Citrus Sinensis ID: 047603

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MTEREIDAESRGRMITAELAILRELAFRRKVFLLRSQHDDGLEKKEKGLAPLQERPTPQSSLCMSPSQIPGPSPPSSSSPRLSGMKRPTPTSTADAECSSPELPESLDSHPEHAIQADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKNRRAENLGSYSGKA
Secondary Structure (PSIPRED)
ccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHccHHHHHHHHHHcccccccccccccccccccEEEEEEEEEcccHHHHHHHHccHHHHHHHHHcccccccccccEEEEEEEEcccHHHHHHHHccHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mtereidaESRGRMITAELAILRELAFRRKVFLLRSqhddglekkekglaplqerptpqsslcmspsqipgpsppssssprlsgmkrptptstadaecsspelpesldshpehaiqadsnfcsichvpcssafnynqhlkgrKHKAKLQELKLDGNSLVKMSLVKVGekqtwcrlcnigfssEELFRLHLNAKKHKALQRAKCtlkgggeqkwcklcdvwcpngdafkmhldGKNHILRLYEIEKnrraenlgsysgka
Flexible Loop (DISEMBL)
mtereidaesrgrmiTAELAILRELAFRRKVFLLrsqhddglekkekglaplqerptpqSSLCMSPSQIPgpsppssssprlsGMKRPTPTSTADAECSSPELPESLDSHPEHAIQADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCtlkgggeqkwCKLCDVWCPNGDAFKMHLDGKNHILRLYEieknrraenlgsysgka
Low Complexity Region (SEG)
MTEREIDAESRGRMITAELAILRELAFRRKVFLLRSQHDDGLEKKEKGLAPLQERPTPQSSLCMspsqipgpsppssssprlsGMKRPTPTSTADAECSSPELPESLDSHPEHAIQADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKNRRAENLGSYSGKA
Disordered region (IsUnstruct)
*************MITAELAILRELAFRRKVFLLR**********************************************************************************DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE***************
Disordered Region (DISOPRED)
*************************************************************************************************************************CSICHVPCSSAFNY**********************************QTWCRLCNIGFSSEELF***************************CKLCDVWCPNGDAFKMHLDG**************************
Disordered Region (DISEMBL)
**********RGRMITAELAILRELAFRRKVFLLRSQHDDGLEKKEKGLAPLQ*********************************************************PEHAIQADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKNRRAE*********
Disordered Region (DISPRO)
***********GRMITAELAILRELAFRRKVFLLRSQHDD*****************************************************************************DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELK***************EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKNR************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTEREIDAESRGRMITAELAILRELAFRRKVFLLRSQHDDGLEKKEKGLAPLQERPTPQSSLCMSPSQIPGPSPPSSSSPRLSGMKRPTPTSTADAECSSPELPESLDSHPEHAIQADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKNRRAENLGSYSGKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	259	2.2.26 [Sep-21-2011]
Q5U231	1065	Zinc finger RNA-binding p	yes	no	0.293	0.071	0.267	6e-07
Q6GPM1	1054	Zinc finger RNA-binding p	N/A	no	0.293	0.072	0.267	6e-07
O88532	1074	Zinc finger RNA-binding p	yes	no	0.258	0.062	0.265	2e-05
Q5REX3	1074	Zinc finger RNA-binding p	yes	no	0.293	0.070	0.255	2e-05
Q96KR1	1074	Zinc finger RNA-binding p	yes	no	0.293	0.070	0.267	3e-05
A2RV29	301	Zinc finger protein 346 O	no	no	0.305	0.262	0.348	8e-05
Q9UPR6	939	Zinc finger RNA-binding p	no	no	0.297	0.082	0.298	9e-05
Q6PCR6	1074	Zinc finger RNA-binding p	no	no	0.305	0.073	0.256	0.0002

>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 44/86 (51%)

Query: 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
           ++C +C + C+    Y +HL+G+KHK K   LK   N+    + V+  + Q  C LC++ 
Sbjct: 331 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTTSSSTAVRGTQNQLRCELCDVS 390

Query: 180 FSSEELFRLHLNAKKHKALQRAKCTL 205
            +  + +  H+   KH+ + +    L
Sbjct: 391 CTGADAYAAHIRGAKHQKVVKLHTKL 416

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA.
Xenopus tropicalis (taxid: 8364)

>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1

 Score = 54.7 bits (130), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 44/86 (51%)

Query: 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
           ++C +C + C+    Y +HL+G+KHK K   LK   N+    + V+  + Q  C LC++ 
Sbjct: 322 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTTSSSTAVRGTQNQLRCELCDVS 381

Query: 180 FSSEELFRLHLNAKKHKALQRAKCTL 205
            +  + +  H+   KH+ + +    L
Sbjct: 382 CTGADAYAAHIRGAKHQKVVKLHTKL 407

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA.

Xenopus laevis (taxid: 8355)

>sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus musculus GN=Zfr PE=1 SV=2

 Score = 50.1 bits (118), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 41/79 (51%)

Query: 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
           ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct: 331 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVS 390

Query: 180 FSSEELFRLHLNAKKHKAL 198
            +  + +  H+   KH+ +
Sbjct: 391 CTGADAYAAHIRGAKHQKV 409

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA. Involved in the nucleocytoplasmic shuttling of STAU2.

Mus musculus (taxid: 10090)

>sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abelii GN=ZFR PE=2 SV=1

 Score = 49.7 bits (117), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 43/86 (50%)

Query: 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
           ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct: 331 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNASSSNNSTRGTQNQLRCELCDVS 390

Query: 180 FSSEELFRLHLNAKKHKALQRAKCTL 205
            +  + +  H+   KH+ + +    L
Sbjct: 391 CTGADAYAAHIRGAKHQKVVKLHTKL 416

Involved in postimplantation and gastrulation stages of development. Involved in the nucleocytoplasmic shuttling of STAU2. Binds to DNA and RNA.

Pongo abelii (taxid: 9601)

>sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 43/86 (50%)

Query: 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
           ++C +C + C+    Y +HL+G+KHK K   LK   N+    S  +  + Q  C LC++ 
Sbjct: 331 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNSSTRGTQNQLRCELCDVS 390

Query: 180 FSSEELFRLHLNAKKHKALQRAKCTL 205
            +  + +  H+   KH+ + +    L
Sbjct: 391 CTGADAYAAHIRGAKHQKVVKLHTKL 416

Involved in postimplantation and gastrulation stages of development. Involved in the nucleocytoplasmic shuttling of STAU2. Binds to DNA and RNA.

Homo sapiens (taxid: 9606)

>sp|A2RV29|ZN346_DANRE Zinc finger protein 346 OS=Danio rerio GN=znf346 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 7/86 (8%)

Query: 114 AIQADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL---DGNSLVKMSLVKVGEKQ 170
           A Q  + FCSIC    ++     QH  G+KHK  + + KL    G S    S V    K 
Sbjct: 174 AEQDPNRFCSICQASFNNPLMAQQHYSGKKHKKHMNKQKLMETFGPSTAPASTV----KG 229

Query: 171 TWCRLCNIGFSSEELFRLHLNAKKHK 196
             C +CNI  +S E ++ H++  KHK
Sbjct: 230 YPCTVCNIELNSVEQYQAHISGSKHK 255

Binds preferentially to dsRNA, but also to RNA-DNA hybrids.

Danio rerio (taxid: 7955)

>sp|Q9UPR6|ZFR2_HUMAN Zinc finger RNA-binding protein 2 OS=Homo sapiens GN=ZFR2 PE=2 SV=3

 Score = 47.4 bits (111), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 10/87 (11%)

Query: 160 KMSLVKVGEKQT---WCRLCNIGFSSEELFRLHLNAKKHKALQRAKCT-------LKGGG 209
           K+   K G +Q    +C +C I  +  + +R HL  +KH+  + A+ T        +G  
Sbjct: 257 KLPRPKAGPRQLQLHYCDICKISCAGPQTYREHLGGQKHRKKEAAQKTGVQPNGSPRGVQ 316

Query: 210 EQKWCKLCDVWCPNGDAFKMHLDGKNH 236
            Q  C LC V C   DA+  H+ G  H
Sbjct: 317 AQLHCDLCAVSCTGADAYAAHIRGSKH 343

Homo sapiens (taxid: 9606)

>sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio GN=zfr PE=2 SV=2

 Score = 46.2 bits (108), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVG---EKQTWCRLC 176
           ++C +C + C+    Y +HL+G+KHK K   LK+  +S             + Q  C LC
Sbjct: 324 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKVSQSSSSSSGGGSSARGTQNQLRCELC 383

Query: 177 NIGFSSEELFRLHLNAKKHKAL 198
           ++  +  + +  H+   KH+ +
Sbjct: 384 DVSCTGADAYAAHIRGAKHQKV 405

Involved in postimplantation and gastrulation stages of development. Binds to DNA and RNA.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
225457321	223	PREDICTED: uncharacterized protein LOC10	0.772	0.896	0.358	3e-22
359491690	238	PREDICTED: uncharacterized protein LOC10	0.853	0.928	0.330	1e-16
351703677	595	Zinc finger RNA-binding protein 2 [Heter	0.413	0.179	0.290	1e-08
226500844	323	uncharacterized protein LOC100277679 [Ze	0.413	0.331	0.290	1e-06
384250223	1114	hypothetical protein COCSUDRAFT_66058 [C	0.474	0.110	0.282	2e-06
357495437	532	Zinc finger RNA-binding protein [Medicag	0.328	0.159	0.346	3e-06
388521031	532	unknown [Medicago truncatula]	0.328	0.159	0.346	3e-06
242096554	601	hypothetical protein SORBIDRAFT_10g02579	0.567	0.244	0.276	3e-06
359494712	824	PREDICTED: uncharacterized protein LOC10	0.378	0.118	0.262	5e-06
125605735	341	hypothetical protein OsJ_29403 [Oryza sa	0.440	0.334	0.305	8e-06

>gi|225457321|ref|XP_002284718.1| PREDICTED: uncharacterized protein LOC100250232 [Vitis vinifera]

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/240 (35%), Positives = 121/240 (50%), Gaps = 40/240 (16%)

Query: 10  SRGRMITAELAILRELAFRRKVFLLRSQHDDGLEKKEKGLAPLQERPTPQSSLCMSPSQI 69
            RG ++  ELA+ RELA+R+KV  L  Q   G+ ++                     + +
Sbjct: 4   GRGEVMPLELAMKRELAYRKKVDRLLLQLHGGVSRE---------------------NPV 42

Query: 70  PGPSPPSSSSPRLSGMKRPTPTSTADAECSSPELPESLDSHPEHAIQADSNFCSICHVPC 129
           P  SP  SS  + SG+KR  PTS+ +  C   ++ + +D       Q D  FC +C VPC
Sbjct: 43  PSSSPRPSSGSKFSGIKRKAPTSSFN--CQPRQMLQPVDHSNTLKTQRDDLFCKVCQVPC 100

Query: 130 SSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQ-TWCRLCNIGFSSEELFRL 188
           S A +  QHL G+KHK +LQ L         M + + G KQ  WC LC I   ++  F+ 
Sbjct: 101 SGANSLKQHLLGQKHKDRLQNLT------PSMGIGEEGAKQRLWCELCKIWCMNKNSFKD 154

Query: 189 HLNAKKHKALQRAKCTLKG--GGE-----QKWCKLCDVWCPNGDAFKMHLDGKNHILRLY 241
           HL  KKH++  +A   L G  GGE      K+CK+C +WC   DAF  HL+ K HIL L+
Sbjct: 155 HLKGKKHQSRAQA-VELHGTDGGEIANQMNKYCKVCKIWCM--DAFNQHLESKRHILNLH 211

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491690|ref|XP_003634307.1| PREDICTED: uncharacterized protein LOC100853199 [Vitis vinifera] gi|297733926|emb|CBI15173.3| unnamed protein product [Vitis vinifera]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 84/254 (33%), Positives = 122/254 (48%), Gaps = 33/254 (12%)

Query: 6   IDAESRGRMITAELAILRELAFRRKVFLLRSQHDDGLEKKEKGLAPLQERPTPQSSLCMS 65
           +D   RG ++  ELA+ RE A+R+KV ++ SQ   G  +++                   
Sbjct: 1   MDDGRRGDVMPLELAMKRESAYRKKVEMMLSQLYGGESRED------------------- 41

Query: 66  PSQIPGPSPPSSSSPRLSGMKRPTPTSTADAECSSPELPESLDSHPEHAIQADSNFCSIC 125
           P     PS   SS P LSG KR TPT T+  +C  P+  + L S      + D  FC +C
Sbjct: 42  PFSSQVPSSSPSSGPSLSGPKRKTPTRTS--QCLPPQQLQLLYSSHTLGNRKDDLFCKVC 99

Query: 126 HVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEEL 185
            V C S+F+  QHL G+KHK  L +LK  G ++ +         + WC LC I   ++  
Sbjct: 100 QVACPSSFHLKQHLIGQKHKDTL-DLK-SGRNIREED----ANTRKWCDLCKIWCINKYS 153

Query: 186 FRLHLNAKKHK-ALQRAKCTLKGGGEQK-----WCKLCDVWCPNGDAFKMHLDGKNHILR 239
              H   KKH+  +Q  +   K G  +      +C+LC +WC +  AF  HL GK HIL 
Sbjct: 154 LEQHFKGKKHQDNVQELELGGKEGQRKTNQVKLYCELCKLWCMDEYAFNQHLKGKKHILN 213

Query: 240 LYEIEKNRRAENLG 253
           L+  E+ R A+  G
Sbjct: 214 LHTFEEKRTAKGKG 227

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351703677|gb|EHB06596.1| Zinc finger RNA-binding protein 2 [Heterocephalus glaber]

 Score = 66.6 bits (161), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 60/124 (48%), Gaps = 17/124 (13%)

Query: 116 QADSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRL 175
           Q   ++C IC V C+    Y +HL G+KH+ K    + DGNSL             +C L
Sbjct: 47  QPQLHYCHICRVSCAGLQTYREHLDGQKHRKKEAAQRPDGNSL-------------YCDL 93

Query: 176 CNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKN 235
           C++  + E+ +  H+   +H+ +    C  +G   +  CKLC     + +A  +HL G+ 
Sbjct: 94  CSVSCTGEDAYDAHIRGARHQKV----CNDQGKVIRYRCKLCQCNFNDRNAKDLHLRGRR 149

Query: 236 HILR 239
           H L+
Sbjct: 150 HRLQ 153

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|226500844|ref|NP_001144654.1| uncharacterized protein LOC100277679 [Zea mays] gi|195645234|gb|ACG42085.1| hypothetical protein [Zea mays]

 Score = 59.7 bits (143), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 10/117 (8%)

Query: 122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFS 181
           C+IC V  +S  N N+HL+G+KH+AKL        +       + G+      L      
Sbjct: 202 CAICQVSATSEANLNEHLQGKKHRAKLARCGATTKATTDPPPNRSGDGAV--ALAAGPSD 259

Query: 182 SEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHIL 238
           + +  ++ ++ + H+ +QR+ C         WC+ C V C N  A   HL GK H L
Sbjct: 260 APKRIQILVDGEAHQVVQRSSCV--------WCERCRVGCTNAAAMVDHLRGKRHSL 308

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|384250223|gb|EIE23703.1| hypothetical protein COCSUDRAFT_66058 [Coccomyxa subellipsoidea C-169]

 Score = 58.9 bits (141), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 15/138 (10%)

Query: 122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFS 181
           C +C +  +S     QHL+GRKH  +L E           +       +  C +C +  S
Sbjct: 237 CEVCDISATSPDLLVQHLQGRKHLRRLAE--------EADAAGARQAAEYPCDVCKVVTS 288

Query: 182 SEELFRLHLNAKKHK---ALQRAKCTLK----GGGEQKWCKLCDVWCPNGDAFKMHLDGK 234
           SEE   +H++ K+H+   A+     +L       GE+  C+LCDV  P+    ++HL G+
Sbjct: 289 SEEQLAVHMDGKRHRKHIAMAEVTSSLTEDTGADGEELHCELCDVTAPSSTHKQIHLRGQ 348

Query: 235 NHILRLYEIEKNRRAENL 252
            H  R  + +    AE L
Sbjct: 349 KHQRREKQEQHLTEAEQL 366

Source: Coccomyxa subellipsoidea C-169

Species: Coccomyxa subellipsoidea

Genus: Coccomyxa

Family: Coccomyxaceae

Class: Trebouxiophyceae

Phylum: Chlorophyta

Superkingdom: Eukaryota

>gi|357495437|ref|XP_003618007.1| Zinc finger RNA-binding protein [Medicago truncatula] gi|355519342|gb|AET00966.1| Zinc finger RNA-binding protein [Medicago truncatula]

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 16/101 (15%)

Query: 110 HPEHAIQADS-NFCSICHVPCSSAFNYNQHLKGRKHKAK------------LQELKLDGN 156
           H E   Q DS   CS C+V C     YN+H+ GRKH AK            + ELK  G+
Sbjct: 329 HSEPKKQVDSVKVCSTCNVVCVGQDTYNKHVAGRKHAAKVALKSNDGIGPSIAELKRKGD 388

Query: 157 SLVKMSL--VKVGEKQTWCRLCNIGFSSEELFRLHLNAKKH 195
           + ++ +   +KV E   WC  C I  +S + +  H++ KKH
Sbjct: 389 APIEKAAKKIKVAES-VWCEFCKINCNSRDSYTAHISGKKH 428

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388521031|gb|AFK48577.1| unknown [Medicago truncatula]

 Score = 58.5 bits (140), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 16/101 (15%)

Query: 110 HPEHAIQADS-NFCSICHVPCSSAFNYNQHLKGRKHKAK------------LQELKLDGN 156
           H E   Q DS   CS C+V C     YN+H+ GRKH AK            + ELK  G+
Sbjct: 329 HSEPKKQVDSVKVCSTCNVVCVGQDTYNKHVAGRKHAAKVALKSNDGIGPSIAELKRKGD 388

Query: 157 SLVKMSL--VKVGEKQTWCRLCNIGFSSEELFRLHLNAKKH 195
           + ++ +   +KV E   WC  C I  +S + +  H++ KKH
Sbjct: 389 APIEKAAKKIKVAES-VWCEFCKINCNSRDSYTAHISGKKH 428

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242096554|ref|XP_002438767.1| hypothetical protein SORBIDRAFT_10g025790 [Sorghum bicolor] gi|241916990|gb|EER90134.1| hypothetical protein SORBIDRAFT_10g025790 [Sorghum bicolor]

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 16/163 (9%)

Query: 77  SSSPRLSGMKRPTPTSTADAECSSPELPESLDSHPEHAIQADSNF-CSICHVPCSSAFNY 135
           SS   +SG+KR    S+A  + +  +   S  + P     A  ++ C++C V  +S    
Sbjct: 176 SSEANVSGVKRKADASSATTKPTKLQNASSATTEPTKLQNAARDWSCALCQVSATSEAGL 235

Query: 136 NQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHL--NAK 193
           NQH++G+KHKAKL +        +K+   K    Q      N    S+   ++H+  + +
Sbjct: 236 NQHIQGKKHKAKLVQC-----GAIKVKDTKKSGLQVTTGNNNGASPSDAPKKIHILVDGE 290

Query: 194 KHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNH 236
            H+ +Q++ C          C+ C V C N  A   HL GK H
Sbjct: 291 MHQVVQKSNCVR--------CERCRVSCTNAAAMADHLRGKKH 325

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494712|ref|XP_003634825.1| PREDICTED: uncharacterized protein LOC100853636 [Vitis vinifera]

 Score = 57.8 bits (138), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 24/122 (19%)

Query: 121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGF 180
           +C+IC+V C+S  +   HL GR+H   +++L                  + WC  CN+  
Sbjct: 704 WCNICNVSCTSELDMASHLNGRRHFDSIKQL-----------------SELWCSNCNVKC 746

Query: 181 SSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRL 240
           +SE     H N ++H    + +  L       WC +C V C +      HL+G+ H+ ++
Sbjct: 747 NSEVDMASHQNGRRHLEQLKERLGL-------WCSICSVSCNSKVDMDSHLNGRRHLDQI 799

Query: 241 YE 242
            E
Sbjct: 800 EE 801

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125605735|gb|EAZ44771.1| hypothetical protein OsJ_29403 [Oryza sativa Japonica Group]

 Score = 57.0 bits (136), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 17/131 (12%)

Query: 122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQT----WCRLCN 177
           CSIC++ C+   +++ HLKG+KH+A  Q L L+ N    ++    G K       CR+C 
Sbjct: 166 CSICNISCNGECDFDTHLKGKKHQANTQAL-LEQNKKSSVNPESQGTKAAAATLICRVCQ 224

Query: 178 IGFSSEELFRLHLNAKKHKALQRAKCTLKGGG-----------EQKWCKLCDVWCPNGDA 226
             F+ +   + HL   KH+   RA  +  G             E   CK+C V C     
Sbjct: 225 AKFTCQSDLQSHLKVMKHQLNLRAPSS-DGSSFTSATSESLSLELYSCKVCSVKCTFERM 283

Query: 227 FKMHLDGKNHI 237
              HL GK H+
Sbjct: 284 LAYHLTGKKHL 294

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	259
UNIPROTKB|Q96KR1	1074	ZFR "Zinc finger RNA-binding p	0.297	0.071	0.285	7.1e-08
UNIPROTKB|F1NLI6	1075	LOC427010 "Uncharacterized pro	0.297	0.071	0.272	1.2e-07
UNIPROTKB|J9NWA2	981	ZFR "Uncharacterized protein"	0.297	0.078	0.272	1.3e-07
UNIPROTKB|F1N0Y9	1030	ZFR "Uncharacterized protein"	0.297	0.074	0.272	1.5e-07
UNIPROTKB|E2R6T6	1073	ZFR "Uncharacterized protein"	0.297	0.071	0.272	1.8e-07
MGI|MGI:1341890	1074	Zfr "zinc finger RNA binding p	0.297	0.071	0.272	1.8e-07
UNIPROTKB|F6XZ19	1076	ZFR "Uncharacterized protein"	0.297	0.071	0.272	1.8e-07
UNIPROTKB|F1N855	1025	LOC427010 "Uncharacterized pro	0.297	0.075	0.272	3.6e-07
ZFIN|ZDB-GENE-030131-378	1074	zfr "zinc finger RNA binding p	0.297	0.071	0.275	2.1e-06
ZFIN|ZDB-GENE-070209-152	301	znf346 "zinc finger protein 34	0.355	0.305	0.33	1.5e-05

UNIPROTKB|Q96KR1 ZFR "Zinc finger RNA-binding protein" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 7.1e-08, Sum P(3) = 7.1e-08
 Identities = 22/77 (28%), Positives = 40/77 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
             ++C +C + C+    Y +HL+G+KHK K   LK   N+    S  +  + Q  C LC++ 
Sbjct:   331 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNSSTRGTQNQLRCELCDVS 390

Query:   180 FSSEELFRLHLNAKKHK 196
              +  + +  H+   KH+
Sbjct:   391 CTGADAYAAHIRGAKHQ 407

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1NLI6 LOC427010 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 132 (51.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
             ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct:   334 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTNNSSTSARGTQNQLRCELCDVS 393

Query:   180 FSSEELFRLHLNAKKHK 196
              +  + +  H+   KH+
Sbjct:   394 CTGADAYAAHIRGAKHQ 410

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9NWA2 ZFR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 133 (51.9 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
             ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct:   331 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVS 390

Query:   180 FSSEELFRLHLNAKKHK 196
              +  + +  H+   KH+
Sbjct:   391 CTGADAYAAHIRGAKHQ 407

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1N0Y9 ZFR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
             ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct:   288 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVS 347

Query:   180 FSSEELFRLHLNAKKHK 196
              +  + +  H+   KH+
Sbjct:   348 CTGADAYAAHIRGAKHQ 364

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2R6T6 ZFR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 133 (51.9 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
             ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct:   331 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVS 390

Query:   180 FSSEELFRLHLNAKKHK 196
              +  + +  H+   KH+
Sbjct:   391 CTGADAYAAHIRGAKHQ 407

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1341890 Zfr "zinc finger RNA binding protein" [Mus musculus (taxid:10090)]

 Score = 133 (51.9 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
             ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct:   331 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVS 390

Query:   180 FSSEELFRLHLNAKKHK 196
              +  + +  H+   KH+
Sbjct:   391 CTGADAYAAHIRGAKHQ 407

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F6XZ19 ZFR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 133 (51.9 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
             ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct:   332 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKASQNTSSSNNSTRGTQNQLRCELCDVS 391

Query:   180 FSSEELFRLHLNAKKHK 196
              +  + +  H+   KH+
Sbjct:   392 CTGADAYAAHIRGAKHQ 408

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1N855 LOC427010 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 130 (50.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
 Identities = 21/77 (27%), Positives = 40/77 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIG 179
             ++C +C + C+    Y +HL+G+KHK K   LK   N+    +  +  + Q  C LC++ 
Sbjct:   288 HYCDVCKISCAGPQTYKEHLEGQKHKKKETALKASQNTNNGSTSARGTQNQLRCELCDVS 347

Query:   180 FSSEELFRLHLNAKKHK 196
              +  + +  H+   KH+
Sbjct:   348 CTGADAYAAHIRGAKHQ 364

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-378 zfr "zinc finger RNA binding protein" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
 Identities = 22/80 (27%), Positives = 41/80 (51%)

Query:   120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKM---SLVKVGEKQTWCRLC 176
             ++C +C + C+    Y +HL+G+KHK K   LK+  +S       S  +  + Q  C LC
Sbjct:   324 HYCDVCKISCAGPQTYKEHLEGQKHKKKEAALKVSQSSSSSSGGGSSARGTQNQLRCELC 383

Query:   177 NIGFSSEELFRLHLNAKKHK 196
             ++  +  + +  H+   KH+
Sbjct:   384 DVSCTGADAYAAHIRGAKHQ 403

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

ZFIN|ZDB-GENE-070209-152 znf346 "zinc finger protein 346" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 1.5e-05, P = 1.5e-05
 Identities = 33/100 (33%), Positives = 47/100 (47%)

Query:   101 PELPESLDSHPEHAIQADSN-FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLD---GN 156
             P+     D   +   + D N FCSIC    ++     QH  G+KHK  + + KL    G 
Sbjct:   160 PKAQAKKDDGMQGPAEQDPNRFCSICQASFNNPLMAQQHYSGKKHKKHMNKQKLMETFGP 219

Query:   157 SLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHK 196
             S    S VK G     C +CNI  +S E ++ H++  KHK
Sbjct:   220 STAPASTVK-GYP---CTVCNIELNSVEQYQAHISGSKHK 255

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	259
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	1e-05
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	2e-04
pfam12874	25	pfam12874, zf-met, Zinc-finger of C2H2 type	3e-04
smart00451	35	smart00451, ZnF_U1, U1-like zinc finger	6e-04
pfam12171	27	pfam12171, zf-C2H2_jaz, Zinc-finger double-strande	0.002

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQEL 151
           +C +C+V  +   +   HLKG+KHK  +++ 
Sbjct: 5   YCKLCNVTFTDEISVEAHLKGKKHKKNVKKR 35

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 121 FCSICHVPCSSAFNYNQHLKGRKH 144
           +C +C+V  +S      HL+G+KH
Sbjct: 2   YCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type

 Score = 36.7 bits (86), Expect = 3e-04
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 172 WCRLCNIGFSSEELFRLHLNAKKH 195
           +C LCN+ F+SE   + HL  KKH
Sbjct: 2   YCELCNVTFTSESQLKSHLRGKKH 25

This is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding. Length = 25

>gnl|CDD|197732 smart00451, ZnF_U1, U1-like zinc finger

 Score = 36.1 bits (84), Expect = 6e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 209 GEQKWCKLCDVWCPNGDAFKMHLDGKNHILRL 240
               +CKLC+V   +  + + HL GK H   +
Sbjct: 1   TGGFYCKLCNVTFTDEISVEAHLKGKKHKKNV 32

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins. Length = 35

>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding

 Score = 34.5 bits (80), Expect = 0.002
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 170 QTWCRLCNIGFSSEELFRLHLNAKKHK 196
           Q +C  C+  F SE     HL +KKHK
Sbjct: 1   QFYCVACDKYFKSENALENHLKSKKHK 27

This domain family is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	259
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.61
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.57
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	98.42
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	98.39
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	98.37
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	98.28
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.94
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.67
PF06220	38	zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc fi	97.63
KOG4727	193	consensus U1-like Zn-finger protein [General funct	97.6
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	97.45
KOG4727	193	consensus U1-like Zn-finger protein [General funct	96.82
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.8
KOG3576	267	consensus Ovo and related transcription factors [T	96.54
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	96.52
KOG3608	467	consensus Zn finger proteins [General function pre	96.44
PLN02748	468	tRNA dimethylallyltransferase	96.36
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	96.3
PF14968	336	CCDC84: Coiled coil protein 84	96.23
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	96.18
KOG2785	390	consensus C2H2-type Zn-finger protein [General fun	96.05
PF14968	336	CCDC84: Coiled coil protein 84	95.9
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	95.88
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	95.69
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	95.4
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	95.25
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	95.2
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	94.66
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	94.61
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	94.47
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	94.36
KOG3408	129	consensus U1-like Zn-finger-containing protein, pr	94.28
KOG3993	500	consensus Transcription factor (contains Zn finger	94.15
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	94.02
KOG1146	1406	consensus Homeobox protein [General function predi	93.92
KOG3608	467	consensus Zn finger proteins [General function pre	93.52
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	93.5
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	93.48
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.3
KOG4722	672	consensus Zn-finger protein [General function pred	93.21
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	93.16
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	93.08
PHA00733	128	hypothetical protein	93.04
KOG3576	267	consensus Ovo and related transcription factors [T	93.03
PF07535	49	zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc	92.91
KOG3032	264	consensus Uncharacterized conserved protein [Funct	92.75
smart00586	49	ZnF_DBF Zinc finger in DBF-like proteins.	92.67
PLN02748	468	tRNA dimethylallyltransferase	92.57
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	92.43
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	92.33
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	92.31
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	91.65
COG5112	126	UFD2 U1-like Zn-finger-containing protein [General	91.43
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	91.14
COG5188	470	PRP9 Splicing factor 3a, subunit 3 [RNA processing	90.26
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	90.21
KOG4722	672	consensus Zn-finger protein [General function pred	90.02
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	89.57
smart00355	26	ZnF_C2H2 zinc finger.	88.72
KOG0227	222	consensus Splicing factor 3a, subunit 2 [RNA proce	88.49
KOG3454	165	consensus U1 snRNP-specific protein C [RNA process	88.01
PF04988	165	AKAP95: A-kinase anchoring protein 95 (AKAP95); In	87.71
KOG0150	336	consensus Spliceosomal protein FBP21 [RNA processi	87.31
KOG3032	264	consensus Uncharacterized conserved protein [Funct	87.1
smart00355	26	ZnF_C2H2 zinc finger.	87.07
COG5136	188	U1 snRNP-specific protein C [RNA processing and mo	86.45
KOG3993	500	consensus Transcription factor (contains Zn finger	85.29
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	84.32
COG5246	222	PRP11 Splicing factor 3a, subunit 2 [RNA processin	83.55
KOG1146	1406	consensus Homeobox protein [General function predi	83.38
PHA00732	79	hypothetical protein	81.12

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.61  E-value=2.6e-08  Score=63.15  Aligned_cols=33  Identities=30%  Similarity=0.546  Sum_probs=30.5

Q ss_pred             CcccCCccccccCCHHHHHHhhcchHHHHHHHH
Q 047603          210 EQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYE  242 (259)
Q Consensus       210 ~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~  242 (259)
                      ..|||++|++.|++...+.+|++|++|+.+++.
T Consensus         2 ~~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            358999999999999999999999999999864

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.57  E-value=2.8e-08  Score=58.63  Aligned_cols=25  Identities=24%  Similarity=0.681  Sum_probs=24.2

Q ss_pred             ccCCccccccCCHHHHHHhhcchHH
Q 047603          212 KWCKLCDVWCPNGDAFKMHLDGKNH  236 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~GkKH  236 (259)
                      |+|++|++.|+|+.+|.+|++|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            6899999999999999999999998

>smart00451 ZnF_U1 U1-like zinc finger

Probab=98.42  E-value=1.3e-07  Score=59.92  Aligned_cols=32  Identities=31%  Similarity=0.786  Sum_probs=29.6

Q ss_pred             CCCCCCCcccCCCHHHHHHHhcCCchHHHHHH
Q 047603          119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQE  150 (259)
Q Consensus       119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~  150 (259)
                      .+||++|+++|++...+.+|+.|++|+.+++.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHChHHHHHHHHc
Confidence            47899999999999999999999999999863

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=98.39  E-value=7.2e-08  Score=96.84  Aligned_cols=112  Identities=25%  Similarity=0.408  Sum_probs=89.5

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCcccccccc-ccCCcccccccccCccCCHHHHHHHhchhhHHHH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLV-KVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKAL  198 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~-~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~  198 (259)
                      .||++|++.|+..+.+..|+.|-+|+++..          .+-.. +.-...++|+.|-++|++.+.+..|+++.+|..+
T Consensus       194 ~~~kw~k~~a~G~qs~re~lr~~r~l~krv----------pt~~~~kgw~~el~cEksi~tcs~pd~~g~alRrv~ec~~  263 (816)
T KOG3792|consen  194 HYCKWCKISAAGPQTYREHLRGQKHLKKEV----------PTNGPLKGWPLELHCEKSIVTCSGPDAYGAALRRVKECKV  263 (816)
T ss_pred             hhhHHHHHhccccHHHHHHHHHHHHHHhcc----------CCCCCcccchHHHHHHHhhccccCccchHHHHHHHHHhhh
Confidence            579999999999999999999999998762          11101 1113367899999999999999999999999998


Q ss_pred             HHHhhh-------------------c------------------------------c-----------------------
Q 047603          199 QRAKCT-------------------L------------------------------K-----------------------  206 (259)
Q Consensus       199 ~k~~e~-------------------l------------------------------~-----------------------  206 (259)
                      .++...                   +                              +                       
T Consensus       264 skL~~k~G~gi~d~cek~~tds~~~le~qqrEdit~Saq~A~Rl~aagq~~kvl~mdplp~~~p~~~~a~~~~~~~kpvg  343 (816)
T KOG3792|consen  264 SKLHKKLGKGIPDPCEKDATDSLGQLEAQQREDITASAQHALRLAAAGQLTKVLGMDPLPSGKPAQPNAMAAASEVKPVG  343 (816)
T ss_pred             hcccccCCCCCCCccccccccCccchhhcccCccchhhhhhhcchhcccchhhhccCcCccccccccccccccccccCCc
Confidence            776310                   0                              0                       


Q ss_pred             -----------CCCCcccCCccccccCCHHHHHHhhcchHHHHHHH
Q 047603          207 -----------GGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLY  241 (259)
Q Consensus       207 -----------g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk  241 (259)
                                 |+.-.|.|.+|+..|+....-.+||+|.||+..++
T Consensus       344 eE~v~Eekd~~gK~~~f~cKlcdckf~d~nak~mhl~grRhrLQYk  389 (816)
T KOG3792|consen  344 EEYVEEEKDPEGKLLRFHCKLCDCKFNDPNAKEMHLKGRRHRLQYK  389 (816)
T ss_pred             ccccccccCcccchHhhhhhhhcCCCCCcchHHhhhhcccccceec
Confidence                       01127889999999999999999999999998777

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=98.37  E-value=2.1e-07  Score=56.19  Aligned_cols=27  Identities=30%  Similarity=0.696  Sum_probs=25.3

Q ss_pred             cccCCccccccCCHHHHHHhhcchHHH
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDGKNHI  237 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~  237 (259)
                      .|||.+|+..|+++.+|.+|++|++|+
T Consensus         1 q~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    1 QFYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             -CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCCcccCCCCcCCHHHHHHHHccCCCC
Confidence            489999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=98.28  E-value=2.1e-07  Score=54.77  Aligned_cols=25  Identities=40%  Similarity=0.784  Sum_probs=23.7

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCch
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKH  144 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKH  144 (259)
                      +||+||+++|+++..|++|+.|++|
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSKKH   25 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTHHH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcCCC
Confidence            3599999999999999999999998

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.94  E-value=2.6e-06  Score=51.33  Aligned_cols=26  Identities=38%  Similarity=0.673  Sum_probs=24.9

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHK  145 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHk  145 (259)
                      +||.+|+..|+++.++.+|+.|++|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~sk~Hk   27 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKSKKHK   27 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred             CCcccCCCCcCCHHHHHHHHccCCCC
Confidence            67999999999999999999999996

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.67  E-value=4.9e-05  Score=49.86  Aligned_cols=32  Identities=19%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             cccCCcccccc--CCHHHHHHhhcchHHHHHHHH
Q 047603          211 QKWCKLCDVWC--PNGDAFKMHLDGKNHILRLYE  242 (259)
Q Consensus       211 ~~~C~lCnV~~--~Se~~m~~HL~GkKH~~~lk~  242 (259)
                      .+||+.|++.+  ++...-..|..|++|+.++++
T Consensus         3 ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~   36 (38)
T PF06220_consen    3 RYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKR   36 (38)
T ss_dssp             S-B-TTT--B-S--SHHHHHHHT--THHHHHHHH
T ss_pred             CeecccccceecCCChHHHHHhhccHHHHHHHHH
Confidence            58999999999  455677899999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.63  E-value=5.1e-05  Score=49.78  Aligned_cols=34  Identities=26%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             CCCCCCCCcccC--CCHHHHHHHhcCCchHHHHHHh
Q 047603          118 DSNFCSICHVPC--SSAFNYNQHLKGRKHKAKLQEL  151 (259)
Q Consensus       118 ~~~~C~lC~V~~--tSe~~l~~Hl~GKKHkkk~~~l  151 (259)
                      ++.||+.|++++  ++...-..|..|.+|+.+++..
T Consensus         2 ~ryyCdyC~~~~~~d~~~~Rk~H~~G~kH~~nv~~~   37 (38)
T PF06220_consen    2 PRYYCDYCKKYLTHDSPSIRKQHERGWKHKENVKRY   37 (38)
T ss_dssp             -S-B-TTT--B-S--SHHHHHHHT--THHHHHHHHH
T ss_pred             cCeecccccceecCCChHHHHHhhccHHHHHHHHHh
Confidence            357899999999  4556779999999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=97.60  E-value=3.5e-05  Score=65.99  Aligned_cols=37  Identities=24%  Similarity=0.413  Sum_probs=33.2

Q ss_pred             CCCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603          207 GGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI  243 (259)
Q Consensus       207 g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~  243 (259)
                      +..+.|||.||+..+....+|..|++|++|+.++--.
T Consensus        71 sq~~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   71 SQKGGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             cccCceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            4466899999999999999999999999999998654

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=97.45  E-value=0.0001  Score=70.12  Aligned_cols=76  Identities=21%  Similarity=0.396  Sum_probs=63.4

Q ss_pred             ccccccccCccCCHHHHHHHhchhhHHHHHHHh---------hhc---------------cCCCCcccCCccccccCCHH
Q 047603          170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAK---------CTL---------------KGGGEQKWCKLCDVWCPNGD  225 (259)
Q Consensus       170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~---------e~l---------------~g~~~~~~C~lCnV~~~Se~  225 (259)
                      .+.|..|+|.|.+.+.-..|++.-.|+-++|-+         +.+               ......++|.+|+..+.|..
T Consensus         3 ~ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~   82 (390)
T KOG2785|consen    3 GFTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPK   82 (390)
T ss_pred             cceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChh
Confidence            467999999999999999999999999987643         111               01234777999999999999


Q ss_pred             HHHHhhcchHHHHHHHHHHH
Q 047603          226 AFKMHLDGKNHILRLYEIEK  245 (259)
Q Consensus       226 ~m~~HL~GkKH~~~lk~~~~  245 (259)
                      .+..||+.++|..++.+...
T Consensus        83 a~~~hl~Sk~h~~~~~~~~r  102 (390)
T KOG2785|consen   83 AHENHLKSKKHVENLSNHQR  102 (390)
T ss_pred             hHHHHHHHhhcchhhhhhhc
Confidence            99999999999999988653

>KOG4727 consensus U1-like Zn-finger protein [General function prediction only]

Probab=96.82  E-value=0.00073  Score=58.05  Aligned_cols=34  Identities=24%  Similarity=0.663  Sum_probs=30.8

Q ss_pred             CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHh
Q 047603          118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQEL  151 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l  151 (259)
                      ..+||+||+.++-...+|.+|++||+|+.++..+
T Consensus        74 ~GyyCdVCdcvvKDSinflDHiNgKkHqrnlgms  107 (193)
T KOG4727|consen   74 GGYYCDVCDCVVKDSINFLDHINGKKHQRNLGMS  107 (193)
T ss_pred             CceeeeecceeehhhHHHHHHhccHHHHHHHhhh
Confidence            3488999999999999999999999999999754

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.80  E-value=0.00038  Score=52.60  Aligned_cols=68  Identities=26%  Similarity=0.377  Sum_probs=26.3

Q ss_pred             cccccCccCCHHHHHHHhchhhHHHHHHHhhh----------ccC-CCCcccCCccccccCCHHHHHHhhcchHHHHHHH
Q 047603          173 CRLCNIGFSSEELFRLHLNAKKHKALQRAKCT----------LKG-GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLY  241 (259)
Q Consensus       173 C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~----------l~g-~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk  241 (259)
                      |.+|+..|++...+..|+. ..|.........          +.. ....+.|.+|+..|.+...+..||+.+.|.....
T Consensus         2 C~~C~~~f~~~~~l~~H~~-~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~~   80 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMK-KKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHHKKRNS   80 (100)
T ss_dssp             ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTTC-S-
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCccCCCccc
Confidence            8899999999999999995 566654321111          111 1235779999999999999999999999988643

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=96.54  E-value=0.0097  Score=52.91  Aligned_cols=106  Identities=20%  Similarity=0.329  Sum_probs=65.5

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh--cC--Cccc--cccc-cccCCcccccccccCccCCHHHHHHHhc-
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL--DG--NSLV--KMSL-VKVGEKQTWCRLCNIGFSSEELFRLHLN-  191 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~--~~--~~~~--~p~~-~~~~~~~~~C~lCnv~~~S~~~l~sHl~-  191 (259)
                      +.|.||...|.=+..|+.|+.--  -.--+.|-.  ++  +..-  +-.. .-.+..++.|.+|+..|+..-.+++|++ 
T Consensus       118 ftCrvCgK~F~lQRmlnrh~kch--~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc~~c~kaftqrcsleshl~k  195 (267)
T KOG3576|consen  118 FTCRVCGKKFGLQRMLNRHLKCH--SDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKCSLCEKAFTQRCSLESHLKK  195 (267)
T ss_pred             eeeehhhhhhhHHHHHHHHhhhc--cHHHHHHHhhccCcccchhhhhhhhccccCccccchhhhhHHHHhhccHHHHHHH
Confidence            44999999999999999998643  222222211  11  1000  0000 0112346779999999998888888876 


Q ss_pred             --hhhHHHHHHHhhhccCCCCccc-CCccccccCCHHHHHHhhcc
Q 047603          192 --AKKHKALQRAKCTLKGGGEQKW-CKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       192 --GkKH~~~~k~~e~l~g~~~~~~-C~lCnV~~~Se~~m~~HL~G  233 (259)
                        |-.|+-..+      ...+.+| |+-|..+-....++..|++-
T Consensus       196 vhgv~~~yayk------err~kl~vcedcg~t~~~~e~~~~h~~~  234 (267)
T KOG3576|consen  196 VHGVQHQYAYK------ERRAKLYVCEDCGYTSERPEVYYLHLKL  234 (267)
T ss_pred             HcCchHHHHHH------HhhhheeeecccCCCCCChhHHHHHHHh
Confidence              222222111      2233455 99999999999999999864

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=96.52  E-value=0.0024  Score=52.06  Aligned_cols=46  Identities=33%  Similarity=0.580  Sum_probs=39.7

Q ss_pred             CCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH-------HHHHhhccCC
Q 047603          208 GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI-------EKNRRAENLG  253 (259)
Q Consensus       208 ~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~-------~~~~~~~~~g  253 (259)
                      +.+.|||-.|.-.|-++.+|..|.+++.|+++|+++       ++...+-|.|
T Consensus        54 G~GqfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~~PySQeeAe~A~G~g  106 (129)
T KOG3408|consen   54 GGGQFYCIECARYFIDAKALKTHFKTKVHKRRVKELREVPYSQEEAEAAAGMG  106 (129)
T ss_pred             CCceeehhhhhhhhcchHHHHHHHhccHHHHHHHhcccCCccHHHHHHhccCC
Confidence            356899999999999999999999999999999997       3446666666

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=96.44  E-value=0.0036  Score=59.49  Aligned_cols=106  Identities=22%  Similarity=0.395  Sum_probs=67.6

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccc-----cc-------cccCCcccccccccCccCCHHHHHHH
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKM-----SL-------VKVGEKQTWCRLCNIGFSSEELFRLH  189 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p-----~~-------~~~~~~~~~C~lCnv~~~S~~~l~sH  189 (259)
                      |+.|...|.++..|.+|..  +|-.-.+      -++..+     +.       .-..+.+|.|+.|+..|-.+.+|+.|
T Consensus       240 C~~C~KrFaTeklL~~Hv~--rHvn~yk------CplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH  311 (467)
T KOG3608|consen  240 CAQCFKRFATEKLLKSHVV--RHVNCYK------CPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKH  311 (467)
T ss_pred             HHHHHHHHhHHHHHHHHHH--Hhhhccc------ccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHH
Confidence            8888888888887777764  4432221      000000     00       00125688899999999999999988


Q ss_pred             hchhhHHHHH------------HHhhhc--------cCCCCccc-CCccccccCCHHHHHHhhcchHHHH
Q 047603          190 LNAKKHKALQ------------RAKCTL--------KGGGEQKW-CKLCDVWCPNGDAFKMHLDGKNHIL  238 (259)
Q Consensus       190 l~GkKH~~~~------------k~~e~l--------~g~~~~~~-C~lCnV~~~Se~~m~~HL~GkKH~~  238 (259)
                      +.  -|-+..            +.+.+|        .|.....| |-+|+..|++...+..||. |||+-
T Consensus       312 ~~--~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~L~~HL~-kkH~f  378 (467)
T KOG3608|consen  312 VQ--VHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKSLSAHLM-KKHGF  378 (467)
T ss_pred             HH--hccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchhHHHHHH-Hhhcc
Confidence            76  333211            111111        25556666 9999999999999999997 55654

>PLN02748 tRNA dimethylallyltransferase

Probab=96.36  E-value=0.0033  Score=62.04  Aligned_cols=40  Identities=18%  Similarity=0.408  Sum_probs=35.0

Q ss_pred             cccCCcccc-ccCCHHHHHHhhcchHHHHHHHHHHHHHhhc
Q 047603          211 QKWCKLCDV-WCPNGDAFKMHLDGKNHILRLYEIEKNRRAE  250 (259)
Q Consensus       211 ~~~C~lCnV-~~~Se~~m~~HL~GkKH~~~lk~~~~~~~~~  250 (259)
                      .|.|++|+. ++..+.+.++|++|++|+++++...++...+
T Consensus       418 ~~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~k~~~~~  458 (468)
T PLN02748        418 QYVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLKQKQTQK  458 (468)
T ss_pred             cccccCCCCcccCCHHHHHHHhcchHHHHHHhHHHhhhhcc
Confidence            556999998 8999999999999999999999887765544

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=96.30  E-value=0.0016  Score=49.18  Aligned_cols=75  Identities=33%  Similarity=0.503  Sum_probs=25.3

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhHh--cCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHH
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKL--DGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKAL  198 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~--~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~  198 (259)
                      |.+|+..|++...+..|+. ..|.-.+.....  ....+. .-........+.|.+|+..|.+...+..|+..+.|...
T Consensus         2 C~~C~~~f~~~~~l~~H~~-~~H~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~   78 (100)
T PF12756_consen    2 CLFCDESFSSVDDLLQHMK-KKHGFDIPDQKYLVDPNRLL-NYLRKKVKESFRCPYCNKTFRSREALQEHMRSKHHKKR   78 (100)
T ss_dssp             -------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTTTTC-
T ss_pred             ccccccccccccccccccc-cccccccccccccccccccc-cccccccCCCCCCCccCCCCcCHHHHHHHHcCccCCCc
Confidence            8999999999999999995 778766542111  001000 00001112247799999999999999999999989874

>PF14968 CCDC84: Coiled coil protein 84

Probab=96.23  E-value=0.0031  Score=59.68  Aligned_cols=70  Identities=23%  Similarity=0.390  Sum_probs=53.3

Q ss_pred             ccccccCccCCHHHHHHHhchhhHHHHHHHh-----hh-------cc---------CCCCcccCCccccccCCH------
Q 047603          172 WCRLCNIGFSSEELFRLHLNAKKHKALQRAK-----CT-------LK---------GGGEQKWCKLCDVWCPNG------  224 (259)
Q Consensus       172 ~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~-----e~-------l~---------g~~~~~~C~lCnV~~~Se------  224 (259)
                      ||.+|+.+...   -.-|.-+.+|+..+...     .+       |.         .....|||-.|++...-.      
T Consensus         1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf~~Kl~d~R~~lk~p~v~~~~~~~~~~fWC~fC~~ev~~~~s~~~~   77 (336)
T PF14968_consen    1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRFRSKLSDARFFLKKPSVLRYDPEHRNRFWCVFCDCEVREHDSSFAC   77 (336)
T ss_pred             CcchhhCcccc---cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeEeeCccchhhhccchhhh
Confidence            79999986654   66888899999976542     11       11         134599999999877644      


Q ss_pred             HHHHHhhcchHHHHHHHHHH
Q 047603          225 DAFKMHLDGKNHILRLYEIE  244 (259)
Q Consensus       225 ~~m~~HL~GkKH~~~lk~~~  244 (259)
                      ..+..||.+..|+++++++.
T Consensus        78 ~~ai~HLaS~eH~k~vk~F~   97 (336)
T PF14968_consen   78 GGAIEHLASPEHRKNVKKFW   97 (336)
T ss_pred             ccHHhhcCCHHHHHHHHHHH
Confidence            36789999999999999983

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.0038  Score=61.02  Aligned_cols=42  Identities=24%  Similarity=0.440  Sum_probs=36.5

Q ss_pred             CCcccCCccccccCCHHHHHHhhcchHHHHHHHHHHHHHhhc
Q 047603          209 GEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKNRRAE  250 (259)
Q Consensus       209 ~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~~~~~~~  250 (259)
                      ++.+||-+||.+|.|+.+|..|.++|||+.+|.++-+..+.+
T Consensus       290 ge~lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLrqemEEE  331 (508)
T KOG0717|consen  290 GEVLYCVVCNKSFKSEKQLKNHENSKKHKENVAELRQEMEEE  331 (508)
T ss_pred             CCceEEeeccccccchHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence            345999999999999999999999999999999986554433

>KOG2785 consensus C2H2-type Zn-finger protein [General function prediction only]

Probab=96.05  E-value=0.0056  Score=58.46  Aligned_cols=81  Identities=23%  Similarity=0.340  Sum_probs=61.2

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccc-----------cccc--c-ccCCcccccccccCccCCHHH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLV-----------KMSL--V-KVGEKQTWCRLCNIGFSSEEL  185 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~-----------~p~~--~-~~~~~~~~C~lCnv~~~S~~~  185 (259)
                      +.|.-|+|.|.+...-..||..--|+=|++....+-.++.           ....  . ......++|.+|+-.+.|+..
T Consensus         4 ftC~tC~v~F~~ad~Qr~HyKSdWHRYNLKRkVA~lPPItaE~F~~k~~s~~~~~~~~~e~~~~~~~c~~c~k~~~s~~a   83 (390)
T KOG2785|consen    4 FTCNTCNVEFDDADEQRAHYKSDWHRYNLKRKVASLPPITAEEFNEKVLSDDSEKEENLEEAESVVYCEACNKSFASPKA   83 (390)
T ss_pred             ceeeceeeeeccHHHHHHHhhhhHHHhhHHhHhhcCCCcCHHHHhHHHhhhhhhhhhhhhhcccceehHHhhccccChhh
Confidence            4499999999999999999999999999875433222210           0000  0 122446789999999999999


Q ss_pred             HHHHhchhhHHHHHH
Q 047603          186 FRLHLNAKKHKALQR  200 (259)
Q Consensus       186 l~sHl~GkKH~~~~k  200 (259)
                      +..|+..++|..++.
T Consensus        84 ~~~hl~Sk~h~~~~~   98 (390)
T KOG2785|consen   84 HENHLKSKKHVENLS   98 (390)
T ss_pred             HHHHHHHhhcchhhh
Confidence            999999999998653

>PF14968 CCDC84: Coiled coil protein 84

Probab=95.90  E-value=0.0037  Score=59.21  Aligned_cols=78  Identities=19%  Similarity=0.347  Sum_probs=56.5

Q ss_pred             CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcC--------Ccccccccc---ccCCcccccccccCccCCH------
Q 047603          121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDG--------NSLVKMSLV---KVGEKQTWCRLCNIGFSSE------  183 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~--------~~~~~p~~~---~~~~~~~~C~lCnv~~~S~------  183 (259)
                      ||.||+.+...   -+-|..+++|++++..++..-        ..+..|...   ......|||-.|+....-.      
T Consensus         1 yC~vCr~~h~~---gr~H~Y~~~Hq~~L~~~L~rf~~Kl~d~R~~lk~p~v~~~~~~~~~~fWC~fC~~ev~~~~s~~~~   77 (336)
T PF14968_consen    1 YCEVCRRNHDQ---GRRHVYSPKHQKSLSAFLSRFRSKLSDARFFLKKPSVLRYDPEHRNRFWCVFCDCEVREHDSSFAC   77 (336)
T ss_pred             CcchhhCcccc---cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeEeeCccchhhhccchhhh
Confidence            79999998765   688999999999999875421        113334421   1235589999999877532      


Q ss_pred             HHHHHHhchhhHHHHHHH
Q 047603          184 ELFRLHLNAKKHKALQRA  201 (259)
Q Consensus       184 ~~l~sHl~GkKH~~~~k~  201 (259)
                      ..+..|+.+..|+++++.
T Consensus        78 ~~ai~HLaS~eH~k~vk~   95 (336)
T PF14968_consen   78 GGAIEHLASPEHRKNVKK   95 (336)
T ss_pred             ccHHhhcCCHHHHHHHHH
Confidence            356799999999998765

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=95.88  E-value=0.0018  Score=65.86  Aligned_cols=73  Identities=23%  Similarity=0.345  Sum_probs=59.4

Q ss_pred             cccccccCccCCHHHHHHHhchhhHHHHHH-HhhhccCCCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603          171 TWCRLCNIGFSSEELFRLHLNAKKHKALQR-AKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI  243 (259)
Q Consensus       171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k-~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~  243 (259)
                      .||++|++.++....+..|++|.||+.+.. ....+++-...+.|+.|.++|++..-+..||++.+|.+..+-.
T Consensus       194 ~~~kw~k~~a~G~qs~re~lr~~r~l~krvpt~~~~kgw~~el~cEksi~tcs~pd~~g~alRrv~ec~~skL~  267 (816)
T KOG3792|consen  194 HYCKWCKISAAGPQTYREHLRGQKHLKKEVPTNGPLKGWPLELHCEKSIVTCSGPDAYGAALRRVKECKVSKLH  267 (816)
T ss_pred             hhhHHHHHhccccHHHHHHHHHHHHHHhccCCCCCcccchHHHHHHHhhccccCccchHHHHHHHHHhhhhccc
Confidence            379999999999999999999999998641 1111233344778999999999999999999999999876544

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=95.69  E-value=0.0051  Score=52.48  Aligned_cols=34  Identities=26%  Similarity=0.492  Sum_probs=29.6

Q ss_pred             CCCCCCCcccCC--CHHHHHHHhcCCchHHHHHHhH
Q 047603          119 SNFCSICHVPCS--SAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       119 ~~~C~lC~V~~t--Se~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      +.||+.|++.+|  |.++-..|+.|+||+.+++.+.
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~YY   38 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKDYY   38 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHHHH
Confidence            577999997775  7889999999999999998654

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=95.40  E-value=0.0029  Score=65.51  Aligned_cols=82  Identities=26%  Similarity=0.487  Sum_probs=67.4

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ  199 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~  199 (259)
                      .-|-||.-.+.....|+-||.  -|-                     +..+|.|+||+-.|+..-+|..|+.+-|-+--.
T Consensus       606 NqCiiC~rVlSC~saLqmHyr--tHt---------------------GERPFkCKiCgRAFtTkGNLkaH~~vHka~p~~  662 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYR--THT---------------------GERPFKCKICGRAFTTKGNLKAHMSVHKAKPPA  662 (958)
T ss_pred             cceeeeeecccchhhhhhhhh--ccc---------------------CcCccccccccchhccccchhhcccccccCccc
Confidence            459999999999999999996  232                     334789999999999999999999974433323


Q ss_pred             HHhhhccCCCCcccCC---ccccccCCHHHHHHhhcc
Q 047603          200 RAKCTLKGGGEQKWCK---LCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       200 k~~e~l~g~~~~~~C~---lCnV~~~Se~~m~~HL~G  233 (259)
                      ++         .+.|.   ||.-.|+....+.+|++.
T Consensus       663 R~---------q~ScP~~~ic~~kftn~V~lpQhIri  690 (958)
T KOG1074|consen  663 RV---------QFSCPSTFICQKKFTNAVTLPQHIRI  690 (958)
T ss_pred             cc---------cccCCchhhhcccccccccccceEEe
Confidence            32         57899   999999999999999875

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.25  E-value=0.012  Score=40.69  Aligned_cols=27  Identities=19%  Similarity=0.403  Sum_probs=24.3

Q ss_pred             cccCCccccccCCHHHHHHhhcchHHHHHH
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRL  240 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~l  240 (259)
                      .-||+.|.+.+.   .|..|+.+.+|+.=+
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHH
Confidence            579999999998   699999999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=95.20  E-value=0.0086  Score=41.45  Aligned_cols=32  Identities=16%  Similarity=0.249  Sum_probs=26.8

Q ss_pred             cccCCccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEK  245 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~~  245 (259)
                      .-||+.|.+.|.   .|..|+.+.+|+.=......
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~~~~N   36 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFAENNDN   36 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHHcCchh
Confidence            579999999998   88999999999986655433

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=94.66  E-value=0.14  Score=47.26  Aligned_cols=91  Identities=22%  Similarity=0.474  Sum_probs=54.2

Q ss_pred             CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHH
Q 047603          118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKA  197 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~  197 (259)
                      +..-|.-|+....+-..|-.|-+  -|..-.                  ....+.|++|+..+.|.-.|..|++-  |..
T Consensus       129 ~r~~c~eCgk~ysT~snLsrHkQ--~H~~~~------------------s~ka~~C~~C~K~YvSmpALkMHirT--H~l  186 (279)
T KOG2462|consen  129 PRYKCPECGKSYSTSSNLSRHKQ--THRSLD------------------SKKAFSCKYCGKVYVSMPALKMHIRT--HTL  186 (279)
T ss_pred             Cceeccccccccccccccchhhc--cccccc------------------ccccccCCCCCceeeehHHHhhHhhc--cCC
Confidence            33449999999988888877644  222111                  12244566666666555555555442  110


Q ss_pred             HHHHhhh-----------ccC-----CCC-cccCCccccccCCHHHHHHhhc
Q 047603          198 LQRAKCT-----------LKG-----GGE-QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       198 ~~k~~e~-----------l~g-----~~~-~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                        .-.+.           |.|     .++ .|-|..|+..|-..++|+.||+
T Consensus       187 --~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQ  236 (279)
T KOG2462|consen  187 --PCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQ  236 (279)
T ss_pred             --CcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHH
Confidence              00000           001     233 5669999999999999999997

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=94.61  E-value=0.02  Score=52.65  Aligned_cols=100  Identities=18%  Similarity=0.277  Sum_probs=66.2

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCC-c---cccccc-cccCCcccccccccCccCCHHHHHHHhchhh
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGN-S---LVKMSL-VKVGEKQTWCRLCNIGFSSEELFRLHLNAKK  194 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~-~---~~~p~~-~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkK  194 (259)
                      +-|++|+....|.-.|.-|+.-  |.--.+=..=++. +   +.+--. .=++.++|-|..|+..|....+|..|++---
T Consensus       162 ~~C~~C~K~YvSmpALkMHirT--H~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS  239 (279)
T KOG2462|consen  162 FSCKYCGKVYVSMPALKMHIRT--HTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHS  239 (279)
T ss_pred             ccCCCCCceeeehHHHhhHhhc--cCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhc
Confidence            4599999999999999999863  3311100000000 0   000000 0135678999999999999999999887311


Q ss_pred             HHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcch
Q 047603          195 HKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGK  234 (259)
Q Consensus       195 H~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~Gk  234 (259)
                                   ....|-|..|..+|--..-|..|+.+.
T Consensus       240 -------------~~K~~qC~~C~KsFsl~SyLnKH~ES~  266 (279)
T KOG2462|consen  240 -------------DVKKHQCPRCGKSFALKSYLNKHSESA  266 (279)
T ss_pred             -------------CCccccCcchhhHHHHHHHHHHhhhhc
Confidence                         222577999999999888998888654

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=94.47  E-value=0.079  Score=46.55  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=32.6

Q ss_pred             CCcccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603          209 GEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE  244 (259)
Q Consensus       209 ~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~  244 (259)
                      .++|-|.+|+-.-+++..|..|..||||+.+|..-+
T Consensus        51 ~G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarra   86 (222)
T KOG0227|consen   51 LGKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRA   86 (222)
T ss_pred             CcceeehhhhhhhcchhhhhhhhccchhhHHHHHHH
Confidence            457889999999999999999999999999987754

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=94.36  E-value=0.029  Score=53.39  Aligned_cols=32  Identities=28%  Similarity=0.554  Sum_probs=28.5

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ  199 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~  199 (259)
                      .+.+||..|+-.|.....|..|+.||.|.+..
T Consensus       236 ~~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~  267 (470)
T COG5188         236 FPKVYCVKCGREFSRSKVFEYHLEGKRHCKEG  267 (470)
T ss_pred             ccceeeHhhhhHhhhhHHHHHHHhhhhhhhhh
Confidence            34679999999999999999999999999853

>KOG3408 consensus U1-like Zn-finger-containing protein, probabl erole in RNA processing/splicing [RNA processing and modification]

Probab=94.28  E-value=0.023  Score=46.35  Aligned_cols=35  Identities=26%  Similarity=0.434  Sum_probs=32.8

Q ss_pred             CCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603          119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL  153 (259)
Q Consensus       119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~  153 (259)
                      .+||-.|.--|.+...++.|+.+|.|++.++.|..
T Consensus        57 qfyCi~CaRyFi~~~~l~~H~ktK~HKrRvK~l~~   91 (129)
T KOG3408|consen   57 QFYCIECARYFIDAKALKTHFKTKVHKRRVKELRE   91 (129)
T ss_pred             eeehhhhhhhhcchHHHHHHHhccHHHHHHHhccc
Confidence            38899999999999999999999999999998864

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=94.15  E-value=0.061  Score=52.29  Aligned_cols=90  Identities=21%  Similarity=0.302  Sum_probs=63.4

Q ss_pred             CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHH
Q 047603          118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKA  197 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~  197 (259)
                      .++.|.||++.+.....|-+|-=.                    -++   -..+.|.-|+..|++..+|.+|.+  +|+-
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~--------------------RIV---~vEYrCPEC~KVFsCPANLASHRR--WHKP  320 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCP--------------------RIV---HVEYRCPECDKVFSCPANLASHRR--WHKP  320 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCC--------------------eeE---EeeecCCcccccccCchhhhhhhc--ccCC
Confidence            334499999999999999998221                    111   235679999999999999999987  5554


Q ss_pred             HHHHh-----------h-------hcc-C---CCCcccCCccccccCCHHHHHHhhc
Q 047603          198 LQRAK-----------C-------TLK-G---GGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       198 ~~k~~-----------e-------~l~-g---~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .-++.           +       .-+ |   ..+.|-|.+|...|..+..|..|..
T Consensus       321 R~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHql  377 (500)
T KOG3993|consen  321 RPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQL  377 (500)
T ss_pred             chhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHH
Confidence            32211           0       001 1   2336669999999999999987754

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.02  E-value=0.025  Score=55.49  Aligned_cols=33  Identities=27%  Similarity=0.603  Sum_probs=31.7

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      +||-+|+.+|-|+.++.-|..+|+|+.+|+.|.
T Consensus       293 lyC~vCnKsFKseKq~kNHEnSKKHkenv~eLr  325 (508)
T KOG0717|consen  293 LYCVVCNKSFKSEKQLKNHENSKKHKENVAELR  325 (508)
T ss_pred             eEEeeccccccchHHHHhhHHHHHHHHHHHHHH
Confidence            789999999999999999999999999999876

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=93.92  E-value=0.056  Score=58.71  Aligned_cols=121  Identities=17%  Similarity=0.295  Sum_probs=87.6

Q ss_pred             CCC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCcc-cccccc-ccCCcccccccccCccCCHHHHHHHhchhhH
Q 047603          119 SNF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSL-VKMSLV-KVGEKQTWCRLCNIGFSSEELFRLHLNAKKH  195 (259)
Q Consensus       119 ~~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~-~~p~~~-~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH  195 (259)
                      ..+ |..|+..+.-.+.|.-|...|-|.....-...+.+.. .....+ ..+...+-|..|++.++....+-.|+..-+|
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h  543 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLH  543 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhh
Confidence            345 9999999999999999999998888773333333210 001011 1223466799999999999999999999999


Q ss_pred             HHHHHHh-hh-------c-----------------cCC----CC-cccCCccccccCCHHHHHHhhcchHHHHH
Q 047603          196 KALQRAK-CT-------L-----------------KGG----GE-QKWCKLCDVWCPNGDAFKMHLDGKNHILR  239 (259)
Q Consensus       196 ~~~~k~~-e~-------l-----------------~g~----~~-~~~C~lCnV~~~Se~~m~~HL~GkKH~~~  239 (259)
                      +..++.. +.       +                 .|.    .. .+.|++|+-..|=..+++.|+...+|-.+
T Consensus       544 ~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmtss~~s~~  617 (1406)
T KOG1146|consen  544 RNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMTASPSSSP  617 (1406)
T ss_pred             HHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccccCCCCCC
Confidence            9974332 10       0                 011    12 44499999999999999999999999877

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=93.52  E-value=0.033  Score=53.15  Aligned_cols=97  Identities=20%  Similarity=0.361  Sum_probs=60.5

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhH-h---cCCc---cccccccccCCcccccccccCccCCHHHHHHHhchhh
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELK-L---DGNS---LVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKK  194 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~-~---~~~~---~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkK  194 (259)
                      |..|.--|.....|-+|+.-+--..+ ..++ .   .+-+   +...- +..--.-+.|.+|+++|.+.+.|..|++- |
T Consensus       210 Cp~Cg~~F~~~tkl~DH~rRqt~l~~-n~fqC~~C~KrFaTeklL~~H-v~rHvn~ykCplCdmtc~~~ssL~~H~r~-r  286 (467)
T KOG3608|consen  210 CPHCGELFRTKTKLFDHLRRQTELNT-NSFQCAQCFKRFATEKLLKSH-VVRHVNCYKCPLCDMTCSSASSLTTHIRY-R  286 (467)
T ss_pred             cchHHHHhccccHHHHHHHhhhhhcC-CchHHHHHHHHHhHHHHHHHH-HHHhhhcccccccccCCCChHHHHHHHHh-h
Confidence            99999999999999999752210000 0000 0   0000   00000 00012345699999999999888888763 2


Q ss_pred             HHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          195 HKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       195 H~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      |.+           +..|-|+-|+..|..++.++.|+.
T Consensus       287 Hs~-----------dkpfKCd~Cd~~c~~esdL~kH~~  313 (467)
T KOG3608|consen  287 HSK-----------DKPFKCDECDTRCVRESDLAKHVQ  313 (467)
T ss_pred             hcc-----------CCCccccchhhhhccHHHHHHHHH
Confidence            322           336779999999999999999987

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=93.50  E-value=0.036  Score=51.74  Aligned_cols=34  Identities=21%  Similarity=0.516  Sum_probs=29.6

Q ss_pred             CCCCCCCCcccCC-CHHHHHHHhcCCchHHHHHHh
Q 047603          118 DSNFCSICHVPCS-SAFNYNQHLKGRKHKAKLQEL  151 (259)
Q Consensus       118 ~~~~C~lC~V~~t-Se~~l~~Hl~GKKHkkk~~~l  151 (259)
                      +..||++|++++. +......|-.|++|+.+|+..
T Consensus         9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~Kr   43 (336)
T KOG0150|consen    9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVAKR   43 (336)
T ss_pred             cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHHHH
Confidence            4579999999995 677889999999999999864

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=93.48  E-value=0.051  Score=55.97  Aligned_cols=101  Identities=19%  Similarity=0.371  Sum_probs=67.6

Q ss_pred             CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccc-cccCCcccccccccCccCCHHHHHHHhchhhHH
Q 047603          118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSL-VKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHK  196 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~-~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~  196 (259)
                      +.|-|.+|-.+|.+..+|..|..-  |+.       +....  -.. .......|.|.-|...|-=...|..|++     
T Consensus       239 ~nfsC~lCsytFAyRtQLErhm~~--hkp-------g~dqa--~sltqsa~lRKFKCtECgKAFKfKHHLKEHlR-----  302 (1007)
T KOG3623|consen  239 PNFSCMLCSYTFAYRTQLERHMQL--HKP-------GGDQA--ISLTQSALLRKFKCTECGKAFKFKHHLKEHLR-----  302 (1007)
T ss_pred             CCCcchhhhhhhhhHHHHHHHHHh--hcC-------CCccc--ccccchhhhccccccccchhhhhHHHHHhhhe-----
Confidence            334499999999999999888762  221       00000  000 0011346779999998887766666665     


Q ss_pred             HHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcchHHHHHHHH
Q 047603          197 ALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYE  242 (259)
Q Consensus       197 ~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~  242 (259)
                              +..+-..|-|.-|...|.....|.+||.+||=.-.+-.
T Consensus       303 --------IHSGEKPfeCpnCkKRFSHSGSySSHmSSKKCIsli~v  340 (1007)
T KOG3623|consen  303 --------IHSGEKPFECPNCKKRFSHSGSYSSHMSSKKCISLILV  340 (1007)
T ss_pred             --------eecCCCCcCCcccccccccCCcccccccccchhhhhcc
Confidence                    22233356699999999999999999999998754433

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.30  E-value=0.046  Score=30.53  Aligned_cols=21  Identities=14%  Similarity=0.399  Sum_probs=17.1

Q ss_pred             ccCCccccccCCHHHHHHhhc
Q 047603          212 KWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      |.|.+|+..|.+...|..|+.
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHH
Confidence            459999999999999999985

...

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=93.21  E-value=0.053  Score=52.85  Aligned_cols=34  Identities=29%  Similarity=0.512  Sum_probs=30.4

Q ss_pred             cccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE  244 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~  244 (259)
                      ...|.+|||...|+..+-+|++|+||+..|+.+.
T Consensus       493 kkqcslcnvlissevylfshvkgrkhqqal~e~~  526 (672)
T KOG4722|consen  493 KKQCSLCNVLISSEVYLFSHVKGRKHQQALNELL  526 (672)
T ss_pred             hhccchhhhhhhhhhhhhhhhcchhHHHHHHHHh
Confidence            3449999999999999999999999999988763

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=93.16  E-value=0.16  Score=43.51  Aligned_cols=74  Identities=26%  Similarity=0.419  Sum_probs=57.5

Q ss_pred             cccccccCccCCHHHHHHHhchhhHHHHHHHhhh-------------------------------------c-----cC-
Q 047603          171 TWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCT-------------------------------------L-----KG-  207 (259)
Q Consensus       171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~-------------------------------------l-----~g-  207 (259)
                      |.|.+|....--+..++.|+.++-|+..++-..+                                     +     .| 
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k~~~dFLqEy~~nk~KKt~~r~~~~~~~~~~~~~ie~D~~~gi   80 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPKKTMDFLQEYMVNKFKKTESRRQQLENSSEASKQIEQDVMEGI   80 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcccccccchhhhc
Confidence            5699999999899999999999999986654210                                     0     01 


Q ss_pred             -------CCCcccCCccccccCCH-HHHHHhhcchHHHHHHHHHH
Q 047603          208 -------GGEQKWCKLCDVWCPNG-DAFKMHLDGKNHILRLYEIE  244 (259)
Q Consensus       208 -------~~~~~~C~lCnV~~~Se-~~m~~HL~GkKH~~~lk~~~  244 (259)
                             +-+.++|..|++..... ..++.||.+.-|..+-+...
T Consensus        81 g~ehfm~KVEa~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~~~  125 (165)
T PF04988_consen   81 GQEHFMKKVEAAHCSACDVFIPMQHSSVQKHLKSQDHNKNRRAMM  125 (165)
T ss_pred             CHHHHHHHHHHhhhhHhhhhccCcHHHHHHHhccHHHHhhHHHHH
Confidence                   13477899999988764 48899999999998876543

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=93.08  E-value=0.06  Score=30.03  Aligned_cols=19  Identities=32%  Similarity=0.669  Sum_probs=16.1

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+.+|.+...+..|+.
T Consensus         3 C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    3 CPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             -SSTS-EESSHHHHHHHHH
T ss_pred             CcCCCCcCCcHHHHHHHHH
Confidence            9999999999999999975

...

>PHA00733 hypothetical protein

Probab=93.04  E-value=0.079  Score=43.49  Aligned_cols=80  Identities=18%  Similarity=0.163  Sum_probs=57.7

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ  199 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~  199 (259)
                      ..|.+|+..+.....+..|-.=++|.       .           .....++.|..|...|.+...+..|..-  |    
T Consensus        41 ~~~~~~~~~~~~~~~l~~~~~l~~~~-------~-----------~~~~kPy~C~~Cgk~Fss~s~L~~H~r~--h----   96 (128)
T PHA00733         41 LIRAVVKTLIYNPQLLDESSYLYKLL-------T-----------SKAVSPYVCPLCLMPFSSSVSLKQHIRY--T----   96 (128)
T ss_pred             HHHHHHhhhccChhhhcchHHHHhhc-------c-----------cCCCCCccCCCCCCcCCCHHHHHHHHhc--C----
Confidence            34999999999888887773311221       0           0113457799999999999999887652  1    


Q ss_pred             HHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          200 RAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       200 k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                               ...+-|.+|...|.....|..|+.
T Consensus        97 ---------~~~~~C~~CgK~F~~~~sL~~H~~  120 (128)
T PHA00733         97 ---------EHSKVCPVCGKEFRNTDSTLDHVC  120 (128)
T ss_pred             ---------CcCccCCCCCCccCCHHHHHHHHH
Confidence                     013679999999999999998864

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=93.03  E-value=0.097  Score=46.70  Aligned_cols=18  Identities=22%  Similarity=0.707  Sum_probs=9.5

Q ss_pred             CCCCcccCCCHHHHHHHh
Q 047603          122 CSICHVPCSSAFNYNQHL  139 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl  139 (259)
                      |..|...|+...+|..|.
T Consensus       148 ct~cgkgfndtfdlkrh~  165 (267)
T KOG3576|consen  148 CTFCGKGFNDTFDLKRHT  165 (267)
T ss_pred             HhhccCcccchhhhhhhh
Confidence            555555555555554443

>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.91  E-value=0.065  Score=37.09  Aligned_cols=27  Identities=22%  Similarity=0.650  Sum_probs=23.6

Q ss_pred             CCCCCCCcccCCCHHHHHHHhcCCchHHHH
Q 047603          119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKL  148 (259)
Q Consensus       119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~  148 (259)
                      .-||+.|.+.+.   .|..|+.+++|++=+
T Consensus         5 ~GYCE~C~~ky~---~l~~Hi~s~~Hr~FA   31 (49)
T PF07535_consen    5 PGYCENCRVKYD---DLEEHIQSEKHRKFA   31 (49)
T ss_pred             CccCccccchhh---hHHHHhCCHHHHHHH
Confidence            479999999987   489999999999754

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.75  E-value=0.1  Score=47.16  Aligned_cols=36  Identities=19%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             CCCcccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603          208 GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE  244 (259)
Q Consensus       208 ~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~  244 (259)
                      ..+.+.|-|||+... +..+..|++|++|+.++.++-
T Consensus        32 ~sgql~C~vCn~piK-p~lW~vHvnsKkHre~id~lK   67 (264)
T KOG3032|consen   32 ESGQLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLK   67 (264)
T ss_pred             CCCCeeEEEecCccc-HHHHHHHhccHHHHHHHHHHH
Confidence            456888999999999 999999999999999998875

>smart00586 ZnF_DBF Zinc finger in DBF-like proteins

Probab=92.67  E-value=0.047  Score=37.81  Aligned_cols=28  Identities=21%  Similarity=0.533  Sum_probs=23.8

Q ss_pred             CCCCCCCcccCCCHHHHHHHhcCCchHHHHH
Q 047603          119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQ  149 (259)
Q Consensus       119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~  149 (259)
                      .-||++|.+.|.   .|..|+.+++|++=+.
T Consensus         5 ~GYCE~Cr~kfd---~l~~Hi~s~~Hr~FA~   32 (49)
T smart00586        5 PGYCENCREKYD---DLETHLLSEKHRRFAE   32 (49)
T ss_pred             CcccccHhHHHh---hHHHHhccHHHHHHHc
Confidence            379999999986   6899999999997553

>PLN02748 tRNA dimethylallyltransferase

Probab=92.57  E-value=0.1  Score=51.74  Aligned_cols=33  Identities=33%  Similarity=0.647  Sum_probs=30.0

Q ss_pred             CCCCCCcc-cCCCHHHHHHHhcCCchHHHHHHhH
Q 047603          120 NFCSICHV-PCSSAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       120 ~~C~lC~V-~~tSe~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      +.|++|+. ++.++..-+.|+.|++|+++++...
T Consensus       419 ~~Ce~C~~~~~~G~~eW~~Hlksr~Hk~~~~~~~  452 (468)
T PLN02748        419 YVCEACGNKVLRGAHEWEQHKQGRGHRKRVQRLK  452 (468)
T ss_pred             ccccCCCCcccCCHHHHHHHhcchHHHHHHhHHH
Confidence            44999998 8999999999999999999998664

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.43  E-value=0.064  Score=30.34  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             ccCCccccccCCHHHHHHhhcc
Q 047603          212 KWCKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~G  233 (259)
                      |-|..|+..|.+...|..|++-
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            4599999999999999999863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=92.33  E-value=0.089  Score=54.29  Aligned_cols=83  Identities=17%  Similarity=0.422  Sum_probs=59.7

Q ss_pred             CCCCCC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhh
Q 047603          116 QADSNF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKK  194 (259)
Q Consensus       116 ~~~~~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkK  194 (259)
                      ..+..| |++|+..|.-...|..|-.           ..            .+..++-|.||...|--...|..|.+   
T Consensus       890 te~gmyaCDqCDK~FqKqSSLaRHKY-----------EH------------sGqRPyqC~iCkKAFKHKHHLtEHkR---  943 (1007)
T KOG3623|consen  890 TEDGMYACDQCDKAFQKQSSLARHKY-----------EH------------SGQRPYQCIICKKAFKHKHHLTEHKR---  943 (1007)
T ss_pred             CccccchHHHHHHHHHhhHHHHHhhh-----------hh------------cCCCCcccchhhHhhhhhhhhhhhhh---
Confidence            334467 9999999988888876622           11            12235679999998887766665543   


Q ss_pred             HHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcch
Q 047603          195 HKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGK  234 (259)
Q Consensus       195 H~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~Gk  234 (259)
                                |..+-..|-|+-|...|.....|.+||+-+
T Consensus       944 ----------LHSGEKPfQCdKClKRFSHSGSYSQHMNHR  973 (1007)
T KOG3623|consen  944 ----------LHSGEKPFQCDKCLKRFSHSGSYSQHMNHR  973 (1007)
T ss_pred             ----------hccCCCcchhhhhhhhcccccchHhhhccc
Confidence                      333334677999999999999999999843

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=92.31  E-value=0.081  Score=31.11  Aligned_cols=22  Identities=18%  Similarity=0.210  Sum_probs=20.0

Q ss_pred             ccCCccccccCCHHHHHHhhcc
Q 047603          212 KWCKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~G  233 (259)
                      |.|..|+..|.+...|..|++-
T Consensus         2 ~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    2 FECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             EEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCccCCccCChhHHHHHhHH
Confidence            5699999999999999999953

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=91.65  E-value=0.11  Score=41.72  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=33.5

Q ss_pred             CCcccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603          209 GEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE  244 (259)
Q Consensus       209 ~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~  244 (259)
                      .+.+||--|...|-++..+..|.+|+=|+++++++.
T Consensus        53 lGqhYCieCaryf~t~~aL~~HkkgkvHkRR~KelR   88 (126)
T COG5112          53 LGQHYCIECARYFITEKALMEHKKGKVHKRRAKELR   88 (126)
T ss_pred             CceeeeehhHHHHHHHHHHHHHhccchhHHHHHHHh
Confidence            458999999999999999999999999999999873

>COG5112 UFD2 U1-like Zn-finger-containing protein [General function prediction only]

Probab=91.43  E-value=0.12  Score=41.39  Aligned_cols=35  Identities=26%  Similarity=0.455  Sum_probs=32.7

Q ss_pred             CCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603          119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL  153 (259)
Q Consensus       119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~  153 (259)
                      .+||--|.--|.++..|..|..|+-|++.++.+..
T Consensus        55 qhYCieCaryf~t~~aL~~HkkgkvHkRR~KelRe   89 (126)
T COG5112          55 QHYCIECARYFITEKALMEHKKGKVHKRRAKELRE   89 (126)
T ss_pred             eeeeehhHHHHHHHHHHHHHhccchhHHHHHHHhc
Confidence            48999999999999999999999999999998874

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.14  E-value=0.1  Score=29.45  Aligned_cols=19  Identities=37%  Similarity=0.749  Sum_probs=18.1

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.+...|..|+.
T Consensus         3 C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    3 CPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             ETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHh
Confidence            9999999999999999975

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]

Probab=90.26  E-value=0.13  Score=49.17  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=32.0

Q ss_pred             CcccCCccccccCCHHHHHHhhcchHHHHHHHHHHH
Q 047603          210 EQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEK  245 (259)
Q Consensus       210 ~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~~  245 (259)
                      ..+||..|...|....+|+.|+.||.|.+..+.-++
T Consensus       237 ~~~YC~~C~r~f~~~~VFe~Hl~gK~H~k~~~~~~~  272 (470)
T COG5188         237 PKVYCVKCGREFSRSKVFEYHLEGKRHCKEGQGKEE  272 (470)
T ss_pred             cceeeHhhhhHhhhhHHHHHHHhhhhhhhhhhhhhH
Confidence            489999999999999999999999999988776544

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=90.21  E-value=0.24  Score=43.31  Aligned_cols=36  Identities=19%  Similarity=0.225  Sum_probs=32.2

Q ss_pred             CCCcccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603          208 GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI  243 (259)
Q Consensus       208 ~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~  243 (259)
                      -.+.|-|.+|+-.--++..+..|+.||||+.++..-
T Consensus        50 h~Gk~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rr   85 (222)
T COG5246          50 HTGKYVCLLCKTKHLTEMSYVKHREGKKHKENSSRR   85 (222)
T ss_pred             CCCcEEeeeeccccccHHHHHHhhccchhhhhHHHH
Confidence            355788999999999999999999999999988665

>KOG4722 consensus Zn-finger protein [General function prediction only]

Probab=90.02  E-value=0.23  Score=48.61  Aligned_cols=31  Identities=32%  Similarity=0.518  Sum_probs=28.0

Q ss_pred             ccccccCccCCHHHHHHHhchhhHHHHHHHh
Q 047603          172 WCRLCNIGFSSEELFRLHLNAKKHKALQRAK  202 (259)
Q Consensus       172 ~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~  202 (259)
                      -|.+|||-.+|+..+-+|.+|+||+..+..+
T Consensus       495 qcslcnvlissevylfshvkgrkhqqal~e~  525 (672)
T KOG4722|consen  495 QCSLCNVLISSEVYLFSHVKGRKHQQALNEL  525 (672)
T ss_pred             ccchhhhhhhhhhhhhhhhcchhHHHHHHHH
Confidence            5999999999999999999999999976543

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=89.57  E-value=0.21  Score=29.27  Aligned_cols=20  Identities=25%  Similarity=0.365  Sum_probs=18.5

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .|.+|+.+|.+...|..|..
T Consensus         3 ~C~~C~~~F~~~~~l~~H~~   22 (27)
T PF13912_consen    3 ECDECGKTFSSLSALREHKR   22 (27)
T ss_dssp             EETTTTEEESSHHHHHHHHC
T ss_pred             CCCccCCccCChhHHHHHhH
Confidence            39999999999999999984

>smart00355 ZnF_C2H2 zinc finger

Probab=88.72  E-value=0.38  Score=26.81  Aligned_cols=21  Identities=24%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             ccCCccccccCCHHHHHHhhc
Q 047603          212 KWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      +-|..|+..|++...|..|+.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHH
Confidence            359999999999999999987

>KOG0227 consensus Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=88.49  E-value=0.26  Score=43.38  Aligned_cols=35  Identities=23%  Similarity=0.445  Sum_probs=30.4

Q ss_pred             CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhH
Q 047603          118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      ..+-|.||+..-+++..+..|.+||||+.|++...
T Consensus        52 G~yeCkLClT~H~ne~Syl~HtqGKKHq~Nlarra   86 (222)
T KOG0227|consen   52 GKYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRA   86 (222)
T ss_pred             cceeehhhhhhhcchhhhhhhhccchhhHHHHHHH
Confidence            33449999999999999999999999999997544

>KOG3454 consensus U1 snRNP-specific protein C [RNA processing and modification]

Probab=88.01  E-value=0.36  Score=41.35  Aligned_cols=32  Identities=22%  Similarity=0.472  Sum_probs=27.4

Q ss_pred             ccccccccCccC--CHHHHHHHhchhhHHHHHHH
Q 047603          170 QTWCRLCNIGFS--SEELFRLHLNAKKHKALQRA  201 (259)
Q Consensus       170 ~~~C~lCnv~~~--S~~~l~sHl~GkKH~~~~k~  201 (259)
                      .+||+-|++.++  |.+.=..|+.|++|+.+.+.
T Consensus         3 RYyCDYCdt~LthDslsvRK~H~~GrkH~~nvk~   36 (165)
T KOG3454|consen    3 RYYCDYCDTYLTHDSLSVRKTHCGGRKHKDNVKD   36 (165)
T ss_pred             cchhhhhhhhhhcccHHHHHhhhhhHHHHHHHHH
Confidence            578999998885  77888999999999997654

>PF04988 AKAP95: A-kinase anchoring protein 95 (AKAP95); InterPro: IPR007071 A-kinase (or PKA)-anchoring protein AKAP95 is implicated in mitotic chromosome condensation by acting as a targeting molecule for the condensin complex

Probab=87.71  E-value=1.1  Score=38.38  Aligned_cols=82  Identities=20%  Similarity=0.367  Sum_probs=56.6

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhc---------------C---Cc----------ccccccccc-----
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLD---------------G---NS----------LVKMSLVKV-----  166 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~---------------~---~~----------~~~p~~~~~-----  166 (259)
                      +.|.+|....-.+..+..|+.++-|+..+.-+...               +   ..          ...+...++     
T Consensus         1 F~Cs~CKfrtf~~~ei~~HleS~~H~E~~~~i~tkl~k~~~dFLqEy~~nk~KKt~~r~~~~~~~~~~~~~ie~D~~~gi   80 (165)
T PF04988_consen    1 FTCSFCKFRTFEEKEIEKHLESKFHKETLKYIQTKLPKKTMDFLQEYMVNKFKKTESRRQQLENSSEASKQIEQDVMEGI   80 (165)
T ss_pred             CccceeeeecccHHHHHHHHccchHHHHHHHHHhcCChHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcccccccchhhhc
Confidence            35999999999999999999999999877755310               0   00          000000011     


Q ss_pred             C-------CcccccccccCccCC-HHHHHHHhchhhHHHHHHH
Q 047603          167 G-------EKQTWCRLCNIGFSS-EELFRLHLNAKKHKALQRA  201 (259)
Q Consensus       167 ~-------~~~~~C~lCnv~~~S-~~~l~sHl~GkKH~~~~k~  201 (259)
                      +       -...+|.-|++.... ...++.|+..-.|..+.+.
T Consensus        81 g~ehfm~KVEa~hCsACd~~IP~~~~~vQ~Hl~S~~H~~Nrr~  123 (165)
T PF04988_consen   81 GQEHFMKKVEAAHCSACDVFIPMQHSSVQKHLKSQDHNKNRRA  123 (165)
T ss_pred             CHHHHHHHHHHhhhhHhhhhccCcHHHHHHHhccHHHHhhHHH
Confidence            0       124589999999865 4678999999999886553

The protein contains two zinc fingers which are thought to mediate the binding of AKAP95 to DNA [].; GO: 0003677 DNA binding, 0005634 nucleus

>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]

Probab=87.31  E-value=0.4  Score=44.99  Aligned_cols=32  Identities=25%  Similarity=0.504  Sum_probs=27.2

Q ss_pred             cccccccccCccC-CHHHHHHHhchhhHHHHHH
Q 047603          169 KQTWCRLCNIGFS-SEELFRLHLNAKKHKALQR  200 (259)
Q Consensus       169 ~~~~C~lCnv~~~-S~~~l~sHl~GkKH~~~~k  200 (259)
                      ...||+.|++++. .......|-+|++|+.+++
T Consensus         9 ~kkfCdyCKiWi~dN~~Sv~~He~GkrHke~V~   41 (336)
T KOG0150|consen    9 PKKFCDYCKIWIKDNPASVRFHERGKRHKENVA   41 (336)
T ss_pred             cchhhhhhhhhhcCChHHHHhHhhhhHHHHHHH
Confidence            4689999999995 5677899999999999653

>KOG3032 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.10  E-value=0.48  Score=42.88  Aligned_cols=34  Identities=26%  Similarity=0.646  Sum_probs=31.0

Q ss_pred             CCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603          119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL  153 (259)
Q Consensus       119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~  153 (259)
                      ...|.|||+..- +..-..|..||+|+.++..|+.
T Consensus        35 ql~C~vCn~piK-p~lW~vHvnsKkHre~id~lKs   68 (264)
T KOG3032|consen   35 QLVCRVCNVPIK-PSLWDVHVNSKKHREAIDSLKS   68 (264)
T ss_pred             CeeEEEecCccc-HHHHHHHhccHHHHHHHHHHHh
Confidence            355999999998 9999999999999999999984

>smart00355 ZnF_C2H2 zinc finger

Probab=87.07  E-value=0.5  Score=26.30  Aligned_cols=19  Identities=21%  Similarity=0.489  Sum_probs=18.1

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |..|+.+|.+...++.|..
T Consensus         3 C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        3 CPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCcchhCCHHHHHHHHH
Confidence            9999999999999999986

>COG5136 U1 snRNP-specific protein C [RNA processing and modification]

Probab=86.45  E-value=0.17  Score=43.37  Aligned_cols=33  Identities=21%  Similarity=0.340  Sum_probs=27.9

Q ss_pred             CCCCCCCcccCC--CHHHHHHHhcCCchHHHHHHh
Q 047603          119 SNFCSICHVPCS--SAFNYNQHLKGRKHKAKLQEL  151 (259)
Q Consensus       119 ~~~C~lC~V~~t--Se~~l~~Hl~GKKHkkk~~~l  151 (259)
                      ..||+.|+++++  +.++...|+.|++|....+..
T Consensus         3 RY~CeyC~~~LthD~lsvRk~H~~G~~H~~~~~dY   37 (188)
T COG5136           3 RYFCEYCNKMLTHDRLSVRKMHCGGAKHGLMRKDY   37 (188)
T ss_pred             chHHHHHHHHHhccHHHHHHHhhhhHHHHHHHHHH
Confidence            466999999997  557889999999999888754

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=85.29  E-value=0.51  Score=46.12  Aligned_cols=70  Identities=19%  Similarity=0.275  Sum_probs=46.8

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccc---------c--ccccc-cCCcccccccccCccCCHHHH
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLV---------K--MSLVK-VGEKQTWCRLCNIGFSSEELF  186 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~---------~--p~~~~-~~~~~~~C~lCnv~~~S~~~l  186 (259)
                      .| |.-|+..|+.+.+|-+|-.  .|+.+-++-..+.++-.         +  +.... ..+.-|-|.+|...|-.+..|
T Consensus       295 EYrCPEC~KVFsCPANLASHRR--WHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYL  372 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRR--WHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYL  372 (500)
T ss_pred             eecCCcccccccCchhhhhhhc--ccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHH
Confidence            57 9999999999999999965  67766654433222100         0  00000 112245599999999999999


Q ss_pred             HHHhc
Q 047603          187 RLHLN  191 (259)
Q Consensus       187 ~sHl~  191 (259)
                      ..|..
T Consensus       373 rKHql  377 (500)
T KOG3993|consen  373 RKHQL  377 (500)
T ss_pred             HHhHH
Confidence            88855

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=84.32  E-value=0.47  Score=49.76  Aligned_cols=51  Identities=20%  Similarity=0.397  Sum_probs=43.8

Q ss_pred             ccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcchH
Q 047603          172 WCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGKN  235 (259)
Q Consensus       172 ~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkK  235 (259)
                      -|-+|.....+...|+.||+-             ..+...|-|.||..-|+...+|..|+.+-|
T Consensus       607 qCiiC~rVlSC~saLqmHyrt-------------HtGERPFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  607 QCIICLRVLSCPSALQMHYRT-------------HTGERPFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             ceeeeeecccchhhhhhhhhc-------------ccCcCccccccccchhccccchhhcccccc
Confidence            599999999999999999982             234447779999999999999999998754

>COG5246 PRP11 Splicing factor 3a, subunit 2 [RNA processing and modification]

Probab=83.55  E-value=0.85  Score=39.97  Aligned_cols=34  Identities=24%  Similarity=0.503  Sum_probs=30.2

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL  153 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~  153 (259)
                      +-|.||+..--++..+..|..||||+-++.....
T Consensus        54 ~vC~LC~T~H~~e~Sy~~H~~GKKH~~n~~rrs~   87 (222)
T COG5246          54 YVCLLCKTKHLTEMSYVKHREGKKHKENSSRRSE   87 (222)
T ss_pred             EEeeeeccccccHHHHHHhhccchhhhhHHHHHH
Confidence            4499999999999999999999999999976543

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=83.38  E-value=0.93  Score=49.71  Aligned_cols=78  Identities=22%  Similarity=0.388  Sum_probs=59.2

Q ss_pred             cccccccccCccCCHHHHHHHhchhhHHHHH---HHhhh---------ccCCCCcccCCccccccCCHHHHHHhhcchHH
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQ---RAKCT---------LKGGGEQKWCKLCDVWCPNGDAFKMHLDGKNH  236 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~---k~~e~---------l~g~~~~~~C~lCnV~~~Se~~m~~HL~GkKH  236 (259)
                      ..+.|..|+-.+.-.+.|..|.+.+-|.-.-   ++-..         ...+...+-|.+|+++++....+-.||..-+|
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS~~h  543 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQSDLH  543 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHHHhh
Confidence            4567999999999999999998876665532   11111         11234467799999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 047603          237 ILRLYEIEKN  246 (259)
Q Consensus       237 ~~~lk~~~~~  246 (259)
                      +.+++..++.
T Consensus       544 ~~~lee~~~~  553 (1406)
T KOG1146|consen  544 RNELEEAEEN  553 (1406)
T ss_pred             HHHHHHHHhc
Confidence            9997766544

>PHA00732 hypothetical protein

Probab=81.12  E-value=1.8  Score=32.62  Aligned_cols=46  Identities=15%  Similarity=0.347  Sum_probs=35.2

Q ss_pred             cccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcch
Q 047603          171 TWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDGK  234 (259)
Q Consensus       171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~Gk  234 (259)
                      +.|..|+..|++...+..|.... |.              .+-|+.|+..|.   .+..|+..+
T Consensus         2 y~C~~Cgk~F~s~s~Lk~H~r~~-H~--------------~~~C~~CgKsF~---~l~~H~~~~   47 (79)
T PHA00732          2 FKCPICGFTTVTLFALKQHARRN-HT--------------LTKCPVCNKSYR---RLNQHFYSQ   47 (79)
T ss_pred             ccCCCCCCccCCHHHHHHHhhcc-cC--------------CCccCCCCCEeC---Chhhhhccc
Confidence            46999999999999999887521 21              135999999998   477787554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	259
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	2e-10

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4 Length = 127

 Score = 56.5 bits (135), Expect = 2e-10
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 11/118 (9%)

Query: 96  AECSSPELPESLDSHP-EHAIQADSNFCSICHVPCSSAFNYNQHLKGRKHKAKL------ 148
                P   ++++S   E++       C +C     S      H + RKH  K+      
Sbjct: 8   DALDLPVGKDAVNSLIRENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAI 67

Query: 149 ----QELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAK 202
                 +           +    ++   C +CN+ FSS  +   H   K H    R +
Sbjct: 68  NQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLR 125

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	259
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.6
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	99.58
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.23
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.2
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.05
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.01
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	97.95
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	97.93
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	97.92
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	97.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.84
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.8
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	97.75
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	97.72
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	97.65
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	97.65
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.57
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.54
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.5
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	97.45
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.45
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	97.44
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	97.43
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	97.37
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	97.36
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.36
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	97.33
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	97.24
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.05
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.99
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.91
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.9
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.9
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	96.89
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.83
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.82
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.81
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	96.79
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	96.77
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.69
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	96.68
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.54
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	96.52
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	96.45
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	96.43
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	96.41
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	96.41
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	96.41
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	96.38
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	96.36
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	96.29
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	96.27
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	96.27
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.24
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	96.23
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	96.18
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	96.17
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	96.15
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	96.09
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	96.06
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	96.05
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	95.85
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	95.81
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	95.81
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.78
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	95.72
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	95.69
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	95.6
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	95.57
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	95.49
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	95.32
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	95.12
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	95.02
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	94.79
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	94.61
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.57
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	94.55
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	94.54
2epa_A	72	Krueppel-like factor 10; transforming growth facto	94.48
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	94.32
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	94.3
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	94.3
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	94.22
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	93.88
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	93.67
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	93.28
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	93.17
2epa_A	72	Krueppel-like factor 10; transforming growth facto	93.08
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	92.73
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	92.55
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	92.41
4dgw_A	402	PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A	92.26
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	92.18
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	91.27
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	90.98
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	90.91
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	90.27
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	89.98
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	89.74
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	89.69
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.47
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	89.25
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	89.17
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	89.16
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	89.0
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.89
1ard_A	29	Yeast transcription factor ADR1; transcription reg	88.83
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	88.63
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	88.6
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	88.48
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	88.4
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	88.34
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	88.27
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	88.19
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	88.13
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	88.0
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.99
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	87.94
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	87.86
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	87.82
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	87.8
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.79
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	87.74
1ard_A	29	Yeast transcription factor ADR1; transcription reg	87.69
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.68
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	87.67
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	87.6
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	87.57
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.52
4f9c_B	144	Protein DBF4 homolog A; Ser/Thr protein kinase, tr	87.41
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	87.32
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	87.32
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.29
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	87.25
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	87.13
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	86.98
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	86.92
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.91
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	86.89
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	86.87
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.86
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	86.81
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.76
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.75
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	86.57
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	86.56
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	86.53
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.37
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.31
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	86.31
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	86.3
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	86.24
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	86.03
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	86.03
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.97
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	85.96
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	85.95
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.94
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	85.91
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	85.87
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	85.64
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.61
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	85.31
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.28
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	85.2
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	85.43
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	85.16
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	85.16
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.14
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	85.04
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	84.83
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	84.69
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	84.58
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	84.56
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.46
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.11
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	84.07
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	84.04
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	84.01
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.99
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	83.95
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.82
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.72
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.66
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.65
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	83.63
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	83.61
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	83.56
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	83.56
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.42
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	83.4
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	83.38
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	83.35
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.34
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	83.3
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	83.28
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	83.85
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	83.17
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	83.17
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.07
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	83.07
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	83.07
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.0
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	82.99
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.95
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.81
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	83.47
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.8
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.79
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.7
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	82.61
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	82.56
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	82.56
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	82.54
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	82.53
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.45
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	82.39
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	82.34
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	82.3
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	82.11
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	82.09
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	82.09
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	82.08
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	82.07
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	82.02
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.02
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.95
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	81.93
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.76
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	81.76
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	81.65
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	81.59
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.57
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	81.55
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	81.49
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	81.48
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.46
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.45
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	81.43
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	81.37
1paa_A	30	Yeast transcription factor ADR1; transcription reg	81.36
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	81.27
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.26
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.21
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	81.21
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.13
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.12
1paa_A	30	Yeast transcription factor ADR1; transcription reg	81.08
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.05
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.98
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.9
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.86
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.8
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.8
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	80.78
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	80.73
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	80.63
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.61
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.6
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	80.6
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.55
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	80.54
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.52
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.47
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	80.46
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	80.46
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	80.46
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.45
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	80.43
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	80.24
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	80.2
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.17
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	80.16
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	80.12
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	80.09
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.08
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.08
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	80.04
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	80.01

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.60  E-value=1e-15  Score=123.93  Aligned_cols=76  Identities=26%  Similarity=0.402  Sum_probs=64.6

Q ss_pred             cccccccccCccCCHHHHHHHhchhhHHHHHHHhhhc--------------------cCCCCcccCCccccccCCHHHHH
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTL--------------------KGGGEQKWCKLCDVWCPNGDAFK  228 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l--------------------~g~~~~~~C~lCnV~~~Se~~m~  228 (259)
                      ..++|.+|++.|+|..++..|+.|++|+.+++.....                    ......|||++|++.|+|+.++.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~  110 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAE  110 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHH
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHH
Confidence            3578999999999999999999999999987643210                    11244889999999999999999


Q ss_pred             HhhcchHHHHHHHHHH
Q 047603          229 MHLDGKNHILRLYEIE  244 (259)
Q Consensus       229 ~HL~GkKH~~~lk~~~  244 (259)
                      +|++|++|++++++++
T Consensus       111 ~H~~gk~H~~~~~~~~  126 (127)
T 1zu1_A          111 SHYIGKTHIKNLRLRE  126 (127)
T ss_dssp             HHHTSHHHHHHHHHHH
T ss_pred             HHHCCHHHHHHHHHhc
Confidence            9999999999998874

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=99.58  E-value=2e-15  Score=122.27  Aligned_cols=83  Identities=22%  Similarity=0.336  Sum_probs=65.5

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCcc-------c--ccc-ccccCCcccccccccCccCCHHHHHHH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSL-------V--KMS-LVKVGEKQTWCRLCNIGFSSEELFRLH  189 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~-------~--~p~-~~~~~~~~~~C~lCnv~~~S~~~l~sH  189 (259)
                      +||.+|+|+|+|+.++..||.|++|+++++.+.......       .  .+. ........+||.+|+++|+|+.++.+|
T Consensus        33 ~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~~~~H  112 (127)
T 1zu1_A           33 TQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSKCCPVCNMTFSSPVVAESH  112 (127)
T ss_dssp             SEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCSSCCSSCCCTTTEETTTTEECSSHHHHHHH
T ss_pred             CcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCccccccCCCCCeEcCCCCCEeCCHHHHHHH
Confidence            569999999999999999999999999998776432100       0  010 011234578999999999999999999


Q ss_pred             hchhhHHHHHHHh
Q 047603          190 LNAKKHKALQRAK  202 (259)
Q Consensus       190 l~GkKH~~~~k~~  202 (259)
                      +.|++|+.+++.+
T Consensus       113 ~~gk~H~~~~~~~  125 (127)
T 1zu1_A          113 YIGKTHIKNLRLR  125 (127)
T ss_dssp             HTSHHHHHHHHHH
T ss_pred             HCCHHHHHHHHHh
Confidence            9999999987754

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.23  E-value=3.9e-06  Score=61.43  Aligned_cols=77  Identities=22%  Similarity=0.455  Sum_probs=61.6

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ  199 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~  199 (259)
                      +.|.+|+..|.+...|..|+.  .|.                     ....+.|.+|+..|.+...|..|+.-  |    
T Consensus         9 ~~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~~--h----   59 (96)
T 2dmd_A            9 HKCEVCGKCFSRKDKLKTHMR--CHT---------------------GVKPYKCKTCDYAAADSSSLNKHLRI--H----   59 (96)
T ss_dssp             CCBTTTTBCCCCHHHHHHHGG--GCC---------------------CCCSEECSSSCCEESSHHHHHHHHHH--S----
T ss_pred             eECCCCCCccCCHHHHHHHHH--hcC---------------------CCCCEeCCCCCCccCCHHHHHHHHHH--h----
Confidence            349999999999999999975  231                     12357799999999999999988751  2    


Q ss_pred             HHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          200 RAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       200 k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                             .....|.|.+|+..|.+...|..|++
T Consensus        60 -------~~~~~~~C~~C~~~f~~~~~l~~H~~   85 (96)
T 2dmd_A           60 -------SDERPFKCQICPYASRNSSQLTVHLR   85 (96)
T ss_dssp             -------CCCCCEECSSSSCEESSHHHHHHHHT
T ss_pred             -------CCCCCccCCCCCCccCCHHHHHHHHH
Confidence                   12235779999999999999999986

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.20  E-value=8.1e-06  Score=60.92  Aligned_cols=77  Identities=19%  Similarity=0.409  Sum_probs=61.2

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ  199 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~  199 (259)
                      +.|.+|+..|.+...|..|+.  .|.                     +...+.|.+|+..|.+...|..|+.-  |    
T Consensus        18 ~~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~~--h----   68 (106)
T 2ee8_A           18 FICKFCGRHFTKSYNLLIHER--THT---------------------DERPYTCDICHKAFRRQDHLRDHRYI--H----   68 (106)
T ss_dssp             CBCSSSCCBCSSHHHHHHHHH--HHC---------------------CSCCCBCSSSCCBCSCHHHHHHHGGG--S----
T ss_pred             eECCCCCCccCCHHHHHHHHH--HcC---------------------CCCCcCCCCccchhCCHHHHHHHHHH--h----
Confidence            339999999999999999963  221                     12357799999999999999999752  2    


Q ss_pred             HHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          200 RAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       200 k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                             .....|.|.+|+..|.+...|..|++
T Consensus        69 -------~~~~~~~C~~C~~~f~~~~~L~~H~~   94 (106)
T 2ee8_A           69 -------SKEKPFKCQECGKGFCQSRTLAVHKT   94 (106)
T ss_dssp             -------CCCCTTSCSSSCCCCSSHHHHHHHHH
T ss_pred             -------CCCCCeECCCcCCcccCHHHHHHHHH
Confidence                   12235779999999999999999984

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.05  E-value=5.9e-06  Score=60.36  Aligned_cols=77  Identities=26%  Similarity=0.587  Sum_probs=61.0

Q ss_pred             CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHHH
Q 047603          121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQR  200 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k  200 (259)
                      .|.+|+..|.+...|..|+.  .|.                     ....+.|.+|+..|.+...|..|+.  .|.    
T Consensus         9 ~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~--~h~----   59 (95)
T 2yt9_A            9 ACEICGKIFRDVYHLNRHKL--SHS---------------------GEKPYSCPVCGLRFKRKDRMSYHVR--SHD----   59 (95)
T ss_dssp             ECSSSCCEESSSHHHHHHHH--HSC---------------------SSCSEECSSSCCEESCHHHHHHHHH--HHC----
T ss_pred             ECCCCCCccCChHHHHHHHH--hcC---------------------CCCCCcCCCCCCccCCHHHHHHHHH--Hhc----
Confidence            39999999999999999964  231                     1235779999999999999998874  221    


Q ss_pred             HhhhccCC-CCcccCCccccccCCHHHHHHhhc
Q 047603          201 AKCTLKGG-GEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       201 ~~e~l~g~-~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                            +. ...|.|.+|+..|.+...|..|++
T Consensus        60 ------~~~~~~~~C~~C~~~f~~~~~L~~H~~   86 (95)
T 2yt9_A           60 ------GSVGKPYICQSCGKGFSRPDHLNGHIK   86 (95)
T ss_dssp             ------CCCCSSBCCSSSCCCBSSHHHHHHHHH
T ss_pred             ------CCCCCceECCCccchhCCHHHHHHHHH
Confidence                  11 135779999999999999999984

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.01  E-value=7e-06  Score=58.06  Aligned_cols=75  Identities=20%  Similarity=0.417  Sum_probs=60.6

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHHHH
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRA  201 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~  201 (259)
                      |.+|+..|.+...|..|+.  .|.                     +...+.|.+|+..|.+...|..|+.  .|.     
T Consensus         4 C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~--~h~-----   53 (82)
T 2kmk_A            4 CKICGKSFKRSSTLSTHLL--IHS---------------------DTRPYPCQYCGKRFHQKSDMKKHTF--IHT-----   53 (82)
T ss_dssp             CSSSCCEESSHHHHHHHHH--HHH---------------------TCCCEECSSSCCEESSHHHHHHHHH--HHH-----
T ss_pred             CCCCcccccCchhHHHHHH--HcC---------------------CCCCeeCCcCChhhCCHHHHHHHHH--Hhc-----
Confidence            9999999999999999974  232                     1235779999999999999998875  232     


Q ss_pred             hhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          202 KCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       202 ~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                            ....|.|.+|+..|.+...|..|++
T Consensus        54 ------~~~~~~C~~C~~~f~~~~~l~~H~~   78 (82)
T 2kmk_A           54 ------GEKPHKCQVCGKAFSQSSNLITHSR   78 (82)
T ss_dssp             ------TCCCEECTTTSCEESSHHHHHHHHH
T ss_pred             ------CCCCCcCCCcchhhCChHHHHHHHH
Confidence                  1224779999999999999999985

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=97.95  E-value=8.8e-06  Score=65.16  Aligned_cols=77  Identities=22%  Similarity=0.369  Sum_probs=62.2

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHH
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKAL  198 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~  198 (259)
                      .| |.+|+.+|.+...|..|..  .|.                     +..++.|++|+..|.+...|..|+.  .|.. 
T Consensus        22 ~y~C~~C~k~F~~~~~L~~H~~--~H~---------------------~~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-   75 (133)
T 2lt7_A           22 YYICIVCKRSYVCLTSLRRHFN--IHS---------------------WEKKYPCRYCEKVFPLAEYRTKHEI--HHTG-   75 (133)
T ss_dssp             EEEETTTCCEESCHHHHHHHHH--HHH---------------------CCSCEECSSSSCEESSHHHHHHHHH--HHHT-
T ss_pred             CeECCCCCCCcCCHHHHHHHHH--HcC---------------------CCCCeeCCccCeecccccchhhhcc--ccCC-
Confidence            46 9999999999999999974  452                     1235779999999999999998874  3431 


Q ss_pred             HHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          199 QRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       199 ~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                                ...|.|++|+..|.+...|..|++
T Consensus        76 ----------~k~~~C~~C~k~F~~~~~L~~H~~   99 (133)
T 2lt7_A           76 ----------ERRYQCLACGKSFINYQFMSSHIK   99 (133)
T ss_dssp             ----------CCCEEESSSCCEESSHHHHHHHHH
T ss_pred             ----------CccccCCCCCCCcCCHHHHHHHhH
Confidence                      124779999999999999999984

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.93  E-value=1.4e-05  Score=60.12  Aligned_cols=76  Identities=21%  Similarity=0.442  Sum_probs=60.6

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHH
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKAL  198 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~  198 (259)
                      .| | .|+..|.+...|..|+.  .|.                     ....+.|.+|+..|.+...|..|+.-  |.  
T Consensus        10 ~~~C-~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~~--h~--   61 (110)
T 2csh_A           10 LYPC-QCGKSFTHKSQRDRHMS--MHL---------------------GLRPYGCGVCGKKFKMKHHLVGHMKI--HT--   61 (110)
T ss_dssp             CEEC-TTSCEESSHHHHHHHHH--HHS---------------------CCCSEECTTTSCEESSSHHHHHHHTT--TC--
T ss_pred             CEec-cCCCccCCHHHHHHHHH--HcC---------------------CCcCccCCCCCcccCCHHHHHHHHHH--cC--
Confidence            45 9 99999999999999974  221                     12357799999999999999988752  21  


Q ss_pred             HHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          199 QRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       199 ~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                               ....|.|.+|+..|.+...|..|++
T Consensus        62 ---------~~~~~~C~~C~~~f~~~~~l~~H~~   86 (110)
T 2csh_A           62 ---------GIKPYECNICAKRFMWRDSFHRHVT   86 (110)
T ss_dssp             ---------CCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             ---------CCCCeeCCCCcchhcCHHHHHHHHH
Confidence                     2235779999999999999999985

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.92  E-value=2.5e-05  Score=58.64  Aligned_cols=73  Identities=21%  Similarity=0.286  Sum_probs=60.3

Q ss_pred             CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHHH
Q 047603          121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQR  200 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k  200 (259)
                      -|.+|+..|.+...|..|+.  .|.                       ..+.|.+|+..|.+...|..|+  . |..   
T Consensus        18 ~C~~C~~~f~~~~~l~~H~~--~H~-----------------------~~~~C~~C~~~f~~~~~l~~H~--~-H~~---   66 (107)
T 1wjp_A           18 QCRLCNAKLSSLLEQGSHER--LCR-----------------------NAAVCPYCSLRFFSPELKQEHE--S-KCE---   66 (107)
T ss_dssp             BCTTTCCBCSSHHHHHHHHH--HHH-----------------------HSBCCTTTCCCBSSHHHHHHHH--H-HCS---
T ss_pred             ECCCCCCccCCHHHHHHHHH--HCC-----------------------CCccCCCCCCccCCHHHHHHHH--H-cCC---
Confidence            39999999999999999975  341                       1467999999999999999987  2 531   


Q ss_pred             HhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          201 AKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       201 ~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                              ...|.|.+|+..|.+...|..|++
T Consensus        67 --------~~~~~C~~C~~~f~~~~~L~~H~~   90 (107)
T 1wjp_A           67 --------YKKLTCLECMRTFKSSFSIWRHQV   90 (107)
T ss_dssp             --------TGGGEEGGGTEECSSHHHHHHHHH
T ss_pred             --------CCCccCccccchhCCHHHHHHHHH
Confidence                    124679999999999999999985

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=97.89  E-value=2.5e-05  Score=56.22  Aligned_cols=75  Identities=27%  Similarity=0.546  Sum_probs=60.5

Q ss_pred             CC--CCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHH
Q 047603          122 CS--ICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQ  199 (259)
Q Consensus       122 C~--lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~  199 (259)
                      |.  .|+..|.+...|..|+.  .|.                     +...+.|.+|+..|.+...|..|+.  .|.   
T Consensus         7 C~~~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~--~h~---   58 (90)
T 1a1h_A            7 CPVESCDRRFSQSGSLTRHIR--IHT---------------------GQKPFQCRICMRNFSRSDHLTTHIR--THT---   58 (90)
T ss_dssp             CCSSSCCCEESSHHHHHHHHH--HHH---------------------CCCCEECTTTCCEESCHHHHHHHHH--HHH---
T ss_pred             CCCCCCCCccCCHHHHHHHHH--HhC---------------------CCCCccCCCCCcccCCHHHHHHHHH--HcC---
Confidence            98  59999999999999974  232                     1235779999999999999999875  332   


Q ss_pred             HHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          200 RAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       200 k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                              ....|.|.+|+..|.+...|..|++
T Consensus        59 --------~~~~~~C~~C~~~f~~~~~l~~H~~   83 (90)
T 1a1h_A           59 --------GEKPFACDICGRKFARSDERKRHTK   83 (90)
T ss_dssp             --------CCCCEECTTTCCEESSHHHHHHHHG
T ss_pred             --------CCCCccCCCCCchhCCHHHHHHHHH
Confidence                    1225779999999999999999986

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.84  E-value=1.9e-05  Score=60.04  Aligned_cols=51  Identities=22%  Similarity=0.397  Sum_probs=37.6

Q ss_pred             cccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ..+.|.+|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|++
T Consensus        65 ~~~~C~~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~  115 (124)
T 2dlq_A           65 QVFTCSVCQETFRRRMELRLHMV--SHT-----------GEMPYKCSSCSQQFMQKKDLQSHMI  115 (124)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH--HHS-----------SSCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCeECCCCCCccCCHHHHHHHHH--HcC-----------CCCCccCCCccchhCCHHHHHHHHH
Confidence            35668888888888888877763  221           1224679999999999999998874

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.80  E-value=8.5e-06  Score=65.58  Aligned_cols=48  Identities=27%  Similarity=0.513  Sum_probs=40.9

Q ss_pred             CcccCCccccccCCHHHHHHhhcchHHHHHHHHHH-------HHHhhccCCCCCC
Q 047603          210 EQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE-------KNRRAENLGSYSG  257 (259)
Q Consensus       210 ~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~-------~~~~~~~~g~~~~  257 (259)
                      ..|||..|+..|.+...|..|+++++|+++++.+.       +...+-|+|.|-+
T Consensus        49 kpfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~~p~Tq~eAe~aag~g~~~~  103 (124)
T 1zr9_A           49 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSYVP  103 (124)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSCSSCTTTSSCSCCCCCCC-
T ss_pred             cceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhccCCCcHHHHHHhccCCCCCC
Confidence            37999999999999999999999999999999974       3356778887754

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=97.75  E-value=9.1e-05  Score=56.15  Aligned_cols=79  Identities=22%  Similarity=0.371  Sum_probs=61.0

Q ss_pred             CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHHH
Q 047603          121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQR  200 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k  200 (259)
                      -|.+|+..|.+...|..|+.  .|.                     +...+.|.+|+..|.+...|..|+.-.-      
T Consensus         9 ~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~~~~------   59 (124)
T 2dlq_A            9 ECPTCHKKFLSKYYLKVHNR--KHT---------------------GEKPFECPKCGKCYFRKENLLEHEARNC------   59 (124)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH--HHS---------------------SCCSCBCTTTCCBCSSHHHHHHHHHHCC------
T ss_pred             CCCCCCCcCCCHHHHHHHHH--hCC---------------------CCCCeECCCCCchhcCHHHHHHHHhhhh------
Confidence            39999999999999999964  221                     1235779999999999999998864100      


Q ss_pred             HhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          201 AKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       201 ~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                          .......|.|.+|+..|.+...|..|++
T Consensus        60 ----~~~~~~~~~C~~C~~~f~~~~~l~~H~~   87 (124)
T 2dlq_A           60 ----MNRSEQVFTCSVCQETFRRRMELRLHMV   87 (124)
T ss_dssp             ----CCSCCCCEECSSSCCEESSHHHHHHHHH
T ss_pred             ----cCCCCCCeECCCCCCccCCHHHHHHHHH
Confidence                0112335779999999999999999984

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=97.72  E-value=0.0001  Score=52.84  Aligned_cols=77  Identities=26%  Similarity=0.551  Sum_probs=60.9

Q ss_pred             CCCCC--CcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccc--cccCccCCHHHHHHHhchhhH
Q 047603          120 NFCSI--CHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCR--LCNIGFSSEELFRLHLNAKKH  195 (259)
Q Consensus       120 ~~C~l--C~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~--lCnv~~~S~~~l~sHl~GkKH  195 (259)
                      +.|.+  |+..|.+...|..|..  .|.                     +...+.|.  .|+..|.+...|..|+.  .|
T Consensus         6 ~~C~~~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~--~h   60 (89)
T 2wbs_A            6 HTCDYAGCGKTYTKSSHLKAHLR--THT---------------------GEKPYHCDWDGCGWKFARSDELTRHYR--KH   60 (89)
T ss_dssp             EECCSTTTCCEESSHHHHHHHHT--TSC---------------------SSCCEECCSTTTCCEESSHHHHHHHHH--HH
T ss_pred             eeCCCCCCCCcCCCHHHHHHHHH--hcC---------------------CCCCcCCCCCCCCCccCCHHHHHHHHH--Hc
Confidence            33999  9999999999999975  231                     12356797  69999999999998874  34


Q ss_pred             HHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          196 KALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       196 ~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .           +...|.|.+|+..|.+...|..|++
T Consensus        61 ~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   86 (89)
T 2wbs_A           61 T-----------GHRPFQCQKCDRAFSRSDHLALHMK   86 (89)
T ss_dssp             H-----------CCCCEECSSSSCEESSHHHHHHHGG
T ss_pred             C-----------CCCCccCCCCCcccCCHHHHHHHHH
Confidence            3           1224679999999999999999985

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=97.65  E-value=1.5e-05  Score=57.85  Aligned_cols=75  Identities=17%  Similarity=0.312  Sum_probs=60.3

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHHHHH
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRA  201 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~  201 (259)
                      |.+|+..|.+...|..|..  .|.                     +...+.|.+|+..|.+...|..|+.-  |-.  . 
T Consensus         6 C~~C~k~f~~~~~L~~H~~--~H~---------------------~~~~~~C~~C~k~f~~~~~L~~H~~~--h~~--~-   57 (88)
T 1llm_C            6 CRICMRNFSRSDHLTTHIR--THT---------------------GEKPFACDICGRKFARSDERKRHRDI--QHI--L-   57 (88)
T ss_dssp             CTTTCCEESCHHHHHHHHH--HHH---------------------CCCCEECTTTCCEESSHHHHHHHHHH--HTH--H-
T ss_pred             CCCCCCccCCHHHHHHHHH--HcC---------------------CCCCccCCCCCCccCCHHHHHHHHHH--hCC--C-
Confidence            9999999999999999964  342                     12357799999999999999998753  221  1 


Q ss_pred             hhhccCCCCcccCCccccccCCHHHHHHhhcc
Q 047603          202 KCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       202 ~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~G  233 (259)
                               .+.|..|+..|.+...|..|++.
T Consensus        58 ---------~~~c~~C~~~f~~~~~L~~H~~~   80 (88)
T 1llm_C           58 ---------PILEDKVEELLSKNYHLENEVAR   80 (88)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------cchHHHHHHHHHHHhhhHHHHHH
Confidence                     36699999999999999999864

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=97.65  E-value=0.00011  Score=53.83  Aligned_cols=77  Identities=25%  Similarity=0.584  Sum_probs=60.1

Q ss_pred             CCCCC--CcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccc--cccCccCCHHHHHHHhchhhH
Q 047603          120 NFCSI--CHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCR--LCNIGFSSEELFRLHLNAKKH  195 (259)
Q Consensus       120 ~~C~l--C~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~--lCnv~~~S~~~l~sHl~GkKH  195 (259)
                      +.|.+  |+..|.+...|..|+.  .|.                     ....+.|.  .|+..|.+...|..|+.  .|
T Consensus        16 ~~C~~~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~--~h   70 (100)
T 2ebt_A           16 HYCDYPGCTKVYTKSSHLKAHLR--THT---------------------GEKPYKCTWEGCDWRFARSDELTRHYR--KH   70 (100)
T ss_dssp             EECCSSSCCCEESCHHHHHHHHH--HHS---------------------CCCCEECCSSSCCCEESSHHHHHHHHH--HH
T ss_pred             eEcCCCCCCCcccCHHHHHHHHH--HhC---------------------CCCCeeCCCCCCCCccCCHHHHHHHHH--Hh
Confidence            33997  9999999999999974  231                     12356795  69999999999998874  23


Q ss_pred             HHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          196 KALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       196 ~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .           ....|.|.+|+..|.+...|..|++
T Consensus        71 ~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   96 (100)
T 2ebt_A           71 T-----------GAKPFQCGVCNRSFSRSDHLALHMK   96 (100)
T ss_dssp             T-----------SCCSCBCSSSCCBCSSHHHHHHHHH
T ss_pred             C-----------CCCCeECCCCcCccCCHHHHHHHHH
Confidence            2           1235779999999999999999984

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.57  E-value=0.00017  Score=54.27  Aligned_cols=20  Identities=15%  Similarity=0.399  Sum_probs=17.6

Q ss_pred             CCCC--CcccCCCHHHHHHHhc
Q 047603          121 FCSI--CHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~l--C~V~~tSe~~l~~Hl~  140 (259)
                      -|.+  |+..|.+...|..|..
T Consensus         8 ~C~~~~C~~~f~~~~~l~~H~~   29 (119)
T 2jp9_A            8 MCAYPGCNKRYFKLSHLQMHSR   29 (119)
T ss_dssp             CCCSTTSCCCBSCHHHHHHHHH
T ss_pred             eCCCCCCcchhCCHHHHHHHHH
Confidence            3998  9999999999999975

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.54  E-value=0.00011  Score=60.54  Aligned_cols=88  Identities=25%  Similarity=0.449  Sum_probs=56.8

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCcc---------ccccc------cccCCcccccccccCccCCHHHH
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSL---------VKMSL------VKVGEKQTWCRLCNIGFSSEELF  186 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~---------~~p~~------~~~~~~~~~C~lCnv~~~S~~~l  186 (259)
                      |.+|+..|.+...|..|+.  .|.        +..+.         .....      .-.+...+.|.+|+..|.+...|
T Consensus        80 C~~C~~~f~~~~~l~~H~~--~h~--------~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L  149 (190)
T 2i13_A           80 CPECGKSFSQRANLRAHQR--THT--------GEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL  149 (190)
T ss_dssp             CTTTCCEESCHHHHHHHHH--HHH--------TCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHH
T ss_pred             CcccCCccCCHHHHHHHHH--hcC--------CCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccCCHHHH
Confidence            9999999999888888864  221        00000         00000      00123356688888888888888


Q ss_pred             HHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          187 RLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       187 ~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ..|+.  .|.           +...|.|.+|+..|.+...|..|++
T Consensus       150 ~~H~~--~H~-----------~~~~~~C~~C~~~f~~~~~L~~H~~  182 (190)
T 2i13_A          150 HTHQR--THT-----------GEKPYKCPECGKSFSRRDALNVHQR  182 (190)
T ss_dssp             HHHHH--HHH-----------CCCCEECTTTCCEESSHHHHHHHHT
T ss_pred             HHHHH--hcC-----------CCCCeECCCCCCccCCHHHHHHHHH
Confidence            77764  232           1235679999999999999999986

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.50  E-value=6.4e-05  Score=55.64  Aligned_cols=33  Identities=21%  Similarity=0.505  Sum_probs=29.4

Q ss_pred             cccCCcccccc--CCHHHHHHhhcchHHHHHHHHH
Q 047603          211 QKWCKLCDVWC--PNGDAFKMHLDGKNHILRLYEI  243 (259)
Q Consensus       211 ~~~C~lCnV~~--~Se~~m~~HL~GkKH~~~lk~~  243 (259)
                      .|||+.|++.+  .|.....+|++|+||+.+++..
T Consensus         3 kYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~y   37 (77)
T 3cw1_L            3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (77)
T ss_pred             CcccccCCceecCCCHHHHHHHHccHHHHHHHHHH
Confidence            68999999999  5577789999999999998875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=97.45  E-value=0.00019  Score=50.66  Aligned_cols=72  Identities=21%  Similarity=0.327  Sum_probs=59.0

Q ss_pred             C--CCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCccccccc--ccCccCCHHHHHHHhchhhHHH
Q 047603          122 C--SICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRL--CNIGFSSEELFRLHLNAKKHKA  197 (259)
Q Consensus       122 C--~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~  197 (259)
                      |  .+|+..|.+...|..|..  .|.                     +...+.|.+  |+..|.+...|..|++  .|. 
T Consensus         4 C~~~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~~~C~~~f~~~~~l~~H~~--~h~-   57 (85)
T 2j7j_A            4 CHFENCGKAFKKHNQLKVHQF--SHT---------------------QQLPYECPHEGCDKRFSLPSRLKRHEK--VHA-   57 (85)
T ss_dssp             CCSTTCCCEESSHHHHHHHHH--HHH---------------------TTCCEECCSTTCCCEESSHHHHHHHHH--HHH-
T ss_pred             CCCCCCCcccCCHHHHHHHHH--HhC---------------------CCCCeeCCCCCCcCccCCHHHHHHHHH--HhC-
Confidence            9  999999999999999963  342                     123577988  9999999999998874  333 


Q ss_pred             HHHHhhhccCCCCcccCCc---cccccCCHHHHHHhhc
Q 047603          198 LQRAKCTLKGGGEQKWCKL---CDVWCPNGDAFKMHLD  232 (259)
Q Consensus       198 ~~k~~e~l~g~~~~~~C~l---CnV~~~Se~~m~~HL~  232 (259)
                               +    |.|.+   |+..|.+...|..|++
T Consensus        58 ---------~----~~C~~~~~C~~~f~~~~~l~~H~~   82 (85)
T 2j7j_A           58 ---------G----YPCKKDDSCSFVGKTWTLYLKHVA   82 (85)
T ss_dssp             ---------S----EECCSCSSCCCEESSHHHHHHHHH
T ss_pred             ---------C----CCCCCCCCCCCccCCHHHHHHHHH
Confidence                     1    66999   9999999999999975

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.45  E-value=0.00027  Score=56.01  Aligned_cols=19  Identities=16%  Similarity=0.251  Sum_probs=16.6

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.+...|..|+.
T Consensus        28 C~~C~~~f~~~~~L~~H~~   46 (155)
T 2rpc_A           28 KKSCDRTFSTMHELVTHVT   46 (155)
T ss_dssp             CCCCCCCBSSHHHHHHHHH
T ss_pred             cccCCcccCCHHHHHHHHH
Confidence            8899999988888888876

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.44  E-value=5.1e-05  Score=57.42  Aligned_cols=80  Identities=10%  Similarity=0.154  Sum_probs=57.3

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccc-cccccCcc--CCHHHHHHHhchhhH
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTW-CRLCNIGF--SSEELFRLHLNAKKH  195 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~-C~lCnv~~--~S~~~l~sHl~GkKH  195 (259)
                      .| |.+|+..|.+...|..|..-..|           .          ....++ |.+|+..|  .....|..|+.-  |
T Consensus        19 ~~~C~~C~k~f~~~~~L~~H~~~~~h-----------~----------~~~~~~~C~~C~~~f~f~~~~~l~~H~~~--H   75 (115)
T 2dmi_A           19 KFRCKDCSAAYDTLVELTVHMNETGH-----------Y----------RDDNHETDNNNPKRWSKPRKRSLLEMEGK--E   75 (115)
T ss_dssp             SEEBSSSSCEESSHHHHHHHHHHTCC-----------C----------BCSCCCCCCCCCSCCSSCCCCCCCCCCCS--C
T ss_pred             CEECCccCchhcCHHHHHHHHHHhCc-----------c----------ccCCCccCCCCCcccccccHHHHHHHhhc--c
Confidence            45 99999999999999999741001           0          112334 99999888  776666666541  1


Q ss_pred             HHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcc
Q 047603          196 KALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       196 ~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~G  233 (259)
                                 .....|.|++|+..|.+...|..|++-
T Consensus        76 -----------~~~~~~~C~~C~k~f~~~~~L~~H~~~  102 (115)
T 2dmi_A           76 -----------DAQKVLKCMYCGHSFESLQDLSVHMIK  102 (115)
T ss_dssp             -----------CCCSSCBCSSSCCBCSSHHHHHHHHHH
T ss_pred             -----------CCCcceECCCCCCccCCHHHHHHHHHH
Confidence                       122357799999999999999999853

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=97.43  E-value=0.00024  Score=53.46  Aligned_cols=77  Identities=23%  Similarity=0.490  Sum_probs=61.3

Q ss_pred             CC-CC--CCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHH
Q 047603          120 NF-CS--ICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHK  196 (259)
Q Consensus       120 ~~-C~--lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~  196 (259)
                      .| |.  +|+..|.+...|..|+.  .|.                     +...+.|.+|+..|.+...|..|+.  .|.
T Consensus        36 ~~~C~~~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~--~h~   90 (119)
T 2jp9_A           36 PYQCDFKDCERRFSRSDQLKRHQR--RHT---------------------GVKPFQCKTCQRKFSRSDHLKTHTR--THT   90 (119)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH--HHH---------------------CCCCEECTTTCCEESCHHHHHHHHH--HHH
T ss_pred             CccCCCCCCcCccCCHHHHHHHHH--HcC---------------------CCCCccCCccCchhCCHHHHHHHHH--Hhc
Confidence            45 99  79999999999999974  232                     1235779999999999999999975  332


Q ss_pred             HHHHHhhhccCCCCcccC--CccccccCCHHHHHHhhc
Q 047603          197 ALQRAKCTLKGGGEQKWC--KLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       197 ~~~k~~e~l~g~~~~~~C--~lCnV~~~Se~~m~~HL~  232 (259)
                                 +...|.|  .+|+..|.+...|..|++
T Consensus        91 -----------~~~~~~C~~~~C~~~f~~~~~L~~H~~  117 (119)
T 2jp9_A           91 -----------GEKPFSCRWPSCQKKFARSDELVRHHN  117 (119)
T ss_dssp             -----------TCCCEECCSTTCCCEESSHHHHHHHHH
T ss_pred             -----------CCCCeeCCCCCCccccCCHHHHHHHHh
Confidence                       1224779  899999999999999985

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=97.37  E-value=0.00024  Score=58.37  Aligned_cols=90  Identities=22%  Similarity=0.401  Sum_probs=56.6

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccc---------cccc------cccCCcccccccccCccCCH
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLV---------KMSL------VKVGEKQTWCRLCNIGFSSE  183 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~---------~p~~------~~~~~~~~~C~lCnv~~~S~  183 (259)
                      .| |.+|+..|.+...|..|+.  .|..        ..+..         ....      .-.+...+.|.+|+..|.+.
T Consensus        49 ~~~C~~C~~~f~~~~~l~~H~~--~h~~--------~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~  118 (190)
T 2i13_A           49 PYKCPECGKSFSDKKDLTRHQR--THTG--------EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQL  118 (190)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH--HHHC--------CCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSH
T ss_pred             CccCCCcCchhCCHHHHHHHHH--hcCC--------CCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCH
Confidence            45 9999999999999999974  2220        01000         0000      00112345577777777777


Q ss_pred             HHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          184 ELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       184 ~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ..|..|+.  .|.           +...|.|.+|+..|.+...|..|++
T Consensus       119 ~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~L~~H~~  154 (190)
T 2i13_A          119 AHLRAHQR--THT-----------GEKPYKCPECGKSFSREDNLHTHQR  154 (190)
T ss_dssp             HHHHHHHH--HHH-----------CCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             HHHHHHHH--HhC-----------CCCCeECCCCCcccCCHHHHHHHHH
Confidence            66666653  121           1235679999999999999999975

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.36  E-value=0.00074  Score=53.44  Aligned_cols=76  Identities=25%  Similarity=0.482  Sum_probs=61.3

Q ss_pred             C-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCccccccc--ccCccCCHHHHHHHhchhhHHH
Q 047603          121 F-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRL--CNIGFSSEELFRLHLNAKKHKA  197 (259)
Q Consensus       121 ~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~  197 (259)
                      | |.+|+..|.+...|..|+.  .|.                     +...+.|.+  |+..|.+...|..|++  .|. 
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~~~C~~~f~~~~~L~~H~~--~h~-  116 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIR--VHT---------------------GEKPFPCPFPGCGKIFARSENLKIHKR--THT-  116 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTH--HHH---------------------CCCSEECSCTTTCCEESCHHHHHHHHT--TTC-
T ss_pred             cCCCCcccccCCHHHHHHHHH--hcC---------------------CCCcccCCcCCCCCccCCHHHHHHHHH--hhC-
Confidence            5 9999999999999999974  232                     123577998  9999999999999875  221 


Q ss_pred             HHHHhhhccCCCCcccCCc--cccccCCHHHHHHhhc
Q 047603          198 LQRAKCTLKGGGEQKWCKL--CDVWCPNGDAFKMHLD  232 (259)
Q Consensus       198 ~~k~~e~l~g~~~~~~C~l--CnV~~~Se~~m~~HL~  232 (259)
                                ....|.|.+  |+..|.+...|..|++
T Consensus       117 ----------~~~~~~C~~~~C~k~f~~~~~L~~H~~  143 (155)
T 2rpc_A          117 ----------GEKPFKCEFEGCDRRFANSSDRKKHMH  143 (155)
T ss_dssp             ----------SSCSBCCSSTTCCCCBSSHHHHHHSST
T ss_pred             ----------CCCCccCCCCCCCCccCCHHHHHHHHH
Confidence                      223577998  9999999999999986

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.36  E-value=0.0003  Score=53.55  Aligned_cols=50  Identities=24%  Similarity=0.424  Sum_probs=32.4

Q ss_pred             cccccc--ccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCC--ccccccCCHHHHHHhhc
Q 047603          170 QTWCRL--CNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCK--LCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       170 ~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~--lCnV~~~Se~~m~~HL~  232 (259)
                      .+.|.+  |+..|.+...|..|+.  .|.           +...|.|.  .|+..|.+...|..|++
T Consensus        62 ~~~C~~~~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~~~C~~~f~~~~~L~~H~~  115 (124)
T 1ubd_C           62 PFQCTFEGCGKRFSLDFNLRTHVR--IHT-----------GDRPYVCPFDGCNKKFAQSTNLKSHIL  115 (124)
T ss_dssp             CEECCSTTCCCEESCHHHHHHHHH--HHH-----------CCCCCCCCSTTCCCCCSSTTTTHHHHH
T ss_pred             CeeCCCCCCcCccCCHHHHHHHHH--HhC-----------CCCceECCCCCCCCccCCHHHHHHHHH
Confidence            455765  7777777777777763  222           12246684  48888888888877764

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=97.33  E-value=0.00011  Score=54.46  Aligned_cols=35  Identities=26%  Similarity=0.477  Sum_probs=30.2

Q ss_pred             CCCCCCCCcccC--CCHHHHHHHhcCCchHHHHHHhH
Q 047603          118 DSNFCSICHVPC--SSAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       118 ~~~~C~lC~V~~--tSe~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      +++||+.|++.+  +|.....+|..|++|+.+++...
T Consensus         2 PkYyCdYCd~~lt~Ds~s~Rk~H~~G~kH~~nv~~yy   38 (77)
T 3cw1_L            2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (77)
T ss_pred             CCcccccCCceecCCCHHHHHHHHccHHHHHHHHHHH
Confidence            468899999999  56778899999999999998643

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=97.24  E-value=0.00041  Score=52.78  Aligned_cols=75  Identities=19%  Similarity=0.360  Sum_probs=60.6

Q ss_pred             CCC--CCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhchhhHHHH
Q 047603          121 FCS--ICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKAL  198 (259)
Q Consensus       121 ~C~--lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~  198 (259)
                      .|.  +|+..|.+...|..|+.  .|.                      ...+.|.+|+..|.+...|..|+.  .|.  
T Consensus         7 ~C~~~~C~~~f~~~~~l~~H~~--~h~----------------------~~~~~C~~C~~~f~~~~~l~~H~~--~h~--   58 (124)
T 1ubd_C            7 ACPHKGCTKMFRDNSAMRKHLH--THG----------------------PRVHVCAECGKAFVESSKLKRHQL--VHT--   58 (124)
T ss_dssp             ECCSTTCCCEESSHHHHHHHHG--GGS----------------------CCCEECTTTCCEESSHHHHHHHGG--GTS--
T ss_pred             cCCCCCCcCccCCHHHHHHHHH--HcC----------------------CCCeECCCCCchhCCHHHHHHHHH--HcC--
Confidence            398  99999999999999974  341                      125779999999999999999976  221  


Q ss_pred             HHHhhhccCCCCcccCCc--cccccCCHHHHHHhhc
Q 047603          199 QRAKCTLKGGGEQKWCKL--CDVWCPNGDAFKMHLD  232 (259)
Q Consensus       199 ~k~~e~l~g~~~~~~C~l--CnV~~~Se~~m~~HL~  232 (259)
                               ....|.|.+  |+..|.+...|..|++
T Consensus        59 ---------~~~~~~C~~~~C~~~f~~~~~l~~H~~   85 (124)
T 1ubd_C           59 ---------GEKPFQCTFEGCGKRFSLDFNLRTHVR   85 (124)
T ss_dssp             ---------CCCCEECCSTTCCCEESCHHHHHHHHH
T ss_pred             ---------CCCCeeCCCCCCcCccCCHHHHHHHHH
Confidence                     223577986  9999999999999986

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.05  E-value=0.00022  Score=57.35  Aligned_cols=35  Identities=23%  Similarity=0.481  Sum_probs=32.6

Q ss_pred             CCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603          119 SNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL  153 (259)
Q Consensus       119 ~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~  153 (259)
                      .+||.+|+..|.+...|+.|+.+|+|+++++.+..
T Consensus        50 pfyC~~C~K~F~~~~~L~~H~rsK~HKrrvk~l~~   84 (124)
T 1zr9_A           50 LHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   84 (124)
T ss_dssp             CSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             ceEcccCcchhCCHHHHHHHHhhhhhhHHHHHhcc
Confidence            37799999999999999999999999999998864

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.99  E-value=0.00076  Score=44.31  Aligned_cols=50  Identities=16%  Similarity=0.442  Sum_probs=40.6

Q ss_pred             cccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhcc
Q 047603          171 TWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~G  233 (259)
                      +.|.+|+..|.+...|..|+.-  |.           ....|.|.+|+..|.+...|..|++-
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~~--h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~~   51 (57)
T 1bbo_A            2 YICEECGIRXKKPSMLKKHIRT--HT-----------DVRPYHCTYCNFSFKTKGNLTKHMKS   51 (57)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH--TS-----------SCCCEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcCCCCcCcCCCHHHHHHHHHh--cC-----------CCCCccCCCCCchhcCHHHHHHHHHH
Confidence            5699999999999999988641  21           12357799999999999999999864

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.91  E-value=0.0012  Score=43.30  Aligned_cols=51  Identities=24%  Similarity=0.554  Sum_probs=40.6

Q ss_pred             cccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ..+.|.+|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|++
T Consensus         3 ~~~~C~~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C            3 SSRECSYCGKFFRSNYYLNIHLR--THT-----------GEKPYKCEFCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             --CBCTTTCCBCSCHHHHHHHHH--HHH-----------CCCCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCccCCCCcchhCChHHHHHHHH--HcC-----------CCCCcCCCCCcchhCCHHHHHHHHH
Confidence            35679999999999999998875  232           1224779999999999999999985

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.90  E-value=0.0025  Score=52.18  Aligned_cols=52  Identities=19%  Similarity=0.295  Sum_probs=34.2

Q ss_pred             ccccc--cccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccC--CccccccCCHHHHHHhhc
Q 047603          170 QTWCR--LCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWC--KLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       170 ~~~C~--lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C--~lCnV~~~Se~~m~~HL~  232 (259)
                      .+.|.  .|+..|.+...|..|+.. .|.          .....|.|  ++|+..|.+...|..|++
T Consensus        72 ~~~C~~~~C~~~f~~~~~l~~H~~~-~h~----------~~~~~~~C~~~~C~k~f~~~~~L~~H~~  127 (190)
T 1tf6_A           72 NFTCDSDGCDLRFTTKANMKKHFNR-FHN----------IKICVYVCHFENCGKAFKKHNQLKVHQF  127 (190)
T ss_dssp             CEECCSSSCCCEESCHHHHHHHHHT-TSS----------TTTSCCEECSSSSCEECSSHHHHHHHHG
T ss_pred             ceeCCCCCCCCccCCHHHHHHHHHH-hcC----------CCcceeeCCCCCCccccCCHHHHHHHHH
Confidence            45577  677777777777766521 010          11224668  888888888888888875

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.90  E-value=0.0011  Score=45.76  Aligned_cols=52  Identities=19%  Similarity=0.357  Sum_probs=42.2

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.+...|..|+.-  |.           ....|.|.+|+..|.....|..|++
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~~--H~-----------~~~~~~C~~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHERI--HC-----------TDRPFKCNYCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHGG--GC-----------CSCSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH--cC-----------CCCCEeCCCCCCccCCHHHHHHHHH
Confidence            3467799999999999999988752  32           1224779999999999999999974

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.89  E-value=0.00079  Score=53.05  Aligned_cols=76  Identities=29%  Similarity=0.555  Sum_probs=53.7

Q ss_pred             CCC--CcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCccccccc--ccCccCCHHHHHHHhchhhHHH
Q 047603          122 CSI--CHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRL--CNIGFSSEELFRLHLNAKKHKA  197 (259)
Q Consensus       122 C~l--C~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~  197 (259)
                      |.+  |+..|.+...|..|+.  .|.                     +...+.|.+  |+..|.+...|..|+.- .|  
T Consensus        70 C~~~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~~~C~~~f~~~~~L~~H~~~-~H--  123 (155)
T 2gli_A           70 CTFEGCRKSYSRLENLKTHLR--SHT---------------------GEKPYMCEHEGCSKAFSNASDRAKHQNR-TH--  123 (155)
T ss_dssp             CCSTTCCCCCSSHHHHHHHHH--HTT---------------------TCCCEECCSTTCCCEESSSSTTHHHHHH-TT--
T ss_pred             CCCCCCCCcccCHHHHHHHHH--HcC---------------------CCCCeeCCCCCCCCccCCHHHHHHHHHH-hc--
Confidence            775  8888888777777753  121                     123567888  99888888788777631 11  


Q ss_pred             HHHHhhhccCCCCcccCCc--cccccCCHHHHHHhhc
Q 047603          198 LQRAKCTLKGGGEQKWCKL--CDVWCPNGDAFKMHLD  232 (259)
Q Consensus       198 ~~k~~e~l~g~~~~~~C~l--CnV~~~Se~~m~~HL~  232 (259)
                               .....|.|.+  |+..|.+...|..|++
T Consensus       124 ---------~~~~~~~C~~~~C~~~f~~~~~L~~H~~  151 (155)
T 2gli_A          124 ---------SNEKPYVCKLPGCTKRYTDPSSLRKHVK  151 (155)
T ss_dssp             ---------CSCCCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             ---------CCCCCeeCCCCCCccccCCHHHHHHHHH
Confidence                     1223577999  9999999999999985

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.83  E-value=0.0016  Score=43.32  Aligned_cols=50  Identities=22%  Similarity=0.458  Sum_probs=40.9

Q ss_pred             ccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ++.|.+|+..|.+...|..|+.-  |.           ....|-|.+|+..|.+...|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~--h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            2 SFVCEVCTRAFARQEHLKRHYRS--HT-----------NEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHHT--TT-----------SSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             cCcCCCCccccCCHHHHHHHHHH--hC-----------CCCCccCCCCCCccCCHHHHHHHHH
Confidence            46799999999999999988752  32           1225679999999999999999974

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.82  E-value=0.001  Score=46.23  Aligned_cols=52  Identities=23%  Similarity=0.354  Sum_probs=42.3

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.....|..|++  .|.           ....|.|.+|+..|.+...|..|++
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQR--VHT-----------GEKPYKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH--GGG-----------CSCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCccCCCCCCccCCHHHHHHHHH--hcC-----------CCCCeECCCCCcccCCHHHHHHHHH
Confidence            456779999999999999998875  232           1225779999999999999999984

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.81  E-value=0.0016  Score=48.38  Aligned_cols=53  Identities=17%  Similarity=0.286  Sum_probs=43.2

Q ss_pred             CcccccccccCccC-CHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFS-SEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~-S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|...|. ....|..|++  .|....+          .|.|.+|+..|.+...|..|++
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~~--~h~~~~~----------~~~C~~C~k~F~~~~~L~~H~~   75 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHME--VCQKLQD----------ALKCQHCRKQFKSKAGLNYHTM   75 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHHH--HHHHHHH----------HHSCSSSCCCCSCHHHHHHHHH
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHHH--HHcCCCC----------CEECCCCCCccCCHHHHHHHHH
Confidence            34677999999999 9999999984  4544222          3779999999999999999974

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=96.79  E-value=0.0017  Score=45.06  Aligned_cols=51  Identities=18%  Similarity=0.417  Sum_probs=42.3

Q ss_pred             cccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .++.|++|+..|+....|..|++  .|.           +...|.|.+|+..|.....|..|++
T Consensus         3 Kpy~C~~C~k~F~~~~~L~~H~~--~Ht-----------~ekp~~C~~C~k~F~~~~~L~~H~~   53 (60)
T 4gzn_C            3 RPFFCNFCGKTYRDASGLSRHRR--AHL-----------GYRPRSCPECGKCFRDQSEVNRHLK   53 (60)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH--HHH-----------TCCCEECTTTCCEESSHHHHHHHGG
T ss_pred             CCccCCCCCCEeCCHHHHHHHHH--HhC-----------CCcCeECCCCCCCcCCHHHHHHHhC
Confidence            36779999999999999998875  343           1225779999999999999999985

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=96.77  E-value=0.0047  Score=50.51  Aligned_cols=47  Identities=21%  Similarity=0.311  Sum_probs=27.8

Q ss_pred             cccccc--ccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCc---cccccCCHHHHHHhhc
Q 047603          170 QTWCRL--CNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKL---CDVWCPNGDAFKMHLD  232 (259)
Q Consensus       170 ~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~l---CnV~~~Se~~m~~HL~  232 (259)
                      .+.|.+  |+..|.+...|..|++  .|.              .|.|.+   |+..|.+...|..|++
T Consensus       134 ~~~C~~~~C~k~F~~~~~L~~H~~--~H~--------------~~~C~~~~~C~~~f~~~~~l~~H~~  185 (190)
T 1tf6_A          134 PYECPHEGCDKRFSLPSRLKRHEK--VHA--------------GYPCKKDDSCSFVGKTWTLYLKHVA  185 (190)
T ss_dssp             SSBCCSSSCCCBCSSHHHHHHHHT--SSC--------------SCCCCSTTTCCCCCSCHHHHHHHHT
T ss_pred             CccCCCCCCCchhcCHHHHHHHHH--HhC--------------CCcCCCCCcCCCccccHHHHHHHHH
Confidence            455655  6666666666666653  121              144666   7777777777766664

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.69  E-value=0.0018  Score=45.06  Aligned_cols=52  Identities=21%  Similarity=0.412  Sum_probs=42.0

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.+...|..|++  .|.           ....|-|.+|+..|.+...|..|++
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~--~H~-----------~~~~~~C~~C~k~f~~~~~L~~H~~   66 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKT--VHT-----------GEKPYRCNICGAQFNRPANLKTHTR   66 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHH--HHC-----------CCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCCeECCCCCceeCCHHHHHHHHH--HcC-----------CCCCEECCCCCchhCCHHHHHHHHH
Confidence            446779999999999999998874  232           1224679999999999999999984

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.68  E-value=0.0028  Score=44.40  Aligned_cols=52  Identities=19%  Similarity=0.300  Sum_probs=42.5

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.....|..|+.-  |.           ....|-|.+|+..|.....|..|++
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~~--h~-----------~~~~~~C~~C~~~f~~~~~L~~H~~   67 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRRT--HT-----------GEKPYKCDECGKAFIQRSHLIGHHR   67 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHTT--TC-----------CSCSEECSSSCCEESSHHHHHHHGG
T ss_pred             CCCEECCCCCcccCCHHHHHHHHHH--cC-----------CCcCeeCCCCCCccCCHHHHHHHHH
Confidence            4567799999999999999988752  21           1235679999999999999999985

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.54  E-value=0.0015  Score=45.84  Aligned_cols=55  Identities=16%  Similarity=0.328  Sum_probs=42.7

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.....|..|++  .|....        ....|.|.+|+..|.+...|..|++
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~--~h~~~~--------~~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQR--KHAETV--------AALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH--HHHHHT--------TTCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHH--HhhccC--------CCcccCCCCCCchhCCHHHHHHHHH
Confidence            346779999999999999998874  343210        1125779999999999999999974

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.52  E-value=0.0021  Score=47.66  Aligned_cols=51  Identities=20%  Similarity=0.363  Sum_probs=41.2

Q ss_pred             cccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ..+.|.+|+..|.+...|..|++  .|-           ....|.|++|+..|.....|..|++
T Consensus        27 ~~h~C~~Cgk~F~~~~~L~~H~~--~H~-----------~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           27 ECHLCPVCGESFASKGAQERHLR--LLH-----------AAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             TTEECTTSCCEESSHHHHHHHHH--TTS-----------CSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CCEECCCCCCCcCcHHHHhhhhh--hcc-----------CCCccCCCCCCCEeCCHHHHHHhCc
Confidence            35669999999999999998875  221           1235779999999999999999974

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=96.45  E-value=0.0023  Score=43.26  Aligned_cols=54  Identities=20%  Similarity=0.343  Sum_probs=41.9

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ..++.|.+|+..|.+...|..|+.-. |.          .....|.|.+|+..|.+...|..|++
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~~~-H~----------~~~~~~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A            8 EHTYRCKVCSRVYTHISNFCRHYVTS-HK----------RNVKVYPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             TTEEECTTTCCEESSHHHHHHHHHHH-SS----------SSCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             CcceECCCCcchhCCHHHHHHHHHHH-cC----------CCCcCeECCCCCCccCCHHHHHHHHH
Confidence            34677999999999999998886420 10          12235779999999999999999975

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=96.43  E-value=0.0034  Score=41.07  Aligned_cols=48  Identities=19%  Similarity=0.549  Sum_probs=39.2

Q ss_pred             CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .|.+|+..|.+...|..|+.  .|.                     +...+.|.+|+..|.+...|..|++
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~   50 (57)
T 1bbo_A            3 ICEECGIRXKKPSMLKKHIR--THT---------------------DVRPYHCTYCNFSFKTKGNLTKHMK   50 (57)
T ss_dssp             BCTTTCCBCSSHHHHHHHHH--HTS---------------------SCCCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCCCCcCcCCCHHHHHHHHH--hcC---------------------CCCCccCCCCCchhcCHHHHHHHHH
Confidence            39999999999999999963  221                     1235779999999999999998875

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=96.41  E-value=0.0036  Score=40.89  Aligned_cols=48  Identities=33%  Similarity=0.616  Sum_probs=39.5

Q ss_pred             CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .|.+|+..|.+...|..|..  .|.                     +...+.|.+|+..|.....|..|+.
T Consensus         6 ~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~   53 (57)
T 3uk3_C            6 ECSYCGKFFRSNYYLNIHLR--THT---------------------GEKPYKCEFCEYAAAQKTSLRYHLE   53 (57)
T ss_dssp             BCTTTCCBCSCHHHHHHHHH--HHH---------------------CCCCEECSSSSCEESSHHHHHHHHH
T ss_pred             cCCCCcchhCChHHHHHHHH--HcC---------------------CCCCcCCCCCcchhCCHHHHHHHHH
Confidence            39999999999999999964  232                     1235779999999999999998875

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=96.41  E-value=0.0026  Score=44.05  Aligned_cols=47  Identities=23%  Similarity=0.483  Sum_probs=40.1

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      |.+|+.+|.....|..|..  .|.                     +..++.|.+|+..|+....|..|++
T Consensus         7 C~~C~k~F~~~~~L~~H~~--~Ht---------------------~ekp~~C~~C~k~F~~~~~L~~H~~   53 (60)
T 4gzn_C            7 CNFCGKTYRDASGLSRHRR--AHL---------------------GYRPRSCPECGKCFRDQSEVNRHLK   53 (60)
T ss_dssp             CTTTCCEESSHHHHHHHHH--HHH---------------------TCCCEECTTTCCEESSHHHHHHHGG
T ss_pred             CCCCCCEeCCHHHHHHHHH--HhC---------------------CCcCeECCCCCCCcCCHHHHHHHhC
Confidence            9999999999999999964  342                     2346789999999999999999975

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.41  E-value=0.0028  Score=43.54  Aligned_cols=49  Identities=22%  Similarity=0.429  Sum_probs=40.4

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|+.  .|.                     +...+.|.+|+..|.....|..|++
T Consensus         9 ~~~C~~C~k~f~~~~~L~~H~~--~H~---------------------~~~~~~C~~C~~~f~~~~~L~~H~~   58 (70)
T 1x5w_A            9 PEKCSECSYSCSSKAALRIHER--IHC---------------------TDRPFKCNYCSFDTKQPSNLSKHMK   58 (70)
T ss_dssp             SEECSSSSCEESSHHHHHHHHG--GGC---------------------CSCSEECSSSSCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH--HcC---------------------CCCCEeCCCCCCccCCHHHHHHHHH
Confidence            45 9999999999999999974  342                     1235779999999999999998874

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.38  E-value=0.0063  Score=42.35  Aligned_cols=65  Identities=22%  Similarity=0.375  Sum_probs=49.1

Q ss_pred             CCC--CcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCccccccc--ccCccCCHHHHHHHhchhhHHH
Q 047603          122 CSI--CHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRL--CNIGFSSEELFRLHLNAKKHKA  197 (259)
Q Consensus       122 C~l--C~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~  197 (259)
                      |..  |+..|.+...|..|+.- .|.                     +...+.|.+  |+..|.+...|..|++  .|..
T Consensus        10 C~~~~C~~~f~~~~~L~~H~~~-~H~---------------------~~~~~~C~~~~C~k~f~~~~~L~~H~~--~H~~   65 (79)
T 2dlk_A           10 CDFPGCGRIFSNRQYLNHHKKY-QHI---------------------HQKSFSCPEPACGKSFNFKKHLKEHMK--LHSD   65 (79)
T ss_dssp             CSSTTTCCEESSHHHHHHHHHH-GGG---------------------SCCCEECSCTTTCCEESSHHHHHHHHH--HHHT
T ss_pred             CCCCCCcCccCCHHHHHHHHHH-HhC---------------------CCCCeECCCCCCcCccCCHHHHHHHHH--HhCC
Confidence            776  99999999999999630 121                     123577998  9999999999998875  3431


Q ss_pred             HHHHhhhccCCCCcccCCcccccc
Q 047603          198 LQRAKCTLKGGGEQKWCKLCDVWC  221 (259)
Q Consensus       198 ~~k~~e~l~g~~~~~~C~lCnV~~  221 (259)
                                 ...|.|++|+..|
T Consensus        66 -----------~~~~~C~~C~k~F   78 (79)
T 2dlk_A           66 -----------TRDYICEFSGPSS   78 (79)
T ss_dssp             -----------SCCCSCCSSSCCC
T ss_pred             -----------CCCeeCCCCCCCC
Confidence                       1257799999876

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.36  E-value=0.0051  Score=44.38  Aligned_cols=52  Identities=25%  Similarity=0.532  Sum_probs=42.5

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|++
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   57 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMR--CHT-----------GVKPYKCKTCDYAAADSSSLNKHLR   57 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGG--GCC-----------CCCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHH--hcC-----------CCCCEeCCCCCCccCCHHHHHHHHH
Confidence            346779999999999999999976  221           2235779999999999999999985

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.29  E-value=0.0037  Score=43.72  Aligned_cols=54  Identities=24%  Similarity=0.493  Sum_probs=41.8

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.....|..|+.- .|.          +....|.|.+|+..|.+...|..|++
T Consensus        13 ~k~~~C~~C~k~f~~~~~L~~H~~~-~h~----------~~~~~~~C~~C~~~f~~~~~L~~H~~   66 (77)
T 2ct1_A           13 EKPYECYICHARFTQSGTMKMHILQ-KHT----------ENVAKFHCPHCDTVIARKSDLGVHLR   66 (77)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHHH-HSS----------SSCSSEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCeECCCcCchhCCHHHHHHHHHH-hcC----------CCCCccCCCCCCCccCCHHHHHHHHH
Confidence            3467799999999999999988641 111          11135779999999999999999975

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.27  E-value=0.01  Score=41.41  Aligned_cols=49  Identities=24%  Similarity=0.480  Sum_probs=40.6

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|+.  .|.                     +...+.|.+|+..|.....|..|++
T Consensus        18 ~~~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~L~~H~~   67 (77)
T 2cot_A           18 RYKCDECGKSFSHSSDLSKHRR--THT---------------------GEKPYKCDECGKAFIQRSHLIGHHR   67 (77)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHT--TTC---------------------CSCSEECSSSCCEESSHHHHHHHGG
T ss_pred             CEECCCCCcccCCHHHHHHHHH--HcC---------------------CCcCeeCCCCCCccCCHHHHHHHHH
Confidence            45 9999999999999999974  342                     1235779999999999999999975

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.27  E-value=0.0037  Score=49.10  Aligned_cols=50  Identities=26%  Similarity=0.488  Sum_probs=36.4

Q ss_pred             ccccccc--ccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCc--cccccCCHHHHHHhh
Q 047603          169 KQTWCRL--CNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKL--CDVWCPNGDAFKMHL  231 (259)
Q Consensus       169 ~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~l--CnV~~~Se~~m~~HL  231 (259)
                      ..+.|.+  |+..|.+...|..|+.-  |.           ....|.|.+  |+..|.+...|..|+
T Consensus        66 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h~-----------~~~~~~C~~~~C~~~f~~~~~L~~H~  119 (155)
T 2gli_A           66 KPHKCTFEGCRKSYSRLENLKTHLRS--HT-----------GEKPYMCEHEGCSKAFSNASDRAKHQ  119 (155)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH--TT-----------TCCCEECCSTTCCCEESSSSTTHHHH
T ss_pred             CCccCCCCCCCCcccCHHHHHHHHHH--cC-----------CCCCeeCCCCCCCCccCCHHHHHHHH
Confidence            3566875  88888888888877642  21           123466988  999999888888887

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.24  E-value=0.0063  Score=40.22  Aligned_cols=48  Identities=27%  Similarity=0.591  Sum_probs=39.7

Q ss_pred             CCCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      -|.+|+..|.+...|..|..  .|.                     +...+.|.+|+..|.+...|..|+.
T Consensus         4 ~C~~C~~~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~   51 (60)
T 2adr_A            4 VCEVCTRAFARQEHLKRHYR--SHT---------------------NEKPYPCGLCNRAFTRRDLLIRHAQ   51 (60)
T ss_dssp             CCTTTCCCBSCHHHHHHHHH--TTT---------------------SSCSEECTTTCCEESSHHHHHHHHT
T ss_pred             cCCCCccccCCHHHHHHHHH--HhC---------------------CCCCccCCCCCCccCCHHHHHHHHH
Confidence            39999999999999999975  242                     1235779999999999999999964

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=96.23  E-value=0.0044  Score=42.88  Aligned_cols=49  Identities=29%  Similarity=0.419  Sum_probs=40.3

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|+.  .|.                     ....+.|.+|+..|.....|..|++
T Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           14 PYGCVECGKAFSRSSILVQHQR--VHT---------------------GEKPYKCLECGKAFSQNSGLINHQR   63 (72)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH--GGG---------------------CSCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH--hcC---------------------CCCCeECCCCCcccCCHHHHHHHHH
Confidence            45 9999999999999999974  332                     1235779999999999999998875

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.18  E-value=0.0043  Score=43.06  Aligned_cols=49  Identities=24%  Similarity=0.529  Sum_probs=39.8

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|..  .|.                     +...+.|.+|+..|.+...|..|++
T Consensus        17 ~~~C~~C~k~f~~~~~l~~H~~--~H~---------------------~~~~~~C~~C~k~f~~~~~L~~H~~   66 (74)
T 2lce_A           17 PYKCDRCQASFRYKGNLASHKT--VHT---------------------GEKPYRCNICGAQFNRPANLKTHTR   66 (74)
T ss_dssp             SBCCTTSSCCBSCHHHHHHHHH--HHC---------------------CCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CeECCCCCceeCCHHHHHHHHH--HcC---------------------CCCCEECCCCCchhCCHHHHHHHHH
Confidence            45 9999999999999999963  231                     1235779999999999999998874

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.17  E-value=0.0063  Score=45.01  Aligned_cols=49  Identities=22%  Similarity=0.404  Sum_probs=40.6

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|++...|..|+.  .|-                     +..++.|.+|+..|.....|..|++
T Consensus        28 ~h~C~~Cgk~F~~~~~L~~H~~--~H~---------------------~~k~~~C~~C~k~F~~~~~L~~H~~   77 (85)
T 2lv2_A           28 CHLCPVCGESFASKGAQERHLR--LLH---------------------AAQVFPCKYCPATFYSSPGLTRHIN   77 (85)
T ss_dssp             TEECTTSCCEESSHHHHHHHHH--TTS---------------------CSSSEECTTSSCEESSHHHHHHHHH
T ss_pred             CEECCCCCCCcCcHHHHhhhhh--hcc---------------------CCCccCCCCCCCEeCCHHHHHHhCc
Confidence            45 9999999999999999974  332                     1236789999999999999999864

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=96.15  E-value=0.0075  Score=44.39  Aligned_cols=52  Identities=19%  Similarity=0.394  Sum_probs=42.2

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|++
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   66 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHER--THT-----------DERPYTCDICHKAFRRQDHLRDHRY   66 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHH--HHC-----------CSCCCBCSSSCCBCSCHHHHHHHGG
T ss_pred             CcCeECCCCCCccCCHHHHHHHHH--HcC-----------CCCCcCCCCccchhCCHHHHHHHHH
Confidence            346779999999999999998874  221           1235779999999999999999986

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.09  E-value=0.0041  Score=44.84  Aligned_cols=52  Identities=19%  Similarity=0.389  Sum_probs=41.8

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|++
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   56 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKL--SHS-----------GEKPYSCPVCGLRFKRKDRMSYHVR   56 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHH--HSC-----------SSCSEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHH--hcC-----------CCCCCcCCCCCCccCCHHHHHHHHH
Confidence            446779999999999999998864  221           1235779999999999999999984

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=96.06  E-value=0.011  Score=43.74  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=42.1

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhh
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHL  231 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL  231 (259)
                      ...+.|.+|+..|.+...|..|+.-  |.   +          .|.|.+|+..|.+...|..|+
T Consensus        14 ~~~~~C~~C~~~f~~~~~l~~H~~~--H~---~----------~~~C~~C~~~f~~~~~l~~H~   62 (107)
T 1wjp_A           14 KEVYQCRLCNAKLSSLLEQGSHERL--CR---N----------AAVCPYCSLRFFSPELKQEHE   62 (107)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHHH--HH---H----------SBCCTTTCCCBSSHHHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHHH--CC---C----------CccCCCCCCccCCHHHHHHHH
Confidence            4467799999999999999999863  52   1          477999999999999999998

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.05  E-value=0.0058  Score=45.20  Aligned_cols=50  Identities=18%  Similarity=0.383  Sum_probs=40.4

Q ss_pred             CC-CCCCcccCC-CHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCS-SAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~t-Se~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|. +...|..|+.  .|....                    ..+.|.+|...|.....|..|++
T Consensus        24 ~~~C~~C~k~f~~~~~~L~~H~~--~h~~~~--------------------~~~~C~~C~k~F~~~~~L~~H~~   75 (98)
T 2gqj_A           24 EAVCPTCNVVTRKTLVGLKKHME--VCQKLQ--------------------DALKCQHCRKQFKSKAGLNYHTM   75 (98)
T ss_dssp             CCCCTTTCCCCSSCSHHHHHHHH--HHHHHH--------------------HHHSCSSSCCCCSCHHHHHHHHH
T ss_pred             CcCCCCCCCChhhhHHHHHHHHH--HHcCCC--------------------CCEECCCCCCccCCHHHHHHHHH
Confidence            45 999999999 9999999973  454211                    25779999999999999998874

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.85  E-value=0.009  Score=42.03  Aligned_cols=56  Identities=20%  Similarity=0.325  Sum_probs=41.2

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.....|..|+.-  |..       .......|-|.+|+..|.+...|..|++
T Consensus        13 ~k~~~C~~C~~~f~~~~~l~~H~~~--~~~-------~~~~~~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A           13 EKPYACSHCDKTFRQKQLLDMHFKR--YHD-------PNFVPAAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH--TTC-------SSCCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH--hcC-------CcCCCcceECCCCCChhCCHHHHHHHHH
Confidence            3467799999999999999888641  100       0000124679999999999999999974

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.81  E-value=0.0088  Score=44.62  Aligned_cols=48  Identities=19%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             ccccccccCcc-CCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhh
Q 047603          170 QTWCRLCNIGF-SSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHL  231 (259)
Q Consensus       170 ~~~C~lCnv~~-~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL  231 (259)
                      .+.|..|+..| .+...|..|+.  .| .           ...|.|.+|+..|.+...|..|+
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~--~h-~-----------~k~~~C~~Cgk~F~~~~~L~~H~   82 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHME--NC-K-----------QEMFTCHHCGKQLRSLAGMKYHV   82 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHH--HH-C-----------CCCCCCSSSCCCCSSHHHHHHHH
T ss_pred             CcCCCCCCCCcccCHHHHHHHHH--HH-C-----------CCCeECCCCCCeeCCHHHHHHHh
Confidence            57799999999 99999988865  23 1           12577999999999999999993

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.81  E-value=0.0057  Score=42.76  Aligned_cols=52  Identities=23%  Similarity=0.531  Sum_probs=40.7

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|+.  .|....                  ....+.|.+|+..|.....|..|++
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~--~h~~~~------------------~~~~~~C~~C~k~f~~~~~L~~H~~   59 (78)
T 2d9h_A            7 GLQCEICGFTCRQKASLNWHQR--KHAETV------------------AALRFPCEFCGKRFEKPDSVAAHRS   59 (78)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH--HHHHHT------------------TTCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CeECCCCCCeeCCHHHHHHHHH--HhhccC------------------CCcccCCCCCCchhCCHHHHHHHHH
Confidence            45 9999999999999999963  343210                  1235779999999999999998864

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.78  E-value=0.0039  Score=59.20  Aligned_cols=38  Identities=18%  Similarity=0.310  Sum_probs=33.5

Q ss_pred             ccCCcccc------ccCCHHHHHHhhcchHHHHHHHHHHHHHhh
Q 047603          212 KWCKLCDV------WCPNGDAFKMHLDGKNHILRLYEIEKNRRA  249 (259)
Q Consensus       212 ~~C~lCnV------~~~Se~~m~~HL~GkKH~~~lk~~~~~~~~  249 (259)
                      +.|++|+.      .+..+.+.+.|++|++|++++++..++.+.
T Consensus       361 ~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~k~~~~  404 (409)
T 3eph_A          361 YTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNTRQADF  404 (409)
T ss_dssp             EEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred             eeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence            56999998      899999999999999999999988766543

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=95.72  E-value=0.01  Score=42.51  Aligned_cols=50  Identities=28%  Similarity=0.531  Sum_probs=41.4

Q ss_pred             ccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ++.|.+|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|+.
T Consensus         3 ~~~C~~C~k~f~~~~~L~~H~~--~H~-----------~~~~~~C~~C~k~f~~~~~L~~H~~   52 (88)
T 1llm_C            3 PFQCRICMRNFSRSDHLTTHIR--THT-----------GEKPFACDICGRKFARSDERKRHRD   52 (88)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH--HHH-----------CCCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHH--HcC-----------CCCCccCCCCCCccCCHHHHHHHHH
Confidence            5679999999999999998875  243           1224779999999999999999985

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=95.69  E-value=0.0083  Score=47.57  Aligned_cols=53  Identities=21%  Similarity=0.351  Sum_probs=43.4

Q ss_pred             CCcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          167 GEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       167 ~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      +...|.|.+|+..|.+...|..|++  .|..           ...|.|++|+..|.+...|..|++
T Consensus        19 Gek~y~C~~C~k~F~~~~~L~~H~~--~H~~-----------~k~~~C~~C~k~F~~~~~L~~H~~   71 (133)
T 2lt7_A           19 GRVYYICIVCKRSYVCLTSLRRHFN--IHSW-----------EKKYPCRYCEKVFPLAEYRTKHEI   71 (133)
T ss_dssp             TEEEEEETTTCCEESCHHHHHHHHH--HHHC-----------CSCEECSSSSCEESSHHHHHHHHH
T ss_pred             CCcCeECCCCCCCcCCHHHHHHHHH--HcCC-----------CCCeeCCccCeecccccchhhhcc
Confidence            3456779999999999999999975  4531           124779999999999999999984

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=95.60  E-value=0.018  Score=39.44  Aligned_cols=52  Identities=21%  Similarity=0.452  Sum_probs=41.6

Q ss_pred             Ccccccc--cccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCR--LCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~--lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.|.  .|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|++
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIR--IHT-----------GQKPFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHH--HHH-----------CCCCEECTTTCCEESCHHHHHHHHT
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHH--hhC-----------CCCCeECCCCCchhCCHHHHHHHHH
Confidence            3467797  59999999999998874  333           1224779999999999999999985

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=95.57  E-value=0.012  Score=40.88  Aligned_cols=49  Identities=20%  Similarity=0.354  Sum_probs=40.5

Q ss_pred             cccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          171 TWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       171 ~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      +.|.+|+..|.+...|..|+.  .|..           ...|.|.+|+..|.+...|..|++
T Consensus         2 ~~C~~C~~~f~~~~~l~~H~~--~h~~-----------~~~~~C~~C~~~f~~~~~l~~H~~   50 (82)
T 2kmk_A            2 FDCKICGKSFKRSSTLSTHLL--IHSD-----------TRPYPCQYCGKRFHQKSDMKKHTF   50 (82)
T ss_dssp             EECSSSCCEESSHHHHHHHHH--HHHT-----------CCCEECSSSCCEESSHHHHHHHHH
T ss_pred             ccCCCCcccccCchhHHHHHH--HcCC-----------CCCeeCCcCChhhCCHHHHHHHHH
Confidence            569999999999999998875  2321           225779999999999999999985

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=95.49  E-value=0.011  Score=39.81  Aligned_cols=51  Identities=22%  Similarity=0.481  Sum_probs=39.9

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|..- .|.                    .+...+.|.+|+..|.+...|..|++
T Consensus        10 ~~~C~~C~k~f~~~~~l~~H~~~-~H~--------------------~~~~~~~C~~C~k~f~~~~~L~~H~~   61 (66)
T 2drp_A           10 TYRCKVCSRVYTHISNFCRHYVT-SHK--------------------RNVKVYPCPFCFKEFTRKDNMTAHVK   61 (66)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHH-HSS--------------------SSCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             ceECCCCcchhCCHHHHHHHHHH-HcC--------------------CCCcCeECCCCCCccCCHHHHHHHHH
Confidence            35 99999999999999999631 010                    01235779999999999999998875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=95.32  E-value=0.021  Score=39.18  Aligned_cols=49  Identities=27%  Similarity=0.625  Sum_probs=39.6

Q ss_pred             CC-CC--CCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CS--ICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~--lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.  .|+..|.+...|..|..  .|.                     +...+.|.+|+..|.....|..|++
T Consensus        19 ~~~C~~~~C~k~f~~~~~l~~H~~--~h~---------------------~~~~~~C~~C~~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           19 PYACPVESCDRRFSRSDELTRHIR--IHT---------------------GQKPFQCRICMRNFSRSDHLTTHIR   70 (73)
T ss_dssp             CEECSSTTBCCEESSHHHHHHHHH--HHH---------------------CCCCEECTTTCCEESCHHHHHHHHT
T ss_pred             ccCCcCCCCCCccCCHHHHHHHHH--hhC---------------------CCCCeECCCCCchhCCHHHHHHHHH
Confidence            45 97  59999999999999974  332                     1235779999999999999999975

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.12  E-value=0.0046  Score=43.25  Aligned_cols=51  Identities=22%  Similarity=0.471  Sum_probs=39.5

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|+.- .|.                    .....+.|.+|+..|.....|..|++
T Consensus        15 ~~~C~~C~k~f~~~~~L~~H~~~-~h~--------------------~~~~~~~C~~C~~~f~~~~~L~~H~~   66 (77)
T 2ct1_A           15 PYECYICHARFTQSGTMKMHILQ-KHT--------------------ENVAKFHCPHCDTVIARKSDLGVHLR   66 (77)
T ss_dssp             SEECTTTCCEESCHHHHHHHHHH-HSS--------------------SSCSSEECSSSSCEESSHHHHHHHHH
T ss_pred             CeECCCcCchhCCHHHHHHHHHH-hcC--------------------CCCCccCCCCCCCccCCHHHHHHHHH
Confidence            45 99999999999999999630 111                    00135779999999999999998875

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.02  E-value=0.014  Score=43.23  Aligned_cols=51  Identities=20%  Similarity=0.315  Sum_probs=41.6

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ...+.| .|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|++
T Consensus         8 ~k~~~C-~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   58 (110)
T 2csh_A            8 DKLYPC-QCGKSFTHKSQRDRHMS--MHL-----------GLRPYGCGVCGKKFKMKHHLVGHMK   58 (110)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHH--HHS-----------CCCSEECTTTSCEESSSHHHHHHHT
T ss_pred             CCCEec-cCCCccCCHHHHHHHHH--HcC-----------CCcCccCCCCCcccCCHHHHHHHHH
Confidence            446779 99999999999998875  232           1225779999999999999999987

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.79  E-value=0.036  Score=39.74  Aligned_cols=52  Identities=19%  Similarity=0.206  Sum_probs=39.4

Q ss_pred             ccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCC-------cccCCccccccCCHHHHHHhhc
Q 047603          170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGE-------QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~-------~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .+-|.+|+..|.....|..|+.. .|.          +...       .|-|.+|+..|.+...|..|++
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~-~H~----------~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTM-EHV----------GGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR   83 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHH-TTT----------CCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHH-hcc----------CCCCCCccceeccCCCCCCcccCCHHHHHHHHH
Confidence            34599999999999999988652 021          1111       1669999999999999999985

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=94.61  E-value=0.035  Score=39.21  Aligned_cols=50  Identities=22%  Similarity=0.449  Sum_probs=40.7

Q ss_pred             ccccc--cccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          170 QTWCR--LCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       170 ~~~C~--lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .+.|.  .|+..|.+...|..|+.  .|.           ....|.|.+|+..|.+...|..|++
T Consensus         4 ~~~C~~~~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~C~~~f~~~~~l~~H~~   55 (90)
T 1a1h_A            4 PYACPVESCDRRFSQSGSLTRHIR--IHT-----------GQKPFQCRICMRNFSRSDHLTTHIR   55 (90)
T ss_dssp             CEECCSSSCCCEESSHHHHHHHHH--HHH-----------CCCCEECTTTCCEESCHHHHHHHHH
T ss_pred             ceECCCCCCCCccCCHHHHHHHHH--HhC-----------CCCCccCCCCCcccCCHHHHHHHHH
Confidence            56797  59999999999998875  232           1235779999999999999999985

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.57  E-value=0.019  Score=39.52  Aligned_cols=33  Identities=24%  Similarity=0.523  Sum_probs=30.0

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      .-|.+|+|.++....+++|+..+.|..+|+...
T Consensus        14 ~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~v   46 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDHIFSKQHISKVRETV   46 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHTT
T ss_pred             ccccccCcccccccchhhhhccHHHHHHHHHHH
Confidence            459999999999999999999999999998543

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=94.55  E-value=0.013  Score=40.32  Aligned_cols=33  Identities=27%  Similarity=0.428  Sum_probs=30.4

Q ss_pred             cccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI  243 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~  243 (259)
                      ..-|.+|+|.++....++.|+-.+.|..+|++.
T Consensus        13 ~~eC~lC~vkYs~r~slqDHIFs~qHI~~vk~~   45 (55)
T 2yrk_A           13 KPECTLCGVKYSARLSIRDHIFSKQHISKVRET   45 (55)
T ss_dssp             CSCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             CccccccCcccccccchhhhhccHHHHHHHHHH
Confidence            357999999999999999999999999999864

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=94.54  E-value=0.039  Score=38.33  Aligned_cols=49  Identities=20%  Similarity=0.335  Sum_probs=39.9

Q ss_pred             ccc--ccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCc--cccccCCHHHHHHhhc
Q 047603          171 TWC--RLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKL--CDVWCPNGDAFKMHLD  232 (259)
Q Consensus       171 ~~C--~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~l--CnV~~~Se~~m~~HL~  232 (259)
                      +.|  ..|+..|.+...|..|++  .|..           ...|-|.+  |+..|.+...|..|++
T Consensus         2 ~~C~~~~C~~~f~~~~~l~~H~~--~h~~-----------~~~~~C~~~~C~~~f~~~~~l~~H~~   54 (85)
T 2j7j_A            2 YVCHFENCGKAFKKHNQLKVHQF--SHTQ-----------QLPYECPHEGCDKRFSLPSRLKRHEK   54 (85)
T ss_dssp             EECCSTTCCCEESSHHHHHHHHH--HHHT-----------TCCEECCSTTCCCEESSHHHHHHHHH
T ss_pred             ccCCCCCCCcccCCHHHHHHHHH--HhCC-----------CCCeeCCCCCCcCccCCHHHHHHHHH
Confidence            458  899999999999998874  3431           12467998  9999999999999984

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=94.48  E-value=0.053  Score=37.03  Aligned_cols=52  Identities=17%  Similarity=0.401  Sum_probs=41.1

Q ss_pred             Cccccccc--ccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCc--cccccCCHHHHHHhhc
Q 047603          168 EKQTWCRL--CNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKL--CDVWCPNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~l--CnV~~~Se~~m~~HL~  232 (259)
                      ...+.|..  |...|.....|..|+.  .|.           ....|-|.+  |+..|.....|..|++
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~--~H~-----------~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTR--THT-----------GEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHH--HHS-----------SSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHH--hcC-----------CCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            34667998  9999999999998874  332           122467976  9999999999999985

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=94.32  E-value=0.022  Score=53.99  Aligned_cols=34  Identities=26%  Similarity=0.583  Sum_probs=30.7

Q ss_pred             CCcccCCccccccCCHHHHHHhhcchHHHHHHHH
Q 047603          209 GEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYE  242 (259)
Q Consensus       209 ~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~  242 (259)
                      ...+||..|+..|.++.+|..||.|+||.+.+.+
T Consensus       290 ~~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~  323 (402)
T 4dgw_A          290 AKGIYCPFCSRWFKTSSVFESHLVGKIHKKNESK  323 (402)
T ss_dssp             TTEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHH
T ss_pred             CcCeeehhhhhhhccccccHHHhcccccchhHHH
Confidence            4479999999999999999999999999987644

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.30  E-value=0.045  Score=40.63  Aligned_cols=46  Identities=15%  Similarity=0.380  Sum_probs=38.0

Q ss_pred             CC-CCCCcccC-CCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHH
Q 047603          120 NF-CSICHVPC-SSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLH  189 (259)
Q Consensus       120 ~~-C~lC~V~~-tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sH  189 (259)
                      .| |.+|+..| .+...|..|..  .| .                     ...+.|.+|+..|.....|..|
T Consensus        34 ~~~C~~C~k~F~~~~~~L~~H~~--~h-~---------------------~k~~~C~~Cgk~F~~~~~L~~H   81 (96)
T 2ctd_A           34 SVSCPTCQAVGRKTIEGLKKHME--NC-K---------------------QEMFTCHHCGKQLRSLAGMKYH   81 (96)
T ss_dssp             CEECTTTCSCEESSHHHHHHHHH--HH-C---------------------CCCCCCSSSCCCCSSHHHHHHH
T ss_pred             CcCCCCCCCCcccCHHHHHHHHH--HH-C---------------------CCCeECCCCCCeeCCHHHHHHH
Confidence            45 99999999 99999999963  22 0                     1357799999999999999988

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=94.30  E-value=0.02  Score=43.70  Aligned_cols=48  Identities=27%  Similarity=0.436  Sum_probs=40.7

Q ss_pred             ccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          170 QTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       170 ~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ++.|.+|+..|.....|..|+.-  |   .          ..|-|++|+..|.+...|..|++
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~~--H---~----------~~~~C~~C~k~f~~~~~l~~H~~  121 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIRY--T---E----------HTKVCPVCKKEFTSTDSALDHVC  121 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHHH--T---C----------CCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHhHHHHHHHH--C---C----------CCCCCCCCCcccCCHHHHHHHHH
Confidence            57799999999999999988752  4   1          14779999999999999999975

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.22  E-value=0.042  Score=38.45  Aligned_cols=53  Identities=19%  Similarity=0.375  Sum_probs=39.4

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|+.  .|-        ..         ......+.|.+|+..|.....|..|++
T Consensus        15 ~~~C~~C~~~f~~~~~l~~H~~--~~~--------~~---------~~~~~~~~C~~C~~~f~~~~~L~~H~~   68 (86)
T 1x6h_A           15 PYACSHCDKTFRQKQLLDMHFK--RYH--------DP---------NFVPAAFVCSKCGKTFTRRNTMARHAD   68 (86)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH--HTT--------CS---------SCCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCcCCCCCCccCCHHHHHHHHH--Hhc--------CC---------cCCCcceECCCCCChhCCHHHHHHHHH
Confidence            45 9999999999999999964  111        00         001135779999999999999998864

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.88  E-value=0.028  Score=38.94  Aligned_cols=52  Identities=19%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             ccccccc--ccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCc--cccccCCHHHHHHhhc
Q 047603          169 KQTWCRL--CNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKL--CDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~l--CnV~~~Se~~m~~HL~  232 (259)
                      ..+.|..  |+..|.+...|..|+.- .|.           ....|.|.+  |+..|.+...|..|++
T Consensus         6 ~~~~C~~~~C~~~f~~~~~L~~H~~~-~H~-----------~~~~~~C~~~~C~k~f~~~~~L~~H~~   61 (79)
T 2dlk_A            6 SGMPCDFPGCGRIFSNRQYLNHHKKY-QHI-----------HQKSFSCPEPACGKSFNFKKHLKEHMK   61 (79)
T ss_dssp             SSEECSSTTTCCEESSHHHHHHHHHH-GGG-----------SCCCEECSCTTTCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHHH-HhC-----------CCCCeECCCCCCcCccCCHHHHHHHHH
Confidence            4566876  99999999999988751 121           123577999  9999999999999985

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.67  E-value=0.039  Score=42.03  Aligned_cols=57  Identities=21%  Similarity=0.356  Sum_probs=41.7

Q ss_pred             ccCCcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHh
Q 047603          165 KVGEKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMH  230 (259)
Q Consensus       165 ~~~~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~H  230 (259)
                      +.+..++.|..|+..|.....|..|++- .|..        ......|-|++|+..|.+...|..|
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~-~H~~--------~~~ekpf~C~~Cgk~F~~~~~L~~H   69 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDS-EHPN--------VVLNSSYVCVECNFLTKRYDALSEH   69 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHH-HCSS--------CCCSCCEEETTTTEEESSTHHHHTH
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHh-hCCC--------CCCCCCcCCCCCCcccCCHHHHHHH
Confidence            3445577899999999999999887641 1100        0012257799999999999999999

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=93.28  E-value=0.042  Score=34.68  Aligned_cols=23  Identities=22%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             CCcccCCccccccCCHHHHHHhh
Q 047603          209 GEQKWCKLCDVWCPNGDAFKMHL  231 (259)
Q Consensus       209 ~~~~~C~lCnV~~~Se~~m~~HL  231 (259)
                      ...++|+.|+++|++-..|..|.
T Consensus         6 ~~~~~C~~C~IsF~~l~ty~aHK   28 (36)
T 1fu9_A            6 VMKKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CCCSEETTTTEECSSHHHHHHHH
T ss_pred             cCcCeeccccceehhhHHHhhhh
Confidence            44788999999999999999995

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=93.17  E-value=0.096  Score=36.76  Aligned_cols=51  Identities=20%  Similarity=0.455  Sum_probs=40.7

Q ss_pred             ccccccc--ccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCC--ccccccCCHHHHHHhhc
Q 047603          169 KQTWCRL--CNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCK--LCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~--lCnV~~~Se~~m~~HL~  232 (259)
                      ..+.|.+  |+..|.+...|..|+.-  |.           ....|.|.  .|+..|.+...|..|++
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~~--h~-----------~~~~~~C~~~~C~~~f~~~~~l~~H~~   58 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLRT--HT-----------GEKPYHCDWDGCGWKFARSDELTRHYR   58 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHTT--SC-----------SSCCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHHh--cC-----------CCCCcCCCCCCCCCccCCHHHHHHHHH
Confidence            3567999  99999999999988762  21           22357797  59999999999999984

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=93.08  E-value=0.13  Score=35.04  Aligned_cols=48  Identities=25%  Similarity=0.490  Sum_probs=38.5

Q ss_pred             CCCC--CcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCccccccc--ccCccCCHHHHHHHhc
Q 047603          121 FCSI--CHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRL--CNIGFSSEELFRLHLN  191 (259)
Q Consensus       121 ~C~l--C~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~l--Cnv~~~S~~~l~sHl~  191 (259)
                      .|.+  |+..|.+...|..|+.  .|.                     +...+.|.+  |+..|.....|..|++
T Consensus        19 ~C~~~~C~k~f~~~~~L~~H~~--~H~---------------------~~~~~~C~~~~C~k~f~~~~~l~~H~~   70 (72)
T 2epa_A           19 ICSHPGCGKTYFKSSHLKAHTR--THT---------------------GEKPFSCSWKGCERRFARSDELSRHRR   70 (72)
T ss_dssp             ECSSTTTCCEESSHHHHHHHHH--HHS---------------------SSCSEECCCTTCCCEESSHHHHHHHTT
T ss_pred             eCCCCCCccccCCHHHHHHHHH--hcC---------------------CCCCccCCCCCCCcccCCHHHHHhHhh
Confidence            3999  9999999999999963  331                     123577975  9999999999999874

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=92.73  E-value=0.14  Score=33.18  Aligned_cols=44  Identities=20%  Similarity=0.354  Sum_probs=32.8

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCC
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPN  223 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~S  223 (259)
                      ...+.|.+|...|.....|..|++- .|           .....|.|.+|+..|.+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~-~H-----------~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQ-VH-----------TSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHH-TS-----------CCCCCCCSSSSCCSSCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHH-hc-----------CCCCCccCCCCCCCCCC
Confidence            4467799999999999999988631 11           12235779999999876

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.55  E-value=0.027  Score=38.17  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=38.7

Q ss_pred             cccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCC-ccccccCCHHHHHHhhc
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCK-LCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~-lCnV~~~Se~~m~~HL~  232 (259)
                      ..+.|..|+..|. ...|..|+.-        .      +...|-|. .|+..|.....|..|++
T Consensus         9 ~~~~C~~C~k~f~-~~~L~~H~~~--------~------~~~p~~C~~~C~k~f~~~~~L~~H~~   58 (66)
T 2eod_A            9 RTQPCTYCTKEFV-FDTIQSHQYQ--------C------PRLPVACPNQCGVGTVAREDLPGHLK   58 (66)
T ss_dssp             CEEECSSSCCEEE-HHHHHHHHHH--------C------SSSEEECTTCCSCCEEETTTHHHHHH
T ss_pred             CCeeccccCCccC-HHHHHHHHHH--------c------CCcCccCCcccCcccccHHHHHHHHH
Confidence            4567999999999 9889887641        0      12256699 99999999999999975

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=92.41  E-value=0.061  Score=40.94  Aligned_cols=47  Identities=30%  Similarity=0.651  Sum_probs=37.4

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |.+|+..|.+...|..|..  .|                       ..++.|.+|+..|.....|..|++
T Consensus        74 ~~~C~~C~k~f~~~~~l~~H~~--~H-----------------------~~~~~C~~C~k~f~~~~~l~~H~~  121 (129)
T 2wbt_A           74 QFVCPLCLMPFSSSVSLKQHIR--YT-----------------------EHTKVCPVCKKEFTSTDSALDHVC  121 (129)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH--HT-----------------------CCCCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHhHHHHHHH--HC-----------------------CCCCCCCCCCcccCCHHHHHHHHH
Confidence            35 8888888888888888864  24                       014679999999999999998865

>4dgw_A PRE-mRNA-splicing factor PRP9; zinc finger; 3.11A {Saccharomyces cerevisiae}

Probab=92.26  E-value=0.044  Score=51.88  Aligned_cols=34  Identities=21%  Similarity=0.442  Sum_probs=30.6

Q ss_pred             CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHh
Q 047603          118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQEL  151 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l  151 (259)
                      ..+||..|+-.|.++.++..|+.||+|+++++..
T Consensus       291 ~~l~C~~c~K~Fs~~~v~~~hL~GKkh~K~~~~~  324 (402)
T 4dgw_A          291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKR  324 (402)
T ss_dssp             TEECBTTTTBCBSSHHHHHTTSSSHHHHHHHHHS
T ss_pred             cCeeehhhhhhhccccccHHHhcccccchhHHHH
Confidence            3589999999999999999999999999987643

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.18  E-value=0.19  Score=35.81  Aligned_cols=56  Identities=14%  Similarity=0.100  Sum_probs=38.6

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      |.+|+..|.+...|..|..- .|..        ..    +. ....-..+.|.+|+..|.+...|..|++
T Consensus        28 C~~C~k~f~~~~~L~~H~~~-~H~~--------~~----~~-~~~~c~~~~C~~C~k~f~~~~~L~~H~~   83 (95)
T 2ej4_A           28 KKSCDRTFSTMHELVTHVTM-EHVG--------GP----EQ-NNHVCYWEECPREGKSFKAKYKLVNHIR   83 (95)
T ss_dssp             CCCCCCCCSSHHHHHHHHHH-TTTC--------CT----TC-SCCCCCCTTCSSTTCCCSSHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHHHH-hccC--------CC----CC-CccceeccCCCCCCcccCCHHHHHHHHH
Confidence            99999999999999999641 1321        00    00 0000012569999999999999998875

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.27  E-value=0.046  Score=37.02  Aligned_cols=45  Identities=20%  Similarity=0.324  Sum_probs=35.7

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccc-cccCccCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCR-LCNIGFSSEELFRLHLN  191 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~-lCnv~~~S~~~l~sHl~  191 (259)
                      |..|+..|. ...|..|..-                        .+...+.|. .|+..|.....|..|++
T Consensus        13 C~~C~k~f~-~~~L~~H~~~------------------------~~~~p~~C~~~C~k~f~~~~~L~~H~~   58 (66)
T 2eod_A           13 CTYCTKEFV-FDTIQSHQYQ------------------------CPRLPVACPNQCGVGTVAREDLPGHLK   58 (66)
T ss_dssp             CSSSCCEEE-HHHHHHHHHH------------------------CSSSEEECTTCCSCCEEETTTHHHHHH
T ss_pred             ccccCCccC-HHHHHHHHHH------------------------cCCcCccCCcccCcccccHHHHHHHHH
Confidence            999999999 9999998520                        012357799 99999988888888864

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=90.98  E-value=0.24  Score=35.39  Aligned_cols=51  Identities=22%  Similarity=0.517  Sum_probs=40.4

Q ss_pred             ccccccc--ccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCC--ccccccCCHHHHHHhhc
Q 047603          169 KQTWCRL--CNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCK--LCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~l--Cnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~--lCnV~~~Se~~m~~HL~  232 (259)
                      ..+.|.+  |+..|.+...|..|++  .|.           ....|.|.  .|+..|.+...|..|++
T Consensus        14 ~~~~C~~~~C~~~f~~~~~l~~H~~--~h~-----------~~~~~~C~~~~C~~~f~~~~~l~~H~~   68 (100)
T 2ebt_A           14 RIHYCDYPGCTKVYTKSSHLKAHLR--THT-----------GEKPYKCTWEGCDWRFARSDELTRHYR   68 (100)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHH--HHS-----------CCCCEECCSSSCCCEESSHHHHHHHHH
T ss_pred             cceEcCCCCCCCcccCHHHHHHHHH--HhC-----------CCCCeeCCCCCCCCccCCHHHHHHHHH
Confidence            4567997  9999999999998875  232           12246795  69999999999999974

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=90.91  E-value=0.21  Score=32.30  Aligned_cols=41  Identities=29%  Similarity=0.485  Sum_probs=31.1

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCC
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSS  182 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S  182 (259)
                      .| |.+|...|.....|..|+. ..|.                     +...+.|.+|...|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~-~~H~---------------------~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           12 PYICQSCGKGFSRPDHLNGHIK-QVHT---------------------SERPHKCQVWVSGPSS   53 (54)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH-HTSC---------------------CCCCCCSSSSCCSSCC
T ss_pred             CeECCCCCcccCCHHHHHHHHH-HhcC---------------------CCCCccCCCCCCCCCC
Confidence            35 9999999999999999963 0121                     1235779999998876

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.27  E-value=0.053  Score=40.36  Aligned_cols=54  Identities=11%  Similarity=0.156  Sum_probs=39.9

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCccc-CCcccccc--CCHHHHHHhhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKW-CKLCDVWC--PNGDAFKMHLD  232 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~-C~lCnV~~--~Se~~m~~HL~  232 (259)
                      ...+.|.+|+..|.+...|..|+.-..|           -....++ |.+|+..|  .+...|..|++
T Consensus        17 ~~~~~C~~C~k~f~~~~~L~~H~~~~~h-----------~~~~~~~~C~~C~~~f~f~~~~~l~~H~~   73 (115)
T 2dmi_A           17 ASKFRCKDCSAAYDTLVELTVHMNETGH-----------YRDDNHETDNNNPKRWSKPRKRSLLEMEG   73 (115)
T ss_dssp             CCSEEBSSSSCEESSHHHHHHHHHHTCC-----------CBCSCCCCCCCCCSCCSSCCCCCCCCCCC
T ss_pred             CCCEECCccCchhcCHHHHHHHHHHhCc-----------cccCCCccCCCCCcccccccHHHHHHHhh
Confidence            3467799999999999999988752001           0122345 99999988  88888888875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=89.98  E-value=0.22  Score=26.67  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=19.3

Q ss_pred             ccCCccccccCCHHHHHHhhc
Q 047603          212 KWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      |-|.+|+..|.+...|..|++
T Consensus         2 ~~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            2 YKCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG
T ss_pred             ccCCCCCCcCCCHHHHHHHHH
Confidence            569999999999999999985

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=89.74  E-value=0.36  Score=30.17  Aligned_cols=38  Identities=21%  Similarity=0.268  Sum_probs=28.7

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCD  218 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCn  218 (259)
                      ...+.|.+|...|.....|..|++-  |.           ....|-|++|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~--H~-----------~~k~~~C~~C~   47 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKLS--HS-----------GEKPYSSGPSS   47 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG--SC-----------SCCCCCSCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHHh--cC-----------CCCCccCCCCC
Confidence            4467799999999999999999752  21           12357799996

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=89.69  E-value=0.18  Score=31.77  Aligned_cols=21  Identities=24%  Similarity=0.597  Sum_probs=19.0

Q ss_pred             CCCCCCCCcccCCCHHHHHHH
Q 047603          118 DSNFCSICHVPCSSAFNYNQH  138 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~H  138 (259)
                      ...+|..|+++|++-..+..|
T Consensus         7 ~~~~C~~C~IsF~~l~ty~aH   27 (36)
T 1fu9_A            7 MKKYCSTCDISFNYVKTYLAH   27 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHH
T ss_pred             CcCeeccccceehhhHHHhhh
Confidence            347799999999999999999

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.47  E-value=0.51  Score=28.84  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHT
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHH
Confidence            346779999999999999998875

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.25  E-value=0.43  Score=29.36  Aligned_cols=24  Identities=21%  Similarity=0.475  Sum_probs=20.8

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           10 GKHFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             SCCEECSSSCCEESCHHHHHHHGG
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH
Confidence            346779999999999999999875

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.17  E-value=0.58  Score=28.66  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHGG
T ss_pred             CcCeECCCCCCeeCCHHHHHHHhh
Confidence            346779999999999999998875

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=89.16  E-value=0.56  Score=28.75  Aligned_cols=24  Identities=46%  Similarity=0.747  Sum_probs=20.8

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGG
T ss_pred             CcCeECCCCCcccCCHHHHHHHHH
Confidence            346779999999999999999975

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=89.00  E-value=0.58  Score=28.65  Aligned_cols=24  Identities=29%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CCCeECCCCCceeCCHHHHHHHHH
Confidence            346779999999999999998875

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.89  E-value=0.62  Score=28.61  Aligned_cols=24  Identities=33%  Similarity=0.609  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMR   33 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHT
T ss_pred             CCCcCCCccChhhCChHHHHHHHH
Confidence            346779999999999999998875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=88.83  E-value=0.25  Score=26.74  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.7

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|+.
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            3669999999999999999975

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.63  E-value=0.62  Score=28.46  Aligned_cols=24  Identities=33%  Similarity=0.523  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eop_A           10 EKPHECRECGKSFSFNSQLIVHQR   33 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CCCeeCCCCCchhCCHHHHHHHHH
Confidence            346779999999999999998875

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.60  E-value=0.5  Score=28.91  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=27.5

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCcc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLC  217 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lC  217 (259)
                      ...+.|.+|+..|.+...|..|+.  .|.           ....|.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~-----------~~~~~~C~~C   46 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQR--IHT-----------GEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHG--GGC-----------CCSCCSSCCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHH--hcC-----------CCCCCCCCCC
Confidence            346779999999999999998875  232           1235669887

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=88.48  E-value=0.097  Score=49.62  Aligned_cols=33  Identities=24%  Similarity=0.488  Sum_probs=29.5

Q ss_pred             CCCCCCcc------cCCCHHHHHHHhcCCchHHHHHHhH
Q 047603          120 NFCSICHV------PCSSAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       120 ~~C~lC~V------~~tSe~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      ++|++|+.      ++.++..-+.|+.|++|+++++...
T Consensus       361 ~~Ce~C~~~~~~~~~~~ge~~W~~H~ksr~Hk~~~~~~~  399 (409)
T 3eph_A          361 YTCNVCRNADGKNVVAIGEKYWKIHLGSRRHKSNLKRNT  399 (409)
T ss_dssp             EEEEEEECTTSCEEEEESHHHHHHHHTSHHHHHHHHHHH
T ss_pred             eeCCCCCCCCCCcceEEcHHHHHHHhhhhHHHHHHHHHH
Confidence            34999998      8999999999999999999998654

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.40  E-value=0.6  Score=28.67  Aligned_cols=24  Identities=25%  Similarity=0.488  Sum_probs=20.9

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CCCeeCcccCchhCCHHHHHHHHH
Confidence            346779999999999999999976

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.34  E-value=0.51  Score=28.95  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eq0_A           10 EKPYKCHECGKVFRRNSHLARHQL   33 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH
Confidence            346779999999999999998875

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=88.27  E-value=0.33  Score=36.78  Aligned_cols=51  Identities=18%  Similarity=0.367  Sum_probs=38.2

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHH
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLH  189 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sH  189 (259)
                      .| |.+|+..|.+...|..|..- .|.        +          ..+..++.|++|+..|.....|..|
T Consensus        18 py~C~~Cgk~F~~~~~L~~H~r~-~H~--------~----------~~~ekpf~C~~Cgk~F~~~~~L~~H   69 (102)
T 2ghf_A           18 GYECKYCTFQTPDLNMFTFHVDS-EHP--------N----------VVLNSSYVCVECNFLTKRYDALSEH   69 (102)
T ss_dssp             SEECSSCSCEESCHHHHHHHHHH-HCS--------S----------CCCSCCEEETTTTEEESSTHHHHTH
T ss_pred             CcCCCCCCCccCCHHHHHHHHHh-hCC--------C----------CCCCCCcCCCCCCcccCCHHHHHHH
Confidence            45 99999999999999998530 121        0          0112357799999999999999877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.19  E-value=0.54  Score=28.80  Aligned_cols=24  Identities=25%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.+...|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQR   33 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCCeECCCCCchhCChHHHHHHHh
Confidence            346779999999999999998875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=88.13  E-value=0.35  Score=25.74  Aligned_cols=20  Identities=15%  Similarity=0.436  Sum_probs=18.2

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus         3 ~C~~C~k~f~~~~~l~~H~~   22 (27)
T 1znf_A            3 KCGLCERSFVEKSALSRHQR   22 (27)
T ss_dssp             BCSSSCCBCSSHHHHHHHGG
T ss_pred             cCCCCCCcCCCHHHHHHHHH
Confidence            39999999999999999974

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.00  E-value=0.53  Score=28.77  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=27.3

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCcc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLC  217 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lC  217 (259)
                      ...+.|.+|+..|.+...|..|+.  .|.           ....|.|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~--~H~-----------~~~~~~C~~C   46 (46)
T 2eov_A           10 EKPYKCSDCGKSFTWKSRLRIHQK--CHT-----------GERHSGPSSG   46 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHH--HHS-----------CCSSCCSCCC
T ss_pred             CCCccCCccChhhCCHHHHHHHHH--hcC-----------CCCCCCCCCC
Confidence            346779999999999999998864  332           1224668887

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.99  E-value=0.51  Score=28.86  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=20.6

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoe_A           10 EKPYKCNECGKVFTQNSHLANHQR   33 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHG
T ss_pred             CCCeECCCcChhhCCHHHHHHHHH
Confidence            346779999999999999998875

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.94  E-value=0.54  Score=28.87  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.+...|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCCeECCcCCCccCCHHHHHHHHH
Confidence            346779999999999999998875

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=87.86  E-value=0.24  Score=29.48  Aligned_cols=21  Identities=14%  Similarity=0.306  Sum_probs=19.1

Q ss_pred             CCCCCCcccCCCHHHHHHHhc
Q 047603          120 NFCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      +-|.+|...+.+...+++|+.
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            349999999999999999985

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=87.82  E-value=0.27  Score=26.59  Aligned_cols=22  Identities=14%  Similarity=0.300  Sum_probs=19.7

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            3 PYSCSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             SEECSSSCCEESCHHHHHHHHT
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            3569999999999999999975

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=87.80  E-value=0.59  Score=28.56  Aligned_cols=24  Identities=25%  Similarity=0.361  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQR   33 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHGG
T ss_pred             CCceECCCCCchhCCHHHHHHHHH
Confidence            346779999999999999999975

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.79  E-value=0.57  Score=28.69  Aligned_cols=24  Identities=29%  Similarity=0.571  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHH
Confidence            346779999999999999998875

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=87.74  E-value=0.59  Score=28.72  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQR   33 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            346779999999999999998875

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=87.69  E-value=0.42  Score=25.75  Aligned_cols=20  Identities=15%  Similarity=0.544  Sum_probs=18.1

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus         4 ~C~~C~~~f~~~~~l~~H~~   23 (29)
T 1ard_A            4 VCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             BCTTTCCBCSSHHHHHHHHH
T ss_pred             ECCCCCcccCCHHHHHHHHH
Confidence            39999999999999999964

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.68  E-value=0.68  Score=28.34  Aligned_cols=24  Identities=25%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           10 EKPFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCCcCCCcCCchhCCHHHHHHHHH
Confidence            346779999999999999988864

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.67  E-value=0.63  Score=28.40  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=20.3

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CCCeECCCCCCccCchHHHHHHHH
Confidence            346779999999999999998864

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=87.60  E-value=0.2  Score=31.23  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCch
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKH  144 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKH  144 (259)
                      |.|.+|.+.|++...|+.||. ++|
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye-~~H   29 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYE-AVH   29 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHH-HHT
T ss_pred             cCCcHHHHHcCCHHHHHHHHH-hcc
Confidence            559999999999999999996 444

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.57  E-value=0.62  Score=28.51  Aligned_cols=24  Identities=29%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em7_A           10 EKPYKCEECGKGFICRRDLYTHHM   33 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHGG
T ss_pred             CcCccCCCccchhCCHHHHHHHHH
Confidence            346779999999999999999975

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.52  E-value=0.41  Score=29.40  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=27.4

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCcc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLC  217 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lC  217 (259)
                      ...+.|.+|+..|.....|..|+.  .|.           +...|-|++|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~--~H~-----------~~~~~~C~~c   46 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWR--IHT-----------GEKPSGPSSG   46 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHH--HHS-----------SSSCSSCCCC
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHH--HHC-----------CCCCCCCCCC
Confidence            346779999999999999998864  232           1225669887

>4f9c_B Protein DBF4 homolog A; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_B* 4f9b_B* 4f9a_B*

Probab=87.41  E-value=0.16  Score=41.47  Aligned_cols=27  Identities=19%  Similarity=0.329  Sum_probs=22.9

Q ss_pred             cccCCccccccCCHHHHHHhhcchHHHHHH
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRL  240 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~l  240 (259)
                      .-||++|.+.|.+   |..|+.+.+|+.-+
T Consensus        87 ~GyCE~C~~~y~~---l~~H~~s~~Hr~fa  113 (144)
T 4f9c_B           87 KGYCECCLQKYED---LETHLLSEQHRNFA  113 (144)
T ss_dssp             -CEETTTTEECSC---HHHHHHSHHHHHHH
T ss_pred             CCCccchhhhhhh---HHHHcCCHHHHHHH
Confidence            4699999999994   78999999998654

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.32  E-value=0.6  Score=28.59  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQR   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHT
T ss_pred             CCCeeCcccCcccCChHHHHHHHH
Confidence            346779999999999999999875

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=87.32  E-value=0.33  Score=26.19  Aligned_cols=19  Identities=26%  Similarity=0.583  Sum_probs=18.0

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.+...|..|..
T Consensus         6 C~~C~k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            6 CSVCGKRFSLKHQMETHYR   24 (28)
T ss_dssp             CSSSCCEESCHHHHHHHHT
T ss_pred             CCCCCcccCCHHHHHHHHH
Confidence            9999999999999999975

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.29  E-value=0.53  Score=28.85  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytj_A           10 EKPYICAECGKAFTIRSNLIKHQK   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCeECCCCChhhCCHHHHHHHHH
Confidence            346779999999999999998864

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=87.25  E-value=0.58  Score=28.67  Aligned_cols=24  Identities=25%  Similarity=0.592  Sum_probs=20.6

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep2_A           10 EKPYECSICGKSFTKKSQLHVHQQ   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH
Confidence            346779999999999999998875

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=87.13  E-value=0.58  Score=28.66  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ema_A           10 EKRYKCNECGKVFSRNSQLSQHQK   33 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHT
T ss_pred             CcCcCCCCCcchhCCHHHHHHHHH
Confidence            346779999999999999998875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=86.98  E-value=0.4  Score=27.80  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|++|+..|.....|..|++
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           11 PFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CccCCCCCcccCcHHHHHHHHH
Confidence            5679999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.92  E-value=0.27  Score=26.47  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.5

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            3 PFSCSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            3569999999999999999974

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=86.91  E-value=0.69  Score=28.22  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em9_A           10 EKPYNCKECGKSFRWASCLLKHQR   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGG
T ss_pred             CcCeECCccccccCChHHHHHHHH
Confidence            346779999999999999999975

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=86.89  E-value=0.38  Score=27.53  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus         7 ~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            7 PFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            5669999999999999999985

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.87  E-value=0.78  Score=28.04  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=27.4

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCcc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLC  217 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lC  217 (259)
                      ...+.|.+|+..|.....|..|+.  .|..           ...|.|++|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~--~H~~-----------~k~~~C~~c   46 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQK--IHTG-----------EKPSGPSSG   46 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHH--HHHC-----------SSCSSSCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH--hcCC-----------CCCCCCCCC
Confidence            346779999999999999998864  3431           124668887

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=86.86  E-value=0.27  Score=28.07  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.+...|..|++
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCcchhCCHHHHHHHHH
Confidence            4669999999999999999975

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.81  E-value=0.36  Score=25.93  Aligned_cols=19  Identities=26%  Similarity=0.597  Sum_probs=17.7

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.+...|..|..
T Consensus         6 C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            6 CSLCPQRSRDFSAMTKHLR   24 (27)
T ss_dssp             CSSSSCEESSHHHHHHHHH
T ss_pred             CCCcChhhCCHHHHHHHHH
Confidence            9999999999999999963

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.76  E-value=0.51  Score=27.05  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=18.6

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|...|.+...|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            9 THLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeecCcCCCCcCchHHHHHHHH
Confidence            35 9999999999999999963

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.75  E-value=1  Score=27.57  Aligned_cols=24  Identities=25%  Similarity=0.383  Sum_probs=20.6

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH
Confidence            346779999999999999998875

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=86.57  E-value=0.28  Score=26.67  Aligned_cols=22  Identities=27%  Similarity=0.691  Sum_probs=19.7

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            3 PYRCPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             TEEETTTTEEESCHHHHHHHHT
T ss_pred             CcCCCCCCcccCCHHHHHHHHH
Confidence            4669999999999999999975

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=86.56  E-value=0.71  Score=28.32  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=20.5

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           10 EKPYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             SCSCBCSSSCCBCSCHHHHHHHHH
T ss_pred             CCceECCCCCchhCCHHHHHHHHH
Confidence            346779999999999999998874

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.53  E-value=0.52  Score=28.90  Aligned_cols=24  Identities=25%  Similarity=0.358  Sum_probs=20.5

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQR   33 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHH
Confidence            346779999999999999998865

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.37  E-value=0.4  Score=27.52  Aligned_cols=22  Identities=18%  Similarity=0.364  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|...|.+...|..|++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elr_A            9 THLCDMCGKKFKSKGTLKSHKL   30 (36)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeecCcCCCCcCchHHHHHHHH
Confidence            5669999999999999999974

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.31  E-value=0.64  Score=28.46  Aligned_cols=24  Identities=29%  Similarity=0.551  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|...|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQK   33 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH
Confidence            346779999999999999998875

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.31  E-value=0.54  Score=28.74  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=20.4

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQR   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHH
Confidence            346779999999999999998864

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=86.30  E-value=0.25  Score=26.80  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|..|+..|.+...|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            2 KFACPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CEECSSSSCEESCSHHHHHHHT
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            3669999999999999999986

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.24  E-value=0.66  Score=28.38  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=20.4

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ..++.|.+|...|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQR   33 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHH
Confidence            346779999999999999998864

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=86.03  E-value=0.59  Score=27.04  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=18.6

Q ss_pred             CCCCCCcccCCCHHHHHHHhc
Q 047603          120 NFCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      +-|.+|+..|.....|..|..
T Consensus        12 ~~C~~C~k~f~~~~~l~~H~~   32 (37)
T 1p7a_A           12 FQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             BCCTTTCCCBSSHHHHHHHHG
T ss_pred             ccCCCCCcccCcHHHHHHHHH
Confidence            339999999999999999964

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=86.03  E-value=0.58  Score=28.66  Aligned_cols=37  Identities=22%  Similarity=0.222  Sum_probs=27.2

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCcc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLC  217 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lC  217 (259)
                      ...+.|.+|+..|.....|..|+.  .|.           +...|.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~-----------~~~~~~C~~C   46 (46)
T 2ytd_A           10 EKPYKCSECGKAFHRHTHLNEHRR--IHT-----------GYRPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH--HHT-----------CCCSSCSSCC
T ss_pred             CcCeECCCCCCeeCChHHHHHHHH--HcC-----------CCCCCCCCCC
Confidence            346779999999999999998864  232           1224669887

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.97  E-value=0.66  Score=28.40  Aligned_cols=24  Identities=25%  Similarity=0.448  Sum_probs=20.7

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQR   33 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHH
Confidence            346779999999999999999975

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.96  E-value=0.56  Score=28.43  Aligned_cols=24  Identities=33%  Similarity=0.563  Sum_probs=20.4

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~   31 (44)
T 2emx_A            8 EKPFGCSCCEKAFSSKSYLLVHQQ   31 (44)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH
Confidence            346779999999999999998864

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=85.95  E-value=0.45  Score=27.34  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.6

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|+.
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            2 KFACPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             cccCCCCCchhCCHHHHHHHHH
Confidence            3669999999999999999985

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.94  E-value=0.36  Score=27.90  Aligned_cols=22  Identities=18%  Similarity=0.190  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            9 LYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            4669999999999999999986

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.91  E-value=0.83  Score=27.83  Aligned_cols=24  Identities=29%  Similarity=0.522  Sum_probs=20.5

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQR   33 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHHT
T ss_pred             CCCeECCCcCcccCCHHHHHHHHH
Confidence            346779999999999999998875

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=85.87  E-value=0.33  Score=26.12  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.+...|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            3669999999999999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=85.64  E-value=0.37  Score=26.14  Aligned_cols=19  Identities=26%  Similarity=0.852  Sum_probs=17.9

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.....|..|..
T Consensus         6 C~~C~k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            6 CPLCRAGCPSLASMQAHMR   24 (27)
T ss_dssp             ETTTTEEESCHHHHHHHHT
T ss_pred             CCCCCcccCCHHHHHHHHH
Confidence            9999999999999999974

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=85.61  E-value=0.44  Score=27.10  Aligned_cols=21  Identities=19%  Similarity=0.683  Sum_probs=18.7

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus         7 ~~~C~~C~k~f~~~~~L~~H~~   28 (35)
T 2elx_A            7 GYVCALCLKKFVSSIRLRSHIR   28 (35)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCcchhCCHHHHHHHHH
Confidence            35 9999999999999999964

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=85.31  E-value=0.47  Score=27.10  Aligned_cols=21  Identities=38%  Similarity=0.754  Sum_probs=18.9

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.....|..|..
T Consensus         7 ~~~C~~C~k~f~~~~~l~~H~~   28 (35)
T 1srk_A            7 PFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            35 9999999999999999974

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.28  E-value=0.36  Score=27.77  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            9 PYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            5669999999999999999974

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.20  E-value=0.51  Score=28.93  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=20.5

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQR   33 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHH
T ss_pred             CcCeECCCCCcccCchHHHHHHHH
Confidence            346779999999999999998865

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=85.43  E-value=0.17  Score=27.11  Aligned_cols=21  Identities=14%  Similarity=0.332  Sum_probs=19.1

Q ss_pred             ccCCccccccCCHHHHHHhhc
Q 047603          212 KWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      |-|++|+..|.+...|..|++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            3 YVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            569999999999999999975

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=85.16  E-value=0.56  Score=28.83  Aligned_cols=24  Identities=33%  Similarity=0.576  Sum_probs=20.4

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHK   33 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHH
T ss_pred             CCCcccCccCcccCCHHHHHHHHH
Confidence            346779999999999999998865

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=85.16  E-value=0.66  Score=26.56  Aligned_cols=19  Identities=16%  Similarity=0.417  Sum_probs=17.7

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.+...|..|..
T Consensus         5 C~~C~k~F~~~~~L~~H~~   23 (33)
T 1rim_A            5 CPECPKRFMRSDHLSKHIT   23 (33)
T ss_dssp             CSSSCCCCSSHHHHHHHHH
T ss_pred             CCCCCchhCCHHHHHHHHH
Confidence            9999999999999999964

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.14  E-value=0.37  Score=27.84  Aligned_cols=22  Identities=23%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            9 PFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             SEECSSSSCEESCHHHHHHHHH
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            4669999999999999999974

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=85.04  E-value=1.2  Score=27.20  Aligned_cols=37  Identities=22%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCcc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLC  217 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lC  217 (259)
                      ...+.|.+|+..|.....|..|+.  .|.           +...|-|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~-----------~~k~~~C~~C   46 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQV--IHT-----------GEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHH--HHH-----------CCSCCSCCCC
T ss_pred             CcCeECCCCCchhCCHHHHHHHHH--HcC-----------CCCCCCCCCC
Confidence            345779999999999999998874  342           1224668887

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.83  E-value=0.59  Score=28.04  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           11 PYPCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHTT
T ss_pred             CEECCCCCCccCCHHHHHHHHH
Confidence            5679999999999999999986

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.69  E-value=1.2  Score=27.19  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=27.5

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCcc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLC  217 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lC  217 (259)
                      ...+.|.+|...|.....|..|+.  .|..           ...|.|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-----------~~~~~C~~C   46 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQR--VHTG-----------EKLSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH--HHHC-----------CCCCCSCCC
T ss_pred             CCCeECcccCchhCCHHHHHHHHH--HHcC-----------CCCCCCCCC
Confidence            346779999999999999998875  3431           124669887

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=84.58  E-value=0.41  Score=25.84  Aligned_cols=22  Identities=18%  Similarity=0.318  Sum_probs=19.5

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|..|+..|.+...|..|++
T Consensus         3 ~~~C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            3 PYQCDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHH
Confidence            4669999999999999999975

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.56  E-value=0.61  Score=28.72  Aligned_cols=22  Identities=14%  Similarity=0.235  Sum_probs=20.3

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           12 PYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHTT
T ss_pred             ccCCCCCCcccCcHHHHHHHHH
Confidence            5779999999999999999986

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.46  E-value=0.54  Score=27.10  Aligned_cols=21  Identities=19%  Similarity=0.630  Sum_probs=19.0

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elv_A            9 LYDCHICERKFKNELDRDRHML   30 (36)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            35 9999999999999999975

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.11  E-value=0.42  Score=27.61  Aligned_cols=22  Identities=18%  Similarity=0.332  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            9 IFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEECCCCCceeCCHHHHHHHHH
Confidence            5669999999999999999975

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.07  E-value=0.57  Score=26.98  Aligned_cols=21  Identities=33%  Similarity=0.730  Sum_probs=18.7

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elq_A            9 PFKCSLCEYATRSKSNLKAHMN   30 (36)
T ss_dssp             SEECSSSSCEESCHHHHHHHHH
T ss_pred             CccCCCCCchhCCHHHHHHHHH
Confidence            35 9999999999999999964

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=84.04  E-value=0.76  Score=28.03  Aligned_cols=38  Identities=24%  Similarity=0.454  Sum_probs=27.9

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCD  218 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCn  218 (259)
                      ...+.|.+|...|.....|..|++  .|.           ....|-|.+|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~--~H~-----------~~~~~~C~~cg   45 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVR--SHD-----------GSVGKSGPSSG   45 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHH--HHS-----------CCCCCCCCCCC
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHH--Hcc-----------CCCCCCCcCCC
Confidence            346779999999999999998864  232           12256698884

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.01  E-value=0.59  Score=27.88  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A           10 PYSCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5779999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.99  E-value=0.66  Score=28.41  Aligned_cols=22  Identities=14%  Similarity=0.262  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           12 PFICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHT
T ss_pred             CEECCccCcccCCHHHHHHHHH
Confidence            5679999999999999999986

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=83.95  E-value=0.46  Score=25.62  Aligned_cols=22  Identities=18%  Similarity=0.576  Sum_probs=19.4

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHH
T ss_pred             CccCCCCCCccCCHHHHHHHHH
Confidence            3569999999999999999975

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.82  E-value=0.67  Score=27.91  Aligned_cols=22  Identities=14%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           12 PYVCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             SSCCTTTCCCCSSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHhh
Confidence            5779999999999999999985

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.72  E-value=0.61  Score=28.57  Aligned_cols=24  Identities=21%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytg_A           10 EKPFKCGECGKSYNQRVHLTQHQR   33 (46)
T ss_dssp             CCSEECTTTCCEESSSHHHHTTGG
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH
Confidence            346779999999999999998875

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.66  E-value=0.81  Score=27.95  Aligned_cols=24  Identities=29%  Similarity=0.263  Sum_probs=20.3

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yso_A           10 EKSHQCRECGEIFFQYVSLIEHQV   33 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH
T ss_pred             CCCEEccccChhhCCHHHHHHHHH
Confidence            345779999999999999998864

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.65  E-value=0.45  Score=27.58  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            4669999999999999999975

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=83.63  E-value=0.64  Score=25.01  Aligned_cols=19  Identities=26%  Similarity=0.679  Sum_probs=17.5

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.....|..|..
T Consensus         5 C~~C~k~f~~~~~l~~H~~   23 (30)
T 1klr_A            5 CQYCEFRSADSSNLKTHIK   23 (30)
T ss_dssp             CSSSSCCCSCSHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHH
Confidence            9999999999999999964

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=83.61  E-value=0.63  Score=25.04  Aligned_cols=19  Identities=26%  Similarity=0.511  Sum_probs=17.8

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.....|..|..
T Consensus         6 C~~C~~~f~~~~~l~~H~~   24 (30)
T 2m0d_A            6 CDYCGRSFSDPTSKMRHLE   24 (30)
T ss_dssp             CTTTCCEESCHHHHHHHHH
T ss_pred             CCCCCcccCCHHHHHHHHH
Confidence            9999999999999999974

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.56  E-value=0.9  Score=27.30  Aligned_cols=20  Identities=20%  Similarity=0.298  Sum_probs=18.4

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2en7_A           14 VCNECGKAFRSKSYLIIHTR   33 (44)
T ss_dssp             CCTTTCCCCSSHHHHHHHHT
T ss_pred             ECCCCCCccCCHHHHHHHhh
Confidence            39999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=83.56  E-value=0.6  Score=24.98  Aligned_cols=19  Identities=26%  Similarity=0.592  Sum_probs=17.6

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.+...|..|..
T Consensus         5 C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            5 CRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CTTTSCEESCHHHHHHHHH
T ss_pred             CCCCCCccCChhHHHHHHH
Confidence            9999999999999999964

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.42  E-value=0.87  Score=27.81  Aligned_cols=20  Identities=30%  Similarity=0.388  Sum_probs=18.5

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emg_A           14 ICSECGKVFTHKTNLIIHQK   33 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHHT
T ss_pred             ECCccCcccCCHHHHHHHHH
Confidence            39999999999999999975

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=83.40  E-value=0.43  Score=25.53  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|..|+..|.+...|..|++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~   23 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLK   23 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHH
T ss_pred             CCcCCCCCcccCCHHHHHHHHH
Confidence            3569999999999999999974

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.38  E-value=0.82  Score=28.08  Aligned_cols=21  Identities=19%  Similarity=0.475  Sum_probs=19.0

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eon_A           12 PYKCQVCGKAFRVSSHLVQHHS   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHTT
T ss_pred             ccCCCCCCcccCcHHHHHHHHH
Confidence            35 9999999999999999974

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=83.35  E-value=0.46  Score=25.67  Aligned_cols=19  Identities=16%  Similarity=0.317  Sum_probs=18.0

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|.+...|..|..
T Consensus         5 C~~C~k~f~~~~~l~~H~~   23 (29)
T 1rik_A            5 CPECPKRFMRSDHLTLHIL   23 (29)
T ss_dssp             CSSSSCEESCSHHHHHHHT
T ss_pred             CCCCCchhCCHHHHHHHHH
Confidence            9999999999999999975

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.34  E-value=0.63  Score=26.88  Aligned_cols=21  Identities=24%  Similarity=0.619  Sum_probs=18.7

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (37)
T 2elo_A            9 SYSCPVCEKSFSEDRLIKSHIK   30 (37)
T ss_dssp             CCEETTTTEECSSHHHHHHHHH
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            35 9999999999999999964

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.30  E-value=0.63  Score=26.63  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=18.7

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2elt_A            9 PYKCPQCSYASAIKANLNVHLR   30 (36)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            35 9999999999999999964

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.28  E-value=0.64  Score=28.54  Aligned_cols=22  Identities=14%  Similarity=0.270  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           12 LFKCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CEECCccCcccCCHHHHHHHHH
Confidence            5779999999999999999975

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=83.85  E-value=0.23  Score=27.15  Aligned_cols=21  Identities=14%  Similarity=0.354  Sum_probs=19.2

Q ss_pred             ccCCccccccCCHHHHHHhhc
Q 047603          212 KWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      |-|++|+..|.+...|..|++
T Consensus         3 ~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2lvt_A            3 CQCVMCGKAFTQASSLIAHVR   23 (29)
Confidence            569999999999999999975

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.17  E-value=0.84  Score=27.29  Aligned_cols=20  Identities=25%  Similarity=0.506  Sum_probs=18.4

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2eos_A           13 PCEICGTRFRHLQTLKSHLR   32 (42)
T ss_dssp             CCSSSCCCBSSHHHHHHHTT
T ss_pred             ECCCCCCccCCHHHHHHHHH
Confidence            39999999999999999975

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.17  E-value=0.89  Score=27.02  Aligned_cols=20  Identities=30%  Similarity=0.406  Sum_probs=18.1

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2yte_A           12 SCAECKETFSDNNRLVQHQK   31 (42)
T ss_dssp             BCTTTCCBCSSHHHHHHHHH
T ss_pred             ECCCCCCccCCHHHHHHHHH
Confidence            39999999999999999964

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.07  E-value=0.78  Score=28.05  Aligned_cols=22  Identities=14%  Similarity=0.208  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5679999999999999999985

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.07  E-value=0.77  Score=28.00  Aligned_cols=22  Identities=14%  Similarity=0.191  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           12 PYECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             SSCCSSSCCCCSSHHHHHHHHG
T ss_pred             CcCCCCCCchhCCHHHHHHHHH
Confidence            5679999999999999999986

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=83.07  E-value=0.87  Score=27.96  Aligned_cols=20  Identities=25%  Similarity=0.426  Sum_probs=18.3

Q ss_pred             CCCCCCcccCCCHHHHHHHh
Q 047603          120 NFCSICHVPCSSAFNYNQHL  139 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl  139 (259)
                      +.|..|+.+|++...|..|.
T Consensus         9 ~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            9 FMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CEETTTTEECSCHHHHHHHH
T ss_pred             eECCCCCCccCCHhHccCcC
Confidence            33999999999999999996

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.00  E-value=1.1  Score=27.41  Aligned_cols=37  Identities=22%  Similarity=0.267  Sum_probs=27.4

Q ss_pred             CcccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCcc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLC  217 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lC  217 (259)
                      ...+.|.+|+..|.....|..|+.  .|..           ...|-|++|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~--~H~~-----------~~~~~C~~C   46 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQNSHLARHRR--VHTG-----------GKPSGPSSG   46 (46)
T ss_dssp             CSSEECSSSCCEESSSHHHHHHTH--HHHS-----------CCCSCSCCC
T ss_pred             CCCeECCcCCchhCCHHHHHHHHH--hcCC-----------CCCCCCCCC
Confidence            346779999999999999998874  3431           124668887

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.99  E-value=0.8  Score=28.00  Aligned_cols=22  Identities=14%  Similarity=0.215  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           12 PYQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             SSSCCSSCCCCSSHHHHHHHGG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5779999999999999999985

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.95  E-value=1.3  Score=27.04  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=20.5

Q ss_pred             CcccccccccCccCCHHHHHHHhc
Q 047603          168 EKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       168 ~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ...+.|.+|+..|.....|..|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLK   33 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCCEEccccCcccCCHHHHHHHHH
Confidence            346779999999999999998864

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.81  E-value=0.98  Score=27.49  Aligned_cols=20  Identities=20%  Similarity=0.278  Sum_probs=18.4

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep1_A           14 ECSDCGKSFIKKSQLHVHQR   33 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHG
T ss_pred             CCCCCCchhCCHHHHHHHHH
Confidence            39999999999999999975

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=83.47  E-value=0.24  Score=27.01  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=19.6

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.+...|..|++
T Consensus         3 ~~~C~~C~k~f~~~~~l~~H~~   24 (30)
T 2lvr_A            3 PYVCIHCQRQFADPGALQRHVR   24 (30)
Confidence            3669999999999999999975

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.80  E-value=0.83  Score=28.00  Aligned_cols=22  Identities=14%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           12 PFQCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHGG
T ss_pred             CCCCCCCCcccCCHHHHHHHHH
Confidence            5679999999999999999985

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.79  E-value=1.4  Score=26.83  Aligned_cols=21  Identities=29%  Similarity=0.615  Sum_probs=18.9

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            35 9999999999999999974

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.70  E-value=0.71  Score=28.32  Aligned_cols=22  Identities=18%  Similarity=0.136  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           12 PYECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCCCCcCchhCCHHHHHHHHH
Confidence            5779999999999999999974

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=82.61  E-value=0.52  Score=27.87  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus         6 ~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            6 SYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             ceECCCCCcccCCHHHHHHHHH
Confidence            4669999999999999999975

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.56  E-value=0.8  Score=27.99  Aligned_cols=22  Identities=14%  Similarity=0.084  Sum_probs=20.3

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2epz_A           12 PFDCIDCGKAFSDHIGLNQHRR   33 (46)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHT
T ss_pred             CeECCCCCceeCCHHHHHHHHH
Confidence            5779999999999999999986

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.56  E-value=0.84  Score=27.81  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=19.8

Q ss_pred             cccccccccCccCCHHHHHHHhc
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      ..+-|.+|+..|.....|..|+.
T Consensus        11 k~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2epw_A           11 KPCKCTECGKAFCWKSQLIMHQR   33 (46)
T ss_dssp             CSEECSSSCCEESSSHHHHHHHH
T ss_pred             CCeeCCCCCCccCCHHHHHHHHH
Confidence            45779999999999999998864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.54  E-value=0.67  Score=27.60  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           11 PYRCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             SBCCTTTTCCBSSHHHHHTTGG
T ss_pred             CeeCCCccchhCCHHHHHHHHH
Confidence            5679999999999999999985

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.53  E-value=0.6  Score=28.43  Aligned_cols=22  Identities=14%  Similarity=0.075  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.....|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           12 PYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CeECCCCCcccCchHHHHHHHh
Confidence            5679999999999999999986

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.45  E-value=1  Score=27.48  Aligned_cols=21  Identities=14%  Similarity=0.342  Sum_probs=18.9

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enf_A           12 PYKCNECGKVFTQNSHLVRHRG   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            35 9999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.39  E-value=0.85  Score=27.93  Aligned_cols=22  Identities=14%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           12 CYKCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             CCBCSSSCCBCSSHHHHHHHHT
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5779999999999999999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.34  E-value=0.82  Score=27.94  Aligned_cols=22  Identities=14%  Similarity=0.151  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           12 PYKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCCTTTTCCCSSHHHHHHHHT
T ss_pred             CeECCcCChhhCCHHHHHHHHH
Confidence            5779999999999999999986

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.30  E-value=0.7  Score=26.57  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=18.7

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.....|..|..
T Consensus         9 ~~~C~~C~k~f~~~~~l~~H~~   30 (36)
T 2els_A            9 IFTCEYCNKVFKFKHSLQAHLR   30 (36)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEECCCCCceeCCHHHHHHHHH
Confidence            35 9999999999999999964

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.11  E-value=0.86  Score=27.90  Aligned_cols=22  Identities=14%  Similarity=0.154  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytt_A           12 PYQCSECGKSFSGSYRLTQHWI   33 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CeeCCCCCcccCCHHHHHHHHH
Confidence            5679999999999999999985

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.09  E-value=0.67  Score=27.59  Aligned_cols=22  Identities=14%  Similarity=0.241  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A           10 VYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CEECSSSCCEESSHHHHHHHGG
T ss_pred             CeECCCCCCCcCCHHHHHHHHH
Confidence            5669999999999999999985

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=82.09  E-value=0.6  Score=29.00  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.1

Q ss_pred             CCcccCCccccccCCHHHHHHhhc
Q 047603          209 GEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       209 ~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .+.|.|.+|-+.+.+..+|..|..
T Consensus         3 ~EGFiCP~C~~~l~s~~~L~~Hye   26 (34)
T 3mjh_B            3 SEGFICPQCMKSLGSADELFKHYE   26 (34)
T ss_dssp             SEEEECTTTCCEESSHHHHHHHHH
T ss_pred             CcccCCcHHHHHcCCHHHHHHHHH
Confidence            345889999999999999999983

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.08  E-value=0.77  Score=28.22  Aligned_cols=22  Identities=18%  Similarity=0.377  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|++|+..|.....|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           12 GHRCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCCCCCCCeeCChHHHHHHHH
Confidence            5679999999999999999974

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.07  E-value=1.1  Score=27.39  Aligned_cols=21  Identities=14%  Similarity=0.373  Sum_probs=18.9

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CeECCCCCcccCChhHHHHHhH
Confidence            35 9999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.02  E-value=1  Score=27.55  Aligned_cols=20  Identities=15%  Similarity=0.386  Sum_probs=18.2

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2en9_A           14 KCNECKKTFTQSSSLTVHQR   33 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHHH
T ss_pred             ECCccCcccCCHHHHHHHHH
Confidence            39999999999999999964

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.02  E-value=0.79  Score=27.94  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eov_A           12 PYKCSDCGKSFTWKSRLRIHQK   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHHH
T ss_pred             CccCCccChhhCCHHHHHHHHH
Confidence            5779999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.95  E-value=1.1  Score=27.34  Aligned_cols=21  Identities=19%  Similarity=0.365  Sum_probs=18.7

Q ss_pred             CCCCCCcccCCCHHHHHHHhc
Q 047603          120 NFCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      +-|.+|+..|.+...|..|..
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq2_A           13 YQCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             SSCCSSCCCCSSHHHHHHHGG
T ss_pred             eECCCCCcccCCHHHHHHHHH
Confidence            339999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=81.93  E-value=0.66  Score=27.71  Aligned_cols=22  Identities=18%  Similarity=0.200  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            5669999999999999999985

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.76  E-value=1.1  Score=27.31  Aligned_cols=21  Identities=19%  Similarity=0.275  Sum_probs=18.8

Q ss_pred             CCCCCCcccCCCHHHHHHHhc
Q 047603          120 NFCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      +-|.+|+..|.+...|..|..
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq1_A           13 YKCNECGKAFRAHSNLTTHQV   33 (46)
T ss_dssp             CCCTTTTCCCSSHHHHHHHHT
T ss_pred             eECCcCChhhCCHHHHHHHHH
Confidence            339999999999999999975

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=81.76  E-value=0.56  Score=29.60  Aligned_cols=22  Identities=18%  Similarity=0.400  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.....|..|++
T Consensus         7 p~~C~~C~k~F~~~~~L~~H~~   28 (48)
T 3iuf_A            7 PYACDICGKRYKNRPGLSYHYA   28 (48)
T ss_dssp             CEECTTTCCEESSHHHHHHHHH
T ss_pred             CEECCCcCcccCCHHHHHHHhh
Confidence            5679999999999999999986

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.65  E-value=0.97  Score=27.66  Aligned_cols=23  Identities=13%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             cccCCccccccCCHHHHHHhhcc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~G  233 (259)
                      .|.|++|+..|.+...|..|++-
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2ytq_A           12 PYGCSECGKAFSSKSYLIIHMRT   34 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHTT
T ss_pred             CcCCCccChhhCChHHHHHHHHH
Confidence            56799999999999999999863

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.59  E-value=0.93  Score=27.68  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2yti_A           12 PYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             TTCCSSSCCCCSSHHHHHHHHT
T ss_pred             CeECCCCCcccCChhHHHHHhH
Confidence            5669999999999999999985

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.57  E-value=1.1  Score=27.38  Aligned_cols=20  Identities=15%  Similarity=0.358  Sum_probs=18.3

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yth_A           14 QCEECGKRFTQNSHLHSHQR   33 (46)
T ss_dssp             CCSSSCCCBSSHHHHHHHGG
T ss_pred             CCCCCCcccCCHHHHHHHHH
Confidence            39999999999999999974

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=81.55  E-value=1.2  Score=27.15  Aligned_cols=22  Identities=18%  Similarity=0.572  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.....|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em0_A           12 TWKCRECDMCFSQASSLRLHQN   33 (46)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHGG
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5679999999999999999985

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=81.49  E-value=0.79  Score=27.00  Aligned_cols=21  Identities=29%  Similarity=0.635  Sum_probs=18.8

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus         6 ~~~C~~C~k~f~~~~~L~~H~~   27 (39)
T 1njq_A            6 SYTCSFCKREFRSAQALGGHMN   27 (39)
T ss_dssp             SEECTTTCCEESSHHHHHHHHH
T ss_pred             ceECCCCCcccCCHHHHHHHHH
Confidence            35 9999999999999999974

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=81.48  E-value=0.81  Score=27.31  Aligned_cols=21  Identities=19%  Similarity=0.384  Sum_probs=18.9

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (42)
T 2el5_A           10 PYECSECGKAFNRKDQLISHQR   31 (42)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CccCCCcChhhCCHHHHHHHHH
Confidence            35 9999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.46  E-value=1.2  Score=27.30  Aligned_cols=20  Identities=20%  Similarity=0.477  Sum_probs=18.4

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em6_A           14 KCDVCGKEFSQSSHLQTHQR   33 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHHT
T ss_pred             ECCCCCcccCCHHHHHHHHH
Confidence            39999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.45  E-value=0.69  Score=28.29  Aligned_cols=22  Identities=14%  Similarity=0.220  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            5669999999999999999985

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.43  E-value=0.96  Score=27.60  Aligned_cols=22  Identities=14%  Similarity=0.128  Sum_probs=20.3

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           12 PYECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             SBCCSSSCCCBSSHHHHHHHHT
T ss_pred             CEECCccCchhCChHHHHHHhH
Confidence            5779999999999999999986

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.37  E-value=1.3  Score=27.12  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=20.3

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2elz_A           12 PYKCEDCGKGYNRRLNLDMHQR   33 (46)
T ss_dssp             SCBCSSSCCBCSSHHHHHHHGG
T ss_pred             CeeCcccCchhCCHHHHHHHHH
Confidence            5779999999999999999986

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=81.36  E-value=0.73  Score=25.01  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.7

Q ss_pred             cccCCccccccCCHHHHHHhh
Q 047603          211 QKWCKLCDVWCPNGDAFKMHL  231 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL  231 (259)
                      .|-|..|+..|.+...|..|+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            2 AYACGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CSBCTTTCCBCSSSHHHHHHH
T ss_pred             CcCCcccCcccCChHHHHHHH
Confidence            366999999999999999994

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.27  E-value=0.97  Score=27.52  Aligned_cols=23  Identities=13%  Similarity=0.182  Sum_probs=20.6

Q ss_pred             cccCCccccccCCHHHHHHhhcc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~G  233 (259)
                      .|-|++|+..|.+...|..|++-
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~~   34 (46)
T 2eop_A           12 PHECRECGKSFSFNSQLIVHQRI   34 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHTT
T ss_pred             CeeCCCCCchhCCHHHHHHHHHH
Confidence            57799999999999999999863

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.26  E-value=1.2  Score=27.26  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.5

Q ss_pred             CCCCCCcccCCCHHHHHHHhc
Q 047603          120 NFCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      +-|.+|+..|.....|..|..
T Consensus        13 ~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoh_A           13 YECKECRKTFIQIGHLNQHKR   33 (46)
T ss_dssp             CCCSSSCCCCSSHHHHHHHHH
T ss_pred             cCCCCcCchhCCHHHHHHHHH
Confidence            339999999999999999964

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.21  E-value=1.2  Score=27.33  Aligned_cols=20  Identities=35%  Similarity=0.393  Sum_probs=18.2

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.....|..|..
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2eom_A           14 RCSDCGKFFLQASNFIQHRR   33 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHH
T ss_pred             CCCCCCCeeCChHHHHHHHH
Confidence            39999999999999999964

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=81.21  E-value=0.64  Score=27.71  Aligned_cols=22  Identities=14%  Similarity=0.303  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           11 PYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHhh
Confidence            5669999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.13  E-value=0.75  Score=28.04  Aligned_cols=22  Identities=14%  Similarity=0.191  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yts_A           12 PYICNECGKSFIQKSHLNRHRR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHGG
T ss_pred             CEECCCCChhhCChHHHHHHHH
Confidence            5669999999999999999985

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.12  E-value=0.73  Score=28.26  Aligned_cols=22  Identities=14%  Similarity=0.282  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2enh_A           12 PYECDVCRKAFSHHASLTQHQR   33 (46)
T ss_dssp             SCBCTTTCCBCSSSHHHHHHGG
T ss_pred             CcCCCCcCchhCCHHHHHHHHH
Confidence            5779999999999999999986

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=81.08  E-value=0.81  Score=24.80  Aligned_cols=18  Identities=17%  Similarity=0.401  Sum_probs=17.1

Q ss_pred             CCCCcccCCCHHHHHHHh
Q 047603          122 CSICHVPCSSAFNYNQHL  139 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl  139 (259)
                      |..|+..|.+...|..|.
T Consensus         5 C~~C~k~f~~~~~l~~H~   22 (30)
T 1paa_A            5 CGLCNRAFTRRDLLIRHA   22 (30)
T ss_dssp             CTTTCCBCSSSHHHHHHH
T ss_pred             CcccCcccCChHHHHHHH
Confidence            999999999999999994

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.05  E-value=0.64  Score=28.45  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5669999999999999999974

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.98  E-value=0.97  Score=27.50  Aligned_cols=22  Identities=14%  Similarity=0.203  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytr_A           12 PYKCNECGKAFSQTSKLARHQR   33 (46)
T ss_dssp             TTCCTTTCCCCSSHHHHHHHHT
T ss_pred             CcCCCCCCCccCCHHHHHHHHH
Confidence            5679999999999999999986

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.90  E-value=0.66  Score=27.96  Aligned_cols=22  Identities=14%  Similarity=0.217  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|+.
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eof_A           12 PYECNECQKAFNTKSNLMVHQR   33 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CeECCCCCcccCCHhHHHHHHH
Confidence            5679999999999999999974

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.86  E-value=0.79  Score=28.08  Aligned_cols=22  Identities=18%  Similarity=0.299  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emf_A           12 HFECTECGKAFTRKSTLSMHQK   33 (46)
T ss_dssp             CEECSSSCCEESCHHHHHHHGG
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            5669999999999999999986

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.80  E-value=0.75  Score=28.11  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emi_A           12 HYECSECGKAFIQKSTLSMHQR   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG
T ss_pred             CCCCCCCCcccCCHHHHHHHHh
Confidence            5679999999999999999985

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.80  E-value=1.3  Score=26.95  Aligned_cols=22  Identities=14%  Similarity=0.228  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2ytn_A           12 PYKCNECGKVFTQNSHLARHRG   33 (46)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHGG
T ss_pred             CeECCCCCCeeCCHHHHHHHhh
Confidence            5679999999999999999985

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.78  E-value=0.89  Score=27.55  Aligned_cols=22  Identities=14%  Similarity=0.234  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eou_A           12 TSECQECGKIFRHSSLLIEHQA   33 (44)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5679999999999999999974

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.73  E-value=0.87  Score=27.66  Aligned_cols=21  Identities=14%  Similarity=0.194  Sum_probs=18.9

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.....|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (44)
T 2epv_A           12 PYECNECGKAFIWKSLLIVHER   33 (44)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CeECCCCCcccCchHHHHHHHh
Confidence            45 9999999999999999975

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.63  E-value=0.77  Score=28.00  Aligned_cols=22  Identities=14%  Similarity=0.210  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2yrj_A           12 PYRCGECGKAFAQKANLTQHQR   33 (46)
T ss_dssp             CEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5669999999999999999985

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.61  E-value=0.93  Score=27.74  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.....|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           12 PFKCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            5679999999999999999975

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.60  E-value=0.93  Score=27.31  Aligned_cols=21  Identities=24%  Similarity=0.355  Sum_probs=19.0

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.....|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHT
T ss_pred             CeeCCCCCCccCCHHHHHHHHH
Confidence            45 9999999999999999975

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.60  E-value=0.82  Score=27.19  Aligned_cols=20  Identities=20%  Similarity=0.330  Sum_probs=18.2

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.+...|..|..
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2ytb_A           13 RCDQCGKAFSQKGSLIVHIR   32 (42)
T ss_dssp             CCTTTTCCBSSHHHHHTTGG
T ss_pred             eCCCccchhCCHHHHHHHHH
Confidence            39999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.55  E-value=0.9  Score=27.74  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ep3_A           12 PYRCAECGKAFTDRSNLFTHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCCCCchhCCHHHHHHHHH
Confidence            45 9999999999999999974

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.54  E-value=0.89  Score=27.01  Aligned_cols=21  Identities=14%  Similarity=0.319  Sum_probs=18.9

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.....|..|..
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (41)
T 2ept_A           10 VYECQECGKSFRQKGSLTLHER   31 (41)
T ss_dssp             CEECSSSCCEESSHHHHHHHGG
T ss_pred             CeECCCCCCCcCCHHHHHHHHH
Confidence            35 9999999999999999974

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.52  E-value=0.92  Score=27.85  Aligned_cols=22  Identities=14%  Similarity=0.184  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2ytm_A           12 PYKCMECGKAFGDNSSCTQHQR   33 (46)
T ss_dssp             SSSBTTTTBCCSSHHHHHHHHH
T ss_pred             CcCCCCCCchhCCHHHHHHHHH
Confidence            5679999999999999999984

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.47  E-value=0.78  Score=28.10  Aligned_cols=22  Identities=14%  Similarity=0.211  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2em5_A           12 SHQCHECGRGFTLKSHLNQHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHT
T ss_pred             CeECCcCCCccCCHHHHHHHHH
Confidence            5679999999999999999985

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.46  E-value=0.96  Score=27.39  Aligned_cols=22  Identities=23%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        10 ~~~C~~C~k~f~~~~~L~~H~~   31 (43)
T 2yrm_A           10 AFFCNECDCRFSEEASLKRHTL   31 (43)
T ss_dssp             CBCCSSSCCCBSSHHHHHHHHH
T ss_pred             CEECCCCCCeeCChHHHHHHHH
Confidence            5679999999999999999974

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.46  E-value=0.77  Score=28.00  Aligned_cols=22  Identities=14%  Similarity=0.214  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq3_A           12 PYECNQCGKAFSVRSSLTTHQA   33 (46)
T ss_dssp             SSEETTTTEECSSHHHHHHHHT
T ss_pred             CeECCCCChhhCCHHHHHHHHH
Confidence            5669999999999999999985

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.46  E-value=0.82  Score=27.65  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2emb_A           12 RYECSKCQATFNLRKHLIQHQK   33 (44)
T ss_dssp             SEECTTTCCEESCHHHHHHHGG
T ss_pred             CeECCCCCCccCCHHHHHHHHH
Confidence            5679999999999999999985

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.45  E-value=0.95  Score=27.62  Aligned_cols=22  Identities=14%  Similarity=0.181  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eoq_A           12 PFKCDICGKSFCGRSRLNRHSM   33 (46)
T ss_dssp             SCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CcCCCcCCchhCCHHHHHHHHH
Confidence            5779999999999999999975

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.43  E-value=1.3  Score=26.99  Aligned_cols=20  Identities=15%  Similarity=0.243  Sum_probs=18.4

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.....|..|..
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~   33 (47)
T 2epx_A           14 ECIECGKAFIQNTSLIRHWR   33 (47)
T ss_dssp             CCSSSCCCBSSHHHHHHHHT
T ss_pred             ECCccCchhCChHHHHHHhH
Confidence            39999999999999999975

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.24  E-value=0.97  Score=27.50  Aligned_cols=22  Identities=18%  Similarity=0.196  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eq4_A           12 LYNCKECGKSFSRAPCLLKHER   33 (46)
T ss_dssp             CCCBTTTTBCCSCHHHHHHHHH
T ss_pred             CeECCCCCCccCchHHHHHHHH
Confidence            5679999999999999999974

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=80.20  E-value=0.92  Score=26.95  Aligned_cols=21  Identities=14%  Similarity=0.387  Sum_probs=18.7

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus        11 ~~~C~~C~k~f~~~~~l~~H~~   32 (42)
T 2epc_A           11 PYLCGQCGKSFTQRGSLAVHQR   32 (42)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHhh
Confidence            35 9999999999999999963

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=80.17  E-value=1  Score=27.55  Aligned_cols=22  Identities=18%  Similarity=0.199  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2emk_A           12 PYECKECGKAFSQTTHLIQHQR   33 (46)
T ss_dssp             SCBCSSSCCBCSCHHHHHHHHH
T ss_pred             ceECCCCCchhCCHHHHHHHHH
Confidence            5679999999999999999974

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.16  E-value=0.53  Score=27.31  Aligned_cols=22  Identities=18%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             cccCCccccccCCH-HHHHHhhc
Q 047603          211 QKWCKLCDVWCPNG-DAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se-~~m~~HL~  232 (259)
                      .|.|.+|+..|.+. ..|..|+.
T Consensus         9 ~~~C~~C~k~f~~~~~~L~~H~~   31 (37)
T 2elp_A            9 AMKCPYCDFYFMKNGSDLQRHIW   31 (37)
T ss_dssp             CEECSSSSCEECSSCHHHHHHHH
T ss_pred             CeECCCCChhhccCHHHHHHHHH
Confidence            56699999999999 99999974

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.12  E-value=0.7  Score=27.60  Aligned_cols=22  Identities=14%  Similarity=0.262  Sum_probs=20.0

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        11 ~~~C~~C~k~f~~~~~L~~H~~   32 (42)
T 2en2_A           11 PYKCETCGARFVQVAHLRAHVL   32 (42)
T ss_dssp             SEECTTTCCEESSHHHHHHHTH
T ss_pred             CEeCCCcChhhCCHHHHHHHHH
Confidence            5669999999999999999985

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.09  E-value=0.81  Score=27.60  Aligned_cols=22  Identities=18%  Similarity=0.210  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.....|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (44)
T 2eoj_A           12 PYECCECGKVFSRKDQLVSHQK   33 (44)
T ss_dssp             SCEETTTTEECSSHHHHHHHHT
T ss_pred             CeeCCCCCCccCCHHHHHHHHH
Confidence            5669999999999999999986

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.08  E-value=0.98  Score=27.56  Aligned_cols=22  Identities=14%  Similarity=0.345  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.+...|..|++
T Consensus        12 ~~~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2eml_A           12 PYECSVCGKAFSHRQSLSVHQR   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHG
T ss_pred             CeeCCCcCCccCCHHHHHHHHH
Confidence            5669999999999999999985

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.08  E-value=1.3  Score=26.98  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=18.2

Q ss_pred             CCCCCcccCCCHHHHHHHhc
Q 047603          121 FCSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       121 ~C~lC~V~~tSe~~l~~Hl~  140 (259)
                      -|.+|+..|.....|..|..
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~   33 (46)
T 2emz_A           14 KCNECGKGFGRRSHLAGHLR   33 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHH
T ss_pred             ECCCCCcccCCHHHHHHHHH
Confidence            39999999999999999974

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=80.04  E-value=0.82  Score=28.10  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=19.5

Q ss_pred             cccCCccccccCCHHHHHHhh
Q 047603          211 QKWCKLCDVWCPNGDAFKMHL  231 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL  231 (259)
                      .|.|..|+..|.+...|..|+
T Consensus         8 p~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCEETTTTEECSCHHHHHHHH
T ss_pred             CeECCCCCCccCCHhHccCcC
Confidence            566999999999999999997

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.01  E-value=0.92  Score=27.69  Aligned_cols=21  Identities=24%  Similarity=0.607  Sum_probs=18.7

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|.+...|..|..
T Consensus        12 ~~~C~~C~k~F~~~~~L~~H~~   33 (46)
T 2em3_A           12 PYECKVCSKAFTQKAHLAQHQK   33 (46)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CeECCCCCcccCCHHHHHHHHH
Confidence            45 9999999999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	259
d1zr9a1	67	g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593	0.002

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 208 GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRL-------YEIEKNRRAENLGSY 255
           GG    C  C  +  +    K H   K+H  RL       Y  E+  RA  +GSY
Sbjct: 12  GGGLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSY 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	259
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.92
d1zu1a2	55	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	98.55
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	98.41
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.96
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	97.74
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	97.21
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	97.2
d2vrda1	61	Spliceosomal protein U1C {Human (Homo sapiens) [Ta	96.96
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	96.49
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.62
d1fu9a_	36	U-shaped transcription factor, different fingers {	93.51
d1fu9a_	36	U-shaped transcription factor, different fingers {	93.08
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	92.81
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	92.42
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	92.34
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	91.73
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	91.03
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	89.29
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	89.24
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	88.9
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	87.62
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	87.54
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	87.1
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	86.63
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	86.5
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	86.01
d1y0jb1	36	U-shaped transcription factor, different fingers {	85.62
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	85.37
d1y0jb1	36	U-shaped transcription factor, different fingers {	83.94
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	83.86
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	83.71
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	83.13
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	82.88
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	82.68
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	81.82
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	81.32

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.92  E-value=4.9e-10  Score=75.91  Aligned_cols=31  Identities=26%  Similarity=0.543  Sum_probs=29.3

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHH
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQE  150 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~  150 (259)
                      .||.||+++|+|+.++++||.||+|+++++.
T Consensus        22 k~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~   52 (55)
T d1zu1a2          22 KCCPVCNMTFSSPVVAESHYIGKTHIKNLRL   52 (55)
T ss_dssp             TEETTTTEECSSHHHHHHHHTSHHHHHHHHH
T ss_pred             hhhhhhhcccCCHHHHHHHhhhhHHHHHHHH
Confidence            5799999999999999999999999999974

>d1zu1a2 g.37.1.4 (A:74-128) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=98.55  E-value=2.2e-08  Score=67.65  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=33.2

Q ss_pred             CCCcccCCccccccCCHHHHHHhhcchHHHHHHHHHH
Q 047603          208 GGEQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIE  244 (259)
Q Consensus       208 ~~~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~  244 (259)
                      .+...||.|||.+|+|..+.++|+.||+|+++|+.++
T Consensus        18 ~d~nk~C~lCn~~Fns~~~AqsHY~GK~H~K~lk~~~   54 (55)
T d1zu1a2          18 EDRSKCCPVCNMTFSSPVVAESHYIGKTHIKNLRLRE   54 (55)
T ss_dssp             CCTTTEETTTTEECSSHHHHHHHHTSHHHHHHHHHHH
T ss_pred             CCchhhhhhhhcccCCHHHHHHHhhhhHHHHHHHHhc
Confidence            3456789999999999999999999999999998764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4.3e-08  Score=69.25  Aligned_cols=46  Identities=28%  Similarity=0.542  Sum_probs=39.9

Q ss_pred             CcccCCccccccCCHHHHHHhhcchHHHHHHHHHHHH-------HhhccCCCC
Q 047603          210 EQKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEIEKN-------RRAENLGSY  255 (259)
Q Consensus       210 ~~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~~~~-------~~~~~~g~~  255 (259)
                      +.|||-.|+..|.|+.+|..|+++|+|+++|+.+...       -.+-|.|+|
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~~p~t~~eae~AaG~Gs~   66 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSVEPYSQEEAERAAGMGSY   66 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTSCSSCTTTSSCSCCCCCC
T ss_pred             CEEecccccCccCCHHHHHHHHcccHHHHHHHHhccCcCCHHHHHHhcCCcCC
Confidence            4799999999999999999999999999999998432       445677877

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.96  E-value=1.4e-06  Score=61.02  Aligned_cols=35  Identities=23%  Similarity=0.394  Sum_probs=32.0

Q ss_pred             CCCCCCCCcccCCCHHHHHHHhcCCchHHHHHHhH
Q 047603          118 DSNFCSICHVPCSSAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      .+.||.||+|.+.|+++..+||.||||.+|++.+.
T Consensus        31 td~~CkvC~a~L~seSQriaHYeskkHa~kvr~yf   65 (72)
T d1zu1a1          31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYM   65 (72)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             chhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999998754

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=4.8e-06  Score=58.46  Aligned_cols=34  Identities=24%  Similarity=0.515  Sum_probs=32.3

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHhHh
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQELKL  153 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~  153 (259)
                      +||.+|+..|.|+.+|+.|..+|+|+++++.|+.
T Consensus        16 fYCv~C~K~F~se~~l~~H~ksKkHKrrvk~L~~   49 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFRSKDHKKRLKQLSV   49 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTTCHHHHHHHHHHTS
T ss_pred             EecccccCccCCHHHHHHHHcccHHHHHHHHhcc
Confidence            7899999999999999999999999999998864

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.21  E-value=9.1e-05  Score=51.63  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=30.6

Q ss_pred             cccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI  243 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~  243 (259)
                      ..||.+|++...|+++-.+|+.|+||.++|+..
T Consensus        32 d~~CkvC~a~L~seSQriaHYeskkHa~kvr~y   64 (72)
T d1zu1a1          32 DTQCKVCSAVLISESQKLAHYQSRKHANKVRRY   64 (72)
T ss_dssp             SSEETTTTEECCSHHHHHHHHHCHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467999999999999999999999999999765

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=0.0001  Score=50.55  Aligned_cols=35  Identities=26%  Similarity=0.487  Sum_probs=30.4

Q ss_pred             CCCCCCCCcccCC--CHHHHHHHhcCCchHHHHHHhH
Q 047603          118 DSNFCSICHVPCS--SAFNYNQHLKGRKHKAKLQELK  152 (259)
Q Consensus       118 ~~~~C~lC~V~~t--Se~~l~~Hl~GKKHkkk~~~l~  152 (259)
                      +++||+.|++.++  |...-..|+.|++|+.+++..-
T Consensus         2 pryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~yy   38 (61)
T d2vrda1           2 PKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYY   38 (61)
T ss_dssp             CSCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHHT
T ss_pred             CchhhhhhcchhccCChhHHHHHhccHHHHHHHHHHH
Confidence            4678999999995  6778899999999999998754

>d2vrda1 g.37.1.4 (A:1-61) Spliceosomal protein U1C {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Spliceosomal protein U1C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00024  Score=48.58  Aligned_cols=33  Identities=21%  Similarity=0.513  Sum_probs=28.2

Q ss_pred             cccCCccccccC--CHHHHHHhhcchHHHHHHHHH
Q 047603          211 QKWCKLCDVWCP--NGDAFKMHLDGKNHILRLYEI  243 (259)
Q Consensus       211 ~~~C~lCnV~~~--Se~~m~~HL~GkKH~~~lk~~  243 (259)
                      .|||+.|++.++  |..+=..|+.|++|+.+++..
T Consensus         3 ryyCdYC~~~lt~ds~s~RK~H~~G~kH~~n~~~y   37 (61)
T d2vrda1           3 KFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDY   37 (61)
T ss_dssp             SCEETTTTEECSCCSHHHHHHHTCCTHHHHHHHHH
T ss_pred             chhhhhhcchhccCChhHHHHHhccHHHHHHHHHH
Confidence            689999999995  456668999999999998764

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00073  Score=44.02  Aligned_cols=50  Identities=20%  Similarity=0.324  Sum_probs=40.5

Q ss_pred             cccccccccCccCCHHHHHHHhchhhHHHHHHHhhhccCCCCcccCCccccccCCHHHHHHhhc
Q 047603          169 KQTWCRLCNIGFSSEELFRLHLNAKKHKALQRAKCTLKGGGEQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       169 ~~~~C~lCnv~~~S~~~l~sHl~GkKH~~~~k~~e~l~g~~~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ..+.|+ |+..|+....|..|.+  .|.           +...|-|.+|+..|+....|..|++
T Consensus         2 K~y~C~-Cgk~F~~~~~l~~H~~--~Ht-----------~ekpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1           2 KLYPCQ-CGKSFTHKSQRDRHMS--MHL-----------GLRPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CCEECT-TSCEESSHHHHHHHHH--HHS-----------CCCSEECTTTSCEESSSHHHHHHHT
T ss_pred             cCCCCC-CCCeECCHHHhHHHhh--ccc-----------cccCCcCCCcCCEecCHHHHHHHHh
Confidence            356796 9999999999998864  332           2235679999999999999999985

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0034  Score=40.63  Aligned_cols=48  Identities=19%  Similarity=0.459  Sum_probs=39.6

Q ss_pred             CC-CCCCcccCCCHHHHHHHhcCCchHHHHHHhHhcCCccccccccccCCcccccccccCccCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLKGRKHKAKLQELKLDGNSLVKMSLVKVGEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l~~~~~~~~~p~~~~~~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      .| |+ |+..|+....|+.|..  .|-                     +..++.|..|+..|+....|..|++
T Consensus         3 ~y~C~-Cgk~F~~~~~l~~H~~--~Ht---------------------~ekpy~C~~C~k~F~~~~~L~~H~r   51 (53)
T d2csha1           3 LYPCQ-CGKSFTHKSQRDRHMS--MHL---------------------GLRPYGCGVCGKKFKMKHHLVGHMK   51 (53)
T ss_dssp             CEECT-TSCEESSHHHHHHHHH--HHS---------------------CCCSEECTTTSCEESSSHHHHHHHT
T ss_pred             CCCCC-CCCeECCHHHhHHHhh--ccc---------------------cccCCcCCCcCCEecCHHHHHHHHh
Confidence            45 97 9999999999999953  443                     2346789999999999999999975

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.51  E-value=0.013  Score=35.26  Aligned_cols=21  Identities=24%  Similarity=0.572  Sum_probs=19.4

Q ss_pred             cccCCccccccCCHHHHHHhh
Q 047603          211 QKWCKLCDVWCPNGDAFKMHL  231 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL  231 (259)
                      ..||..|++.|++...|..|-
T Consensus         8 ~rYC~~CDI~Fn~~~T~~aHK   28 (36)
T d1fu9a_           8 KKYCSTCDISFNYVKTYLAHK   28 (36)
T ss_dssp             CSEETTTTEECSSHHHHHHHH
T ss_pred             hhHHhhCCceehhHHHHHHHH
Confidence            578999999999999999984

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.08  E-value=0.023  Score=34.09  Aligned_cols=21  Identities=24%  Similarity=0.597  Sum_probs=19.2

Q ss_pred             CCCCCCCCcccCCCHHHHHHH
Q 047603          118 DSNFCSICHVPCSSAFNYNQH  138 (259)
Q Consensus       118 ~~~~C~lC~V~~tSe~~l~~H  138 (259)
                      ...||..|+++|++-..+..|
T Consensus         7 ~~rYC~~CDI~Fn~~~T~~aH   27 (36)
T d1fu9a_           7 MKKYCSTCDISFNYVKTYLAH   27 (36)
T ss_dssp             CCSEETTTTEECSSHHHHHHH
T ss_pred             hhhHHhhCCceehhHHHHHHH
Confidence            348999999999999999998

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.014  Score=33.20  Aligned_cols=27  Identities=19%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             ccCCccccccCCHHHHHHhhcchHHHH
Q 047603          212 KWCKLCDVWCPNGDAFKMHLDGKNHIL  238 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~GkKH~~  238 (259)
                      |.|..||..|.....+..||+++-|.+
T Consensus         2 y~C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           2 YHCTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             EECSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cccceeeeeEeeccchhHhhhhhhhcc
Confidence            679999999999999999999998753

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.018  Score=36.83  Aligned_cols=32  Identities=25%  Similarity=0.557  Sum_probs=29.2

Q ss_pred             CCCCCCcccCCCHHHHHHHhcCCchHHHHHHh
Q 047603          120 NFCSICHVPCSSAFNYNQHLKGRKHKAKLQEL  151 (259)
Q Consensus       120 ~~C~lC~V~~tSe~~l~~Hl~GKKHkkk~~~l  151 (259)
                      .-|.+|+|..++....++|+..+.|..+++.-
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~   38 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRET   38 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHHH
Confidence            34999999999999999999999999999854

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.34  E-value=0.024  Score=36.23  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=29.3

Q ss_pred             ccCCccccccCCHHHHHHhhcchHHHHHHHHH
Q 047603          212 KWCKLCDVWCPNGDAFKMHLDGKNHILRLYEI  243 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~GkKH~~~lk~~  243 (259)
                      --|.+|+|..++....+.|+-.+.|..+|+..
T Consensus         7 ~eC~lC~vKYs~~~SvrdHiFskqHI~~Vk~~   38 (48)
T d2yrka1           7 PECTLCGVKYSARLSIRDHIFSKQHISKVRET   38 (48)
T ss_dssp             SCCTTTTCCCCSSSCHHHHHTSHHHHHHHHHT
T ss_pred             ccCcccceeeeeecchHhhhhhHHHHHHHHHH
Confidence            34999999999999999999999999999764

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.73  E-value=0.018  Score=32.65  Aligned_cols=25  Identities=24%  Similarity=0.626  Sum_probs=23.7

Q ss_pred             CCCCcccCCCHHHHHHHhcCCchHH
Q 047603          122 CSICHVPCSSAFNYNQHLKGRKHKA  146 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~GKKHkk  146 (259)
                      |.-|+.+|-..-.|..|+.+|.|.+
T Consensus         4 C~~CnF~FKTKGNLTKHmkSKaH~k   28 (29)
T d1bboa2           4 CTYCNFSFKTKGNLTKHMKSKAHSK   28 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHHSSSSCC
T ss_pred             cceeeeeEeeccchhHhhhhhhhcc
Confidence            9999999999999999999999964

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.03  E-value=0.047  Score=32.66  Aligned_cols=22  Identities=18%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|++|+..|+....|..|++
T Consensus         7 Py~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           7 PFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CEECSSSCCEESSHHHHHHHHG
T ss_pred             cccCCCCCCcccChHHHHHHcc
Confidence            5669999999999999999985

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.29  E-value=0.1  Score=31.06  Aligned_cols=25  Identities=28%  Similarity=0.628  Sum_probs=22.0

Q ss_pred             CCcccccccccCccCCHHHHHHHhc
Q 047603          167 GEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       167 ~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      +..++.|.+|+..|+....|..|++
T Consensus         4 GekPy~C~~C~k~F~~~~~L~~H~r   28 (35)
T d1srka_           4 GKRPFVCRICLSAFTTKANCARHLK   28 (35)
T ss_dssp             CCSCEECSSSCCEESSHHHHHHHHG
T ss_pred             CCccccCCCCCCcccChHHHHHHcc
Confidence            4567889999999999999999975

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=89.24  E-value=0.1  Score=29.73  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|+....|..|++
T Consensus         2 p~~C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           2 SFVCEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CBCCTTTCCCBSCHHHHHHHHH
T ss_pred             cCCCCCCCCCCCCchHcccccC
Confidence            4669999999999999999985

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=88.90  E-value=0.14  Score=29.13  Aligned_cols=19  Identities=16%  Similarity=0.571  Sum_probs=18.0

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|+....|..|..
T Consensus         5 C~~C~k~F~~~~~L~~H~r   23 (29)
T d2adra1           5 CEVCTRAFARQEHLKRHYR   23 (29)
T ss_dssp             CTTTCCCBSCHHHHHHHHH
T ss_pred             CCCCCCCCCCchHcccccC
Confidence            9999999999999999974

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.62  E-value=0.16  Score=30.35  Aligned_cols=22  Identities=23%  Similarity=0.372  Sum_probs=20.2

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|..|+..|.....|..|++
T Consensus        11 Py~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_          11 PFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             SBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CeEeCCCCCEecCHHHHHHHHh
Confidence            5679999999999999999984

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.54  E-value=0.11  Score=29.44  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=19.7

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.....|..|++
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCC
Confidence            4669999999999999999985

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.10  E-value=0.12  Score=30.91  Aligned_cols=22  Identities=23%  Similarity=0.471  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|.|++|+..|+....|..|+.
T Consensus         8 P~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           8 PYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             SEECTTTCCEESCHHHHHHHHH
T ss_pred             CEeCCCCcccccchHHHHHHcc
Confidence            5669999999999999999975

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.63  E-value=0.26  Score=29.38  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=22.0

Q ss_pred             CCcccccccccCccCCHHHHHHHhc
Q 047603          167 GEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       167 ~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      +..++.|..|+..|+....|..|++
T Consensus         8 geKPy~C~~C~k~F~~~~~L~~H~r   32 (37)
T d1p7aa_           8 GIKPFQCPDCDRSFSRSDHLALHRK   32 (37)
T ss_dssp             CSSSBCCTTTCCCBSSHHHHHHHHG
T ss_pred             CccCeEeCCCCCEecCHHHHHHHHh
Confidence            3567889999999999999999975

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.50  E-value=0.18  Score=28.73  Aligned_cols=19  Identities=21%  Similarity=0.471  Sum_probs=17.9

Q ss_pred             CCCCcccCCCHHHHHHHhc
Q 047603          122 CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       122 C~lC~V~~tSe~~l~~Hl~  140 (259)
                      |.+|+..|+...+|..|..
T Consensus         5 C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           5 CPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CTTTTCCCSCSHHHHHHHH
T ss_pred             CCcCCCeecchHHhhhhcC
Confidence            9999999999999999974

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.01  E-value=0.15  Score=29.11  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|.+|+..|...+.|..|++
T Consensus         2 py~C~~C~k~F~~~s~L~~H~r   23 (29)
T d1sp1a_           2 KFACPECPKRFMRSDHLSKHIK   23 (29)
T ss_dssp             CSCCTTTTCCCSCSHHHHHHHH
T ss_pred             CEECCcCCCeecchHHhhhhcC
Confidence            4669999999999999999986

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.62  E-value=0.32  Score=28.36  Aligned_cols=21  Identities=24%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             CCCCCCCcccCCCHHHHHHHh
Q 047603          119 SNFCSICHVPCSSAFNYNQHL  139 (259)
Q Consensus       119 ~~~C~lC~V~~tSe~~l~~Hl  139 (259)
                      .+.|.-|.+.|.|.+.|..|.
T Consensus         8 rf~c~pcgirfss~stleahq   28 (36)
T d1y0jb1           8 RFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCBCTTTCCBCSCHHHHHHHT
T ss_pred             ceeccccceeecChhHHHhhh
Confidence            456999999999999999985

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.37  E-value=0.22  Score=28.13  Aligned_cols=21  Identities=29%  Similarity=0.630  Sum_probs=18.6

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |.+|+..|+....|..|..
T Consensus         3 Py~C~~C~k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           3 PFQCRICMRNFSRSDHLTTHIR   24 (28)
T ss_dssp             CEECTTTCCEESCHHHHHHHHH
T ss_pred             CccCCCCcCEecccccccccCC
Confidence            35 9999999999999999964

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.94  E-value=0.39  Score=27.98  Aligned_cols=23  Identities=13%  Similarity=0.320  Sum_probs=20.5

Q ss_pred             CcccCCccccccCCHHHHHHhhc
Q 047603          210 EQKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       210 ~~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      ..|.|.-|.+.|.|.+.++.|..
T Consensus         7 arf~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTT
T ss_pred             cceeccccceeecChhHHHhhhh
Confidence            46889999999999999999953

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.86  E-value=0.32  Score=27.30  Aligned_cols=22  Identities=18%  Similarity=0.443  Sum_probs=19.8

Q ss_pred             ccCCccccccCCHHHHHHhhcc
Q 047603          212 KWCKLCDVWCPNGDAFKMHLDG  233 (259)
Q Consensus       212 ~~C~lCnV~~~Se~~m~~HL~G  233 (259)
                      |.|+.|++.|.-.++++.|++.
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRT   23 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHH
T ss_pred             ccccccCcccCCHHHHHHHHHH
Confidence            6799999999999999999863

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.71  E-value=0.28  Score=29.12  Aligned_cols=25  Identities=28%  Similarity=0.668  Sum_probs=21.6

Q ss_pred             CCcccccccccCccCCHHHHHHHhc
Q 047603          167 GEKQTWCRLCNIGFSSEELFRLHLN  191 (259)
Q Consensus       167 ~~~~~~C~lCnv~~~S~~~l~sHl~  191 (259)
                      +..++.|..|+..|+....|..|+.
T Consensus         5 gekP~~C~~C~k~F~~~~~L~~H~~   29 (36)
T d2ct1a2           5 GEKPYECYICHARFTQSGTMKMHIL   29 (36)
T ss_dssp             CCCSEECTTTCCEESCHHHHHHHHH
T ss_pred             CCCCEeCCCCcccccchHHHHHHcc
Confidence            3457889999999999999998865

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.13  E-value=0.23  Score=29.46  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|++|+..|.....|..|++
T Consensus         8 Py~C~~C~k~F~~~~~L~~H~r   29 (36)
T d1x6ha2           8 PYACSHCDKTFRQKQLLDMHFK   29 (36)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CEECCCCCCCcCCHhHHHHhCc
Confidence            5669999999999999999984

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.88  E-value=0.29  Score=29.69  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.2

Q ss_pred             CCC-CCCCcccCCCHHHHHHHhc
Q 047603          119 SNF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       119 ~~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      +.| |+.|+..|+....|..|+.
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH
T ss_pred             CCccCCCCCCCcCChHHhhccCc
Confidence            345 9999999999999999964

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.68  E-value=0.5  Score=28.17  Aligned_cols=21  Identities=19%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             CC-CCCCcccCCCHHHHHHHhc
Q 047603          120 NF-CSICHVPCSSAFNYNQHLK  140 (259)
Q Consensus       120 ~~-C~lC~V~~tSe~~l~~Hl~  140 (259)
                      .| |..|+.+|.....|..|..
T Consensus        12 py~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          12 RYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CEecCCCCceeeCHHHHHHhCc
Confidence            45 9999999999999999975

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.82  E-value=0.28  Score=29.79  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|+.|+..|.....|..|++
T Consensus         5 py~C~~Cgk~F~~~~~L~~H~r   26 (39)
T d2epsa1           5 PYICQSCGKGFSRPDHLNGHIK   26 (39)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             CccCCCCCCCcCChHHhhccCc
Confidence            4669999999999999999975

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.32  E-value=0.48  Score=28.23  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=20.1

Q ss_pred             cccCCccccccCCHHHHHHhhc
Q 047603          211 QKWCKLCDVWCPNGDAFKMHLD  232 (259)
Q Consensus       211 ~~~C~lCnV~~~Se~~m~~HL~  232 (259)
                      .|-|+.|+..|.....|..|++
T Consensus        12 py~C~~CgK~F~~~s~L~~H~r   33 (38)
T d2cota2          12 RYKCDECGKSFSHSSDLSKHRR   33 (38)
T ss_dssp             SSBCSSSCCBCSCHHHHHHHHT
T ss_pred             CEecCCCCceeeCHHHHHHhCc
Confidence            5669999999999999999986