Citrus Sinensis ID: 047565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100------
Protein Sequence
MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDDLARK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHccccEEEEEEcccEEEccccccccccEEEEEEEcccEEEEEEEcccccEEEEEEEcEEEEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHccHHHHcccccHHHHHEEEEcccEEEEEEcccEccccccEEEccccEEEEEcccccEEEEEEHEEcccccHHHHHHHHHHHHHcccHHHcc
Coil and Loop (DISEMBL)
mpaghglrsrtrdlfarpfrkkgyiplstylrtykigdyvdvkvngavhkgmphkfyhgrtgrvWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLcelpddlark
Flexible Loop (DISEMBL)
mpaghglrsrtrdlfarpfrkkgyiplstylrtyKIGDYVDVKVNGAVHKgmphkfyhgrtgrvWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDDLARK
Low Complexity Region (SEG)
MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDDLARK
Disordered region (IsUnstruct)
*************LFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELP******
Disordered Region (DISOPRED)
************D****PFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDDL***
Disordered Region (DISEMBL)
**********TRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDDLARK
Disordered Region (DISPRO)
********SRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDDL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCELPDDLARK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	106	2.2.26 [Sep-21-2011]
Q43291	164	60S ribosomal protein L21	yes	no	0.754	0.487	0.887	1e-39
Q9FDZ9	164	60S ribosomal protein L21	yes	no	0.754	0.487	0.887	2e-39
Q54X53	160	60S ribosomal protein L21	yes	no	0.754	0.5	0.675	3e-26
O82574	161	60S ribosomal protein L21	N/A	no	0.764	0.503	0.691	1e-25
Q02753	160	60S ribosomal protein L21	yes	no	0.754	0.5	0.625	1e-23
O42706	160	60S ribosomal protein L21	yes	no	0.754	0.5	0.637	2e-23
Q9UUC1	160	60S ribosomal protein L21	yes	no	0.754	0.5	0.637	2e-23
Q12672	160	60S ribosomal protein L21	yes	no	0.754	0.5	0.612	2e-23
P46778	160	60S ribosomal protein L21	yes	no	0.764	0.506	0.604	3e-22
O09167	160	60S ribosomal protein L21	yes	no	0.764	0.506	0.604	4e-22

>sp|Q43291|RL211_ARATH 60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2

 Score =  161 bits (407), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 71/80 (88%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1  MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGR+WNVTKRA+GVE+NKQ+
Sbjct: 61 TGRIWNVTKRAVGVEVNKQI 80

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDZ9|RL212_ARATH 60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/80 (88%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct: 1  MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGR+WNVTKRA+GVE+NKQ+
Sbjct: 61 TGRIWNVTKRAVGVEVNKQI 80

Arabidopsis thaliana (taxid: 3702)

>sp|Q54X53|RL21_DICDI 60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 65/80 (81%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MP   GLR+RTR LF+R FR  G +  +T+LRT+++GDYVD+K  G VHKGMPHKFYHGR
Sbjct: 1  MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVT RA+GV INK+V
Sbjct: 61 TGRVWNVTPRAVGVIINKRV 80

Dictyostelium discoideum (taxid: 44689)

>sp|O82574|RL21_CYAPA 60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/81 (69%), Positives = 65/81 (80%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MP  +G R+RTR LFAR F+  G + LSTYL  +KIG+YVDV  N AVHKGMP K+YHGR
Sbjct: 1  MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TG VWNVTKRAIGVEINK+V+
Sbjct: 61 TGIVWNVTKRAIGVEINKRVR 81

Cyanophora paradoxa (taxid: 2762)

>sp|Q02753|RL21A_YEAST 60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21A PE=1 SV=1

 Score =  108 bits (269), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 61/80 (76%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1  MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TG V+NVTK ++GV INK V
Sbjct: 61 TGVVYNVTKSSVGVIINKMV 80

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O42706|RL21B_SCHPO 60S ribosomal protein L21-B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl21b PE=2 SV=2

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 64/80 (80%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct: 1  MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TG V+NVT+ ++GV I K V
Sbjct: 61 TGVVYNVTQSSVGVLIYKVV 80

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9UUC1|RL21A_SCHPO 60S ribosomal protein L21-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl21a PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 64/80 (80%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct: 1  MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TG V+NVT+ ++GV I K V
Sbjct: 61 TGVVYNVTQSSVGVLIYKVV 80

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12672|RL21B_YEAST 60S ribosomal protein L21-B OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPL21B PE=1 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 49/80 (61%), Positives = 61/80 (76%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   HG RSRTR +F R FRK G + +STYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1  MGKSHGYRSRTRYMFQRDFRKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TG V+NVTK ++GV INK V
Sbjct: 61 TGVVYNVTKSSVGVIINKMV 80

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P46778|RL21_HUMAN 60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2

 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 61/81 (75%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M    G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct: 1  MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60

Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TGRV+NVT+ A+G+ +NKQVK
Sbjct: 61 TGRVYNVTQHAVGIVVNKQVK 81

Homo sapiens (taxid: 9606)

>sp|O09167|RL21_MOUSE 60S ribosomal protein L21 OS=Mus musculus GN=Rpl21 PE=2 SV=3

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 61/81 (75%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M    G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct: 1  MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60

Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TGRV+NVT+ A+G+ +NKQVK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVK 81

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
212721970	104	hypothetical protein [Zea mays] gi|19469	0.933	0.951	0.828	5e-41
218184700	353	hypothetical protein OsI_33947 [Oryza sa	0.764	0.229	0.925	7e-41
413934092	90	hypothetical protein ZEAMMB73_659156 [Ze	0.811	0.955	0.941	1e-39
238010746	164	unknown [Zea mays] gi|413934091|gb|AFW68	0.754	0.487	0.987	1e-39
195643296	165	60S ribosomal protein L21 [Zea mays]	0.754	0.484	0.987	1e-39
242034227	164	hypothetical protein SORBIDRAFT_01g01984	0.754	0.487	0.987	2e-39
195641182	164	60S ribosomal protein L21 [Zea mays]	0.754	0.487	0.987	2e-39
212722474	164	uncharacterized protein LOC100192783 [Ze	0.754	0.487	0.987	2e-39
414871137	164	TPA: 60S ribosomal protein L21 [Zea mays	0.754	0.487	0.975	2e-39
297721793	164	Os03g0141000 [Oryza sativa Japonica Grou	0.754	0.487	0.975	3e-39

>gi|212721970|ref|NP_001132586.1| hypothetical protein [Zea mays] gi|194694824|gb|ACF81496.1| unknown [Zea mays] gi|195627294|gb|ACG35477.1| hypothetical protein [Zea mays] gi|414871136|tpg|DAA49693.1| TPA: hypothetical protein ZEAMMB73_911723 [Zea mays]

 Score =  171 bits (433), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/99 (82%), Positives = 86/99 (86%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQVKFFMPFLFDSFRCIYLCEL 99
          TGRVWNVTKRAIGVE+NKQV    PF  ++     L  L
Sbjct: 61 TGRVWNVTKRAIGVEVNKQVDNADPFFAEAITISALAHL 99

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218184700|gb|EEC67127.1| hypothetical protein OsI_33947 [Oryza sativa Indica Group]

 Score =  171 bits (432), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 75/81 (92%), Positives = 81/81 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLR+RTRDLFARPFRKKGYIPL+TYLRTYKIG++VDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGEHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TGRVWNVTKRAIGVEINKQ++
Sbjct: 61 TGRVWNVTKRAIGVEINKQLQ 81

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413934092|gb|AFW68643.1| hypothetical protein ZEAMMB73_659156 [Zea mays]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 81/86 (94%), Positives = 82/86 (95%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQVKFFMPF 86
          TGRVWNVTKRAIGVEINKQV    PF
Sbjct: 61 TGRVWNVTKRAIGVEINKQVYHTDPF 86

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238010746|gb|ACR36408.1| unknown [Zea mays] gi|413934091|gb|AFW68642.1| 60S ribosomal protein L21 [Zea mays]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/80 (98%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVTKRAIGVEINKQV
Sbjct: 61 TGRVWNVTKRAIGVEINKQV 80

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195643296|gb|ACG41116.1| 60S ribosomal protein L21 [Zea mays]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 79/80 (98%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVTKRAIGVEINKQV
Sbjct: 61 TGRVWNVTKRAIGVEINKQV 80

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242034227|ref|XP_002464508.1| hypothetical protein SORBIDRAFT_01g019840 [Sorghum bicolor] gi|241918362|gb|EER91506.1| hypothetical protein SORBIDRAFT_01g019840 [Sorghum bicolor]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/80 (98%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVTKRAIGVEINKQV
Sbjct: 61 TGRVWNVTKRAIGVEINKQV 80

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195641182|gb|ACG40059.1| 60S ribosomal protein L21 [Zea mays]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/80 (98%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVTKRAIGVEINKQV
Sbjct: 61 TGRVWNVTKRAIGVEINKQV 80

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212722474|ref|NP_001131449.1| uncharacterized protein LOC100192783 [Zea mays] gi|194691550|gb|ACF79859.1| unknown [Zea mays] gi|195619922|gb|ACG31791.1| 60S ribosomal protein L21 [Zea mays] gi|195636958|gb|ACG37947.1| 60S ribosomal protein L21 [Zea mays] gi|414864748|tpg|DAA43305.1| TPA: 60S ribosomal protein L21 [Zea mays]

 Score =  166 bits (420), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 79/80 (98%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVTKRAIGVEINKQV
Sbjct: 61 TGRVWNVTKRAIGVEINKQV 80

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414871137|tpg|DAA49694.1| TPA: 60S ribosomal protein L21 [Zea mays]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/80 (97%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVTKRAIGVE+NKQV
Sbjct: 61 TGRVWNVTKRAIGVEVNKQV 80

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297721793|ref|NP_001173260.1| Os03g0141000 [Oryza sativa Japonica Group] gi|108706108|gb|ABF93903.1| 60S ribosomal protein L21, putative, expressed [Oryza sativa Japonica Group] gi|125542345|gb|EAY88484.1| hypothetical protein OsI_09955 [Oryza sativa Indica Group] gi|125584866|gb|EAZ25530.1| hypothetical protein OsJ_09354 [Oryza sativa Japonica Group] gi|255674192|dbj|BAH91988.1| Os03g0141000 [Oryza sativa Japonica Group]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 78/80 (97%), Positives = 80/80 (100%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLR+RTRDLFARPFRKKGYIPL+TYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVTKRAIGVEINKQV
Sbjct: 61 TGRVWNVTKRAIGVEINKQV 80

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	106
TAIR|locus:2012275	164	AT1G09590 [Arabidopsis thalian	0.754	0.487	0.887	6.1e-39
TAIR|locus:2024387	164	AT1G09690 [Arabidopsis thalian	0.754	0.487	0.887	6.1e-39
TAIR|locus:2206480	164	AT1G57660 [Arabidopsis thalian	0.754	0.487	0.887	6.1e-39
TAIR|locus:2009410	164	AT1G57860 [Arabidopsis thalian	0.754	0.487	0.887	6.1e-39
DICTYBASE|DDB_G0279387	160	rpl21 "S60 ribosomal protein L	0.754	0.5	0.675	9.4e-27
FB|FBgn0032987	159	RpL21 "Ribosomal protein L21"	0.764	0.509	0.604	5.3e-24
POMBASE|SPAC959.08	160	rpl2102 "60S ribosomal protein	0.754	0.5	0.637	8.7e-24
POMBASE|SPBC365.03c	160	rpl2101 "60S ribosomal protein	0.754	0.5	0.637	8.7e-24
SGD|S000000395	160	RPL21A "Ribosomal 60S subunit	0.754	0.5	0.625	8.7e-24
RGD|1562469	160	RGD1562469 "similar to ribosom	0.716	0.475	0.644	1.1e-23

TAIR|locus:2012275 AT1G09590 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 71/80 (88%), Positives = 80/80 (100%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct:     1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQV 80
             TGR+WNVTKRA+GVE+NKQ+
Sbjct:    61 TGRIWNVTKRAVGVEVNKQI 80

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2024387 AT1G09690 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 71/80 (88%), Positives = 80/80 (100%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct:     1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQV 80
             TGR+WNVTKRA+GVE+NKQ+
Sbjct:    61 TGRIWNVTKRAVGVEVNKQI 80

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2206480 AT1G57660 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 71/80 (88%), Positives = 80/80 (100%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct:     1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQV 80
             TGR+WNVTKRA+GVE+NKQ+
Sbjct:    61 TGRIWNVTKRAVGVEVNKQI 80

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

TAIR|locus:2009410 AT1G57860 [Arabidopsis thaliana (taxid:3702)]

 Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
 Identities = 71/80 (88%), Positives = 80/80 (100%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MPAGHG+R+RTRDLFARPFRKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGR
Sbjct:     1 MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQV 80
             TGR+WNVTKRA+GVE+NKQ+
Sbjct:    61 TGRIWNVTKRAVGVEVNKQI 80

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

DICTYBASE|DDB_G0279387 rpl21 "S60 ribosomal protein L21" [Dictyostelium discoideum (taxid:44689)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 54/80 (67%), Positives = 65/80 (81%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MP   GLR+RTR LF+R FR  G +  +T+LRT+++GDYVD+K  G VHKGMPHKFYHGR
Sbjct:     1 MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query:    61 TGRVWNVTKRAIGVEINKQV 80
             TGRVWNVT RA+GV INK+V
Sbjct:    61 TGRVWNVTPRAVGVIINKRV 80

GO:0009617 "response to bacterium" evidence=IEP

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

FB|FBgn0032987 RpL21 "Ribosomal protein L21" [Drosophila melanogaster (taxid:7227)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 49/81 (60%), Positives = 65/81 (80%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             M    G R  TRD+F+RPFRK G IPLSTY+R +KIGD VD+K +GAV KG+P+K YHG+
Sbjct:     1 MTNSKGYRRGTRDMFSRPFRKHGVIPLSTYMRVFKIGDIVDIKGHGAVQKGLPYKAYHGK 60

Query:    61 TGRVWNVTKRAIGVEINKQVK 81
             TGR++NVT+ A+GV +NK+V+
Sbjct:    61 TGRIFNVTQHAVGVIVNKRVR 81

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005811 "lipid particle" evidence=IDA

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005840 "ribosome" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0051298 "centrosome duplication" evidence=IMP

POMBASE|SPAC959.08 rpl2102 "60S ribosomal protein L21 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 51/80 (63%), Positives = 64/80 (80%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct:     1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query:    61 TGRVWNVTKRAIGVEINKQV 80
             TG V+NVT+ ++GV I K V
Sbjct:    61 TGVVYNVTQSSVGVLIYKVV 80

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

POMBASE|SPBC365.03c rpl2101 "60S ribosomal protein L21 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 51/80 (63%), Positives = 64/80 (80%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             MP  +G+R+RTR  F R FR+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+
Sbjct:     1 MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query:    61 TGRVWNVTKRAIGVEINKQV 80
             TG V+NVT+ ++GV I K V
Sbjct:    61 TGVVYNVTQSSVGVLIYKVV 80

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

SGD|S000000395 RPL21A "Ribosomal 60S subunit protein L21A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 50/80 (62%), Positives = 61/80 (76%)

Query:     1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
             M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct:     1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query:    61 TGRVWNVTKRAIGVEINKQV 80
             TG V+NVTK ++GV INK V
Sbjct:    61 TGVVYNVTKSSVGVIINKMV 80

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=TAS

GO:0002181 "cytoplasmic translation" evidence=TAS

RGD|1562469 RGD1562469 "similar to ribosomal protein L21" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 49/76 (64%), Positives = 61/76 (80%)

Query:     6 GLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVW 65
             G R  TR +F+RPFRK G +PL+TY+RTYK GD VD+K  G V KGMPHK YHG+TGRV+
Sbjct:     6 GKRRGTRYMFSRPFRKHGVVPLATYMRTYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVY 65

Query:    66 NVTKRAIGVEINKQVK 81
             NVT+ A+G+ +NKQVK
Sbjct:    66 NVTQHAVGIIVNKQVK 81

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FDZ9	RL212_ARATH	No assigned EC number	0.8875	0.7547	0.4878	yes	no
Q43291	RL211_ARATH	No assigned EC number	0.8875	0.7547	0.4878	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsI_33947 Putative uncharacterized protein (369 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	106
PLN00190	158	PLN00190, PLN00190, 60S ribosomal protein L21; Pro	1e-55
PTZ00189	160	PTZ00189, PTZ00189, 60S ribosomal protein L21; Pro	4e-46
pfam01157	99	pfam01157, Ribosomal_L21e, Ribosomal protein L21e	6e-35
COG2139	98	COG2139, RPL21A, Ribosomal protein L21E [Translati	1e-29
PRK04306	98	PRK04306, PRK04306, 50S ribosomal protein L21e; Re	8e-21

>gnl|CDD|177784 PLN00190, PLN00190, 60S ribosomal protein L21; Provisional

 Score =  169 bits (430), Expect = 1e-55
 Identities = 72/80 (90%), Positives = 79/80 (98%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKVGDYVDIKVNGAIHKGMPHKFYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TG VWNVTKRA+GVE+NKQV
Sbjct: 61 TGIVWNVTKRAVGVEVNKQV 80

Length = 158

>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional

 Score =  145 bits (368), Expect = 4e-46
 Identities = 52/81 (64%), Positives = 66/81 (81%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MP  +G R+ TR  FA+PFRK G   LSTYL T+K+GDYVD+ V+ AVHKGMP+K+YHGR
Sbjct: 1  MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TGRV+NVT RA+GV +NK+V+
Sbjct: 61 TGRVFNVTPRAVGVIVNKRVR 81

Length = 160

>gnl|CDD|110179 pfam01157, Ribosomal_L21e, Ribosomal protein L21e

 Score =  114 bits (288), Expect = 6e-35
 Identities = 51/80 (63%), Positives = 64/80 (80%)

Query: 2  PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRT 61
          P  +G R  TR +F RPFRK G  PLSTYLR YK+GDYVD+K+NG+V KGMPHK +HG+T
Sbjct: 1  PNSNGPRRGTRYMFKRPFRKHGLSPLSTYLREYKVGDYVDIKINGSVQKGMPHKRFHGKT 60

Query: 62 GRVWNVTKRAIGVEINKQVK 81
          GRV+NVT  A+GV +NK+V+
Sbjct: 61 GRVYNVTPGAVGVAVNKKVR 80

Length = 99

>gnl|CDD|225050 COG2139, RPL21A, Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]

 Score =  101 bits (254), Expect = 1e-29
 Identities = 35/76 (46%), Positives = 47/76 (61%)

Query: 2  PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRT 61
             HG RSRTR    +  R++G  PLS YL+ YK+GD V + ++ +VHKGMPH  + G+T
Sbjct: 1  KRSHGYRSRTRYKLQKDPRERGLSPLSRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKT 60

Query: 62 GRVWNVTKRAIGVEIN 77
          G V  V  RA  VE+ 
Sbjct: 61 GTVVGVRGRAYKVEVY 76

Length = 98

>gnl|CDD|235275 PRK04306, PRK04306, 50S ribosomal protein L21e; Reviewed

 Score = 79.1 bits (196), Expect = 8e-21
 Identities = 32/77 (41%), Positives = 47/77 (61%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   HG RS+TR   ++  R++G  PLS  L+ ++ GD V + ++ +VHKGMPH  +HG+
Sbjct: 2  MKKSHGFRSKTRKKLSKSPRERGLSPLSRALQEFEEGDKVHIVIDPSVHKGMPHPRFHGK 61

Query: 61 TGRVWNVTKRAIGVEIN 77
          TG V     RA  VE+ 
Sbjct: 62 TGTVVGKRGRAYIVEVK 78

Length = 98

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	106
PLN00190	158	60S ribosomal protein L21; Provisional	100.0
PTZ00189	160	60S ribosomal protein L21; Provisional	100.0
PRK04306	98	50S ribosomal protein L21e; Reviewed	100.0
PF01157	99	Ribosomal_L21e: Ribosomal protein L21e; InterPro:	100.0
COG2139	98	RPL21A Ribosomal protein L21E [Translation, riboso	100.0
KOG1732	160	consensus 60S ribosomal protein L21 [Translation,	99.97
PRK01191	120	rpl24p 50S ribosomal protein L24P; Validated	84.39
PF09629	71	YorP: YorP protein; InterPro: IPR018591 This entry	82.33

>PLN00190 60S ribosomal protein L21; Provisional

Probab=100.00  E-value=4.6e-46  Score=279.18  Aligned_cols=88  Identities=82%  Similarity=1.332  Sum_probs=86.4

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (106)
Q Consensus         1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V   80 (106)
                      |++|+|+|++||+||||+||+||++|||+||++|++||+|||++|||+||||||++|||+||+|||++++||||+|||+|
T Consensus         1 M~~s~G~R~~TR~~fsk~~R~~G~~pls~~l~~yk~GD~VdIk~~~svqKGMPhk~YHGkTG~V~nv~~~A~gV~V~K~v   80 (158)
T PLN00190          1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTKRAVGVEVNKQV   80 (158)
T ss_pred             CCCCCCccccchhhhCccccccCCCcHHHHHHHhcCCCEEEEEecCCeecCCCcccccCCCeEEEeecCcEEEEEEEEee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeceee
Q 047565           81 KFFMPFLF   88 (106)
Q Consensus        81 ~gk~~~~~   88 (106)
                      +|||+++-
T Consensus        81 ggr~~~Kr   88 (158)
T PLN00190         81 GNRIIRKR   88 (158)
T ss_pred             CCeEeeEE
Confidence            99998873

>PTZ00189 60S ribosomal protein L21; Provisional

Probab=100.00  E-value=4.4e-46  Score=279.74  Aligned_cols=88  Identities=59%  Similarity=0.935  Sum_probs=86.6

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (106)
Q Consensus         1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V   80 (106)
                      |++|+|+|++||+||||+||+||++|||+||++|++||+|||++|||+||||||++|||+||+|||++++||||+|||+|
T Consensus         1 M~~s~G~R~~TR~~fsk~~R~~G~~pls~~l~~yk~GD~VdIk~d~svqkGMPhk~YHGkTG~V~nv~~~A~gViV~k~v   80 (160)
T PTZ00189          1 MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRV   80 (160)
T ss_pred             CCCCCCccccchhhhCccccccCCCcHHHHHHHccCCCEEEEEecCCeecCCCcccccCCCeEEEeecCeEEEEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeceee
Q 047565           81 KFFMPFLF   88 (106)
Q Consensus        81 ~gk~~~~~   88 (106)
                      +||||++-
T Consensus        81 g~ki~~Kr   88 (160)
T PTZ00189         81 RGRIVRKR   88 (160)
T ss_pred             CCEEeeeE
Confidence            99999873

>PRK04306 50S ribosomal protein L21e; Reviewed

Probab=100.00  E-value=2.8e-44  Score=252.06  Aligned_cols=81  Identities=40%  Similarity=0.621  Sum_probs=79.7

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (106)
Q Consensus         1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V   80 (106)
                      |++|+|+|++||++|||+||++|++|||+||++|++||+|||++|||+||||||++|||+||+|+|++++||+|+|  +|
T Consensus         2 M~~s~G~R~~TR~~fsk~~R~~G~~~ls~~l~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v--~v   79 (98)
T PRK04306          2 MKKSHGFRSKTRKKLSKSPRERGLSPLSRALQEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGRAYIVEV--KD   79 (98)
T ss_pred             CCCCCCccccchhhhCcCccccCCCcHHHHHHhccCCCEEEEEecCceecCCccccccCCCEEEEeecCeEEEEEE--EE
Confidence            7899999999999999999999999999999999999999999999999999999999999999999999999999  78


Q ss_pred             Cce
Q 047565           81 KFF   83 (106)
Q Consensus        81 ~gk   83 (106)
                      +||
T Consensus        80 g~k   82 (98)
T PRK04306         80 GGK   82 (98)
T ss_pred             CCc
Confidence            898

>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=8.2e-44  Score=249.74  Aligned_cols=87  Identities=59%  Similarity=0.891  Sum_probs=68.4

Q ss_pred             CCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEeceeC
Q 047565            2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVK   81 (106)
Q Consensus         2 ~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V~   81 (106)
                      ++|+|+|++||++|||+||++|++||++||++|++||+|||++|||+||||||++|||+||+|+||+++|+|++++++|+
T Consensus         1 ~~S~G~R~~TR~~fsk~~R~~G~~~ls~~l~~yk~GD~V~I~id~sv~kGmPh~~yHGkTG~V~~v~~~~~G~~~~~~v~   80 (99)
T PF01157_consen    1 TRSKGYRRGTRYKFSKPFRKHGMIPLSTYLQEYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVFNVTKGARGVAYNKQVK   80 (99)
T ss_dssp             -SS-STTTTTHHHHS--CCCTSS--CHHHH----TT-EEEE---TTSSSSS--GGGTTEEEEEEEE-SSCEEEEEEEECS
T ss_pred             CCCCCccCCCchhhcCCCccCCCCcHHHHHHHccCCCEEEEEecCccccCCCcceECCCceeEEEeCCCceEEEEEEEec
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeceee
Q 047565           82 FFMPFLF   88 (106)
Q Consensus        82 gk~~~~~   88 (106)
                      ++++++-
T Consensus        81 ~~~~~K~   87 (99)
T PF01157_consen   81 DRIKEKR   87 (99)
T ss_dssp             SSCEEEE
T ss_pred             CCcccEE
Confidence            9998873

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....

>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.7e-39  Score=226.24  Aligned_cols=83  Identities=42%  Similarity=0.648  Sum_probs=79.1

Q ss_pred             CCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEeceeC
Q 047565            2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVK   81 (106)
Q Consensus         2 ~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V~   81 (106)
                      ++|+|||++||++|+|++||+|.+|+++||++|++||+|+|+||||+||||||++|||+||+|+|++|+||.|+|+  ++
T Consensus         1 ~~S~G~R~~TR~kl~k~~RerG~~plsr~l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~--~G   78 (98)
T COG2139           1 KRSHGYRSRTRYKLQKDPRERGLSPLSRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVY--DG   78 (98)
T ss_pred             CCCccccccchhhhccCccccCCcchhhHHhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEe--cC
Confidence            4799999999999999999999999999999999999999999999999999999999999999999999999999  66


Q ss_pred             ceece
Q 047565           82 FFMPF   86 (106)
Q Consensus        82 gk~~~   86 (106)
                      |+.=.
T Consensus        79 ~k~K~   83 (98)
T COG2139          79 NKEKT   83 (98)
T ss_pred             CceEE
Confidence            77433

>KOG1732 consensus 60S ribosomal protein L21 [Translation, ribosomal structure and biogenesis]

Probab=99.97  E-value=1.5e-32  Score=206.45  Aligned_cols=91  Identities=56%  Similarity=0.879  Sum_probs=88.5

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (106)
Q Consensus         1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V   80 (106)
                      |++++|+|++||++|+++||+||..|+++||+.|++||+|||+++++.||||||++|||+||+|++++++|+||++||||
T Consensus         1 m~~~~g~~~~t~~~~~~~~~k~~~~~l~~y~~i~k~gdivdi~~~~~~~kg~p~k~y~gktgrvy~v~~~a~giv~nKqv   80 (160)
T KOG1732|consen    1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGNGTVQKGMPHKCYHGKTGRVYNVTQHAVGVVVNKQV   80 (160)
T ss_pred             CCcccCcccccceeecchhhhcCeeeeeeeeeeecccceeecccccchhcCCccccccccccceeeccceeEEEEEEEee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeceeecce
Q 047565           81 KFFMPFLFDSF   91 (106)
Q Consensus        81 ~gk~~~~~~~~   91 (106)
                      +||||++-+.-
T Consensus        81 kgKil~KRinV   91 (160)
T KOG1732|consen   81 KGKILAKRINV   91 (160)
T ss_pred             ccceeeeeeee
Confidence            99999986543

>PRK01191 rpl24p 50S ribosomal protein L24P; Validated

Probab=84.39  E-value=1.7  Score=31.74  Aligned_cols=58  Identities=16%  Similarity=0.114  Sum_probs=37.8

Q ss_pred             hccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEec-----eeCceeceeecceeeEEeeecC
Q 047565           33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINK-----QVKFFMPFLFDSFRCIYLCELP  100 (106)
Q Consensus        33 ~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK-----~V~gk~~~~~~~~~~~~~~~~~  100 (106)
                      ..+.||.|-|.--+          |-|++|+|..|...--.|.|..     .-+....+-|+.-.+.+.|-.-
T Consensus        45 ~IkkGD~V~VisG~----------~KGk~GkV~~V~~~~~~V~VeGvn~~k~~G~~~e~pIh~SNV~l~~l~l  107 (120)
T PRK01191         45 PVRKGDTVKVMRGD----------FKGEEGKVVEVDLKRGRIYVEGVTVKKADGTEVPRPIHPSNVMITKLDL  107 (120)
T ss_pred             eEeCCCEEEEeecC----------CCCceEEEEEEEcCCCEEEEeCcEEECCCCeEEEcccchhHeEEEeCcc
Confidence            36789999987654          6699999999976654444432     2234555666666666665433

>PF09629 YorP: YorP protein; InterPro: IPR018591 This entry is represented by Bacteriophage SP-beta, YorP

Probab=82.33  E-value=1.6  Score=29.29  Aligned_cols=31  Identities=32%  Similarity=0.639  Sum_probs=19.4

Q ss_pred             hccCCCEEEEEEcCceecCCCCCcccCcceEEEcc
Q 047565           33 TYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNV   67 (106)
Q Consensus        33 ~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v   67 (106)
                      .|..||.|.|  |....-||||  +-|+-|+|...
T Consensus         6 sY~~~~~VeI--N~NAkyg~P~--~VG~kG~IIe~   36 (71)
T PF09629_consen    6 SYPLGLEVEI--NSNAKYGCPH--HVGRKGKIIEK   36 (71)
T ss_dssp             -S-TT-EEEE---TT-TTTSTT----SSEEEEEEE
T ss_pred             ccCCCCEEEE--cCcccccCcc--ccccccchhhh
Confidence            5889999988  7888899999  45877766543

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. YorP is a 71 residue protein. The structure is of an alpha helix between two of five beta strands. The function is unknown. ; PDB: 2HEQ_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	106
3izr_U	164	Localization Of The Large Subunit Ribosomal Protein		3e-41
3izs_U	160	Localization Of The Large Subunit Ribosomal Protein		9e-25
1s1i_Q	100	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		9e-25
3jyw_Q	116	Structure Of The 60s Proteins For Eukaryotic Riboso		3e-24
2zkr_q	160	Structure Of A Mammalian Ribosomal 60s Subunit With		3e-23
3zf7_U	159	High-resolution Cryo-electron Microscopy Structure		6e-21
4a17_P	157	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-19
3j21_R	97	Promiscuous Behavior Of Proteins In Archaeal Riboso		6e-08

>pdb|3IZR|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 164

Iteration: 1
 Score =  163 bits (412), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 76/80 (95%), Positives = 80/80 (100%)
Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MPAGHGLRSRTRDLFARPFRKKGYIPL+TYLRTYK+G++VDVKVNGAVHKGMPHKFYHGR
Sbjct: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGR 60
Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TGRVWNVTKRAIGVEINKQV
Sbjct: 61 TGRVWNVTKRAIGVEINKQV 80

>pdb|3IZS|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 160

Iteration: 1
 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 61/80 (76%)
Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1  MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TG V+NVTK ++GV INK V
Sbjct: 61 TGVVYNVTKSSVGVIINKMV 80

>pdb|1S1I|Q Chain Q, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 100

Iteration: 1
 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 50/80 (62%), Positives = 61/80 (76%)
Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+
Sbjct: 1  MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TG V+NVTK ++GV INK V
Sbjct: 61 TGVVYNVTKSSVGVIINKMV 80

>pdb|3JYW|Q Chain Q, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 116

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 49/76 (64%), Positives = 60/76 (78%)
Query: 5  HGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRV 64
          HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V
Sbjct: 4  HGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVV 63
Query: 65 WNVTKRAIGVEINKQV 80
          +NVTK ++GV INK V
Sbjct: 64 YNVTKSSVGVIINKMV 79

>pdb|2ZKR|QQ Chain q, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 160

Iteration: 1
 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 49/81 (60%), Positives = 61/81 (75%)
Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M    G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct: 1  MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60
Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TGRV+NVT+ A+G+ +NKQVK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVK 81

>pdb|3ZF7|U Chain U, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 159

Iteration: 1
 Score = 95.5 bits (236), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/81 (58%), Positives = 56/81 (69%)
Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   HG +  TR LFA+ FRK G   +ST L  +K+GDYVDV  + AV  GMPHK+YHGR
Sbjct: 1  MVHSHGYKCGTRHLFAKKFRKHGVPSVSTILTNFKVGDYVDVVADAAVRAGMPHKYYHGR 60
Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TG VWNVT R +GV INK V+
Sbjct: 61 TGIVWNVTPRGVGVIINKPVR 81

>pdb|4A17|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 157

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 61/80 (76%)
Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   +G R +TR  FA+ ++ KG++ +S YL TYK+G+YVD+ V+G+ HKGMP+K YHGR
Sbjct: 1  MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGR 60
Query: 61 TGRVWNVTKRAIGVEINKQV 80
          TG+V+NV  R+IGV +++ V
Sbjct: 61 TGKVFNVNPRSIGVIVHRIV 80

>pdb|3J21|R Chain R, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 97

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 4  GHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGR 63
           H  R +TR   ++  R++G  PL+ +L+ +++G  V + +  + HKGMP   +HGRTG 
Sbjct: 5  AHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGT 64
Query: 64 VWNVTKRAIGVEIN 77
          V      A  VEI 
Sbjct: 65 VVGKRGEAYIVEIK 78

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	106
1vq8_Q	96	50S ribosomal protein L21E; ribosome 50S, protein-	6e-41
2zkr_q	160	60S ribosomal protein L21; protein-RNA complex, 60	2e-35
3izc_U	160	60S ribosomal protein RPL21 (L21E); eukaryotic rib	2e-35
4a17_P	157	RPL21, 60S ribosomal protein L21; eukaryotic ribos	6e-35
3iz5_U	164	60S ribosomal protein L21 (L21E); eukaryotic ribos	9e-34
3jyw_Q	116	60S ribosomal protein L21(A); eukaryotic ribosome,	2e-33

>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ... Length = 96

 Score =  129 bits (327), Expect = 6e-41
 Identities = 22/81 (27%), Positives = 35/81 (43%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          MP+ +G    TR       R +G  P    +  +  G+ V +K++ +V  G  H  + G+
Sbjct: 1  MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQ 60

Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TG V      A  V+I    K
Sbjct: 61 TGTVEGKQGDAYKVDIVDGGK 81

>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 160

 Score =  117 bits (295), Expect = 2e-35
 Identities = 49/81 (60%), Positives = 61/81 (75%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M    G R  TR +F+RPFRK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+
Sbjct: 1  MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGK 60

Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TGRV+NVT+ A+G+ +NKQVK
Sbjct: 61 TGRVYNVTQHAVGIIVNKQVK 81

>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P Length = 157

 Score =  116 bits (292), Expect = 6e-35
 Identities = 41/81 (50%), Positives = 61/81 (75%)

Query: 1  MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60
          M   +G R +TR  FA+ ++ KG++ +S YL TYK+G+YVD+ V+G+ HKGMP+K YHGR
Sbjct: 1  MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGR 60

Query: 61 TGRVWNVTKRAIGVEINKQVK 81
          TG+V+NV  R+IGV +++ V 
Sbjct: 61 TGKVFNVNPRSIGVIVHRIVN 81

>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q Length = 116

 Score =  111 bits (278), Expect = 2e-33
 Identities = 49/77 (63%), Positives = 60/77 (77%)

Query: 5  HGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRV 64
          HG RSRTR +F R FRK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V
Sbjct: 4  HGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVV 63

Query: 65 WNVTKRAIGVEINKQVK 81
          +NVTK ++GV INK V 
Sbjct: 64 YNVTKSSVGVIINKMVG 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	106
1vq8_Q	96	50S ribosomal protein L21E; ribosome 50S, protein-	100.0
3jyw_Q	116	60S ribosomal protein L21(A); eukaryotic ribosome,	100.0
4a17_P	157	RPL21, 60S ribosomal protein L21; eukaryotic ribos	100.0
3iz5_U	164	60S ribosomal protein L21 (L21E); eukaryotic ribos	100.0
3izc_U	160	60S ribosomal protein RPL21 (L21E); eukaryotic rib	100.0
2zkr_q	160	60S ribosomal protein L21; protein-RNA complex, 60	100.0
3j21_R	97	50S ribosomal protein L21E; archaea, archaeal, KIN	100.0

>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...

Probab=100.00  E-value=2.4e-48  Score=270.78  Aligned_cols=85  Identities=26%  Similarity=0.315  Sum_probs=82.6

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (106)
Q Consensus         1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V   80 (106)
                      |++|+|+|++||+||||+||+||++||++||++|++||+|||++|||+||||||+||||+||+|+|++|+||+|+|||+|
T Consensus         1 m~~s~G~R~~TR~~fsr~fR~~G~~pls~~m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~v   80 (96)
T 1vq8_Q            1 MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGG   80 (96)
T ss_dssp             -CCCCSTTTTCTTTTSCCGGGCSSCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETT
T ss_pred             CCCCCCccccchHhhCCCccccCCCCHHHHHHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEeecC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceec
Q 047565           81 KFFMP   85 (106)
Q Consensus        81 ~gk~~   85 (106)
                      +||.|
T Consensus        81 k~Kri   85 (96)
T 1vq8_Q           81 KEKTI   85 (96)
T ss_dssp             EEEEE
T ss_pred             CCcEE
Confidence            99854

>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q

Probab=100.00  E-value=3.6e-48  Score=277.63  Aligned_cols=86  Identities=57%  Similarity=0.903  Sum_probs=84.6

Q ss_pred             CCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEeceeC
Q 047565            2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVK   81 (106)
Q Consensus         2 ~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V~   81 (106)
                      ++|+|+|++||+||||+||+||++||++||++|++||+|||++||+|||||||+|||||||+||||+|+||||+|||||+
T Consensus         1 ~~skG~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~AvgivVnkqv~   80 (116)
T 3jyw_Q            1 GKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVG   80 (116)
T ss_dssp             CCCCSSSSSCHHHHSCCSTTCSSCCSSTTTCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCS
T ss_pred             CCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCcEEEEEEEEEEC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceecee
Q 047565           82 FFMPFL   87 (106)
Q Consensus        82 gk~~~~   87 (106)
                      ||||++
T Consensus        81 gKil~K   86 (116)
T 3jyw_Q           81 NRYLEK   86 (116)
T ss_dssp             SSSCCC
T ss_pred             Ceeeee
Confidence            999877

>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P

Probab=100.00  E-value=1.1e-46  Score=281.12  Aligned_cols=88  Identities=47%  Similarity=0.793  Sum_probs=85.7

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (106)
Q Consensus         1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V   80 (106)
                      |++|+|+|++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||+|+|+||+||+||
T Consensus         1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v   80 (157)
T 4a17_P            1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIV   80 (157)
T ss_dssp             -CCCCCTTTTCHHHHSCCTTCTTCCCHHHHHCCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEE
T ss_pred             CCCCCCCcCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceeceee
Q 047565           81 KFFMPFLF   88 (106)
Q Consensus        81 ~gk~~~~~   88 (106)
                      +||||++-
T Consensus        81 ~gkil~Kr   88 (157)
T 4a17_P           81 NGRYIEKR   88 (157)
T ss_dssp             TTEEEEEE
T ss_pred             CCEeeeeE
Confidence            99998874

>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.3e-46  Score=281.44  Aligned_cols=87  Identities=56%  Similarity=0.915  Sum_probs=83.1

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (106)
Q Consensus         1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V   80 (106)
                      |++|+|+|++||+||||+||+||++||++||++|++||+|||++||||||||||+||||+||+|+||+|+||||+||+||
T Consensus         1 M~~s~G~R~~TR~~fsr~fRk~G~~plst~m~~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v   80 (160)
T 2zkr_q            1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQV   80 (160)
T ss_dssp             ---CCSSSTTCHHHHSCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECC
T ss_pred             CCCCCCccccchHhhCCCccccCCCcHHHHHHHcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Cceecee
Q 047565           81 KFFMPFL   87 (106)
Q Consensus        81 ~gk~~~~   87 (106)
                      +||||++
T Consensus        81 ~~kil~K   87 (160)
T 2zkr_q           81 KGKILAK   87 (160)
T ss_dssp             SSCCSCE
T ss_pred             CCeeeee
Confidence            9999886

>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=8.7e-46  Score=258.18  Aligned_cols=80  Identities=33%  Similarity=0.599  Sum_probs=77.9

Q ss_pred             CCCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEecee
Q 047565            1 MPAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQV   80 (106)
Q Consensus         1 M~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~V   80 (106)
                      |++|+|+|++||+||||+||+||++||++||++|++||+|||++||||||||||+|||||||+||||+|+||+|+||+  
T Consensus         2 m~~s~G~R~~TR~~fsr~fRk~G~~pls~~m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn~--   79 (97)
T 3j21_R            2 VQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKD--   79 (97)
T ss_dssp             -CCSCCSSTTCTTTSCCCTTTCSSCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEE--
T ss_pred             CCCCCCCcCCChhhhcCCccccCCCcHHHHHHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEEe--
Confidence            789999999999999999999999999999999999999999999999999999999999999999999999999997  


Q ss_pred             Cc
Q 047565           81 KF   82 (106)
Q Consensus        81 ~g   82 (106)
                      +|
T Consensus        80 ~g   81 (97)
T 3j21_R           80 GS   81 (97)
T ss_dssp             TT
T ss_pred             CC
Confidence            67

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	106
d1vqoq1	95	b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeo	1e-35

>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L21e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  114 bits (288), Expect = 1e-35
 Identities = 21/80 (26%), Positives = 34/80 (42%)

Query: 2  PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRT 61
          P+ +G    TR       R +G  P    +  +  G+ V +K++ +V  G  H  + G+T
Sbjct: 1  PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQT 60

Query: 62 GRVWNVTKRAIGVEINKQVK 81
          G V      A  V+I    K
Sbjct: 61 GTVEGKQGDAYKVDIVDGGK 80

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	106
d1vqoq1	95	Ribosomal proteins L21e {Archaeon Haloarcula maris	100.0
d2do3a1	62	Transcription elongation factor SPT5 {Human (Homo	81.95

>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal proteins L24p and L21e
domain: Ribosomal proteins L21e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=2.4e-42  Score=238.58  Aligned_cols=78  Identities=26%  Similarity=0.370  Sum_probs=76.5

Q ss_pred             CCCCCCCcccccccCCcccCCCCCchHHHHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEece
Q 047565            2 PAGHGLRSRTRDLFARPFRKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQ   79 (106)
Q Consensus         2 ~~S~G~R~~TR~~fsk~fR~~G~~~ls~~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~   79 (106)
                      |+|+|+|++||++|||+||++|++|+|+||++|++||+|||++|||+||||||++|||+||+|+|++++||+|+|++.
T Consensus         1 p~S~G~R~~TR~~~sk~~R~~G~~~ls~~l~~y~~GD~V~I~idpsv~kGmPh~~yhGkTG~V~~~~g~a~~V~v~~g   78 (95)
T d1vqoq1           1 PSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDG   78 (95)
T ss_dssp             CCCCCTTTTCTTTTSCCGGGCSSCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEET
T ss_pred             CCCCCcCccChHHhccCccccCCCChhhheeeccCCCEEEEEecCCeecCccceeecCCceeEEeecCeEEEEEEecC
Confidence            689999999999999999999999999999999999999999999999999999999999999999999999999965

>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: SPT5 KOW domain-like
domain: Transcription elongation factor SPT5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.95  E-value=0.35  Score=29.27  Aligned_cols=39  Identities=26%  Similarity=0.388  Sum_probs=28.6

Q ss_pred             HHHhccCCCEEEEEEcCceecCCCCCcccCcceEEEcccCCEEEEEEece
Q 047565           30 YLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQ   79 (106)
Q Consensus        30 ~l~~yk~GD~VdIkid~svqKGMPHk~YHGkTG~V~~v~~~AvgV~VnK~   79 (106)
                      +-..|++||-|-+.      .|    +|.|.||-|+.+.+.-+. .+.++
T Consensus         7 LrK~F~~GDhVkVi------~G----~~~g~tGlVV~v~~~~v~-~~SD~   45 (62)
T d2do3a1           7 LRKYFKMGDHVKVI------AG----RFEGDTGLIVRVEENFVI-LFSDL   45 (62)
T ss_dssp             CCSSCCTTCEEEES------SS----TTTTCEEEEEEECSSCEE-EEESS
T ss_pred             heeccCCCCeEEEe------cc----EEcCccEEEEEEeCCEEE-EEeCC
Confidence            34569999999762      33    799999999999877555 44453