~~----------------- 56 (140)
T d2fxua1 2 LVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----------------- 56 (140)
T ss_dssp EEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHT-----------------
T ss_pred EEEECCCCeEEEeeCCCCCcceE--------eccceeeecccccccCccccceeeChhHhhcc-----------------
Confidence 67999999999999988888766 57777654321 233555443210
Q ss_pred CCchhhhhhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCCC--cCcEEEEeCCCCCHHHHHH
Q 047555 186 KMSEVDDESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDK--ITKAVVTVPAYFNDSQRTA 263 (593)
Q Consensus 186 ~~~~~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~~--~~~~viTVPa~~~~~~r~~ 263 (593)
....+..+.....+...+....+++++... .+... -..+++|-|.......|+.
T Consensus 57 ---------------------~~~~~~~p~~~g~v~dwd~~e~~~~~~~~~---~l~~~~~~~pvlltE~~~~~~~~r~~ 112 (140)
T d2fxua1 57 ---------------------GILTLKYPIEHGIITNWDDMEKIWHHTFYN---ELRVAPEEHPTLLTEAPLNPKANREK 112 (140)
T ss_dssp ---------------------TSEEEECSEETTEECCHHHHHHHHHHHHHT---TSCCCGGGSCEEEEECTTCCHHHHHH
T ss_pred ---------------------ccccccCcCcCCcccCHHHHHHHHHHhhhh---hcccCCCCCcceeeccCCCCHHHHHH
Confidence 011122222244556678888888887753 23322 2359999999999999999
Q ss_pred HHHH-HHHcCCceEEEechhHHHHHHhc
Q 047555 264 TKDA-GRIAGLEVLRIINEPTAASLAYG 290 (593)
Q Consensus 264 l~~A-a~~AGl~~v~li~Ep~AAal~~~ 290 (593)
|.+. ++..+++.+.+...|..++++++
T Consensus 113 ~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 113 MTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp HHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred HHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 9887 78889999999999999998764
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.04 E-value=1e-05 Score=71.16 Aligned_cols=148 Identities=18% Similarity=0.176 Sum_probs=90.4
Q ss_pred eEEEEEcCccceEEEEEECCeeEEEeCCCCCccceEEEEEEeCCcEEecHHHHHhhhhCCCchhhhhhhhhCCCCchhhh
Q 047555 113 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKIGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSEVDD 192 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~g~~~ii~~~~g~~~~PS~V~~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~~lg~~~~~~~~ 192 (593)
..|-||+|+.+++++++.+..|.++ +||+|+...+ ...|........... .....++|...
T Consensus 4 PavViD~GS~~~KaG~age~~P~~i--------~Ps~vg~~~~--~~~~~~~~~~~~~~~----~~~~~~ig~e~----- 64 (158)
T d1k8ka1 4 PACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKES--AKVGDQAQRRVMKGV----DDLDFFIGDEA----- 64 (158)
T ss_dssp CCEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-------------CCCTT----GGGCEEEGGGG-----
T ss_pred CcEEEECCCCeEEEEECCCCCCCEE--------eccceeeccc--ccccCchhcccccCC----CccceecChhh-----
Confidence 4578999999999999987788766 5888886532 122322211100000 00001111100
Q ss_pred hhccCceEEEECCCCcEEEEeCCCCeeeeHHHHHHHHHHHHHHHHHHHhCC--CcCcEEEEeCCCCCHHHHHHHHHH-HH
Q 047555 193 ESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLND--KITKAVVTVPAYFNDSQRTATKDA-GR 269 (593)
Q Consensus 193 ~~~~~~~~v~~~~~g~~~i~~~~~~~~~~~~~l~~~~L~~l~~~a~~~l~~--~~~~~viTVPa~~~~~~r~~l~~A-a~ 269 (593)
. +.+...+..+.....+...+.+..+++++... .+.. ....+++|.|...+..+|+.|.+. ++
T Consensus 65 -~----------~~~~~~~~~pi~~G~i~dwd~~e~l~~~~~~~---~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE 130 (158)
T d1k8ka1 65 -I----------EKPTYATKWPIRHGIVEDWDLMERFMEQVIFK---YLRAEPEDHYFLLTEPPLNTPENREYTAEIMFE 130 (158)
T ss_dssp -T----------SCTTSEEECCEETTEESCHHHHHHHHHHHHHT---TTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHH
T ss_pred -h----------hCCCccccccccCCeEecHHHHHHHHHHHHHH---hcccCCCCCceeeeecCCCCHHHHHHHHHHHhh
Confidence 0 01112222233344566778888888776543 2332 234599999999999999998777 78
Q ss_pred HcCCceEEEechhHHHHHHhcccc
Q 047555 270 IAGLEVLRIINEPTAASLAYGFER 293 (593)
Q Consensus 270 ~AGl~~v~li~Ep~AAal~~~~~~ 293 (593)
..+++.+.+...|..++++++...
T Consensus 131 ~~~vpa~~~~~~~~Lslya~g~~~ 154 (158)
T d1k8ka1 131 SFNVPGLYIAVQAVLALAASWTSR 154 (158)
T ss_dssp TSCCSEEEEEEHHHHHHHHGGGST
T ss_pred hcCCCEEEEEchhhhhheeCCCCC
Confidence 889999999999999999987653
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=7.2e-06 Score=74.61 Aligned_cols=148 Identities=17% Similarity=0.238 Sum_probs=83.5
Q ss_pred EEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHH--------
Q 047555 300 LVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAA-------- 371 (593)
Q Consensus 300 lVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~-------- 371 (593)
||||+|.+.|.++-+.-+ +.+........+||.++++.|.+++.+.-. ......+......+.+.+
T Consensus 2 lVVDiG~~~T~v~PV~dG---~~l~~a~~~~~igG~~lt~~l~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~v~~~~~ 75 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVYEG---FSLPHLTRRLDIAGRDITRYLIKLLLLRGY---AFNHSADFETVRMIKEKLCYVGYNIE 75 (190)
T ss_dssp CEEEECSSCEEEECEETT---EECSTTCEEESCCHHHHHHHHHHHHHHTTC---CCCTTTTHHHHHHHHHHHCCCCSSHH
T ss_pred EEEEcCCCcEEEEEeECC---EEcccceEEEeccHHHHHHHHHHHHHhcCC---cccchHHHHHHHHHHhhhhhhcccHH
Confidence 699999999999977643 111222233579999999999888765321 111111222222111111
Q ss_pred -HHHhhhcCCCceeeEEeccccccCCCCceeEEEecHHHHH---HHHHHHH-----HHHHHHHHHHHHHcCCCCC--CCC
Q 047555 372 -EKAKMELSSLTQANISLPFITATADGPKHIETTLTRAKFE---ELCSDLL-----DRLKKPVETALRDAKLSFN--DLD 440 (593)
Q Consensus 372 -e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e---~~~~~~~-----~~i~~~i~~~l~~~~~~~~--~i~ 440 (593)
+..+............++ +...+.+..+.|. -+|+|.. ..+.++|.+++.++..+.. -.+
T Consensus 76 ~e~~~~~~~~~~~~~~~lp---------dg~~i~i~~er~~~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r~~L~~ 146 (190)
T d1k8kb1 76 QEQKLALETTVLVESYTLP---------DGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYK 146 (190)
T ss_dssp HHHHHHHHCSTTCEEEECT---------TSCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHT
T ss_pred HHHHhhhcccceeeeeecC---------CCcEEEEChhhccccccccChhhcCcccccHHHHHHHHHHhCCHhHHHHHHc
Confidence 111111122222222222 1234667766653 3343311 1377788888887764411 126
Q ss_pred eEEEEeCCCChHhHHHHHHhHh
Q 047555 441 EVILVGGSTRIPAVQELVKKMT 462 (593)
Q Consensus 441 ~VvLvGG~s~~p~l~~~l~~~~ 462 (593)
.|+|+||+|.+|++.++|++.+
T Consensus 147 NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 147 HIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp TCEEESGGGCSTTHHHHHHHHH
T ss_pred CEEEECcccCCCCHHHHHHHHH
Confidence 7999999999999999998876
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.79 E-value=4.4e-05 Score=65.39 Aligned_cols=164 Identities=22% Similarity=0.264 Sum_probs=90.9
Q ss_pred ceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhh
Q 047555 297 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKM 376 (593)
Q Consensus 297 ~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 376 (593)
..+.++|+|||+||.+++...+... -+.-.| .|+-++..+... +. ++ + +..+|.+|+
T Consensus 4 ~PlAIlDlGaGStDAsii~~~g~v~-a~HlAG----AG~mVTmlI~se----LG----l~---d-------~~lAE~IKk 60 (203)
T d2d0oa3 4 RPLAILDLGAGSTDASIINPKGDII-ATHLAG----AGDMVTMIIARE----LG----LE---D-------RYLAEEIKK 60 (203)
T ss_dssp SSEEEEEECSSEEEEEEECTTCCEE-EEEEEC----SHHHHHHHHHHH----HT----CC---C-------HHHHHHHHH
T ss_pred CceEEEEcCCCcccHHHhCCCCcEE-EEEecC----cchHhHHHHHHh----hC----CC---c-------HHHHHHHhh
Confidence 4578999999999999998665432 221122 355555544332 22 11 1 456777775
Q ss_pred hcCC-----------CceeeEE-ecccc--------ccCCCCceeEEEecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCC
Q 047555 377 ELSS-----------LTQANIS-LPFIT--------ATADGPKHIETTLTRAKFEELCSDLLDRL-KKPVETALRDAKLS 435 (593)
Q Consensus 377 ~Ls~-----------~~~~~i~-i~~~~--------~~~~~~~~~~~~itr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~ 435 (593)
-=-. +....+- -|... ...++...+.-.++-+++..+=+..-+++ ..-..++|+.....
T Consensus 61 yPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~d~lvP~~~~~~~Eki~~vRr~aK~kvfvtNa~RaL~~vsP~ 140 (203)
T d2d0oa3 61 YPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQVSPT 140 (203)
T ss_dssp SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred cchhhhccceEEEecCCceEEecCCCChHHheEEEEecCCceeecCCcccHHHHHHHHHHHhhhhhHHHHHHHHHhcCCC
Confidence 3110 0011110 00000 00111111122344555554444433332 33444556654432
Q ss_pred --CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChhHHHhHHHHH
Q 047555 436 --FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 436 --~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~aVA~GAal~ 483 (593)
..+|..|+|+||++.-.-|.+++.+.+. .++.-..-|..|||.|.++.
T Consensus 141 gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~ 198 (203)
T d2d0oa3 141 GNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILS 198 (203)
T ss_dssp SCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHH
T ss_pred CCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHH
Confidence 4578999999999998888888888873 24555678999999999874
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.79 E-value=0.00022 Score=61.10 Aligned_cols=164 Identities=19% Similarity=0.225 Sum_probs=89.5
Q ss_pred ceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHHHHHHHHHhhhhhCCCCcCCHHHHHHHHHHHHHHhh
Q 047555 297 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRVVDWLAENFKRDEGVVLLNDKQALQRLTEAAEKAKM 376 (593)
Q Consensus 297 ~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 376 (593)
....++|+|||++|.+++.-.+....+ .-.| .|+-++..+...| . ++ + +..+|.+|+
T Consensus 4 ~plaIlDlG~GStDasii~~~g~v~av-hlAG----AG~mVTmlI~~eL----G----l~---d-------~~lAE~IKk 60 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVNAEGQITAV-HLAG----AGNMVSLLIKTEL----G----LE---D-------LSLAEAIKK 60 (202)
T ss_dssp SSEEEEEECSSEEEEEEECSSSCEEEE-EEEC----CHHHHHHHHHHHH----T----CS---C-------HHHHHHHHH
T ss_pred CceEEEEcCCCccchhhccCCCcEEEE-EecC----CchhhHHHHHHHh----C----CC---c-------HHHHHHHhh
Confidence 457899999999999999866544222 1122 3566665543322 1 11 1 456777775
Q ss_pred hcCC-----------CceeeEEeccccc---------cCCCCceeEEEecHHHHHHHHHHHHHHH-HHHHHHHHHHcCCC
Q 047555 377 ELSS-----------LTQANISLPFITA---------TADGPKHIETTLTRAKFEELCSDLLDRL-KKPVETALRDAKLS 435 (593)
Q Consensus 377 ~Ls~-----------~~~~~i~i~~~~~---------~~~~~~~~~~~itr~~~e~~~~~~~~~i-~~~i~~~l~~~~~~ 435 (593)
-=-. +....+--+.+.. ..++-..+.-.++-+++..+=+..-+++ ..-..++|+.....
T Consensus 61 yPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~vsp~ 140 (202)
T d1nbwa3 61 YPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQVSPG 140 (202)
T ss_dssp SCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSSSSTT
T ss_pred cchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhhcCCC
Confidence 3110 0111110000000 0011111222345555555444433332 22334444443332
Q ss_pred --CCCCCeEEEEeCCCChHhHHHHHHhHhC--------CCCCCCCCChhHHHhHHHHH
Q 047555 436 --FNDLDEVILVGGSTRIPAVQELVKKMTG--------KDPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 436 --~~~i~~VvLvGG~s~~p~l~~~l~~~~g--------~~v~~~~~p~~aVA~GAal~ 483 (593)
..+|..|+|+||++.-.-|.+++.+.+. .++.-..-|..|||.|.++.
T Consensus 141 gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 141 GSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp CCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred CCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 3678999999999988888888877762 24555678999999999864
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.0075 Score=54.76 Aligned_cols=61 Identities=16% Similarity=0.152 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHh----Hh---CCCCCCCCCChhHHHhHHHHHh
Q 047555 419 DRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKK----MT---GKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 419 ~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~----~~---g~~v~~~~~p~~aVA~GAal~a 484 (593)
+.+.+....+.+.. .++.|+++||.+....+++.+.+ ++ +.++..+.+...+.|.||.+.-
T Consensus 143 ~~l~~~a~~aa~~~-----~~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~galGA~l~~ 210 (212)
T d2i7na2 143 NNIGSIARMCALNE-----NIDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 210 (212)
T ss_dssp HHHHHHHHHHHHHH-----TCCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHHHHHHHHh
Confidence 33444444444443 36789999998877777777654 33 4566678899999999998763
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=96.11 E-value=0.0032 Score=58.43 Aligned_cols=53 Identities=23% Similarity=0.294 Sum_probs=45.9
Q ss_pred CCCCeEEEEeCCCChHhHHHHHHhHhCCCCCCCCCChhHHHhHHHHHhhhhcCC
Q 047555 437 NDLDEVILVGGSTRIPAVQELVKKMTGKDPNVTVNPDEVVALGAAVQGGVLAGD 490 (593)
Q Consensus 437 ~~i~~VvLvGG~s~~p~l~~~l~~~~g~~v~~~~~p~~aVA~GAal~a~~l~~~ 490 (593)
..++.|.+.||.++++.+.+.+.+.++.++.+..+++ +.++|||+.|+.-.|.
T Consensus 146 ~~~~~i~~~GG~s~s~~~~Qi~Advlg~~v~~~~~~e-~~alGaA~la~~~~G~ 198 (235)
T d1r59o2 146 IDIPLLKVDGGAAKNDLLMQFQADILDIDVQRAANLE-TTALGAAYLAGLAVGF 198 (235)
T ss_dssp CCCSEEEEEESTTSCHHHHHHHHHHHSSEEEEESCCC-TTTHHHHHHHHHHHTS
T ss_pred CCCcEEEecCcchhCHHHHhhhhhccceeeeeccccc-hHHHHHHHHHHHHcCC
Confidence 3578899999999999999999999999888776664 7899999999876664
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.22 E-value=0.0042 Score=54.03 Aligned_cols=45 Identities=20% Similarity=-0.023 Sum_probs=34.4
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHc--------CC------ceEEEechhHHHHHHhcc
Q 047555 247 KAVVTVPAYFNDSQRTATKDAGRIA--------GL------EVLRIINEPTAASLAYGF 291 (593)
Q Consensus 247 ~~viTVPa~~~~~~r~~l~~Aa~~A--------Gl------~~v~li~Ep~AAal~~~~ 291 (593)
.+|+..|..+...+++++++.++.- |. ..+.+++||.+|.++++.
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~~~l~ 161 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYLLN 161 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHHHHHH
Confidence 3788899998888899999887532 11 457789999999886653
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=95.12 E-value=0.08 Score=46.82 Aligned_cols=33 Identities=0% Similarity=-0.274 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCceEEEechhHHHHHHhc
Q 047555 258 DSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 290 (593)
Q Consensus 258 ~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~ 290 (593)
....+.+.++++.+|++...++.+|.|+|.+.+
T Consensus 161 ~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~L 193 (193)
T d1e4ft1 161 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVL 193 (193)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCcchhEEEhHHhhhhccC
Confidence 678899999999999999999999999998753
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=94.24 E-value=0.49 Score=37.34 Aligned_cols=40 Identities=10% Similarity=0.094 Sum_probs=28.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceEEEechhHHHHHHh
Q 047555 248 AVVTVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAY 289 (593)
Q Consensus 248 ~viTVPa~~~~~~r~~l~~Aa~~AGl~~v~li~Ep~AAal~~ 289 (593)
+.+.+|.......+..+.+.. -.+..+.+.+...+|++..
T Consensus 72 ~~~g~aG~~~~~~~~~l~~~~--~~~~~v~v~nDa~~A~~ga 111 (114)
T d1zc6a1 72 IGLGLSGVHNRQWAGEFESQA--PGFARLSLATDGYTTLLGA 111 (114)
T ss_dssp EEEEESCCCTTSHHHHHHHTC--CCCSEEEEECHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHhC--CCCCeEEEECHHHHHHHHh
Confidence 567888777766666665432 2346889999999998864
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=93.14 E-value=0.097 Score=47.94 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCC-CChHhHHHHHHhHh---CCCCCCCCCChhHHHhHHHHHh
Q 047555 413 LCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGS-TRIPAVQELVKKMT---GKDPNVTVNPDEVVALGAAVQG 484 (593)
Q Consensus 413 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~l~~~l~~~~---g~~v~~~~~p~~aVA~GAal~a 484 (593)
+++.+.+.+...+..+... .++..|++.||. +..|.+++.+++++ +.++..+.+++.+-|+||++++
T Consensus 196 ~~~~~~~~l~~~~~~~~~~-----~~~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 196 VIGVVGEVVTTMAITVARE-----FKTENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----TTCCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhh-----cCCCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 3333444444444444333 345679999985 67899999999988 4566678889999999999875
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=92.29 E-value=3 Score=38.63 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=43.7
Q ss_pred CCCcCcEEEEeCCCCCHHH--------HHHHHHHHHHcCCceEEEechhHHHHHHhccc------------cCCCceEEE
Q 047555 242 NDKITKAVVTVPAYFNDSQ--------RTATKDAGRIAGLEVLRIINEPTAASLAYGFE------------RKNNETILV 301 (593)
Q Consensus 242 ~~~~~~~viTVPa~~~~~~--------r~~l~~Aa~~AGl~~v~li~Ep~AAal~~~~~------------~~~~~~vlV 301 (593)
+.++..+.|++|.-.+... .-......+..+...+.+.++..++++..... ......+++
T Consensus 51 ~~~~~~igI~~pG~vd~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 130 (319)
T d1sz2a1 51 KVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAV 130 (319)
T ss_dssp CCCCCEEEEEESSCCCSSEECCSSSCCCEEHHHHHHHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEE
T ss_pred CCCcceEEEEcccCCCCCcccccccccccChHHHHHhhcccceeecceeeeeehhhhhhhhhhHHhhCcccCCCcceEEE
Confidence 4456678888885433111 00122333445677778888877777654321 112456677
Q ss_pred EeeCCceEEEEEEEEcCCE
Q 047555 302 FDLGGGTFDVSVLEVGDGV 320 (593)
Q Consensus 302 vD~GggT~Dvsv~~~~~~~ 320 (593)
+-.|.|..=+.......+.
T Consensus 131 i~~g~G~g~~~~~~~~~g~ 149 (319)
T d1sz2a1 131 YGAGTGLGVAHLVHVDKRW 149 (319)
T ss_dssp EEESSSEEEEEEEEETTEE
T ss_pred EcccccceEEEEecccCCc
Confidence 7777776655555554443
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.27 E-value=1.4 Score=34.77 Aligned_cols=46 Identities=9% Similarity=-0.025 Sum_probs=35.9
Q ss_pred CCcCcEEEEeCCCCCHHHHHHHHHHHHHc--CC-ceEEEechhHHHHHH
Q 047555 243 DKITKAVVTVPAYFNDSQRTATKDAGRIA--GL-EVLRIINEPTAASLA 288 (593)
Q Consensus 243 ~~~~~~viTVPa~~~~~~r~~l~~Aa~~A--Gl-~~v~li~Ep~AAal~ 288 (593)
.++..+++.++..=.+..++.+.++.+.. ++ +.+.+.+...+|..+
T Consensus 66 ~~i~~i~~GlAG~~~~~~~~~l~~~l~~~~~~~~~~v~v~nDa~~Al~~ 114 (117)
T d2ch5a2 66 VPLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIAT 114 (117)
T ss_dssp CCBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHH
T ss_pred ccccEEEEEeeccCcchhHHHHHHHHHHHCCCCCceEEEeccHHHHHhh
Confidence 35667899999877888888898887665 55 578889988887664
|
| >d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=92.13 E-value=0.2 Score=42.58 Aligned_cols=19 Identities=37% Similarity=0.291 Sum_probs=16.5
Q ss_pred eEEEEEcCccceEEEEEEC
Q 047555 113 KVVGIDLGTTNSAVAAMEG 131 (593)
Q Consensus 113 ~vVGIDfGTt~s~va~~~~ 131 (593)
.+||||.|.+++++++..+
T Consensus 1 m~I~iD~Gy~nvK~a~~~~ 19 (157)
T d2zgya1 1 MLVFIDDGSTNIKLQWQES 19 (157)
T ss_dssp CEEEEEECSSEEEEEEECS
T ss_pred CEEEEecCCCcEEEEEecC
Confidence 3799999999999998753
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=90.27 E-value=0.083 Score=46.19 Aligned_cols=41 Identities=15% Similarity=0.146 Sum_probs=29.6
Q ss_pred CceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHH
Q 047555 296 NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRV 341 (593)
Q Consensus 296 ~~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l 341 (593)
+..++|+|+|||+|.+++++ ++.+.. ..+.++|.-.+.+.|
T Consensus 2 e~~~lviDIGGGStEli~~~--~~~i~~---~~Sl~lG~vrl~e~f 42 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGK--GYKVRE---VISLPIGIVNLTETF 42 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEE--TTEEEE---EEEECCCHHHHHHHH
T ss_pred CCCEEEEEeCCChHhhEEee--CCceee---EEEeecceEEeeccc
Confidence 46789999999999999886 332211 233688988877665
|
| >d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Escherichia coli [TaxId: 562]
Probab=86.89 E-value=0.18 Score=43.57 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=28.2
Q ss_pred ceEEEEeeCCceEEEEEEEEcCCEEEEEEecCCCCccHHHHHHHH
Q 047555 297 ETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRV 341 (593)
Q Consensus 297 ~~vlVvD~GggT~Dvsv~~~~~~~~~vl~~~~~~~lGG~~id~~l 341 (593)
...||+|+|||+|.+++++ ++.... ..+.++|.-.+.+.+
T Consensus 2 gr~Lv~DIGGGStEl~~~~--~~~~~~---~~Sl~lG~vrl~e~~ 41 (177)
T d1u6za3 2 GRKLVIDIGGGSTELVIGE--NFEPIL---VESRRMGCVSFAQLY 41 (177)
T ss_dssp SCEEEEEECSSCEEEEEEE--TTEEEE---EEEESCCHHHHHHHH
T ss_pred CCEEEEEeCCChhheEEEE--CCcEeE---EEEeccceEEeeccc
Confidence 3579999999999999775 333221 224689988776655
|
| >d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylmannosamine kinase NanK species: Escherichia coli [TaxId: 562]
Probab=83.69 E-value=0.84 Score=38.65 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCChHhHHHHHHhHhCC-------CCCCCCCChhHHHhHHHHH
Q 047555 411 EELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTRIPAVQELVKKMTGK-------DPNVTVNPDEVVALGAAVQ 483 (593)
Q Consensus 411 e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~g~-------~v~~~~~p~~aVA~GAal~ 483 (593)
.++++...+.+...+..++.-. +++.|+|-|+.+..+.+.+.+++.+.. ++....-.+++.+.|||++
T Consensus 92 ~~i~~~~~~~la~~l~~l~~~l-----dP~~IvlgG~i~~~~~~~~~i~~~~~~~~~~~~~~I~~s~l~~~a~~~GAA~l 166 (170)
T d2aa4a2 92 QQLIHRSARTLARLIADIKATT-----DCQCVVVGGSVGLAEGYLALVETYLAQEPAAFHVDLLAAHYRHDAGLLGAALL 166 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----CCSEEEEEHHHHTSTTHHHHHHHHHTTSCGGGCCEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhheE-----CCCEEEEeChhhhhhhHHHHHHHHHHhccCCCCCeEEecCCCCcHHHHHHHHH
Confidence 4445555555555555555543 477899888876666666667666532 2333445567899999998
Q ss_pred hh
Q 047555 484 GG 485 (593)
Q Consensus 484 a~ 485 (593)
|.
T Consensus 167 A~ 168 (170)
T d2aa4a2 167 AQ 168 (170)
T ss_dssp HH
T ss_pred HC
Confidence 75
|
| >d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ROK domain: N-acetylglucosamine kinase species: Thermotoga maritima [TaxId: 2336]
Probab=83.37 E-value=1.5 Score=36.89 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCeEEEEeCCCC-hHhHHHHHHhHhC--------CCCCCCCCChhHHHhHH
Q 047555 410 FEELCSDLLDRLKKPVETALRDAKLSFNDLDEVILVGGSTR-IPAVQELVKKMTG--------KDPNVTVNPDEVVALGA 480 (593)
Q Consensus 410 ~e~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~-~p~l~~~l~~~~g--------~~v~~~~~p~~aVA~GA 480 (593)
..++++...+.+...+..++.-. +++.|+|-|+.++ .+.+.+.|++.+. .++......+.+.++||
T Consensus 80 a~~~~~~~~~~la~~l~n~~~~~-----dPe~IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~s~~~~~a~~~GA 154 (169)
T d2hoea2 80 VKEYFDDIARYFSIGLLNLIHLF-----GISKIVIGGFFKELGENFLKKIKIEVETHLLYKHSVDMSFSKVQEPVIAFGA 154 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----CCCEEEEEEGGGGGHHHHHHHHHHHHHHHCSSSCCCEEEECCCCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----CCCEEEEeChHHhchHHHHHHHHHHHHHhcCCCCCCEEEECCCCCCHHHHHH
Confidence 34555555555555555555554 3778999999886 4666666665552 12233445678999999
Q ss_pred HHHhh
Q 047555 481 AVQGG 485 (593)
Q Consensus 481 al~a~ 485 (593)
|+++.
T Consensus 155 a~~~~ 159 (169)
T d2hoea2 155 AVHAL 159 (169)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
|