Citrus Sinensis ID: 047609

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690------

MTNGEEELSSIHKAEEEEEEEEAAAAEEESEGISFSFHCLTGGGGGRGSGGGGGGQEQWDCGKSGTLNFQRVGSIVRDIGDPCLSHSHIKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESGEPSVDNTNQSKSFYDSSKNCTDISYACQKESSIDSADLVSVRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYVTESYIDFPPLPITDLFEKNGKYEKNNGVCEEKPSTRHKLRLEDDRMHSFQIANNADLIMESNGSPSNSISHHMKSEIEMASPGSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKSASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLLNFYDTIFPSANY

ccccHHHHHHHHHcccccccccEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHHHHccccccccccHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccHHHHHHccHHHHHcccccccccccccccHHHHccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccc

ccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccccccHHEccccccccccccccccccccccccccHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccEEcccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccHHHccccccccccccccHHHHHHHHccccHHHHHHHHHHHccccHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHccHEEEEccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHcccccEHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHcHcccccccccHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHccHccccccccc

MTNGEEELSSIHKAEEEEEEEEAAAAEeesegisfsfhcltgggggrgsggggggqeqwdcgksgtlnfqrvgsivrdigdpclshshikvsrilkpekwqacfdsdgkvsgfHKALKLIVlggvdpsirpEVWEFLlgcyapgstaEYRKQLRIARRERYEDLIKQCQVMhssigtgsLAYVVGSKVmdmrtsskddgpreakvesgepsvdntnqsksfydssknctdisyacqkessidsadlvsvresadsaaydsscfisasgpcncsslkrgreargspyvtesyidfpplpitdlfekngkyeknngvceekpstrhklrleddrmhsfqiannadlimesngspsnsishhmkseiemaspgshepelwsnsqdfKTEITdrlrisdapdvplntttspgeavnEERIVILNSMRMTKNLARMSDILAVYAwvdpatgycqgmsdllsPFVVLFEDNADAFWCFEMLLRRMRnnfqmegptGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESvviregstensggdlkgglqpkngniecsvsaddgiksasahpfcgltrtfwsrnghsqnFTVVSSTwnvneelpVFCVAAILIMNRHKVMKETRSIDDMIKAGVLLnfydtifpsany

mtngeeelssihkaeeeEEEEEAAAAEEESEGISFSFHCLTGGGGGRGSGGGGGGQEQWDCGKSGTLNFQRVGSIVRDIGDPCLSHSHIKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGcyapgstaEYRKQLRIARRERYEDLIKQCQvmhssigtgSLAYVVGSKVMDMRtsskddgpreakvesgepsvdntnqskSFYDSSKNCTDISYACQKESSIDSADLVSVRESADSAAYDsscfisasgpcncsSLKRGREARGSPyvtesyidfpplPITDLFEKNGKYEknngvceekpstrHKLRLEDDRMHSFQIANNADLIMESNGSPSNSISHHMKSEIEMASPGSHEPELWSNSQDFKTEITDRlrisdapdvplntttspgeavneerIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVviregstensggdlkgglqpkNGNIECSVSADDGIKSASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLLNFYDTIFPSANY

MTNGeeelssihkaeeeeeeeeaaaaeeeseGISFSFHCLTgggggrgsggggggQEQWDCGKSGTLNFQRVGSIVRDIGDPCLSHSHIKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESGEPSVDNTNQSKSFYDSSKNCTDISYACQKESSIDSADLVSVRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYVTESYIDFPPLPITDLFEKNGKYEKNNGVCEEKPSTRHKLRLEDDRMHSFQIANNADLIMESNGSPSNSISHHMKSEIEMASPGSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKSASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLLNFYDTIFPSANY

************************************************************CGKSGTLNFQRVGSIVRDIGDPCLSHSHIKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSK*********************************************Y***************************SCFISASGPCNC************PYVTESYIDFPPLPITDLFEK************************************************************************************************************ERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVI***********************************ASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLLNFYDTIF*****

*************************AEEESEGISFSFHCLTGGGGGRGSGGGGGGQEQWDCGKSGTLNFQRVGSIVR********************EKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSKV*************************NTNQSKSFYDSS************************RESADSAAYDSSCFISASG*****************************************************************************************************************DFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGS********************************************************************VFCVAAILIMNRHKVMKETRSIDDMIKAGVLLNFYDTIFP****

*******************************GISFSFHCLTGGG*************QWDCGKSGTLNFQRVGSIVRDIGDPCLSHSHIKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSKVMDM*************************QSKSFYDSSKNCTDISYACQKESSIDSADLVSVRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYVTESYIDFPPLPITDLFEKNGKYEKNNGVCEEKPSTRHKLRLEDDRMHSFQIANNADLIMESNGSPSNSISHHMKSEI************WSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKSASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLLNFYDTIFPSANY

*******************************GISFSFHCLTG*********************SGTLNFQRVGSIVRDIGDPCLSHSHIKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESG***************************************************************************************************************************************L*******PSNSISHHMKSEIEMASPGSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGSTENSGGDLKGGLQPK********************PFC*L*RT*********NFTVVSST*NVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLLNFYDTIFPSAN*

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MTNGEEELxxxxxxxxxxxxxxxxxxxxxxxGISFSFHCLTGGGGGRGSGGGGGGQEQWDCGKSGTLNFQRVGSIVRDIGDPCLSHSHIKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESGEPSVDNTNQSKSFYDSSKNCTDISYACQKESSIDSADLVSVRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYVTESYIDFPPLPITDLFEKNGKYEKNNGVCEEKPSTRHKLRLEDDRMHSFQIANNADLIMESNGSPSNSISHHMKSEIEMASPGSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKSASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLLNFYDTIFPSANY

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		696	2.2.26 [Sep-21-2011]
P09379		730	GTPase-activating protein	yes	no	0.179	0.171	0.401	6e-21
Q9CXF4		671	TBC1 domain family member	yes	no	0.175	0.181	0.422	9e-21
Q8TC07		691	TBC1 domain family member	yes	no	0.175	0.176	0.422	1e-20
Q9UUH7		743	GTPase-activating protein	yes	no	0.221	0.207	0.358	1e-20
Q6BU76		757	GTPase-activating protein	yes	no	0.206	0.190	0.358	4e-20
Q6FWI1		745	GTPase-activating protein	yes	no	0.181	0.169	0.362	1e-19
P48365		746	GTPase-activating protein	yes	no	0.214	0.199	0.342	1e-17
A1A5B6		742	TBC1 domain family member	no	no	0.178	0.167	0.352	1e-17
Q3MII6		688	TBC1 domain family member	no	no	0.178	0.180	0.352	1e-17
Q8BPQ7		1093	Small G protein signaling	no	no	0.179	0.114	0.328	2e-17

>sp\|P09379\|GYP7_YARLI GTPase-activating protein GYP7 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=GYP7 PE=3 SV=2	Back alignment and function desciption

 Score =  103 bits (256), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 2/127 (1%)

Query: 427 NLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQME 486
           +L ++ D+L  Y   +   GY QGMSDLLSP  V+ +D+  AFW F   + RM  N+ + 
Sbjct: 495 HLIQLRDMLITYNQHNKNLGYVQGMSDLLSPLYVVLQDDTLAFWAFSAFMERMERNY-LR 553

Query: 487 GPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWE 546
             +G+  QL  L H+++     +YKHL    + +L F FRMLLV F+REL +++ L +WE
Sbjct: 554 DQSGMRNQLLCLDHLVQFMLPSLYKHLEKTESTNLFFFFRMLLVWFKRELLWDDVLRLWE 613

Query: 547 MMWAADY 553
           ++W  DY
Sbjct: 614 VLW-TDY 619

Most effectively accelerate the intrinsic GTPase activity of YPT7. It is also active, but to a lesser extent, on YPT31, YPT32 and YPT1. YPT6 and SEC4.
Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp\|Q9CXF4\|TBC15_MOUSE TBC1 domain family member 15 OS=Mus musculus GN=Tbc1d15 PE=1 SV=1	Back alignment and function description

>sp\|Q8TC07\|TBC15_HUMAN TBC1 domain family member 15 OS=Homo sapiens GN=TBC1D15 PE=1 SV=2	Back alignment and function description

>sp\|Q9UUH7\|GYP7_SCHPO GTPase-activating protein gyp7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gyp7 PE=3 SV=1	Back alignment and function description

>sp\|Q6BU76\|GYP7_DEBHA GTPase-activating protein GYP7 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=GYP7 PE=3 SV=2	Back alignment and function description

>sp\|Q6FWI1\|GYP7_CANGA GTPase-activating protein GYP7 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=GYP7 PE=3 SV=1	Back alignment and function description

>sp\|P48365\|GYP7_YEAST GTPase-activating protein GYP7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GYP7 PE=1 SV=1	Back alignment and function description

>sp\|A1A5B6\|TBC25_MOUSE TBC1 domain family member 25 OS=Mus musculus GN=Tbc1d25 PE=1 SV=1	Back alignment and function description

>sp\|Q3MII6\|TBC25_HUMAN TBC1 domain family member 25 OS=Homo sapiens GN=TBC1D25 PE=1 SV=2	Back alignment and function description

>sp\|Q8BPQ7\|SGSM1_MOUSE Small G protein signaling modulator 1 OS=Mus musculus GN=Sgsm1 PE=2 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		696
255586955		662	conserved hypothetical protein [Ricinus	0.903	0.950	0.663	0.0
359495933		692	PREDICTED: uncharacterized protein LOC10	0.883	0.888	0.606	0.0
449484877		879	PREDICTED: uncharacterized LOC101221961	0.890	0.705	0.607	0.0
449468872		686	PREDICTED: uncharacterized protein LOC10	0.890	0.903	0.607	0.0
147794780		774	hypothetical protein VITISV_034214 [Viti	0.876	0.788	0.565	0.0
359495923		761	PREDICTED: uncharacterized protein LOC10	0.747	0.683	0.667	0.0
356557353		699	PREDICTED: uncharacterized protein LOC10	0.886	0.882	0.566	0.0
297828049		745	RabGAP/TBC domain-containing protein [Ar	0.864	0.808	0.532	0.0
334184903		741	RAB GTPase activator protein [Arabidopsi	0.864	0.812	0.532	0.0
296081348		609	unnamed protein product [Vitis vinifera]	0.780	0.891	0.551	0.0

>gi\|255586955\|ref\|XP_002534076.1\| conserved hypothetical protein [Ricinus communis] gi\|223525888\|gb\|EEF28308.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  866 bits (2237), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/648 (66%), Positives = 502/648 (77%), Gaps = 19/648 (2%)

Query: 52  GGGGQEQWDCGKSGTLNFQRVGSIVRDIGDPCLSHSHIKVSRILKPEKWQACFDSDGKVS 111
           GGG ++QW CGK G +N QRVGSIVRDIG+PCL+ S IKVSR+LKP+KWQA FDSDGKVS
Sbjct: 4   GGGEEKQWSCGKPGAVNLQRVGSIVRDIGEPCLAQSPIKVSRMLKPDKWQATFDSDGKVS 63

Query: 112 GFHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVM 171
           GF KALK IVLGGVDP+IR EVWEFLLGCYA GSTAEYR QLR ARRERY+DLI+QCQ+M
Sbjct: 64  GFQKALKSIVLGGVDPAIRSEVWEFLLGCYALGSTAEYRTQLRTARRERYKDLIQQCQMM 123

Query: 172 HSSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESGEPSVDNTNQSKSFYDSSKNCTDI 231
           HSS+GTG+LAYVVGSKVMDMRTSSKDD  +EAKVES + S D TN+ + + D + NCT+ 
Sbjct: 124 HSSVGTGALAYVVGSKVMDMRTSSKDDSKQEAKVESRQASTDTTNKLEKYGDQNNNCTET 183

Query: 232 SYACQKESSIDSADLVSVRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYVTESY 291
            +AC++ESS DS +L SVR S DSAAYDSSC +  SG  N  S +RG EA GS YV  SY
Sbjct: 184 LHACERESSSDSGELASVRGSTDSAAYDSSCLLHTSGLYNSGSPERGVEAHGSQYVAGSY 243

Query: 292 IDFPPLPITDLFEKNGKYEKNNGVCEEKPSTRHKLRLEDDRMHSFQIANNADLIMESNGS 351
            DFP LP+TDLF++  +  +   V E +PSTR KLR +DDRMHSFQI+NN DLI+ESNGS
Sbjct: 244 FDFPSLPVTDLFDREREDTEEYSVHEIEPSTRQKLRFQDDRMHSFQISNNVDLIIESNGS 303

Query: 352 PSNSISHHMKSEIEMASPGSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAV 411
           PSN++SH   SEIE+           S +QD+K EI +RLRISDAP+ PL   TS G   
Sbjct: 304 PSNNVSHENNSEIEIVHDHHDHEHAQSTNQDYKKEIVNRLRISDAPETPLLKITSQGGTT 363

Query: 412 NEERI---------VILNSMRM---------TKNLARMSDILAVYAWVDPATGYCQGMSD 453
            E+R+         ++++ +R           KNLARMSDILAVYAWVDPATGYCQGMSD
Sbjct: 364 GEDRVTEWLWTLHRIVVDVVRTDSHLEFYEDKKNLARMSDILAVYAWVDPATGYCQGMSD 423

Query: 454 LLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHL 513
           LLSPFVVL+EDNADAFWCFEMLLRRMR NFQMEGPTGVMKQL+ LWHILELTDREM+ HL
Sbjct: 424 LLSPFVVLYEDNADAFWCFEMLLRRMRENFQMEGPTGVMKQLQALWHILELTDREMFTHL 483

Query: 514 SNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQL 573
           S IGAESLHFAFRML+VLFRRELSF+EAL MWEMMWAAD+DE  A  LEE CLE LV+ L
Sbjct: 484 SRIGAESLHFAFRMLMVLFRRELSFDEALQMWEMMWAADFDETLAYNLEENCLEALVLPL 543

Query: 574 SRES-VVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKSASAHPFCGLTRTFWSRN 632
            R+S   +RE +TEN  G    G   K+GN+E   S +  +KSASA+PFCGLTR+FWSR+
Sbjct: 544 PRDSGGEMREETTENGNGSSNDGSLSKHGNVEHPASENVAMKSASAYPFCGLTRSFWSRS 603

Query: 633 GHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKA 680
              Q  +VVSST N ++ELPVFCVAAILIMNR K+++ETRSIDDMIKA
Sbjct: 604 EPIQISSVVSSTKNGDDELPVFCVAAILIMNRQKIIRETRSIDDMIKA 651

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359495933\|ref\|XP_002272390.2\| PREDICTED: uncharacterized protein LOC100266372 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449484877\|ref\|XP_004157005.1\| PREDICTED: uncharacterized LOC101221961 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449468872\|ref\|XP_004152145.1\| PREDICTED: uncharacterized protein LOC101221961 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|147794780\|emb\|CAN73504.1\| hypothetical protein VITISV_034214 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359495923\|ref\|XP_002271996.2\| PREDICTED: uncharacterized protein LOC100262814 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356557353\|ref\|XP_003546981.1\| PREDICTED: uncharacterized protein LOC100804956 [Glycine max]	Back alignment and taxonomy information

>gi\|297828049\|ref\|XP_002881907.1\| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297327746\|gb\|EFH58166.1\| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|334184903\|ref\|NP_001189743.1\| RAB GTPase activator protein [Arabidopsis thaliana] gi\|330255187\|gb\|AEC10281.1\| RAB GTPase activator protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|296081348\|emb\|CBI17694.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		696
TAIR\|locus:2058228		745	AT2G43490 [Arabidopsis thalian	0.718	0.671	0.552	7.8e-170
TAIR\|locus:2097573		720	AT3G59570 [Arabidopsis thalian	0.860	0.831	0.530	3.6e-153
TAIR\|locus:2160145		432	AT5G54780 [Arabidopsis thalian	0.277	0.446	0.431	3e-60
TAIR\|locus:2136442		436	AT4G27100 [Arabidopsis thalian	0.324	0.518	0.393	1.1e-59
TAIR\|locus:2121353		424	AT4G28550 [Arabidopsis thalian	0.195	0.320	0.482	9.1e-54
TAIR\|locus:2038922		425	AT2G20440 [Arabidopsis thalian	0.231	0.378	0.429	7.3e-53
TAIR\|locus:2165710		549	AT5G41940 [Arabidopsis thalian	0.285	0.362	0.382	2.9e-45
TAIR\|locus:2168591		577	AT5G53570 [Arabidopsis thalian	0.186	0.225	0.469	8.9e-42
TAIR\|locus:2082901		539	AT3G49350 [Arabidopsis thalian	0.173	0.224	0.434	3.2e-41
TAIR\|locus:2152901		528	AT5G24390 [Arabidopsis thalian	0.211	0.278	0.395	5.7e-39

TAIR\|locus:2058228 AT2G43490 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1424 (506.3 bits), Expect = 7.8e-170, Sum P(2) = 7.8e-170
 Identities = 301/545 (55%), Positives = 366/545 (67%)

Query:    57 EQWDCGKSGTLNFQRVGSIVRDIGDPCLSHSHIKV----SRILKPEKWQACFDSDGKVSG 112
             +QW CGK+G ++ Q+VGS+VRD+ +PCLS S I+V     ++LKPEKWQA FDSDG+VSG
Sbjct:     8 KQWSCGKAGVVSLQKVGSLVRDLSEPCLSQSRIQVVITIGKMLKPEKWQASFDSDGRVSG 67

Query:   113 FHKALKLIVLGGVDPSIRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMH 172
             F KALKLI+LGG+DPSIR EVWEFLLGCYA  ST+EYR QLR+ARR+RY DL+KQCQ MH
Sbjct:    68 FQKALKLIILGGIDPSIRAEVWEFLLGCYALSSTSEYRNQLRVARRKRYNDLLKQCQTMH 127

Query:   173 SSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESGEPSV-----DNTNQSKSFYDSSKN 227
             SS+GTGSLAYVVGSKVMDMR S +D+  + A  +           DN N      D S N
Sbjct:   128 SSVGTGSLAYVVGSKVMDMRKSYRDEAVKVATTDENREDAFIDNNDNANTENHHSDWSNN 187

Query:   228 CTDISYACQKESSIDSADLVSVRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYV 287
              TD S+  ++ SS +S DLVS RES +S  Y++S F+SAS P   +S          P  
Sbjct:   188 GTDTSHLHRRGSSSESVDLVSGRESPESVVYNTSSFVSASSPYGYAS----------P-- 235

Query:   288 TESYIDFPPLPITDLFEKNGKYEKNNGVCEEKPSTRHKLRLEDDRMHSFQIANNADLIME 347
              + Y DFP LP+TDLF +N   +      +E  S + +LR ED+ MH+F+I  NADLI E
Sbjct:   236 -DGYFDFPSLPVTDLFGRNSLDKIEVSTPDEDASLKSELRSEDEGMHNFRIDKNADLIRE 294

Query:   348 SNGS-PSNSISHHMKSEIEMASPGSHEPELWSNSQDFK-TEITDRLRISDAPDVPLNTTT 405
                S P   + H      +   P S+      N++      I+D   ++   D P     
Sbjct:   295 QRRSTPEIKVMHS-----DSVGPSSYTGR---NAEIVDGLRISDVPEMASVKDTPSRVGN 346

Query:   406 SPGEAVNE-----ERIVI--------LNSMRMTKNLARMSDILAVYAWVDPATGYCQGMS 452
                + V+E      RIV+        L       NL RMSDILAVYAWVDPATGYCQGMS
Sbjct:   347 VTEDRVSEWLWTLHRIVVDVVRTDSHLEFYEDPGNLGRMSDILAVYAWVDPATGYCQGMS 406

Query:   453 DLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKH 512
             DL+SPFVVLFEDNADAFWCFEML+RR R NFQMEGPTGVM QL+ LWHIL++TD++++ H
Sbjct:   407 DLVSPFVVLFEDNADAFWCFEMLIRRTRANFQMEGPTGVMDQLQSLWHILQITDKDIFSH 466

Query:   513 LSNIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQ 572
             LS IGAESLHFAFRMLLVLFRRELSFNEAL MWEMMWAADYDE+   TLE  CLE LV+Q
Sbjct:   467 LSRIGAESLHFAFRMLLVLFRRELSFNEALRMWEMMWAADYDESVTETLENDCLEPLVIQ 526

Query:   573 LSRES 577
             L R+S
Sbjct:   527 LPRKS 531

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

TAIR\|locus:2097573 AT3G59570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2160145 AT5G54780 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2136442 AT4G27100 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2121353 AT4G28550 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2038922 AT2G20440 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2165710 AT5G41940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2168591 AT5G53570 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2082901 AT3G49350 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2152901 AT5G24390 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		696
smart00164		216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	9e-33
pfam00566		206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	3e-25
COG5210		496	COG5210, COG5210, GTPase-activating protein [Gener	5e-24

>gnl\|CDD\|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

 Score =  125 bits (316), Expect = 9e-33
 Identities = 44/129 (34%), Positives = 70/129 (54%)

Query: 426 KNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQM 485
                +  +L  YA  +P  GYCQGM+ L +P +++ ED  DAFWC   L+ R   NF +
Sbjct: 70  PGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLMERYGPNFYL 129

Query: 486 EGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMW 545
              +G+   L +L  +++  D ++YKHL ++G     +A R  L LF REL     L +W
Sbjct: 130 PDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARELPLEIVLRIW 189

Query: 546 EMMWAADYD 554
           ++++A   D
Sbjct: 190 DVLFAEGSD 198

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl\|CDD\|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	Back alignment and domain information

>gnl\|CDD\|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		696
KOG2197		488	consensus Ypt/Rab-specific GTPase-activating prote	100.0
KOG2224		781	consensus Uncharacterized conserved protein, conta	100.0
KOG1092		484	consensus Ypt/Rab-specific GTPase-activating prote	100.0
KOG4567		370	consensus GTPase-activating protein [General funct	100.0
smart00164		199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	100.0
KOG2058		436	consensus Ypt/Rab GTPase activating protein [Intra	100.0
COG5210		496	GTPase-activating protein [General function predic	99.97
PF00566		214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	99.95
KOG2223		586	consensus Uncharacterized conserved protein, conta	99.92
KOG2222		848	consensus Uncharacterized conserved protein, conta	99.83
KOG1091		625	consensus Ypt/Rab-specific GTPase-activating prote	99.83
KOG4347		671	consensus GTPase-activating protein VRP [General f	99.78
KOG4436		948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.76
KOG1093		725	consensus Predicted protein kinase (contains TBC a	99.74
KOG1102		397	consensus Rab6 GTPase activator GAPCenA and relate	99.71
KOG2595		395	consensus Predicted GTPase activator protein [Sign	99.66
KOG2221		267	consensus PDZ-domain interacting protein EPI64, co	99.36
KOG3636		669	consensus Uncharacterized conserved protein, conta	99.2
KOG1648		813	consensus Uncharacterized conserved protein, conta	98.81
KOG4436		948	consensus Predicted GTPase activator NB4S/EVI5 (co	98.74
KOG2197		488	consensus Ypt/Rab-specific GTPase-activating prote	98.05
KOG2801		559	consensus Probable Rab-GAPs [Intracellular traffic	97.02
KOG2224		781	consensus Uncharacterized conserved protein, conta	94.32
PF14961		1296	BROMI: Broad-minded protein	91.53

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

Probab=100.00  E-value=5.8e-48  Score=430.14  Aligned_cols=460  Identities=35%  Similarity=0.528  Sum_probs=324.9

Q ss_pred             CCCcccccccCccCcchhhhcccccccCCCCCCCCC----CCcCCCCCHHHHhhhhCCCCCccCHHHHHHHHHhCCCCCC
Q 047609           53 GGGQEQWDCGKSGTLNFQRVGSIVRDIGDPCLSHSH----IKVSRILKPEKWQACFDSDGKVSGFHKALKLIVLGGVDPS  128 (696)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~----~~~~~~Ls~~~W~~~fd~~Grl~~~~~~~k~I~~GGvdps  128 (696)
                      |+..++|.+.+.+...+...+..|.+++++|..+++    ++++++|++++|++.|+++|++.+..+++++|+.|||||+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~ps   81 (488)
T KOG2197|consen    2 GSESKQWDSLKSLLLSLDSSSFTVVDSREPCLSQSRIWVLIKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPS   81 (488)
T ss_pred             CccchhhhhcccceEEEeeccCccccccccccccCCcceeeccccccchhhhhhccCCCccccchhhhheeeecCCCCCc
Confidence            567899999999999999999999999999988866    8899999999999999999999989999999999999999


Q ss_pred             chhhhHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCcceeeccccccccccCCCCCCCccccccCC
Q 047609          129 IRPEVWEFLLGCYAPGSTAEYRKQLRIARRERYEDLIKQCQVMHSSIGTGSLAYVVGSKVMDMRTSSKDDGPREAKVESG  208 (696)
Q Consensus       129 iR~EVWpFLLG~Y~~~ST~eER~~l~~~~r~eY~~lk~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (696)
                      ||+|||+||||||++++|++||..+|..+|.+|..|+.+|+.|++.++++ +.+++++.+++.+.++-.           
T Consensus        82 ir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c~~~~~~~~~~-~~~~~~~~~~~~~~p~~~-----------  149 (488)
T KOG2197|consen   82 IRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVCQMMKSTVGNG-LSYVVSSVVSDNRSPSLT-----------  149 (488)
T ss_pred             ccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHcchhhhhhccc-cceeeeEEeecCCCCcch-----------
Confidence            99999999999999999999999999999999999999999999999987 566777777776654300           


Q ss_pred             CCccCCCCcCccccC-CCCCCCcchhhhccccccccccccccccccccccccccccccCCCCCCCCCCCcCccCCCCCcc
Q 047609          209 EPSVDNTNQSKSFYD-SSKNCTDISYACQKESSIDSADLVSVRESADSAAYDSSCFISASGPCNCSSLKRGREARGSPYV  287 (696)
Q Consensus       209 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (696)
                               ++++.. +............++   .+..++.               .+       ..+         ..+
T Consensus       150 ---------~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~---------------~~-------~l~---------~~~  186 (488)
T KOG2197|consen  150 ---------LEEYNSNAMREGRLDESVHQRE---RIFSGGL---------------SK-------SLR---------AEV  186 (488)
T ss_pred             ---------hhhhhhhhhhccccccchhhhh---eeccccc---------------cc-------chh---------hhh
Confidence                     000000 000000000000000   0000000               00       000         000


Q ss_pred             cccccCCCCC-CccccccccccccCCCCcccCCcchhhhhccccccccccccccchhhhhhcCCCCCCcccccccchhhh
Q 047609          288 TESYIDFPPL-PITDLFEKNGKYEKNNGVCEEKPSTRHKLRLEDDRMHSFQIANNADLIMESNGSPSNSISHHMKSEIEM  366 (696)
Q Consensus       288 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~s~~e~  366 (696)
                      .....+|.+= ..++...-   ..+. .++......+|.                    ..+...+.             
T Consensus       187 ~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~k~qW~--------------------~~~~~~~~-------------  229 (488)
T KOG2197|consen  187 WKFLLDYSPWDSTTRERVS---LRKL-TDEYFRLKLQWS--------------------STSPEQSP-------------  229 (488)
T ss_pred             hhhhhcccCcccccccccc---cccc-cccHhhhhhhhe--------------------eccccccc-------------
Confidence            0000000000 00000000   0000 112222333332                    22221110             


Q ss_pred             cCCCCCccccccCCccchHHHhhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchh--HHHHHHHHHHhhhcCCC
Q 047609          367 ASPGSHEPELWSNSQDFKTEITDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKN--LARMSDILAVYAWVDPA  444 (696)
Q Consensus       367 ~~~~~~~~~~~s~~~~~~~eild~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~--~~~L~rIL~aYA~~nPd  444 (696)
                       +..+            -++-...|.+ |              |.++||.  ++||....+  ..+|.+||.+|+.+|++
T Consensus       230 -~~~~------------~~~~~~~i~~-d--------------v~rtDr~--~~~~~~~~n~~~~~l~~iL~ty~~~~~d  279 (488)
T KOG2197|consen  230 -ESEG------------YLERKSRIEK-D--------------VGRTDRS--LEFYEGEENPHLARLVDILLTYAVYDFD  279 (488)
T ss_pred             -cccc------------hhhhhhhhhh-h--------------ccccchh--hhhhhcccccCHHHHHHHHhhcccccCc
Confidence             0000            0111222333 4              4455665  788876655  99999999999999999


Q ss_pred             CcccCChhHHHHHHHHhhhchhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCcchhh
Q 047609          445 TGYCQGMSDLLSPFVVLFEDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFA  524 (696)
Q Consensus       445 IGYcQGMNdIaapLLlv~~dE~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~~lFa  524 (696)
                      +||||||+++++|++.++.+|.+|||||+.+|++++++|..+ ..|+..++..+..+++..||.||+||+.++....+|+
T Consensus       280 ~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~~~nF~~d-~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~  358 (488)
T KOG2197|consen  280 LGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRLRHNFRID-QSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFC  358 (488)
T ss_pred             cccccCchhhcCcceeeecCchHHHHHHHHHHHHHhhcCccc-cccHHHHhhhhhhhccccCHHHHhhccccCCCcccee
Confidence            999999999999999999999999999999999999999765 6799999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCChhHHHHHhhHHHHhccchhHHHHHHHHHHHHHHHHhhcchhhhhhhhhccCCCCCCCCCCCCCCCCc
Q 047609          525 FRMLLVLFRRELSFNEALCMWEMMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGSTENSGGDLKGGLQPKNGNIE  604 (696)
Q Consensus       525 ~rWfltLFsreLp~e~vlRLWDv~faeG~~~~~~~~L~yvclA~Lll~~~~~L~d~~E~m~~Lq~~p~~~~~k~~~~d~e  604 (696)
                      ++|+++.|.|+|.++++++||+++|+.-++.   .|.+|++.|+|-. -++.+                           
T Consensus       359 fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~---~f~~~~~~~~l~~-~~~~l---------------------------  407 (488)
T KOG2197|consen  359 FRMLLVPFRREFEFEDSLRLWEVLWTDLPSP---HFHLYVAPAILNK-DPQTL---------------------------  407 (488)
T ss_pred             eehhhcccccccccccHHHHHHHHHhcCccc---hHHHHHHHhhhhc-chHHH---------------------------
Confidence            9999999999999999999999999995544   7788888887663 11111                           


Q ss_pred             cccccccccccccccCccccccccccccCCCCCcccccccCCCCCCcchHHHHHHHHhhhhhhHhhcCChHHHHHHHHHH
Q 047609          605 CSVSADDGIKSASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHKVMKETRSIDDMIKAGVLL  684 (696)
Q Consensus       605 ~lla~~~~mK~~~~~~~~G~~~~~w~r~~~~~~~~~~~~~~~~~~~l~vf~vAail~~~r~~ii~~~~~~dd~ik~~~~~  684 (696)
                                     ..+|. ..-|.+    ++   +.......+.+.+|++|..+...++++++..+++++++.   .+
T Consensus       408 ---------------~~~~~-~~~e~l----~~---i~~~~~~~d~~~~~~~A~~~~~~~k~~~~~~~~~~~~~~---~~  461 (488)
T KOG2197|consen  408 ---------------MEQGK-SFNEVL----KH---VNLLSEKADVLWVLVRAEALERQNKQMEEPPEVMDEIES---IL  461 (488)
T ss_pred             ---------------HhcCc-cchhHH----hh---cccccccchhhhHHHHHHHHHHHHHhccccccchhhhhh---cc
Confidence                           00111 011111    10   011223468999999999999999999999999999997   55


Q ss_pred             HhhhhccC
Q 047609          685 NFYDTIFP  692 (696)
Q Consensus       685 ~~~~~~~~  692 (696)
                      |-..+++|
T Consensus       462 ~~~~~~l~  469 (488)
T KOG2197|consen  462 QITAGPLD  469 (488)
T ss_pred             cCCCCCCC
Confidence            55555444

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4567 consensus GTPase-activating protein [General function prediction only]	Back alignment and domain information

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p	Back alignment and domain information

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG5210 GTPase-activating protein [General function prediction only]	Back alignment and domain information

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []	Back alignment and domain information

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]	Back alignment and domain information

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]	Back alignment and domain information

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]	Back alignment and domain information

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]	Back alignment and domain information

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]	Back alignment and domain information

>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]	Back alignment and domain information

>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]	Back alignment and domain information

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]	Back alignment and domain information

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]	Back alignment and domain information

>PF14961 BROMI: Broad-minded protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		696
2g77_A		410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-14
1fkm_A		396	Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p		4e-13
3dzx_A		346	Crystal Structure Of The Rabgap Domain Of Human Tbc		4e-12
2qfz_A		345	Crystal Structure Of Human Tbc1 Domain Family Membe		4e-10

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Back alignment and structure

Iteration: 1

Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 29/157 (18%) Query: 431 MSDILAVYAWVDPATGYCQGMSDLLSPFVVLF---------------------------- 462 + IL ++A PA+GY QG++DL++PF F Sbjct: 133 LQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVKIKDPSTYMVDEQIT 192 Query: 463 EDNADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAESLH 522 + AD FWC LL ++ +N+ + G G+++Q++ L +++ D ++Y H N E + Sbjct: 193 DLEADTFWCLTKLLEQITDNY-IHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQ 251 Query: 523 FAFRMLLVLFRRELSFNEALCMWEMMWAADYDEASAS 559 FAFR + L RE + MW+ + E ++S Sbjct: 252 FAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSS 288

PyMOL of 2g77

>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396

Back alignment and structure

>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346

Back alignment and structure

>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		696
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	1e-35
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	2e-10
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	9e-34
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	1e-08
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	2e-20
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	4e-04
2qq8_A		334	TBC1 domain family member 14; structural genomics	3e-14
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	6e-13
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	7e-04
3qye_A		331	TBC1 domain family member 1; rabgap, RAB, myocytes	2e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396	Back alignment and structure

 Score =  138 bits (348), Expect = 1e-35
 Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 29/156 (18%)

Query: 423 RMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFEDN----------------- 465
           +       +  IL ++A   PA+GY QG++DL++PF   F                    
Sbjct: 105 QFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPST 164

Query: 466 -----------ADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLS 514
                      AD FWC   LL ++ +N+ + G  G+++Q++ L  +++  D ++Y H  
Sbjct: 165 YMVDEQITDLEADTFWCLTKLLEQITDNY-IHGQPGILRQVKNLSQLVKRIDADLYNHFQ 223

Query: 515 NIGAESLHFAFRMLLVLFRRELSFNEALCMWEMMWA 550
           N   E + FAFR +  L  RE      + MW+   +
Sbjct: 224 NEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 259

PyMOL of 1fkm

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396	Back alignment and structure

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345	Back alignment and structure

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310	Back alignment and structure

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		696
1fkm_A		396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	100.0
2qfz_A		345	TBC1 domain family member 22A; RAB-GAP, GTPase act	100.0
3qye_A		331	TBC1 domain family member 1; rabgap, RAB, myocytes	100.0
2qq8_A		334	TBC1 domain family member 14; structural genomics	100.0
3hzj_A		310	Rabgap1L, RAB GTPase-activating protein 1-like; st	100.0
4hl4_A		292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3qwl_A		294	TBC1 domain family member 7; RAB GTPase activation	99.97
4hl4_A		292	TBC1 domain family member 20; rabgap, RAB1B, hydro	90.29

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*	Back alignment and structure

Probab=100.00  E-value=2.9e-45  Score=398.80  Aligned_cols=209  Identities=24%  Similarity=0.418  Sum_probs=187.0

Q ss_pred             hhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhh-----
Q 047609          389 DRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFE-----  463 (696)
Q Consensus       389 d~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~-----  463 (696)
                      ++|+. ||+||||.                +.||+++.+++.|+|||.+|+.+||++|||||||+||+|||+++.     
T Consensus        88 ~qI~~-Dv~RT~p~----------------~~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~  150 (396)
T 1fkm_A           88 HQIEI-DIPRTNPH----------------IPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLP  150 (396)
T ss_dssp             HHHHH-HGGGSSTT----------------SGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSC
T ss_pred             HHHHH-HhhhhCCC----------------cccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhcc
Confidence            45655 99999998                578888899999999999999999999999999999999999862     


Q ss_pred             -------------c----------hhhHHHHHHHHHHhhhcccCCCChHHHHHHHHHHHHHHHHHcHHHHHHhhhcCCCc
Q 047609          464 -------------D----------NADAFWCFEMLLRRMRNNFQMEGPTGVMKQLEELWHILELTDREMYKHLSNIGAES  520 (696)
Q Consensus       464 -------------d----------E~dAFw~F~~LM~rir~~f~~~~~~gi~~~l~vL~~LLk~~DPeLy~HL~~~gI~~  520 (696)
                                   +          |++|||||+.||.+++++|. .+..|+...+..+..+|+.++|+||+||+++++.+
T Consensus       151 ~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~lm~~~~~~f~-~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~  229 (396)
T 1fkm_A          151 PSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI-HGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEF  229 (396)
T ss_dssp             GGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS-TTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCT
T ss_pred             ccccccccccchhhccchhhhhhhHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence                         1          89999999999999988775 45789999999999999999999999999999999


Q ss_pred             chhhHHHHHHhhccCCChhHHHHHhhHHHHhccc----------------------------------------------
Q 047609          521 LHFAFRMLLVLFRRELSFNEALCMWEMMWAADYD----------------------------------------------  554 (696)
Q Consensus       521 ~lFa~rWfltLFsreLp~e~vlRLWDv~faeG~~----------------------------------------------  554 (696)
                      .+|+++||++||+++||+++++||||+||++|..                                              
T Consensus       230 ~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  309 (396)
T 1fkm_A          230 IQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTP  309 (396)
T ss_dssp             HHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHCCCccccchhhhhcccccCCcccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999999800                                              


Q ss_pred             ---h---------hHHHHHHHHHHHHHHHHhhcch-hhhhhhhhccCCCCCCCCCCCCCCCCccccccccccccccc
Q 047609          555 ---E---------ASASTLEEKCLEQLVVQLSRES-VVIREGSTENSGGDLKGGLQPKNGNIECSVSADDGIKSASA  618 (696)
Q Consensus       555 ---~---------~~~~~L~yvclA~Lll~~~~~L-~d~~E~m~~Lq~~p~~~~~k~~~~d~e~lla~~~~mK~~~~  618 (696)
                         .         .+..++.++|+|+|......++ .+|.++|.+|++.|.   ..|.+.|++.+++.++.+|..+.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~v~~AlL~~~r~~Ll~~df~~~l~~L~~~p~---~~~~~~di~~ll~~A~~l~~~~~  383 (396)
T 1fkm_A          310 NNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEMDFQETITFLQNPPT---KDWTETDIEMLLSEAFIWQSLYK  383 (396)
T ss_dssp             -------------CHHHHHHHHHHHHHHHTHHHHTTCCHHHHHHHHTSCSC---TTCCHHHHHHHHHHHHHHHHHHC
T ss_pred             ccccccchhccccchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCC---CCcccccHHHHHHHHHHHHHHHh
Confidence               0         2357899999999998888888 899999999999985   56778899999999998888843

PyMOL of 1fkm

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A	Back alignment and structure

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A	Back alignment and structure

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}	Back alignment and structure

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}	Back alignment and structure

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*	Back alignment and structure

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}	Back alignment and structure

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		696
d1fkma2		188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	6e-18
d1fkma1		194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	1e-10
d1fkma1		194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	7e-05

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188	Back information, alignment and structure


class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.2 bits (197), Expect = 6e-18
 Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 33/183 (18%)

Query: 487 GPTGVMKQLEELWHILELTDREMYKHLSNIGAESLHFAFRMLLVLFRRELSFNEALCMWE 546
           G  G+++Q++ L  +++  D ++Y H  N   E + FAFR +  L  RE      + MW+
Sbjct: 1   GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWD 60

Query: 547 MMWAADYDEASASTLEEKCLEQLVVQLSRESVVIREGSTENSGGDLKGGLQPKNGNIECS 606
              +                               E S E +                  
Sbjct: 61  TYLS-------------------------------ETSQEVT--SSYSMSSNDIKPPVTP 87

Query: 607 VSADDGIKSASAHPFCGLTRTFWSRNGHSQNFTVVSSTWNVNEELPVFCVAAILIMNRHK 666
                         F   T    +   ++          +   E  VF  AA LI    +
Sbjct: 88  TEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQ 147

Query: 667 VMK 669
           +M+
Sbjct: 148 LME 150

PyMOL of d1fkma2

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194	Back information, alignment and structure

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		696
d1fkma1		194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.95
d1fkma2		188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.76

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=7.7e-28  Score=234.75  Aligned_cols=80  Identities=31%  Similarity=0.635  Sum_probs=71.9

Q ss_pred             hhhhccccCCCCCCCCCCCCCCcchhhhhhhhccccCchhHHHHHHHHHHhhhcCCCCcccCChhHHHHHHHHhhh----
Q 047609          388 TDRLRISDAPDVPLNTTTSPGEAVNEERIVILNSMRMTKNLARMSDILAVYAWVDPATGYCQGMSDLLSPFVVLFE----  463 (696)
Q Consensus       388 ld~Irl~DVpRTfp~~~~s~~~vi~~Dr~v~l~FF~~~~~~~~L~rIL~aYA~~nPdIGYcQGMNdIaapLLlv~~----  463 (696)
                      .++|+. ||+||||.                +++|+++++++.|+|||.+||.+||++|||||||+||||||+++.    
T Consensus        86 ~~~I~~-Dv~RT~~~----------------~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~  148 (194)
T d1fkma1          86 WHQIEI-DIPRTNPH----------------IPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYL  148 (194)
T ss_dssp             HHHHHH-HGGGSSTT----------------SGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHH-HHHhcCCc----------------ccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhh
Confidence            345666 99999998                578889999999999999999999999999999999999999873    


Q ss_pred             ------------------------chhhHHHHHHHHHHhhhcccC
Q 047609          464 ------------------------DNADAFWCFEMLLRRMRNNFQ  484 (696)
Q Consensus       464 ------------------------dE~dAFw~F~~LM~rir~~f~  484 (696)
                                              .|++|||||..||++++++|.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F~~f~~lm~~i~d~y~  193 (194)
T d1fkma1         149 PPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYI  193 (194)
T ss_dssp             CGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHHHHHHHGGGGGGSS
T ss_pred             hhhhhhhhhhcchhhhhhhhhhhhHHHHHHHHHHHHHHhhhccCC
Confidence                                    289999999999999998874

PyMOL of d1fkma1

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure