Citrus Sinensis ID: 047561

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
MEKEESSSSFSTGKSAQEGALPYVPDCYVIPSSHRPNMAPEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIKN
ccccccccccccHHHHHHccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEEccccccccccccccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccEEEEEEcccccccccccccccccccccccEEEEcccccEEEEEcccccEEEcccccccEEEEEccEEEEEEcccccccccEEEEcccccEEEEEEEEcccccccEEccccccccccccccccccHHHHHHHHHHccccccccccccccccc
cccccccccccHHHHHHHccccccccccEcccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEEcEEEEEccccccHHHHEEEEccccccccHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccEEEEEccccccccccEcccccccccccEEEEEEcccccEEEEEcccEEEEcccccccEEEEEcHHHHHHcccccccccEEEcccccccEEEEEEEEccccccEccccHHHcccccccccccccHHHHHHHHHHcccccccccHHHEEccc
mekeessssfstgksaqegalpyvpdcyvipsshrpnmapeaayvpiidfgrlnegreQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGAlstafdffklpseekmkfmsgdvhrpvrystslkdgidEIQFWRVILKHYahpldhwidfwpknppnyrenmgKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMavncyppcpqpdislglpphsdytcLTIVlqsspgleildtedgswkmvpKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELvdeknpkgykessFRDFLNFlskndlaegksfidtlkikn
mekeessssfstgksaqegalpyVPDCYVIPSSHRPNMAPEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMkfmsgdvhrpvrYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAilnrgstriSLASLHSLGMDEKMETAKElvdeknpkgykeSSFRDFLNFLSkndlaegksfidtlkikn
MekeessssfsTGKSAQEGALPYVPDCYVIPSSHRPNMAPEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIKN
********************LPYVPDCYVIPSS****MAPEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLA********************************DFLNFLS******************
********************LPYVPDCYVIP**********A**VPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKM**********VRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIK*
****************QEGALPYVPDCYVIPSSHRPNMAPEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIKN
********SFSTGKSAQEGALPYVPDCYVIPSSHRPNMAPEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIKN
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MEKEESSSSFSTGKSAQEGALPYVPDCYVIPSSHRPNMAPEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIKN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
P24397344 Hyoscyamine 6-dioxygenase N/A no 0.883 0.904 0.317 2e-44
Q39224358 Protein SRG1 OS=Arabidops no no 0.943 0.927 0.327 5e-44
Q06942364 Naringenin,2-oxoglutarate N/A no 0.730 0.706 0.355 4e-42
Q40062339 2'-deoxymugineic-acid 2'- N/A no 0.903 0.938 0.319 1e-41
O04706365 Gibberellin 20 oxidase 1- N/A no 0.897 0.865 0.325 7e-41
O04705361 Gibberellin 20 oxidase 1- N/A no 0.906 0.883 0.322 2e-40
O04707365 Gibberellin 20 oxidase 1- N/A no 0.897 0.865 0.322 2e-40
Q40061338 Mugineic-acid 3-dioxygena N/A no 0.840 0.875 0.344 8e-40
Q05965357 Naringenin,2-oxoglutarate N/A no 0.730 0.719 0.329 4e-39
Q9ZWQ9335 Flavonol synthase/flavano N/A no 0.835 0.877 0.316 2e-38
>sp|P24397|HY6H_HYONI Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1 Back     alignment and function desciption
 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 174/331 (52%), Gaps = 20/331 (6%)

Query: 24  VPDCYVIPSSHRPNM-APEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNH 82
           V + ++ P   R     P    VPIID       ++   +++++I  AC   G FQ++NH
Sbjct: 13  VSESFIAPLQKRAEKDVPVGNDVPIIDL------QQHHHLLVQQITKACQDFGLFQVINH 66

Query: 83  GICQSILDGALSTAFDFFKLPSEEKMKFM----SGDVHRPVRYSTSL-----KDGIDEIQ 133
           G  + ++   +    +FF LP+EEK KF     +     P+     L     +   +E  
Sbjct: 67  GFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFL 126

Query: 134 FWRVILKHYAHPLDH-WIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKY 192
           +W+  L H  HPLD   ++ WP+ P  YRE + KY  E RKL + ++  I E LGL   Y
Sbjct: 127 YWKDTLAHGCHPLDQDLVNSWPEKPAKYREVVAKYSVEVRKLTMRMLDYICEGLGLKLGY 186

Query: 193 LVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTEDGSWKM 252
             N++ + +Q+M  N YPPCP P  +LG   H D   +T++ Q  PGL+ L  +D +W  
Sbjct: 187 FDNELSQ-IQMMLTNYYPPCPDPSSTLGSGGHYDGNLITLLQQDLPGLQQLIVKDATWIA 245

Query: 253 VPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKEL 312
           V  + ++  V++G  L+V++N +++  +HR + +    R+S+A+L        +E AKEL
Sbjct: 246 VQPIPTAFVVNLGLTLKVITNEKFEGSIHRVVTDPTRDRVSIATLIGPDYSCTIEPAKEL 305

Query: 313 VDEKNPKGYKESSFRDFLN-FLS-KNDLAEG 341
           +++ NP  YK  S+ +F + +LS K+D   G
Sbjct: 306 LNQDNPPLYKPYSYSEFADIYLSDKSDYDSG 336

Hyoscyamus niger (taxid: 4079)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 1
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|Q06942|FL3H_MALDO Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q40062|IDS3_HORVU 2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3 Back     alignment and function description
>sp|O04706|GAO1B_WHEAT Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1 Back     alignment and function description
>sp|O04705|GAO1D_WHEAT Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1 Back     alignment and function description
>sp|O04707|GAO1A_WHEAT Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1 Back     alignment and function description
>sp|Q40061|IDS2_HORVU Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1 Back     alignment and function description
>sp|Q05965|FL3H_MATIN Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWQ9|FLS_CITUN Flavonol synthase/flavanone 3-hydroxylase OS=Citrus unshiu GN=FLS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
224057964352 predicted protein [Populus trichocarpa] 0.997 0.997 0.735 1e-157
255539915355 Hyoscyamine 6-dioxygenase, putative [Ric 0.982 0.974 0.702 1e-149
225455004355 PREDICTED: hyoscyamine 6-dioxygenase [Vi 0.994 0.985 0.698 1e-148
147839753418 hypothetical protein VITISV_033210 [Viti 0.994 0.837 0.695 1e-147
449458399354 PREDICTED: hyoscyamine 6-dioxygenase-lik 0.988 0.983 0.647 1e-135
38260641356 Fe2+ dioxygenase-like [Capsella rubella] 0.997 0.985 0.635 1e-129
38260607361 Fe2+ dioxygenase-like [Sisymbrium irio] 0.997 0.972 0.617 1e-127
38260659356 Fe2+ dioxygenase-like [Olimarabidopsis p 0.997 0.985 0.616 1e-126
38196012361 Fe2+ dioxygenase-like protein [Brassica 0.997 0.972 0.603 1e-126
38260674366 Fe2+ dioxygenase-like [Arabidopsis areno 0.997 0.959 0.602 1e-123
>gi|224057964|ref|XP_002299412.1| predicted protein [Populus trichocarpa] gi|222846670|gb|EEE84217.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  560 bits (1442), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 258/351 (73%), Positives = 302/351 (86%)

Query: 1   MEKEESSSSFSTGKSAQEGALPYVPDCYVIPSSHRPNMAPEAAYVPIIDFGRLNEGREQR 60
           MEK++SSSSF+ G SAQE +  YVPDCYVIPSS+RP++ PE A VP+IDF RL +   QR
Sbjct: 1   MEKKDSSSSFTIGNSAQERSWSYVPDCYVIPSSNRPSLTPETANVPVIDFSRLRQDATQR 60

Query: 61  SMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVR 120
           +  IKEIGNAC ++GFFQIVNHGICQSILDGALS A DFFKLP+EEK+KFMS DV +PVR
Sbjct: 61  ANAIKEIGNACHQVGFFQIVNHGICQSILDGALSVASDFFKLPTEEKVKFMSNDVKKPVR 120

Query: 121 YSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMS 180
           Y TSLKDG D+ QFWRV LKHYAHPL  WI  WPKNPP+YRENMGKYC E RKLALE+M 
Sbjct: 121 YGTSLKDGDDKFQFWRVFLKHYAHPLSDWIHLWPKNPPHYRENMGKYCKEVRKLALEVMG 180

Query: 181 AITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGL 240
           AI ESLGLGP YL N+M++GMQVMAVNCYPPCP P+++LGLPPHSDYTCL+IVLQ+S GL
Sbjct: 181 AINESLGLGPGYLSNQMEDGMQVMAVNCYPPCPNPELALGLPPHSDYTCLSIVLQNSAGL 240

Query: 241 EILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSL 300
           E++D  +G WK++P++  +LQVH+GDHLEVLSNG YKSVVHRAILN   TRIS+ASLHS+
Sbjct: 241 EVIDKREGKWKLIPEVHGALQVHIGDHLEVLSNGLYKSVVHRAILNSERTRISIASLHSM 300

Query: 301 GMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIK 351
           GMDEKM TA+ELVD+++PK YKESSFRDFL+FL KND+AEGK+FID LKIK
Sbjct: 301 GMDEKMGTAEELVDDQHPKNYKESSFRDFLDFLCKNDIAEGKNFIDKLKIK 351

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255539915|ref|XP_002511022.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] gi|223550137|gb|EEF51624.1| Hyoscyamine 6-dioxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225455004|ref|XP_002279001.1| PREDICTED: hyoscyamine 6-dioxygenase [Vitis vinifera] gi|297744990|emb|CBI38582.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147839753|emb|CAN77294.1| hypothetical protein VITISV_033210 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449458399|ref|XP_004146935.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis sativus] gi|449525289|ref|XP_004169650.1| PREDICTED: hyoscyamine 6-dioxygenase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|38260641|gb|AAR15457.1| Fe2+ dioxygenase-like [Capsella rubella] Back     alignment and taxonomy information
>gi|38260607|gb|AAR15425.1| Fe2+ dioxygenase-like [Sisymbrium irio] Back     alignment and taxonomy information
>gi|38260659|gb|AAR15474.1| Fe2+ dioxygenase-like [Olimarabidopsis pumila] Back     alignment and taxonomy information
>gi|38196012|gb|AAR13692.1| Fe2+ dioxygenase-like protein [Brassica oleracea] Back     alignment and taxonomy information
>gi|38260674|gb|AAR15488.1| Fe2+ dioxygenase-like [Arabidopsis arenosa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
TAIR|locus:2183429340 KUOX1 "KAR-UP oxidoreductase 1 0.778 0.805 0.648 6.3e-110
TAIR|locus:2042356357 AT2G44800 [Arabidopsis thalian 0.926 0.913 0.489 3.3e-86
TAIR|locus:2081962357 AT3G60290 [Arabidopsis thalian 0.943 0.929 0.483 2.4e-85
TAIR|locus:2040575366 AT2G36690 [Arabidopsis thalian 0.931 0.896 0.396 1.1e-64
TAIR|locus:2153924341 DMR6 "DOWNY MILDEW RESISTANT 6 0.875 0.903 0.382 7.8e-55
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.914 0.922 0.352 1.9e-53
TAIR|locus:2127686348 AT4G10490 [Arabidopsis thalian 0.911 0.922 0.350 1.9e-51
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.846 0.832 0.347 6.4e-44
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 0.857 0.836 0.350 8.1e-44
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.857 0.829 0.344 9.3e-43
TAIR|locus:2183429 KUOX1 "KAR-UP oxidoreductase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 979 (349.7 bits), Expect = 6.3e-110, Sum P(2) = 6.3e-110
 Identities = 181/279 (64%), Positives = 221/279 (79%)

Query:    79 IVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVI 138
             IVNHGI Q+ILD AL  A  FF+LP++EK +FMS DV+ PVRYSTSLKDG+D IQFWR+ 
Sbjct:    62 IVNHGINQNILDDALEVANSFFELPAKEKKQFMSNDVYAPVRYSTSLKDGLDTIQFWRIF 121

Query:   139 LKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMD 198
             LKHYAHPL  WI  WP+NPP YRE MGK+C E RKL++ELM AITESLGLG  YL ++MD
Sbjct:   122 LKHYAHPLHRWIHLWPENPPGYREKMGKFCEEVRKLSIELMGAITESLGLGRDYLSSRMD 181

Query:   199 E-GMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLEILDTE----DGSWKMV 253
             E GMQVM VNCYPPCP P+ +LGLPPHSDY+C+T++LQ+  GL+I D       G W  V
Sbjct:   182 ENGMQVMTVNCYPPCPDPETALGLPPHSDYSCITLLLQNLDGLKIFDPMAHGGSGRWVGV 241

Query:   254 PKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELV 313
             P++   L+VH+GDH+EVLSNG YKS+VH+  LN   TRISLASLHSLGMD+KM   +ELV
Sbjct:   242 PQVTGVLKVHIGDHVEVLSNGLYKSIVHKVTLNEEKTRISLASLHSLGMDDKMSVPRELV 301

Query:   314 DEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIKN 352
             +++NP  YKESSF DFL+FL KND+++G  FIDTL+IK+
Sbjct:   302 NDENPVRYKESSFNDFLDFLVKNDISQGDRFIDTLRIKD 340
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0080167 "response to karrikin" evidence=IEP
TAIR|locus:2042356 AT2G44800 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081962 AT3G60290 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040575 AT2G36690 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153924 DMR6 "DOWNY MILDEW RESISTANT 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127686 AT4G10490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.766
4th Layer4.2.1.78LOW CONFIDENCE prediction!
3rd Layer4.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000705
hypothetical protein (352 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
PLN02904357 PLN02904, PLN02904, oxidoreductase 1e-134
PLN02947374 PLN02947, PLN02947, oxidoreductase 1e-106
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-88
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 3e-70
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 9e-64
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 1e-63
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 5e-60
PLN02216357 PLN02216, PLN02216, protein SRG1 5e-56
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 1e-51
PLN02704335 PLN02704, PLN02704, flavonol synthase 6e-50
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 7e-47
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 2e-45
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 2e-44
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 4e-42
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-41
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 1e-41
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 6e-41
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 7e-36
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-34
PLN02485329 PLN02485, PLN02485, oxidoreductase 3e-30
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 5e-30
pfam14226113 pfam14226, DIOX_N, non-haem dioxygenase in morphin 6e-25
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 7e-24
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 3e-23
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 4e-22
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-18
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 4e-17
PLN03176120 PLN03176, PLN03176, flavanone-3-hydroxylase; Provi 4e-11
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information 
 Score =  386 bits (993), Expect = e-134
 Identities = 173/359 (48%), Positives = 234/359 (65%), Gaps = 10/359 (2%)

Query: 1   MEKEESSS---SFSTGKSAQEGALPYVPDCYVIPSSHRPNMAPEAAY----VPIIDFGRL 53
           ME+   S    SF++  +     +P+VPD YV+P S RP +          +P+ID   L
Sbjct: 1   MEETNKSVLDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLL 60

Query: 54  NEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSG 113
           ++    RS VI EI  AC   GFFQ++NHGI  S++  AL  A  FF LP +EKM  +S 
Sbjct: 61  HDPL-LRSCVIHEIEMACKGFGFFQVINHGIPSSVVKDALDAATRFFDLPVDEKMLLVSD 119

Query: 114 DVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENMGKYCTEERK 173
           +VH PVRY TSL    D + +WR  +KHY+HPL  WI+ WP NPP Y+E +GKY      
Sbjct: 120 NVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYKEKVGKYAEATHV 179

Query: 174 LALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIV 233
           L  +L+ AI+ESLGL   YL  +++EG QVMAVNCYP CP+P+I+LG+PPHSD+  LTI+
Sbjct: 180 LHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTIL 239

Query: 234 LQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRIS 293
           LQSS GL+I+D  + +W  VP ++ +L V +GD +EV+SNG YKSVVHR  +N+   R+S
Sbjct: 240 LQSSQGLQIMD-CNKNWVCVPYIEGALIVQLGDQVEVMSNGIYKSVVHRVTVNKDYKRLS 298

Query: 294 LASLHSLGMDEKMETAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIKN 352
            ASLHSL + +K+  A ELV+E  P  Y E SF DFL+++S ND+ + + FIDTLK  N
Sbjct: 299 FASLHSLPLHKKISPAPELVNENKPAAYGEFSFNDFLDYISSNDITQER-FIDTLKKNN 356

Length = 357
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178720 PLN03176, PLN03176, flavanone-3-hydroxylase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
PLN02904357 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN02216357 protein SRG1 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02704335 flavonol synthase 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02997325 flavonol synthase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.89
PLN03176120 flavanone-3-hydroxylase; Provisional 99.84
PF14226116 DIOX_N: non-haem dioxygenase in morphine synthesis 99.84
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.4
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 96.03
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 95.58
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 87.82
TIGR02466201 conserved hypothetical protein. This family consis 80.64
>PLN02904 oxidoreductase Back     alignment and domain information 
Probab=100.00  E-value=2.2e-79  Score=580.71  Aligned_cols=344  Identities=49%  Similarity=0.915  Sum_probs=296.4

Q ss_pred             CCCccchhhhhhhcCCCCCCCCCCCCCCCCCCCC----CCCCCccEEeCCCCCCChhHHHHHHHHHHHHHHhcCeEEEEe
Q 047561            6 SSSSFSTGKSAQEGALPYVPDCYVIPSSHRPNMA----PEAAYVPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVN   81 (352)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~p~~y~~~~~~~~~~~----~~~~~iPvIDls~l~~~~~~r~~~~~~l~~A~~~~Gff~l~n   81 (352)
                      +--|+++++.+++.|..+||+.|++|++++|...    ....+||+|||+.+.+ +..|..++++|.+||++||||||+|
T Consensus         9 ~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~-~~~r~~~~~~l~~Ac~~~GFf~v~n   87 (357)
T PLN02904          9 LDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHD-PLLRSCVIHEIEMACKGFGFFQVIN   87 (357)
T ss_pred             hhccccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCC-chhHHHHHHHHHHHHHHCceEEEEe
Confidence            3468999999999999999999999999988541    1235799999998863 4567788999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhcCCCHHHHcccccCCCCCccccccccCCCCcchhhHHHHHhhcCCCCCccCCCCCCCCchhH
Q 047561           82 HGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYR  161 (352)
Q Consensus        82 hGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~gy~~~~~~~~e~~~~~~~~~~~~~~p~~~~~n~wP~~~p~fr  161 (352)
                      |||+.++++++++.+++||+||.|+|+++.......+.||.............|+++......|.....|.||+.+|.||
T Consensus        88 HGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~~~~n~WP~~~p~fr  167 (357)
T PLN02904         88 HGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLSKWINLWPSNPPCYK  167 (357)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcccccccCcccchHHH
Confidence            99999999999999999999999999998754333444554322212222223333322223343345789999899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhcccccceEeeecCCCCCCCCCCCCCCccCCCceEEEecCCCcce
Q 047561          162 ENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMDEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSSPGLE  241 (352)
Q Consensus       162 ~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~~~GLq  241 (352)
                      +.+++|+++|.+|+..||++||++||+++++|.+.+....+.||++|||+|+.++..+|+++|||+|+||||+|+.+|||
T Consensus       168 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~qd~~GLQ  247 (357)
T PLN02904        168 EKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQSSQGLQ  247 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEecCCCeee
Confidence            99999999999999999999999999999999998887777899999999998888999999999999999999889999


Q ss_pred             eeeCCCCceEEcCCCCCeEEEEeCcchhhhhCCcccCccceeecCCCCceeEEEeccCCCCCCeeecchhhcCCCCCCCC
Q 047561          242 ILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKMETAKELVDEKNPKGY  321 (352)
Q Consensus       242 v~~~~~g~W~~V~p~~g~lvVn~Gd~l~~~SnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~~i~p~~~~~~~~~~~~y  321 (352)
                      |+. ++|+|+.|+|.||++|||+||+||+||||+||||+|||+.++..+||||+||++|+.|+.|+|+++++++++|++|
T Consensus       248 V~~-~~g~Wi~V~p~pgalVVNiGD~Le~~TNG~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~Pl~~~v~~~~p~~Y  326 (357)
T PLN02904        248 IMD-CNKNWVCVPYIEGALIVQLGDQVEVMSNGIYKSVVHRVTVNKDYKRLSFASLHSLPLHKKISPAPELVNENKPAAY  326 (357)
T ss_pred             EEe-CCCCEEECCCCCCeEEEEccHHHHHHhCCeeeccCCcccCCCCCCEEEEEEeecCCCCCeEeCCHHHcCCCCCCcC
Confidence            987 7899999999999999999999999999999999999998878899999999999999999999999999999999


Q ss_pred             CCcCHHHHHHHHHhCCcCcccccccccccCC
Q 047561          322 KESSFRDFLNFLSKNDLAEGKSFIDTLKIKN  352 (352)
Q Consensus       322 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  352 (352)
                      ++++++||++++.+++..+ ++.++.+|+.|
T Consensus       327 ~~~~~~ey~~~~~~~~~~~-~~~~~~~~~~~  356 (357)
T PLN02904        327 GEFSFNDFLDYISSNDITQ-ERFIDTLKKNN  356 (357)
T ss_pred             CCCCHHHHHHHHHhcccCc-chHHHHhccCC
Confidence            9999999999777775666 88899998865

>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02216 protein SRG1 Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PLN03176 flavanone-3-hydroxylase; Provisional Back     alignment and domain information
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>TIGR02466 conserved hypothetical protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 8e-36
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 9e-36
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 2e-34
1w9y_A319 The Structure Of Acc Oxidase Length = 319 3e-31
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 2e-19
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 2e-06
2bjs_A325 Isopenicillin N Synthase C-Terminal Truncation Muta 2e-04
1ips_A331 Isopenicillin N Synthase From Aspergillus Nidulans 3e-04
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (371), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 136/258 (52%), Gaps = 9/258 (3%)
Query: 45  VPIIDFGRLNEGREQ-RSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLP 103
           VP ID   +    E+ R   I+E+  A    G   ++NHGI   +++       +FF L 
Sbjct: 47  VPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLS 106
Query: 104 SEEKMKFMSGDVHRPVR-YSTSLKDGIDEIQFWRVILKHYAHPLDHW-IDFWPKNPPNYR 161
            EEK K+ +      ++ Y + L +       W     H A+P +   +  WPK P +Y 
Sbjct: 107 VEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI 166
Query: 162 ENMGKYCTEERKLALELMSAITESLGLGPKYL---VNKMDEGMQVMAVNCYPPCPQPDIS 218
           E   +Y    R LA ++  A++  LGL P  L   V  ++E +  M +N YP CPQP+++
Sbjct: 167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELA 226
Query: 219 LGLPPHSDYTCLTIVLQS-SPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYK 277
           LG+  H+D + LT +L +  PGL++    +G W     +  S+ +H+GD LE+LSNG+YK
Sbjct: 227 LGVEAHTDVSALTFILHNMVPGLQLF--YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYK 284
Query: 278 SVVHRAILNRGSTRISLA 295
           S++HR ++N+   RIS A
Sbjct: 285 SILHRGLVNKEKVRISWA 302
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant Length = 325 Back     alignment and structure
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Manganese Complex) Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 1e-123
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 1e-111
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 2e-71
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 5e-68
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 4e-65
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 2e-62
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
 Score =  358 bits (922), Expect = e-123
 Identities = 96/345 (27%), Positives = 166/345 (48%), Gaps = 23/345 (6%)

Query: 24  VPDCYVIPSSHRPNM--------APEAAYVPIIDFGRLNEG-REQRSMVIKEIGNACSRL 74
           +P  Y+ P     ++          +   VP ID   +     + R   I+E+  A    
Sbjct: 18  IPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDW 77

Query: 75  GFFQIVNHGICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVR-YSTSLKDGIDEIQ 133
           G   ++NHGI   +++       +FF L  EEK K+ +      ++ Y + L +      
Sbjct: 78  GVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQL 137

Query: 134 FWRVILKHYAHPLDHW-IDFWPKNPPNYRENMGKYCTEERKLALELMSAITESLGLGPKY 192
            W     H A+P +   +  WPK P +Y E   +Y    R LA ++  A++  LGL P  
Sbjct: 138 EWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDR 197

Query: 193 LVNKM---DEGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQSS-PGLEILDTEDG 248
           L  ++   +E +  M +N YP CPQP+++LG+  H+D + LT +L +  PGL++    +G
Sbjct: 198 LEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFY--EG 255

Query: 249 SWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKM-E 307
            W     +  S+ +H+GD LE+LSNG+YKS++HR ++N+   RIS A       D+ + +
Sbjct: 256 KWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLK 315

Query: 308 TAKELVDEKNPKGYKESSFRDFLNFLSKNDLAEGKSFIDTLKIKN 352
              E+V  ++P  +   +F   +    ++ L  GK   + +  KN
Sbjct: 316 PLPEMVSVESPAKFPPRTFAQHI----EHKL-FGKEQEELVSEKN 355
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 95.06
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 90.29
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 89.78
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 87.91
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 86.72
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 83.78
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
Probab=100.00  E-value=2.6e-76  Score=561.11  Aligned_cols=326  Identities=28%  Similarity=0.541  Sum_probs=283.1

Q ss_pred             chhhhhhhcCCCCCCCCCCCCCCCCCCCCC----C----CCCccEEeCCCCCC-ChhHHHHHHHHHHHHHHhcCeEEEEe
Q 047561           11 STGKSAQEGALPYVPDCYVIPSSHRPNMAP----E----AAYVPIIDFGRLNE-GREQRSMVIKEIGNACSRLGFFQIVN   81 (352)
Q Consensus        11 ~~~~~~~~~~~~~~p~~y~~~~~~~~~~~~----~----~~~iPvIDls~l~~-~~~~r~~~~~~l~~A~~~~Gff~l~n   81 (352)
                      +++..+++.+..+||+.|++|+++++..+.    .    ..+||||||+.+.. +++.|.+++++|.+||+++|||||+|
T Consensus         5 ~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~n   84 (356)
T 1gp6_A            5 ERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLIN   84 (356)
T ss_dssp             CCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             ccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeC
Confidence            457888898999999999999988875332    1    34699999999873 45567889999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHhcCCCHHHHcccccCCC-CCccccccccCC-CCcchhhHHHHHhhcCCCC-CccCCCCCCCCc
Q 047561           82 HGICQSILDGALSTAFDFFKLPSEEKMKFMSGDV-HRPVRYSTSLKD-GIDEIQFWRVILKHYAHPL-DHWIDFWPKNPP  158 (352)
Q Consensus        82 hGi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~-~~~~gy~~~~~~-~~e~~~~~~~~~~~~~~p~-~~~~n~wP~~~p  158 (352)
                      |||+.++++++++.+++||+||.|+|+++..... ....||...... ..+..+|.+.+..... |. ....|.||+.++
T Consensus        85 HGi~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~-p~~~~~~~~wP~~~~  163 (356)
T 1gp6_A           85 HGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAY-PEEKRDLSIWPKTPS  163 (356)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEE-SGGGCCGGGSCCSST
T ss_pred             CCCCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecC-CccccccccCCCcch
Confidence            9999999999999999999999999999987543 356788764321 2234566665443221 22 135689999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhc---ccccceEeeecCCCCCCCCCCCCCCccCCCceEEEec
Q 047561          159 NYRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMD---EGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQ  235 (352)
Q Consensus       159 ~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q  235 (352)
                      .||+.+++|++.|.+|+.+||++|+++||+++++|.+.+.   ...+.+|++|||+|+.++..+|+++|||+|+||||+|
T Consensus       164 ~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~q  243 (356)
T 1gp6_A          164 DYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH  243 (356)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCCeEEEEEE
Confidence            9999999999999999999999999999999999999887   4667899999999998888899999999999999999


Q ss_pred             CC-CcceeeeCCCCceEEcCCCCCeEEEEeCcchhhhhCCcccCccceeecCCCCceeEEEeccCCCCCC-eeecchhhc
Q 047561          236 SS-PGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDE-KMETAKELV  313 (352)
Q Consensus       236 ~~-~GLqv~~~~~g~W~~V~p~~g~lvVn~Gd~l~~~SnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~-~i~p~~~~~  313 (352)
                      |. +||||+  ++|+|++|+|.||++|||+||+||+||||+|+||.|||+.+++.+|||++||++|+.|+ +|.|+++++
T Consensus       244 d~v~GLQV~--~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~~i~pl~~~~  321 (356)
T 1gp6_A          244 NMVPGLQLF--YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMV  321 (356)
T ss_dssp             CSCCCEEEE--ETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGC
T ss_pred             cCCCCeEEe--cCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEEeecCCCCCcEEeCChhhc
Confidence            98 999996  48999999999999999999999999999999999999998888999999999999999 999999999


Q ss_pred             CCCCCCCCCCcCHHHHHH-HHHhCCcCc
Q 047561          314 DEKNPKGYKESSFRDFLN-FLSKNDLAE  340 (352)
Q Consensus       314 ~~~~~~~y~~~~~~e~~~-~~~~~~~~~  340 (352)
                      ++++|++|+++|++||+. ++.++ +++
T Consensus       322 ~~~~p~~y~~~t~~eyl~~~~~~~-~d~  348 (356)
T 1gp6_A          322 SVESPAKFPPRTFAQHIEHKLFGK-EQE  348 (356)
T ss_dssp             CSSSCCSSCCEEHHHHHHHHHHHH-HHH
T ss_pred             CCCCCccCCCccHHHHHHHHHHhc-cCc
Confidence            999999999999999998 45555 554
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 352
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-58
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 1e-57
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 1e-45
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 4e-40
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

 Score =  189 bits (481), Expect = 2e-58
 Identities = 91/311 (29%), Positives = 146/311 (46%), Gaps = 15/311 (4%)

Query: 45  VPIIDFGRLNEGREQRSMVIKEIGNACSRLGFFQIVNHGICQSILDGALSTAFDFFKLPS 104
            PII   ++N    +R+  ++ I +AC   GFF++VNHGI + ++D         +K   
Sbjct: 3   FPIISLDKVNG--VERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCM 60

Query: 105 EEKMKFMSGDVHRPVRYSTSLKDGIDEIQFWRVILKHYAHPLDHWIDFWPKNPPNYRENM 164
           E++ K +          +       +   F +       H     I   P     YRE M
Sbjct: 61  EQRFKELVASKALEGVQAEVTDMDWESTFFLK-------HLPISNISEVPDLDEEYREVM 113

Query: 165 GKYCTEERKLALELMSAITESLGLGPKYLVNK---MDEGMQVMAVNCYPPCPQPDISLGL 221
             +     KLA EL+  + E+LGL   YL N             V+ YPPCP+PD+  GL
Sbjct: 114 RDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGL 173

Query: 222 PPHSDYTCLTIVLQSSPGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVH 281
             H+D   + ++ Q      +   +DG W  VP M+ S+ V++GD LEV++NG+YKSV+H
Sbjct: 174 RAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMH 233

Query: 282 RAILNRGSTRISLASLHSLGMDEKMETAKELVD---EKNPKGYKESSFRDFLNFLSKNDL 338
           R I  +   R+SLAS ++ G D  +  A  LV+   E+N + Y +  F D++   +    
Sbjct: 234 RVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKF 293

Query: 339 AEGKSFIDTLK 349
              +   + +K
Sbjct: 294 QAKEPRFEAMK 304
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 87.3
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 85.99
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.4e-74  Score=544.43  Aligned_cols=317  Identities=29%  Similarity=0.572  Sum_probs=271.5

Q ss_pred             hhhhhhhcCCCCCCCCCCCCCCCCCCC--------CCCCCCccEEeCCCCC-CChhHHHHHHHHHHHHHHhcCeEEEEeC
Q 047561           12 TGKSAQEGALPYVPDCYVIPSSHRPNM--------APEAAYVPIIDFGRLN-EGREQRSMVIKEIGNACSRLGFFQIVNH   82 (352)
Q Consensus        12 ~~~~~~~~~~~~~p~~y~~~~~~~~~~--------~~~~~~iPvIDls~l~-~~~~~r~~~~~~l~~A~~~~Gff~l~nh   82 (352)
                      -+++++++|..+||++|++|+.++|..        +....+||||||+.+. +++..|++++++|.+||+++|||||+||
T Consensus         5 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nH   84 (349)
T d1gp6a_           5 RVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINH   84 (349)
T ss_dssp             CHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             chHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEcc
Confidence            368899999999999999999998865        3446689999999997 4566788999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHhcCCCHHHHcccccCCCCCccc-cccccCCC-CcchhhHHHHHhhcCCCC-CccCCCCCCCCch
Q 047561           83 GICQSILDGALSTAFDFFKLPSEEKMKFMSGDVHRPVR-YSTSLKDG-IDEIQFWRVILKHYAHPL-DHWIDFWPKNPPN  159 (352)
Q Consensus        83 Gi~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~~g-y~~~~~~~-~e~~~~~~~~~~~~~~p~-~~~~n~wP~~~p~  159 (352)
                      ||+.++++++++++++||+||.|+|+++........++ |....... ....++.+.. .....+. ....|.||+..+.
T Consensus        85 GI~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~wp~~~~~  163 (349)
T d1gp6a_          85 GIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYF-FHLAYPEEKRDLSIWPKTPSD  163 (349)
T ss_dssp             SCCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEE-EEEEESGGGCCGGGSCCSSTT
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhh-cccccccccccccccccccch
Confidence            99999999999999999999999999998653333332 33221111 1122222111 1111111 2456899999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhc---ccccceEeeecCCCCCCCCCCCCCCccCCCceEEEecC
Q 047561          160 YRENMGKYCTEERKLALELMSAITESLGLGPKYLVNKMD---EGMQVMAVNCYPPCPQPDISLGLPPHSDYTCLTIVLQS  236 (352)
Q Consensus       160 fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~---~~~~~lrl~~Yp~~~~~~~~~~~~~HtD~~~lTlL~q~  236 (352)
                      |++.+.+|++.|.+++..|+++++++||+++++|.+.+.   ...+.+|++|||+++.+...+|+++|||+|+||||+|+
T Consensus       164 f~e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g~lTlL~q~  243 (349)
T d1gp6a_         164 YIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHN  243 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCSSEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCcceEEEecc
Confidence            999999999999999999999999999999999988774   34567999999999998889999999999999999999


Q ss_pred             C-CcceeeeCCCCceEEcCCCCCeEEEEeCcchhhhhCCcccCccceeecCCCCceeEEEeccCCCCCCee-ecchhhcC
Q 047561          237 S-PGLEILDTEDGSWKMVPKMQSSLQVHVGDHLEVLSNGRYKSVVHRAILNRGSTRISLASLHSLGMDEKM-ETAKELVD  314 (352)
Q Consensus       237 ~-~GLqv~~~~~g~W~~V~p~~g~lvVn~Gd~l~~~SnG~~~s~~HRV~~~~~~~R~Si~~F~~p~~d~~i-~p~~~~~~  314 (352)
                      . +||||+  .+|+|++|+|.+|++|||+||+||+||||+|+||+|||+.+++++||||+||++|+.|++| +|+++|++
T Consensus       244 ~~~GLqv~--~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~HRVv~~~~~~R~Si~~F~~p~~d~~i~~pl~~~v~  321 (349)
T d1gp6a_         244 MVPGLQLF--YEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVS  321 (349)
T ss_dssp             SCCCEEEE--ETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEEEEECCTTTCEECCCGGGCC
T ss_pred             CCcceeee--cCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcCccccCCCCCCeEEEEEEecCCCcceeecCCHHHcC
Confidence            9 999995  4799999999999999999999999999999999999999888899999999999999875 89999999


Q ss_pred             CCCCCCCCCcCHHHHHH
Q 047561          315 EKNPKGYKESSFRDFLN  331 (352)
Q Consensus       315 ~~~~~~y~~~~~~e~~~  331 (352)
                      ++.|++|+++|++||++
T Consensus       322 ~~~p~~y~~~t~~e~~~  338 (349)
T d1gp6a_         322 VESPAKFPPRTFAQHIE  338 (349)
T ss_dssp             SSSCCSSCCEEHHHHHH
T ss_pred             CCCCCCCCCccHHHHHH
Confidence            99999999999999999
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure