Citrus Sinensis ID: 047644

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MVSTSPKTQCRRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHccccHHHHccccccEEEccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccHHHHHHHHHHHccccEEEEEEcccccccccccccccccccEEEEccEEcccccccccccccccEEEEEEEEEcccccHHHHcccccccEEEcccEEEcccccEEEEEEcccccEEEEEEEEEccccccccEEEEEEccccEEEEEEEcccccEEEEcccccEEEEEEEEEccccccccccHHHHccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccEccccEEEccEEEEEEEEEEEEccccccccccHHHcEEEEEEEEccHHHHHHHHHcccHHHHEEEEEEccccccEEEEEEEccccEEEEEEEccccccccccccEEEEEcccEEEEEEEccccccEEEEcccccEEEEEEEEEcccccccHHHHHHHHHHHHcccEEEEcccccc
Coil and Loop (DISEMBL)
mvstspktqcrrvdngsedrisclpdsilcqilsvpptkdavatsilsprwkHAWTSVRNlcfddelsvmgdevSGITVAAFEKFVHSVLarthpssvekFSLRCSYLRSLGMFDYWVSSAISRNVREIEidlrdheriplpasiYRSITLEVLRLRSYfaltlppdgvcfprlkTFHLMLqqptnhlphnlfsrcpclqhlsltvyftaanpasnliiSSATLKTFVLEVMYcshssapnqhtvtivapnlefldiTDDLAVSYAVHQLPSLHKAVYYVMfsewppidrrppvqllagmtktkcltlsagvlh
Flexible Loop (DISEMBL)
mvstspktqcrrvdngsedriscLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLarthpssvekfSLRCSYLRSLGMFDYWVSSAISRNVREIEIdlrdheriplpasiyRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH
Low Complexity Region (SEG)
MVSTSPKTQCRRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH
Disordered region (IsUnstruct)
********************ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLS*****
Disordered Region (DISOPRED)
**********************CLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH
Disordered Region (DISEMBL)
***************GSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH
Disordered Region (DISPRO)
******************DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSA****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSTSPKTQCRRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q9LX51	520	F-box/LRR-repeat protein	yes	no	0.812	0.490	0.333	7e-25
Q9SCQ5	427	Putative FBD-associated F	no	no	0.847	0.622	0.321	4e-23
P0C2G0	403	F-box/LRR-repeat protein	no	no	0.936	0.729	0.294	6e-22
Q1PED9	388	F-box/LRR-repeat protein	no	no	0.815	0.659	0.300	1e-21
Q9LQC1	505	Putative F-box protein At	no	no	0.831	0.516	0.312	3e-21
Q8GW80	484	F-box/LRR-repeat protein	no	no	0.926	0.601	0.297	3e-21
Q9FZ52	449	F-box/FBD/LRR-repeat prot	no	no	0.789	0.552	0.313	1e-20
Q8H1R7	419	F-box/FBD/LRR-repeat prot	no	no	0.754	0.565	0.313	4e-20
Q8L7H1	381	F-box/LRR-repeat protein	no	no	0.808	0.666	0.320	4e-20
Q6NKX3	448	F-box/FBD/LRR-repeat prot	no	no	0.777	0.544	0.291	7e-20

>sp|Q9LX51|FBL64_ARATH F-box/LRR-repeat protein At3g59200 OS=Arabidopsis thaliana GN=At3g59200 PE=2 SV=1

 Score =  114 bits (286), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 135/270 (50%), Gaps = 15/270 (5%)

Query: 13  VDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGD 72
           +D  S DRIS LP+ ++  ILS  PTK+A +TS+LS +W++ +  V NL FDD     G 
Sbjct: 1   MDFVSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGK 60

Query: 73  EVSGITVA-AFEKFVHSVLARTHPSSVEKFSLRCS-YLRSLGMFDYWVSSAISRNVREIE 130
             S + ++ +F +FV  VLA     SV KFSL CS Y   L     W+ + + R V E++
Sbjct: 61  PKSDVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELD 120

Query: 131 IDLRDHERIPLPASIYRSITLEVLRLR--SYFALTLPPDGVCFPRLKTFHL--MLQQPTN 186
           + + ++   PLP+ I+ S TL  L+L   +   LTL    V  P+LKT ++  +  Q   
Sbjct: 121 LSILEY---PLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERG 177

Query: 187 HLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVT 246
                L S CP L+ L L           N    S ++KT      +C  +   N  +V+
Sbjct: 178 FGFVKLLSGCPVLEELVLMNI-----GWENWKFCSVSVKTLKRLTFFCEETYE-NPKSVS 231

Query: 247 IVAPNLEFLDITDDLAVSYAVHQLPSLHKA 276
              PNL +L+ +D +A  Y      SL +A
Sbjct: 232 FDTPNLVYLEYSDAIASKYPKVNFNSLVEA 261

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SCQ5|FBD10_ARATH Putative FBD-associated F-box protein At3g50710 OS=Arabidopsis thaliana GN=At3g50710 PE=4 SV=1

 Score =  108 bits (271), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 140/302 (46%), Gaps = 36/302 (11%)

Query: 19  DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
           DRIS L D +L +I+S  PTKD V T +LS RWK  W  V  L FDDE      E+    
Sbjct: 2   DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEF-----ELEPSY 56

Query: 79  VAAFEKFVHS--VLARTHPSSVEKFSLR-CSYLRSLGMFDYWVSSAISRNVREIEID--- 132
              F K+V    VL R       KF++  C     +     W+   + RN+RE+EI    
Sbjct: 57  YGRFLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIAT---WIRIGMVRNMRELEISHCE 113

Query: 133 --LRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM-LQQPTNHLP 189
              R+H  I LP S+Y    LEVL+L S   L +P D VCFP LK+ HL+ ++  T    
Sbjct: 114 GYFREHRSIKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSH 172

Query: 190 HNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVA 249
             L S CP L+ L L   + + +  S   +   TL++  L ++  S        T  + A
Sbjct: 173 RRLLSGCPVLEELVLDKSYNSFHVRS-FYVEIPTLQS--LSILDTS-GELYGDFTFVVNA 228

Query: 250 PNLEFLDITD---DLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCL 306
           P L++ +  D   DL +   + ++  ++  V Y           R P +LL  +   K L
Sbjct: 229 PALKYFNFVDFYGDLCLRDNMPEVVDVNIKVIY-----------RNPKKLLGPLKSVKRL 277

Query: 307 TL 308
           +L
Sbjct: 278 SL 279

Arabidopsis thaliana (taxid: 3702)

>sp|P0C2G0|FBL27_ARATH F-box/LRR-repeat protein At1g06630 OS=Arabidopsis thaliana GN=At1g06630 PE=2 SV=1

 Score =  105 bits (261), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 22/316 (6%)

Query: 9   QCRRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELS 68
             +++D G  D I+ LPD IL +ILS+  TK AV+TS+LS +W+  +  V  L FDD +S
Sbjct: 2   DAKKLDTGPRDAINWLPDEILGKILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVS 61

Query: 69  VMGD-EVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRS----LGMFDYWVSSAIS 123
            MG+ E S +   +F+  V   +A      + K SL+C   R           W+S+ + 
Sbjct: 62  GMGEQEASYVFPESFKDLVDRTVALQCDYPIRKLSLKCHVGRDDEQRKACVGRWISNVVG 121

Query: 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTF--HLML 181
           R V E+ + + D     L   +    TL  L L +   L   P  V  P LK    H + 
Sbjct: 122 RGVSEVVLRINDRGLHFLSPQLLTCKTLVKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVF 181

Query: 182 QQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPN 241
                 L + L + CP ++ L    Y      +    ISS TLK   L V Y  H     
Sbjct: 182 FDDFGELSNVLLAGCPVVEAL----YLNQNGESMPYTISSPTLKR--LSVHYEYHF---- 231

Query: 242 QHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMT 301
           +  ++   PNLE+LD +D     Y    L SL +A  Y+   +   ++     +L+ G+ 
Sbjct: 232 ESVISFDLPNLEYLDYSDYALYGYPQVNLESLVEA--YLNLDKAEHVESPDVTKLIMGIR 289

Query: 302 KTKCLTL---SAGVLH 314
             + L+L   S GV++
Sbjct: 290 NVEILSLSPDSVGVIY 305

Arabidopsis thaliana (taxid: 3702)

>sp|Q1PED9|FBL63_ARATH F-box/LRR-repeat protein At3g59190 OS=Arabidopsis thaliana GN=At3g59190 PE=2 SV=1

 Score =  103 bits (258), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 131/276 (47%), Gaps = 20/276 (7%)

Query: 11  RRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDD---EL 67
           +R+D+GS+D IS LPD++LC +LS  PT +A +TS+L+ RW+     V NL  D+   + 
Sbjct: 4   KRMDSGSKDIISNLPDALLCHVLSFLPTTEAASTSVLAKRWRFLLAFVPNLDLDNMIYDR 63

Query: 68  SVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVR 127
             MG         +F+ FV  V+A    + ++KFSLRC         + WV   + R V 
Sbjct: 64  PKMGRRKRLELRKSFKLFVDRVMALQGNAPLKKFSLRCKIGSDPSRVNGWVLKVLDRGVE 123

Query: 128 EIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHL-MLQQPTN 186
           E+++ +      PLP  +  + TL  L++      T+       P+LKT HL  +     
Sbjct: 124 ELDLYIASEYEYPLPPKVLMTKTLVSLKVSGTDEFTIDVGEFFLPKLKTLHLSAISFGDE 183

Query: 187 HLP--HNLFSRCPCLQHLSLTV----YFTAANPASNLIISSATLKTFVLEVMYCSHSSAP 240
             P    L S C  L+ L +      Y+   +      +SS +LK   ++   C +    
Sbjct: 184 GGPPFAKLISACHALEELVMIKMMWDYWEFCS------VSSPSLKRVSID---CENIDE- 233

Query: 241 NQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKA 276
           N  +V+   PNL +L+ TD +AV Y      SL +A
Sbjct: 234 NPKSVSFDTPNLVYLEFTDTVAVKYPKVNFDSLVEA 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQC1|FB65_ARATH Putative F-box protein At1g58310 OS=Arabidopsis thaliana GN=At1g58310 PE=4 SV=2

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 136/288 (47%), Gaps = 27/288 (9%)

Query: 17  SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSV------- 69
           S D IS LPDS+LC ILS   TK+A +TS+L+ +W++ + SV NL FDD + +       
Sbjct: 6   SRDIISGLPDSLLCHILSFLNTKEAASTSVLAKKWRYLFASVPNLDFDDSVHLRLGKRNP 65

Query: 70  ---------MGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSS 120
                    M +E S     +F  FV  VL     S + KFSL+      +     W+  
Sbjct: 66  AVSGEDYLKMINERSDQLSTSFMDFVDQVLRLQDNSPLHKFSLKIRDCVDIVRIICWILK 125

Query: 121 AISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM 180
            + R V ++E+D+    +  LP+ I+ S TL  L+L       +  + V  P+LKT H++
Sbjct: 126 VLERGVSDLELDMHLKWKSSLPSKIFLSETLVRLKLSVERGPFIDVEDVHLPKLKTLHIV 185

Query: 181 LQQPTNHLP--HNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLK--TFVLEVMYCSH 236
             +   H    + L S C  L+ L+L   + +      + +S  TLK  TF  EVM    
Sbjct: 186 SVKFEKHGIGLNKLLSGCHILEELNLE--YISWCLWDFVSVSLTTLKRLTFCGEVM---- 239

Query: 237 SSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSE 284
               N  +V+   PNL +L  TD +A  Y+     SL +A   +  SE
Sbjct: 240 -QDENPISVSFNTPNLVYLMFTDAIADEYSTVNFDSLVEAHINLQMSE 286

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GW80|FBL65_ARATH F-box/LRR-repeat protein At3g59210 OS=Arabidopsis thaliana GN=At3g59210 PE=2 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 150/323 (46%), Gaps = 32/323 (9%)

Query: 13  VDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGD 72
           +D+ S+D I+CLPD++LCQILS   TK+A  TS+LS RW++ +  V NL F D L  +  
Sbjct: 1   MDDCSKDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDF-DVLPSLHP 59

Query: 73  EVS--GITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDY----WVSSAISRNV 126
           EV+       +F  FV  VL       + KFSL+C      G+ D     W+ + +   V
Sbjct: 60  EVAMQDQDQTSFIDFVDRVLKLRGKDHINKFSLKCGD----GIEDEDVFPWILNTLRHGV 115

Query: 127 REIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHL--MLQQP 184
            ++ + +       LP+ ++ S TL  L++       +    VC P+LKT +L  ++ + 
Sbjct: 116 SDLSLHVSPSLVYWLPSKVFASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFEE 175

Query: 185 TNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHT 244
                  L S CP L+ LSL     A +   +  +SS  LK   L   YC+HSS  N  +
Sbjct: 176 GKIGFAKLLSGCPVLEELSL--LNLAWDRWDSCSVSSKILKRLTL---YCAHSSR-NPKS 229

Query: 245 VTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRR------------- 291
           V+   PN+ + + +D++A  Y      SL +A   +  ++    + R             
Sbjct: 230 VSFDTPNVVYFEYSDNIANKYPKVNFDSLVEASIGIRMTKVQKANARYVSDVDEETEMVG 289

Query: 292 PPVQLLAGMTKTKCLTLSAGVLH 314
               LL G+   K L LS   L 
Sbjct: 290 NATDLLMGICNVKTLYLSYDTLE 312

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ52|FDL3_ARATH F-box/FBD/LRR-repeat protein At1g16930 OS=Arabidopsis thaliana GN=At1g16930 PE=2 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/271 (31%), Positives = 129/271 (47%), Gaps = 23/271 (8%)

Query: 19  DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
           DRIS LPDS+LCQILS   TK++V TS+LS RW++ W  V  L  D   +   D+V    
Sbjct: 15  DRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSN-NFPDDDV---- 69

Query: 79  VAAFEKFVHSVLARTHPSSVEKFSLRCSYLR-SLGMFDYWVSSAISRNVREI----EIDL 133
              F  FV+  L   +   +E+F L           F  W+++ I R V       E+D 
Sbjct: 70  ---FVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFNVHNEVD- 125

Query: 134 RDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHL-MLQQPTNHLPHNL 192
            D E + +P S+Y    L  L+L  Y      P+ V  P +K  HL M++   +     L
Sbjct: 126 DDDELVKMPLSLYSCERLVNLQL--YRVALDHPESVSLPCVKIMHLDMVKYDADSTLEIL 183

Query: 193 FSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNL 252
            S CP L+   LT+     +    + + S +LK+F ++    S       H VTI AP L
Sbjct: 184 ISGCPVLEE--LTIVRDPNDSLEVVCVRSQSLKSFKID----SERYESQNHVVTIDAPRL 237

Query: 253 EFLDITDDLAVSYAVHQLPSLHKAVYYVMFS 283
           E++++ D  + S+ +H +    K    V+F+
Sbjct: 238 EYMNLCDHRSDSFIIHNIGPFAKVDIDVIFN 268

Arabidopsis thaliana (taxid: 3702)

>sp|Q8H1R7|FDL27_ARATH F-box/FBD/LRR-repeat protein At4g26340 OS=Arabidopsis thaliana GN=At4g26340 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 128/268 (47%), Gaps = 31/268 (11%)

Query: 19  DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
           DRIS L D +L QILS  P KD VATS+LS RW+  W  V  L +DD     GD      
Sbjct: 2   DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHT-GD------ 54

Query: 79  VAAFEKFVHSVLARTHPSSVEKFSLR----CSYLRSLGMFDYWVSSAISRNVREIEIDLR 134
             +F +FV+  L   +   ++   L     C  +  +G+   W+  A++R +R+++I++R
Sbjct: 55  YKSFSQFVYRSLLSNNAPVIKHLHLNLGPDCPAI-DIGL---WIGFALTRRLRQLKINIR 110

Query: 135 ---DHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLML--QQPTNHLP 189
              +     LP+S+Y S TLE LRL ++  L +P   VC P LK  HL     +    LP
Sbjct: 111 TSSNDASFSLPSSLYTSDTLETLRLINFVLLDVPS-SVCLPSLKVLHLKTVDYEDDASLP 169

Query: 190 HNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVA 249
             LF  CP L+ L +  +          ++ S       L  +     +        I  
Sbjct: 170 SLLFG-CPNLEELFVERHDQDLEMDVTFVVPS-------LRRLSMIDKNYGQCDRYVIDV 221

Query: 250 PNLEFLDITDDLAVSYAVHQLPSLHKAV 277
           P+L++L+ITDD    Y V Q+ ++ + V
Sbjct: 222 PSLKYLNITDDAV--YDVRQIENMPELV 247

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L7H1|FBL75_ARATH F-box/LRR-repeat protein At4g14103 OS=Arabidopsis thaliana GN=At4g14103 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 128/265 (48%), Gaps = 11/265 (4%)

Query: 15  NGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEV 74
           +GS D IS LPD I   ILS  PTK+A +TS+LS +W++ +  V NL  DD + +  +  
Sbjct: 4   SGSRDVISSLPDDISSHILSFLPTKEAASTSVLSKKWRYLFAFVPNLDLDDSVYLNPENE 63

Query: 75  SGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLR 134
           + I+  +F  FV  VLA    S + KFSL+            W+++ + R V ++++ L 
Sbjct: 64  TEIS-TSFMDFVDRVLALQGNSPLHKFSLKIGDGIDPVRIIPWINNVLERGVSDLDLHLN 122

Query: 135 DHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPH--NL 192
                 LP+ +Y   TL  L+LR     T+  + V  P+LKT ++       H      L
Sbjct: 123 LESEFLLPSQVYLCKTLVWLKLRFGLYPTIDVEDVHLPKLKTLYIEATHFEEHGVGLTKL 182

Query: 193 FSRCPCLQHLSL-TVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPN 251
            S CP L+ L L  + +   + AS   +S  TLK   L   +      P   +V +  PN
Sbjct: 183 LSGCPMLEDLVLDDISWFIWDFAS---VSVPTLKR--LRFSWQERDEFPK--SVLLDTPN 235

Query: 252 LEFLDITDDLAVSYAVHQLPSLHKA 276
           L +L  TD +A  Y    L SL +A
Sbjct: 236 LVYLKFTDTVAGKYPKVNLDSLVEA 260

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NKX3|FDL14_ARATH F-box/FBD/LRR-repeat protein At2g04230 OS=Arabidopsis thaliana GN=At2g04230 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 10/254 (3%)

Query: 9   QCRRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELS 68
           Q  + D+ +EDRIS LPD++L QILS  PT++A+ATS+LS RW+  WT +  L FD   +
Sbjct: 3   QKFKTDSMNEDRISDLPDALLLQILSSLPTENAIATSVLSKRWRSLWTMLPKLKFDSNFN 62

Query: 69  VMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVRE 128
            + D+   I    F + V+  L+      +E   L             W+++A +R VR+
Sbjct: 63  PVFDD-DNIDPTMFSENVYKTLSLHKAPVLESLHLSFEGRTDCLHVGIWIATAFARGVRK 121

Query: 129 IEID--LRDHERIPLPASIYR-SITLEVLRLRSYFALTLPPDGVCFPRLKTFHL-MLQQP 184
           + +D   ++ + + LP+ ++  + +LE+L+L+    L  P   VC   L+  +L  +   
Sbjct: 122 LVLDSFYQEDQTVTLPSVLFSYNDSLEILKLKCAIDLDFPS-RVCLKSLRKLYLDQVHFK 180

Query: 185 TNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHT 244
                 NL   CP LQ L +  Y  A    +   I+S +L+   +E +           +
Sbjct: 181 DEESVCNLLCGCPSLQDLVVHRYSNA--DVATFTIASPSLQRLTIEDL--RQEGGYGNGS 236

Query: 245 VTIVAPNLEFLDIT 258
             I AP L++L+I 
Sbjct: 237 YVINAPGLKYLNIN 250

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
147812093	607	hypothetical protein VITISV_040899 [Viti	0.923	0.477	0.344	1e-27
15231646	520	F-box/LRR-repeat protein [Arabidopsis th	0.812	0.490	0.333	4e-23
296086764	348	unnamed protein product [Vitis vinifera]	0.853	0.770	0.330	1e-21
15229834	427	putative FBD-associated F-box protein [A	0.847	0.622	0.321	2e-21
297819758	426	F-box family protein [Arabidopsis lyrata	0.847	0.624	0.307	3e-21
297803460	418	F-box family protein [Arabidopsis lyrata	0.738	0.555	0.335	2e-20
297817218	478	predicted protein [Arabidopsis lyrata su	0.799	0.525	0.322	3e-20
238478373	403	F-box domain-containing protein [Arabido	0.936	0.729	0.294	3e-20
238478375	461	F-box domain-containing protein [Arabido	0.936	0.637	0.294	4e-20
240254023	477	F-box domain-containing protein [Arabido	0.936	0.616	0.294	4e-20

>gi|147812093|emb|CAN74740.1| hypothetical protein VITISV_040899 [Vitis vinifera]

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 109/316 (34%), Positives = 154/316 (48%), Gaps = 26/316 (8%)

Query: 17  SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSG 76
           S D IS LPD +LC ILS  PTK AV TSILS RW++ W SV  L FDDEL +    +  
Sbjct: 8   SRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVE 67

Query: 77  IT--VAAFEKFVHSVLARTHPSSVEKFSLRCSYL-RSLGMFDYWVSSAISRNVREIEIDL 133
           +   +  F+ FV  VL  +  S ++KF  R  Y   +L     W+  A+ R V+E+++ L
Sbjct: 68  LEERIIMFQNFVDGVLRHSEVSCIKKF--RLGYRDNNLDSVYSWICIALERRVQELDLHL 125

Query: 134 RDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM-LQQPTNHLPHNL 192
               R+ LP   +   TL V++L     L +P   V  P LK  HL  ++   +     L
Sbjct: 126 LIDWRVELPPMFFICKTLVVVKLSCALFLDIPT-TVWLPSLKALHLKSVEYSDDDSIQKL 184

Query: 193 FSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSA------PNQHTVT 246
            S CP L+ L +           N  +S+ +LK  +L + + +   A         + V 
Sbjct: 185 LSGCPVLEELVIEREERDNQWVVN--VSNPSLK--ILRIFFFTDGFAHPYEQEDQDYKVV 240

Query: 247 IVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYV-----MFSEWP---PIDRRPPV-QLL 297
           + APNLE+L ITD L+  Y V  LPSL KA   V      F E P    I    P+ +LL
Sbjct: 241 VDAPNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELL 300

Query: 298 AGMTKTKCLTLSAGVL 313
             ++  KCL+L+   L
Sbjct: 301 GRISNVKCLSLTGVTL 316

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231646|ref|NP_191479.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75264308|sp|Q9LX51.1|FBL64_ARATH RecName: Full=F-box/LRR-repeat protein At3g59200 gi|7801670|emb|CAB91590.1| putative protein [Arabidopsis thaliana] gi|26450835|dbj|BAC42525.1| unknown protein [Arabidopsis thaliana] gi|29028916|gb|AAO64837.1| At3g59200 [Arabidopsis thaliana] gi|332646367|gb|AEE79888.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  114 bits (286), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/270 (33%), Positives = 135/270 (50%), Gaps = 15/270 (5%)

Query: 13  VDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGD 72
           +D  S DRIS LP+ ++  ILS  PTK+A +TS+LS +W++ +  V NL FDD     G 
Sbjct: 1   MDFVSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGK 60

Query: 73  EVSGITVA-AFEKFVHSVLARTHPSSVEKFSLRCS-YLRSLGMFDYWVSSAISRNVREIE 130
             S + ++ +F +FV  VLA     SV KFSL CS Y   L     W+ + + R V E++
Sbjct: 61  PKSDVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELD 120

Query: 131 IDLRDHERIPLPASIYRSITLEVLRLR--SYFALTLPPDGVCFPRLKTFHL--MLQQPTN 186
           + + ++   PLP+ I+ S TL  L+L   +   LTL    V  P+LKT ++  +  Q   
Sbjct: 121 LSILEY---PLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERG 177

Query: 187 HLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVT 246
                L S CP L+ L L           N    S ++KT      +C  +   N  +V+
Sbjct: 178 FGFVKLLSGCPVLEELVLMNI-----GWENWKFCSVSVKTLKRLTFFCEETYE-NPKSVS 231

Query: 247 IVAPNLEFLDITDDLAVSYAVHQLPSLHKA 276
              PNL +L+ +D +A  Y      SL +A
Sbjct: 232 FDTPNLVYLEYSDAIASKYPKVNFNSLVEA 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086764|emb|CBI32913.3| unnamed protein product [Vitis vinifera]

 Score =  109 bits (273), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 104/315 (33%), Positives = 144/315 (45%), Gaps = 47/315 (14%)

Query: 17  SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSG 76
           S D IS LPD +LC ILS  PTK AV TSILS RW++ W SV  L FDDEL +    +  
Sbjct: 8   SRDIISNLPDELLCHILSFLPTKFAVGTSILSKRWRYLWASVPILDFDDELWLNPSTLVE 67

Query: 77  IT--VAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLR 134
           +   +  F+ FV  VL  +  S ++KF         LG  D         N+        
Sbjct: 68  LEERIIMFQNFVDGVLRHSEVSCIKKF--------RLGYRD--------NNL-------- 103

Query: 135 DHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM-LQQPTNHLPHNLF 193
           D+  + LP   +   TL V++L     L +P   V  P LK  HL  ++   +     L 
Sbjct: 104 DNWGVELPPMFFICKTLVVVKLSCALFLDIPT-TVWLPSLKALHLKSVEYSDDDSIQKLL 162

Query: 194 SRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSA------PNQHTVTI 247
           S CP L+ L +           N  +S+ +LK  +L + + +   A         + V +
Sbjct: 163 SGCPVLEELVIEREERDNQWVVN--VSNPSLK--ILRIFFFTDGFAHPYEQEDQDYKVVV 218

Query: 248 VAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYV-----MFSEWP---PIDRRPPV-QLLA 298
            APNLE+L ITD L+  Y V  LPSL KA   V      F E P    I    P+ +LL 
Sbjct: 219 DAPNLEYLSITDYLSKDYFVKDLPSLVKAFIDVEQDSEEFEESPHNGGISYHGPIYELLG 278

Query: 299 GMTKTKCLTLSAGVL 313
            ++  KCL+L+   L
Sbjct: 279 RISNVKCLSLTGVTL 293

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229834|ref|NP_190640.1| putative FBD-associated F-box protein [Arabidopsis thaliana] gi|75265626|sp|Q9SCQ5.1|FBD10_ARATH RecName: Full=Putative FBD-associated F-box protein At3g50710 gi|6561974|emb|CAB62440.1| putative protein [Arabidopsis thaliana] gi|332645179|gb|AEE78700.1| putative FBD-associated F-box protein [Arabidopsis thaliana]

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 140/302 (46%), Gaps = 36/302 (11%)

Query: 19  DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
           DRIS L D +L +I+S  PTKD V T +LS RWK  W  V  L FDDE      E+    
Sbjct: 2   DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEF-----ELEPSY 56

Query: 79  VAAFEKFVHS--VLARTHPSSVEKFSLR-CSYLRSLGMFDYWVSSAISRNVREIEID--- 132
              F K+V    VL R       KF++  C     +     W+   + RN+RE+EI    
Sbjct: 57  YGRFLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIAT---WIRIGMVRNMRELEISHCE 113

Query: 133 --LRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM-LQQPTNHLP 189
              R+H  I LP S+Y    LEVL+L S   L +P D VCFP LK+ HL+ ++  T    
Sbjct: 114 GYFREHRSIKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSH 172

Query: 190 HNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVA 249
             L S CP L+ L L   + + +  S   +   TL++  L ++  S        T  + A
Sbjct: 173 RRLLSGCPVLEELVLDKSYNSFHVRS-FYVEIPTLQS--LSILDTS-GELYGDFTFVVNA 228

Query: 250 PNLEFLDITD---DLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCL 306
           P L++ +  D   DL +   + ++  ++  V Y           R P +LL  +   K L
Sbjct: 229 PALKYFNFVDFYGDLCLRDNMPEVVDVNIKVIY-----------RNPKKLLGPLKSVKRL 277

Query: 307 TL 308
           +L
Sbjct: 278 SL 279

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819758|ref|XP_002877762.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297323600|gb|EFH54021.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  108 bits (270), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 136/302 (45%), Gaps = 36/302 (11%)

Query: 19  DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
           DRIS L D +L +I S  PTKD V T +LS RWK  WT V  L FDDE      E+    
Sbjct: 2   DRISNLSDDLLLKIFSSLPTKDVVVTMLLSKRWKFLWTMVPKLRFDDEF-----ELDPSY 56

Query: 79  VAAFEKFVHS--VLARTHPSSVEKFSLR-CSYLRSLGMFDYWVSSAISRNVREIEID--- 132
              F K+V    VL R       KF +  C     +     W+   + R++RE+EI    
Sbjct: 57  YGRFLKYVDKSMVLNRAQVLETVKFDVGPCCSSEDIAT---WIRIGMVRHMRELEISHCE 113

Query: 133 --LRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM-LQQPTNHLP 189
              R+H  I LP S+Y    LEVL+L S   L +P   VCFP LK+ HL+ ++  T    
Sbjct: 114 AYFREHRSIKLPKSLYTYEKLEVLKLASTVVLNVPI-AVCFPSLKSLHLVCVEYKTKKSH 172

Query: 190 HNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVA 249
             L S CP L+ L L   + + +  S  +      +  +L+    +        T  + A
Sbjct: 173 RRLLSGCPVLEDLVLDKSYNSFHVRSFYVEIPTLQRLSILD----TSGELYGDFTFVVNA 228

Query: 250 PNLEFLDITD---DLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCL 306
           P+L++ +  D   DL +   +H++   +  V Y           + P +LL  +   K L
Sbjct: 229 PSLKYFNFVDFYGDLCLRDTMHEVVEANIKVIY-----------KNPKKLLGPLKSVKRL 277

Query: 307 TL 308
           +L
Sbjct: 278 SL 279

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297803460|ref|XP_002869614.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297315450|gb|EFH45873.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  105 bits (263), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 134/265 (50%), Gaps = 33/265 (12%)

Query: 19  DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
           DRIS L D +L +ILS  PTKD VATS+LS RW+  W  V  L ++D ++  GD      
Sbjct: 2   DRISQLSDDLLLRILSCVPTKDVVATSLLSKRWQFLWMLVPQLQYND-INHSGD------ 54

Query: 79  VAAFEKFVHSVLARTHPSSVEKFSL----RCSYLRSLGMFDYWVSSAISRNVREIEIDLR 134
              F +FV+  L     S +E   L     C  +  +G+   W+  A+SR +RE+EI++R
Sbjct: 55  YKNFSQFVYRSLLSNKASVIEHLHLNLGPECPAI-DIGL---WIGIALSRRLRELEINIR 110

Query: 135 ---DHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLML--QQPTNHLP 189
              ++    LP+S+Y S TLE LR+ + F L + P  VC P LK  HL     +    LP
Sbjct: 111 SSFENVSFSLPSSLYTSDTLETLRVIN-FVLLVVPSSVCLPSLKVLHLKTVDYEDDASLP 169

Query: 190 HNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLE-VMYCSHSSAPNQHTVTIV 248
            NL S CP L+ L L  +   +     +++ S    + + E  + C            I 
Sbjct: 170 -NLLSGCPNLEELCLERHDQDSEMDFTVVVPSLRRLSMMDENYVKCGR--------YVID 220

Query: 249 APNLEFLDITDDLAVSYAVHQLPSL 273
            P+L++L+ITD+    Y V Q+ ++
Sbjct: 221 VPSLKYLNITDEAV--YNVRQIENM 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817218|ref|XP_002876492.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297322330|gb|EFH52751.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/279 (32%), Positives = 136/279 (48%), Gaps = 28/279 (10%)

Query: 13  VDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSV--- 69
           +D+ S+D I+ LPD++LC ILS   TK+A +TS+LS RW++    V NL FDD + +   
Sbjct: 1   MDSVSKDMINVLPDALLCHILSYLTTKEAASTSLLSRRWRYLLAFVPNLEFDDSVFLHRD 60

Query: 70  -------MGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCS-YLRSLGMFDYWVSSA 121
                    DE+S     +F +FV  VLA     ++ +FSL CS Y   L     W+ + 
Sbjct: 61  KRHDKPKSDDELS----TSFMEFVDRVLALQGNGTINRFSLDCSNYDVDLARVTGWILNV 116

Query: 122 ISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPD--GVCFPRLKTFHL 179
           + R V ++++ L ++    LP+ I+ S TL  L+L     LTL  D   V  P+LKT ++
Sbjct: 117 LGRGVSDLDLSLLEYS---LPSEIFVSKTLVKLKLGPANDLTLTIDRKDVFLPKLKTLYI 173

Query: 180 --MLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHS 237
             +  Q        L S CP L+ L L           N    S ++KT      +C   
Sbjct: 174 DSVEVQERGFGFVKLLSGCPVLEELVLMNI-----GWENWKFCSVSVKTLKRLTFFC-ED 227

Query: 238 SAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKA 276
           S  N  +V+   PNL +L+ +D +A  Y      SL +A
Sbjct: 228 SYENPKSVSFDTPNLVYLEYSDAIAGKYPKVNFNSLVEA 266

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478373|ref|NP_001154312.1| F-box domain-containing protein [Arabidopsis thaliana] gi|125991852|sp|P0C2G0.1|FBL27_ARATH RecName: Full=F-box/LRR-repeat protein At1g06630 gi|119935969|gb|ABM06048.1| At1g06630 [Arabidopsis thaliana] gi|332189891|gb|AEE28012.1| F-box domain-containing protein [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 22/316 (6%)

Query: 9   QCRRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELS 68
             +++D G  D I+ LPD IL +ILS+  TK AV+TS+LS +W+  +  V  L FDD +S
Sbjct: 2   DAKKLDTGPRDAINWLPDEILGKILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVS 61

Query: 69  VMGD-EVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRS----LGMFDYWVSSAIS 123
            MG+ E S +   +F+  V   +A      + K SL+C   R           W+S+ + 
Sbjct: 62  GMGEQEASYVFPESFKDLVDRTVALQCDYPIRKLSLKCHVGRDDEQRKACVGRWISNVVG 121

Query: 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTF--HLML 181
           R V E+ + + D     L   +    TL  L L +   L   P  V  P LK    H + 
Sbjct: 122 RGVSEVVLRINDRGLHFLSPQLLTCKTLVKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVF 181

Query: 182 QQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPN 241
                 L + L + CP ++ L    Y      +    ISS TLK   L V Y  H     
Sbjct: 182 FDDFGELSNVLLAGCPVVEAL----YLNQNGESMPYTISSPTLKR--LSVHYEYHF---- 231

Query: 242 QHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMT 301
           +  ++   PNLE+LD +D     Y    L SL +A  Y+   +   ++     +L+ G+ 
Sbjct: 232 ESVISFDLPNLEYLDYSDYALYGYPQVNLESLVEA--YLNLDKAEHVESPDVTKLIMGIR 289

Query: 302 KTKCLTL---SAGVLH 314
             + L+L   S GV++
Sbjct: 290 NVEILSLSPDSVGVIY 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238478375|ref|NP_001154313.1| F-box domain-containing protein [Arabidopsis thaliana] gi|332189892|gb|AEE28013.1| F-box domain-containing protein [Arabidopsis thaliana]

 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 22/316 (6%)

Query: 9   QCRRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELS 68
             +++D G  D I+ LPD IL +ILS+  TK AV+TS+LS +W+  +  V  L FDD +S
Sbjct: 2   DAKKLDTGPRDAINWLPDEILGKILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVS 61

Query: 69  VMGD-EVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRS----LGMFDYWVSSAIS 123
            MG+ E S +   +F+  V   +A      + K SL+C   R           W+S+ + 
Sbjct: 62  GMGEQEASYVFPESFKDLVDRTVALQCDYPIRKLSLKCHVGRDDEQRKACVGRWISNVVG 121

Query: 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTF--HLML 181
           R V E+ + + D     L   +    TL  L L +   L   P  V  P LK    H + 
Sbjct: 122 RGVSEVVLRINDRGLHFLSPQLLTCKTLVKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVF 181

Query: 182 QQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPN 241
                 L + L + CP ++ L    Y      +    ISS TLK   L V Y  H     
Sbjct: 182 FDDFGELSNVLLAGCPVVEAL----YLNQNGESMPYTISSPTLKR--LSVHYEYHF---- 231

Query: 242 QHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMT 301
           +  ++   PNLE+LD +D     Y    L SL +A  Y+   +   ++     +L+ G+ 
Sbjct: 232 ESVISFDLPNLEYLDYSDYALYGYPQVNLESLVEA--YLNLDKAEHVESPDVTKLIMGIR 289

Query: 302 KTKCLTL---SAGVLH 314
             + L+L   S GV++
Sbjct: 290 NVEILSLSPDSVGVIY 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240254023|ref|NP_563769.4| F-box domain-containing protein [Arabidopsis thaliana] gi|332189890|gb|AEE28011.1| F-box domain-containing protein [Arabidopsis thaliana]

 Score =  104 bits (260), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 143/316 (45%), Gaps = 22/316 (6%)

Query: 9   QCRRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELS 68
             +++D G  D I+ LPD IL +ILS+  TK AV+TS+LS +W+  +  V  L FDD +S
Sbjct: 2   DAKKLDTGPRDAINWLPDEILGKILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVS 61

Query: 69  VMGD-EVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRS----LGMFDYWVSSAIS 123
            MG+ E S +   +F+  V   +A      + K SL+C   R           W+S+ + 
Sbjct: 62  GMGEQEASYVFPESFKDLVDRTVALQCDYPIRKLSLKCHVGRDDEQRKACVGRWISNVVG 121

Query: 124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTF--HLML 181
           R V E+ + + D     L   +    TL  L L +   L   P  V  P LK    H + 
Sbjct: 122 RGVSEVVLRINDRGLHFLSPQLLTCKTLVKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVF 181

Query: 182 QQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPN 241
                 L + L + CP ++ L    Y      +    ISS TLK   L V Y  H     
Sbjct: 182 FDDFGELSNVLLAGCPVVEAL----YLNQNGESMPYTISSPTLKR--LSVHYEYHF---- 231

Query: 242 QHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMT 301
           +  ++   PNLE+LD +D     Y    L SL +A  Y+   +   ++     +L+ G+ 
Sbjct: 232 ESVISFDLPNLEYLDYSDYALYGYPQVNLESLVEA--YLNLDKAEHVESPDVTKLIMGIR 289

Query: 302 KTKCLTL---SAGVLH 314
             + L+L   S GV++
Sbjct: 290 NVEILSLSPDSVGVIY 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2081157	520	AT3G59200 "AT3G59200" [Arabido	0.808	0.488	0.335	1.9e-25
TAIR|locus:2101674	427	AT3G50710 "AT3G50710" [Arabido	0.726	0.533	0.344	5.6e-25
TAIR|locus:2081172	484	AT3G59210 "AT3G59210" [Arabido	0.815	0.528	0.319	4.9e-24
TAIR|locus:2162489	450	AT5G22660 "AT5G22660" [Arabido	0.917	0.64	0.305	7.3e-24
TAIR|locus:2081297	388	AT3G59190 "AT3G59190" [Arabido	0.824	0.667	0.304	8.7e-24
TAIR|locus:2015681	449	AT1G16930 "AT1G16930" [Arabido	0.792	0.554	0.310	1.6e-23
TAIR|locus:2009125	477	AT1G06630 "AT1G06630" [Arabido	0.929	0.612	0.296	4.6e-23
TAIR|locus:2136834	419	AT4G26340 "AT4G26340" [Arabido	0.754	0.565	0.320	4.9e-23
TAIR|locus:2162499	443	AT5G22670 "AT5G22670" [Arabido	0.805	0.571	0.332	9.1e-23
TAIR|locus:2162454	437	AT5G22700 "AT5G22700" [Arabido	0.888	0.638	0.318	1.8e-22

TAIR|locus:2081157 AT3G59200 "AT3G59200" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 91/271 (33%), Positives = 136/271 (50%)

Query:    13 VDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGD 72
             +D  S DRIS LP+ ++  ILS  PTK+A +TS+LS +W++ +  V NL FDD     G 
Sbjct:     1 MDFVSRDRISSLPNPVVSHILSFLPTKEAASTSVLSKKWRYLFAYVTNLDFDDSDYQDGK 60

Query:    73 EVSGITVA-AFEKFVHSVLARTHPSSVEKFSLRCS-YLRSLGMFDYWVSSAISRNVREIE 130
               S + ++ +F +FV  VLA     SV KFSL CS Y   L     W+ + + R V E++
Sbjct:    61 PKSDVELSRSFMEFVDRVLALQGNGSVNKFSLECSNYDVDLARVTGWILNVLGRGVSELD 120

Query:   131 IDLRDHERIPLPASIYRSITLEVLRL--RSYFALTLPPDGVCFPRLKTFHL--MLQQPTN 186
             + + ++   PLP+ I+ S TL  L+L   +   LTL    V  P+LKT ++  +  Q   
Sbjct:   121 LSILEY---PLPSEIFVSKTLVRLKLGPANDLTLTLDRKDVFLPKLKTLYIDCVDVQERG 177

Query:   187 HLPHNLFSRCPCLQHLSLTVYFTAANPA-SNLIISSATLKTFVLEVMYCSHSSAPNQHTV 245
                  L S CP L+ L L       N    N    S ++KT      +C  +   N  +V
Sbjct:   178 FGFVKLLSGCPVLEELVLM------NIGWENWKFCSVSVKTLKRLTFFCEETYE-NPKSV 230

Query:   246 TIVAPNLEFLDITDDLAVSYAVHQLPSLHKA 276
             +   PNL +L+ +D +A  Y      SL +A
Sbjct:   231 SFDTPNLVYLEYSDAIASKYPKVNFNSLVEA 261

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101674 AT3G50710 "AT3G50710" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 5.6e-25, P = 5.6e-25
 Identities = 86/250 (34%), Positives = 120/250 (48%)

Query:    19 DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
             DRIS L D +L +I+S  PTKD V T +LS RWK  W  V  L FDDE      E+    
Sbjct:     2 DRISNLSDDLLLKIVSSLPTKDVVVTMLLSKRWKFLWMMVPKLRFDDEF-----ELEPSY 56

Query:    79 VAAFEKFVHS--VLARTHPSSVEKFSLR-CSYLRSLGMFDYWVSSAISRNVREIEID--- 132
                F K+V    VL R       KF++  C     +     W+   + RN+RE+EI    
Sbjct:    57 YGRFLKYVDKSMVLNRAQVLETVKFNVGPCCSSEDIAT---WIRIGMVRNMRELEISHCE 113

Query:   133 --LRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM-LQQPTNHLP 189
                R+H  I LP S+Y    LEVL+L S   L +P D VCFP LK+ HL+ ++  T    
Sbjct:   114 GYFREHRSIKLPKSLYTYEKLEVLKLASTVVLNVPID-VCFPSLKSLHLVCVEYKTKKSH 172

Query:   190 HNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVA 249
               L S CP L+ L L   + + +  S   +   TL++  L ++  S        T  + A
Sbjct:   173 RRLLSGCPVLEELVLDKSYNSFHVRS-FYVEIPTLQS--LSILDTS-GELYGDFTFVVNA 228

Query:   250 PNLEFLDITD 259
             P L++ +  D
Sbjct:   229 PALKYFNFVD 238

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081172 AT3G59210 "AT3G59210" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 4.9e-24, P = 4.9e-24
 Identities = 86/269 (31%), Positives = 136/269 (50%)

Query:    13 VDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGD 72
             +D+ S+D I+CLPD++LCQILS   TK+A  TS+LS RW++ +  V NL FD  L  +  
Sbjct:     1 MDDCSKDIINCLPDNLLCQILSNLSTKEAALTSLLSKRWRYLFALVPNLDFD-VLPSLHP 59

Query:    73 EVS--GITVAAFEKFVHSVLARTHPSSVEKFSLRCSY-LRSLGMFDYWVSSAISRNVREI 129
             EV+       +F  FV  VL       + KFSL+C   +    +F  W+ + +   V ++
Sbjct:    60 EVAMQDQDQTSFIDFVDRVLKLRGKDHINKFSLKCGDGIEDEDVFP-WILNTLRHGVSDL 118

Query:   130 EIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHL--MLQQPTNH 187
              + +       LP+ ++ S TL  L++       +    VC P+LKT +L  ++ +    
Sbjct:   119 SLHVSPSLVYWLPSKVFASKTLVRLKIGPKDGPRVKLRNVCLPKLKTLNLDSVVFEEGKI 178

Query:   188 LPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTI 247
                 L S CP L+ LSL     A +   +  +SS  LK   L   YC+HSS  N  +V+ 
Sbjct:   179 GFAKLLSGCPVLEELSLLNL--AWDRWDSCSVSSKILKRLTL---YCAHSSR-NPKSVSF 232

Query:   248 VAPNLEFLDITDDLAVSYAVHQLPSLHKA 276
               PN+ + + +D++A  Y      SL +A
Sbjct:   233 DTPNVVYFEYSDNIANKYPKVNFDSLVEA 261

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162489 AT5G22660 "AT5G22660" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 7.3e-24, P = 7.3e-24
 Identities = 96/314 (30%), Positives = 149/314 (47%)

Query:    13 VDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGD 72
             +    EDRIS LPD +L QILS  PT++AV TSILS RWK  W S   L  D ++    D
Sbjct:     7 IRRSGEDRISSLPDHLLSQILSNLPTENAVTTSILSTRWKDLWLSTPVL--DIDIDAFDD 64

Query:    73 EVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSY-LRSLGMFDY--WVSSAISRNVREI 129
               + I+ A   +F+ S       S + K  L+ S+ + ++ M+    W+  A+ R ++ +
Sbjct:    65 ATTFISFAT--RFLDSF----KDSCLHK--LQISFQMEAVDMWTIIPWIEDAVKRRIQHL 116

Query:   130 EIDLR-DHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQ-QPTNH 187
             E+D R DH    LP ++Y S +L  LRL  +  +      V  P LK  HL         
Sbjct:   117 EVDSRIDHMIDTLPLTVYLSESLVSLRL--HLVMLHRFVFVSLPNLKVMHLEENIYSYAE 174

Query:   188 LPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF--VLEVMYCSHSSAPNQHTV 245
                   S CP L+ L++      A     L +SS +L +   V++   C ++   +   V
Sbjct:   175 TMEKFISSCPVLEDLTVVRNVDEATEKV-LRVSSQSLNSLKLVIDSSKCWYNDDSDDWKV 233

Query:   246 TIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSE---WP---PIDRRPPVQLLAG 299
              I AP L +L + DD +VS+ ++ L S  KA   V F+    W      +R    + L G
Sbjct:   234 VIDAPQLVYLSLKDDQSVSFVINNLCSSAKADIKVSFNVSDIWDLEESFERSNVGKFLTG 293

Query:   300 MTKTKCLTLSAGVL 313
             ++  + +T+S   L
Sbjct:   294 LSSLRDMTISGTTL 307

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2081297 AT3G59190 "AT3G59190" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 83/273 (30%), Positives = 130/273 (47%)

Query:    11 RRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDEL--- 67
             +R+D+GS+D IS LPD++LC +LS  PT +A +TS+L+ RW+     V NL  D+ +   
Sbjct:     4 KRMDSGSKDIISNLPDALLCHVLSFLPTTEAASTSVLAKRWRFLLAFVPNLDLDNMIYDR 63

Query:    68 SVMGDEVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVR 127
               MG         +F+ FV  V+A    + ++KFSLRC         + WV   + R V 
Sbjct:    64 PKMGRRKRLELRKSFKLFVDRVMALQGNAPLKKFSLRCKIGSDPSRVNGWVLKVLDRGVE 123

Query:   128 EIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQ--PT 185
             E+++ +      PLP  +  + TL  L++      T+       P+LKT HL        
Sbjct:   124 ELDLYIASEYEYPLPPKVLMTKTLVSLKVSGTDEFTIDVGEFFLPKLKTLHLSAISFGDE 183

Query:   186 NHLPH-NLFSRCPCLQHL-SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQH 243
                P   L S C  L+ L  + + +      S   +SS +LK   ++   C +    N  
Sbjct:   184 GGPPFAKLISACHALEELVMIKMMWDYWEFCS---VSSPSLKRVSID---CENIDE-NPK 236

Query:   244 TVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKA 276
             +V+   PNL +L+ TD +AV Y      SL +A
Sbjct:   237 SVSFDTPNLVYLEFTDTVAVKYPKVNFDSLVEA 269

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

TAIR|locus:2015681 AT1G16930 "AT1G16930" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 1.6e-23, P = 1.6e-23
 Identities = 85/274 (31%), Positives = 132/274 (48%)

Query:    17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSG 76
             + DRIS LPDS+LCQILS   TK++V TS+LS RW++ W  V  L  D   +   D+V  
Sbjct:    13 NSDRISNLPDSLLCQILSDLSTKESVCTSVLSKRWRNLWLHVPVLDLDSN-NFPDDDV-- 69

Query:    77 ITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLR-SLGMFDYWVSSAISRNVREI----EI 131
                  F  FV+  L   +   +E+F L           F  W+++ I R V       E+
Sbjct:    70 -----FVSFVNRFLGSENEQHLERFKLIYEVNEHDASRFKSWINAVIKRRVCHFNVHNEV 124

Query:   132 DLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHL-MLQQPTNHLPH 190
             D  D E + +P S+Y    L  L+L  Y      P+ V  P +K  HL M++   +    
Sbjct:   125 D-DDDELVKMPLSLYSCERLVNLQL--YRVALDHPESVSLPCVKIMHLDMVKYDADSTLE 181

Query:   191 NLFSRCPCLQHLSLTVYFTAANPASNLI-ISSATLKTFVLEVMYCSHSSAPNQHTVTIVA 249
              L S CP L+ L++       N +  ++ + S +LK+F ++    S       H VTI A
Sbjct:   182 ILISGCPVLEELTIV---RDPNDSLEVVCVRSQSLKSFKID----SERYESQNHVVTIDA 234

Query:   250 PNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFS 283
             P LE++++ D  + S+ +H +    K    V+F+
Sbjct:   235 PRLEYMNLCDHRSDSFIIHNIGPFAKVDIDVIFN 268

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009125 AT1G06630 "AT1G06630" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 4.6e-23, P = 4.6e-23
 Identities = 93/314 (29%), Positives = 143/314 (45%)

Query:    11 RRVDNGSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVM 70
             +++D G  D I+ LPD IL +ILS+  TK AV+TS+LS +W+  +  V  L FDD +S M
Sbjct:     4 KKLDTGPRDAINWLPDEILGKILSLLATKQAVSTSVLSKKWRTLFKLVDTLEFDDSVSGM 63

Query:    71 GD-EVSGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLRS----LGMFDYWVSSAISRN 125
             G+ E S +   +F+  V   +A      + K SL+C   R           W+S+ + R 
Sbjct:    64 GEQEASYVFPESFKDLVDRTVALQCDYPIRKLSLKCHVGRDDEQRKACVGRWISNVVGRG 123

Query:   126 VREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTF--HLMLQQ 183
             V E+ + + D     L   +    TL  L L +   L   P  V  P LK    H +   
Sbjct:   124 VSEVVLRINDRGLHFLSPQLLTCKTLVKLTLGTRLFLGKLPSYVSLPSLKFLFIHSVFFD 183

Query:   184 PTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQH 243
                 L + L + CP ++ L    Y      +    ISS TLK   L V Y  H  +    
Sbjct:   184 DFGELSNVLLAGCPVVEAL----YLNQNGESMPYTISSPTLKR--LSVHYEYHFES---- 233

Query:   244 TVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT 303
              ++   PNLE+LD +D     Y    L SL +A  Y+   +   ++     +L+ G+   
Sbjct:   234 VISFDLPNLEYLDYSDYALYGYPQVNLESLVEA--YLNLDKAEHVESPDVTKLIMGIRNV 291

Query:   304 KCLTLS---AGVLH 314
             + L+LS    GV++
Sbjct:   292 EILSLSPDSVGVIY 305

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2136834 AT4G26340 "AT4G26340" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 4.9e-23, P = 4.9e-23
 Identities = 86/268 (32%), Positives = 135/268 (50%)

Query:    19 DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
             DRIS L D +L QILS  P KD VATS+LS RW+  W  V  L +DD     GD  S   
Sbjct:     2 DRISQLSDDLLLQILSFIPGKDVVATSLLSKRWQSLWMLVSELEYDDSYHT-GDYKS--- 57

Query:    79 VAAFEKFVHSVLARTHPSSVEKFSLR----CSYLRSLGMFDYWVSSAISRNVREIEIDLR 134
                F +FV+  L   +   ++   L     C  +  +G+   W+  A++R +R+++I++R
Sbjct:    58 ---FSQFVYRSLLSNNAPVIKHLHLNLGPDCPAI-DIGL---WIGFALTRRLRQLKINIR 110

Query:   135 DHER---IPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLML--QQPTNHLP 189
                      LP+S+Y S TLE LRL ++  L +P   VC P LK  HL     +    LP
Sbjct:   111 TSSNDASFSLPSSLYTSDTLETLRLINFVLLDVP-SSVCLPSLKVLHLKTVDYEDDASLP 169

Query:   190 HNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVA 249
               LF  CP L+ L +  +          ++ S   +  +++  Y       +++ + +  
Sbjct:   170 SLLFG-CPNLEELFVERHDQDLEMDVTFVVPSLR-RLSMIDKNY----GQCDRYVIDV-- 221

Query:   250 PNLEFLDITDDLAVSYAVHQLPSLHKAV 277
             P+L++L+ITDD AV Y V Q+ ++ + V
Sbjct:   222 PSLKYLNITDD-AV-YDVRQIENMPELV 247

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162499 AT5G22670 "AT5G22670" [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 9.1e-23, P = 9.1e-23
 Identities = 90/271 (33%), Positives = 130/271 (47%)

Query:    17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSG 76
             S+D IS LPD +LC+ILS  PTK AV TS+LS RWK    SV  L    E +V   E  G
Sbjct:     9 SQDSISLLPDDLLCRILSNLPTKVAVRTSVLSKRWKRFSLSVPLL----EFNV--SEFHG 62

Query:    77 ITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLR-SLGMFDYWVSSAISRNVREIEIDLRD 135
                  F + VH  L  +  + + K  L     +        W+ +A+ R V+ ++I    
Sbjct:    63 YY--EFARVVHGFLDTSRETCIHKLKLAFEKKQHDRSYLTQWIHNAVKRKVQHLDIGRWS 120

Query:   136 HERIPL-PASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQ-QPTNHLPHNL 192
             +    L P S+Y   TL  LRL +   ++LP  D V  PRLKT HL+    P + L  NL
Sbjct:   121 YLGQELIPHSLYTCETLVSLRLHN---VSLPDFDHVSLPRLKTMHLIDNIYPNDALLENL 177

Query:   193 FSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQH-TVTIVAPN 251
              S CP L+ L+++      N    L + S +LK+ +L +    +    +    V I AP 
Sbjct:   178 ISSCPVLEDLNVSR--DVENIVKVLRVRSLSLKSLILALDGDRYGDIEDDSWEVVIDAPR 235

Query:   252 LEFLDITDDLAVSYAVHQLPSLHKAVYYVMF 282
             L +L + DD + S+ +  + S  K    V F
Sbjct:   236 LSYLSLRDDQSKSFVLSSVTSPAKVDIDVTF 266

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162454 AT5G22700 "AT5G22700" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 99/311 (31%), Positives = 149/311 (47%)

Query:    19 DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMGDEVSGIT 78
             DRIS LPD +LCQILS  PTK+AV TSILS RW+  W S   L  D ++    D  + ++
Sbjct:     6 DRISSLPDELLCQILSNLPTKNAVTTSILSTRWRSIWLSTPVL--DIDIDAFDDATTFVS 63

Query:    79 VAA-FEKFVHSVLARTHPSSVEKFSL-RCSYLRSLGMFDYWVSSAISRNVREIEIDLRD- 135
              A+ F +F           SVE+  +  C+ +        W+  A++R ++ +E+D R  
Sbjct:    64 FASRFLEFSKDSCLHKFKLSVERDDVDMCTIMP-------WIQDAVNRRIQHLEVDCRFS 116

Query:   136 -H-ERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM--LQQPTNHLPHN 191
              H E + L  ++Y S TL  LRL  +F      + V  P LK  HL   +      L  N
Sbjct:   117 FHFEAVYL--TLYLSETLVSLRL--HFVTLHRYEFVSLPNLKVMHLEENIYYCLETL-EN 171

Query:   192 LFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHS---SAPNQHTVTIV 248
               S CP L+ L++ V          L + S +L +  L V+  S+       ++  V I 
Sbjct:   172 FISSCPVLEDLTV-VRIVDIITEKILRVRSRSLNSLKL-VLDSSNGWFIDDIDEWKVIID 229

Query:   249 APNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSE---WP-PI--DRRPPVQLLAGMTK 302
             AP L +L + DD + S+ +  L S  KA   V F+    W  P+  +R    +LL G++ 
Sbjct:   230 APRLAYLSLKDDQSASFVISNLGSSAKADIKVSFNVNDIWDLPVTFERSNVGKLLTGLSS 289

Query:   303 TKCLTLSAGVL 313
              + LT+S   L
Sbjct:   290 IRDLTISGTTL 300

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.84
KOG4341	483	consensus F-box protein containing LRR [General fu	99.45
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.87
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.43
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.31
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.29
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.23
KOG4341	483	consensus F-box protein containing LRR [General fu	98.22
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.05
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.84
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.59
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.47
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	97.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.23
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.15
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.07
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	96.94
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.51
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.44
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.39
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	96.36
KOG0617	264	consensus Ras suppressor protein (contains leucine	96.26
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.26
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.06
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.98
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.91
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.9
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.69
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	95.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	95.27
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	94.94
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	94.93
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.91
PRK15386	426	type III secretion protein GogB; Provisional	94.64
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.39
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	94.37
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	94.36
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	93.66
KOG0617	264	consensus Ras suppressor protein (contains leucine	93.65
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	93.1
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	92.91
PLN03150	623	hypothetical protein; Provisional	92.74
KOG2997	366	consensus F-box protein FBX9 [General function pre	92.31
PLN03150	623	hypothetical protein; Provisional	91.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	91.25
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.64
PRK15386	426	type III secretion protein GogB; Provisional	90.39
KOG2123	388	consensus Uncharacterized conserved protein [Funct	90.38
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	89.95
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	89.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	87.83
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	86.77
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	86.55
PF13013	109	F-box-like_2: F-box-like domain	85.34

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=3.5e-23  Score=173.36  Aligned_cols=239  Identities=17%  Similarity=0.157  Sum_probs=166.1

Q ss_pred             cCCCChHHHHHHhcCCChhhhhhhhccccccccccccce---eEEEecccccCCCccccccHHHHHHHHHHHHccCCCCC
Q 047644           21 ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVR---NLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSS   97 (314)
Q Consensus        21 ~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~   97 (314)
                      ++.|||||+..||+.|+.+|+.+++.|||||.++-+...   .++.......+             +...++ .+++   
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p-------------~~l~~l-~~rg---  160 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHP-------------DVLGRL-LSRG---  160 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccCh-------------hHHHHH-HhCC---
Confidence            789999999999999999999999999999998754433   23333333332             223333 3332   


Q ss_pred             eeEEEEEeccCCCcchHHHHHHH--HHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCc
Q 047644           98 VEKFSLRCSYLRSLGMFDYWVSS--AISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRL  174 (314)
Q Consensus        98 l~~l~l~~~~~~~~~~~~~w~~~--~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L  174 (314)
                      |..|++--.....+    +...+  ....+++++||+....+..++...+..|.+|+.|+|.+....|.. ...+...+|
T Consensus       161 V~v~Rlar~~~~~p----rlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L  236 (419)
T KOG2120|consen  161 VIVFRLARSFMDQP----RLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNL  236 (419)
T ss_pred             eEEEEcchhhhcCc----hhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccc
Confidence            55555542211111    11222  234579999999988777788888889999999999997555432 244578999


Q ss_pred             ceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeeccCCCCCcEE--EecCCcceEEEEeeeeCCC-CCCCcceEEEEcC
Q 047644          175 KTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI--ISSATLKTFVLEVMYCSHS-SAPNQHTVTIVAP  250 (314)
Q Consensus       175 ~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~--i~~~~Lk~L~i~~~~c~~~-~~~~~~~l~~~~p  250 (314)
                      ++|+|..|.. +..++.-++++|..|.+|+|++|....+. ..+.  --+++|+.|+++  .|..+ .......+.-.||
T Consensus       237 ~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNls--G~rrnl~~sh~~tL~~rcp  313 (419)
T KOG2120|consen  237 VRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLS--GYRRNLQKSHLSTLVRRCP  313 (419)
T ss_pred             eeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhh--hhHhhhhhhHHHHHHHhCC
Confidence            9999999987 99999999999999999999999762221 1122  256889999998  45432 2233455566889


Q ss_pred             CccEEEeeccccc----ceeecCCCCceeEEEeEEec
Q 047644          251 NLEFLDITDDLAV----SYAVHQLPSLHKAVYYVMFS  283 (314)
Q Consensus       251 ~L~~L~l~~~~~~----~~~~~~~p~L~~l~l~~~~~  283 (314)
                      +|..|+++++...    ...+-+++.|+++.++-|+.
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~  350 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD  350 (419)
T ss_pred             ceeeeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence            9999998887543    22345677777777776643

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.45  E-value=5.3e-16  Score=135.85  Aligned_cols=264  Identities=16%  Similarity=0.153  Sum_probs=160.7

Q ss_pred             CCCChHHHHHHhcCCChhhhhhhhccccccccc------cccceeEEEecccccCCCccccccHHHHHHHHHHHHccCCC
Q 047644           22 SCLPDSILCQILSVPPTKDAVATSILSPRWKHA------WTSVRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHP   95 (314)
Q Consensus        22 ~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~   95 (314)
                      -.||.|++..|||+|.++.+.+++++|+-|..+      |..+..+.|..+...              ..|.. +.++.+
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g--------------~VV~~-~~~Rcg  137 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDG--------------GVVEN-MISRCG  137 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCC--------------cceeh-Hhhhhc
Confidence            359999999999999999999999999999876      443333333222111              12333 333444


Q ss_pred             CCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeecccC---CCCcCC
Q 047644           96 SSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALTLP---PDGVCF  171 (314)
Q Consensus        96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~~~---~~~~~~  171 (314)
                      +.+++++++.+.......+.....  ..+++++|.+..|.......-.. .-.|.+|+.|.|.+|......   ....+|
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~--~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFAS--NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCCcchhhHHhh--hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            568999998887655543322211  23689999887775322222222 234899999999887543221   245689


Q ss_pred             CCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeeccCCC----------CCcEEE------------------ecC
Q 047644          172 PRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFTAANP----------ASNLII------------------SSA  222 (314)
Q Consensus       172 ~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~----------~~~~~i------------------~~~  222 (314)
                      ++|+.|++.+|.- ..++++.+..+|..|+++.+++|... .+          ...+.+                  .+.
T Consensus       216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~-~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~  294 (483)
T KOG4341|consen  216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL-ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH  294 (483)
T ss_pred             hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc-cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence            9999999999866 77788888888888888888877651 11          001111                  134


Q ss_pred             CcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-----ceeecCCCCceeEEEeEEeccCCCCCCCChHHHh
Q 047644          223 TLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-----SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLL  297 (314)
Q Consensus       223 ~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-----~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll  297 (314)
                      .|+.|+.+  .|.+.++.....+.-++++|+.|.+.++.-.     ...--+.+.|+++++.-+..-    ....+.++-
T Consensus       295 ~lq~l~~s--~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~----~d~tL~sls  368 (483)
T KOG4341|consen  295 ALQVLCYS--SCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLI----TDGTLASLS  368 (483)
T ss_pred             Hhhhhccc--CCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccccccee----hhhhHhhhc
Confidence            45555554  4555444434445556677777777766421     111223556666555443221    022366666


Q ss_pred             hcCCCceEEEee
Q 047644          298 AGMTKTKCLTLS  309 (314)
Q Consensus       298 ~~~~~l~~L~l~  309 (314)
                      .+|+.++.|.|+
T Consensus       369 ~~C~~lr~lsls  380 (483)
T KOG4341|consen  369 RNCPRLRVLSLS  380 (483)
T ss_pred             cCCchhccCChh
Confidence            677777777766

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.87  E-value=1.1e-09  Score=68.41  Aligned_cols=35  Identities=37%  Similarity=0.620  Sum_probs=31.0

Q ss_pred             cCCCChHHHHHHhcCCChhhhhhhhcccccccccc
Q 047644           21 ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAW   55 (314)
Q Consensus        21 ~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~   55 (314)
                      |..||+|++.+||++|+.+|+++++.|||+|+++.
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~   35 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIA   35 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHH
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999865

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.43  E-value=4.8e-08  Score=61.21  Aligned_cols=38  Identities=42%  Similarity=0.569  Sum_probs=31.7

Q ss_pred             cCCCChHHHHHHhcCCChhhhhhhhccccccccccccc
Q 047644           21 ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSV   58 (314)
Q Consensus        21 ~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~~   58 (314)
                      +.+||+|++.+||++|+.+|.++++.|||+|+++....
T Consensus         3 ~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    3 LSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred             HHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence            67899999999999999999999999999999876543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.38  E-value=5.3e-07  Score=92.36  Aligned_cols=82  Identities=20%  Similarity=0.189  Sum_probs=39.2

Q ss_pred             CCceEEEEEecCCCccccCCccc-ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIY-RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~-~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      ..++.|+|+.+.. ...+|..++ .+++|++|+|+++.+.+.. ....+++|++|+|.++.++.. +..-+..+++|++|
T Consensus        93 ~~L~~L~Ls~n~~-~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p~~~l~~L~~L~Ls~n~~~~~-~p~~~~~l~~L~~L  169 (968)
T PLN00113         93 PYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSI-PRGSIPNLETLDLSNNMLSGE-IPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCEEECCCCcc-CCcCChHHhccCCCCCEEECcCCcccccc-CccccCCCCEEECcCCccccc-CChHHhcCCCCCEE
Confidence            3566666654432 123444444 4566666666555433221 223455556665555554221 22234455555555


Q ss_pred             eeeeee
Q 047644          203 SLTVYF  208 (314)
Q Consensus       203 ~L~~c~  208 (314)
                      +|.+|.
T Consensus       170 ~L~~n~  175 (968)
T PLN00113        170 DLGGNV  175 (968)
T ss_pred             ECccCc
Confidence            555553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=5.3e-08  Score=86.70  Aligned_cols=176  Identities=18%  Similarity=0.088  Sum_probs=113.6

Q ss_pred             CceEEEEEec-CCCccccCCcccccCCeeEEEEcceeecccC--CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          125 NVREIEIDLR-DHERIPLPASIYRSITLEVLRLRSYFALTLP--PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       125 ~l~~L~l~~~-~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      ++++|+|+-. -..+..+...+...++|+.|+|+...+.-..  .....+++||+|.|.+|.++..++.+++..||.||.
T Consensus       147 ~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~  226 (505)
T KOG3207|consen  147 NVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEV  226 (505)
T ss_pred             cceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHH
Confidence            5666666542 1223333334445678888888776332221  133478999999999999999999999999999999


Q ss_pred             eeeeeeeccCCCCCcEEE---ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccccee---------ecC
Q 047644          202 LSLTVYFTAANPASNLII---SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYA---------VHQ  269 (314)
Q Consensus       202 L~L~~c~~~~~~~~~~~i---~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~---------~~~  269 (314)
                      |.|.+...   . .....   ...+|+.|+++   -+...+.+........|+|+-|.+..+...++-         ...
T Consensus       227 L~L~~N~~---~-~~~~~~~~i~~~L~~LdLs---~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~  299 (505)
T KOG3207|consen  227 LYLEANEI---I-LIKATSTKILQTLQELDLS---NNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT  299 (505)
T ss_pred             hhhhcccc---c-ceecchhhhhhHHhhcccc---CCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence            99998843   2 11111   34689999997   444444444566778899999998876554221         234


Q ss_pred             CCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCC
Q 047644          270 LPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGV  312 (314)
Q Consensus       270 ~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~  312 (314)
                      +|+|+.+.+.-....+.     ...+-+..+.|++.|.+..|.
T Consensus       300 f~kL~~L~i~~N~I~~w-----~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDW-----RSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             cccceeeecccCccccc-----cccchhhccchhhhhhccccc
Confidence            68888887776533211     233445566666666655543

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.29  E-value=2.8e-07  Score=55.49  Aligned_cols=34  Identities=44%  Similarity=0.639  Sum_probs=31.5

Q ss_pred             CChHHHHHHhcCCChhhhhhhhcccccccccccc
Q 047644           24 LPDSILCQILSVPPTKDAVATSILSPRWKHAWTS   57 (314)
Q Consensus        24 LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~   57 (314)
                      ||+|++.+||++|+.+|+.+++.|||+|+.+...
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            7999999999999999999999999999987543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.23  E-value=1.5e-06  Score=89.03  Aligned_cols=82  Identities=18%  Similarity=0.148  Sum_probs=39.4

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|++..+... ..+|..+..+++|++|.|+++.... .|.....+++|+.|+|.+..+... +...+..+++|++|
T Consensus       164 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L  241 (968)
T PLN00113        164 SSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSLNHL  241 (968)
T ss_pred             CCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCCCEE
Confidence            46777777655321 1344445555666666665553322 222334455555555555544221 22223444555555


Q ss_pred             eeeee
Q 047644          203 SLTVY  207 (314)
Q Consensus       203 ~L~~c  207 (314)
                      ++.+|
T Consensus       242 ~L~~n  246 (968)
T PLN00113        242 DLVYN  246 (968)
T ss_pred             ECcCc
Confidence            55544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.22  E-value=5.3e-08  Score=86.24  Aligned_cols=176  Identities=14%  Similarity=0.114  Sum_probs=123.5

Q ss_pred             ceEEEEEecCC-CccccCCcccccCCeeEEEEcceeecccC---CCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCcccc
Q 047644          126 VREIEIDLRDH-ERIPLPASIYRSITLEVLRLRSYFALTLP---PDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQ  200 (314)
Q Consensus       126 l~~L~l~~~~~-~~~~l~~~~~~c~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le  200 (314)
                      +.+++++-|.. +...+....+.|..|++|..++|...+..   +...++++|+.|-|.+|.- ++..+..+-.+||.||
T Consensus       270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le  349 (483)
T KOG4341|consen  270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE  349 (483)
T ss_pred             hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence            45555444432 12223344456899999999998654321   2456789999999999975 9999999999999999


Q ss_pred             ceeeeeeeccCC--CCCcEEEecCCcceEEEEeeeeCCCCCCCcceE---EEEcCCccEEEeeccccc----ceeecCCC
Q 047644          201 HLSLTVYFTAAN--PASNLIISSATLKTFVLEVMYCSHSSAPNQHTV---TIVAPNLEFLDITDDLAV----SYAVHQLP  271 (314)
Q Consensus       201 ~L~L~~c~~~~~--~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l---~~~~p~L~~L~l~~~~~~----~~~~~~~p  271 (314)
                      .|.+..|....+  + ..+..+++.|+.|.++  .|...++.+...+   .-....|+.+.++.+...    ...+..++
T Consensus       350 ~l~~e~~~~~~d~tL-~sls~~C~~lr~lsls--hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~  426 (483)
T KOG4341|consen  350 RLDLEECGLITDGTL-ASLSRNCPRLRVLSLS--HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR  426 (483)
T ss_pred             hhcccccceehhhhH-hhhccCCchhccCChh--hhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence            999999965221  2 3456788999999998  8887766543332   335677888888888655    12355688


Q ss_pred             CceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEe
Q 047644          272 SLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTL  308 (314)
Q Consensus       272 ~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l  308 (314)
                      .|+.+++.-+...    ....+..+-..+||++...+
T Consensus       427 ~Leri~l~~~q~v----tk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  427 NLERIELIDCQDV----TKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             ccceeeeechhhh----hhhhhHHHHhhCccceehhh
Confidence            8988776554221    14468889999999987654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=3.8e-07  Score=77.73  Aligned_cols=149  Identities=18%  Similarity=0.169  Sum_probs=102.1

Q ss_pred             hCCceEEEEEecCCC-ccccCCcccccCCeeEEEEcceeecccC---CCCcCCCCcceEEeeeEEc--CCCcHHHHhcCC
Q 047644          123 SRNVREIEIDLRDHE-RIPLPASIYRSITLEVLRLRSYFALTLP---PDGVCFPRLKTFHLMLQQP--TNHLPHNLFSRC  196 (314)
Q Consensus       123 ~~~l~~L~l~~~~~~-~~~l~~~~~~c~~L~~L~L~~~~~~~~~---~~~~~~~~L~~L~L~~~~~--~~~~l~~ll~~c  196 (314)
                      .+++++++++.|... ...+...+.+|+.|..|+|+.|..+...   ....--+.|+.|+|.|+.-  .+..+..+...|
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rc  312 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRC  312 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhC
Confidence            358999999998643 3334445567999999999998554321   1223468999999999965  677899999999


Q ss_pred             ccccceeeeeeeccCCCCCc-EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCC
Q 047644          197 PCLQHLSLTVYFTAANPASN-LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPS  272 (314)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~-~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~  272 (314)
                      |.|-+|+|++|....+. -. .....+.|++|.++  .|....-. .....-+.|.|.||++.|+...   ......+|.
T Consensus       313 p~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSls--RCY~i~p~-~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~  388 (419)
T KOG2120|consen  313 PNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLS--RCYDIIPE-TLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSH  388 (419)
T ss_pred             CceeeeccccccccCch-HHHHHHhcchheeeehh--hhcCCChH-HeeeeccCcceEEEEeccccCchHHHHHHHhCcc
Confidence            99999999999653221 11 11256789999998  77543211 1222348899999999999876   222344555


Q ss_pred             cee
Q 047644          273 LHK  275 (314)
Q Consensus       273 L~~  275 (314)
                      |+.
T Consensus       389 lki  391 (419)
T KOG2120|consen  389 LKI  391 (419)
T ss_pred             ccc
Confidence            443

>PLN03210 Resistant to P

Probab=97.92  E-value=1.8e-05  Score=82.26  Aligned_cols=62  Identities=18%  Similarity=0.083  Sum_probs=27.4

Q ss_pred             ccccCCeeEEEEcceeec-ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          145 IYRSITLEVLRLRSYFAL-TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       145 ~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      +..+++|+.|+|+++... ..| ....+++|++|.|.+|..- ..+..-+..++.|+.|++.+|.
T Consensus       630 ~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        630 VHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             cccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCC
Confidence            334455555555544222 222 3334555555555554321 1122233445555555555553

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.89  E-value=4.2e-07  Score=80.86  Aligned_cols=36  Identities=19%  Similarity=0.037  Sum_probs=14.8

Q ss_pred             CCcceEEeeeEEcCCCcHHHHh---cCCccccceeeeee
Q 047644          172 PRLKTFHLMLQQPTNHLPHNLF---SRCPCLQHLSLTVY  207 (314)
Q Consensus       172 ~~L~~L~L~~~~~~~~~l~~ll---~~cp~Le~L~L~~c  207 (314)
                      ++|++|+|.++.+++..+..+.   ..++.|++|++.+|
T Consensus       165 ~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  203 (319)
T cd00116         165 RDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN  203 (319)
T ss_pred             CCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence            3444444444444333322222   22334444444444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=97.84  E-value=2.5e-05  Score=81.27  Aligned_cols=56  Identities=25%  Similarity=0.294  Sum_probs=24.9

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-ccCCCCcCCCCcceEEeeeE
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-TLPPDGVCFPRLKTFHLMLQ  182 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~  182 (314)
                      +++.|+|..|.. ...+|..+..+++|+.|.+++|... ..| ....+++|+.|+|.+|
T Consensus       658 ~Le~L~L~~c~~-L~~lp~si~~L~~L~~L~L~~c~~L~~Lp-~~i~l~sL~~L~Lsgc  714 (1153)
T PLN03210        658 NLETLKLSDCSS-LVELPSSIQYLNKLEDLDMSRCENLEILP-TGINLKSLYRLNLSGC  714 (1153)
T ss_pred             cccEEEecCCCC-ccccchhhhccCCCCEEeCCCCCCcCccC-CcCCCCCCCEEeCCCC
Confidence            444444443321 1234444444555555555555322 222 2224555555555544

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.67  E-value=1.7e-06  Score=76.96  Aligned_cols=182  Identities=13%  Similarity=0.017  Sum_probs=114.9

Q ss_pred             CCceEEEEEecCCCccccCCccccc---CCeeEEEEcceeecccC-----CCCcCC-CCcceEEeeeEEcCCCc---HHH
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRS---ITLEVLRLRSYFALTLP-----PDGVCF-PRLKTFHLMLQQPTNHL---PHN  191 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c---~~L~~L~L~~~~~~~~~-----~~~~~~-~~L~~L~L~~~~~~~~~---l~~  191 (314)
                      .++++|++..+.... ..+..+...   ++|++|.++++...+..     .....+ ++|+.|+|.++.++...   +..
T Consensus        81 ~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          81 CGLQELDLSDNALGP-DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             CceeEEEccCCCCCh-hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            589999998765431 122222222   45999999988554210     122345 89999999999986433   445


Q ss_pred             HhcCCccccceeeeeeeccCCCCCc--EE---EecCCcceEEEEeeeeCCCCCCCc---ceEEEEcCCccEEEeeccccc
Q 047644          192 LFSRCPCLQHLSLTVYFTAANPASN--LI---ISSATLKTFVLEVMYCSHSSAPNQ---HTVTIVAPNLEFLDITDDLAV  263 (314)
Q Consensus       192 ll~~cp~Le~L~L~~c~~~~~~~~~--~~---i~~~~Lk~L~i~~~~c~~~~~~~~---~~l~~~~p~L~~L~l~~~~~~  263 (314)
                      .+..|+.|++|++.+|.. .+. ..  +.   ...++|+.|+++  +|.. ...+.   ....-..|+|++|+++++...
T Consensus       160 ~~~~~~~L~~L~l~~n~l-~~~-~~~~l~~~l~~~~~L~~L~L~--~n~i-~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         160 ALRANRDLKELNLANNGI-GDA-GIRALAEGLKANCNLEVLDLN--NNGL-TDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHhCCCcCEEECcCCCC-chH-HHHHHHHHHHhCCCCCEEecc--CCcc-ChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence            567888999999999865 321 11  11   134689999997  4532 21111   222346799999999997544


Q ss_pred             ce---ee-----cCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          264 SY---AV-----HQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       264 ~~---~~-----~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..   .+     ...+.|+++++..+.....  ....+.+.+..+++++.|.++.|.+
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~--~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDD--GAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcH--HHHHHHHHHhcCCCccEEECCCCCC
Confidence            11   11     1237899999987632110  0234566777888999999999876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.65  E-value=3.7e-06  Score=77.91  Aligned_cols=60  Identities=22%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             EcCCccEEEeeccccc------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          248 VAPNLEFLDITDDLAV------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       248 ~~p~L~~L~l~~~~~~------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ...+|+.|++......      ...+..+|+|+++.+.....      .....+-..++.++++|.|.+|.|
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNql------k~I~krAfsgl~~LE~LdL~~Nai  428 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQL------KSIPKRAFSGLEALEHLDLGDNAI  428 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCcee------eecchhhhccCcccceecCCCCcc
Confidence            3445555555443221      22344466666666654432      122344566677777777766654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.59  E-value=8.7e-06  Score=72.88  Aligned_cols=180  Identities=15%  Similarity=0.124  Sum_probs=99.8

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeeccc---CCCCcCCCCcceEEeeeEEc---CCCcHHHHhcCCcc
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTL---PPDGVCFPRLKTFHLMLQQP---TNHLPHNLFSRCPC  198 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~---~~~~l~~ll~~cp~  198 (314)
                      .++++.|+.+..........+-.|++++.|+|+..-+..+   ......+|+|+.|+|+.-.+   .+.....   ..+.
T Consensus       122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~  198 (505)
T KOG3207|consen  122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSH  198 (505)
T ss_pred             hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhh
Confidence            5666666665433222112344577777777776533222   12345677777777777655   2211122   4566


Q ss_pred             ccceeeeeeecc-CCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEE-EcCCccEEEeeccccc----ceeecCCCC
Q 047644          199 LQHLSLTVYFTA-ANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTI-VAPNLEFLDITDDLAV----SYAVHQLPS  272 (314)
Q Consensus       199 Le~L~L~~c~~~-~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~-~~p~L~~L~l~~~~~~----~~~~~~~p~  272 (314)
                      |+.|.|..|..- .++ ..+....|+|+.|.+.   .+....  .+.... -.-.|+.|++++....    .+..+.+|.
T Consensus       199 lK~L~l~~CGls~k~V-~~~~~~fPsl~~L~L~---~N~~~~--~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDV-QWILLTFPSLEVLYLE---ANEIIL--IKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hheEEeccCCCCHHHH-HHHHHhCCcHHHhhhh---cccccc--eecchhhhhhHHhhccccCCcccccccccccccccc
Confidence            677777777430 122 2334466777777775   221100  011111 2234777777776544    244677888


Q ss_pred             ceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          273 LHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       273 L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      |..+.+..+....-.+.+.....-...+++++.|.+..|.+
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            88888877644332222334455677899999999998876

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.47  E-value=2.5e-06  Score=80.16  Aligned_cols=172  Identities=19%  Similarity=0.123  Sum_probs=108.8

Q ss_pred             CCceEEEEEecCCCc-cccCCcccccCCeeEEEEcce-eeccc-----CCCCcCCCCcceEEeeeEE-cCCCcHHHHhcC
Q 047644          124 RNVREIEIDLRDHER-IPLPASIYRSITLEVLRLRSY-FALTL-----PPDGVCFPRLKTFHLMLQQ-PTNHLPHNLFSR  195 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~-~~l~~~~~~c~~L~~L~L~~~-~~~~~-----~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~  195 (314)
                      .+++++.+..+.... ..+......|+.|+.|.++++ .....     ......+++|+.|+|.++. ++|.++..+...
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~  267 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR  267 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence            466777776553222 123445567889999999873 22111     1144567889999999998 588889999889


Q ss_pred             CccccceeeeeeeccCCCCCc--EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc---c-------
Q 047644          196 CPCLQHLSLTVYFTAANPASN--LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA---V-------  263 (314)
Q Consensus       196 cp~Le~L~L~~c~~~~~~~~~--~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~---~-------  263 (314)
                      ||.||+|.+..|...++. ..  +.-.++.|++|++.  +|...++.+...+...+|+|+.|.+.+...   .       
T Consensus       268 c~~L~~L~l~~c~~lt~~-gl~~i~~~~~~L~~L~l~--~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~  344 (482)
T KOG1947|consen  268 CPNLETLSLSNCSNLTDE-GLVSIAERCPSLRELDLS--GCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSG  344 (482)
T ss_pred             CCCcceEccCCCCccchh-HHHHHHHhcCcccEEeee--cCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHH
Confidence            999999998888742333 22  22366889999998  687665544555555677777766655432   0       


Q ss_pred             ----------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCc
Q 047644          264 ----------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT  303 (314)
Q Consensus       264 ----------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l  303 (314)
                                ......+|.++++.+..+. ..    .......+.+|+++
T Consensus       345 ~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~----~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  345 LLTLTSDDLAELILRSCPKLTDLSLSYCG-IS----DLGLELSLRGCPNL  389 (482)
T ss_pred             hhccCchhHhHHHHhcCCCcchhhhhhhh-cc----CcchHHHhcCCccc
Confidence                      1223446666666666553 21    22235677777777

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=97.46  E-value=0.00012  Score=38.97  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=22.9

Q ss_pred             CcceEEeeeEEc-CCCcHHHHhcCCc
Q 047644          173 RLKTFHLMLQQP-TNHLPHNLFSRCP  197 (314)
Q Consensus       173 ~L~~L~L~~~~~-~~~~l~~ll~~cp  197 (314)
                      +||+|+|.++.+ +++.++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999 6668999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.36  E-value=1.8e-05  Score=74.37  Aligned_cols=135  Identities=21%  Similarity=0.196  Sum_probs=86.5

Q ss_pred             CCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeee-eccCCCC---CcEEEecCCcceEEEEeeeeCCCCCCCcce
Q 047644          170 CFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVY-FTAANPA---SNLIISSATLKTFVLEVMYCSHSSAPNQHT  244 (314)
Q Consensus       170 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c-~~~~~~~---~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~  244 (314)
                      .+++|+.|.+.++.. ++..+..+...||.|++|.+.+| .......   ..+...+++|++|++.  +|...++.+...
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~--~~~~isd~~l~~  263 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS--GCGLVTDIGLSA  263 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh--hhhccCchhHHH
Confidence            378888888888865 66667788888888888888873 2211110   1223355778888887  666555555666


Q ss_pred             EEEEcCCccEEEeeccccc-----ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeec
Q 047644          245 VTIVAPNLEFLDITDDLAV-----SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSA  310 (314)
Q Consensus       245 l~~~~p~L~~L~l~~~~~~-----~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~  310 (314)
                      +.-.+|+|++|.+.++...     ......+|.|+++++..+....    ...+..+..+|++++.|.+..
T Consensus       264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~----d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT----DSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch----HHHHHHHHHhCcchhhhhhhh
Confidence            6666888888887766632     1233457888888888653321    333566677788777766543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.23  E-value=3.7e-05  Score=75.00  Aligned_cols=61  Identities=20%  Similarity=0.206  Sum_probs=41.4

Q ss_pred             CCeeEEEEcceeec--ccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          149 ITLEVLRLRSYFAL--TLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       149 ~~L~~L~L~~~~~~--~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      .+|++|++++...+  ++| ....-||+|++|.+.+..+..+++..+..++|+|..|+++++..
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI  185 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI  185 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc
Confidence            46666666664221  222 13346888888888888885555888888888888888888755

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.22  E-value=0.00024  Score=66.25  Aligned_cols=149  Identities=13%  Similarity=0.137  Sum_probs=73.4

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      .++.|+++.+...... +..++..++|+.+++........|.......+|+.|.|.+-.++.-.-+ -++.-|.||.|+|
T Consensus        79 ~t~~LdlsnNkl~~id-~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se-~L~~l~alrslDL  156 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHID-FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSE-ELSALPALRSLDL  156 (873)
T ss_pred             ceeeeeccccccccCc-HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHH-HHHhHhhhhhhhh
Confidence            3445555554321111 1234556777777777665555563444455577777777766322212 2345577777777


Q ss_pred             eeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeEEEeE
Q 047644          205 TVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYYV  280 (314)
Q Consensus       205 ~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~  280 (314)
                      +.... ..+ ..-.. ...++|+|+++   .+..+.-+...+. ...+|.+|.++.....   .-.+.++|.|+.+++..
T Consensus       157 SrN~i-s~i-~~~sfp~~~ni~~L~La---~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr  230 (873)
T KOG4194|consen  157 SRNLI-SEI-PKPSFPAKVNIKKLNLA---SNRITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR  230 (873)
T ss_pred             hhchh-hcc-cCCCCCCCCCceEEeec---ccccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhhhccc
Confidence            76543 222 11111 23567777775   3332222111111 1225666666654432   22345566666666655


Q ss_pred             E
Q 047644          281 M  281 (314)
Q Consensus       281 ~  281 (314)
                      .
T Consensus       231 N  231 (873)
T KOG4194|consen  231 N  231 (873)
T ss_pred             c
Confidence            4

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.15  E-value=2.9e-05  Score=62.65  Aligned_cols=80  Identities=26%  Similarity=0.227  Sum_probs=25.7

Q ss_pred             CceEEEEEecCCCccccCCccc-ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIY-RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~-~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      ++++|+|..+.....   ..+. .+.+|+.|+|+++.....+ +...+++|++|.+.+-.++.-. ..+...||+|++|.
T Consensus        20 ~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELY   94 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-C-HHHHHH-TT--EEE
T ss_pred             ccccccccccccccc---cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEE
Confidence            567777776643322   2233 3578899999888776665 6667888999988888874421 23445689999999


Q ss_pred             eeeeec
Q 047644          204 LTVYFT  209 (314)
Q Consensus       204 L~~c~~  209 (314)
                      +.+...
T Consensus        95 L~~N~I  100 (175)
T PF14580_consen   95 LSNNKI  100 (175)
T ss_dssp             -TTS--
T ss_pred             CcCCcC
Confidence            887755

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.07  E-value=7.4e-05  Score=65.23  Aligned_cols=221  Identities=15%  Similarity=0.054  Sum_probs=107.1

Q ss_pred             HHHHHHHHccCCCCCeeEEEEEeccCCCcchHHHHHHHHHh--CCceEEEEEe--cCCCccccC-------CcccccCCe
Q 047644           83 EKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAIS--RNVREIEIDL--RDHERIPLP-------ASIYRSITL  151 (314)
Q Consensus        83 ~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~w~~~~~~--~~l~~L~l~~--~~~~~~~l~-------~~~~~c~~L  151 (314)
                      ..-|-..+.....  +.++.++  ..+-+.-..+|+..+.+  +.+++.+++-  ..+....+|       ..+..|++|
T Consensus        19 ~~~v~~~~~~~~s--~~~l~ls--gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L   94 (382)
T KOG1909|consen   19 EKDVEEELEPMDS--LTKLDLS--GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKL   94 (382)
T ss_pred             hhhHHHHhcccCc--eEEEecc--CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCce
Confidence            3444445544433  5555443  33344556788877765  3566666542  122222222       234456666


Q ss_pred             eEEEEcceeecc-cC----CCCcCCCCcceEEeeeEEcCCCc------------HHHHhcCCccccceeeeeeeccCCCC
Q 047644          152 EVLRLRSYFALT-LP----PDGVCFPRLKTFHLMLQQPTNHL------------PHNLFSRCPCLQHLSLTVYFTAANPA  214 (314)
Q Consensus       152 ~~L~L~~~~~~~-~~----~~~~~~~~L~~L~L~~~~~~~~~------------l~~ll~~cp~Le~L~L~~c~~~~~~~  214 (314)
                      +.|+|+.+.+.. .+    ....++..|++|.|.+|.++..+            ..+.+..-|.|+.+....... .+. 
T Consensus        95 ~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl-en~-  172 (382)
T KOG1909|consen   95 QKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL-ENG-  172 (382)
T ss_pred             eEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc-ccc-
Confidence            666666653321 11    01123556666666666553221            112223344444444443332 111 


Q ss_pred             CcEEE-----ecCCcceEEEEeeeeCCCCCCCcce---EEEEcCCccEEEeeccccc-------ceeecCCCCceeEEEe
Q 047644          215 SNLII-----SSATLKTFVLEVMYCSHSSAPNQHT---VTIVAPNLEFLDITDDLAV-------SYAVHQLPSLHKAVYY  279 (314)
Q Consensus       215 ~~~~i-----~~~~Lk~L~i~~~~c~~~~~~~~~~---l~~~~p~L~~L~l~~~~~~-------~~~~~~~p~L~~l~l~  279 (314)
                      +...+     .+++|+.+.+.   -+-....+...   -.-++|+|+.|++.+....       ...+...|.|+++.++
T Consensus       173 ga~~~A~~~~~~~~leevr~~---qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~  249 (382)
T KOG1909|consen  173 GATALAEAFQSHPTLEEVRLS---QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG  249 (382)
T ss_pred             cHHHHHHHHHhccccceEEEe---cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence            11111     34677777764   21111111111   1137888888888876543       2234556778888888


Q ss_pred             EEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          280 VMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       280 ~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      .|...... ...-+..+-.+.++++.|.+.+|.|
T Consensus       250 dcll~~~G-a~a~~~al~~~~p~L~vl~l~gNeI  282 (382)
T KOG1909|consen  250 DCLLENEG-AIAFVDALKESAPSLEVLELAGNEI  282 (382)
T ss_pred             cccccccc-HHHHHHHHhccCCCCceeccCcchh
Confidence            77554211 0111334455677777777777654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=96.94  E-value=3.3e-05  Score=62.33  Aligned_cols=125  Identities=21%  Similarity=0.223  Sum_probs=38.0

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCc-EEEecCCcc
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASN-LIISSATLK  225 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~-~~i~~~~Lk  225 (314)
                      .+..+++|+|.++...........+.+|+.|+|++..+..  +.. +..++.|++|.+.+..- ..+ .. +.-..|+|+
T Consensus        17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~-l~~L~~L~~L~L~~N~I-~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITK--LEG-LPGLPRLKTLDLSNNRI-SSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S--CHHHHHH-TT--
T ss_pred             cccccccccccccccccccchhhhhcCCCEEECCCCCCcc--ccC-ccChhhhhhcccCCCCC-Ccc-ccchHHhCCcCC
Confidence            4557788888887555543233357888888888887732  222 34568888888887755 323 11 111357788


Q ss_pred             eEEEEeeeeCCCCC-CCcceEEEEcCCccEEEeeccccc------ceeecCCCCceeEEEeE
Q 047644          226 TFVLEVMYCSHSSA-PNQHTVTIVAPNLEFLDITDDLAV------SYAVHQLPSLHKAVYYV  280 (314)
Q Consensus       226 ~L~i~~~~c~~~~~-~~~~~l~~~~p~L~~L~l~~~~~~------~~~~~~~p~L~~l~l~~  280 (314)
                      .|.+.   -+...+ .+...+ -.+|+|+.|++.|.+..      .+.+..+|+|+.+|-..
T Consensus        92 ~L~L~---~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   92 ELYLS---NNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             EEE-T---TS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             EEECc---CCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            88774   222111 111111 15677888888776543      23455677777766544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.93  E-value=0.00012  Score=63.94  Aligned_cols=185  Identities=15%  Similarity=0.127  Sum_probs=116.6

Q ss_pred             CCceEEEEEecCCCcc---ccCCcccccCCeeEEEEcceeecc----cC-------CCCcCCCCcceEEeeeEEcC---C
Q 047644          124 RNVREIEIDLRDHERI---PLPASIYRSITLEVLRLRSYFALT----LP-------PDGVCFPRLKTFHLMLQQPT---N  186 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~---~l~~~~~~c~~L~~L~L~~~~~~~----~~-------~~~~~~~~L~~L~L~~~~~~---~  186 (314)
                      ..+.+++|+.++....   .+...+.+-+.|+...++..+...    .|       +....+|.|+.|+|++-.++   .
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            4789999988754321   222334445688888887753321    11       12346889999999999984   3


Q ss_pred             CcHHHHhcCCccccceeeeeeeccCCCCC-c-----------EEE-ecCCcceEEEEeeeeCCCCCCCcc---eEEEEcC
Q 047644          187 HLPHNLFSRCPCLQHLSLTVYFTAANPAS-N-----------LII-SSATLKTFVLEVMYCSHSSAPNQH---TVTIVAP  250 (314)
Q Consensus       187 ~~l~~ll~~cp~Le~L~L~~c~~~~~~~~-~-----------~~i-~~~~Lk~L~i~~~~c~~~~~~~~~---~l~~~~p  250 (314)
                      ..+..++++|..|++|.|.+|.. ...++ .           -.+ ..+.|+.+...   -+...+.+..   ...-..|
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Gl-g~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~---rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGL-GPEAGGRLGRALFELAVNKKAASKPKLRVFICG---RNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCC-ChhHHHHHHHHHHHHHHHhccCCCcceEEEEee---ccccccccHHHHHHHHHhcc
Confidence            56788999999999999999965 32100 1           111 44678877764   2222222211   1122458


Q ss_pred             CccEEEeeccccc-------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          251 NLEFLDITDDLAV-------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       251 ~L~~L~l~~~~~~-------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      +|+.+++.-....       ...+..+|.|+.+++.-.+-....  ...+...+..+++++.|.++++-|+
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~eg--s~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEG--SVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHH--HHHHHHHhcccchheeecccccccc
Confidence            9999888754322       234566889999988766332111  3346778888899999998887654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.51  E-value=0.00098  Score=43.71  Aligned_cols=57  Identities=32%  Similarity=0.408  Sum_probs=31.6

Q ss_pred             CeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644          150 TLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       150 ~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c  207 (314)
                      +|++|.++++.....|. .+.++++|+.|+|.+..+..- -...+.++|+|++|+++++
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCC
Confidence            56666666664444442 334566666666666655211 1234566677777666655

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.44  E-value=0.0003  Score=68.76  Aligned_cols=107  Identities=20%  Similarity=0.184  Sum_probs=63.8

Q ss_pred             ccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEE-EecCCc
Q 047644          147 RSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI-ISSATL  224 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~-i~~~~L  224 (314)
                      ..++|+.|.|++.....+|+ ....++.|++|+|+|-.+..  +..=+..|+.|+.|....... .   .... ...+.|
T Consensus       381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l-~---~fPe~~~l~qL  454 (1081)
T KOG0618|consen  381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQL-L---SFPELAQLPQL  454 (1081)
T ss_pred             cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHHhhcCCce-e---echhhhhcCcc
Confidence            34677777776665544442 33456667777777766533  334455777777776655432 1   1111 256889


Q ss_pred             ceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc
Q 047644          225 KTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV  263 (314)
Q Consensus       225 k~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~  263 (314)
                      +.++++   |++....... ...-.|+|++|+++|....
T Consensus       455 ~~lDlS---~N~L~~~~l~-~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  455 KVLDLS---CNNLSEVTLP-EALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             eEEecc---cchhhhhhhh-hhCCCcccceeeccCCccc
Confidence            999998   8775432111 1112289999999998754

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.39  E-value=0.002  Score=63.69  Aligned_cols=55  Identities=18%  Similarity=0.227  Sum_probs=29.9

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP  184 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~  184 (314)
                      .+++.|+|+.+...  .+|..+.  .+|+.|.|+++.+...|. . -+++|+.|+|.++.+
T Consensus       241 ~~L~~L~Ls~N~L~--~LP~~l~--s~L~~L~Ls~N~L~~LP~-~-l~~sL~~L~Ls~N~L  295 (754)
T PRK15370        241 DTIQEMELSINRIT--ELPERLP--SALQSLDLFHNKISCLPE-N-LPEELRYLSVYDNSI  295 (754)
T ss_pred             ccccEEECcCCccC--cCChhHh--CCCCEEECcCCccCcccc-c-cCCCCcEEECCCCcc
Confidence            35677777665432  3443322  467777776654444431 1 124677777766655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=96.36  E-value=0.007  Score=59.96  Aligned_cols=71  Identities=20%  Similarity=0.178  Sum_probs=35.3

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      +-..|+++.+..  ..+|..+.  ++|+.|.+.++.+...|.   ..++|++|+|.+..++.  +..   ..+.|++|.+
T Consensus       202 ~~~~LdLs~~~L--tsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~L  269 (788)
T PRK15387        202 GNAVLNVGESGL--TTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELSI  269 (788)
T ss_pred             CCcEEEcCCCCC--CcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccceeec
Confidence            445555555432  24555433  356666666654444431   24666777766665431  111   1245555555


Q ss_pred             eee
Q 047644          205 TVY  207 (314)
Q Consensus       205 ~~c  207 (314)
                      .++
T Consensus       270 s~N  272 (788)
T PRK15387        270 FSN  272 (788)
T ss_pred             cCC
Confidence            554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=96.26  E-value=8.5e-05  Score=58.76  Aligned_cols=68  Identities=25%  Similarity=0.303  Sum_probs=43.5

Q ss_pred             ccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          140 PLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       140 ~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      ..|+.+-...+|+.|++.+....+.|....++|.|+.|++.--.+..  +..=+.++|.||.|+|.+...
T Consensus        47 ~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynnl  114 (264)
T KOG0617|consen   47 VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNNL  114 (264)
T ss_pred             ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhcccccc
Confidence            45666667778888888777666666566677777777765333211  122245668888888777643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.26  E-value=0.00034  Score=60.13  Aligned_cols=182  Identities=14%  Similarity=0.072  Sum_probs=109.0

Q ss_pred             CCceEEEEEecC-CCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRD-HERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~-~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      ..|++++|.-+. .++.++...+-..+.|+.|+|+........ ..+....+|++|-|.+..++...+...+..-|.+.+
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            478888886543 234444444556689999999776443322 123567789999999999988888999999999999


Q ss_pred             eeeeeeec---cCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc----eeecCCCCce
Q 047644          202 LSLTVYFT---AANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS----YAVHQLPSLH  274 (314)
Q Consensus       202 L~L~~c~~---~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~  274 (314)
                      |+++....   ..|. ....-.++.++.|+.-  .|....-.+...+.-..||+..+.+..++..+    -.+..+|++.
T Consensus       151 lHmS~N~~rq~n~Dd-~c~e~~s~~v~tlh~~--~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~  227 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDD-NCIEDWSTEVLTLHQL--PCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS  227 (418)
T ss_pred             hhhccchhhhhcccc-ccccccchhhhhhhcC--CcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence            99887632   1111 2222255667777665  45432222234455567777777776654431    1123345444


Q ss_pred             eEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          275 KAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       275 ~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      -+.++-...     +.-+...-+.+++.+..|.+..|+|
T Consensus       228 ~LnL~~~~i-----dswasvD~Ln~f~~l~dlRv~~~Pl  261 (418)
T KOG2982|consen  228 CLNLGANNI-----DSWASVDALNGFPQLVDLRVSENPL  261 (418)
T ss_pred             hhhhccccc-----ccHHHHHHHcCCchhheeeccCCcc
Confidence            333332211     1112334567777777777777765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.09  E-value=0.00056  Score=66.98  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=93.7

Q ss_pred             HHhCCceEEEEEecCCCccccCCcccc-cCCeeEEEEcceeeccc--CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCc
Q 047644          121 AISRNVREIEIDLRDHERIPLPASIYR-SITLEVLRLRSYFALTL--PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCP  197 (314)
Q Consensus       121 ~~~~~l~~L~l~~~~~~~~~l~~~~~~-c~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp  197 (314)
                      ....++++|++.....-....+..++. +|+|++|.+.+-.+...  -....+||+|..|+++++.+++-   .-+++-+
T Consensus       119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~Lk  195 (699)
T KOG3665|consen  119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLK  195 (699)
T ss_pred             HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccc
Confidence            344689999997654333333434444 69999999988644322  23567899999999999998552   4456779


Q ss_pred             cccceeeeeeeccCCCCCcEE-EecCCcceEEEEeeeeCCCCCCC-----cceEEEEcCCccEEEeeccccc----ceee
Q 047644          198 CLQHLSLTVYFTAANPASNLI-ISSATLKTFVLEVMYCSHSSAPN-----QHTVTIVAPNLEFLDITDDLAV----SYAV  267 (314)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~~~-i~~~~Lk~L~i~~~~c~~~~~~~-----~~~l~~~~p~L~~L~l~~~~~~----~~~~  267 (314)
                      +||.|.+.+-.. ........ .....|+.|+|+   ........     .-......|+|+.|+.+|....    ...+
T Consensus       196 nLq~L~mrnLe~-e~~~~l~~LF~L~~L~vLDIS---~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll  271 (699)
T KOG3665|consen  196 NLQVLSMRNLEF-ESYQDLIDLFNLKKLRVLDIS---RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELL  271 (699)
T ss_pred             cHHHHhccCCCC-CchhhHHHHhcccCCCeeecc---ccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHH
Confidence            999999988755 21101111 256889999998   43322111     1122235789999999986544    2223


Q ss_pred             cCCCCceeEE
Q 047644          268 HQLPSLHKAV  277 (314)
Q Consensus       268 ~~~p~L~~l~  277 (314)
                      ..-|+|+.+.
T Consensus       272 ~sH~~L~~i~  281 (699)
T KOG3665|consen  272 NSHPNLQQIA  281 (699)
T ss_pred             HhCccHhhhh
Confidence            4455555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.06  E-value=0.0024  Score=41.79  Aligned_cols=58  Identities=24%  Similarity=0.311  Sum_probs=40.2

Q ss_pred             CCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          250 PNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       250 p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      |+|++|.+++....   ...+.+++.|+.+++..+...      ..-...+.++++++.|.+++|.|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~------~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT------SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES------EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC------ccCHHHHcCCCCCCEEeCcCCcC
Confidence            67788888876443   234677888888888754221      11223588999999999998865

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.98  E-value=0.016  Score=57.42  Aligned_cols=51  Identities=20%  Similarity=0.249  Sum_probs=26.4

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEE
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQ  183 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~  183 (314)
                      +++.|.+..+..+  .+|.   ..++|++|.|+++.+...|.   ..++|+.|+|.+..
T Consensus       223 ~L~~L~L~~N~Lt--~LP~---lp~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~  273 (788)
T PRK15387        223 HITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP  273 (788)
T ss_pred             CCCEEEccCCcCC--CCCC---CCCCCcEEEecCCccCcccC---cccccceeeccCCc
Confidence            5666666654322  2332   23667777777664444431   23455555554443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.91  E-value=0.011  Score=58.58  Aligned_cols=13  Identities=15%  Similarity=0.279  Sum_probs=10.5

Q ss_pred             CCceEEEeecCCC
Q 047644          301 TKTKCLTLSAGVL  313 (314)
Q Consensus       301 ~~l~~L~l~~~~l  313 (314)
                      ++++.|.++.|.|
T Consensus       346 ~sL~~L~Ls~N~L  358 (754)
T PRK15370        346 PELQVLDVSKNQI  358 (754)
T ss_pred             CcccEEECCCCCC
Confidence            5888888888865

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.90  E-value=0.00072  Score=56.98  Aligned_cols=134  Identities=23%  Similarity=0.187  Sum_probs=81.2

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~  203 (314)
                      .+.++.++.+....-.+....-....|+.|++.++...... ..-.+|+||.|.++...+ ....+.-++..||+|.+|+
T Consensus        19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN   97 (260)
T ss_pred             hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence            34555555443333333333333456677776666444433 555788999999988855 4556777888889999999


Q ss_pred             eeeeeccCCCCCcEEE--ecCCcceEEEEeeeeCCCC-CCCcceEEEEcCCccEEEeeccccc
Q 047644          204 LTVYFTAANPASNLII--SSATLKTFVLEVMYCSHSS-APNQHTVTIVAPNLEFLDITDDLAV  263 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i--~~~~Lk~L~i~~~~c~~~~-~~~~~~l~~~~p~L~~L~l~~~~~~  263 (314)
                      ++.... .++ ..+.-  .-++|++|++.  +|.... ....+.+..-.|+|++|+..+....
T Consensus        98 ls~Nki-~~l-stl~pl~~l~nL~~Ldl~--n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~  156 (260)
T KOG2739|consen   98 LSGNKI-KDL-STLRPLKELENLKSLDLF--NCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE  156 (260)
T ss_pred             ecCCcc-ccc-cccchhhhhcchhhhhcc--cCCccccccHHHHHHHHhhhhccccccccCCc
Confidence            998765 333 22211  23467777776  565422 2223445567889999887765543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.69  E-value=0.00079  Score=57.93  Aligned_cols=137  Identities=12%  Similarity=0.104  Sum_probs=80.7

Q ss_pred             CCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEE
Q 047644          170 CFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIV  248 (314)
Q Consensus       170 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~  248 (314)
                      .+..++.|.|.+-.+ +...+..|+.+.|+|+.|+|+......++ +.+.....+|+.|.+.   .....-....+..-.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I-~~lp~p~~nl~~lVLN---gT~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI-KSLPLPLKNLRVLVLN---GTGLSWTQSTSSLDD  144 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc-ccCcccccceEEEEEc---CCCCChhhhhhhhhc
Confidence            467788888888888 66778888888899999998876553344 4444455677777774   222222223344445


Q ss_pred             cCCccEEEeeccccc-----ceeecC-CCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          249 APNLEFLDITDDLAV-----SYAVHQ-LPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       249 ~p~L~~L~l~~~~~~-----~~~~~~-~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      .|.++.|.++.....     .....+ -|.++.+.+.-|....    +.+..++.+-++|+..+.+..++|+
T Consensus       145 lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~----w~~~~~l~r~Fpnv~sv~v~e~PlK  212 (418)
T KOG2982|consen  145 LPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQL----WLNKNKLSRIFPNVNSVFVCEGPLK  212 (418)
T ss_pred             chhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHH----HHHHHhHHhhcccchheeeecCccc
Confidence            666666666554221     011111 1233333332221110    3356677888888888888888764

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=95.61  E-value=0.0031  Score=55.02  Aligned_cols=37  Identities=32%  Similarity=0.479  Sum_probs=35.0

Q ss_pred             CcccCCCC----hHHHHHHhcCCChhhhhhhhccccccccc
Q 047644           18 EDRISCLP----DSILCQILSVPPTKDAVATSILSPRWKHA   54 (314)
Q Consensus        18 ~d~~~~LP----d~ll~~Ils~L~~~d~~~~~~vskrWr~l   54 (314)
                      .|.++.||    |++...||++|+..++..+-.|||+|+++
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~  112 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRV  112 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            48899999    99999999999999999999999999965

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=95.27  E-value=0.00043  Score=65.26  Aligned_cols=83  Identities=13%  Similarity=0.038  Sum_probs=59.3

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      .++.|.++...++-..+|..+-...+|..++|+.......|+....+++|++|+|++-.++.-..  -+.---+||.|+|
T Consensus       198 sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~--~~~~W~~lEtLNl  275 (1255)
T KOG0444|consen  198 SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM--TEGEWENLETLNL  275 (1255)
T ss_pred             hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec--cHHHHhhhhhhcc
Confidence            45555566666677788888888888888888887777777677788999999999888744211  1112257788888


Q ss_pred             eeeec
Q 047644          205 TVYFT  209 (314)
Q Consensus       205 ~~c~~  209 (314)
                      +..+.
T Consensus       276 SrNQL  280 (1255)
T KOG0444|consen  276 SRNQL  280 (1255)
T ss_pred             ccchh
Confidence            87754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=94.94  E-value=0.00016  Score=68.07  Aligned_cols=17  Identities=29%  Similarity=0.264  Sum_probs=11.0

Q ss_pred             hhcCCCceEEEeecCCC
Q 047644          297 LAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       297 l~~~~~l~~L~l~~~~l  313 (314)
                      +..|..+++|.|+.|.|
T Consensus       335 lcRC~kL~kL~L~~NrL  351 (1255)
T KOG0444|consen  335 LCRCVKLQKLKLDHNRL  351 (1255)
T ss_pred             hhhhHHHHHhcccccce
Confidence            44677777777766643

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=94.93  E-value=0.0017  Score=63.71  Aligned_cols=128  Identities=15%  Similarity=0.048  Sum_probs=59.6

Q ss_pred             CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEc
Q 047644          171 FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVA  249 (314)
Q Consensus       171 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~  249 (314)
                      ++.|+.|.|.+-.++|+.+.- +.+.++|+.|+|.+... ... ....+ .-+.|+.|.++   .+..+.  .......+
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~-l~~~~hLKVLhLsyNrL-~~f-pas~~~kle~LeeL~LS---GNkL~~--Lp~tva~~  429 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPV-LVNFKHLKVLHLSYNRL-NSF-PASKLRKLEELEELNLS---GNKLTT--LPDTVANL  429 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhh-hccccceeeeeeccccc-ccC-CHHHHhchHHhHHHhcc---cchhhh--hhHHHHhh
Confidence            344555555555555544433 34666666666666532 111 11111 22344555554   222111  11222345


Q ss_pred             CCccEEEeeccccc-ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCC
Q 047644          250 PNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGV  312 (314)
Q Consensus       250 p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~  312 (314)
                      +.|++|...+.... ...+...|.|+-+|++..-..     ...+...+.. ++++.|.+++|+
T Consensus       430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~-----~~~l~~~~p~-p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLS-----EVTLPEALPS-PNLKYLDLSGNT  487 (1081)
T ss_pred             hhhHHHhhcCCceeechhhhhcCcceEEecccchhh-----hhhhhhhCCC-cccceeeccCCc
Confidence            55555555554332 234566777777777654221     1111111222 677888887776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.91  E-value=0.0038  Score=60.00  Aligned_cols=201  Identities=16%  Similarity=0.119  Sum_probs=110.5

Q ss_pred             CCCeeEEEEEeccCCCcch---HHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcC-
Q 047644           95 PSSVEKFSLRCSYLRSLGM---FDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVC-  170 (314)
Q Consensus        95 ~~~l~~l~l~~~~~~~~~~---~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~-  170 (314)
                      +.+++.|+.......+...   ++..++..  ...+.+.+--.+.....-|..|+...+|++|.|.+|....+- +... 
T Consensus        54 g~~~~~f~a~~s~~ads~vl~qLq~i~d~l--qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~-GL~~l  130 (1096)
T KOG1859|consen   54 GAPVDYFRAYVSDNADSRVLEQLQRILDFL--QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAK-GLQEL  130 (1096)
T ss_pred             CCCCceeEEecCCcccchHHHHHHHHHHHH--hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhh-hhHHH
Confidence            4568888877665444322   22233332  234444443333333333778889999999999998432211 0000 


Q ss_pred             --------------------------------CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEE
Q 047644          171 --------------------------------FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI  218 (314)
Q Consensus       171 --------------------------------~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~  218 (314)
                                                      +-.|.+-++..-.+  ..+..-+.-.|+||.|+|+.... .++ . --
T Consensus       131 r~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L--~~mD~SLqll~ale~LnLshNk~-~~v-~-~L  205 (1096)
T KOG1859|consen  131 RHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRL--VLMDESLQLLPALESLNLSHNKF-TKV-D-NL  205 (1096)
T ss_pred             HHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhH--HhHHHHHHHHHHhhhhccchhhh-hhh-H-HH
Confidence                                            11122222222211  01112222347888888887765 443 2 11


Q ss_pred             EecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEeccCCCCCCCChHHHh
Q 047644          219 ISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLL  297 (314)
Q Consensus       219 i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll  297 (314)
                      -.++.||+|+++   .+....  ...+....-.|+.|.+.+...... -+.++.+|+.+++..+...++     .=...|
T Consensus       206 r~l~~LkhLDls---yN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~h-----seL~pL  275 (1096)
T KOG1859|consen  206 RRLPKLKHLDLS---YNCLRH--VPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEH-----SELEPL  275 (1096)
T ss_pred             Hhcccccccccc---cchhcc--ccccchhhhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcc-----hhhhHH
Confidence            267888888887   222111  222333333388888887654422 256788888898887755432     244567


Q ss_pred             hcCCCceEEEeecCCC
Q 047644          298 AGMTKTKCLTLSAGVL  313 (314)
Q Consensus       298 ~~~~~l~~L~l~~~~l  313 (314)
                      ..+..++.|.|.+|+|
T Consensus       276 wsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  276 WSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             HHHHHHHHHhhcCCcc
Confidence            7888888888888875

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.64  E-value=0.05  Score=49.78  Aligned_cols=135  Identities=16%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      +++.+|+++.|.  ...+|.   --.+|+.|.+++|......+... .++|+.|.+.+|..    +..+   -+.|+.|.
T Consensus        52 ~~l~~L~Is~c~--L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~----L~sL---P~sLe~L~  118 (426)
T PRK15386         52 RASGRLYIKDCD--IESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPE----ISGL---PESVRSLE  118 (426)
T ss_pred             cCCCEEEeCCCC--CcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccc----cccc---ccccceEE
Confidence            578888888773  233341   12468888888874432211111 25788888887732    1111   24577777


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCC-CCceeEEEeEE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQL-PSLHKAVYYVM  281 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~-p~L~~l~l~~~  281 (314)
                      +.....     ..+..--++|+.|.+.  .+......  ..-..-.++|++|.+.++.... ....+ ++|+.++++..
T Consensus       119 L~~n~~-----~~L~~LPssLk~L~I~--~~n~~~~~--~lp~~LPsSLk~L~Is~c~~i~-LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSAT-----DSIKNVPNGLTSLSIN--SYNPENQA--RIDNLISPSLKTLSLTGCSNII-LPEKLPESLQSITLHIE  187 (426)
T ss_pred             eCCCCC-----cccccCcchHhheecc--cccccccc--ccccccCCcccEEEecCCCccc-CcccccccCcEEEeccc
Confidence            753221     1222223467887773  11111000  0001234789999999876432 11223 47888887653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.39  E-value=0.016  Score=35.22  Aligned_cols=33  Identities=27%  Similarity=0.272  Sum_probs=12.9

Q ss_pred             CcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644          173 RLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       173 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c  207 (314)
                      +|++|+|.+..+++  +...+..||.|+.|+++++
T Consensus         2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            34444444444332  3333344444444444444

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=94.37  E-value=0.005  Score=53.21  Aligned_cols=128  Identities=16%  Similarity=0.100  Sum_probs=73.7

Q ss_pred             CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcC
Q 047644          171 FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAP  250 (314)
Q Consensus       171 ~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p  250 (314)
                      +..|++|.|++-.++.  +..-+.-.|.++.|++++... ..+ .. --..++|..|+++   .+..  .....+....-
T Consensus       283 Wq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i-~~v-~n-La~L~~L~~LDLS---~N~L--s~~~Gwh~KLG  352 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRI-RTV-QN-LAELPQLQLLDLS---GNLL--AECVGWHLKLG  352 (490)
T ss_pred             Hhhhhhccccccchhh--hhhhhhhccceeEEeccccce-eee-hh-hhhcccceEeecc---cchh--HhhhhhHhhhc
Confidence            5677788887776622  222233448888888887643 111 11 1134678888876   2211  11234455667


Q ss_pred             CccEEEeecccccc-eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          251 NLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       251 ~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      |+++|.+.+..... .-++.+-+|..+++.-....     ...-.+-+.++|.+++|.+.+|+|
T Consensus       353 NIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie-----~ldeV~~IG~LPCLE~l~L~~NPl  411 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIE-----ELDEVNHIGNLPCLETLRLTGNPL  411 (490)
T ss_pred             CEeeeehhhhhHhhhhhhHhhhhheeccccccchh-----hHHHhcccccccHHHHHhhcCCCc
Confidence            77888877765432 22455666666666543221     222445677888888888888876

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=94.36  E-value=0.019  Score=34.84  Aligned_cols=37  Identities=30%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcC
Q 047644          149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPT  185 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~  185 (314)
                      ++|++|.++++...+.|+....+++|+.|+|.+..++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            4799999999988787734789999999999998874

...

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=93.66  E-value=0.036  Score=50.00  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=33.4

Q ss_pred             cCCCChHHHHHHhcCCC-hhhhhhhhcccccccccccc
Q 047644           21 ISCLPDSILCQILSVPP-TKDAVATSILSPRWKHAWTS   57 (314)
Q Consensus        21 ~~~LPd~ll~~Ils~L~-~~d~~~~~~vskrWr~l~~~   57 (314)
                      +++||+|+|..|..+|+ .-|.+|.+.||+.||.....
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            67899999999999997 78999999999999986543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=93.65  E-value=0.0061  Score=48.48  Aligned_cols=83  Identities=20%  Similarity=0.174  Sum_probs=61.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .+++.|.+....  ...+|..+++.++|+.|++.-......|.++++||.|+.|.|.+-.+++..+..-+-....|.-|.
T Consensus        56 ~nlevln~~nnq--ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   56 KNLEVLNLSNNQ--IEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhcccch--hhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            477777777664  457899999999999999976666677779999999999999998886655543333344555555


Q ss_pred             eeeee
Q 047644          204 LTVYF  208 (314)
Q Consensus       204 L~~c~  208 (314)
                      |++..
T Consensus       134 l~dnd  138 (264)
T KOG0617|consen  134 LGDND  138 (264)
T ss_pred             hcCCC
Confidence            55543

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=93.10  E-value=0.078  Score=46.08  Aligned_cols=154  Identities=16%  Similarity=0.130  Sum_probs=81.2

Q ss_pred             cccCCeeEEEEcceee-c---cc-CC----CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCC---
Q 047644          146 YRSITLEVLRLRSYFA-L---TL-PP----DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANP---  213 (314)
Q Consensus       146 ~~c~~L~~L~L~~~~~-~---~~-~~----~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~---  213 (314)
                      --|..|+.|.+++.-- +   .. |.    ....|.+|+++.++.|.  ...+..+...=|.|..+.+.+... .+.   
T Consensus       179 df~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~--~~~i~~~~~~kptl~t~~v~~s~~-~~~~~l  255 (490)
T KOG1259|consen  179 DFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS--TENIVDIELLKPTLQTICVHNTTI-QDVPSL  255 (490)
T ss_pred             HhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc--hhheeceeecCchhheeeeecccc-cccccc
Confidence            3467888888877411 0   00 10    11247889998888876  445666777789999988887654 111   


Q ss_pred             -----------------CCcEEEec---CCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCC
Q 047644          214 -----------------ASNLIISS---ATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPS  272 (314)
Q Consensus       214 -----------------~~~~~i~~---~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~  272 (314)
                                       .+......   ..|..|+++   .+.  +.....-.--+|.++.|+++-.....+ .+..+++
T Consensus       256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS---~N~--I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~  330 (490)
T KOG1259|consen  256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLS---GNL--ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQ  330 (490)
T ss_pred             cchhhhcCccCCCCCccCCceEEecchHhhhhhcccc---ccc--hhhhhhhhhhccceeEEeccccceeeehhhhhccc
Confidence                             00111111   245555554   111  111112222456666666665433211 1445667


Q ss_pred             ceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          273 LHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       273 L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      |.+++++.....       .+..+-..+-|+|+|.+..|-||
T Consensus       331 L~~LDLS~N~Ls-------~~~Gwh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  331 LQLLDLSGNLLA-------ECVGWHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             ceEeecccchhH-------hhhhhHhhhcCEeeeehhhhhHh
Confidence            777777655322       12233345566777777666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.91  E-value=0.02  Score=48.49  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=48.1

Q ss_pred             ceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCC-CCCCCcceEEEEcCCcc
Q 047644          175 KTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSH-SSAPNQHTVTIVAPNLE  253 (314)
Q Consensus       175 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~-~~~~~~~~l~~~~p~L~  253 (314)
                      +++.|..+.-....+..+....-.|+.|.+.+|.. +..  .-.-..++||.|.++   |+. ....++..+...+|+|+
T Consensus        21 ~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gl-tt~--~~~P~Lp~LkkL~ls---dn~~~~~~~l~vl~e~~P~l~   94 (260)
T KOG2739|consen   21 DELFLDNARSGAGKLGGLTDEFVELELLSVINVGL-TTL--TNFPKLPKLKKLELS---DNYRRVSGGLEVLAEKAPNLK   94 (260)
T ss_pred             hhhhcchhhhcCCCcccccccccchhhhhhhccce-eec--ccCCCcchhhhhccc---CCcccccccceehhhhCCcee
Confidence            34444444333333444444555555555555533 111  001133566666665   442 22233445555667777


Q ss_pred             EEEeecccccce----eecCCCCceeEEEeEE
Q 047644          254 FLDITDDLAVSY----AVHQLPSLHKAVYYVM  281 (314)
Q Consensus       254 ~L~l~~~~~~~~----~~~~~p~L~~l~l~~~  281 (314)
                      +|+++|.....+    .+..+++|..+++..+
T Consensus        95 ~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~  126 (260)
T KOG2739|consen   95 VLNLSGNKIKDLSTLRPLKELENLKSLDLFNC  126 (260)
T ss_pred             EEeecCCccccccccchhhhhcchhhhhcccC
Confidence            777777654411    1233444555555554

>PLN03150 hypothetical protein; Provisional

Probab=92.74  E-value=0.09  Score=51.46  Aligned_cols=106  Identities=13%  Similarity=0.043  Sum_probs=58.6

Q ss_pred             CeeEEEEcceeecc-cCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEE
Q 047644          150 TLEVLRLRSYFALT-LPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFV  228 (314)
Q Consensus       150 ~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~  228 (314)
                      .++.|.|+++.... .|.....+++|+.|+|.+..+.. .+...+..++.|+.|+|+++.. .+.-...--..++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N~l-sg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYNSF-NGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCCCC-CCCCchHHhcCCCCCEEE
Confidence            36777777764432 23344567888888888877632 2444567788888888888755 221011111456788888


Q ss_pred             EEeeeeCCCCCCCcceEEEEcCCccEEEeecc
Q 047644          229 LEVMYCSHSSAPNQHTVTIVAPNLEFLDITDD  260 (314)
Q Consensus       229 i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~  260 (314)
                      ++   .+.....-+..+.-...++..+.+.+.
T Consensus       497 Ls---~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        497 LN---GNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             Cc---CCcccccCChHHhhccccCceEEecCC
Confidence            76   322222222222222234556666654

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=92.31  E-value=0.038  Score=47.95  Aligned_cols=38  Identities=21%  Similarity=0.255  Sum_probs=32.1

Q ss_pred             CCcccCCCChHHHHHHhcC-----CChhhhhhhhccccccccc
Q 047644           17 SEDRISCLPDSILCQILSV-----PPTKDAVATSILSPRWKHA   54 (314)
Q Consensus        17 ~~d~~~~LPd~ll~~Ils~-----L~~~d~~~~~~vskrWr~l   54 (314)
                      ..+.|..||||+|..||..     |+.+++.+++.|||.|...
T Consensus       103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~  145 (366)
T KOG2997|consen  103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKC  145 (366)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHH
Confidence            4466889999999999864     5579999999999999853

>PLN03150 hypothetical protein; Provisional

Probab=91.55  E-value=0.17  Score=49.62  Aligned_cols=69  Identities=16%  Similarity=0.164  Sum_probs=41.2

Q ss_pred             ccCCcccccCCeeEEEEcceeec-ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          140 PLPASIYRSITLEVLRLRSYFAL-TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       140 ~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      .+|..+..+++|+.|.|+++.+. ..|.....+++|+.|+|.+..++.. +..-+..+++|+.|+|+++..
T Consensus       433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls~N~l  502 (623)
T PLN03150        433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLNGNSL  502 (623)
T ss_pred             cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECcCCcc
Confidence            34445555667777777766443 3333455667777777777666322 344456677777777776643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=91.25  E-value=0.071  Score=48.97  Aligned_cols=78  Identities=19%  Similarity=0.202  Sum_probs=43.9

Q ss_pred             CCeeEEEEcceeecccCCCCcCCC-CcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          149 ITLEVLRLRSYFALTLPPDGVCFP-RLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      +.+..|.+.+....+.+.....+. +|+.|++.+-.+..  +..-+..+|.|+.|.+.++.. .++ .......+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l-~~l-~~~~~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDL-SDL-PKLLSNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchh-hhh-hhhhhhhhhhhhe
Confidence            556777776665555552333342 67777776666422  113356777777777777765 333 2222255666666


Q ss_pred             EEE
Q 047644          228 VLE  230 (314)
Q Consensus       228 ~i~  230 (314)
                      .++
T Consensus       192 ~ls  194 (394)
T COG4886         192 DLS  194 (394)
T ss_pred             ecc
Confidence            664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.79  E-value=0.11  Score=47.64  Aligned_cols=81  Identities=22%  Similarity=0.259  Sum_probs=51.0

Q ss_pred             CceEEEEEecCCCccccCCcccccC-CeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSI-TLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~-~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .+..+++....  ...++......+ +|+.|.+++....+.|.....+++|+.|.+....+.+  +.......+.|+.|.
T Consensus       117 ~l~~L~l~~n~--i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~  192 (394)
T COG4886         117 NLTSLDLDNNN--ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD  192 (394)
T ss_pred             ceeEEecCCcc--cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence            45555555443  334455444453 7888888777665554355678888888888887644  333333667888888


Q ss_pred             eeeeec
Q 047644          204 LTVYFT  209 (314)
Q Consensus       204 L~~c~~  209 (314)
                      +++...
T Consensus       193 ls~N~i  198 (394)
T COG4886         193 LSGNKI  198 (394)
T ss_pred             ccCCcc
Confidence            887754

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.64  E-value=0.022  Score=46.46  Aligned_cols=63  Identities=16%  Similarity=0.078  Sum_probs=41.2

Q ss_pred             CCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeeccCCCCCcEE-EecCCcceEEEE
Q 047644          167 DGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI-ISSATLKTFVLE  230 (314)
Q Consensus       167 ~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~-i~~~~Lk~L~i~  230 (314)
                      ....++.++.|.|.+|.. +|..+..+-.-.|+||.|+|++|...++- +.-. ...++|+.|.+.
T Consensus       120 ~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  120 HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLY  184 (221)
T ss_pred             HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhc
Confidence            334567778888888866 88888888888888888888888653321 1111 134566666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.39  E-value=0.9  Score=41.80  Aligned_cols=116  Identities=21%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             hCCceEEEEEecCCCccccCCcccccCCeeEEEEccee-ecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          123 SRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYF-ALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       123 ~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      ..++++|.+..|..- ..+|..+  .++|+.|.+++|. ....|      ++|+.|.|....     ...+-.--+.|++
T Consensus        71 P~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~~n~-----~~~L~~LPssLk~  136 (426)
T PRK15386         71 PNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIKGSA-----TDSIKNVPNGLTS  136 (426)
T ss_pred             CCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCcccccccc------cccceEEeCCCC-----CcccccCcchHhh
Confidence            457999999876431 2333322  3689999999883 33343      568888865322     1122223357888


Q ss_pred             eeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecc
Q 047644          202 LSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDD  260 (314)
Q Consensus       202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~  260 (314)
                      |.+.++...... ..-..-.++|+.|.+.  +|.....  +.   .-.++|++|.++..
T Consensus       137 L~I~~~n~~~~~-~lp~~LPsSLk~L~Is--~c~~i~L--P~---~LP~SLk~L~ls~n  187 (426)
T PRK15386        137 LSINSYNPENQA-RIDNLISPSLKTLSLT--GCSNIIL--PE---KLPESLQSITLHIE  187 (426)
T ss_pred             eecccccccccc-ccccccCCcccEEEec--CCCcccC--cc---cccccCcEEEeccc
Confidence            888654320000 0011123689999997  5653211  11   12367888888654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.38  E-value=0.0034  Score=53.67  Aligned_cols=33  Identities=21%  Similarity=0.243  Sum_probs=15.3

Q ss_pred             CCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644          172 PRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       172 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c  207 (314)
                      .+.+.|++++|.++|   ..|....|.||.|.|+..
T Consensus        19 ~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvN   51 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVN   51 (388)
T ss_pred             HHhhhhcccCCCccH---HHHHHhcccceeEEeecc
Confidence            344455555555444   222334455555555544

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=89.95  E-value=0.12  Score=49.49  Aligned_cols=39  Identities=28%  Similarity=0.472  Sum_probs=36.3

Q ss_pred             CCCcccCCCChHHHHHHhcCCChhhhhhhhccccccccc
Q 047644           16 GSEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHA   54 (314)
Q Consensus        16 ~~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l   54 (314)
                      ...|.++.||-|+..+||++|+.++++.+++||+.|+.+
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~  141 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKL  141 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhh
Confidence            356999999999999999999999999999999999865

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=89.50  E-value=0.12  Score=27.19  Aligned_cols=21  Identities=24%  Similarity=0.241  Sum_probs=9.8

Q ss_pred             CCcceEEeeeEEc-CCCcHHHH
Q 047644          172 PRLKTFHLMLQQP-TNHLPHNL  192 (314)
Q Consensus       172 ~~L~~L~L~~~~~-~~~~l~~l  192 (314)
                      |+|++|+|.+|.- +|.++..+
T Consensus         2 ~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        2 PNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCEeCCCCCCCcCHHHHHHH
Confidence            4455555555532 44444443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=87.83  E-value=0.63  Score=38.24  Aligned_cols=61  Identities=21%  Similarity=0.141  Sum_probs=38.2

Q ss_pred             cCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeec
Q 047644          148 SITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       148 c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      .+.|..|-|.+......- .....+|+|+.|.|.+-.+ .-+++.. +..||.|++|.+.+...
T Consensus        63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv  125 (233)
T KOG1644|consen   63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPV  125 (233)
T ss_pred             ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCch
Confidence            456777777766444332 1344677788888877766 4444554 35778888887776543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=86.77  E-value=1.9  Score=35.55  Aligned_cols=104  Identities=21%  Similarity=0.147  Sum_probs=63.8

Q ss_pred             CeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcC--CCcHHHHhcCCccccceeeeeeec--cCCCCCcEEEecCCcc
Q 047644          150 TLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPT--NHLPHNLFSRCPCLQHLSLTVYFT--AANPASNLIISSATLK  225 (314)
Q Consensus       150 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~--~~~l~~ll~~cp~Le~L~L~~c~~--~~~~~~~~~i~~~~Lk  225 (314)
                      ....+.|+.......+ ....+++|++|-|.+-.++  +..+..   -.|+|..|.|.+...  ..++  .--..+|+|+
T Consensus        43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~---~~p~l~~L~LtnNsi~~l~dl--~pLa~~p~L~  116 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDT---FLPNLKTLILTNNSIQELGDL--DPLASCPKLE  116 (233)
T ss_pred             ccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhh---hccccceEEecCcchhhhhhc--chhccCCccc
Confidence            3344555554333333 5557888999999888773  333444   448899999988643  1222  2234788999


Q ss_pred             eEEEEeeeeCCCCC-CCc-ceEEEEcCCccEEEeecccc
Q 047644          226 TFVLEVMYCSHSSA-PNQ-HTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       226 ~L~i~~~~c~~~~~-~~~-~~l~~~~p~L~~L~l~~~~~  262 (314)
                      .|.+.   -+..+. .+. ..+....|+|+.|++.+...
T Consensus       117 ~Ltll---~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  117 YLTLL---GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             eeeec---CCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            99885   333222 112 23444779999999887543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=86.55  E-value=0.096  Score=53.05  Aligned_cols=39  Identities=15%  Similarity=0.052  Sum_probs=18.1

Q ss_pred             cCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          169 VCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       169 ~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      ..+|.|+.|+|+++. +-..+..-++..-+|+.|+++++.
T Consensus       568 ~~m~~LrVLDLs~~~-~l~~LP~~I~~Li~LryL~L~~t~  606 (889)
T KOG4658|consen  568 RSLPLLRVLDLSGNS-SLSKLPSSIGELVHLRYLDLSDTG  606 (889)
T ss_pred             hhCcceEEEECCCCC-ccCcCChHHhhhhhhhcccccCCC
Confidence            345555555555422 122233334444555555555543

>PF13013 F-box-like_2: F-box-like domain

Probab=85.34  E-value=0.38  Score=35.40  Aligned_cols=30  Identities=20%  Similarity=0.037  Sum_probs=27.2

Q ss_pred             ccCCCChHHHHHHhcCCChhhhhhhhcccc
Q 047644           20 RISCLPDSILCQILSVPPTKDAVATSILSP   49 (314)
Q Consensus        20 ~~~~LPd~ll~~Ils~L~~~d~~~~~~vsk   49 (314)
                      .+.+||+||+..|+.+-...+...+...++
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            478899999999999999999988888887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 4e-06
 Identities = 50/307 (16%), Positives = 96/307 (31%), Gaps = 93/307 (30%)

Query: 55  WTSVR-------------NLC--FDDELSVMGDEVSGI---TVAAFEKFVHSVLARTHPS 96
           W +++              L    D   +   D  S I     +   +    + ++ + +
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 97  S------------VEKFSLRCSYL---RSLGMFDYWVSSAISRNVREIEIDLRDHERIPL 141
                           F+L C  L   R   + D+ +S+A + ++        DH  + L
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-LSAATTTHISL------DHHSMTL 298

Query: 142 PASIYRSITLEVLRLRSYFALTLPPDGV-CFPR-LKTFHLMLQQPTNH---LPHNLFSRC 196
                +S+ L+ L  R      LP + +   PR L      ++          H    + 
Sbjct: 299 TPDEVKSLLLKYLDCR---PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 197 P-----CLQHL----------SLTVYFTAANPASNLIISSATLKTF--------VLEVMY 233
                  L  L           L+V F    P  +  I +  L           V+ V+ 
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSV-F----P-PSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 234 CSHSSA-----PNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAV--YYVMFSEWP 286
             H  +     P + T++I         I  +L V   +    +LH+++  +Y +   + 
Sbjct: 410 KLHKYSLVEKQPKESTISI-------PSIYLELKVK--LENEYALHRSIVDHYNIPKTFD 460

Query: 287 PIDRRPP 293
             D  PP
Sbjct: 461 SDDLIPP 467

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 47/279 (16%), Positives = 81/279 (29%), Gaps = 71/279 (25%)

Query: 30  CQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDELSVMG-DEVSGITVAAFEKFVHS 88
           C+IL    T+    T  LS        +  ++  D     +  DEV  +      K++  
Sbjct: 266 CKILLT--TRFKQVTDFLSA------ATTTHISLDHHSMTLTPDEVKSL----LLKYLD- 312

Query: 89  VLARTHPSSVEKFS-LRCS----YLRS-LGMFDYWVSSAISRNVREIEIDLRDHERIPLP 142
              +  P  V   +  R S     +R  L  +D W      +    IE  L       L 
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV-----LE 367

Query: 143 ASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLM--------LQQPTNHLPHN--L 192
            + YR         + +  L++ P     P      L+        +    N L H   L
Sbjct: 368 PAEYR---------KMFDRLSVFPPSAHIP-TILLSLIWFDVIKSDVMVVVNKL-HKYSL 416

Query: 193 FSRCPCLQHLSL-TVYFTAANPASNLIISSATL-KTFV----LEVMYCSHSSAPNQHTVT 246
             + P    +S+ ++Y        N       L ++ V    +   + S    P      
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENE----YALHRSIVDHYNIPKTFDSDDLIPPY---- 468

Query: 247 IVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEW 285
                       D    S+  H L ++       +F   
Sbjct: 469 -----------LDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.75
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.75
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.92
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.81
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.74
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.74
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.74
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.73
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.69
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.68
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.67
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.62
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.59
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.58
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.57
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.56
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.55
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.55
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.53
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.5
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.5
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.5
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.49
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.49
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.48
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.47
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.47
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.47
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.46
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.46
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.46
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.45
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.42
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.42
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.42
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.4
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.4
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.39
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.39
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.36
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.36
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.35
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.35
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.34
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.33
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.31
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.31
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.3
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.3
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.3
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.29
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.25
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.25
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.23
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.22
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.2
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	98.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.12
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.1
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.1
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.09
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.05
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.03
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.01
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.97
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.95
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.91
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.86
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.86
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.85
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.83
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.71
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.66
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.65
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.61
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.58
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.58
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.57
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.55
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.54
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.47
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.3
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.3
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.2
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.13
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	96.92
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	96.91
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.75
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.72
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.49
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.02
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.02
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.96
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.78
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.68
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.65
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	95.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	95.03
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	93.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	92.75
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	86.22
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	80.33

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=3e-22  Score=178.34  Aligned_cols=167  Identities=17%  Similarity=0.137  Sum_probs=85.2

Q ss_pred             CcccCCCChHHHHHHhcCCChhhhhhhhcccccccccccc---ceeEEEecccccCCCccccccHHHHHHHHHHHHccCC
Q 047644           18 EDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTS---VRNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTH   94 (314)
Q Consensus        18 ~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~   94 (314)
                      ...+++||||++.+||+||+.+|+++++.|||+|+++...   ...+++......         ..    .+...+..  
T Consensus         6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~---------~~----~~~~~~~~--   70 (336)
T 2ast_B            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH---------PD----VTGRLLSQ--   70 (336)
T ss_dssp             -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC---------HH----HHHHHHHT--
T ss_pred             cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC---------HH----HHHhhhhc--
Confidence            4558999999999999999999999999999999988531   224444332221         11    22222111  


Q ss_pred             CCCeeEEEEEeccCCCc-chHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCC
Q 047644           95 PSSVEKFSLRCSYLRSL-GMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFP  172 (314)
Q Consensus        95 ~~~l~~l~l~~~~~~~~-~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~  172 (314)
                        .++.+.+....-... ..      .....++++|+++.+......++..+..|++|++|+|+++...+ .+.....++
T Consensus        71 --~l~~L~l~~n~l~~~~~~------~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~  142 (336)
T 2ast_B           71 --GVIAFRCPRSFMDQPLAE------HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS  142 (336)
T ss_dssp             --TCSEEECTTCEECSCCCS------CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT
T ss_pred             --cceEEEcCCccccccchh------hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC
Confidence              144443332110000 00      00013455555554432212233344445555555555553221 111223355


Q ss_pred             CcceEEeeeE-EcCCCcHHHHhcCCccccceeeeee
Q 047644          173 RLKTFHLMLQ-QPTNHLPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       173 ~L~~L~L~~~-~~~~~~l~~ll~~cp~Le~L~L~~c  207 (314)
                      +|++|+|.++ .+++..+..++..||.|++|++.+|
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            5555555555 3344445555555555555555555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.75  E-value=6.1e-21  Score=182.43  Aligned_cols=174  Identities=17%  Similarity=0.155  Sum_probs=95.3

Q ss_pred             CcccCCCChHHHHHHhcCCC-hhhhhhhhccccccccccccc-eeEEEecccccCCCccccccHHHHHHHHHHHHccCCC
Q 047644           18 EDRISCLPDSILCQILSVPP-TKDAVATSILSPRWKHAWTSV-RNLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHP   95 (314)
Q Consensus        18 ~d~~~~LPd~ll~~Ils~L~-~~d~~~~~~vskrWr~l~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~   95 (314)
                      .|+++.||||++.+||+||+ .+|+++++.|||||+++.... ..+.+.......        .       ...+.+.  
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~--------~-------~~~~~~~--   65 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVS--------P-------ATVIRRF--   65 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSC--------H-------HHHHHHC--
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccC--------H-------HHHHhhC--
Confidence            58999999999999999999 999999999999999883211 123332211100        0       0112221  


Q ss_pred             CCeeEEEEEeccC---------CCcchHHHHHHHHHh--CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-c
Q 047644           96 SSVEKFSLRCSYL---------RSLGMFDYWVSSAIS--RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-T  163 (314)
Q Consensus        96 ~~l~~l~l~~~~~---------~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~  163 (314)
                      +.++++.+..+..         .+...+..|+.....  .++++|++..+......+......|++|++|+|.+|... +
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            2377777776431         122345567765543  467888887664322221111124677777777766322 1


Q ss_pred             --cCCCCcCCCCcceEEeeeEEcCCCc---HHHHhcCCccccceeeeeee
Q 047644          164 --LPPDGVCFPRLKTFHLMLQQPTNHL---PHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       164 --~~~~~~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~c~  208 (314)
                        .+.....+++|++|+|.++.+++..   +..+...||+|++|++.+|.
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA  195 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC
Confidence              1112235677777777766653322   44445566677777776664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.75  E-value=1.7e-19  Score=172.41  Aligned_cols=261  Identities=12%  Similarity=0.110  Sum_probs=132.7

Q ss_pred             CCCChHHHHHHhcCC-Chhhhhhhhccccccccccccce-eEEEecccccCCCccccccHHHHHHHHHHHHccCCCCCee
Q 047644           22 SCLPDSILCQILSVP-PTKDAVATSILSPRWKHAWTSVR-NLCFDDELSVMGDEVSGITVAAFEKFVHSVLARTHPSSVE   99 (314)
Q Consensus        22 ~~LPd~ll~~Ils~L-~~~d~~~~~~vskrWr~l~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~l~   99 (314)
                      ++||||++.+||+|| +.+|+++++.|||||++++...+ .+.+... +.              .+...++.+...  ++
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~-~~--------------~~~~~~~~~~~~--L~   76 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALC-YT--------------ATPDRLSRRFPN--LR   76 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCG-GG--------------SCHHHHHHHCTT--CS
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeec-cc--------------cChHHHHHhCCC--Ce
Confidence            489999999999999 79999999999999998854333 1221111 10              011222222221  55


Q ss_pred             EEEEEeccC---------CCcchHHHHHHHHH----------------------------hCCceEEEEEecCC-Ccccc
Q 047644          100 KFSLRCSYL---------RSLGMFDYWVSSAI----------------------------SRNVREIEIDLRDH-ERIPL  141 (314)
Q Consensus       100 ~l~l~~~~~---------~~~~~~~~w~~~~~----------------------------~~~l~~L~l~~~~~-~~~~l  141 (314)
                      ++.++.+..         ........|+....                            ..++++|++..|.. ....+
T Consensus        77 ~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l  156 (592)
T 3ogk_B           77 SLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL  156 (592)
T ss_dssp             EEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH
T ss_pred             EEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHH
Confidence            555544221         11122233443332                            22344444444321 01112


Q ss_pred             CCcccccCCeeEEEEcceeecccC-----CCCcCCCCcceEEeeeEEcC---CCcHHHHhcCCccccceeeeeeeccCCC
Q 047644          142 PASIYRSITLEVLRLRSYFALTLP-----PDGVCFPRLKTFHLMLQQPT---NHLPHNLFSRCPCLQHLSLTVYFTAANP  213 (314)
Q Consensus       142 ~~~~~~c~~L~~L~L~~~~~~~~~-----~~~~~~~~L~~L~L~~~~~~---~~~l~~ll~~cp~Le~L~L~~c~~~~~~  213 (314)
                      +..+..|++|++|+|+++...+..     .....+++|++|+|.+..++   +..+..++.+||+|++|++.+|.. .++
T Consensus       157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l  235 (592)
T 3ogk_B          157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LEL  235 (592)
T ss_dssp             HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGG
T ss_pred             HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHH
Confidence            222224555566655555332210     01224556666666555442   345566666777777777777654 222


Q ss_pred             CCcEEEecCCcceEEEEeeeeCCC------------------------CCCCcceEEEEcCCccEEEeecccccc----e
Q 047644          214 ASNLIISSATLKTFVLEVMYCSHS------------------------SAPNQHTVTIVAPNLEFLDITDDLAVS----Y  265 (314)
Q Consensus       214 ~~~~~i~~~~Lk~L~i~~~~c~~~------------------------~~~~~~~l~~~~p~L~~L~l~~~~~~~----~  265 (314)
                       .......++|+.|.+.  .+...                        .......+.-.+|+|++|+++++....    .
T Consensus       236 -~~~~~~~~~L~~L~l~--~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~  312 (592)
T 3ogk_B          236 -VGFFKAAANLEEFCGG--SLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT  312 (592)
T ss_dssp             -HHHHHHCTTCCEEEEC--BCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred             -HHHHhhhhHHHhhccc--ccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence             1111123445555553  11100                        011111122246678888887765321    1


Q ss_pred             eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEee
Q 047644          266 AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLS  309 (314)
Q Consensus       266 ~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~  309 (314)
                      .+..+|+|+++++.....      ...+..+..++++++.|.|+
T Consensus       313 ~~~~~~~L~~L~L~~~~~------~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          313 LIQKCPNLEVLETRNVIG------DRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             HHTTCTTCCEEEEEGGGH------HHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHhCcCCCEEeccCccC------HHHHHHHHHhCCCCCEEEee
Confidence            246778888888762111      23456677788888888888

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.16  E-value=6.9e-11  Score=104.63  Aligned_cols=198  Identities=19%  Similarity=0.121  Sum_probs=129.2

Q ss_pred             CCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcc
Q 047644           96 SSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLK  175 (314)
Q Consensus        96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~  175 (314)
                      ..+..+.+....-..   +...+..  -.++++|+++.+...  .+|..+..+++|++|.|+++.+...|.....+++|+
T Consensus        81 ~~l~~L~L~~n~l~~---lp~~l~~--l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~  153 (328)
T 4fcg_A           81 PGRVALELRSVPLPQ---FPDQAFR--LSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR  153 (328)
T ss_dssp             TTCCEEEEESSCCSS---CCSCGGG--GTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred             cceeEEEccCCCchh---cChhhhh--CCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence            448888887554211   1111111  358899999887644  677778888999999999886666665667889999


Q ss_pred             eEEeeeEEcCCCcHHH--------HhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEE
Q 047644          176 TFHLMLQQPTNHLPHN--------LFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTI  247 (314)
Q Consensus       176 ~L~L~~~~~~~~~l~~--------ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~  247 (314)
                      .|+|.++......-..        .+.+++.|++|+|.+|.. ..+ ...--..++|+.|+++  ++... .. +.. .-
T Consensus       154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~l-p~~l~~l~~L~~L~L~--~N~l~-~l-~~~-l~  226 (328)
T 4fcg_A          154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSL-PASIANLQNLKSLKIR--NSPLS-AL-GPA-IH  226 (328)
T ss_dssp             EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCC-CGGGGGCTTCCEEEEE--SSCCC-CC-CGG-GG
T ss_pred             EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-Ccc-hHhhcCCCCCCEEEcc--CCCCC-cC-chh-hc
Confidence            9999988652211111        134589999999999865 333 1111245789999997  34322 11 111 23


Q ss_pred             EcCCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          248 VAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       248 ~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..|+|++|+++++...   ...+..+++|+.+++..+...      ..+...+.++++++.|.|++|.+
T Consensus       227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~------~~~p~~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL------LTLPLDIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC------CBCCTTGGGCTTCCEEECTTCTT
T ss_pred             cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch------hhcchhhhcCCCCCEEeCCCCCc
Confidence            5689999999986543   234677899999988764221      12233478899999999998764

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.04  E-value=1.6e-10  Score=102.24  Aligned_cols=174  Identities=16%  Similarity=0.114  Sum_probs=100.8

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-ccCCCCc---------CCCCcceEEeeeEEcCCCcHHHHh
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-TLPPDGV---------CFPRLKTFHLMLQQPTNHLPHNLF  193 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~---------~~~~L~~L~L~~~~~~~~~l~~ll  193 (314)
                      .++++|+++.+...  .+|..+..+++|++|.|++|... ..|....         .+++|+.|+|.+..++  .+..-+
T Consensus       127 ~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l  202 (328)
T 4fcg_A          127 AGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASI  202 (328)
T ss_dssp             TTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGG
T ss_pred             CCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhh
Confidence            46777777776543  56666777777777777776333 2232221         3777777777777764  233346


Q ss_pred             cCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCC
Q 047644          194 SRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQL  270 (314)
Q Consensus       194 ~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~  270 (314)
                      ..++.|++|+|.+|.. .++ ...--..++|+.|+++  +|.....  .....-..++|++|+++++...   ...+.++
T Consensus       203 ~~l~~L~~L~L~~N~l-~~l-~~~l~~l~~L~~L~Ls--~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l  276 (328)
T 4fcg_A          203 ANLQNLKSLKIRNSPL-SAL-GPAIHHLPKLEELDLR--GCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL  276 (328)
T ss_dssp             GGCTTCCEEEEESSCC-CCC-CGGGGGCTTCCEEECT--TCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGC
T ss_pred             cCCCCCCEEEccCCCC-CcC-chhhccCCCCCEEECc--CCcchhh--hHHHhcCCCCCCEEECCCCCchhhcchhhhcC
Confidence            6777777777777755 333 1111134677777775  3433211  1111224577777777775332   2235667


Q ss_pred             CCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          271 PSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       271 p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ++|+.+++..+..      ...+...+..+++++.+.+..+.+
T Consensus       277 ~~L~~L~L~~n~~------~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          277 TQLEKLDLRGCVN------LSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TTCCEEECTTCTT------CCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CCCCEEeCCCCCc------hhhccHHHhhccCceEEeCCHHHH
Confidence            7777777765422      223444567777777777665543

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.92  E-value=5e-10  Score=71.04  Aligned_cols=39  Identities=23%  Similarity=0.271  Sum_probs=33.5

Q ss_pred             CCcccCCCChHHHHHHhcCCChhhhhhhhcccccccccc
Q 047644           17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAW   55 (314)
Q Consensus        17 ~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~   55 (314)
                      ....++.||+|++.+||++|+.+|+++++.|||+|+.+.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~   43 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   43 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            346789999999999999999999999999999999764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.81  E-value=3.7e-11  Score=106.38  Aligned_cols=173  Identities=12%  Similarity=0.078  Sum_probs=102.2

Q ss_pred             eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc--cCCCCcCCCCcc
Q 047644           98 VEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT--LPPDGVCFPRLK  175 (314)
Q Consensus        98 l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~--~~~~~~~~~~L~  175 (314)
                      ++.+.+.... ..    ...+......+++.+++..+...  ..+..++.+++|++|+|+++...+  .+.....+++|+
T Consensus        49 ~~~l~l~~~~-~~----~~~~~~~~~~~l~~L~l~~n~l~--~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           49 WQTLDLTGKN-LH----PDVTGRLLSQGVIAFRCPRSFMD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             SSEEECTTCB-CC----HHHHHHHHHTTCSEEECTTCEEC--SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             heeecccccc-CC----HHHHHhhhhccceEEEcCCcccc--ccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            5666654322 11    23445555578999998665322  223346678999999999986543  333456899999


Q ss_pred             eEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCC--CCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcC-Cc
Q 047644          176 TFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAAN--PASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAP-NL  252 (314)
Q Consensus       176 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~--~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p-~L  252 (314)
                      +|+|.++.+++.... .+..||.|++|++.+|....+  + ....-..++|+.|+++  +|...+..+.....-..| +|
T Consensus       122 ~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l-~~~~~~~~~L~~L~l~--~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          122 NLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFAL-QTLLSSCSRLDELNLS--WCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             EEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHH-HHHHHHCTTCCEEECC--CCTTCCHHHHHHHHHHSCTTC
T ss_pred             EEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHH-HHHHhcCCCCCEEcCC--CCCCcChHHHHHHHHhcccCC
Confidence            999999987655444 456799999999999953121  1 1111245677777776  442222111122223455 66


Q ss_pred             cEEEeecccc--c----ceeecCCCCceeEEEeEE
Q 047644          253 EFLDITDDLA--V----SYAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       253 ~~L~l~~~~~--~----~~~~~~~p~L~~l~l~~~  281 (314)
                      ++|+++++..  .    ...+..+|+|+++++..+
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~  232 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  232 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCC
Confidence            6666666531  1    122344566666665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.74  E-value=4.5e-09  Score=90.19  Aligned_cols=176  Identities=18%  Similarity=0.150  Sum_probs=107.0

Q ss_pred             CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      .++++|++..+...  .++. .+..+++|++|.|+++.....+.. ...+++|++|+|.+..+..-. ...+..++.|++
T Consensus        37 ~~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKLS--SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCCS--CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred             CCCCEEECcCCCCC--eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence            36777777665432  2332 455678888888888766555533 356888888888887763321 244567888888


Q ss_pred             eeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEE
Q 047644          202 LSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVY  278 (314)
Q Consensus       202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l  278 (314)
                      |++.++.. ........-..++|+.|+++  ++.. ... .....-..++|++|++++.....+   .+.++++|+.+++
T Consensus       114 L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls--~n~l-~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  188 (270)
T 2o6q_A          114 LRLDRNQL-KSLPPRVFDSLTKLTYLSLG--YNEL-QSL-PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKL  188 (270)
T ss_dssp             EECCSSCC-CCCCTTTTTTCTTCCEEECC--SSCC-CCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             EECCCCcc-CeeCHHHhCcCcCCCEEECC--CCcC-Ccc-CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEEC
Confidence            88888754 32201111134678888886  3322 111 111112458888888887654422   3566788888888


Q ss_pred             eEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          279 YVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       279 ~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..+...      ......+..+++++.|.|++|++
T Consensus       189 ~~N~l~------~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          189 DNNQLK------RVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CSSCCS------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCcCC------cCCHHHhccccCCCEEEecCCCe
Confidence            654221      11223456788888998888876

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.74  E-value=7.9e-09  Score=91.72  Aligned_cols=17  Identities=24%  Similarity=0.415  Sum_probs=8.7

Q ss_pred             hhcCCCceEEEeecCCC
Q 047644          297 LAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       297 l~~~~~l~~L~l~~~~l  313 (314)
                      +..+++++.|.+++|.|
T Consensus       329 ~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          329 LASLSKMDSADFANQVI  345 (347)
T ss_dssp             GGGCTTCSEESSSCC--
T ss_pred             hhhhhccceeehhhhcc
Confidence            45555556665555554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.74  E-value=1.8e-09  Score=92.79  Aligned_cols=174  Identities=16%  Similarity=0.095  Sum_probs=98.2

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      ..+++|++..+....   ...+..+++|++|.++++...+.+ ....+++|+.|+|.++.++.- ....+..++.|++|+
T Consensus        41 ~~L~~L~l~~~~i~~---~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS---VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV  115 (272)
T ss_dssp             TTCCEEECTTSCCCC---CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             cceeeeeeCCCCccc---ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence            467777666553221   223556677777777776555443 455677777777777766321 233456777777777


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV  280 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~  280 (314)
                      +.+|.. .+......-..++|+.|+++  ++.. ... .....-..++|++|++++......   .+..+++|+.+++..
T Consensus       116 L~~n~l-~~~~~~~~~~l~~L~~L~L~--~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  190 (272)
T 3rfs_A          116 LVENQL-QSLPDGVFDKLTNLTYLNLA--HNQL-QSL-PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ  190 (272)
T ss_dssp             CTTSCC-CCCCTTTTTTCTTCCEEECC--SSCC-CCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCcC-CccCHHHhccCCCCCEEECC--CCcc-Ccc-CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence            777754 32201101134667777775  3321 111 111112457788888777654322   245677788777765


Q ss_pred             EeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      +...      ......+..+++++.|.+++|.+
T Consensus       191 N~l~------~~~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          191 NQLK------SVPDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             SCCS------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CcCC------ccCHHHHhCCcCCCEEEccCCCc
Confidence            4221      11224466778888888877765

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.73  E-value=1.1e-09  Score=104.15  Aligned_cols=36  Identities=17%  Similarity=0.334  Sum_probs=19.6

Q ss_pred             CCCCcceEEeeeEEcCCCcHHHHhcCCccccceeee
Q 047644          170 CFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLT  205 (314)
Q Consensus       170 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~  205 (314)
                      .+++|++|+|.++.+++..+..++..||+|++|++.
T Consensus       291 ~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             hcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            455555555555555444444555555555555555

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.69  E-value=1.4e-08  Score=90.54  Aligned_cols=176  Identities=14%  Similarity=0.096  Sum_probs=113.7

Q ss_pred             CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      .++++|+++.+...  .++. .+..+++|+.|.|+++...+.+ .....+++|++|+|.+..++.- ....+..++.|++
T Consensus        52 ~~L~~L~l~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRIT--YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCc--ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCE
Confidence            47888888766432  3333 5667889999999888665553 2456788999999988887542 2445678899999


Q ss_pred             eeeeeeeccCCCCCc--EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeE
Q 047644          202 LSLTVYFTAANPASN--LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKA  276 (314)
Q Consensus       202 L~L~~c~~~~~~~~~--~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l  276 (314)
                      |++.++.. ..+ ..  ..-..++|+.|+++  ++....... ....-..++|++|++++.....   ..+.+++.|+++
T Consensus       129 L~L~~n~l-~~l-~~~~~~~~l~~L~~L~l~--~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  203 (353)
T 2z80_A          129 LNLLGNPY-KTL-GETSLFSHLTKLQILRVG--NMDTFTKIQ-RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL  203 (353)
T ss_dssp             EECTTCCC-SSS-CSSCSCTTCTTCCEEEEE--ESSSCCEEC-TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             EECCCCCC-ccc-CchhhhccCCCCcEEECC--CCccccccC-HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence            99988865 333 22  11245789999987  442211100 0011245788889888875442   345677888888


Q ss_pred             EEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          277 VYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       277 ~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ++..+..      ......++..+++++.|.++.|.+
T Consensus       204 ~l~~n~l------~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          204 ILHMKQH------ILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             EEECSCS------TTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             cCCCCcc------ccchhhhhhhcccccEEECCCCcc
Confidence            8865422      222334566788888888888765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.69  E-value=7.4e-10  Score=105.48  Aligned_cols=108  Identities=17%  Similarity=0.140  Sum_probs=71.6

Q ss_pred             CeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCC-CccccCCcccccCCeeEEEEcceeeccc-----CCCCcC
Q 047644           97 SVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDH-ERIPLPASIYRSITLEVLRLRSYFALTL-----PPDGVC  170 (314)
Q Consensus        97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~-~~~~l~~~~~~c~~L~~L~L~~~~~~~~-----~~~~~~  170 (314)
                      .++++.+..+. ..+..+......  .+++++|++..|.. ....++.....|++|++|+|++|.+.+.     +.....
T Consensus       106 ~L~~L~L~~~~-~~~~~~~~l~~~--~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          106 WLEEIRLKRMV-VTDDCLELIAKS--FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             TCCEEEEESCB-CCHHHHHHHHHH--CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             CCCeEEeeCcE-EcHHHHHHHHHh--CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            48888888654 232222221111  35899999987732 2222444445789999999998864331     113346


Q ss_pred             CCCcceEEeeeEE--cCCCcHHHHhcCCccccceeeeee
Q 047644          171 FPRLKTFHLMLQQ--PTNHLPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       171 ~~~L~~L~L~~~~--~~~~~l~~ll~~cp~Le~L~L~~c  207 (314)
                      +++|++|+|.++.  +++..+..++..||+|++|++.+|
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            7899999998886  466678888888899999988887

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.68  E-value=5.1e-09  Score=90.46  Aligned_cols=177  Identities=19%  Similarity=0.092  Sum_probs=115.2

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEccee-eccc-CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYF-ALTL-PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~-~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      .++++|++..+.... ..+..+..+++|++|.|+++. .... +.....+++|++|+|.+..++.. ....+..++.|++
T Consensus        56 ~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  133 (285)
T 1ozn_A           56 RNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQY  133 (285)
T ss_dssp             TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCccce-eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcCCCE
Confidence            478888887664321 224456678899999998875 4444 23556788999999988877432 2344678899999


Q ss_pred             eeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEE
Q 047644          202 LSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVY  278 (314)
Q Consensus       202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l  278 (314)
                      |++.++.. ..+....--..++|+.|+++  ++.. ... .....-..++|++|++++.....   ..+.++++|+.+++
T Consensus       134 L~l~~n~l-~~~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  208 (285)
T 1ozn_A          134 LYLQDNAL-QALPDDTFRDLGNLTHLFLH--GNRI-SSV-PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL  208 (285)
T ss_dssp             EECCSSCC-CCCCTTTTTTCTTCCEEECC--SSCC-CEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             EECCCCcc-cccCHhHhccCCCccEEECC--CCcc-ccc-CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence            99998865 33301111135788888886  3321 110 00011146889999999876542   34667889999988


Q ss_pred             eEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          279 YVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       279 ~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..+..      .......+..+++++.|.+++|.+
T Consensus       209 ~~n~l------~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          209 FANNL------SALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CSSCC------SCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CCCcC------CcCCHHHcccCcccCEEeccCCCc
Confidence            76532      223446788999999999999875

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.68  E-value=1.5e-08  Score=88.79  Aligned_cols=166  Identities=17%  Similarity=0.102  Sum_probs=105.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+...  .++. +..+++|+.|.|+++...+.+ ....+++|+.|+|.++.+++-  .. +..++.|++|+
T Consensus        63 ~~L~~L~L~~n~i~--~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~  135 (308)
T 1h6u_A           63 NNLIGLELKDNQIT--DLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLY  135 (308)
T ss_dssp             TTCCEEECCSSCCC--CCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCC--CChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCc--hh-hcCCCCCCEEE
Confidence            47788887766432  2333 566778888888877655554 566778888888888777442  22 67788888888


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEe
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMF  282 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~  282 (314)
                      +.+|.. .+. .. --..++|+.|+++  +|.. ..  ... .-..++|+.|++++...... .+..++.|+++++..+.
T Consensus       136 l~~n~l-~~~-~~-l~~l~~L~~L~l~--~n~l-~~--~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~  206 (308)
T 1h6u_A          136 LDLNQI-TNI-SP-LAGLTNLQYLSIG--NAQV-SD--LTP-LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQ  206 (308)
T ss_dssp             CCSSCC-CCC-GG-GGGCTTCCEEECC--SSCC-CC--CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             CCCCcc-CcC-cc-ccCCCCccEEEcc--CCcC-CC--Chh-hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCc
Confidence            888765 443 22 1134678888886  3322 11  111 23567888888887654422 26677888888886543


Q ss_pred             ccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          283 SEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ...       +. -+..+++++.|.+++|.+
T Consensus       207 l~~-------~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          207 ISD-------VS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCB-------CG-GGTTCTTCCEEEEEEEEE
T ss_pred             cCc-------cc-cccCCCCCCEEEccCCee
Confidence            211       11 267888899998888764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.67  E-value=5.1e-09  Score=85.48  Aligned_cols=148  Identities=12%  Similarity=0.060  Sum_probs=76.0

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+...  .++ .+..+++|++|.++++...+.+ ....+++|++|+|.+..+++.... .+..+|.|+.|+
T Consensus        44 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT--DLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIP-NLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS--CCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSC-CCTTCTTCCEEE
T ss_pred             CCccEEeccCCCcc--ChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccCh-hhcCCCCCCEEE
Confidence            46667766655432  333 3555666677766666333332 444566666666666555321111 244566666666


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccc-cc-ceeecCCCCceeEEEeEE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDL-AV-SYAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~-~~-~~~~~~~p~L~~l~l~~~  281 (314)
                      +.+|.. .+.  .                         +.. .-..++|++|+++++. .. ...+..++.|+.+++..+
T Consensus       119 Ls~n~i-~~~--~-------------------------~~~-l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n  169 (197)
T 4ezg_A          119 ISHSAH-DDS--I-------------------------LTK-INTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD  169 (197)
T ss_dssp             CCSSBC-BGG--G-------------------------HHH-HTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred             ecCCcc-CcH--h-------------------------HHH-HhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence            666643 211  0                         000 0123455555555443 21 113456677777777554


Q ss_pred             eccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          282 FSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       282 ~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ...     .  +. .+.++++++.|.+++|.+
T Consensus       170 ~i~-----~--~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          170 GVH-----D--YR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             CCC-----C--CT-TGGGCSSCCEEEECBC--
T ss_pred             CCc-----C--hH-HhccCCCCCEEEeeCccc
Confidence            221     1  11 467778888888888765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.67  E-value=8.5e-09  Score=90.27  Aligned_cols=144  Identities=17%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+....  + ..+..+++|+.|.++++...+.+ ....+++|+.|+|.+..++.-.-   +..++.|+.|+
T Consensus        85 ~~L~~L~L~~n~l~~--~-~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~  157 (308)
T 1h6u_A           85 TKITELELSGNPLKN--V-SAIAGLQSIKTLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLS  157 (308)
T ss_dssp             CSCCEEECCSCCCSC--C-GGGTTCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEE
T ss_pred             CCCCEEEccCCcCCC--c-hhhcCCCCCCEEECCCCCCCCch-hhcCCCCCCEEECCCCccCcCcc---ccCCCCccEEE
Confidence            356666666554322  1 23455666777777666554444 35566677777776666633211   55666777777


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-ceeecCCCCceeEEEeEEe
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMF  282 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~  282 (314)
                      +.+|.. .++ .. .-..++|+.|+++  ++.. ...  .. ....|+|++|++++.... ...+..++.|+.+++..+.
T Consensus       158 l~~n~l-~~~-~~-l~~l~~L~~L~l~--~n~l-~~~--~~-l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          158 IGNAQV-SDL-TP-LANLSKLTTLKAD--DNKI-SDI--SP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CCSSCC-CCC-GG-GTTCTTCCEEECC--SSCC-CCC--GG-GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             ccCCcC-CCC-hh-hcCCCCCCEEECC--CCcc-CcC--hh-hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence            766654 333 22 1133566666665  2221 111  11 224566777776665433 1135566667776666654


Q ss_pred             c
Q 047644          283 S  283 (314)
Q Consensus       283 ~  283 (314)
                      .
T Consensus       229 i  229 (308)
T 1h6u_A          229 I  229 (308)
T ss_dssp             E
T ss_pred             e
Confidence            3

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.65  E-value=1.5e-08  Score=89.92  Aligned_cols=166  Identities=11%  Similarity=0.094  Sum_probs=92.2

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|++..+....  + ..+..+++|++|.++++...+.+ ....+++|+.|++.++.. ..-  .. +..++.|++|
T Consensus        88 ~~L~~L~L~~n~i~~--~-~~~~~l~~L~~L~l~~n~i~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L  160 (347)
T 4fmz_A           88 VKLTNLYIGTNKITD--I-SALQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDL--SP-LSNMTGLNYL  160 (347)
T ss_dssp             TTCCEEECCSSCCCC--C-GGGTTCTTCSEEECTTSCCCCCG-GGTTCTTCCEEECTTCTTCCCC--GG-GTTCTTCCEE
T ss_pred             CcCCEEEccCCcccC--c-hHHcCCCcCCEEECcCCcccCch-hhccCCceeEEECCCCCCcccc--cc-hhhCCCCcEE
Confidence            356666665553222  1 23445666666666666544444 345666666666666643 221  11 5566666776


Q ss_pred             eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEE
Q 047644          203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVM  281 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~  281 (314)
                      ++.+|.. .+. .. .-..++|+.|+++  +|.....   .. ....++|++|.+++...... .+..++.|+++++..+
T Consensus       161 ~l~~~~~-~~~-~~-~~~l~~L~~L~l~--~n~l~~~---~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n  231 (347)
T 4fmz_A          161 TVTESKV-KDV-TP-IANLTDLYSLSLN--YNQIEDI---SP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN  231 (347)
T ss_dssp             ECCSSCC-CCC-GG-GGGCTTCSEEECT--TSCCCCC---GG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS
T ss_pred             EecCCCc-CCc-hh-hccCCCCCEEEcc--CCccccc---cc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC
Confidence            6666654 332 11 1134667777775  3322111   11 22557777777777654422 2567788888887654


Q ss_pred             eccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          282 FSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       282 ~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ....       +.. +..+++++.|.++.|.+
T Consensus       232 ~l~~-------~~~-~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          232 KITD-------LSP-LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             CCCC-------CGG-GTTCTTCCEEECCSSCC
T ss_pred             ccCC-------Ccc-hhcCCCCCEEECCCCcc
Confidence            2211       111 77888999999888865

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.62  E-value=7.3e-09  Score=89.46  Aligned_cols=177  Identities=18%  Similarity=0.073  Sum_probs=118.7

Q ss_pred             CCceEEEEEecCCCccccC-CcccccCCeeEEEEcceeeccc-CCCCcCCCCcceEEeeeEE-cCCCcHHHHhcCCcccc
Q 047644          124 RNVREIEIDLRDHERIPLP-ASIYRSITLEVLRLRSYFALTL-PPDGVCFPRLKTFHLMLQQ-PTNHLPHNLFSRCPCLQ  200 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le  200 (314)
                      .++++|+++.+...  .++ ..+..+++|++|.|+++...+. +.....+++|++|+|.+.. ++.- ....+..++.|+
T Consensus        32 ~~l~~L~l~~n~i~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~-~~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFLHGNRIS--HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred             CCceEEEeeCCcCC--ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc-CHHHhcCCcCCC
Confidence            57888888766432  233 3456789999999999866555 3356689999999999986 4332 134467899999


Q ss_pred             ceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEE
Q 047644          201 HLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAV  277 (314)
Q Consensus       201 ~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~  277 (314)
                      +|++.++.. .+......-..++|+.|+++  ++.. ... .....-..++|++|++++.....+   .+..+++|+.++
T Consensus       109 ~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  183 (285)
T 1ozn_A          109 TLHLDRCGL-QELGPGLFRGLAALQYLYLQ--DNAL-QAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL  183 (285)
T ss_dssp             EEECTTSCC-CCCCTTTTTTCTTCCEEECC--SSCC-CCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             EEECCCCcC-CEECHhHhhCCcCCCEEECC--CCcc-ccc-CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence            999999865 33201111135789999997  3322 111 111112478999999998765422   367789999999


Q ss_pred             EeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          278 YYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       278 l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      +..+...      ......+..+++++.|.++.|.+.
T Consensus       184 l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~  214 (285)
T 1ozn_A          184 LHQNRVA------HVHPHAFRDLGRLMTLYLFANNLS  214 (285)
T ss_dssp             CCSSCCC------EECTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCccc------ccCHhHccCcccccEeeCCCCcCC
Confidence            8764221      112345678999999999998763

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.61  E-value=7.6e-10  Score=96.67  Aligned_cols=175  Identities=12%  Similarity=0.118  Sum_probs=116.3

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC--CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP--DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      .++++|+++.+...  .++..+..+++|++|.++++...+.+.  ....+++|+.|+|.+..++.. ....+..++.|++
T Consensus        78 ~~L~~L~Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~  154 (306)
T 2z66_A           78 TSLKYLDLSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEV  154 (306)
T ss_dssp             SCCCEEECCSCSEE--EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCE
T ss_pred             cccCEEECCCCccc--cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCE
Confidence            57899988876532  456667778999999999986665542  466889999999988876321 2345678899999


Q ss_pred             eeeeeeeccCC--CCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeE
Q 047644          202 LSLTVYFTAAN--PASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKA  276 (314)
Q Consensus       202 L~L~~c~~~~~--~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l  276 (314)
                      |++.++.. .+  . ....-..++|+.|+++  ++.. ....+ ...-..|+|++|++++....   ...+..+++|+.+
T Consensus       155 L~l~~n~l-~~~~~-~~~~~~l~~L~~L~Ls--~n~l-~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  228 (306)
T 2z66_A          155 LKMAGNSF-QENFL-PDIFTELRNLTFLDLS--QCQL-EQLSP-TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL  228 (306)
T ss_dssp             EECTTCEE-GGGEE-CSCCTTCTTCCEEECT--TSCC-CEECT-TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEE
T ss_pred             EECCCCcc-ccccc-hhHHhhCcCCCEEECC--CCCc-CCcCH-HHhcCCCCCCEEECCCCccCccChhhccCcccCCEe
Confidence            99998865 22  1 1111134789999986  3322 11100 11124689999999987654   2246778999999


Q ss_pred             EEeEEeccCCCCCCCChHHHhhcC-CCceEEEeecCCC
Q 047644          277 VYYVMFSEWPPIDRRPPVQLLAGM-TKTKCLTLSAGVL  313 (314)
Q Consensus       277 ~l~~~~~~~~~~~~~~~~~ll~~~-~~l~~L~l~~~~l  313 (314)
                      ++..+....      .....+..+ ++++.|.|++|.+
T Consensus       229 ~L~~N~l~~------~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          229 DYSLNHIMT------SKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             ECTTSCCCB------CSSSSCCCCCTTCCEEECTTCCE
T ss_pred             ECCCCCCcc------cCHHHHHhhhccCCEEEccCCCe
Confidence            987653321      122234556 4899999999876

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.59  E-value=3.6e-08  Score=92.42  Aligned_cols=175  Identities=12%  Similarity=0.093  Sum_probs=121.6

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCCCcceEEeeeEEcCC-CcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFPRLKTFHLMLQQPTN-HLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~  201 (314)
                      .++++|+++.+.......+   ..+++|++|.++++...+ .|.....+++|+.|+|.+..++. ..+...+..++.|+.
T Consensus       302 ~~L~~L~l~~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLCP---SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             CCCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCE
T ss_pred             CceeEEEcCCCccccccch---hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCE
Confidence            4688998887754332221   467999999999986655 34466789999999999998853 345567889999999


Q ss_pred             eeeeeeeccCC-CCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc--eeecCCCCceeEEE
Q 047644          202 LSLTVYFTAAN-PASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS--YAVHQLPSLHKAVY  278 (314)
Q Consensus       202 L~L~~c~~~~~-~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~--~~~~~~p~L~~l~l  278 (314)
                      |+++++.. .+ ++.......++|+.|+++  +|.. ....+..+   .++|++|++++.....  ..+..+++|+++++
T Consensus       379 L~Ls~N~l-~~~l~~~~~~~l~~L~~L~Ls--~N~l-~~~~~~~l---~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L  451 (520)
T 2z7x_B          379 LDISQNSV-SYDEKKGDCSWTKSLLSLNMS--SNIL-TDTIFRCL---PPRIKVLDLHSNKIKSIPKQVVKLEALQELNV  451 (520)
T ss_dssp             EECCSSCC-BCCGGGCSCCCCTTCCEEECC--SSCC-CGGGGGSC---CTTCCEEECCSSCCCCCCGGGGGCTTCCEEEC
T ss_pred             EECCCCcC-CcccccchhccCccCCEEECc--CCCC-Ccchhhhh---cccCCEEECCCCcccccchhhhcCCCCCEEEC
Confidence            99999976 33 311112245799999997  3432 22112222   2799999999986542  23458999999999


Q ss_pred             eEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          279 YVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       279 ~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ..+.....      ....+..+++++.|.+++|.+.
T Consensus       452 ~~N~l~~l------~~~~~~~l~~L~~L~l~~N~~~  481 (520)
T 2z7x_B          452 ASNQLKSV------PDGIFDRLTSLQKIWLHTNPWD  481 (520)
T ss_dssp             CSSCCCCC------CTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCcCCcc------CHHHhccCCcccEEECcCCCCc
Confidence            77533211      1115788999999999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.58  E-value=7.5e-08  Score=89.11  Aligned_cols=166  Identities=14%  Similarity=0.106  Sum_probs=115.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+...  .++. +..+++|++|.++++...+.+ ....+++|++|+|.++.+++-.  . +..++.|++|+
T Consensus        68 ~~L~~L~Ls~n~l~--~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~  140 (466)
T 1o6v_A           68 NNLTQINFSNNQLT--DITP-LKNLTKLVDILMNNNQIADIT-PLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLE  140 (466)
T ss_dssp             TTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEE
T ss_pred             cCCCEEECCCCccC--Cchh-hhccccCCEEECCCCccccCh-hhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEE
Confidence            58899998876533  2333 667899999999888766665 3678899999999988874432  2 78899999999


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCCCceeEEEeEEe
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMF  282 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~  282 (314)
                      +.+|.. .++ .. .-..++|+.|.+.   .....   ... ....++|++|++++..... ..+..+++|+.+++..+.
T Consensus       141 l~~n~l-~~~-~~-~~~l~~L~~L~l~---~~~~~---~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          141 LSSNTI-SDI-SA-LSGLTSLQQLSFG---NQVTD---LKP-LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ  210 (466)
T ss_dssp             EEEEEE-CCC-GG-GTTCTTCSEEEEE---ESCCC---CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred             CCCCcc-CCC-hh-hccCCcccEeecC---CcccC---chh-hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCc
Confidence            999976 444 22 1245788888886   22111   111 2356899999999876542 236778999999887653


Q ss_pred             ccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          283 SEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ...      ...  +..+++++.|.++.|.++
T Consensus       211 l~~------~~~--~~~l~~L~~L~l~~n~l~  234 (466)
T 1o6v_A          211 ISD------ITP--LGILTNLDELSLNGNQLK  234 (466)
T ss_dssp             CCC------CGG--GGGCTTCCEEECCSSCCC
T ss_pred             ccc------ccc--ccccCCCCEEECCCCCcc
Confidence            211      111  678999999999998763

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.57  E-value=1.6e-08  Score=93.27  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=45.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|+|+.+.... ..+..+..+++|++|.|+++.....++ ....+++|++|+|.+..++.- ....+..+|.|+.|
T Consensus        99 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           99 HHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRL  176 (452)
T ss_dssp             TTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEE
Confidence            366777776553221 122344456777777777765544442 244567777777776655311 12234566666666


Q ss_pred             eeeeee
Q 047644          203 SLTVYF  208 (314)
Q Consensus       203 ~L~~c~  208 (314)
                      ++.+|.
T Consensus       177 ~l~~~~  182 (452)
T 3zyi_A          177 DLGELK  182 (452)
T ss_dssp             ECCCCT
T ss_pred             eCCCCC
Confidence            666653

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.57  E-value=1.2e-08  Score=89.49  Aligned_cols=153  Identities=15%  Similarity=0.065  Sum_probs=84.4

Q ss_pred             CCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcC-CCcHHHHh--cCCccccceeeeeeeccCCCCCcEE----Ee
Q 047644          149 ITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPT-NHLPHNLF--SRCPCLQHLSLTVYFTAANPASNLI----IS  220 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~-~~~l~~ll--~~cp~Le~L~L~~c~~~~~~~~~~~----i~  220 (314)
                      ++|++|.|+++.....+ .....+++|+.|+|.+..+. ...+..-+  ..++.|++|++.++.. ... ..+.    -.
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l-~~~-~~~~~~~~~~  226 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM-ETP-SGVCSALAAA  226 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCC-CCH-HHHHHHHHHT
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcC-cch-HHHHHHHHhc
Confidence            56666666665444433 23445666777777666542 11111122  5677777777777654 211 1111    12


Q ss_pred             cCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcC
Q 047644          221 SATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGM  300 (314)
Q Consensus       221 ~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~  300 (314)
                      .++|+.|+++  ++ ......+.......++|++|++++.....+.-.-.++|+.+++.......     .  .. +..+
T Consensus       227 l~~L~~L~Ls--~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~-----~--p~-~~~l  295 (312)
T 1wwl_A          227 RVQLQGLDLS--HN-SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDR-----N--PS-PDEL  295 (312)
T ss_dssp             TCCCSEEECT--TS-CCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCS-----C--CC-TTTS
T ss_pred             CCCCCEEECC--CC-cCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCC-----C--hh-HhhC
Confidence            3688888886  22 22221111222346889999988875542211111678888876543221     1  11 6789


Q ss_pred             CCceEEEeecCCCC
Q 047644          301 TKTKCLTLSAGVLH  314 (314)
Q Consensus       301 ~~l~~L~l~~~~l~  314 (314)
                      ++++.|.+++|.|.
T Consensus       296 ~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          296 PQVGNLSLKGNPFL  309 (312)
T ss_dssp             CEEEEEECTTCTTT
T ss_pred             CCCCEEeccCCCCC
Confidence            99999999999873

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.56  E-value=1.5e-08  Score=88.87  Aligned_cols=201  Identities=12%  Similarity=0.026  Sum_probs=124.0

Q ss_pred             CCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-ccCCCCcCCCCc
Q 047644           96 SSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-TLPPDGVCFPRL  174 (314)
Q Consensus        96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L  174 (314)
                      ..|+.+.+....-.....+...+.  .-..+++|++..+......+|..+..+++|++|.|+++... ..|.....+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~--~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLA--NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGG--GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHh--CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            458888887654322001111111  12578999998422223356777788899999999888655 344356688999


Q ss_pred             ceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccC-CCCCcEEEec-CCcceEEEEeeeeCCCCCCCcceEEEEcCCc
Q 047644          175 KTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAA-NPASNLIISS-ATLKTFVLEVMYCSHSSAPNQHTVTIVAPNL  252 (314)
Q Consensus       175 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~-~~~~~~~i~~-~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L  252 (314)
                      ++|+|.+..++.. +...+..+|.|++|++.++.. . ..+..+. .. +.|+.|+++  ++.. ....+..  +...+|
T Consensus       128 ~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l~-~l~~~L~~L~L~--~N~l-~~~~~~~--~~~l~L  199 (313)
T 1ogq_A          128 VTLDFSYNALSGT-LPPSISSLPNLVGITFDGNRI-SGAIPDSYG-SFSKLFTSMTIS--RNRL-TGKIPPT--FANLNL  199 (313)
T ss_dssp             CEEECCSSEEESC-CCGGGGGCTTCCEEECCSSCC-EEECCGGGG-CCCTTCCEEECC--SSEE-EEECCGG--GGGCCC
T ss_pred             CEEeCCCCccCCc-CChHHhcCCCCCeEECcCCcc-cCcCCHHHh-hhhhcCcEEECc--CCee-eccCChH--HhCCcc
Confidence            9999998887422 334567889999999998854 2 1101111 22 378888886  2211 1000100  111239


Q ss_pred             cEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          253 EFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       253 ~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ++|++++....   ...+..++.|+.+++..+....      .... +..+++++.|.++.|.+
T Consensus       200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~------~~~~-~~~l~~L~~L~Ls~N~l  256 (313)
T 1ogq_A          200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF------DLGK-VGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC------BGGG-CCCCTTCCEEECCSSCC
T ss_pred             cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee------ecCc-ccccCCCCEEECcCCcc
Confidence            99999886543   2346788999999987654321      1222 67889999999999876

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.56  E-value=3.7e-08  Score=85.46  Aligned_cols=164  Identities=16%  Similarity=0.098  Sum_probs=79.0

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      .+++|++..+....  ++ .+..+++|+.|.|+++...+.+ ....+++|+.|+|.+..+++  +.. +..++.|++|++
T Consensus        47 ~L~~L~l~~~~i~~--~~-~~~~l~~L~~L~L~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~L  119 (291)
T 1h6t_A           47 SIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLSL  119 (291)
T ss_dssp             TCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEEC
T ss_pred             cccEEEccCCCccc--Ch-hHhcCCCCCEEEccCCccCCCc-ccccCCCCCEEECCCCcCCC--Chh-hccCCCCCEEEC
Confidence            55666555443221  12 2444566666666665544443 24556666666666665533  222 456666666666


Q ss_pred             eeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCCCceeEEEeEEec
Q 047644          205 TVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMFS  283 (314)
Q Consensus       205 ~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~  283 (314)
                      .+|.. .++ ..+ -..++|+.|+++  ++....   . ...-..++|++|++++..... ..+..++.|+.+++..+..
T Consensus       120 ~~n~i-~~~-~~l-~~l~~L~~L~l~--~n~l~~---~-~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          120 EHNGI-SDI-NGL-VHLPQLESLYLG--NNKITD---I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             TTSCC-CCC-GGG-GGCTTCCEEECC--SSCCCC---C-GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred             CCCcC-CCC-hhh-cCCCCCCEEEcc--CCcCCc---c-hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcC
Confidence            66643 322 111 123556666664  222111   1 111134566666666554331 1245566666666654321


Q ss_pred             cCCCCCCCChHHHhhcCCCceEEEeecCC
Q 047644          284 EWPPIDRRPPVQLLAGMTKTKCLTLSAGV  312 (314)
Q Consensus       284 ~~~~~~~~~~~~ll~~~~~l~~L~l~~~~  312 (314)
                      .       .+. -+..+++++.|.+++|.
T Consensus       191 ~-------~l~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          191 S-------DLR-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             C-------BCG-GGTTCTTCSEEEEEEEE
T ss_pred             C-------CCh-hhccCCCCCEEECcCCc
Confidence            1       111 25566666666666554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.55  E-value=3.3e-09  Score=101.36  Aligned_cols=61  Identities=13%  Similarity=0.073  Sum_probs=25.4

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c  207 (314)
                      .+++|+.|.++++.....|.....+++|+.|+|.+..+....-...+..++.|+.|++.+|
T Consensus       374 ~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          374 GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            3444444444444333333233444555555555444421111122334445555555444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.55  E-value=2.2e-07  Score=85.94  Aligned_cols=187  Identities=14%  Similarity=0.085  Sum_probs=128.8

Q ss_pred             CeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcce
Q 047644           97 SVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKT  176 (314)
Q Consensus        97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~  176 (314)
                      .++.+.+....-.....    +  ....++++|+++.+...  .++. +..+++|++|.++++...+.+ ....+++|++
T Consensus        69 ~L~~L~Ls~n~l~~~~~----~--~~l~~L~~L~l~~n~l~--~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~  138 (466)
T 1o6v_A           69 NLTQINFSNNQLTDITP----L--KNLTKLVDILMNNNQIA--DITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNR  138 (466)
T ss_dssp             TCCEEECCSSCCCCCGG----G--TTCTTCCEEECCSSCCC--CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred             CCCEEECCCCccCCchh----h--hccccCCEEECCCCccc--cChh-hcCCCCCCEEECCCCCCCCCh-HHcCCCCCCE
Confidence            48888887554222211    1  11258999999877533  2333 678899999999998776665 4778999999


Q ss_pred             EEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEE
Q 047644          177 FHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLD  256 (314)
Q Consensus       177 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~  256 (314)
                      |+|.++.+.+-.   -+..++.|++|.+.+..  .+. .. .-..++|+.|+++  +|.....   .. .-..++|++|+
T Consensus       139 L~l~~n~l~~~~---~~~~l~~L~~L~l~~~~--~~~-~~-~~~l~~L~~L~l~--~n~l~~~---~~-l~~l~~L~~L~  205 (466)
T 1o6v_A          139 LELSSNTISDIS---ALSGLTSLQQLSFGNQV--TDL-KP-LANLTTLERLDIS--SNKVSDI---SV-LAKLTNLESLI  205 (466)
T ss_dssp             EEEEEEEECCCG---GGTTCTTCSEEEEEESC--CCC-GG-GTTCTTCCEEECC--SSCCCCC---GG-GGGCTTCSEEE
T ss_pred             EECCCCccCCCh---hhccCCcccEeecCCcc--cCc-hh-hccCCCCCEEECc--CCcCCCC---hh-hccCCCCCEEE
Confidence            999999985532   27899999999997542  222 11 1245789999997  4432211   11 23679999999


Q ss_pred             eecccccc-eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          257 ITDDLAVS-YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       257 l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ++++.... ..++.+++|+++++..+...       .+ ..+..+++++.|.++.|.+.
T Consensus       206 l~~n~l~~~~~~~~l~~L~~L~l~~n~l~-------~~-~~l~~l~~L~~L~l~~n~l~  256 (466)
T 1o6v_A          206 ATNNQISDITPLGILTNLDELSLNGNQLK-------DI-GTLASLTNLTDLDLANNQIS  256 (466)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSCCC-------CC-GGGGGCTTCSEEECCSSCCC
T ss_pred             ecCCcccccccccccCCCCEEECCCCCcc-------cc-hhhhcCCCCCEEECCCCccc
Confidence            99876542 23677899999999764221       11 34788999999999998763

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.55  E-value=1.8e-09  Score=102.19  Aligned_cols=159  Identities=14%  Similarity=0.108  Sum_probs=88.8

Q ss_pred             ccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCc
Q 047644          145 IYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATL  224 (314)
Q Consensus       145 ~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L  224 (314)
                      +..+++|++|.++++.....++....+++|++|+|.++.+........+..++.|++|++.+|.. .+......-..++|
T Consensus       369 ~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L  447 (570)
T 2z63_A          369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSL  447 (570)
T ss_dssp             HHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCC-EECCTTTTTTCTTC
T ss_pred             ccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcc-cccchhhhhcCCcC
Confidence            34455666666666544433323455667777777666653222223456677777777777643 11100001134677


Q ss_pred             ceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCC
Q 047644          225 KTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMT  301 (314)
Q Consensus       225 k~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~  301 (314)
                      +.|+++  +|... ........-.+++|++|+++++.....   .+.++++|+.+++..+...      ......+.+++
T Consensus       448 ~~L~l~--~n~l~-~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~  518 (570)
T 2z63_A          448 EVLKMA--GNSFQ-ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK------SVPDGIFDRLT  518 (570)
T ss_dssp             CEEECT--TCEEG-GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS------CCCTTTTTTCT
T ss_pred             cEEECc--CCcCc-cccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC------CCCHHHhhccc
Confidence            777775  33211 000111122467888888888755422   4567788888888764221      12234567889


Q ss_pred             CceEEEeecCCC
Q 047644          302 KTKCLTLSAGVL  313 (314)
Q Consensus       302 ~l~~L~l~~~~l  313 (314)
                      +++.|.+++|.+
T Consensus       519 ~L~~L~l~~N~~  530 (570)
T 2z63_A          519 SLQKIWLHTNPW  530 (570)
T ss_dssp             TCCEEECCSSCB
T ss_pred             CCcEEEecCCcc
Confidence            999999999876

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.53  E-value=3.9e-08  Score=80.17  Aligned_cols=122  Identities=13%  Similarity=0.135  Sum_probs=83.1

Q ss_pred             CeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCCCcc
Q 047644           97 SVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFPRLK  175 (314)
Q Consensus        97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~~L~  175 (314)
                      .++.+.+....-.+-..    +  ....++++|++..+..   ..+..+..+++|++|.++++...+ .+.....+++|+
T Consensus        45 ~L~~L~l~~n~i~~l~~----l--~~l~~L~~L~l~~n~~---~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           45 SLTYITLANINVTDLTG----I--EYAHNIKDLTINNIHA---TNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             TCCEEEEESSCCSCCTT----G--GGCTTCSEEEEESCCC---SCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             CccEEeccCCCccChHH----H--hcCCCCCEEEccCCCC---CcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            37888887554222111    1  1125899999998843   223456778999999999986654 344667899999


Q ss_pred             eEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEE
Q 047644          176 TFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLE  230 (314)
Q Consensus       176 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~  230 (314)
                      .|+|.++.+++... ..+..+|.|++|++.+|....++ .. --..++|+.|+++
T Consensus       116 ~L~Ls~n~i~~~~~-~~l~~l~~L~~L~L~~n~~i~~~-~~-l~~l~~L~~L~l~  167 (197)
T 4ezg_A          116 LLDISHSAHDDSIL-TKINTLPKVNSIDLSYNGAITDI-MP-LKTLPELKSLNIQ  167 (197)
T ss_dssp             EEECCSSBCBGGGH-HHHTTCSSCCEEECCSCTBCCCC-GG-GGGCSSCCEEECT
T ss_pred             EEEecCCccCcHhH-HHHhhCCCCCEEEccCCCCcccc-Hh-hcCCCCCCEEECC
Confidence            99999999865444 45679999999999999631444 21 1134567777775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.52  E-value=1e-07  Score=89.85  Aligned_cols=178  Identities=13%  Similarity=0.074  Sum_probs=92.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      ..+++|+++.+... ...+..+..+++|++|.|+++...+.+ .....+++|++|+|.+..++.. ....+..++.|++|
T Consensus        26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  103 (549)
T 2z81_A           26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL  103 (549)
T ss_dssp             TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred             CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence            36677777665422 122344556777777777777555443 2455677777777777766432 23345677777777


Q ss_pred             eeeeeeccCCCC-CcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEE
Q 047644          203 SLTVYFTAANPA-SNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVY  278 (314)
Q Consensus       203 ~L~~c~~~~~~~-~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l  278 (314)
                      +++++.. .+.. ....-..++|+.|+++  ++...... +....-..++|++|++++.....   ..+.+++.|+++++
T Consensus       104 ~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~--~n~~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  179 (549)
T 2z81_A          104 NLMGNPY-QTLGVTSLFPNLTNLQTLRIG--NVETFSEI-RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL  179 (549)
T ss_dssp             ECTTCCC-SSSCSSCSCTTCTTCCEEEEE--ESSSCCEE-CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             ECCCCcc-cccchhhhhhccCCccEEECC--CCcccccc-CHhhhhcccccCeeeccCCcccccChhhhhccccCceEec
Confidence            7777754 2210 0111134577777776  33211110 00001135667777777654331   23445566666665


Q ss_pred             eEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          279 YVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       279 ~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      .....      ......+...+++++.|.++.|.+
T Consensus       180 ~~n~~------~~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          180 HLSES------AFLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             ECSBS------TTHHHHHHHSTTTBSEEEEESCBC
T ss_pred             ccCcc------cccchhhHhhcccccEEEccCCcc
Confidence            54311      111222334556666666655543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.51  E-value=4.9e-08  Score=83.62  Aligned_cols=174  Identities=18%  Similarity=0.175  Sum_probs=114.1

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      +++.++++...  -..+|..+  .++|+.|.|+++.....++ ....+++|+.|+|.+..++.- ...++..++.|++|+
T Consensus        17 ~~~~l~~~~~~--l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           17 NKNSVDCSSKK--LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLW   91 (270)
T ss_dssp             TTTEEECTTSC--CSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEE
T ss_pred             CCCEEEccCCC--CCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEE
Confidence            34555554432  22345433  2689999999987666653 466899999999999887432 234567899999999


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV  280 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~  280 (314)
                      |.++.. ..+.....-..++|+.|+++  ++.. ... .....-..++|++|++++.....+   .+..+++|+++++..
T Consensus        92 l~~n~l-~~~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           92 VTDNKL-QALPIGVFDQLVNLAELRLD--RNQL-KSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CCSSCC-CCCCTTTTTTCSSCCEEECC--SSCC-CCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCcC-CcCCHhHcccccCCCEEECC--CCcc-Cee-CHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            999865 33311111245789999997  3322 211 111112568999999998765422   367789999999976


Q ss_pred             EeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      +...      ......+.++++++.|.|+.|.|+
T Consensus       167 n~l~------~~~~~~~~~l~~L~~L~L~~N~l~  194 (270)
T 2o6q_A          167 NQLK------RVPEGAFDKLTELKTLKLDNNQLK  194 (270)
T ss_dssp             SCCS------CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CcCc------EeChhHhccCCCcCEEECCCCcCC
Confidence            4221      112234678999999999998763

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.50  E-value=2.2e-08  Score=95.66  Aligned_cols=59  Identities=19%  Similarity=0.042  Sum_probs=25.9

Q ss_pred             cccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          146 YRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       146 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      ..+++|+.|.|+++.+.+.+ ....+++|+.|+|.++.+.+-  . -+..||.|+.|+|++|.
T Consensus        84 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~  142 (605)
T 1m9s_A           84 TNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI--N-GLVHLPQLESLYLGNNK  142 (605)
T ss_dssp             GGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC--G-GGGGCTTCSEEECCSSC
T ss_pred             ccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC--c-cccCCCccCEEECCCCc
Confidence            34445555555444333333 334444555555544444221  1 13344555555554443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.50  E-value=1.2e-08  Score=94.05  Aligned_cols=179  Identities=17%  Similarity=0.055  Sum_probs=102.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|+|+.+.... ..+..+..+++|+.|.|+++.....+ .....+++|+.|+|.+..++.- ....+..++.|++|
T Consensus        75 ~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L  152 (452)
T 3zyi_A           75 SNTRYLNLMENNIQM-IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLREL  152 (452)
T ss_dssp             TTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEE
T ss_pred             CCccEEECcCCcCce-ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEE
Confidence            578999988765322 22445667899999999998665554 3556799999999999887432 23446789999999


Q ss_pred             eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCC---c------ceE------------EEEcCCccEEEeeccc
Q 047644          203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPN---Q------HTV------------TIVAPNLEFLDITDDL  261 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~---~------~~l------------~~~~p~L~~L~l~~~~  261 (314)
                      +|.++.. ..+.....-..++|+.|++.  .|.......   .      ..+            ....++|++|++++..
T Consensus       153 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~--~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          153 WLRNNPI-ESIPSYAFNRVPSLMRLDLG--ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             ECCSCCC-CEECTTTTTTCTTCCEEECC--CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred             ECCCCCc-ceeCHhHHhcCCcccEEeCC--CCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence            9999854 21100000123566666664  222211000   0      000            0123455555555543


Q ss_pred             ccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          262 AVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       262 ~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ...   ..+.++++|+++++..+...      ......+.++++++.|.|+.|.|
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l  278 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVS------LIERNAFDGLASLVELNLAHNNL  278 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCC
T ss_pred             CcccCcccccCccCCCEEEeCCCcCc------eECHHHhcCCCCCCEEECCCCcC
Confidence            321   23445556665555433111      11123456778888888888765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.50  E-value=2.5e-08  Score=91.61  Aligned_cols=153  Identities=17%  Similarity=0.069  Sum_probs=71.0

Q ss_pred             cCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644          148 SITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT  226 (314)
Q Consensus       148 c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~  226 (314)
                      +++|+.|.|+++.....+. ....+++|+.|+|.++..-..--...+.++++|++|+|.+|.. ..+ .. ....++|+.
T Consensus       135 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~-~~-~~~l~~L~~  211 (440)
T 3zyj_A          135 LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL-REI-PN-LTPLIKLDE  211 (440)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC-SSC-CC-CTTCSSCCE
T ss_pred             cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC-ccc-cc-cCCCcccCE
Confidence            4455555554443333321 2334455555555443210000112234455555555555543 222 11 012345666


Q ss_pred             EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCc
Q 047644          227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT  303 (314)
Q Consensus       227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l  303 (314)
                      |+++  ++.. .... ....-..++|++|.+++.....   ..+.++++|+.+++..+...      ......+..++++
T Consensus       212 L~Ls--~N~l-~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L  281 (440)
T 3zyj_A          212 LDLS--GNHL-SAIR-PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT------LLPHDLFTPLHHL  281 (440)
T ss_dssp             EECT--TSCC-CEEC-TTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC------CCCTTTTSSCTTC
T ss_pred             EECC--CCcc-CccC-hhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC------ccChhHhccccCC
Confidence            6664  2211 1000 0001134667777766654432   23456677777777654221      1223456778888


Q ss_pred             eEEEeecCCC
Q 047644          304 KCLTLSAGVL  313 (314)
Q Consensus       304 ~~L~l~~~~l  313 (314)
                      +.|.|++|++
T Consensus       282 ~~L~L~~Np~  291 (440)
T 3zyj_A          282 ERIHLHHNPW  291 (440)
T ss_dssp             CEEECCSSCE
T ss_pred             CEEEcCCCCc
Confidence            8888888875

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.50  E-value=2e-08  Score=89.51  Aligned_cols=41  Identities=12%  Similarity=0.121  Sum_probs=23.8

Q ss_pred             ecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          267 VHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       267 ~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      +..+++|+++++..+...      .....++.++++++.|.|++|.+
T Consensus       273 l~~l~~L~~L~Ls~N~l~------~i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          273 LNQISGLLELEFSRNQLK------SVPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             HHTCTTCCEEECCSSCCC------CCCTTTTTTCTTCCEEECCSSCB
T ss_pred             HhcccCCCEEECCCCCCC------ccCHHHHhcCCCCCEEEeeCCCc
Confidence            345667777766544221      11122346777788888877765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.50  E-value=4.3e-08  Score=83.08  Aligned_cols=153  Identities=18%  Similarity=0.080  Sum_probs=75.0

Q ss_pred             CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      ++|+.|.|+++.....++ ....+++|+.|+|.+..++.. ....+..++.|++|+|.++.. ..+.....-..++|+.|
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCEE
Confidence            456666666654444331 234566666666666555321 123345566666666666543 22200000123556666


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCce
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTK  304 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~  304 (314)
                      +++  ++ ..... .....-..++|++|++++.....+   .+..+++|+.+++......      ......+..+++++
T Consensus       113 ~L~--~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~------~~~~~~~~~l~~L~  182 (251)
T 3m19_A          113 YLG--GN-QLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ------SVPHGAFDRLGKLQ  182 (251)
T ss_dssp             ECC--SS-CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS------CCCTTTTTTCTTCC
T ss_pred             EcC--CC-cCCCc-ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC------ccCHHHHhCCCCCC
Confidence            664  22 11110 011111356677777766543311   2455677777776554221      11223456677777


Q ss_pred             EEEeecCCC
Q 047644          305 CLTLSAGVL  313 (314)
Q Consensus       305 ~L~l~~~~l  313 (314)
                      .|.|++|.+
T Consensus       183 ~L~l~~N~~  191 (251)
T 3m19_A          183 TITLFGNQF  191 (251)
T ss_dssp             EEECCSCCB
T ss_pred             EEEeeCCce
Confidence            777777765

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.49  E-value=2.8e-08  Score=91.29  Aligned_cols=173  Identities=17%  Similarity=0.162  Sum_probs=114.8

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|+|+.+.... -.+..+..+++|++|.|+++.....+. ....+++|+.|+|.+..++.- ....+..++.|++|
T Consensus        88 ~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           88 RHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRL  165 (440)
T ss_dssp             SSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCc-cChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEe
Confidence            478888887764322 122345567899999999886666653 456789999999988876321 12346788999999


Q ss_pred             eeeeeeccCCCCCcEE----EecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCcee
Q 047644          203 SLTVYFTAANPASNLI----ISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHK  275 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~----i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~  275 (314)
                      +|.+|..   . ..+.    -..++|+.|+++  ++......   . ....++|++|++++.....   ..+.++++|++
T Consensus       166 ~l~~~~~---l-~~i~~~~~~~l~~L~~L~L~--~n~l~~~~---~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          166 DLGELKR---L-SYISEGAFEGLSNLRYLNLA--MCNLREIP---N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK  235 (440)
T ss_dssp             ECCCCTT---C-CEECTTTTTTCSSCCEEECT--TSCCSSCC---C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCCC---c-ceeCcchhhcccccCeecCC--CCcCcccc---c-cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence            9998754   2 1111    134788888886  33322111   1 2356889999999876542   34677899999


Q ss_pred             EEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          276 AVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       276 l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      +++..+...      ......+.++++++.|.|+.|.|.
T Consensus       236 L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l~  268 (440)
T 3zyj_A          236 LWMIQSQIQ------VIERNAFDNLQSLVEINLAHNNLT  268 (440)
T ss_dssp             EECTTCCCC------EECTTSSTTCTTCCEEECTTSCCC
T ss_pred             EECCCCcee------EEChhhhcCCCCCCEEECCCCCCC
Confidence            988754221      112234678999999999998763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.49  E-value=1.3e-07  Score=89.53  Aligned_cols=183  Identities=12%  Similarity=0.085  Sum_probs=124.4

Q ss_pred             HHHHHHH-hCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCCCcCCCCcceEEeeeEEcC-CCcHHHH
Q 047644          116 YWVSSAI-SRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPDGVCFPRLKTFHLMLQQPT-NHLPHNL  192 (314)
Q Consensus       116 ~w~~~~~-~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~~~~~~~L~~L~L~~~~~~-~~~l~~l  192 (314)
                      .|+.... ..++++|+++.+.......+   ..+++|++|.++++...+ .|.....+++|+.|+|.+..++ -..+...
T Consensus       322 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  398 (562)
T 3a79_B          322 EALYSVFAEMNIKMLSISDTPFIHMVCP---PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM  398 (562)
T ss_dssp             HHHHHHHHTCCCSEEEEESSCCCCCCCC---SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT
T ss_pred             hhhhhhhccCcceEEEccCCCcccccCc---cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh
Confidence            3444333 24789999988754332221   467899999999986655 3445678999999999999884 3455667


Q ss_pred             hcCCccccceeeeeeeccCC-CCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce--eecC
Q 047644          193 FSRCPCLQHLSLTVYFTAAN-PASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY--AVHQ  269 (314)
Q Consensus       193 l~~cp~Le~L~L~~c~~~~~-~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~--~~~~  269 (314)
                      +..++.|++|+++++.. .+ ++.......++|+.|+++  ++. .....+..+   .++|++|++++.....+  .+..
T Consensus       399 ~~~l~~L~~L~l~~N~l-~~~~~~~~~~~l~~L~~L~l~--~n~-l~~~~~~~l---~~~L~~L~L~~N~l~~ip~~~~~  471 (562)
T 3a79_B          399 TKNMSSLETLDVSLNSL-NSHAYDRTCAWAESILVLNLS--SNM-LTGSVFRCL---PPKVKVLDLHNNRIMSIPKDVTH  471 (562)
T ss_dssp             TTTCTTCCEEECTTSCC-BSCCSSCCCCCCTTCCEEECC--SSC-CCGGGGSSC---CTTCSEEECCSSCCCCCCTTTTS
T ss_pred             hcCCCCCCEEECCCCcC-CCccChhhhcCcccCCEEECC--CCC-CCcchhhhh---cCcCCEEECCCCcCcccChhhcC
Confidence            88999999999999976 33 311222345899999997  332 222112211   17999999998865422  2447


Q ss_pred             CCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          270 LPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       270 ~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      +++|+.+++..+....-      ....+..+++++.|.+++|.+.
T Consensus       472 l~~L~~L~L~~N~l~~l------~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          472 LQALQELNVASNQLKSV------PDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             SCCCSEEECCSSCCCCC------CTTSTTTCTTCCCEECCSCCBC
T ss_pred             CCCCCEEECCCCCCCCC------CHHHHhcCCCCCEEEecCCCcC
Confidence            89999999976533211      1114788999999999999874

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.48  E-value=5.2e-08  Score=95.87  Aligned_cols=156  Identities=17%  Similarity=0.082  Sum_probs=93.2

Q ss_pred             cccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcc
Q 047644          146 YRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLK  225 (314)
Q Consensus       146 ~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk  225 (314)
                      ..+++|++|+|+++.....++....+++|++|+|.++.++.. +...+..|+.|++|++.+|.. .+....  ...++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l-~~~~~~--~~l~~L~  272 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQF-VGPIPP--LPLKSLQ  272 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCC-EESCCC--CCCTTCC
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcc-cCccCc--cccCCCC
Confidence            467788888887775554332466788888888888877433 556678888888888888855 211011  1567788


Q ss_pred             eEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCC
Q 047644          226 TFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTK  302 (314)
Q Consensus       226 ~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~  302 (314)
                      .|++.  +|.. ....+..+.-.+++|++|++++....   ...++++++|+++++..+...+     ......+..+++
T Consensus       273 ~L~L~--~n~l-~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-----~ip~~~l~~l~~  344 (768)
T 3rgz_A          273 YLSLA--ENKF-TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG-----ELPMDTLLKMRG  344 (768)
T ss_dssp             EEECC--SSEE-EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE-----ECCHHHHTTCTT
T ss_pred             EEECc--CCcc-CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC-----cCCHHHHhcCCC
Confidence            88876  3321 10111111112477888888776432   2345677777777776543221     112234566777


Q ss_pred             ceEEEeecCCC
Q 047644          303 TKCLTLSAGVL  313 (314)
Q Consensus       303 l~~L~l~~~~l  313 (314)
                      ++.|.++.|.+
T Consensus       345 L~~L~Ls~n~l  355 (768)
T 3rgz_A          345 LKVLDLSFNEF  355 (768)
T ss_dssp             CCEEECCSSEE
T ss_pred             CCEEeCcCCcc
Confidence            77777766643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.47  E-value=4.6e-08  Score=83.63  Aligned_cols=57  Identities=18%  Similarity=0.095  Sum_probs=24.8

Q ss_pred             cCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          148 SITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       148 c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      +++|+.|.++++...+.+ ....+++|+.|+|.+..+++-.  . +..++.|+.|+++++.
T Consensus        40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~   96 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR   96 (263)
T ss_dssp             HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC
T ss_pred             cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc
Confidence            344444444444333333 3334444555555444442211  1 3444555555555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.47  E-value=1.9e-08  Score=95.24  Aligned_cols=82  Identities=17%  Similarity=0.051  Sum_probs=40.8

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC--------------------CCcCCCCcceEEeeeEE
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP--------------------DGVCFPRLKTFHLMLQQ  183 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~--------------------~~~~~~~L~~L~L~~~~  183 (314)
                      .++++|++..+...  .+|..+..+ +|+.|.++++.....|.                    ....+++|+.|+|.+..
T Consensus       282 ~~L~~L~l~~~~l~--~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~  358 (570)
T 2z63_A          282 TNVSSFSLVSVTIE--RVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG  358 (570)
T ss_dssp             TTCSEEEEESCEEC--SCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSC
T ss_pred             CcccEEEecCccch--hhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCc
Confidence            46777777665422  345545555 66666666654443321                    11344555555554444


Q ss_pred             cCC-CcHHHHhcCCccccceeeeeee
Q 047644          184 PTN-HLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       184 ~~~-~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      ++. ......+..++.|++|++.+|.
T Consensus       359 l~~~~~~~~~~~~~~~L~~L~l~~n~  384 (570)
T 2z63_A          359 LSFKGCCSQSDFGTTSLKYLDLSFNG  384 (570)
T ss_dssp             CBEEEEEEHHHHTCSCCCEEECCSCS
T ss_pred             cCccccccccccccCccCEEECCCCc
Confidence            311 1112334455666666666553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.47  E-value=1.9e-08  Score=95.99  Aligned_cols=82  Identities=18%  Similarity=0.177  Sum_probs=43.6

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      ++++|+++.+...  .+|..+..+++|++|.++++...+.+ .....+++|+.|.|.+..+........+..++.|++|+
T Consensus       279 ~L~~L~l~~n~l~--~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          279 GLQELDLTATHLS--ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD  356 (606)
T ss_dssp             TCSEEECTTSCCS--CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred             CCCEEeccCCccC--CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence            5566666554322  45555566666777766666443332 23445666666666665442111122345566666666


Q ss_pred             eeeee
Q 047644          204 LTVYF  208 (314)
Q Consensus       204 L~~c~  208 (314)
                      +.++.
T Consensus       357 l~~n~  361 (606)
T 3t6q_A          357 LSHDD  361 (606)
T ss_dssp             CCSSC
T ss_pred             CCCCc
Confidence            66653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.46  E-value=1.1e-08  Score=89.68  Aligned_cols=198  Identities=12%  Similarity=0.003  Sum_probs=122.7

Q ss_pred             CCeeEEEEEe-ccC--CCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeec-ccCCCCcCC
Q 047644           96 SSVEKFSLRC-SYL--RSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFAL-TLPPDGVCF  171 (314)
Q Consensus        96 ~~l~~l~l~~-~~~--~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~-~~~~~~~~~  171 (314)
                      +.++.+.+.. ..-  .-+..+      ....++++|+++.+... ..+|..+..+++|++|.|+++... ..|.....+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l------~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  148 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAI------AKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL  148 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGG------GGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC
T ss_pred             CCCCeeeCCCCCcccccCChhH------hcCCCCCEEECcCCeeC-CcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcC
Confidence            3488888873 321  111211      11258999999887532 356777788899999999998665 344456789


Q ss_pred             CCcceEEeeeEEcCCCcHHHHhcCCc-cccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcC
Q 047644          172 PRLKTFHLMLQQPTNHLPHNLFSRCP-CLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAP  250 (314)
Q Consensus       172 ~~L~~L~L~~~~~~~~~l~~ll~~cp-~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p  250 (314)
                      ++|++|+|.+..++.. +..-+..++ .|++|++.++.. .+. ..-.+...+|+.|+++  ++.. ... .....-..+
T Consensus       149 ~~L~~L~L~~N~l~~~-~p~~l~~l~~~L~~L~L~~N~l-~~~-~~~~~~~l~L~~L~Ls--~N~l-~~~-~~~~~~~l~  221 (313)
T 1ogq_A          149 PNLVGITFDGNRISGA-IPDSYGSFSKLFTSMTISRNRL-TGK-IPPTFANLNLAFVDLS--RNML-EGD-ASVLFGSDK  221 (313)
T ss_dssp             TTCCEEECCSSCCEEE-CCGGGGCCCTTCCEEECCSSEE-EEE-CCGGGGGCCCSEEECC--SSEE-EEC-CGGGCCTTS
T ss_pred             CCCCeEECcCCcccCc-CCHHHhhhhhcCcEEECcCCee-ecc-CChHHhCCcccEEECc--CCcc-cCc-CCHHHhcCC
Confidence            9999999998877322 233345666 999999998865 211 0001122238888886  2211 111 111122567


Q ss_pred             CccEEEeeccccc--ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          251 NLEFLDITDDLAV--SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       251 ~L~~L~l~~~~~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      +|++|++++....  ...+..+++|+++++..+...      +.+...+..+++++.|.|+.|.+
T Consensus       222 ~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~------~~~p~~l~~l~~L~~L~Ls~N~l  280 (313)
T 1ogq_A          222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCE------ECCCGGGGGCTTCCEEECCSSEE
T ss_pred             CCCEEECCCCceeeecCcccccCCCCEEECcCCccc------CcCChHHhcCcCCCEEECcCCcc
Confidence            8888888876443  122566788888888654321      12334567788888888888754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.46  E-value=3.1e-08  Score=87.39  Aligned_cols=80  Identities=15%  Similarity=0.135  Sum_probs=37.9

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|++..+.... ..|..+..+++|++|.|+++.....|.  ..+++|++|+|.+..++.. ....+..++.|+.|+
T Consensus        76 ~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~--~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~  151 (330)
T 1xku_A           76 KNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKNQLKELPE--KMPKTLQELRVHENEITKV-RKSVFNGLNQMIVVE  151 (330)
T ss_dssp             TTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCSBCCS--SCCTTCCEEECCSSCCCBB-CHHHHTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCe-eCHHHhcCCCCCCEEECCCCcCCccCh--hhcccccEEECCCCccccc-CHhHhcCCccccEEE
Confidence            356666665543221 123444455666666666654444431  1225555555555544221 123344555555555


Q ss_pred             eeee
Q 047644          204 LTVY  207 (314)
Q Consensus       204 L~~c  207 (314)
                      +.++
T Consensus       152 l~~n  155 (330)
T 1xku_A          152 LGTN  155 (330)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            5544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.46  E-value=1.9e-07  Score=86.24  Aligned_cols=160  Identities=14%  Similarity=0.022  Sum_probs=84.4

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      ++++|+++.+.....  +  +..+++|++|.++++...+.  ....+++|+.|+|.+..++.-.    +..++.|++|++
T Consensus        86 ~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l--~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l  155 (457)
T 3bz5_A           86 NLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKL--DVSQNPLLTYLNCARNTLTEID----VSHNTQLTELDC  155 (457)
T ss_dssp             TCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCC--CCTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEEC
T ss_pred             CCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCee--cCCCCCcCCEEECCCCccceec----cccCCcCCEEEC
Confidence            455555544432221  1  33455555555555543333  2345555566655555553211    445566666666


Q ss_pred             eeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEEeEEec
Q 047644          205 TVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFS  283 (314)
Q Consensus       205 ~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~  283 (314)
                      .+|....    .+.+ ..++|+.|+++  ++. ...-  .  .-..++|+.|.+++.......+..++.|+.+++..+..
T Consensus       156 ~~n~~~~----~~~~~~l~~L~~L~ls--~n~-l~~l--~--l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l  224 (457)
T 3bz5_A          156 HLNKKIT----KLDVTPQTQLTTLDCS--FNK-ITEL--D--VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKL  224 (457)
T ss_dssp             TTCSCCC----CCCCTTCTTCCEEECC--SSC-CCCC--C--CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCC
T ss_pred             CCCCccc----ccccccCCcCCEEECC--CCc-ccee--c--cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcc
Confidence            6553211    1111 23566666665  222 1111  1  12456777777777665545567777777777765422


Q ss_pred             cCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          284 EWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       284 ~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      .     .  +.  +..+++++.|.++.|.++
T Consensus       225 ~-----~--ip--~~~l~~L~~L~l~~N~l~  246 (457)
T 3bz5_A          225 T-----E--ID--VTPLTQLTYFDCSVNPLT  246 (457)
T ss_dssp             S-----C--CC--CTTCTTCSEEECCSSCCS
T ss_pred             c-----c--cC--ccccCCCCEEEeeCCcCC
Confidence            2     1  11  667888888888888763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.46  E-value=1.6e-07  Score=82.69  Aligned_cols=194  Identities=12%  Similarity=0.056  Sum_probs=127.1

Q ss_pred             CCeeEEEEEeccCCC--cchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCC
Q 047644           96 SSVEKFSLRCSYLRS--LGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFP  172 (314)
Q Consensus        96 ~~l~~l~l~~~~~~~--~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~  172 (314)
                      ..++.+.+....-..  ...+    .  ...++++|+++.+...  .+|..+.  ++|++|.++++.....++ ....++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~----~--~l~~L~~L~Ls~n~l~--~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~  145 (330)
T 1xku_A           76 KNLHTLILINNKISKISPGAF----A--PLVKLERLYLSKNQLK--ELPEKMP--KTLQELRVHENEITKVRKSVFNGLN  145 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTT----T--TCTTCCEEECCSSCCS--BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCT
T ss_pred             CCCCEEECCCCcCCeeCHHHh----c--CCCCCCEEECCCCcCC--ccChhhc--ccccEEECCCCcccccCHhHhcCCc
Confidence            348888876543211  1111    0  1257999999876533  4555443  799999999986655542 346789


Q ss_pred             CcceEEeeeEEcCC-CcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCC
Q 047644          173 RLKTFHLMLQQPTN-HLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPN  251 (314)
Q Consensus       173 ~L~~L~L~~~~~~~-~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~  251 (314)
                      +|+.|+|.+..+.. ......+..++.|++|++.++.. ..++..+   .++|+.|+++  ++.. ....+ ...-..++
T Consensus       146 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l~~~~---~~~L~~L~l~--~n~l-~~~~~-~~~~~l~~  217 (330)
T 1xku_A          146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL---PPSLTELHLD--GNKI-TKVDA-ASLKGLNN  217 (330)
T ss_dssp             TCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSC---CTTCSEEECT--TSCC-CEECT-GGGTTCTT
T ss_pred             cccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-ccCCccc---cccCCEEECC--CCcC-CccCH-HHhcCCCC
Confidence            99999999987732 23345567899999999999865 4331112   2789999986  2321 11101 11125689


Q ss_pred             ccEEEeecccccce---eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          252 LEFLDITDDLAVSY---AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       252 L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      |++|++++......   .+..+++|+++++..+...       .+...+..+++++.|.++.|.|.
T Consensus       218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-------KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-------SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-------cCChhhccCCCcCEEECCCCcCC
Confidence            99999998765422   4677899999999765322       22233678999999999999764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.45  E-value=1e-07  Score=88.41  Aligned_cols=179  Identities=14%  Similarity=0.044  Sum_probs=91.9

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|+++.+.... ..+..+..+++|+.|.|+++.....+ .....+++|++|+|.++.++.- ....+..++.|+.|
T Consensus       104 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L  181 (477)
T 2id5_A          104 SNLTKLDISENKIVI-LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVL  181 (477)
T ss_dssp             TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEE
T ss_pred             CCCCEEECCCCcccc-CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEE
Confidence            466777776553221 22334555677777777776443332 2445677888888887776432 23456777888888


Q ss_pred             eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCC----------------------CCcceEEEEcCCccEEEeecc
Q 047644          203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSA----------------------PNQHTVTIVAPNLEFLDITDD  260 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~----------------------~~~~~l~~~~p~L~~L~l~~~  260 (314)
                      +|.++.. ........-..++|+.|+++  +|.....                      .-+....-..++|++|++++.
T Consensus       182 ~l~~n~i-~~~~~~~~~~l~~L~~L~l~--~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  258 (477)
T 2id5_A          182 RLRHLNI-NAIRDYSFKRLYRLKVLEIS--HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN  258 (477)
T ss_dssp             EEESCCC-CEECTTCSCSCTTCCEEEEE--CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS
T ss_pred             eCCCCcC-cEeChhhcccCcccceeeCC--CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC
Confidence            8877643 11100001123455566554  2321110                      000000112355555555554


Q ss_pred             cccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          261 LAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       261 ~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ....   ..+.++++|+++++..+...      ......+.++++++.|.|+.|.|
T Consensus       259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~------~~~~~~~~~l~~L~~L~L~~N~l  308 (477)
T 2id5_A          259 PISTIEGSMLHELLRLQEIQLVGGQLA------VVEPYAFRGLNYLRVLNVSGNQL  308 (477)
T ss_dssp             CCCEECTTSCTTCTTCCEEECCSSCCS------EECTTTBTTCTTCCEEECCSSCC
T ss_pred             cCCccChhhccccccCCEEECCCCccc------eECHHHhcCcccCCEEECCCCcC
Confidence            3321   12445556666555433111      11123456788888888888765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.45  E-value=5.3e-08  Score=83.53  Aligned_cols=153  Identities=15%  Similarity=0.087  Sum_probs=108.6

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT  226 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~  226 (314)
                      ..++|+.|.+.++.....+ ....+++|+.|+|.+..+++-  . .+..++.|++|++.+|.. .+......-..++|+.
T Consensus        39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCE
Confidence            4689999999998766665 677899999999999988542  2 567999999999999965 4331111124578999


Q ss_pred             EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCc
Q 047644          227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT  303 (314)
Q Consensus       227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l  303 (314)
                      |+++  ++... .. .....-..++|++|++++......   .+..+++|+.+++..+...      ......+.+++++
T Consensus       114 L~L~--~n~l~-~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------~~~~~~~~~l~~L  183 (272)
T 3rfs_A          114 LVLV--ENQLQ-SL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ------SLPEGVFDKLTQL  183 (272)
T ss_dssp             EECT--TSCCC-CC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC------CCCTTTTTTCTTC
T ss_pred             EECC--CCcCC-cc-CHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC------ccCHHHhcCCccC
Confidence            9996  34321 11 111122568999999999865422   2578899999999875332      2233457789999


Q ss_pred             eEEEeecCCCC
Q 047644          304 KCLTLSAGVLH  314 (314)
Q Consensus       304 ~~L~l~~~~l~  314 (314)
                      +.|.++.|.+.
T Consensus       184 ~~L~L~~N~l~  194 (272)
T 3rfs_A          184 KDLRLYQNQLK  194 (272)
T ss_dssp             CEEECCSSCCS
T ss_pred             CEEECCCCcCC
Confidence            99999998763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=6.9e-09  Score=82.60  Aligned_cols=96  Identities=7%  Similarity=0.044  Sum_probs=58.4

Q ss_pred             ccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEE-cCCCcHHHHhcC---CccccceeeeeeeccCCCC
Q 047644          140 PLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQ-PTNHLPHNLFSR---CPCLQHLSLTVYFTAANPA  214 (314)
Q Consensus       140 ~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~---cp~Le~L~L~~c~~~~~~~  214 (314)
                      .+|..-.....|++|++++|...+.- ....++++|++|+|.+|. ++|.++..+...   ||.||+|+|++|...+|. 
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~-  130 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK-  130 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH-
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH-
Confidence            45543334567888888887543321 123467888888888885 488888877763   778888888888643332 


Q ss_pred             CcEEE-ecCCcceEEEEeeeeCCCC
Q 047644          215 SNLII-SSATLKTFVLEVMYCSHSS  238 (314)
Q Consensus       215 ~~~~i-~~~~Lk~L~i~~~~c~~~~  238 (314)
                      +...+ .+++|++|+++  +|...+
T Consensus       131 Gl~~L~~~~~L~~L~L~--~c~~It  153 (176)
T 3e4g_A          131 GIIALHHFRNLKYLFLS--DLPGVK  153 (176)
T ss_dssp             HHHHGGGCTTCCEEEEE--SCTTCC
T ss_pred             HHHHHhcCCCCCEEECC--CCCCCC
Confidence            11111 34666666665  554433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.44  E-value=1.5e-08  Score=88.76  Aligned_cols=155  Identities=13%  Similarity=0.042  Sum_probs=89.3

Q ss_pred             ccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEc-CCCcHH--HHhcCCccccceeeeeeeccCCCCCcE----E
Q 047644          147 RSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQP-TNHLPH--NLFSRCPCLQHLSLTVYFTAANPASNL----I  218 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~-~~~~l~--~ll~~cp~Le~L~L~~c~~~~~~~~~~----~  218 (314)
                      .+++|++|.|+++.....+ .....+++|++|+|.+..+ ++..+.  ..+..+|.|++|+|++|.. ..+ ...    .
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l-~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETP-TGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCH-HHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-Cch-HHHHHHHH
Confidence            4567777777776554443 2344677777777777764 221121  1124677788888887754 222 111    1


Q ss_pred             EecCCcceEEEEeeeeCCCCCCCcceEEE--EcCCccEEEeecccccceeecCCCCceeEEEeEEeccCCCCCCCChHHH
Q 047644          219 ISSATLKTFVLEVMYCSHSSAPNQHTVTI--VAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQL  296 (314)
Q Consensus       219 i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~--~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~l  296 (314)
                      -..++|+.|+++  ++ ......+..+..  ..|+|++|++++.....+.-.-.++|+.+++..+...+       + ..
T Consensus       221 ~~l~~L~~L~Ls--~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~-------~-~~  289 (310)
T 4glp_A          221 AAGVQPHSLDLS--HN-SLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR-------A-PQ  289 (310)
T ss_dssp             HHTCCCSSEECT--TS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS-------C-CC
T ss_pred             hcCCCCCEEECC--CC-CCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC-------C-ch
Confidence            134788888886  22 222221111111  23789999988876543222223788888887653321       1 12


Q ss_pred             hhcCCCceEEEeecCCCC
Q 047644          297 LAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       297 l~~~~~l~~L~l~~~~l~  314 (314)
                      +..+++++.|.|++|.|.
T Consensus       290 ~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          290 PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             TTSCCCCSCEECSSTTTS
T ss_pred             hhhCCCccEEECcCCCCC
Confidence            578899999999999873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.44  E-value=2.9e-09  Score=96.16  Aligned_cols=183  Identities=14%  Similarity=0.032  Sum_probs=108.9

Q ss_pred             CCceEEEEEecCCC--ccccCCc-------ccccCCeeEEEEcceeecc-----cCCCCcCCCCcceEEeeeEEcCCC--
Q 047644          124 RNVREIEIDLRDHE--RIPLPAS-------IYRSITLEVLRLRSYFALT-----LPPDGVCFPRLKTFHLMLQQPTNH--  187 (314)
Q Consensus       124 ~~l~~L~l~~~~~~--~~~l~~~-------~~~c~~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~--  187 (314)
                      +++++|+|+.+...  ...+|..       +..+++|++|+|+++.+.+     .+.....+++|++|+|.++.+++.  
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  139 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  139 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence            47888888765322  1122332       2567888999888875543     221335678899998888887432  


Q ss_pred             -cHHHHhcCC---------ccccceeeeeeeccCCCCCcEE-----EecCCcceEEEEeeeeCCCCCCCcce----EEEE
Q 047644          188 -LPHNLFSRC---------PCLQHLSLTVYFTAANPASNLI-----ISSATLKTFVLEVMYCSHSSAPNQHT----VTIV  248 (314)
Q Consensus       188 -~l~~ll~~c---------p~Le~L~L~~c~~~~~~~~~~~-----i~~~~Lk~L~i~~~~c~~~~~~~~~~----l~~~  248 (314)
                       .+...+..+         |.|++|.+.+|.. .+. ....     -..++|+.|.++  +|.. ...+...    ....
T Consensus       140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l-~~~-~~~~l~~~l~~~~~L~~L~L~--~n~l-~~~g~~~l~~~~l~~  214 (386)
T 2ca6_A          140 AKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENG-SMKEWAKTFQSHRLLHTVKMV--QNGI-RPEGIEHLLLEGLAY  214 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC-TGG-GHHHHHHHHHHCTTCCEEECC--SSCC-CHHHHHHHHHTTGGG
T ss_pred             HHHHHHHHHHhhhhhcccCCCCcEEECCCCCC-CcH-HHHHHHHHHHhCCCcCEEECc--CCCC-CHhHHHHHHHHHhhc
Confidence             234444444         8889998888864 311 1111     145688888886  3422 1111000    1125


Q ss_pred             cCCccEEEeeccccc-------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhc--CCCceEEEeecCCC
Q 047644          249 APNLEFLDITDDLAV-------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAG--MTKTKCLTLSAGVL  313 (314)
Q Consensus       249 ~p~L~~L~l~~~~~~-------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~--~~~l~~L~l~~~~l  313 (314)
                      .++|++|+++++...       ...+..++.|+.+++..+......  ...+...+..  +++++.|.|+.|.+
T Consensus       215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~~~L~~L~L~~n~i  286 (386)
T 2ca6_A          215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG--AAAVVDAFSKLENIGLQTLRLQYNEI  286 (386)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH--HHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhh--HHHHHHHHhhccCCCeEEEECcCCcC
Confidence            688999999887652       123567888998888655221000  0113345543  89999999998876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.44  E-value=1.8e-08  Score=87.81  Aligned_cols=174  Identities=14%  Similarity=0.090  Sum_probs=103.5

Q ss_pred             CCceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeeccc---CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccc
Q 047644          124 RNVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALTL---PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCL  199 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  199 (314)
                      .++++|++..+...  .++.. +..+++|++|.|+++.....   +.....+++|+.|+|.+..+..  +..-+..++.|
T Consensus        28 ~~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            46778877766432  45544 34567888888877643321   1133457888888887776532  22225677888


Q ss_pred             cceeeeeeeccCCCCCc--EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc----ceeecCCCCc
Q 047644          200 QHLSLTVYFTAANPASN--LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV----SYAVHQLPSL  273 (314)
Q Consensus       200 e~L~L~~c~~~~~~~~~--~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~----~~~~~~~p~L  273 (314)
                      ++|++.++.. .+. ..  ..-..++|+.|+++  ++.. ... .....-..++|++|++++....    ...+..++.|
T Consensus       104 ~~L~l~~n~l-~~~-~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A          104 EHLDFQHSNL-KQM-SEFSVFLSLRNLIYLDIS--HTHT-RVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             CEEECTTSEE-ESS-TTTTTTTTCTTCCEEECT--TSCC-EEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred             CEEECCCCcc-ccc-ccchhhhhccCCCEEECC--CCcC-Ccc-chhhcccCcCCCEEECCCCccccccchhHHhhCcCC
Confidence            8888887755 322 11  11234678888875  2321 100 0011113578888888876543    2346678888


Q ss_pred             eeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          274 HKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       274 ~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      +.+++..+...      ......+.++++++.|.++.|.+
T Consensus       178 ~~L~Ls~n~l~------~~~~~~~~~l~~L~~L~L~~N~l  211 (306)
T 2z66_A          178 TFLDLSQCQLE------QLSPTAFNSLSSLQVLNMSHNNF  211 (306)
T ss_dssp             CEEECTTSCCC------EECTTTTTTCTTCCEEECTTSCC
T ss_pred             CEEECCCCCcC------CcCHHHhcCCCCCCEEECCCCcc
Confidence            88888654221      11223467889999999998876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.42  E-value=3.4e-07  Score=84.54  Aligned_cols=161  Identities=14%  Similarity=0.029  Sum_probs=93.7

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+....  ++  +..+++|++|.++++...+.  ....+++|+.|+|.+..++.-.    +..++.|++|.
T Consensus        64 ~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~--~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL--DVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC--CCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee--ecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEE
Confidence            456666666554322  12  44566677777766654444  2456667777777666663321    55667777777


Q ss_pred             eeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEEeEEe
Q 047644          204 LTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVMF  282 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~~  282 (314)
                      +.++.. .++    .+ ..++|+.|+++  +|.......    ....++|++|++++.....+.+..++.|+.+++..+.
T Consensus       134 l~~N~l-~~l----~l~~l~~L~~L~l~--~n~~~~~~~----~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          134 CARNTL-TEI----DVSHNTQLTELDCH--LNKKITKLD----VTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             CTTSCC-SCC----CCTTCTTCCEEECT--TCSCCCCCC----CTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSC
T ss_pred             CCCCcc-cee----ccccCCcCCEEECC--CCCcccccc----cccCCcCCEEECCCCccceeccccCCCCCEEECcCCc
Confidence            776654 322    12 34567777665  332211111    1145778888887776554556777788887776542


Q ss_pred             ccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          283 SEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ...       +  -+..+++++.|.++.|.++
T Consensus       203 l~~-------~--~l~~l~~L~~L~Ls~N~l~  225 (457)
T 3bz5_A          203 ITK-------L--DLNQNIQLTFLDCSSNKLT  225 (457)
T ss_dssp             CSC-------C--CCTTCTTCSEEECCSSCCS
T ss_pred             CCe-------e--ccccCCCCCEEECcCCccc
Confidence            211       1  1667888999998888763

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.42  E-value=1.2e-07  Score=82.12  Aligned_cols=147  Identities=18%  Similarity=0.116  Sum_probs=108.1

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT  226 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~  226 (314)
                      .+++|+.|.++++...+.+ ....+++|+.|+|.+..+++-.  . +..++.|+.|.+.++.. .++ .. --..++|+.
T Consensus        44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~n~l-~~~-~~-l~~l~~L~~  116 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDENKV-KDL-SS-LKDLKKLKS  116 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCSSCC-CCG-GG-GTTCTTCCE
T ss_pred             hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCCCcC-CCC-hh-hccCCCCCE
Confidence            5689999999998776666 6778999999999999985432  2 78999999999999975 444 22 124578999


Q ss_pred             EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceE
Q 047644          227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKC  305 (314)
Q Consensus       227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~  305 (314)
                      |+++  ++....   ... ....++|++|++++..... ..+..+++|+.+++..+....       +.. +..+++++.
T Consensus       117 L~L~--~n~i~~---~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-------~~~-l~~l~~L~~  182 (291)
T 1h6t_A          117 LSLE--HNGISD---ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-------IVP-LAGLTKLQN  182 (291)
T ss_dssp             EECT--TSCCCC---CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-------CGG-GTTCTTCCE
T ss_pred             EECC--CCcCCC---Chh-hcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-------chh-hcCCCccCE
Confidence            9996  332221   111 2257999999999876542 346788999999997653211       112 889999999


Q ss_pred             EEeecCCCC
Q 047644          306 LTLSAGVLH  314 (314)
Q Consensus       306 L~l~~~~l~  314 (314)
                      |.++.|.|+
T Consensus       183 L~L~~N~i~  191 (291)
T 1h6t_A          183 LYLSKNHIS  191 (291)
T ss_dssp             EECCSSCCC
T ss_pred             EECCCCcCC
Confidence            999999764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.42  E-value=1.5e-08  Score=96.72  Aligned_cols=18  Identities=17%  Similarity=0.320  Sum_probs=12.3

Q ss_pred             HhhcCCCceEEEeecCCC
Q 047644          296 LLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       296 ll~~~~~l~~L~l~~~~l  313 (314)
                      .+.++++++.|.|+.|.+
T Consensus       492 ~~~~l~~L~~L~Ls~N~l  509 (606)
T 3vq2_A          492 VFDTLHRLQLLNMSHNNL  509 (606)
T ss_dssp             TTTTCTTCCEEECCSSCC
T ss_pred             hhcccccCCEEECCCCcC
Confidence            356677777777777655

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.41  E-value=8.3e-08  Score=88.96  Aligned_cols=178  Identities=13%  Similarity=0.031  Sum_probs=103.7

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|+|+.+... ...|..+..+++|++|.|+++.....|. ....+++|+.|+|.+..+... ....+..++.|++|
T Consensus        56 ~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L  133 (477)
T 2id5_A           56 PHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLYNLKSL  133 (477)
T ss_dssp             TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccccCCEE
Confidence            46788877665322 1224456667888888888776655553 245678888888877765221 12345678888888


Q ss_pred             eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeEEEe
Q 047644          203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYY  279 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~  279 (314)
                      ++.++.. ........-..++|+.|+++  ++.. ... .....-..++|+.|++.+....   ...+..+++|+.+++.
T Consensus       134 ~l~~n~l-~~~~~~~~~~l~~L~~L~l~--~n~l-~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~  208 (477)
T 2id5_A          134 EVGDNDL-VYISHRAFSGLNSLEQLTLE--KCNL-TSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS  208 (477)
T ss_dssp             EECCTTC-CEECTTSSTTCTTCCEEEEE--SCCC-SSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred             ECCCCcc-ceeChhhccCCCCCCEEECC--CCcC-ccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence            8887643 11100001134688888887  3322 111 1111225688888888876544   2346678888888887


Q ss_pred             EEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          280 VMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       280 ~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      .+....      .+........+++.|.|+.|.|+
T Consensus       209 ~~~~~~------~~~~~~~~~~~L~~L~l~~n~l~  237 (477)
T 2id5_A          209 HWPYLD------TMTPNCLYGLNLTSLSITHCNLT  237 (477)
T ss_dssp             CCTTCC------EECTTTTTTCCCSEEEEESSCCC
T ss_pred             CCcccc------ccCcccccCccccEEECcCCccc
Confidence            542111      11111223348999999988763

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.40  E-value=4.7e-08  Score=96.14  Aligned_cols=173  Identities=15%  Similarity=0.106  Sum_probs=114.7

Q ss_pred             CCceEEEEEecCCCccccCC--cccccCCeeEEEEcceeeccc-CC-CCcCCCCcceEEeeeEEcCCCcHH--HHhcCCc
Q 047644          124 RNVREIEIDLRDHERIPLPA--SIYRSITLEVLRLRSYFALTL-PP-DGVCFPRLKTFHLMLQQPTNHLPH--NLFSRCP  197 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~--~~~~c~~L~~L~L~~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~--~ll~~cp  197 (314)
                      .++++|+|+.+... ..+|.  .+..+++|++|+|+++..... |. ....+++|++|+|.++.++.....  ..+.+|+
T Consensus       100 ~~L~~L~Ls~n~l~-~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSLS-GPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEEE-EEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcCC-CcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCC
Confidence            47888888776422 23444  677889999999988855433 21 226789999999988887332222  2378999


Q ss_pred             cccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCce
Q 047644          198 CLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLH  274 (314)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~  274 (314)
                      .|++|++.+|.. .+. ... -..++|+.|+++  +|... .. ... .-..++|++|++++....   ...+.++++|+
T Consensus       179 ~L~~L~Ls~n~l-~~~-~~~-~~l~~L~~L~Ls--~n~l~-~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~  250 (768)
T 3rgz_A          179 ELKHLAISGNKI-SGD-VDV-SRCVNLEFLDVS--SNNFS-TG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELK  250 (768)
T ss_dssp             TCCEEECCSSEE-ESC-CBC-TTCTTCCEEECC--SSCCC-SC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCC
T ss_pred             CCCEEECCCCcc-ccc-CCc-ccCCcCCEEECc--CCcCC-CC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCC
Confidence            999999999876 332 111 355789999987  44332 11 122 336789999999987654   23567889999


Q ss_pred             eEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          275 KAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       275 ~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      .+++..+...+.   ...     ..+++++.|.++.|.+
T Consensus       251 ~L~Ls~n~l~~~---~~~-----~~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          251 LLNISSNQFVGP---IPP-----LPLKSLQYLSLAENKF  281 (768)
T ss_dssp             EEECCSSCCEES---CCC-----CCCTTCCEEECCSSEE
T ss_pred             EEECCCCcccCc---cCc-----cccCCCCEEECcCCcc
Confidence            998876533211   111     1788999999988754

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.40  E-value=5.5e-08  Score=77.37  Aligned_cols=85  Identities=8%  Similarity=0.047  Sum_probs=44.8

Q ss_pred             CCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEe-----cCCcceEEEEeeeeCCCCCCCcceEE
Q 047644          172 PRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIIS-----SATLKTFVLEVMYCSHSSAPNQHTVT  246 (314)
Q Consensus       172 ~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~-----~~~Lk~L~i~~~~c~~~~~~~~~~l~  246 (314)
                      ..|+.|+|++|.+++.++..+ ++||.|++|+|++|...+|. ....+.     +++|++|+++  +|...++.+...+.
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls--~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEII--SCGNVTDKGIIALH  136 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEE--SCTTCCHHHHHHGG
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcC--CCCcCCHHHHHHHh
Confidence            456666666666655555554 46666666666666432322 111121     2356666665  56555554444433


Q ss_pred             EEcCCccEEEeeccc
Q 047644          247 IVAPNLEFLDITDDL  261 (314)
Q Consensus       247 ~~~p~L~~L~l~~~~  261 (314)
                       .+|+|++|+++++.
T Consensus       137 -~~~~L~~L~L~~c~  150 (176)
T 3e4g_A          137 -HFRNLKYLFLSDLP  150 (176)
T ss_dssp             -GCTTCCEEEEESCT
T ss_pred             -cCCCCCEEECCCCC
Confidence             45666666666654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.39  E-value=8.7e-08  Score=82.21  Aligned_cols=176  Identities=9%  Similarity=0.015  Sum_probs=81.2

Q ss_pred             CceEEEEEecCCCccccC-CcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          125 NVREIEIDLRDHERIPLP-ASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      ++++|+++.+...  .++ ..+..+++|++|.|+++.....+ .....+++|+.|.|.+..+..-. ...+..++.|++|
T Consensus        53 ~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L  129 (276)
T 2z62_A           53 ELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE-NFPIGHLKTLKEL  129 (276)
T ss_dssp             TCSEEECTTCCCC--EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEE
T ss_pred             CCcEEECCCCcCC--ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccC-chhcccCCCCCEE
Confidence            5666666544321  222 23344566666666665443332 23445666666666655542210 1114556666666


Q ss_pred             eeeeeeccCCCC-CcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCcc----EEEeecccccce--eecCCCCcee
Q 047644          203 SLTVYFTAANPA-SNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLE----FLDITDDLAVSY--AVHQLPSLHK  275 (314)
Q Consensus       203 ~L~~c~~~~~~~-~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~----~L~l~~~~~~~~--~~~~~p~L~~  275 (314)
                      ++.++.. .... ...--..++|+.|+++  ++.. ...... ..-..++|+    +|++++.....+  .....++|++
T Consensus       130 ~l~~n~l-~~~~l~~~~~~l~~L~~L~Ls--~N~l-~~~~~~-~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~  204 (276)
T 2z62_A          130 NVAHNLI-QSFKLPEYFSNLTNLEHLDLS--SNKI-QSIYCT-DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE  204 (276)
T ss_dssp             ECCSSCC-CCCCCCGGGGGCTTCCEEECC--SSCC-CEECGG-GGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred             ECcCCcc-ceecCchhhccCCCCCEEECC--CCCC-CcCCHH-HhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence            6666543 2210 0000123566666664  2211 100000 000122333    455554433211  1112336666


Q ss_pred             EEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          276 AVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       276 l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      +++..+..      .......+.++++++.|.|++|.+.
T Consensus       205 L~L~~n~l------~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          205 LALDTNQL------KSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             EECCSSCC------SCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             EECCCCce------eecCHhHhcccccccEEEccCCccc
Confidence            66654322      1122345678999999999998763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.39  E-value=5e-08  Score=77.29  Aligned_cols=103  Identities=21%  Similarity=0.180  Sum_probs=69.3

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+......+|..+..+++|+.|.++++...+. .....+++|+.|+|.+..+... +..++..+|.|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEe
Confidence            46888888777544335666667788888888888865554 3666788888888888887443 556666788888888


Q ss_pred             eeeeeccCCCCCc--EEEecCCcceEEEE
Q 047644          204 LTVYFTAANPASN--LIISSATLKTFVLE  230 (314)
Q Consensus       204 L~~c~~~~~~~~~--~~i~~~~Lk~L~i~  230 (314)
                      +.+|.. .++ ..  .--..++|+.|+++
T Consensus       102 Ls~N~l-~~~-~~~~~l~~l~~L~~L~l~  128 (168)
T 2ell_A          102 LSGNKL-KDI-STLEPLKKLECLKSLDLF  128 (168)
T ss_dssp             CBSSSC-CSS-GGGGGGSSCSCCCEEECC
T ss_pred             ccCCcc-Ccc-hhHHHHhcCCCCCEEEee
Confidence            888865 433 11  11123455555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.39  E-value=5.1e-07  Score=81.38  Aligned_cols=58  Identities=14%  Similarity=0.083  Sum_probs=35.6

Q ss_pred             CCccEEEeeccccc-ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          250 PNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       250 p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ++|++|++++.... ...+..++.|+++++..+..      .......+.++++++.|.++.|.+
T Consensus       226 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~l  284 (390)
T 3o6n_A          226 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL------EKIMYHPFVKMQRLERLYISNNRL  284 (390)
T ss_dssp             SSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC------CEEESGGGTTCSSCCEEECCSSCC
T ss_pred             ccccEEECCCCCCcccHHHcCCCCccEEECCCCcC------CCcChhHccccccCCEEECCCCcC
Confidence            56666666665433 22356677777777765422      111234567788888888888765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.38  E-value=1e-07  Score=75.45  Aligned_cols=58  Identities=16%  Similarity=0.095  Sum_probs=39.6

Q ss_pred             CCeeEEEEcceeec--ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          149 ITLEVLRLRSYFAL--TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       149 ~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      ++|+.|.++++...  ..|.....+++|+.|+|.++.++..   ..+..++.|+.|++++|..
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l   83 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRI   83 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcC
Confidence            67788888777655  4553446677788888877776442   4456777777777777754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.36  E-value=5.7e-07  Score=81.09  Aligned_cols=60  Identities=15%  Similarity=-0.001  Sum_probs=43.0

Q ss_pred             EcCCccEEEeecccccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          248 VAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       248 ~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ..|+|++|++++.....   ..+..++.|+++++..+...       .+......+++++.|.++.|.++
T Consensus       246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~~~~~~l~~L~~L~L~~n~l~  308 (390)
T 3o6n_A          246 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-------ALNLYGQPIPTLKVLDLSHNHLL  308 (390)
T ss_dssp             GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-------EEECSSSCCTTCCEEECCSSCCC
T ss_pred             CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCc-------ccCcccCCCCCCCEEECCCCcce
Confidence            56899999999876542   34677899999998764221       12223467899999999998763

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.36  E-value=2.3e-07  Score=87.46  Aligned_cols=178  Identities=13%  Similarity=0.124  Sum_probs=103.0

Q ss_pred             CCceEEEEEecCCCccccCCccc-ccCCeeEEEEcceeeccc----CCCCcCCCCcceEEeeeEEcCCCc-HHHHhcCCc
Q 047644          124 RNVREIEIDLRDHERIPLPASIY-RSITLEVLRLRSYFALTL----PPDGVCFPRLKTFHLMLQQPTNHL-PHNLFSRCP  197 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~-~c~~L~~L~L~~~~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~-l~~ll~~cp  197 (314)
                      ..++++++..+..  ..+|..++ .+++|+.|+|+++...+.    +.....+++|+.|+|.+..++.-. ....+..++
T Consensus       310 ~~L~~L~l~~n~l--~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~  387 (549)
T 2z81_A          310 EKVKRITVENSKV--FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK  387 (549)
T ss_dssp             TTCCEEEEESSCC--CCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred             ccceEEEeccCcc--ccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence            4677777776643  25565554 478999999988755431    113567888999999888874422 235678889


Q ss_pred             cccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCC-----cc----------eEEEEcCCccEEEeecccc
Q 047644          198 CLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPN-----QH----------TVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       198 ~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~-----~~----------~l~~~~p~L~~L~l~~~~~  262 (314)
                      .|++|++++|.. ..+ ....-..++|+.|+++  ++......+     ..          .+.-..|+|++|++++...
T Consensus       388 ~L~~L~Ls~N~l-~~l-p~~~~~~~~L~~L~Ls--~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l  463 (549)
T 2z81_A          388 NLTSLDISRNTF-HPM-PDSCQWPEKMRFLNLS--STGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKL  463 (549)
T ss_dssp             TCCEEECTTCCC-CCC-CSCCCCCTTCCEEECT--TSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             CCCEEECCCCCC-ccC-ChhhcccccccEEECC--CCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCcc
Confidence            999999988855 333 1111123456666554  222110000     00          0112456666666666543


Q ss_pred             cce-eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          263 VSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       263 ~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..+ ....+++|+.+++..+..      .......+..+++++.|.+++|.+
T Consensus       464 ~~ip~~~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          464 KTLPDASLFPVLLVMKISRNQL------KSVPDGIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             SSCCCGGGCTTCCEEECCSSCC------CCCCTTGGGGCTTCCEEECCSSCB
T ss_pred             CcCCCcccCccCCEEecCCCcc------CCcCHHHHhcCcccCEEEecCCCc
Confidence            311 134466667666654322      122334567788888888888875

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.35  E-value=8.9e-08  Score=88.07  Aligned_cols=85  Identities=15%  Similarity=0.031  Sum_probs=59.9

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeeccc-C--CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccc
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTL-P--PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQ  200 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~-~--~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  200 (314)
                      .++++|+++.+... ...|..+..+++|++|+|+++...+. +  .....+++|++|+|.+..++...-..++..++.|+
T Consensus        79 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           79 SSLIILKLDYNQFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             TTCCEEECTTCTTC-EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             ccCCEEeCCCCccC-ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            57888888776532 22355666788999999988865431 2  12567889999999888875433344577889999


Q ss_pred             ceeeeeeec
Q 047644          201 HLSLTVYFT  209 (314)
Q Consensus       201 ~L~L~~c~~  209 (314)
                      +|++.++..
T Consensus       158 ~L~L~~n~l  166 (455)
T 3v47_A          158 VLDLTFNKV  166 (455)
T ss_dssp             EEECTTCCB
T ss_pred             EEeCCCCcc
Confidence            999988764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.35  E-value=1.8e-07  Score=87.12  Aligned_cols=165  Identities=16%  Similarity=0.086  Sum_probs=108.8

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      ++++|+|+.+.... ..|..+..+++|+.|+|+++...+.+ ....+++|+.|+|.+..++.      +..+|.|+.|++
T Consensus        35 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA  106 (487)
T ss_dssp             GCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEE-ECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred             CccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCc-ccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence            78999998775332 22345667899999999988665554 36788999999999887743      123489999999


Q ss_pred             eeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---ee-cCCCCceeEEEeE
Q 047644          205 TVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AV-HQLPSLHKAVYYV  280 (314)
Q Consensus       205 ~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~-~~~p~L~~l~l~~  280 (314)
                      .+|.. .+.   ..-..++|+.|+++  ++.. ... .....-..++|++|++++......   .+ ..++.|+.++++.
T Consensus       107 ~~N~l-~~~---~~~~l~~L~~L~L~--~N~l-~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~  178 (487)
T 3oja_A          107 ANNNI-SRV---SCSRGQGKKNIYLA--NNKI-TML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY  178 (487)
T ss_dssp             CSSCC-CCE---EECCCSSCEEEECC--SSCC-CSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTT
T ss_pred             cCCcC-CCC---CccccCCCCEEECC--CCCC-CCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCC
Confidence            99865 322   22244788888886  3322 211 111112478999999988765422   22 3678999998876


Q ss_pred             EeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      +....       + .-...+++++.|.|+.|.|
T Consensus       179 N~l~~-------~-~~~~~l~~L~~L~Ls~N~l  203 (487)
T 3oja_A          179 NFIYD-------V-KGQVVFAKLKTLDLSSNKL  203 (487)
T ss_dssp             SCCCE-------E-ECCCCCTTCCEEECCSSCC
T ss_pred             Ccccc-------c-cccccCCCCCEEECCCCCC
Confidence            53221       1 1122588999999999876

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.34  E-value=4.8e-08  Score=93.23  Aligned_cols=82  Identities=18%  Similarity=0.202  Sum_probs=34.5

Q ss_pred             CCceEEEEEecCCCccccC-CcccccCCeeEEEEcceeeccc---CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccc
Q 047644          124 RNVREIEIDLRDHERIPLP-ASIYRSITLEVLRLRSYFALTL---PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCL  199 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  199 (314)
                      .++++|++..+.... .++ ..+..+++|+.|.++++.....   +.....+++|++|+|.+..+... ....+..++.|
T Consensus       325 ~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L  402 (606)
T 3t6q_A          325 PSLTHLSIKGNTKRL-ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL-KTEAFKECPQL  402 (606)
T ss_dssp             TTCSEEECCSCSSCC-BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEE-CTTTTTTCTTC
T ss_pred             CcCCEEECCCCCccc-ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcC-CHHHhcCCccC
Confidence            356666665543221 122 2233455555555555433221   11334455555555554433110 11223344455


Q ss_pred             cceeeeee
Q 047644          200 QHLSLTVY  207 (314)
Q Consensus       200 e~L~L~~c  207 (314)
                      ++|++.++
T Consensus       403 ~~L~l~~n  410 (606)
T 3t6q_A          403 ELLDLAFT  410 (606)
T ss_dssp             SEEECTTC
T ss_pred             CeEECCCC
Confidence            55555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.33  E-value=1.6e-07  Score=86.38  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=43.4

Q ss_pred             CCceEEEEEecCCCccccC-CcccccCCeeEEEEcceeecccCCC--CcCCCCcceEEeeeEEc
Q 047644          124 RNVREIEIDLRDHERIPLP-ASIYRSITLEVLRLRSYFALTLPPD--GVCFPRLKTFHLMLQQP  184 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~  184 (314)
                      .++++|++..+........ ..+..+++|++|.|+++...+.++.  ...+++|+.|+|.+..+
T Consensus       103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A          103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             ccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            5789999987754321111 2255679999999999876655323  56889999999998877

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.31  E-value=1.2e-07  Score=91.88  Aligned_cols=32  Identities=13%  Similarity=0.065  Sum_probs=15.5

Q ss_pred             cCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644          249 APNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV  280 (314)
Q Consensus       249 ~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~  280 (314)
                      .++|++|++++.....+   .+.++++|+.+++..
T Consensus       535 l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~  569 (680)
T 1ziw_A          535 LSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL  569 (680)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence            35555555555433211   234555555555543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.31  E-value=2e-07  Score=82.27  Aligned_cols=173  Identities=11%  Similarity=0.042  Sum_probs=88.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|++..+... ...+..+..+++|++|.|+++.....|.  ..+++|++|+|.+..++.- ....+..++.|+.|+
T Consensus        78 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~--~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~  153 (332)
T 2ft3_A           78 QHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPP--NLPSSLVELRIHDNRIRKV-PKGVFSGLRNMNCIE  153 (332)
T ss_dssp             TTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCS--SCCTTCCEEECCSSCCCCC-CSGGGSSCSSCCEEE
T ss_pred             CCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCc--cccccCCEEECCCCccCcc-CHhHhCCCccCCEEE
Confidence            35666666554322 1123344455666666666654444431  1125666666666555321 122345566666666


Q ss_pred             eeeeecc------------------------CCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeec
Q 047644          204 LTVYFTA------------------------ANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITD  259 (314)
Q Consensus       204 L~~c~~~------------------------~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~  259 (314)
                      +.++..-                        .+++..   ..++|+.|+++  ++.. ..... ......++|++|++++
T Consensus       154 l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~--~n~i-~~~~~-~~l~~l~~L~~L~L~~  226 (332)
T 2ft3_A          154 MGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD---LPETLNELHLD--HNKI-QAIEL-EDLLRYSKLYRLGLGH  226 (332)
T ss_dssp             CCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS---SCSSCSCCBCC--SSCC-CCCCT-TSSTTCTTCSCCBCCS
T ss_pred             CCCCccccCCCCcccccCCccCEEECcCCCCCccCcc---ccCCCCEEECC--CCcC-CccCH-HHhcCCCCCCEEECCC
Confidence            6655330                        111000   01466666665  2211 11100 1112457788888877


Q ss_pred             ccccc---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          260 DLAVS---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       260 ~~~~~---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      .....   ..+..+++|+++++..+...       .+...+..+++++.|.++.|.|.
T Consensus       227 N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          227 NQIRMIENGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCCC-------BCCTTGGGCTTCCEEECCSSCCC
T ss_pred             CcCCcCChhHhhCCCCCCEEECCCCcCe-------ecChhhhcCccCCEEECCCCCCC
Confidence            64432   23567788888887654221       12223678888999999888763

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.30  E-value=7.5e-07  Score=85.03  Aligned_cols=171  Identities=16%  Similarity=0.113  Sum_probs=85.3

Q ss_pred             CceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          125 NVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      ++++|+|+.+...  .++. .+..+++|+.|.|+++.+...|+. ...+++|+.|+|.+..++.. ....+..++.|+.|
T Consensus       100 ~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  176 (597)
T 3oja_B          100 TIQKLYMGFNAIR--YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI-EDDTFQATTSLQNL  176 (597)
T ss_dssp             TCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC-CTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCC--CCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC-ChhhhhcCCcCcEE
Confidence            5566666554321  2222 234456666666666655444422 24566666666666655221 12234556666666


Q ss_pred             eeeeeeccCCCC-------CcEE---------EecCCcceEEEEeeeeCCCCCCCcceEE-EEcCCccEEEeeccccc-c
Q 047644          203 SLTVYFTAANPA-------SNLI---------ISSATLKTFVLEVMYCSHSSAPNQHTVT-IVAPNLEFLDITDDLAV-S  264 (314)
Q Consensus       203 ~L~~c~~~~~~~-------~~~~---------i~~~~Lk~L~i~~~~c~~~~~~~~~~l~-~~~p~L~~L~l~~~~~~-~  264 (314)
                      +|.++.. .+..       ..+.         -..++|+.|+++  ++..      ..+. ...++|++|++++.... .
T Consensus       177 ~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls--~n~l------~~~~~~~~~~L~~L~L~~n~l~~~  247 (597)
T 3oja_B          177 QLSSNRL-THVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDAS--HNSI------NVVRGPVNVELTILKLQHNNLTDT  247 (597)
T ss_dssp             ECTTSCC-SBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECC--SSCC------CEEECSCCSCCCEEECCSSCCCCC
T ss_pred             ECcCCCC-CCcChhhhhhhhhhhcccCccccccCCchhheeecc--CCcc------cccccccCCCCCEEECCCCCCCCC
Confidence            6666543 2110       0000         011234444443  1111      0000 11256777777665433 2


Q ss_pred             eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          265 YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       265 ~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..+..++.|+.+++..+..      .......+.++++++.|.|+.|.|
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~N~l  290 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNEL------EKIMYHPFVKMQRLERLYISNNRL  290 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCC------CEEESGGGTTCSSCCEEECTTSCC
T ss_pred             hhhccCCCCCEEECCCCcc------CCCCHHHhcCccCCCEEECCCCCC
Confidence            3356677888887765422      112334567888888888888765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.30  E-value=1.2e-07  Score=83.65  Aligned_cols=111  Identities=10%  Similarity=-0.052  Sum_probs=67.2

Q ss_pred             ccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc--eeecCCCCce
Q 047644          197 PCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS--YAVHQLPSLH  274 (314)
Q Consensus       197 p~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~--~~~~~~p~L~  274 (314)
                      +.|++|++.++.. .+.....--..++|+.|+++  ++.. ..... ...-..|+|++|++++.....  ..+..++.|+
T Consensus       193 ~~L~~L~l~~n~i-~~~~~~~l~~l~~L~~L~L~--~N~l-~~~~~-~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~  267 (332)
T 2ft3_A          193 ETLNELHLDHNKI-QAIELEDLLRYSKLYRLGLG--HNQI-RMIEN-GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ  267 (332)
T ss_dssp             SSCSCCBCCSSCC-CCCCTTSSTTCTTCSCCBCC--SSCC-CCCCT-TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred             CCCCEEECCCCcC-CccCHHHhcCCCCCCEEECC--CCcC-CcCCh-hHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence            6888999988865 33300111145789999997  3322 22111 112357899999999876542  2367889999


Q ss_pred             eEEEeEEeccCCCCCCCChHH--HhhcCCCceEEEeecCCCC
Q 047644          275 KAVYYVMFSEWPPIDRRPPVQ--LLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       275 ~l~l~~~~~~~~~~~~~~~~~--ll~~~~~l~~L~l~~~~l~  314 (314)
                      .+++.........  ...+..  +....++++.|.+.+|.++
T Consensus       268 ~L~l~~N~l~~~~--~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          268 VVYLHTNNITKVG--VNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             EEECCSSCCCBCC--TTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             EEECCCCCCCccC--hhHccccccccccccccceEeecCccc
Confidence            9999865332111  111111  1123678999999999763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.30  E-value=7.6e-08  Score=83.48  Aligned_cols=174  Identities=14%  Similarity=0.032  Sum_probs=98.8

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+.... ..+..+..+++|+.|.|+++.....+ ....+++|+.|+|.+..++.  +...+..+|.|+.|+
T Consensus        31 ~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCccc-CCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence            467777776554321 12234555678888888777655554 33677888888887777642  333456778888888


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV  280 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~  280 (314)
                      +.++.. ..+.....-..++|+.|.++  ++ ..... +....-..++|+.|++++.....+   .+..+++|+.+++..
T Consensus       107 l~~N~l-~~l~~~~~~~l~~L~~L~L~--~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~  181 (290)
T 1p9a_G          107 VSFNRL-TSLPLGALRGLGELQELYLK--GN-ELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE  181 (290)
T ss_dssp             CCSSCC-CCCCSSTTTTCTTCCEEECT--TS-CCCCC-CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCcC-cccCHHHHcCCCCCCEEECC--CC-CCCcc-ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC
Confidence            887754 32200101133677777775  22 21111 111112457788888877654422   245677888877765


Q ss_pred             EeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ....       .+..-+...++++.|.|++|++
T Consensus       182 N~l~-------~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          182 NSLY-------TIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             SCCC-------CCCTTTTTTCCCSEEECCSCCB
T ss_pred             CcCC-------ccChhhcccccCCeEEeCCCCc
Confidence            4221       1122233456788888888765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.29  E-value=2.1e-07  Score=88.92  Aligned_cols=166  Identities=16%  Similarity=0.091  Sum_probs=121.3

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      ..+++|++..+...  .++ .+..+++|+.|.|+++.+.+.+ ....+++|+.|.|.++.+.+-  . -+..++.|+.|+
T Consensus        43 ~~L~~L~l~~n~i~--~l~-~l~~l~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~  115 (605)
T 1m9s_A           43 NSIDQIIANNSDIK--SVQ-GIQYLPNVTKLFLNGNKLTDIK-PLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLS  115 (605)
T ss_dssp             TTCCCCBCTTCCCC--CCT-TGGGCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC--CCh-HHccCCCCCEEEeeCCCCCCCh-hhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEE
Confidence            57888888766533  233 4677899999999999777766 477899999999999988442  2 467999999999


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-ceeecCCCCceeEEEeEEe
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMF  282 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~  282 (314)
                      |.+|.. .++ ..+ ...++|+.|+++  .|....   . ...-.+++|+.|+++++... ...+..++.|+.++|..+.
T Consensus       116 Ls~N~l-~~l-~~l-~~l~~L~~L~Ls--~N~l~~---l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          116 LEHNGI-SDI-NGL-VHLPQLESLYLG--NNKITD---I-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CTTSCC-CCC-GGG-GGCTTCSEEECC--SSCCCC---C-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             ecCCCC-CCC-ccc-cCCCccCEEECC--CCccCC---c-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCC
Confidence            999976 444 221 245899999997  343221   1 11226799999999987654 2237889999999997653


Q ss_pred             ccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          283 SEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..       .+ .-+..+++|+.|.|+.|.+
T Consensus       187 i~-------~l-~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          187 IS-------DL-RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CC-------BC-GGGTTCTTCSEEECCSEEE
T ss_pred             CC-------CC-hHHccCCCCCEEEccCCcC
Confidence            22       12 3478899999999998764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.29  E-value=7.5e-07  Score=88.52  Aligned_cols=83  Identities=17%  Similarity=0.107  Sum_probs=47.0

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc-cCCC--CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT-LPPD--GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~-~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      +++.|+|+.+... ...|..+..+++|++|.|+++...+ .+..  ...+++|++|+|.+..++.......+..++.|++
T Consensus        74 ~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~  152 (844)
T 3j0a_A           74 NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS  152 (844)
T ss_dssp             TCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred             CCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence            5666666554322 1234455566677777776664443 1211  4466677777777666644333344566677777


Q ss_pred             eeeeeee
Q 047644          202 LSLTVYF  208 (314)
Q Consensus       202 L~L~~c~  208 (314)
                      |+|.++.
T Consensus       153 L~Ls~N~  159 (844)
T 3j0a_A          153 IDFSSNQ  159 (844)
T ss_dssp             EEEESSC
T ss_pred             EECCCCc
Confidence            7776654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.29  E-value=4.7e-07  Score=89.79  Aligned_cols=181  Identities=13%  Similarity=0.060  Sum_probs=95.7

Q ss_pred             CceEEEEEecCCCccccCCcccccCC-eeEEEEcceeecccCCCCc-------------------------------CCC
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSIT-LEVLRLRSYFALTLPPDGV-------------------------------CFP  172 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~-L~~L~L~~~~~~~~~~~~~-------------------------------~~~  172 (314)
                      ++++|+++.+...  .+|..+..+++ |+.|.|+++.....|....                               .++
T Consensus       596 ~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~  673 (876)
T 4ecn_A          596 KLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI  673 (876)
T ss_dssp             EESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred             cceEEECcCCccc--cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence            5666666555433  45555555555 6666666654333331111                               223


Q ss_pred             CcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEE-------ecCCcceEEEEeeeeCCCCCCCcceE
Q 047644          173 RLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLII-------SSATLKTFVLEVMYCSHSSAPNQHTV  245 (314)
Q Consensus       173 ~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i-------~~~~Lk~L~i~~~~c~~~~~~~~~~l  245 (314)
                      +|+.|+|.++.++. --..++..++.|+.|+|+++.. ..++....-       .+++|+.|+++  +|.. . .-+..+
T Consensus       674 ~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N~L-~~ip~~~~~~~~~~l~nl~~L~~L~Ls--~N~L-~-~lp~~l  747 (876)
T 4ecn_A          674 NASTVTLSYNEIQK-FPTELFATGSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYLLTTIDLR--FNKL-T-SLSDDF  747 (876)
T ss_dssp             CEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSCCC-SCCCTTSSSCTTSCCTTGGGCCEEECC--SSCC-C-CCCGGG
T ss_pred             CcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCCcC-CccChHHhccccccccccCCccEEECC--CCCC-c-cchHHh
Confidence            56666666665542 1234555778888888887754 322111100       11278888886  3322 2 111111


Q ss_pred             E-EEcCCccEEEeecccccc--eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          246 T-IVAPNLEFLDITDDLAVS--YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       246 ~-~~~p~L~~L~l~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      . -..|+|+.|++++.....  ..+.++++|+.+++..+.......-...+...+.++++++.|.|+.|.|
T Consensus       748 ~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L  818 (876)
T 4ecn_A          748 RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI  818 (876)
T ss_dssp             STTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             hhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence            1 156888888888765442  3356788888888865321000000122334466788888888887765

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.29  E-value=2.1e-07  Score=81.66  Aligned_cols=181  Identities=15%  Similarity=0.061  Sum_probs=118.0

Q ss_pred             CcchHHHHHHHHHh--CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCC
Q 047644          110 SLGMFDYWVSSAIS--RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNH  187 (314)
Q Consensus       110 ~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~  187 (314)
                      ....+...+.....  .++++|+++.+.... ..+..+..+++|+.|.|+++...+.+ ....+++|+.|+|.+..++. 
T Consensus        18 s~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~Ls~n~l~~-   94 (317)
T 3o53_A           18 TDSSLKQALASLRQSAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDLNNNYVQE-   94 (317)
T ss_dssp             CTTTHHHHHHHHHTTGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEECCSSEEEE-
T ss_pred             cccchhhhHHHHhccCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEECcCCcccc-
Confidence            33455555555443  479999998775332 12245567899999999998665554 36789999999999888743 


Q ss_pred             cHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccccee-
Q 047644          188 LPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYA-  266 (314)
Q Consensus       188 ~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~-  266 (314)
                           +..+|.|++|++.++.. .+   ...-..++|+.|+++  ++.. ... ........++|++|++++....... 
T Consensus        95 -----l~~~~~L~~L~l~~n~l-~~---~~~~~~~~L~~L~l~--~N~l-~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (317)
T 3o53_A           95 -----LLVGPSIETLHAANNNI-SR---VSCSRGQGKKNIYLA--NNKI-TML-RDLDEGCRSRVQYLDLKLNEIDTVNF  161 (317)
T ss_dssp             -----EEECTTCCEEECCSSCC-SE---EEECCCSSCEEEECC--SSCC-CSG-GGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred             -----ccCCCCcCEEECCCCcc-CC---cCccccCCCCEEECC--CCCC-CCc-cchhhhccCCCCEEECCCCCCCcccH
Confidence                 12459999999999865 22   122245789999986  3322 111 1111225689999999987654221 


Q ss_pred             ---ecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          267 ---VHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       267 ---~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                         ...+++|+.+++..+....       + .-...+++++.|.++.|.|.
T Consensus       162 ~~~~~~l~~L~~L~L~~N~l~~-------~-~~~~~l~~L~~L~Ls~N~l~  204 (317)
T 3o53_A          162 AELAASSDTLEHLNLQYNFIYD-------V-KGQVVFAKLKTLDLSSNKLA  204 (317)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCE-------E-ECCCCCTTCCEEECCSSCCC
T ss_pred             HHHhhccCcCCEEECCCCcCcc-------c-ccccccccCCEEECCCCcCC
Confidence               2467899999987653211       1 11224899999999998763

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.28  E-value=5.4e-07  Score=86.69  Aligned_cols=138  Identities=12%  Similarity=0.028  Sum_probs=73.4

Q ss_pred             CCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEec-------CCcceEEEEeeeeCCCCCCCc
Q 047644          170 CFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISS-------ATLKTFVLEVMYCSHSSAPNQ  242 (314)
Q Consensus       170 ~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~-------~~Lk~L~i~~~~c~~~~~~~~  242 (314)
                      .+++|+.|+|.+..++. --..++..++.|++|+|.++.. ..++....-..       ++|+.|+++  ++.. . .-+
T Consensus       431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L~Ls--~N~l-~-~lp  504 (636)
T 4eco_A          431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSIDLR--FNKL-T-KLS  504 (636)
T ss_dssp             CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEEECC--SSCC-C-BCC
T ss_pred             cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEEECc--CCcC-C-ccC
Confidence            34567777777666642 1234556678888888887754 32211111111       177888876  3322 1 111


Q ss_pred             ceEE-EEcCCccEEEeecccccc--eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          243 HTVT-IVAPNLEFLDITDDLAVS--YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       243 ~~l~-~~~p~L~~L~l~~~~~~~--~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..+. ...|+|++|++++.....  ..+.++++|+.+++..+.......-...+...+..+++++.|.|+.|.|
T Consensus       505 ~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l  578 (636)
T 4eco_A          505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI  578 (636)
T ss_dssp             GGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred             hhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC
Confidence            1111 156788888888765432  2456678888888743220000000122333456677788888777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.25  E-value=9e-07  Score=84.49  Aligned_cols=170  Identities=15%  Similarity=0.083  Sum_probs=111.9

Q ss_pred             CCceEEEEEecCCCccccCCcc-cccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPLPASI-YRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~-~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      .++++|+|+.+...  .+|..+ ..+++|+.|.|+++.+...++ ....+++|+.|+|.+..++...    +..+|.|+.
T Consensus       123 ~~L~~L~L~~n~l~--~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~  196 (597)
T 3oja_B          123 PLLTVLVLERNDLS--SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFH  196 (597)
T ss_dssp             TTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSE
T ss_pred             CCCCEEEeeCCCCC--CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhh
Confidence            47899998877533  556554 567899999999886665543 4567899999999888774432    344566666


Q ss_pred             eeeeeeeccCC------CCCcEEE-----------ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc
Q 047644          202 LSLTVYFTAAN------PASNLII-----------SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS  264 (314)
Q Consensus       202 L~L~~c~~~~~------~~~~~~i-----------~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~  264 (314)
                      |++.++.. .+      + ..+.+           ..++|+.|+++  ++.. ..  . ......|+|++|++++.....
T Consensus       197 L~l~~n~l-~~l~~~~~L-~~L~ls~n~l~~~~~~~~~~L~~L~L~--~n~l-~~--~-~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          197 ANVSYNLL-STLAIPIAV-EELDASHNSINVVRGPVNVELTILKLQ--HNNL-TD--T-AWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             EECCSSCC-SEEECCTTC-SEEECCSSCCCEEECSCCSCCCEEECC--SSCC-CC--C-GGGGGCTTCSEEECCSSCCCE
T ss_pred             hhcccCcc-ccccCCchh-heeeccCCcccccccccCCCCCEEECC--CCCC-CC--C-hhhccCCCCCEEECCCCccCC
Confidence            66655432 11      1 11111           23579999997  3332 21  1 122367999999999986542


Q ss_pred             ---eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          265 ---YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       265 ---~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                         ..+..+++|+.+++..+...       .+......+++++.|.|+.|.|.
T Consensus       269 ~~~~~~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~Ls~N~l~  314 (597)
T 3oja_B          269 IMYHPFVKMQRLERLYISNNRLV-------ALNLYGQPIPTLKVLDLSHNHLL  314 (597)
T ss_dssp             EESGGGTTCSSCCEEECTTSCCC-------EEECSSSCCTTCCEEECCSSCCC
T ss_pred             CCHHHhcCccCCCEEECCCCCCC-------CCCcccccCCCCcEEECCCCCCC
Confidence               35678999999999764221       12233467899999999999763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.25  E-value=1.7e-07  Score=81.30  Aligned_cols=171  Identities=18%  Similarity=0.134  Sum_probs=112.3

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++++....  -..+|..+.  ++++.|.|+++.....+ .....+++|+.|+|.+..++.-.  . ...+|.|+.|+
T Consensus        11 ~l~~l~~~~~~--l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~   83 (290)
T 1p9a_G           11 SHLEVNCDKRN--LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTLD   83 (290)
T ss_dssp             TCCEEECTTSC--CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEEE
T ss_pred             CccEEECCCCC--CCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEEE
Confidence            45666665433  234555443  68999999998665443 25668999999999988773311  1 16889999999


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYV  280 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~  280 (314)
                      ++++.. ..+ ....-..++|+.|+++  ++ ..... .....-..++|++|.+++.....   ..+..+++|+.+++..
T Consensus        84 Ls~N~l-~~l-~~~~~~l~~L~~L~l~--~N-~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  157 (290)
T 1p9a_G           84 LSHNQL-QSL-PLLGQTLPALTVLDVS--FN-RLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (290)
T ss_dssp             CCSSCC-SSC-CCCTTTCTTCCEEECC--SS-CCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCCCcC-CcC-chhhccCCCCCEEECC--CC-cCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence            999865 433 2211245789999986  23 22211 11112246899999999876542   2356788999999876


Q ss_pred             EeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ....      ......+.++++++.|.|+.|.|+
T Consensus       158 N~l~------~l~~~~~~~l~~L~~L~L~~N~l~  185 (290)
T 1p9a_G          158 NNLT------ELPAGLLNGLENLDTLLLQENSLY  185 (290)
T ss_dssp             SCCS------CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CcCC------ccCHHHhcCcCCCCEEECCCCcCC
Confidence            4322      122345678999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.25  E-value=5.1e-07  Score=75.70  Aligned_cols=168  Identities=13%  Similarity=0.073  Sum_probs=86.0

Q ss_pred             CCceEEEEEecC-CCccccCC-cccccCCeeEEEEcc-eeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccc
Q 047644          124 RNVREIEIDLRD-HERIPLPA-SIYRSITLEVLRLRS-YFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCL  199 (314)
Q Consensus       124 ~~l~~L~l~~~~-~~~~~l~~-~~~~c~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~L  199 (314)
                      .++++|+++.+. ..  .++. .+..+++|++|.+++ ......++ ....+++|+.|+|.+..++.  +.. +..++.|
T Consensus        55 ~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L  129 (239)
T 2xwt_C           55 PNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM--FPD-LTKVYST  129 (239)
T ss_dssp             TTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS--CCC-CTTCCBC
T ss_pred             CCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc--ccc-ccccccc
Confidence            467777777653 21  2332 344567777777776 33333331 34467777777777777633  222 5667777


Q ss_pred             c---ceeeeee-eccCCCCCcEEEecCCcc-eEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccc-ccc---eeecCC
Q 047644          200 Q---HLSLTVY-FTAANPASNLIISSATLK-TFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDL-AVS---YAVHQL  270 (314)
Q Consensus       200 e---~L~L~~c-~~~~~~~~~~~i~~~~Lk-~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~-~~~---~~~~~~  270 (314)
                      +   .|++.++ .. ..+.....-..++|+ .|+++  ++.. ..  ........++|++|++++.. ...   ..+.++
T Consensus       130 ~~L~~L~l~~N~~l-~~i~~~~~~~l~~L~~~L~l~--~n~l-~~--i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          130 DIFFILEITDNPYM-TSIPVNAFQGLCNETLTLKLY--NNGF-TS--VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             CSEEEEEEESCTTC-CEECTTTTTTTBSSEEEEECC--SCCC-CE--ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred             ccccEEECCCCcch-hhcCcccccchhcceeEEEcC--CCCC-cc--cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhcc
Confidence            7   7777766 22 111000001235666 66664  1211 10  00001122577777777763 321   234556


Q ss_pred             -CCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecC
Q 047644          271 -PSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAG  311 (314)
Q Consensus       271 -p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~  311 (314)
                       +.|+.+++.........         -..+++++.|.+..+
T Consensus       204 ~~~L~~L~l~~N~l~~l~---------~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          204 YSGPSLLDVSQTSVTALP---------SKGLEHLKELIARNT  236 (239)
T ss_dssp             SBCCSEEECTTCCCCCCC---------CTTCTTCSEEECTTC
T ss_pred             ccCCcEEECCCCccccCC---------hhHhccCceeeccCc
Confidence             77777777643221110         015677777776654

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.23  E-value=4e-07  Score=78.21  Aligned_cols=38  Identities=26%  Similarity=0.539  Sum_probs=35.1

Q ss_pred             CcccCCCChHHHHHHhcCCChhhhh-hhhcccccccccc
Q 047644           18 EDRISCLPDSILCQILSVPPTKDAV-ATSILSPRWKHAW   55 (314)
Q Consensus        18 ~d~~~~LPd~ll~~Ils~L~~~d~~-~~~~vskrWr~l~   55 (314)
                      ...+..||+|++..||++||.++++ +++.|||+|+.+.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~   86 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV   86 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHh
Confidence            4578899999999999999999999 9999999999873

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.22  E-value=5.1e-08  Score=75.60  Aligned_cols=84  Identities=20%  Similarity=0.185  Sum_probs=58.3

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+......+|..+..+++|+.|.++++...+.+ ....+++|+.|+|.+..++.. +...+..+|.|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCT-TCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCch-hhhcCCCCCEEECCCCcccch-HHHHhhhCCCCCEEE
Confidence            467777777665432356666667788888888887555442 566778888888888877443 566666788888888


Q ss_pred             eeeeec
Q 047644          204 LTVYFT  209 (314)
Q Consensus       204 L~~c~~  209 (314)
                      ++++..
T Consensus        95 ls~N~i  100 (149)
T 2je0_A           95 LSGNKI  100 (149)
T ss_dssp             CTTSCC
T ss_pred             CCCCcC
Confidence            887754

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.22  E-value=2.7e-07  Score=85.90  Aligned_cols=192  Identities=13%  Similarity=0.053  Sum_probs=124.7

Q ss_pred             CCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcc
Q 047644           96 SSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLK  175 (314)
Q Consensus        96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~  175 (314)
                      +.++.+.+....-....  ...+  ....+++.|+|+.+....  .+. +..+++|+.|+|+++.+.+.+    ..++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~--~~~~--~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l~----~~~~L~  102 (487)
T 3oja_A           34 WNVKELDLSGNPLSQIS--AADL--APFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNNYVQELL----VGPSIE  102 (487)
T ss_dssp             GGCCEEECCSSCCCCCC--GGGG--TTCTTCCEEECTTSCCEE--EEE-CTTCTTCCEEECCSSEEEEEE----ECTTCC
T ss_pred             CCccEEEeeCCcCCCCC--HHHH--hCCCCCCEEEeeCCCCCC--Ccc-cccCCCCCEEEecCCcCCCCC----CCCCcC
Confidence            35888888765432211  0111  112589999998775332  222 667899999999999766654    238999


Q ss_pred             eEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccE
Q 047644          176 TFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEF  254 (314)
Q Consensus       176 ~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~  254 (314)
                      .|+|.++.++...    ...+|.|+.|+|.+|.. .+. ....+ ..++|+.|+++  ++ ......+..+.-..++|++
T Consensus       103 ~L~L~~N~l~~~~----~~~l~~L~~L~L~~N~l-~~~-~~~~~~~l~~L~~L~Ls--~N-~l~~~~~~~l~~~l~~L~~  173 (487)
T 3oja_A          103 TLHAANNNISRVS----CSRGQGKKNIYLANNKI-TML-RDLDEGCRSRVQYLDLK--LN-EIDTVNFAELAASSDTLEH  173 (487)
T ss_dssp             EEECCSSCCCCEE----ECCCSSCEEEECCSSCC-CSG-GGBCGGGGSSEEEEECT--TS-CCCEEEGGGGGGGTTTCCE
T ss_pred             EEECcCCcCCCCC----ccccCCCCEEECCCCCC-CCC-CchhhcCCCCCCEEECC--CC-CCCCcChHHHhhhCCcccE
Confidence            9999999884422    13579999999999975 433 22222 35789999986  22 2221111112125699999


Q ss_pred             EEeecccccce-eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          255 LDITDDLAVSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       255 L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      |++++...... ....++.|+.++++.+...+       +..-+.++++++.|.|+.|.|.
T Consensus       174 L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~-------~~~~~~~l~~L~~L~Ls~N~l~  227 (487)
T 3oja_A          174 LNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAF-------MGPEFQSAAGVTWISLRNNKLV  227 (487)
T ss_dssp             EECTTSCCCEEECCCCCTTCCEEECCSSCCCE-------ECGGGGGGTTCSEEECTTSCCC
T ss_pred             EecCCCccccccccccCCCCCEEECCCCCCCC-------CCHhHcCCCCccEEEecCCcCc
Confidence            99999876522 24468999999997653221       1112678899999999998763

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.20  E-value=6.9e-09  Score=95.66  Aligned_cols=182  Identities=15%  Similarity=0.041  Sum_probs=92.8

Q ss_pred             CceEEEEEecCCCcc---ccCCcccccCCeeEEEEcceeeccc------CCCCcCCCCcceEEeeeEEcCCCc---HHHH
Q 047644          125 NVREIEIDLRDHERI---PLPASIYRSITLEVLRLRSYFALTL------PPDGVCFPRLKTFHLMLQQPTNHL---PHNL  192 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~---~l~~~~~~c~~L~~L~L~~~~~~~~------~~~~~~~~~L~~L~L~~~~~~~~~---l~~l  192 (314)
                      ++++|++..+.....   .++..+..+++|++|+++++...+.      +.....+++|++|+|.++.+++.+   +...
T Consensus       200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~  279 (461)
T 1z7x_W          200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV  279 (461)
T ss_dssp             CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence            566666555432211   1334444566777777766633221      001124667777777777665443   4444


Q ss_pred             hcCCccccceeeeeeeccCCCCCcEEE------ecCCcceEEEEeeeeCCCCCCCc---ceEEEEcCCccEEEeeccccc
Q 047644          193 FSRCPCLQHLSLTVYFTAANPASNLII------SSATLKTFVLEVMYCSHSSAPNQ---HTVTIVAPNLEFLDITDDLAV  263 (314)
Q Consensus       193 l~~cp~Le~L~L~~c~~~~~~~~~~~i------~~~~Lk~L~i~~~~c~~~~~~~~---~~l~~~~p~L~~L~l~~~~~~  263 (314)
                      +..||.|++|+++++.. .+. ....+      ..++|+.|+++  +|.. +..+.   ....-..++|++|++++....
T Consensus       280 l~~~~~L~~L~Ls~n~i-~~~-~~~~l~~~l~~~~~~L~~L~L~--~n~l-~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          280 LRAKESLKELSLAGNEL-GDE-GARLLCETLLEPGCQLESLWVK--SCSF-TAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHCTTCCEEECTTCCC-HHH-HHHHHHHHHTSTTCCCCEEECT--TSCC-BGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             HhhCCCcceEECCCCCC-chH-HHHHHHHHhccCCccceeeEcC--CCCC-chHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            55677777777776643 111 00011      12477777775  3321 11110   011113477888888776433


Q ss_pred             ce---eec-----CCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          264 SY---AVH-----QLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       264 ~~---~~~-----~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..   .+.     ..+.|+++++..+......  ...+...+..+++++.|.+++|.+
T Consensus       355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~l~~N~i  410 (461)
T 1z7x_W          355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSS--CSSLAATLLANHSLRELDLSNNCL  410 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH--HHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             cccHHHHHHHHcCCCCceEEEECCCCCCChhh--HHHHHHHHHhCCCccEEECCCCCC
Confidence            11   111     1567777777654211000  013455667788888888888865

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.19  E-value=3.9e-07  Score=79.90  Aligned_cols=206  Identities=12%  Similarity=0.047  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHccCCCCCeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcce
Q 047644           80 AAFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSY  159 (314)
Q Consensus        80 ~~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~  159 (314)
                      ..+..........  .+.++.+.+....-....  ...+.  ...++++|+++.+....  .+. +..+++|++|.|+++
T Consensus        20 ~~l~~~~~~~~~~--~~~L~~L~L~~n~l~~~~--~~~~~--~l~~L~~L~Ls~n~l~~--~~~-~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           20 SSLKQALASLRQS--AWNVKELDLSGNPLSQIS--AADLA--PFTKLELLNLSSNVLYE--TLD-LESLSTLRTLDLNNN   90 (317)
T ss_dssp             TTHHHHHHHHHTT--GGGCSEEECTTSCCCCCC--HHHHT--TCTTCCEEECTTSCCEE--EEE-ETTCTTCCEEECCSS
T ss_pred             cchhhhHHHHhcc--CCCCCEEECcCCccCcCC--HHHhh--CCCcCCEEECCCCcCCc--chh-hhhcCCCCEEECcCC
Confidence            4455555544432  234888887655422111  11121  12589999998775332  222 667899999999998


Q ss_pred             eecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCC
Q 047644          160 FALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSS  238 (314)
Q Consensus       160 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~  238 (314)
                      ...+.+    ..++|+.|+|.+..++...    ...++.|++|.+.++.. .+. ....+ ..++|+.|+++  ++ ...
T Consensus        91 ~l~~l~----~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l-~~~-~~~~~~~l~~L~~L~Ls--~N-~l~  157 (317)
T 3o53_A           91 YVQELL----VGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKI-TML-RDLDEGCRSRVQYLDLK--LN-EID  157 (317)
T ss_dssp             EEEEEE----ECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCC-CSG-GGBCTGGGSSEEEEECT--TS-CCC
T ss_pred             cccccc----CCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCC-CCc-cchhhhccCCCCEEECC--CC-CCC
Confidence            766553    3489999999988774322    23579999999999976 433 22222 35789999986  22 211


Q ss_pred             CCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          239 APNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       239 ~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ...+..+.-..++|++|++++...... ....+++|+++++..+...       .+..-+..+++++.|.++.|.|+
T Consensus       158 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~-------~l~~~~~~l~~L~~L~L~~N~l~  227 (317)
T 3o53_A          158 TVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLA-------FMGPEFQSAAGVTWISLRNNKLV  227 (317)
T ss_dssp             EEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCC-------EECGGGGGGTTCSEEECTTSCCC
T ss_pred             cccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCC-------cchhhhcccCcccEEECcCCccc
Confidence            111111112468999999999876532 2345899999999765322       12122778999999999999864

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.18  E-value=1.3e-07  Score=90.95  Aligned_cols=81  Identities=19%  Similarity=0.128  Sum_probs=54.1

Q ss_pred             CCceEEEEEecCCCccccCC--cccccCCeeEEEEcceeec-ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcc-c
Q 047644          124 RNVREIEIDLRDHERIPLPA--SIYRSITLEVLRLRSYFAL-TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPC-L  199 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~--~~~~c~~L~~L~L~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~-L  199 (314)
                      .++++|++..+...  .+|.  .+..+++|+.|.++++... ..| ....+++|+.|.|.+..++  .+..-+..++. |
T Consensus       305 ~~L~~L~L~~n~l~--~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L  379 (636)
T 4eco_A          305 EKIQIIYIGYNNLK--TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQV  379 (636)
T ss_dssp             GTCCEEECCSSCCS--SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTC
T ss_pred             CCCCEEECCCCcCC--ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccC
Confidence            57788888776543  5666  6677778888888777555 555 5556677777777776654  23333556676 7


Q ss_pred             cceeeeeeec
Q 047644          200 QHLSLTVYFT  209 (314)
Q Consensus       200 e~L~L~~c~~  209 (314)
                      ++|++.++..
T Consensus       380 ~~L~Ls~N~l  389 (636)
T 4eco_A          380 ENLSFAHNKL  389 (636)
T ss_dssp             CEEECCSSCC
T ss_pred             cEEEccCCcC
Confidence            7777777654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=98.17  E-value=4.4e-09  Score=94.94  Aligned_cols=211  Identities=14%  Similarity=0.028  Sum_probs=132.6

Q ss_pred             CCeeEEEEEeccCCC-cchHHHH---HHHHHh--CCceEEEEEecCCCcc---ccCCcccccCCeeEEEEcceeecccC-
Q 047644           96 SSVEKFSLRCSYLRS-LGMFDYW---VSSAIS--RNVREIEIDLRDHERI---PLPASIYRSITLEVLRLRSYFALTLP-  165 (314)
Q Consensus        96 ~~l~~l~l~~~~~~~-~~~~~~w---~~~~~~--~~l~~L~l~~~~~~~~---~l~~~~~~c~~L~~L~L~~~~~~~~~-  165 (314)
                      +.++.+.+....... ...+...   +..+..  .++++|+|+.+.....   .++..+..+++|++|.|+++.+.+.. 
T Consensus        60 ~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~  139 (386)
T 2ca6_A           60 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  139 (386)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence            348988887543211 1111112   222222  5899999987754322   45666778999999999998653221 


Q ss_pred             ----CCCcCC---------CCcceEEeeeEEcCCCcHH---HHhcCCccccceeeeeeeccCCCCC---c---EEEecCC
Q 047644          166 ----PDGVCF---------PRLKTFHLMLQQPTNHLPH---NLFSRCPCLQHLSLTVYFTAANPAS---N---LIISSAT  223 (314)
Q Consensus       166 ----~~~~~~---------~~L~~L~L~~~~~~~~~l~---~ll~~cp~Le~L~L~~c~~~~~~~~---~---~~i~~~~  223 (314)
                          .....+         ++|++|+|.++.+++..+.   ..+..++.|++|++.+|.. .+. +   .   .--..++
T Consensus       140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l-~~~-g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPE-GIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC-CHH-HHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCC-CHh-HHHHHHHHHhhcCCC
Confidence                011122         8999999999999766666   5667999999999999965 311 0   0   1124589


Q ss_pred             cceEEEEeeeeCCCCCCC---cceEEEEcCCccEEEeecccccce-------ee--cCCCCceeEEEeEEeccCCCCCCC
Q 047644          224 LKTFVLEVMYCSHSSAPN---QHTVTIVAPNLEFLDITDDLAVSY-------AV--HQLPSLHKAVYYVMFSEWPPIDRR  291 (314)
Q Consensus       224 Lk~L~i~~~~c~~~~~~~---~~~l~~~~p~L~~L~l~~~~~~~~-------~~--~~~p~L~~l~l~~~~~~~~~~~~~  291 (314)
                      |+.|+++  +|. .+..+   .....-..|+|++|+++++.....       .+  +.++.|+.+++..+......  ..
T Consensus       218 L~~L~Ls--~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g--~~  292 (386)
T 2ca6_A          218 LKVLDLQ--DNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA--VR  292 (386)
T ss_dssp             CCEEECC--SSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH--HH
T ss_pred             ccEEECc--CCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH--HH
Confidence            9999997  332 21100   111123679999999999865421       22  34899999999765321100  00


Q ss_pred             ChHHHh-hcCCCceEEEeecCCC
Q 047644          292 PPVQLL-AGMTKTKCLTLSAGVL  313 (314)
Q Consensus       292 ~~~~ll-~~~~~l~~L~l~~~~l  313 (314)
                      .+...+ .++++++.|.+++|.+
T Consensus       293 ~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          293 TLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECTTSBS
T ss_pred             HHHHHHHhcCCCceEEEccCCcC
Confidence            244445 6789999999999976

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.17  E-value=5.9e-07  Score=80.25  Aligned_cols=194  Identities=14%  Similarity=0.104  Sum_probs=106.2

Q ss_pred             HHHHHHHHHccCCCCCeeEEEEEeccCCCc----chHHHHHHHHH-hCCceEEEEEecCCC--------ccccCCccccc
Q 047644           82 FEKFVHSVLARTHPSSVEKFSLRCSYLRSL----GMFDYWVSSAI-SRNVREIEIDLRDHE--------RIPLPASIYRS  148 (314)
Q Consensus        82 ~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~----~~~~~w~~~~~-~~~l~~L~l~~~~~~--------~~~l~~~~~~c  148 (314)
                      +.+.+..+|.......++.+.+.... +++    ..+..+...+. -.++++|.+......        ...+...+..+
T Consensus        93 ~~~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~  171 (362)
T 2ra8_A           93 GVNLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAM  171 (362)
T ss_dssp             TCCHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTC
T ss_pred             HHHHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcC
Confidence            33455556655555557787776433 331    12333333221 258999988542211        11233444567


Q ss_pred             CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhc-CCccccceeeeeeecc--CC-----CCCcEEE-
Q 047644          149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFS-RCPCLQHLSLTVYFTA--AN-----PASNLII-  219 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~-~cp~Le~L~L~~c~~~--~~-----~~~~~~i-  219 (314)
                      ++|+.|.|+++.....+ . ...++|++|.|..+.++++.+..+.. .+|+|++|+|..+...  .+     +...+.. 
T Consensus       172 P~L~~L~L~g~~~l~l~-~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~  249 (362)
T 2ra8_A          172 PLLNNLKIKGTNNLSIG-K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD  249 (362)
T ss_dssp             TTCCEEEEECCBTCBCC-S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred             CCCcEEEEeCCCCceec-c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence            99999999887333443 2 35899999999988887777777653 7999999999643210  11     1001111 


Q ss_pred             ecCCcceEEEEeeeeCCCCCCCcceEE--EEcCCccEEEeecccccc-----e--eecCCCCceeEEEeEE
Q 047644          220 SSATLKTFVLEVMYCSHSSAPNQHTVT--IVAPNLEFLDITDDLAVS-----Y--AVHQLPSLHKAVYYVM  281 (314)
Q Consensus       220 ~~~~Lk~L~i~~~~c~~~~~~~~~~l~--~~~p~L~~L~l~~~~~~~-----~--~~~~~p~L~~l~l~~~  281 (314)
                      ..|+|+.|.+.  +|... +.+...+.  -.+|+|++|+++......     +  .+..++.|+.+++..+
T Consensus       250 ~~p~Lr~L~L~--~~~i~-~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          250 RFPNLKWLGIV--DAEEQ-NVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TCTTCCEEEEE--SCTTH-HHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             CCCCcCEEeCC--CCCCc-hHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            24678888775  34321 00000000  135677777776543321     0  1133566777766544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.16  E-value=2.3e-07  Score=92.03  Aligned_cols=14  Identities=14%  Similarity=0.019  Sum_probs=7.8

Q ss_pred             CCCceEEEeecCCC
Q 047644          300 MTKTKCLTLSAGVL  313 (314)
Q Consensus       300 ~~~l~~L~l~~~~l  313 (314)
                      |++++.|.|+.|.|
T Consensus       727 l~~L~~L~Ls~N~L  740 (876)
T 4ecn_A          727 TYLLTTIDLRFNKL  740 (876)
T ss_dssp             GGGCCEEECCSSCC
T ss_pred             cCCccEEECCCCCC
Confidence            34566666665544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.16  E-value=2.7e-08  Score=87.16  Aligned_cols=179  Identities=17%  Similarity=0.125  Sum_probs=113.5

Q ss_pred             hCCceEEEEEecCCCccccCCcc--cccCCeeEEEEcceeecccCCCCcCC-----CCcceEEeeeEEcCCCcHHHHhcC
Q 047644          123 SRNVREIEIDLRDHERIPLPASI--YRSITLEVLRLRSYFALTLPPDGVCF-----PRLKTFHLMLQQPTNHLPHNLFSR  195 (314)
Q Consensus       123 ~~~l~~L~l~~~~~~~~~l~~~~--~~c~~L~~L~L~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~l~~ll~~  195 (314)
                      ..++++|++..+... ..+|..+  ..+++|++|+|+++...+.|.....+     ++|++|+|.+..++.. ....+..
T Consensus        94 l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVT-GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCB-SCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCCC
T ss_pred             cCCccEEEccCCccc-chhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhcc
Confidence            468999999887533 2445544  66899999999998666554333333     8999999999988442 2244678


Q ss_pred             CccccceeeeeeeccCCC--CCcEE-EecCCcceEEEEeeeeCCCCCCC-cceEEEEcCCccEEEeecccccc----eee
Q 047644          196 CPCLQHLSLTVYFTAANP--ASNLI-ISSATLKTFVLEVMYCSHSSAPN-QHTVTIVAPNLEFLDITDDLAVS----YAV  267 (314)
Q Consensus       196 cp~Le~L~L~~c~~~~~~--~~~~~-i~~~~Lk~L~i~~~~c~~~~~~~-~~~l~~~~p~L~~L~l~~~~~~~----~~~  267 (314)
                      ++.|++|+++++......  ...+. -..++|+.|+++  ++....... ...+.-..++|++|++++.....    ..+
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~--~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  249 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALR--NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC  249 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECT--TSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECC--CCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence            999999999998630000  00011 244789999986  332210000 01111245899999999876542    234


Q ss_pred             cCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          268 HQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       268 ~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ..+++|+.+++..+....-       ...+.  ++++.|.++.|.|+
T Consensus       250 ~~l~~L~~L~Ls~N~l~~i-------p~~~~--~~L~~L~Ls~N~l~  287 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLKQV-------PKGLP--AKLSVLDLSYNRLD  287 (312)
T ss_dssp             CCCTTCCEEECTTSCCSSC-------CSSCC--SEEEEEECCSSCCC
T ss_pred             hhcCCCCEEECCCCccChh-------hhhcc--CCceEEECCCCCCC
Confidence            5578999999876532211       11111  79999999999874

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.15  E-value=3.5e-07  Score=81.76  Aligned_cols=190  Identities=14%  Similarity=0.092  Sum_probs=89.1

Q ss_pred             chHHHHHHHHHhCCceEEEEEecCCCc-c------ccCCcccccCCeeEEEEcceeec----------ccCCCCcCCCCc
Q 047644          112 GMFDYWVSSAISRNVREIEIDLRDHER-I------PLPASIYRSITLEVLRLRSYFAL----------TLPPDGVCFPRL  174 (314)
Q Consensus       112 ~~~~~w~~~~~~~~l~~L~l~~~~~~~-~------~l~~~~~~c~~L~~L~L~~~~~~----------~~~~~~~~~~~L  174 (314)
                      +.+.+++.......|+.|.+..+.... .      .+...+...++|+.|.+......          ++......+|+|
T Consensus        95 ~~~~~fl~~~~~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L  174 (362)
T 2ra8_A           95 NLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLL  174 (362)
T ss_dssp             CHHHHHHHCTTGGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTC
T ss_pred             HHHHHHhcCCCchhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCC
Confidence            344444444444568888887653210 0      11222233467887777543110          010011356777


Q ss_pred             ceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCC-CcEEE-ecCCcceEEEEeeeeCCCC--CCCc---ce-EE
Q 047644          175 KTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPA-SNLII-SSATLKTFVLEVMYCSHSS--APNQ---HT-VT  246 (314)
Q Consensus       175 ~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~-~~~~i-~~~~Lk~L~i~~~~c~~~~--~~~~---~~-l~  246 (314)
                      ++|+|.++..  ..+.. + ..|+|++|.|..|.. .+.. ..+.. ..|+|++|+++  .+....  ..+.   .. +.
T Consensus       175 ~~L~L~g~~~--l~l~~-~-~~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~--~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          175 NNLKIKGTNN--LSIGK-K-PRPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLY--VGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             CEEEEECCBT--CBCCS-C-BCTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEE--CBCGGGTCCSCGGGTGGGSC
T ss_pred             cEEEEeCCCC--ceecc-c-cCCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEe--ccccccccchhHHHHHHHHh
Confidence            7777766421  11111 1 266777777766643 2110 01111 35777777775  221111  1001   01 11


Q ss_pred             -EEcCCccEEEeecccccc----e--eecCCCCceeEEEeEEeccCCCCCCCC---hHHHhhcCCCceEEEeecCCC
Q 047644          247 -IVAPNLEFLDITDDLAVS----Y--AVHQLPSLHKAVYYVMFSEWPPIDRRP---PVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       247 -~~~p~L~~L~l~~~~~~~----~--~~~~~p~L~~l~l~~~~~~~~~~~~~~---~~~ll~~~~~l~~L~l~~~~l  313 (314)
                       -.+|+|++|.+.++....    .  ....+|.|+.++|+.+...     ...   +...+..+++++.|.|+.|.|
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~-----d~G~~~L~~~L~~l~~L~~L~L~~n~i  319 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT-----DEGARLLLDHVDKIKHLKFINMKYNYL  319 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB-----HHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC-----hHHHHHHHhhcccCCcceEEECCCCcC
Confidence             135777777776654320    0  1124677777777543110     111   222235578888888877754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.13  E-value=4.8e-06  Score=79.69  Aligned_cols=131  Identities=14%  Similarity=0.036  Sum_probs=75.3

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+...  .+|.   .+++|++|+|+++.+...| .  .+++|+.|+|.+..++.-     -...+.|+.|+
T Consensus        61 ~~L~~L~L~~N~l~--~lp~---~l~~L~~L~Ls~N~l~~lp-~--~l~~L~~L~Ls~N~l~~l-----~~~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLT--SLPA---LPPELRTLEVSGNQLTSLP-V--LPPGLLELSIFSNPLTHL-----PALPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCS--CCCC---CCTTCCEEEECSCCCSCCC-C--CCTTCCEEEECSCCCCCC-----CCCCTTCCEEE
T ss_pred             CCCcEEEecCCCCC--CCCC---cCCCCCEEEcCCCcCCcCC-C--CCCCCCEEECcCCcCCCC-----CCCCCCcCEEE
Confidence            46777777665432  3333   3467777777776555544 2  667777777777665321     11456777777


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEEeEE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l~~~  281 (314)
                      +.++.. ..+    ....++|+.|+++  +|.. ..  .   .-..++|+.|.+++.....+. ..+++|+.++++.+
T Consensus       128 L~~N~l-~~l----p~~l~~L~~L~Ls--~N~l-~~--l---~~~~~~L~~L~L~~N~l~~l~-~~~~~L~~L~Ls~N  191 (622)
T 3g06_A          128 IFGNQL-TSL----PVLPPGLQELSVS--DNQL-AS--L---PALPSELCKLWAYNNQLTSLP-MLPSGLQELSVSDN  191 (622)
T ss_dssp             CCSSCC-SCC----CCCCTTCCEEECC--SSCC-SC--C---CCCCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred             CCCCCC-CcC----CCCCCCCCEEECc--CCcC-CC--c---CCccCCCCEEECCCCCCCCCc-ccCCCCcEEECCCC
Confidence            777654 333    1123777777776  3322 11  1   113467777777776554333 45677888877654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.12  E-value=6e-06  Score=78.10  Aligned_cols=19  Identities=21%  Similarity=0.272  Sum_probs=12.6

Q ss_pred             HHhhcCCCceEEEeecCCC
Q 047644          295 QLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       295 ~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..+.++++++.|.++.|.+
T Consensus       397 ~~~~~l~~L~~L~l~~N~l  415 (562)
T 3a79_B          397 LMTKNMSSLETLDVSLNSL  415 (562)
T ss_dssp             HTTTTCTTCCEEECTTSCC
T ss_pred             hhhcCCCCCCEEECCCCcC
Confidence            4456677777777776654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.12  E-value=1.5e-06  Score=72.44  Aligned_cols=133  Identities=20%  Similarity=0.170  Sum_probs=73.1

Q ss_pred             cccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcE
Q 047644          139 IPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNL  217 (314)
Q Consensus       139 ~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~  217 (314)
                      ..+|..+  .++|+.|.|+++.+...+ .....+++|+.|+|.+..++.- -...+..++.|+.|+|+++.. ..+....
T Consensus        32 ~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~  107 (229)
T 3e6j_A           32 ASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGTNQL-TVLPSAV  107 (229)
T ss_dssp             SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred             CccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCCCcC-CccChhH
Confidence            3445433  278888888887665553 2455788888888888877321 123456788888888888754 3220110


Q ss_pred             EEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644          218 IISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV  280 (314)
Q Consensus       218 ~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~  280 (314)
                      .-..++|+.|+++   .+....- +.. ....++|++|++++.....+   .+..+++|+.+++..
T Consensus       108 ~~~l~~L~~L~Ls---~N~l~~l-p~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          108 FDRLVHLKELFMC---CNKLTEL-PRG-IERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             TTTCTTCCEEECC---SSCCCSC-CTT-GGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             hCcchhhCeEecc---CCccccc-Ccc-cccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            1134567777765   2221110 111 12446666666666543311   244455666555543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.12  E-value=1e-05  Score=80.36  Aligned_cols=103  Identities=15%  Similarity=0.025  Sum_probs=52.6

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      ++++|+++.+.... ..+..+..+++|+.|.|+++.....+ .....+++|+.|+|.+..++.. ....+..+|.|+.|+
T Consensus       267 ~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~  344 (844)
T 3j0a_A          267 SVRHLDLSHGFVFS-LNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL-YSSNFYGLPKVAYID  344 (844)
T ss_dssp             CCCEEECTTCCCCE-ECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-CSCSCSSCTTCCEEE
T ss_pred             CccEEECCCCcccc-cChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-CHHHhcCCCCCCEEE
Confidence            56666665443221 12333444567777777666444432 2345666777777766665321 122345666777777


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLE  230 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~  230 (314)
                      +.++.. ..+.....-..++|+.|+++
T Consensus       345 L~~N~i-~~~~~~~~~~l~~L~~L~Ls  370 (844)
T 3j0a_A          345 LQKNHI-AIIQDQTFKFLEKLQTLDLR  370 (844)
T ss_dssp             CCSCCC-CCCCSSCSCSCCCCCEEEEE
T ss_pred             CCCCCC-CccChhhhcCCCCCCEEECC
Confidence            766643 22201111124566666665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.10  E-value=3.9e-07  Score=70.52  Aligned_cols=59  Identities=15%  Similarity=0.011  Sum_probs=44.1

Q ss_pred             cCCeeEEEEcceeec--ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          148 SITLEVLRLRSYFAL--TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       148 c~~L~~L~L~~~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      .++|+.|.++++...  ..|.....+++|+.|+|.++.++..   ..+..++.|+.|+++++..
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i   76 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRV   76 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcc
Confidence            367888888888665  4554556788888888888877443   5567888888888888765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.10  E-value=2.1e-06  Score=70.31  Aligned_cols=127  Identities=17%  Similarity=0.077  Sum_probs=70.1

Q ss_pred             CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      ++|++|.++++.....++ ....+++|++|+|.+..++.- ....+..++.|++|+|.++.. ..+.....-..++|+.|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQL-QSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcC-CccCHhHhcCccCCCEE
Confidence            578888888776555542 245678888888887766421 233456778888888887754 32201101134567777


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeEE
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~  281 (314)
                      +++  ++ ..... .....-..++|++|++++.....   ..+..++.|+.+++...
T Consensus       106 ~L~--~N-~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          106 ALN--TN-QLQSL-PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             ECC--SS-CCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             EcC--CC-cCccc-CHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            765  22 11111 11111235677777777654331   12455667776666543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.09  E-value=9.6e-06  Score=76.77  Aligned_cols=156  Identities=17%  Similarity=0.048  Sum_probs=99.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+...  .+|   ..+++|+.|.|+++.+...|.   ...+|+.|+|.+..++.  +..   .++.|+.|+
T Consensus        80 ~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~ip~---l~~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~  146 (571)
T 3cvr_A           80 PQITVLEITQNALI--SLP---ELPASLEYLDACDNRLSTLPE---LPASLKHLDVDNNQLTM--LPE---LPALLEYIN  146 (571)
T ss_dssp             TTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEEE
T ss_pred             CCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCCcch---hhcCCCEEECCCCcCCC--CCC---cCccccEEe
Confidence            46888888776543  444   346888888888886666653   22288888888887733  222   678999999


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccccee-ecCCCCc-------ee
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYA-VHQLPSL-------HK  275 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~-~~~~p~L-------~~  275 (314)
                      |+++.. ..+ ..   ..++|+.|+++  ++. ...  ...  +. ++|++|++++.....+. +.+  +|       +.
T Consensus       147 Ls~N~l-~~l-p~---~l~~L~~L~Ls--~N~-L~~--lp~--l~-~~L~~L~Ls~N~L~~lp~~~~--~L~~~~~~L~~  211 (571)
T 3cvr_A          147 ADNNQL-TML-PE---LPTSLEVLSVR--NNQ-LTF--LPE--LP-ESLEALDVSTNLLESLPAVPV--RNHHSEETEIF  211 (571)
T ss_dssp             CCSSCC-SCC-CC---CCTTCCEEECC--SSC-CSC--CCC--CC-TTCCEEECCSSCCSSCCCCC----------CCEE
T ss_pred             CCCCcc-CcC-CC---cCCCcCEEECC--CCC-CCC--cch--hh-CCCCEEECcCCCCCchhhHHH--hhhcccccceE
Confidence            998866 444 22   45789999987  332 222  222  22 89999999987544211 111  45       66


Q ss_pred             EEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          276 AVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       276 l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      +++..+..       ..+..-+..+++++.|.|++|.|.
T Consensus       212 L~Ls~N~l-------~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          212 FRCRENRI-------THIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             EECCSSCC-------CCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             EecCCCcc-------eecCHHHhcCCCCCEEEeeCCcCC
Confidence            66654322       123333455999999999999873

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.09  E-value=6e-07  Score=76.40  Aligned_cols=35  Identities=20%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             ccCCCChHHHHHHhcCCChhhhhhhhccccccccc
Q 047644           20 RISCLPDSILCQILSVPPTKDAVATSILSPRWKHA   54 (314)
Q Consensus        20 ~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l   54 (314)
                      .++.||+|++.+||+||+++|+++++.|||+||.+
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~l   38 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNET   38 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999999964

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.07  E-value=1.6e-08  Score=93.12  Aligned_cols=154  Identities=15%  Similarity=0.035  Sum_probs=68.3

Q ss_pred             CeeEEEEcceeecc-----cCCCCcCCCCcceEEeeeEEcCCCcHHHHh----cCCccccceeeeeeeccCCCCCcEEE-
Q 047644          150 TLEVLRLRSYFALT-----LPPDGVCFPRLKTFHLMLQQPTNHLPHNLF----SRCPCLQHLSLTVYFTAANPASNLII-  219 (314)
Q Consensus       150 ~L~~L~L~~~~~~~-----~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll----~~cp~Le~L~L~~c~~~~~~~~~~~i-  219 (314)
                      +|++|+|+++...+     .+.....+++|++|+|.++.+++..+..+.    ...+.|++|++.+|.. .+. ....+ 
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-~~~-~~~~l~  163 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL-SAA-SCEPLA  163 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC-BGG-GHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCC-CHH-HHHHHH
Confidence            46666665553321     111233455666666665555333333222    2244566666665543 211 10000 


Q ss_pred             ----ecCCcceEEEEeeeeCCCCCCCcceEE----EEcCCccEEEeecccccc-------eeecCCCCceeEEEeEEecc
Q 047644          220 ----SSATLKTFVLEVMYCSHSSAPNQHTVT----IVAPNLEFLDITDDLAVS-------YAVHQLPSLHKAVYYVMFSE  284 (314)
Q Consensus       220 ----~~~~Lk~L~i~~~~c~~~~~~~~~~l~----~~~p~L~~L~l~~~~~~~-------~~~~~~p~L~~l~l~~~~~~  284 (314)
                          ..++|+.|+++  ++. ....+...+.    ...++|++|+++++....       ..+..++.|+++++..+...
T Consensus       164 ~~l~~~~~L~~L~L~--~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          164 SVLRAKPDFKELTVS--NND-INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHCTTCCEEECC--SSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHhhCCCCCEEECc--CCC-cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence                23566666665  221 1111011110    013466777766654331       12334566776666543211


Q ss_pred             CCCCCCCCh----HHHhhcCCCceEEEeecCCC
Q 047644          285 WPPIDRRPP----VQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       285 ~~~~~~~~~----~~ll~~~~~l~~L~l~~~~l  313 (314)
                           ...+    ..+...+++++.|.++.|.+
T Consensus       241 -----~~~~~~l~~~~~~~~~~L~~L~L~~n~l  268 (461)
T 1z7x_W          241 -----DVGMAELCPGLLHPSSRLRTLWIWECGI  268 (461)
T ss_dssp             -----HHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             -----hHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence                 0011    12223567777777777654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.06  E-value=1.6e-06  Score=71.80  Aligned_cols=125  Identities=16%  Similarity=0.148  Sum_probs=63.3

Q ss_pred             CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      ++|+.|.|+++.....++ ....+++|+.|+|.+..++.- ....+.+++.|+.|+|+++.. ..+.....-..++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYGNKI-TELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCCCcC-CccCHhHccCCCCCCEE
Confidence            577888887775555542 445677888888877765321 123356677888888877754 32201111123556666


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEe
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYY  279 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~  279 (314)
                      +++  ++ ...... ....-..++|++|++++.....+   .+..+++|+.+++.
T Consensus       110 ~L~--~N-~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  160 (220)
T 2v9t_B          110 LLN--AN-KINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA  160 (220)
T ss_dssp             ECC--SS-CCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ECC--CC-CCCEeC-HHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeC
Confidence            664  11 111100 00011345666666665543311   23445555555544

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.05  E-value=1.6e-06  Score=81.19  Aligned_cols=59  Identities=14%  Similarity=0.124  Sum_probs=27.4

Q ss_pred             CCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          149 ITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      ++|++|+|+++...+.+ .....+++|++|+|.+..++.. ....+..++.|++|+|+++.
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc
Confidence            45555555555433332 1233455555555555544221 12234455555555555553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.05  E-value=1.2e-06  Score=73.92  Aligned_cols=150  Identities=17%  Similarity=0.085  Sum_probs=75.7

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .+++|++..+.... ..+..+..+++|++|.|+++...+.++ ....+++|+.|+|.+..++.- ....+..++.|++|+
T Consensus        36 ~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           36 DTEKLDLQSTGLAT-LSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             CCCEEEccCCCcCc-cCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEEE
Confidence            55666665543221 112234456677777777665544432 235567777777776665321 123445667777777


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYV  280 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~  280 (314)
                      |.++.. ..+.....-..++|+.|+++  ++ ..... .....-..++|++|++++.....   ..+..+++|+.+++..
T Consensus       114 L~~N~l-~~~~~~~~~~l~~L~~L~Ls--~N-~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  188 (251)
T 3m19_A          114 LGGNQL-KSLPSGVFDRLTKLKELRLN--TN-QLQSI-PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG  188 (251)
T ss_dssp             CCSSCC-CCCCTTTTTTCTTCCEEECC--SS-CCCCC-CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCCcC-CCcChhHhccCCcccEEECc--CC-cCCcc-CHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence            776644 22201101124566676665  22 21111 00011134677777777654431   1345667777777665


Q ss_pred             E
Q 047644          281 M  281 (314)
Q Consensus       281 ~  281 (314)
                      .
T Consensus       189 N  189 (251)
T 3m19_A          189 N  189 (251)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.05  E-value=6.3e-07  Score=86.73  Aligned_cols=18  Identities=17%  Similarity=0.266  Sum_probs=12.6

Q ss_pred             HhhcCCCceEEEeecCCC
Q 047644          296 LLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       296 ll~~~~~l~~L~l~~~~l  313 (314)
                      .+.++++++.|.++.|.|
T Consensus       555 ~~~~l~~L~~L~Ls~N~l  572 (680)
T 1ziw_A          555 VFKDLFELKIIDLGLNNL  572 (680)
T ss_dssp             TTTTCTTCCEEECCSSCC
T ss_pred             HcccccCcceeECCCCCC
Confidence            456777777777777655

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.04  E-value=1.8e-06  Score=75.27  Aligned_cols=149  Identities=13%  Similarity=0.081  Sum_probs=100.3

Q ss_pred             hCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecc---c--CCCCcCCCCcceEEeeeEEcCC--CcHHHHhcC
Q 047644          123 SRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALT---L--PPDGVCFPRLKTFHLMLQQPTN--HLPHNLFSR  195 (314)
Q Consensus       123 ~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~---~--~~~~~~~~~L~~L~L~~~~~~~--~~l~~ll~~  195 (314)
                      ..++++|+++.+... ...+..+..+++|++|+|+++....   .  +.....+++|++|+|.++.++.  .....++..
T Consensus       144 ~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            358999999887642 2233455678999999999985432   2  1133689999999999998842  122235688


Q ss_pred             CccccceeeeeeeccCCC-CCcEE--EecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCC
Q 047644          196 CPCLQHLSLTVYFTAANP-ASNLI--ISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLP  271 (314)
Q Consensus       196 cp~Le~L~L~~c~~~~~~-~~~~~--i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p  271 (314)
                      ++.|++|+|+++.. .+. +..+.  ...++|+.|+++  ++ ....- +..+   .++|++|++++..... ..+..+|
T Consensus       223 l~~L~~L~Ls~N~l-~~~~p~~~~~~~~~~~L~~L~Ls--~N-~l~~l-p~~~---~~~L~~L~Ls~N~l~~~~~~~~l~  294 (310)
T 4glp_A          223 GVQPHSLDLSHNSL-RATVNPSAPRCMWSSALNSLNLS--FA-GLEQV-PKGL---PAKLRVLDLSSNRLNRAPQPDELP  294 (310)
T ss_dssp             TCCCSSEECTTSCC-CCCCCSCCSSCCCCTTCCCEECC--SS-CCCSC-CSCC---CSCCSCEECCSCCCCSCCCTTSCC
T ss_pred             CCCCCEEECCCCCC-CccchhhHHhccCcCcCCEEECC--CC-CCCch-hhhh---cCCCCEEECCCCcCCCCchhhhCC
Confidence            99999999999976 332 01111  122799999997  33 32221 2222   3899999999886553 2357789


Q ss_pred             CceeEEEeE
Q 047644          272 SLHKAVYYV  280 (314)
Q Consensus       272 ~L~~l~l~~  280 (314)
                      .|+.+++..
T Consensus       295 ~L~~L~L~~  303 (310)
T 4glp_A          295 EVDNLTLDG  303 (310)
T ss_dssp             CCSCEECSS
T ss_pred             CccEEECcC
Confidence            999888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.04  E-value=5.8e-06  Score=69.13  Aligned_cols=176  Identities=7%  Similarity=-0.016  Sum_probs=110.1

Q ss_pred             CCceEEEEEecCCCccccCC-cccccCCeeEEEEccee-ecccCC-CCcCCCCcceEEeee-EEcCCCcHHHHhcCCccc
Q 047644          124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYF-ALTLPP-DGVCFPRLKTFHLML-QQPTNHLPHNLFSRCPCL  199 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~-~~~~~~-~~~~~~~L~~L~L~~-~~~~~~~l~~ll~~cp~L  199 (314)
                      ..+++|++..+...  .++. .+..+++|+.|.++++. ....++ ....+++|++|.|.+ ..++.- -...+.+++.|
T Consensus        31 ~~l~~L~l~~n~l~--~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIETHLR--TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEESCCCS--EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTC
T ss_pred             CcccEEEEeCCcce--EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCC
Confidence            48999999887533  3444 45568999999999985 555543 456899999999998 344221 12346789999


Q ss_pred             cceeeeeeeccCCCCCcEEEecCCcc---eEEEEeeeeCCCCCCCcceEEEEcCCcc-EEEeeccccccee--ecCCCCc
Q 047644          200 QHLSLTVYFTAANPASNLIISSATLK---TFVLEVMYCSHSSAPNQHTVTIVAPNLE-FLDITDDLAVSYA--VHQLPSL  273 (314)
Q Consensus       200 e~L~L~~c~~~~~~~~~~~i~~~~Lk---~L~i~~~~c~~~~~~~~~~l~~~~p~L~-~L~l~~~~~~~~~--~~~~p~L  273 (314)
                      ++|++.++.. .++ .. .-..++|+   .|+++  ++...... .....-..++|+ +|++++.....+.  ....++|
T Consensus       108 ~~L~l~~n~l-~~l-p~-~~~l~~L~~L~~L~l~--~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L  181 (239)
T 2xwt_C          108 KFLGIFNTGL-KMF-PD-LTKVYSTDIFFILEIT--DNPYMTSI-PVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKL  181 (239)
T ss_dssp             CEEEEEEECC-CSC-CC-CTTCCBCCSEEEEEEE--SCTTCCEE-CTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEE
T ss_pred             CEEeCCCCCC-ccc-cc-cccccccccccEEECC--CCcchhhc-CcccccchhcceeEEEcCCCCCcccCHhhcCCCCC
Confidence            9999999965 444 22 11334555   88887  33121110 000112468899 9999887544221  1122678


Q ss_pred             eeEEEeEEe-ccCCCCCCCChHHHhhcC-CCceEEEeecCCCC
Q 047644          274 HKAVYYVMF-SEWPPIDRRPPVQLLAGM-TKTKCLTLSAGVLH  314 (314)
Q Consensus       274 ~~l~l~~~~-~~~~~~~~~~~~~ll~~~-~~l~~L~l~~~~l~  314 (314)
                      +++++..+. ..      ......+.++ ++++.|.++.|.|+
T Consensus       182 ~~L~L~~n~~l~------~i~~~~~~~l~~~L~~L~l~~N~l~  218 (239)
T 2xwt_C          182 DAVYLNKNKYLT------VIDKDAFGGVYSGPSLLDVSQTSVT  218 (239)
T ss_dssp             EEEECTTCTTCC------EECTTTTTTCSBCCSEEECTTCCCC
T ss_pred             CEEEcCCCCCcc------cCCHHHhhccccCCcEEECCCCccc
Confidence            888776541 11      1112346677 99999999998764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.03  E-value=5.8e-06  Score=79.15  Aligned_cols=150  Identities=20%  Similarity=0.151  Sum_probs=94.2

Q ss_pred             CeeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcce
Q 047644           97 SVEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKT  176 (314)
Q Consensus        97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~  176 (314)
                      .++.+.+....-..-..        ...++++|+++.+...  .+|.   ..++|++|+|+++.....| .  .+++|+.
T Consensus        62 ~L~~L~L~~N~l~~lp~--------~l~~L~~L~Ls~N~l~--~lp~---~l~~L~~L~Ls~N~l~~l~-~--~l~~L~~  125 (622)
T 3g06_A           62 HITTLVIPDNNLTSLPA--------LPPELRTLEVSGNQLT--SLPV---LPPGLLELSIFSNPLTHLP-A--LPSGLCK  125 (622)
T ss_dssp             TCSEEEECSCCCSCCCC--------CCTTCCEEEECSCCCS--CCCC---CCTTCCEEEECSCCCCCCC-C--CCTTCCE
T ss_pred             CCcEEEecCCCCCCCCC--------cCCCCCEEEcCCCcCC--cCCC---CCCCCCEEECcCCcCCCCC-C--CCCCcCE
Confidence            47777776554211111        1257889988877533  3444   5688999999888666665 2  6788999


Q ss_pred             EEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEE
Q 047644          177 FHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLD  256 (314)
Q Consensus       177 L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~  256 (314)
                      |+|.+..++.     +-...|+|++|+|++|.. .++ .   -..++|+.|.+.  ++ ....     +....++|++|+
T Consensus       126 L~L~~N~l~~-----lp~~l~~L~~L~Ls~N~l-~~l-~---~~~~~L~~L~L~--~N-~l~~-----l~~~~~~L~~L~  187 (622)
T 3g06_A          126 LWIFGNQLTS-----LPVLPPGLQELSVSDNQL-ASL-P---ALPSELCKLWAY--NN-QLTS-----LPMLPSGLQELS  187 (622)
T ss_dssp             EECCSSCCSC-----CCCCCTTCCEEECCSSCC-SCC-C---CCCTTCCEEECC--SS-CCSC-----CCCCCTTCCEEE
T ss_pred             EECCCCCCCc-----CCCCCCCCCEEECcCCcC-CCc-C---CccCCCCEEECC--CC-CCCC-----CcccCCCCcEEE
Confidence            9988877632     112458899999998865 433 2   134678888886  22 2111     113468899998


Q ss_pred             eecccccceeecCCCCceeEEEeEE
Q 047644          257 ITDDLAVSYAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       257 l~~~~~~~~~~~~~p~L~~l~l~~~  281 (314)
                      +++.....+. ..+++|+.+++..+
T Consensus       188 Ls~N~l~~l~-~~~~~L~~L~L~~N  211 (622)
T 3g06_A          188 VSDNQLASLP-TLPSELYKLWAYNN  211 (622)
T ss_dssp             CCSSCCSCCC-CCCTTCCEEECCSS
T ss_pred             CCCCCCCCCC-CccchhhEEECcCC
Confidence            8887654221 23567777776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.01  E-value=1.2e-05  Score=76.22  Aligned_cols=132  Identities=11%  Similarity=0.033  Sum_probs=64.8

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+....  +|. +..  +|+.|.|+++.+...| .  .+++|+.|+|.+..++.  +..   .++.|++|+
T Consensus       100 ~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls~N~l~~lp-~--~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~  166 (571)
T 3cvr_A          100 ASLEYLDACDNRLST--LPE-LPA--SLKHLDVDNNQLTMLP-E--LPALLEYINADNNQLTM--LPE---LPTSLEVLS  166 (571)
T ss_dssp             TTCCEEECCSSCCSC--CCC-CCT--TCCEEECCSSCCSCCC-C--CCTTCCEEECCSSCCSC--CCC---CCTTCCEEE
T ss_pred             CCCCEEEccCCCCCC--cch-hhc--CCCEEECCCCcCCCCC-C--cCccccEEeCCCCccCc--CCC---cCCCcCEEE
Confidence            456666666554322  343 222  6666666666555544 2  56666666666666532  111   456666666


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCc-------cEEEeecccccc--eeecCCCCce
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNL-------EFLDITDDLAVS--YAVHQLPSLH  274 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L-------~~L~l~~~~~~~--~~~~~~p~L~  274 (314)
                      |+++.. .++ ..  +. ++|+.|+++  ++ ....  ...  + .++|       ++|++++.....  ..+.++++|+
T Consensus       167 Ls~N~L-~~l-p~--l~-~~L~~L~Ls--~N-~L~~--lp~--~-~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~  233 (571)
T 3cvr_A          167 VRNNQL-TFL-PE--LP-ESLEALDVS--TN-LLES--LPA--V-PVRNHHSEETEIFFRCRENRITHIPENILSLDPTC  233 (571)
T ss_dssp             CCSSCC-SCC-CC--CC-TTCCEEECC--SS-CCSS--CCC--C-C--------CCEEEECCSSCCCCCCGGGGGSCTTE
T ss_pred             CCCCCC-CCc-ch--hh-CCCCEEECc--CC-CCCc--hhh--H-HHhhhcccccceEEecCCCcceecCHHHhcCCCCC
Confidence            666654 334 22  22 666666665  22 2111  111  1 1144       666666654331  1234466666


Q ss_pred             eEEEeEE
Q 047644          275 KAVYYVM  281 (314)
Q Consensus       275 ~l~l~~~  281 (314)
                      .++++.+
T Consensus       234 ~L~L~~N  240 (571)
T 3cvr_A          234 TIILEDN  240 (571)
T ss_dssp             EEECCSS
T ss_pred             EEEeeCC
Confidence            6666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.97  E-value=7e-08  Score=86.34  Aligned_cols=184  Identities=12%  Similarity=0.058  Sum_probs=114.6

Q ss_pred             CCceEEEEEecCCCccc---cCCcccccC-CeeEEEEcceeecccCC-CCcC-----CCCcceEEeeeEEcCCCc---HH
Q 047644          124 RNVREIEIDLRDHERIP---LPASIYRSI-TLEVLRLRSYFALTLPP-DGVC-----FPRLKTFHLMLQQPTNHL---PH  190 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~---l~~~~~~c~-~L~~L~L~~~~~~~~~~-~~~~-----~~~L~~L~L~~~~~~~~~---l~  190 (314)
                      +++++|+++.+......   +...+..++ +|++|+|+++...+... ....     +++|++|+|.++.+++..   +.
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            46999999877532211   113344566 89999999986554321 1122     399999999999985433   44


Q ss_pred             HHhcCC-ccccceeeeeeeccCCCCCcEEE----e--cCCcceEEEEeeeeCCCCCCCcceEE---EEc-CCccEEEeec
Q 047644          191 NLFSRC-PCLQHLSLTVYFTAANPASNLII----S--SATLKTFVLEVMYCSHSSAPNQHTVT---IVA-PNLEFLDITD  259 (314)
Q Consensus       191 ~ll~~c-p~Le~L~L~~c~~~~~~~~~~~i----~--~~~Lk~L~i~~~~c~~~~~~~~~~l~---~~~-p~L~~L~l~~  259 (314)
                      ..+..+ +.|++|+|++|.. .+. ....+    .  ..+|+.|+++  +|. ....+...+.   ... ++|++|++++
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l-~~~-~~~~l~~~l~~~~~~L~~L~Ls--~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDF-SSK-SSSEFKQAFSNLPASITSLNLR--GND-LGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCG-GGS-CHHHHHHHHTTSCTTCCEEECT--TSC-GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHhCCCCccEEECcCCcC-CcH-HHHHHHHHHHhCCCceeEEEcc--CCc-CCHHHHHHHHHHHhcCCccccEeeecC
Confidence            556666 8999999999976 433 22111    1  3699999997  332 2222221111   123 4999999999


Q ss_pred             ccccce-------eecCC-CCceeEEEeEEeccCCCCCCCChHHHhhc-CCCceEEEeecCCCC
Q 047644          260 DLAVSY-------AVHQL-PSLHKAVYYVMFSEWPPIDRRPPVQLLAG-MTKTKCLTLSAGVLH  314 (314)
Q Consensus       260 ~~~~~~-------~~~~~-p~L~~l~l~~~~~~~~~~~~~~~~~ll~~-~~~l~~L~l~~~~l~  314 (314)
                      +.....       .+... +.|++++++.+......  ...+...+.. .++++.|.|+.|.|.
T Consensus       177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKS--YAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC--HHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhH--HHHHHHHHhcCCCCceEEECcCCCCC
Confidence            865411       23445 49999999865332110  1124445555 569999999999763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.95  E-value=3.2e-06  Score=72.33  Aligned_cols=157  Identities=17%  Similarity=0.068  Sum_probs=92.3

Q ss_pred             CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      ++|++|.++++...+.++ ....+++|+.|+|.+..++.- ....+..++.|++|++.++.. ........-..++|+.|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L  105 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL  105 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECTTTTTTCTTCCEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCcc-CccChhhhcCCccccEE
Confidence            578888888876555542 455778888888887766321 122456778888888887754 21100000134678888


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc----eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCc
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS----YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKT  303 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~----~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l  303 (314)
                      ++.  ++......  ....-..++|++|++++.....    ..+.+++.|+++++..+.....   ......-+..++.+
T Consensus       106 ~l~--~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~l  178 (276)
T 2z62_A          106 VAV--ETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI---YCTDLRVLHQMPLL  178 (276)
T ss_dssp             ECT--TSCCCCST--TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE---CGGGGHHHHTCTTC
T ss_pred             ECC--CCCccccC--chhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC---CHHHhhhhhhcccc
Confidence            775  23221111  1112256899999999875432    3467789999999876522110   11122334455555


Q ss_pred             e-EEEeecCCCC
Q 047644          304 K-CLTLSAGVLH  314 (314)
Q Consensus       304 ~-~L~l~~~~l~  314 (314)
                      . .|.++.|.++
T Consensus       179 ~l~L~ls~n~l~  190 (276)
T 2z62_A          179 NLSLDLSLNPMN  190 (276)
T ss_dssp             CEEEECCSSCCC
T ss_pred             ceeeecCCCccc
Confidence            4 8888888763

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.91  E-value=6.8e-07  Score=76.27  Aligned_cols=143  Identities=11%  Similarity=-0.004  Sum_probs=91.1

Q ss_pred             CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEE
Q 047644          149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFV  228 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~  228 (314)
                      .+++.+.++.+...+.+ ....+++|+.|+|.++.+++-  . -+..++.|++|++.++.. .++ .. --..++|+.|+
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i-~~~-~~-l~~l~~L~~L~   91 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQI-SDL-SP-LKDLTKLEELS   91 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCC-CCC-GG-GTTCSSCCEEE
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCcc-CCC-hh-hccCCCCCEEE
Confidence            34444555554444444 456789999999999988442  2 367899999999999976 555 33 12457899999


Q ss_pred             EEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc-eeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEE
Q 047644          229 LEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS-YAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLT  307 (314)
Q Consensus       229 i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~-~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~  307 (314)
                      ++  ++......   .+..  ++|++|++++..... ..+..+++|+.+++..+....       + ..+..+++++.|.
T Consensus        92 L~--~N~l~~l~---~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-------~-~~l~~l~~L~~L~  156 (263)
T 1xeu_A           92 VN--RNRLKNLN---GIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKS-------I-VMLGFLSKLEVLD  156 (263)
T ss_dssp             CC--SSCCSCCT---TCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCB-------C-GGGGGCTTCCEEE
T ss_pred             CC--CCccCCcC---cccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCC-------C-hHHccCCCCCEEE
Confidence            87  33222211   1111  889999998875542 236678888888876542211       1 1356667777777


Q ss_pred             eecCCC
Q 047644          308 LSAGVL  313 (314)
Q Consensus       308 l~~~~l  313 (314)
                      ++.|.+
T Consensus       157 L~~N~i  162 (263)
T 1xeu_A          157 LHGNEI  162 (263)
T ss_dssp             CTTSCC
T ss_pred             CCCCcC
Confidence            776655

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.91  E-value=2.6e-06  Score=69.65  Aligned_cols=142  Identities=15%  Similarity=0.145  Sum_probs=64.1

Q ss_pred             CceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          125 NVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      ++++|+++.+...  .++.. +..+++|++|.++++.....+.. ...+++|+.|+|.+..++.- ....+..++.|++|
T Consensus        29 ~l~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDLETNSLK--SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCccC--cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence            4555555554322  22322 23456666666666544444322 24566666666666555321 12234556666666


Q ss_pred             eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceeecCCCCceeEEE
Q 047644          203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAVHQLPSLHKAVY  278 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~~~~p~L~~l~l  278 (314)
                      ++.++.. ..+.....-..++|+.|+++  ++.. ... .....-..++|++|++++....    ..+|.|+.+.+
T Consensus       106 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~--~N~l-~~~-~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~L~~  172 (208)
T 2o6s_A          106 ALNTNQL-QSLPDGVFDKLTQLKDLRLY--QNQL-KSV-PDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSE  172 (208)
T ss_dssp             ECCSSCC-CCCCTTTTTTCTTCCEEECC--SSCC-SCC-CTTTTTTCTTCCEEECCSCCBC----CCTTTTHHHHH
T ss_pred             EcCCCcC-cccCHhHhccCCcCCEEECC--CCcc-cee-CHHHhccCCCccEEEecCCCee----cCCCCHHHHHH
Confidence            6666543 22200000123556666664  2211 110 1111113466666666665321    34444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.88  E-value=8.5e-07  Score=70.71  Aligned_cols=126  Identities=12%  Similarity=0.084  Sum_probs=66.2

Q ss_pred             cccCCeeEEEEcceeecccCCCCcC-CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCc
Q 047644          146 YRSITLEVLRLRSYFALTLPPDGVC-FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATL  224 (314)
Q Consensus       146 ~~c~~L~~L~L~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~L  224 (314)
                      ..+.+|+.|.++++.....+ .... +++|+.|+|.+..++.  + .-+..++.|+.|+++++.. ..++..+.-..++|
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL   90 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred             CCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCcc-cccCcchhhcCCCC
Confidence            45677777777777555554 3333 3477777777776643  2 3456777777777777754 21100111134566


Q ss_pred             ceEEEEeeeeCCCCCCCcce--EEEEcCCccEEEeecccccc--e----eecCCCCceeEEEeEE
Q 047644          225 KTFVLEVMYCSHSSAPNQHT--VTIVAPNLEFLDITDDLAVS--Y----AVHQLPSLHKAVYYVM  281 (314)
Q Consensus       225 k~L~i~~~~c~~~~~~~~~~--l~~~~p~L~~L~l~~~~~~~--~----~~~~~p~L~~l~l~~~  281 (314)
                      +.|+++  ++.. ..  ...  ..-..|+|++|.+++.....  .    .+..+|.|+.+++...
T Consensus        91 ~~L~L~--~N~i-~~--~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           91 TELILT--NNSL-VE--LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CEEECC--SCCC-CC--GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CEEECC--CCcC-Cc--chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            666665  2211 11  111  11145667777776654321  1    2445566665555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.86  E-value=1.4e-07  Score=84.39  Aligned_cols=212  Identities=12%  Similarity=0.028  Sum_probs=123.7

Q ss_pred             CeeEEEEEeccCCCcchHHHHHHHHHh--CCceEEEEEecCCCcc---ccCCccccc-CCeeEEEEcceeecccCCC---
Q 047644           97 SVEKFSLRCSYLRSLGMFDYWVSSAIS--RNVREIEIDLRDHERI---PLPASIYRS-ITLEVLRLRSYFALTLPPD---  167 (314)
Q Consensus        97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~~~---~l~~~~~~c-~~L~~L~L~~~~~~~~~~~---  167 (314)
                      .++.+.+....- .......+......  .++++|+++.+.....   .+...+..+ ++|+.|+|+++...+.+..   
T Consensus        52 ~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  130 (362)
T 3goz_A           52 SVTSLNLSGNSL-GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFK  130 (362)
T ss_dssp             TCCEEECCSSCG-GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ceeEEECcCCCC-CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHH
Confidence            488888876542 22222222222111  5799999988753221   111123344 7999999999866544211   


Q ss_pred             --CcC-CCCcceEEeeeEEcCCCcHHH---HhcCCc-cccceeeeeeeccCCCCCcEEE-----ec-CCcceEEEEeeee
Q 047644          168 --GVC-FPRLKTFHLMLQQPTNHLPHN---LFSRCP-CLQHLSLTVYFTAANPASNLII-----SS-ATLKTFVLEVMYC  234 (314)
Q Consensus       168 --~~~-~~~L~~L~L~~~~~~~~~l~~---ll~~cp-~Le~L~L~~c~~~~~~~~~~~i-----~~-~~Lk~L~i~~~~c  234 (314)
                        ... .++|++|+|.++.+++.+...   .+..+| .|++|+|++|.. .+. ....+     .. ++|+.|+++  ++
T Consensus       131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~~~-~~~~l~~~l~~~~~~L~~L~Ls--~N  206 (362)
T 3goz_A          131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL-ASK-NCAELAKFLASIPASVTSLDLS--AN  206 (362)
T ss_dssp             HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG-GGS-CHHHHHHHHHTSCTTCCEEECT--TS
T ss_pred             HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC-chh-hHHHHHHHHHhCCCCCCEEECC--CC
Confidence              112 358999999999886544443   455666 999999999965 433 21111     22 589999997  33


Q ss_pred             CCCCCCCcceEE---EE-cCCccEEEeecccccc-------eeecCCCCceeEEEeEEeccCCCCC-CCChHHHhhcCCC
Q 047644          235 SHSSAPNQHTVT---IV-APNLEFLDITDDLAVS-------YAVHQLPSLHKAVYYVMFSEWPPID-RRPPVQLLAGMTK  302 (314)
Q Consensus       235 ~~~~~~~~~~l~---~~-~p~L~~L~l~~~~~~~-------~~~~~~p~L~~l~l~~~~~~~~~~~-~~~~~~ll~~~~~  302 (314)
                      . ....+...+.   .. .++|++|++++.....       ..+..++.|+.+++..+........ ...+...+..+++
T Consensus       207 ~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~  285 (362)
T 3goz_A          207 L-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQK  285 (362)
T ss_dssp             C-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCE
T ss_pred             C-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCc
Confidence            2 2222221111   12 4699999999876542       2236678999999987642211000 0112334557778


Q ss_pred             ceEEEeecCCCC
Q 047644          303 TKCLTLSAGVLH  314 (314)
Q Consensus       303 l~~L~l~~~~l~  314 (314)
                      ++.|.+++|.++
T Consensus       286 L~~LdL~~N~l~  297 (362)
T 3goz_A          286 IILVDKNGKEIH  297 (362)
T ss_dssp             EEEECTTSCBCC
T ss_pred             eEEEecCCCcCC
Confidence            888889888763

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.86  E-value=2.8e-06  Score=77.82  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=37.5

Q ss_pred             CCcccCCCChHHHHHHhcCCChhhhhhhhcccccccccccc
Q 047644           17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTS   57 (314)
Q Consensus        17 ~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~   57 (314)
                      ..|.++.||+|++.+||+||+.+|++++++|||+|+++...
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999976543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.85  E-value=1.9e-05  Score=72.71  Aligned_cols=118  Identities=14%  Similarity=0.095  Sum_probs=66.6

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|++..+...  .+| .+..+++|++|.++++.....|   ...++|+.|+|.+..++.  +.. +..++.|++|+
T Consensus       131 ~~L~~L~L~~n~l~--~lp-~~~~l~~L~~L~l~~N~l~~lp---~~~~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLE--KLP-ELQNSSFLKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEE--LPE-LQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCS--SCC-CCTTCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSS--CCC-CTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCC--CCc-ccCCCCCCCEEECCCCcCcccC---CCcccccEEECcCCcCCc--Ccc-ccCCCCCCEEE
Confidence            46777777665433  244 4666778888888777554443   223577888887776633  221 56778888888


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccc
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDL  261 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~  261 (314)
                      +.+|.. .++ ..   ..++|+.|+++  +|....   ... ....++|++|++++..
T Consensus       202 l~~N~l-~~l-~~---~~~~L~~L~l~--~n~l~~---lp~-~~~l~~L~~L~l~~N~  248 (454)
T 1jl5_A          202 ADNNSL-KKL-PD---LPLSLESIVAG--NNILEE---LPE-LQNLPFLTTIYADNNL  248 (454)
T ss_dssp             CCSSCC-SSC-CC---CCTTCCEEECC--SSCCSS---CCC-CTTCTTCCEEECCSSC
T ss_pred             CCCCcC-CcC-CC---CcCcccEEECc--CCcCCc---ccc-cCCCCCCCEEECCCCc
Confidence            877754 332 11   12466666665  232211   111 1245566666666543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.83  E-value=1.4e-07  Score=76.83  Aligned_cols=63  Identities=13%  Similarity=0.019  Sum_probs=36.1

Q ss_pred             cccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          144 SIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       144 ~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      .+..+++|++|.|+++...+.| ....+++|+.|+|.+..++.  +...+..+|.|+.|++.++..
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l  105 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI  105 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEEC
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcC
Confidence            4445566666666666555544 44556666666666666542  333444456666666666644

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.77  E-value=8.8e-06  Score=77.57  Aligned_cols=127  Identities=16%  Similarity=0.067  Sum_probs=69.4

Q ss_pred             CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      +++++|+|++......++ .+..+++|+.|+|.++.++.- -...+.++++|++|+|+++.. ..++....-..++|+.|
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l-~~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKL  129 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCC-CEECGGGGTTCTTCCEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcC-CCCCHHHhcCCCCCCEE
Confidence            366777777765555442 345677777777777655210 012345667777777777643 11100000123566666


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc----ceeecCCCCceeEEEeEE
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV----SYAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~----~~~~~~~p~L~~l~l~~~  281 (314)
                      +++  ++.....  .....-..++|++|++++....    ...+..++.|+++++...
T Consensus       130 ~Ls--~N~l~~l--~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          130 VAV--ETNLASL--ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             ECT--TSCCCCS--TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred             ECC--CCcCCCC--ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCc
Confidence            664  2221111  1111225688999998886543    233567888888888654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.74  E-value=4.8e-06  Score=79.42  Aligned_cols=131  Identities=20%  Similarity=0.134  Sum_probs=88.6

Q ss_pred             CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      ..+++|+|+....  ..++. .+..+++|++|+|+++.....++ .+..+++|++|+|.+..++.- -...+.++++|++
T Consensus        52 ~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCE
Confidence            4789999987653  24443 45678999999999987666653 356799999999999876331 1345788999999


Q ss_pred             eeeeeeeccCCCCCcEEE-ecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644          202 LSLTVYFTAANPASNLII-SSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       202 L~L~~c~~~~~~~~~~~i-~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~  262 (314)
                      |+|.++.. ..+ ....+ ..++|+.|+++  ++ ...........-..++|++|++++...
T Consensus       129 L~Ls~N~l-~~l-~~~~~~~L~~L~~L~Ls--~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          129 LVAVETNL-ASL-ENFPIGHLKTLKELNVA--HN-LIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             EECTTSCC-CCS-TTCCCTTCTTCCEEECC--SS-CCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcC-CCC-ChhhhhcCcccCeeccc--cC-ccccCCCchhhccchhhhhhcccCccc
Confidence            99999865 444 22222 45789999986  23 222111112223568899999988654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.71  E-value=1.9e-06  Score=71.44  Aligned_cols=144  Identities=17%  Similarity=0.152  Sum_probs=75.8

Q ss_pred             eEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC--CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          127 REIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP--DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       127 ~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      +.++++...  ...+|..+  .+.++.|.|+++.+...++  ....+++|+.|+|.+..++.- ....+..++.|++|+|
T Consensus        14 ~~l~~s~n~--l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~L   88 (220)
T 2v70_A           14 TTVDCSNQK--LNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEGASGVNEILL   88 (220)
T ss_dssp             TEEECCSSC--CSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred             CEeEeCCCC--cccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCCCCCCCEEEC
Confidence            344444332  22345433  3456788888876655531  245788888888888776321 1224567888888888


Q ss_pred             eeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeE
Q 047644          205 TVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYV  280 (314)
Q Consensus       205 ~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~  280 (314)
                      .++.. ..+.....-..++|+.|+++  ++ ......+. .....++|++|++++.....   ..+..+++|+.+++..
T Consensus        89 s~N~l-~~~~~~~~~~l~~L~~L~Ls--~N-~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  162 (220)
T 2v70_A           89 TSNRL-ENVQHKMFKGLESLKTLMLR--SN-RITCVGND-SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLA  162 (220)
T ss_dssp             CSSCC-CCCCGGGGTTCSSCCEEECT--TS-CCCCBCTT-SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCCcc-CccCHhHhcCCcCCCEEECC--CC-cCCeECHh-HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecC
Confidence            88765 33201111134567777765  12 11111000 11134666666666554331   2244555566555544

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.66  E-value=1.6e-05  Score=72.45  Aligned_cols=38  Identities=26%  Similarity=0.369  Sum_probs=35.8

Q ss_pred             CCcccCCCChHHHHHHhcCCChhhhhhhhccccccccc
Q 047644           17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHA   54 (314)
Q Consensus        17 ~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l   54 (314)
                      ..|.++.||+|++.+||+||+.+|+++++.|||+|+.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~   52 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRIL   52 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhh
Confidence            46899999999999999999999999999999999864

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.65  E-value=1.6e-05  Score=65.73  Aligned_cols=133  Identities=10%  Similarity=0.062  Sum_probs=84.8

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      ..+++|+++.+......-+..+..+++|+.|.|+++.....++ ....+++|+.|+|.+..++.- ....+..++.|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCEE
Confidence            3567777776653332222335567899999999886666553 466889999999999887432 24456789999999


Q ss_pred             eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644          203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~  262 (314)
                      +|+++.. ..+.....-..++|+.|+++  ++ ......+ ...-..++|++|++++...
T Consensus       111 ~Ls~N~l-~~~~~~~~~~l~~L~~L~L~--~N-~l~~~~~-~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A          111 MLRSNRI-TCVGNDSFIGLSSVRLLSLY--DN-QITTVAP-GAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             ECTTSCC-CCBCTTSSTTCTTCSEEECT--TS-CCCCBCT-TTTTTCTTCCEEECCSCCE
T ss_pred             ECCCCcC-CeECHhHcCCCccCCEEECC--CC-cCCEECH-HHhcCCCCCCEEEecCcCC
Confidence            9998865 32200111145788999886  22 2221111 1112568999999988654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.61  E-value=9.3e-05  Score=65.56  Aligned_cols=179  Identities=12%  Similarity=0.032  Sum_probs=91.0

Q ss_pred             CCceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeecc-cCC-CCcCCCCcceEEeeeE-EcCCCcHHHHhcCCccc
Q 047644          124 RNVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALT-LPP-DGVCFPRLKTFHLMLQ-QPTNHLPHNLFSRCPCL  199 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~-~~~-~~~~~~~L~~L~L~~~-~~~~~~l~~ll~~cp~L  199 (314)
                      .++++|+|+.+..  ..++.. +..+++|++|.|+++...+ .+. .+.++++|+++.+.+. .+.. -....+..++.|
T Consensus        30 ~~l~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~-l~~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY-INPEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEESCCC--SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCE-ECTTSBCCCTTC
T ss_pred             CCCCEEEccCCcC--CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccc-cCchhhhhcccc
Confidence            4788888887653  255554 4457899999998875433 331 3346677766544443 2211 012346788899


Q ss_pred             cceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccceee--cCCCCceeEE
Q 047644          200 QHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSYAV--HQLPSLHKAV  277 (314)
Q Consensus       200 e~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~~~--~~~p~L~~l~  277 (314)
                      +.|.+.++.. ............++..|.+.  .+.....-....+.-....++.|.+++.....+.-  ...+.|+++.
T Consensus       107 ~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~--~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~  183 (350)
T 4ay9_X          107 QYLLISNTGI-KHLPDVHKIHSLQKVLLDIQ--DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN  183 (350)
T ss_dssp             CEEEEEEECC-SSCCCCTTCCBSSCEEEEEE--SCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred             cccccccccc-ccCCchhhcccchhhhhhhc--cccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence            9999988865 32211112344556666664  23221110000111112456777777654432211  1223444444


Q ss_pred             EeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          278 YYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       278 l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      +...-..     ...-...++++++++.|.|+.|.|
T Consensus       184 l~~~n~l-----~~i~~~~f~~l~~L~~LdLs~N~l  214 (350)
T 4ay9_X          184 LSDNNNL-----EELPNDVFHGASGPVILDISRTRI  214 (350)
T ss_dssp             CTTCTTC-----CCCCTTTTTTEECCSEEECTTSCC
T ss_pred             hccCCcc-----cCCCHHHhccCcccchhhcCCCCc
Confidence            4211000     111123456777777777777765

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.60  E-value=9.6e-06  Score=73.81  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=35.4

Q ss_pred             CCcccCCCChH----HHHHHhcCCChhhhhhhhccccccccc
Q 047644           17 SEDRISCLPDS----ILCQILSVPPTKDAVATSILSPRWKHA   54 (314)
Q Consensus        17 ~~d~~~~LPd~----ll~~Ils~L~~~d~~~~~~vskrWr~l   54 (314)
                      ..|.++.||+|    ++.+||+||++++++++++|||+|+++
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~   48 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            36899999999    999999999999999999999999954

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.58  E-value=2.3e-05  Score=65.22  Aligned_cols=131  Identities=17%  Similarity=0.087  Sum_probs=85.3

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|+|+.+.... ..+..+..+++|+.|.|+++.+...+. ....+++|+.|+|.+..++.- ....+..++.|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITK-LEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCc-cCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence            578888887765332 223445667899999999887666653 346789999999998877432 23456788999999


Q ss_pred             eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644          203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~  262 (314)
                      +|.++.. ..++..+ -..++|+.|+++  +. ..... .....-..++|++|.+.+...
T Consensus       118 ~Ls~N~l-~~lp~~~-~~l~~L~~L~L~--~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          118 FMCCNKL-TELPRGI-ERLTHLTHLALD--QN-QLKSI-PHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             ECCSSCC-CSCCTTG-GGCTTCSEEECC--SS-CCCCC-CTTTTTTCTTCCEEECTTSCB
T ss_pred             eccCCcc-cccCccc-ccCCCCCEEECC--CC-cCCcc-CHHHHhCCCCCCEEEeeCCCc
Confidence            9998865 3331111 245788888886  22 22211 111122468999999988654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.58  E-value=8.2e-08  Score=86.29  Aligned_cols=156  Identities=13%  Similarity=0.065  Sum_probs=87.8

Q ss_pred             HHhCCceEEEEEecCCCcc---ccCCccc-ccCCeeEEEEcceeeccc--CCCCcCCCCcceEEeeeEEcCCCcHHHH--
Q 047644          121 AISRNVREIEIDLRDHERI---PLPASIY-RSITLEVLRLRSYFALTL--PPDGVCFPRLKTFHLMLQQPTNHLPHNL--  192 (314)
Q Consensus       121 ~~~~~l~~L~l~~~~~~~~---~l~~~~~-~c~~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l~~l--  192 (314)
                      .+...+++|+++.+.....   .+...+. .+++|++|+|+++...+.  ......+++|+.|+|.++.+++.+...+  
T Consensus        69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            3456899999987653321   2222222 247999999998855331  1133456789999999998866554443  


Q ss_pred             -h-cCCccccceeeeeeeccCCCCCcEE-----EecCCcceEEEEeeeeCCCCCCCcceE---EEEcCCccEEEeecccc
Q 047644          193 -F-SRCPCLQHLSLTVYFTAANPASNLI-----ISSATLKTFVLEVMYCSHSSAPNQHTV---TIVAPNLEFLDITDDLA  262 (314)
Q Consensus       193 -l-~~cp~Le~L~L~~c~~~~~~~~~~~-----i~~~~Lk~L~i~~~~c~~~~~~~~~~l---~~~~p~L~~L~l~~~~~  262 (314)
                       + ..++.|++|+|++|.. ++. ....     -..++|+.|+++  +| ...+.+...+   .-..++|++|+++++..
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l-~~~-~~~~l~~~L~~~~~L~~L~Ls--~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i  223 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPL-TAA-GVAVLMEGLAGNTSVTHLSLL--HT-GLGDEGLELLAAQLDRNRQLQELNVAYNGA  223 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCC-HHH-HHHHHHHHHHTCSSCCEEECT--TS-SCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred             HHHhcCCccceeeCCCCCC-ChH-HHHHHHHHHhcCCCcCEEeCC--CC-CCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence             3 4688999999999864 221 1111     135678888775  22 2211111110   11345677777766543


Q ss_pred             cc-------eeecCCCCceeEEEeEE
Q 047644          263 VS-------YAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       263 ~~-------~~~~~~p~L~~l~l~~~  281 (314)
                      ..       ..+...+.|+.++++.+
T Consensus       224 ~~~g~~~l~~~L~~~~~L~~L~Ls~N  249 (372)
T 3un9_A          224 GDTAALALARAAREHPSLELLHLYFN  249 (372)
T ss_dssp             CHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred             CHHHHHHHHHHHHhCCCCCEEeccCC
Confidence            31       11223456666666543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.57  E-value=2.9e-05  Score=69.19  Aligned_cols=153  Identities=15%  Similarity=0.106  Sum_probs=88.6

Q ss_pred             CCeeEEEEcceeecccCCC-Cc-CCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644          149 ITLEVLRLRSYFALTLPPD-GV-CFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT  226 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~-~~-~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~  226 (314)
                      +.++.|.|+++.+...+.. .. .+++|+.|+|.+..++.- ....+..++.|++|+|+++.. ..+.....-..++|+.
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~  116 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYLDLSSNHL-HTLDEFLFSDLQALEV  116 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCTTCCE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccCCCCCCEEECCCCcC-CcCCHHHhCCCcCCCE
Confidence            4577888888766555432 23 778888888887766321 122456778888888888754 2110000113467777


Q ss_pred             EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---ee---cCCCCceeEEEeEEeccCCCCCCCChHHHhhcC
Q 047644          227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AV---HQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGM  300 (314)
Q Consensus       227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~---~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~  300 (314)
                      |+++  ++.. .... ....-..++|++|++++.....+   .+   ..+++|+.+++.....      .......+..+
T Consensus       117 L~L~--~N~i-~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l------~~l~~~~~~~l  186 (361)
T 2xot_A          117 LLLY--NNHI-VVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL------KKLPLTDLQKL  186 (361)
T ss_dssp             EECC--SSCC-CEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC------CCCCHHHHHHS
T ss_pred             EECC--CCcc-cEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC------CccCHHHhhhc
Confidence            7775  2211 1000 00112468999999998765422   12   4688999888875422      11233456667


Q ss_pred             CCc--eEEEeecCCC
Q 047644          301 TKT--KCLTLSAGVL  313 (314)
Q Consensus       301 ~~l--~~L~l~~~~l  313 (314)
                      +++  +.|.|++|.+
T Consensus       187 ~~~~l~~l~l~~N~~  201 (361)
T 2xot_A          187 PAWVKNGLYLHNNPL  201 (361)
T ss_dssp             CHHHHTTEECCSSCE
T ss_pred             cHhhcceEEecCCCc
Confidence            763  7889988876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.55  E-value=0.00013  Score=67.03  Aligned_cols=34  Identities=21%  Similarity=0.111  Sum_probs=15.4

Q ss_pred             CeeEEEEcceeecccCCCCcCCCCcceEEeeeEEc
Q 047644          150 TLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQP  184 (314)
Q Consensus       150 ~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~  184 (314)
                      +|+.|.++++.....| ....+++|+.|+|.+..+
T Consensus       216 ~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l  249 (454)
T 1jl5_A          216 SLESIVAGNNILEELP-ELQNLPFLTTIYADNNLL  249 (454)
T ss_dssp             TCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred             cccEEECcCCcCCccc-ccCCCCCCCEEECCCCcC
Confidence            4555555544333333 233444455555444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.54  E-value=1.3e-05  Score=71.38  Aligned_cols=150  Identities=18%  Similarity=0.133  Sum_probs=93.2

Q ss_pred             CCceEEEEEecCCCccccCCccc--ccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccc
Q 047644          124 RNVREIEIDLRDHERIPLPASIY--RSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQ  200 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~--~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  200 (314)
                      ..+++|+|+.+...  .++...+  .+++|+.|.|+++.+...++ ....+++|+.|+|.+..++.- ....+..++.|+
T Consensus        39 ~~l~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLS--RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCC--EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCC
T ss_pred             CCCCEEECCCCCCC--ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCC
Confidence            45788888776432  3343333  67999999999987666552 467899999999999877321 233567889999


Q ss_pred             ceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceE--EEEcCCccEEEeecccccce---eecCCCCc--
Q 047644          201 HLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTV--TIVAPNLEFLDITDDLAVSY---AVHQLPSL--  273 (314)
Q Consensus       201 ~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l--~~~~p~L~~L~l~~~~~~~~---~~~~~p~L--  273 (314)
                      .|+|.++.. ..+.....-..++|+.|+++  ++ .........+  ....++|+.|++++.....+   .+..++.+  
T Consensus       116 ~L~L~~N~i-~~~~~~~~~~l~~L~~L~L~--~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l  191 (361)
T 2xot_A          116 VLLLYNNHI-VVVDRNAFEDMAQLQKLYLS--QN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK  191 (361)
T ss_dssp             EEECCSSCC-CEECTTTTTTCTTCCEEECC--SS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred             EEECCCCcc-cEECHHHhCCcccCCEEECC--CC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence            999999864 21100001134789999987  22 2222111111  14689999999998765422   23445553  


Q ss_pred             eeEEEeE
Q 047644          274 HKAVYYV  280 (314)
Q Consensus       274 ~~l~l~~  280 (314)
                      +.+++..
T Consensus       192 ~~l~l~~  198 (361)
T 2xot_A          192 NGLYLHN  198 (361)
T ss_dssp             TTEECCS
T ss_pred             ceEEecC
Confidence            5566554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.47  E-value=3e-05  Score=64.09  Aligned_cols=131  Identities=15%  Similarity=0.104  Sum_probs=76.3

Q ss_pred             CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeeccc-CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTL-PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      .++++|++..+...  .++. .+..+++|+.|.|+++..... |.....+++|+.|+|.+..++.- -..++.+++.|+.
T Consensus        32 ~~l~~L~l~~n~i~--~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIK--VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCC--EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCC--CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence            36777777665422  2333 344567888888888755544 23556778888888888776421 2334567788888


Q ss_pred             eeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644          202 LSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~  262 (314)
                      |+|.++.. ..+.....-..++|+.|+++  ++ ..... .....-..++|++|++.+...
T Consensus       109 L~L~~N~l-~~~~~~~~~~l~~L~~L~L~--~N-~l~~~-~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          109 LLLNANKI-NCLRVDAFQDLHNLNLLSLY--DN-KLQTI-AKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCC-CCCCTTTTTTCTTCCEEECC--SS-CCSCC-CTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCCC-CEeCHHHcCCCCCCCEEECC--CC-cCCEE-CHHHHhCCCCCCEEEeCCCCc
Confidence            88888755 32200111134678888876  22 21111 111112367888888887653

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.30  E-value=6.6e-05  Score=59.52  Aligned_cols=32  Identities=22%  Similarity=0.174  Sum_probs=17.5

Q ss_pred             cCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644          249 APNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV  280 (314)
Q Consensus       249 ~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~  280 (314)
                      .++|++|++++.....+   .+..++.|+.+++..
T Consensus        99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CcccCEEECcCCcceEeCHHHhcCCcccCEEEecC
Confidence            46677777766543311   234456666666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.30  E-value=3.5e-05  Score=61.17  Aligned_cols=129  Identities=15%  Similarity=0.072  Sum_probs=74.1

Q ss_pred             CceEEEEEecCCCccccCCccccc-CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRS-ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c-~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      ++++|+++.+...  .++. +..+ ++|+.|.|+++...+.+ ....+++|+.|+|.+..++.- ...++..+|.|+.|+
T Consensus        20 ~L~~L~l~~n~l~--~i~~-~~~~~~~L~~L~Ls~N~l~~~~-~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           20 RDRELDLRGYKIP--VIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELI   94 (176)
T ss_dssp             SCEEEECTTSCCC--SCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEE
T ss_pred             CceEEEeeCCCCc--hhHH-hhhcCCCCCEEECCCCCCCccc-ccccCCCCCEEECCCCccccc-CcchhhcCCCCCEEE
Confidence            5677777665433  2332 3344 47888888777555543 666778888888877776321 123345678888888


Q ss_pred             eeeeeccCCCCCc--EEEecCCcceEEEEeeeeCCCCCCCc-ceEEEEcCCccEEEeecccc
Q 047644          204 LTVYFTAANPASN--LIISSATLKTFVLEVMYCSHSSAPNQ-HTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       204 L~~c~~~~~~~~~--~~i~~~~Lk~L~i~~~~c~~~~~~~~-~~l~~~~p~L~~L~l~~~~~  262 (314)
                      ++++.. .++ ..  .--..++|+.|+++  ++........ ..+....|+|++|++++...
T Consensus        95 L~~N~i-~~~-~~~~~l~~l~~L~~L~l~--~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           95 LTNNSL-VEL-GDLDPLASLKSLTYLCIL--RNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSCCC-CCG-GGGGGGGGCTTCCEEECC--SSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCcC-Ccc-hhhHhhhcCCCCCEEEec--CCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            887755 333 21  11145677777775  2322111100 01234678899998887654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.29  E-value=3.2e-05  Score=62.42  Aligned_cols=102  Identities=19%  Similarity=0.114  Sum_probs=52.6

Q ss_pred             CeeEEEEcceeecccCCC--CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          150 TLEVLRLRSYFALTLPPD--GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       150 ~L~~L~L~~~~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      +|+.|.++++.+...++.  ...+++|+.|+|.+..++.- ....+.+.+.|++|+|+++.. .    .+          
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l-~----~~----------   93 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-K----EI----------   93 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-C----EE----------
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCcC-C----cc----------
Confidence            566666666544444321  34556666666665555221 122344555666666555532 1    00          


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeEE
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~  281 (314)
                                    .....-..++|++|++++.....   ..+..+++|+.+++...
T Consensus        94 --------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  136 (192)
T 1w8a_A           94 --------------SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             --------------CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             --------------CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence                          00000135778888888765442   23556777777777554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.20  E-value=6.4e-05  Score=71.17  Aligned_cols=79  Identities=20%  Similarity=0.163  Sum_probs=48.6

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      .++.|+++.+...  .+|. +..+++|+.|.|+++.+...|.....+++|+.|+|.+..++.  +. -+..++.|+.|+|
T Consensus       442 ~L~~L~Ls~n~l~--~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLT--VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCS--SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCC--CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence            5666666655332  2444 556677777777776555555455567777777777766643  33 4566777777777


Q ss_pred             eeeec
Q 047644          205 TVYFT  209 (314)
Q Consensus       205 ~~c~~  209 (314)
                      +++..
T Consensus       516 s~N~l  520 (567)
T 1dce_A          516 CNNRL  520 (567)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            76644

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.13  E-value=0.00018  Score=56.97  Aligned_cols=108  Identities=16%  Similarity=0.081  Sum_probs=53.7

Q ss_pred             CCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          149 ITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      ++|+.|.++++.....++ ....+++|+.|+|.+..++.- ....+..++.|+.|++.++.. ........-..++|+.|
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKL-QSLPNGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCc-cccCHHHhhCCcccCEE
Confidence            466666666665444432 234566677777766655321 123345666777777766644 22201001123566666


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~  262 (314)
                      +++  ++ ..... +....-..++|++|++++...
T Consensus       106 ~l~--~N-~l~~~-~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A          106 ALD--TN-QLKSV-PDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             ECC--SS-CCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred             ECc--CC-cceEe-CHHHhcCCcccCEEEecCCCe
Confidence            665  22 11111 111112357778887777643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.08  E-value=0.00011  Score=59.41  Aligned_cols=33  Identities=15%  Similarity=0.127  Sum_probs=18.7

Q ss_pred             EcCCccEEEeecccccce---eecCCCCceeEEEeE
Q 047644          248 VAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYV  280 (314)
Q Consensus       248 ~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~  280 (314)
                      ..++|++|++++.....+   .+..+++|+.+++..
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  135 (193)
T 2wfh_A          100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGA  135 (193)
T ss_dssp             TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred             CCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCC
Confidence            346777777776544321   244566666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=96.92  E-value=0.00018  Score=57.93  Aligned_cols=85  Identities=15%  Similarity=0.080  Sum_probs=61.3

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeeccc-CCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTL-PPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|+++.+......-...+...++|++|.|+++.+... |.....+++|+.|+|.+..++.- ....+.+.+.|+.|
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc-CHHHhcCCCCCCEE
Confidence            37899998877533222112356789999999999876665 33567899999999999887331 12335678999999


Q ss_pred             eeeeeec
Q 047644          203 SLTVYFT  209 (314)
Q Consensus       203 ~L~~c~~  209 (314)
                      +|.++..
T Consensus       108 ~L~~N~l  114 (192)
T 1w8a_A          108 NLYDNQI  114 (192)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCcC
Confidence            9998854

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=96.91  E-value=0.00023  Score=57.44  Aligned_cols=59  Identities=17%  Similarity=0.106  Sum_probs=26.6

Q ss_pred             CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      ++|++|.|+++.+...|.....+++|+.|+|.+..++.- ....+.+++.|++|+|+++.
T Consensus        31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCc
Confidence            345555555544333332333455555555555544221 11223445555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.75  E-value=0.00025  Score=57.31  Aligned_cols=99  Identities=12%  Similarity=0.159  Sum_probs=74.0

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+....  +| .+..+++|+.|.++++.....|.....+++|+.|+|.+..++.  +. -+..++.|+.|+
T Consensus        48 ~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           48 KACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEE
T ss_pred             CCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEE
Confidence            589999998765333  45 6677899999999998777766444467999999999999855  44 366889999999


Q ss_pred             eeeeeccCCCCCcE--EEecCCcceEEEE
Q 047644          204 LTVYFTAANPASNL--IISSATLKTFVLE  230 (314)
Q Consensus       204 L~~c~~~~~~~~~~--~i~~~~Lk~L~i~  230 (314)
                      +.++.. .++ ..+  --..++|+.|+++
T Consensus       122 l~~N~i-~~~-~~~~~l~~l~~L~~L~l~  148 (198)
T 1ds9_A          122 MSNNKI-TNW-GEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             ESEEEC-CCH-HHHHHHTTTTTCSEEEEC
T ss_pred             CCCCcC-Cch-hHHHHHhcCCCCCEEEec
Confidence            999976 432 111  1145789999996

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.72  E-value=7.6e-06  Score=73.39  Aligned_cols=160  Identities=13%  Similarity=0.030  Sum_probs=95.8

Q ss_pred             CeeEEEEEeccCCCcchHHHHHHHHHh---CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCC-----
Q 047644           97 SVEKFSLRCSYLRSLGMFDYWVSSAIS---RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDG-----  168 (314)
Q Consensus        97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~---~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~-----  168 (314)
                      .++.+.+..+. ...... ..+..+..   .++++|+|+.+......+......+++|+.|+|+++...+.....     
T Consensus        73 ~L~~L~Ls~n~-l~~~~~-~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           73 SLRQLNLAGVR-MTPVKC-TVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             TCCEEECTTSC-CCHHHH-HHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             hCCEEEecCCC-CCHHHH-HHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            37777765443 222211 22333332   479999998775433222222233578999999998554321000     


Q ss_pred             -cCCCCcceEEeeeEEcCCCc---HHHHhcCCccccceeeeeeeccCCCCCcEE-----EecCCcceEEEEeeeeCCCCC
Q 047644          169 -VCFPRLKTFHLMLQQPTNHL---PHNLFSRCPCLQHLSLTVYFTAANPASNLI-----ISSATLKTFVLEVMYCSHSSA  239 (314)
Q Consensus       169 -~~~~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~-----i~~~~Lk~L~i~~~~c~~~~~  239 (314)
                       ...++|++|+|.++.+++.+   +...+..++.|++|+|++|.. .+. ....     -..++|+.|+++  +|. .++
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l-~~~-g~~~L~~~L~~~~~L~~L~Ls--~N~-i~~  225 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL-GDE-GLELLAAQLDRNRQLQELNVA--YNG-AGD  225 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSC-HHH-HHHHHHHHGGGCSCCCEEECC--SSC-CCH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCC-CcH-HHHHHHHHHhcCCCcCeEECC--CCC-CCH
Confidence             24688999999999885544   445567899999999999864 321 1111     134689999997  342 222


Q ss_pred             CCcceEE---EEcCCccEEEeeccccc
Q 047644          240 PNQHTVT---IVAPNLEFLDITDDLAV  263 (314)
Q Consensus       240 ~~~~~l~---~~~p~L~~L~l~~~~~~  263 (314)
                      .+...+.   ...|+|++|++++....
T Consensus       226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          226 TAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            2111111   14689999999988654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.55  E-value=0.00022  Score=69.61  Aligned_cols=111  Identities=16%  Similarity=0.040  Sum_probs=61.7

Q ss_pred             CcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecC
Q 047644          143 ASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSA  222 (314)
Q Consensus       143 ~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~  222 (314)
                      ..+..++.|+.|+|+++.+...|.....+++|+.|+|.+..++  .+..-+..++.|+.|+|+++.. ..+ ...--..+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l-~~l-p~~~~~l~  293 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRL-TSL-PAELGSCF  293 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCC-SSC-CSSGGGGT
T ss_pred             hhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcC-Ccc-ChhhcCCC
Confidence            3444567777777777765555544556777777777777664  2333456677777777777754 322 11111345


Q ss_pred             CcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644          223 TLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       223 ~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~  262 (314)
                      +|+.|+++  ++.. ..- +.. .-..++|++|++++...
T Consensus       294 ~L~~L~L~--~N~l-~~l-p~~-~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          294 QLKYFYFF--DNMV-TTL-PWE-FGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             TCSEEECC--SSCC-CCC-CSS-TTSCTTCCCEECTTSCC
T ss_pred             CCCEEECC--CCCC-Ccc-Chh-hhcCCCccEEeCCCCcc
Confidence            67777775  2221 111 111 22457777777776543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.51  E-value=0.0002  Score=69.79  Aligned_cols=101  Identities=14%  Similarity=0.094  Sum_probs=67.4

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      ..++.|+|+.+...  .++..++.+++|++|.|+++.+...|.....+++|+.|+|.+..++  .+..-+..++.|++|+
T Consensus       224 ~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEE
Confidence            46777877766532  5666777788888888888766666645567888888888888775  2333456778888888


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEE
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLE  230 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~  230 (314)
                      |.++.. ..++.. --..++|+.|+++
T Consensus       300 L~~N~l-~~lp~~-~~~l~~L~~L~L~  324 (727)
T 4b8c_D          300 FFDNMV-TTLPWE-FGNLCNLQFLGVE  324 (727)
T ss_dssp             CCSSCC-CCCCSS-TTSCTTCCCEECT
T ss_pred             CCCCCC-CccChh-hhcCCCccEEeCC
Confidence            888754 333111 1134677777775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.49  E-value=0.00044  Score=55.37  Aligned_cols=33  Identities=12%  Similarity=0.065  Sum_probs=14.2

Q ss_pred             CCcceEEeeeEEcCCCc---HHHHhcCCccccceee
Q 047644          172 PRLKTFHLMLQQPTNHL---PHNLFSRCPCLQHLSL  204 (314)
Q Consensus       172 ~~L~~L~L~~~~~~~~~---l~~ll~~cp~Le~L~L  204 (314)
                      ++|++|+|.+..+++.+   +...+..++.|++|+|
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRI  128 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEEC
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEe
Confidence            44444444444443332   2222334444555555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.43  E-value=0.0012  Score=62.31  Aligned_cols=83  Identities=19%  Similarity=0.205  Sum_probs=69.2

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+|+.+...  .+|..+..+++|+.|.|+++.+...| ....+++|+.|+|.+..++.-.....+..++.|+.|+
T Consensus       463 ~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          463 LLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             ccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            58999999887654  77888889999999999999777777 7788999999999999885432144567899999999


Q ss_pred             eeeeec
Q 047644          204 LTVYFT  209 (314)
Q Consensus       204 L~~c~~  209 (314)
                      |+++..
T Consensus       540 L~~N~l  545 (567)
T 1dce_A          540 LQGNSL  545 (567)
T ss_dssp             CTTSGG
T ss_pred             ecCCcC
Confidence            999865

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.24  E-value=0.00013  Score=58.54  Aligned_cols=84  Identities=15%  Similarity=0.100  Sum_probs=38.7

Q ss_pred             CceEEEEEecCCCc---cccCCcccccCCeeEEEEcceeeccc-----CCCCcCCCCcceEEe--eeEEcCCCc---HHH
Q 047644          125 NVREIEIDLRDHER---IPLPASIYRSITLEVLRLRSYFALTL-----PPDGVCFPRLKTFHL--MLQQPTNHL---PHN  191 (314)
Q Consensus       125 ~l~~L~l~~~~~~~---~~l~~~~~~c~~L~~L~L~~~~~~~~-----~~~~~~~~~L~~L~L--~~~~~~~~~---l~~  191 (314)
                      .+++|+|+.+....   ..+...+..+++|++|+|+++...+.     .......++|++|+|  .+..+++++   +..
T Consensus        66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~  145 (185)
T 1io0_A           66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN  145 (185)
T ss_dssp             SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred             CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence            45666555443211   12222233345566666655533221     012233455666666  445554433   344


Q ss_pred             HhcCCccccceeeeeee
Q 047644          192 LFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       192 ll~~cp~Le~L~L~~c~  208 (314)
                      .+..++.|++|+|.+|.
T Consensus       146 ~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          146 MLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             HHHHCSSCCEEECCCSS
T ss_pred             HHHhCCCcCEEeccCCC
Confidence            44455566666665553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.02  E-value=0.0052  Score=48.44  Aligned_cols=59  Identities=17%  Similarity=0.100  Sum_probs=26.2

Q ss_pred             CCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          149 ITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      ++|+.|.|+++.+...+ .....+++|+.|+|.+..++.- -..++..++.|+.|+|.++.
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCc
Confidence            45555555554443332 1233455555555555544221 11223444555555555543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.02  E-value=0.019  Score=50.44  Aligned_cols=159  Identities=13%  Similarity=0.059  Sum_probs=87.9

Q ss_pred             cccCCcccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcE
Q 047644          139 IPLPASIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNL  217 (314)
Q Consensus       139 ~~l~~~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~  217 (314)
                      .++|..+  .+++++|.|+++.....|+. +.++++|++|+|.+..+...--...+.+++.|.++.+..+.....+....
T Consensus        22 t~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~   99 (350)
T 4ay9_X           22 TEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA   99 (350)
T ss_dssp             CSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS
T ss_pred             CccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh
Confidence            3556544  36899999999877676643 56899999999998865221112346678888877766664311110011


Q ss_pred             EEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-ce---eecCC-CCceeEEEeEEeccCCCCCCCC
Q 047644          218 IISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-SY---AVHQL-PSLHKAVYYVMFSEWPPIDRRP  292 (314)
Q Consensus       218 ~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-~~---~~~~~-p~L~~l~l~~~~~~~~~~~~~~  292 (314)
                      .-..++|+.|+++  ++.....  .........++..|.+.+.... .+   .+..+ ..++.++++.....       .
T Consensus       100 f~~l~~L~~L~l~--~n~l~~~--~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-------~  168 (350)
T 4ay9_X          100 FQNLPNLQYLLIS--NTGIKHL--PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-------E  168 (350)
T ss_dssp             BCCCTTCCEEEEE--EECCSSC--CCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-------E
T ss_pred             hhhcccccccccc--ccccccC--Cchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-------C
Confidence            1245789999997  3432111  1112235667778888765332 11   22333 34666666543111       0


Q ss_pred             hHHHhhcCCCceEEEeec
Q 047644          293 PVQLLAGMTKTKCLTLSA  310 (314)
Q Consensus       293 ~~~ll~~~~~l~~L~l~~  310 (314)
                      +..-.-..+++++|.+..
T Consensus       169 i~~~~f~~~~L~~l~l~~  186 (350)
T 4ay9_X          169 IHNSAFNGTQLDELNLSD  186 (350)
T ss_dssp             ECTTSSTTEEEEEEECTT
T ss_pred             CChhhccccchhHHhhcc
Confidence            111112345778887764

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.96  E-value=0.0045  Score=48.53  Aligned_cols=60  Identities=25%  Similarity=0.134  Sum_probs=33.8

Q ss_pred             CCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          149 ITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      ++|+.|.|+++.+...+ .....+++|+.|+|.+..++.- ....+..++.|+.|+|.++..
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCcc
Confidence            56666666666554443 2344566667776666665321 123345666666666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.78  E-value=0.0004  Score=60.81  Aligned_cols=34  Identities=18%  Similarity=0.032  Sum_probs=21.8

Q ss_pred             cCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeE
Q 047644          148 SITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQ  182 (314)
Q Consensus       148 c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~  182 (314)
                      |++|+.|.|.. .....+. .+.+|++|+.|.|.+.
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKK  134 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCS
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCC
Confidence            78888888876 3333332 4557788888888654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.68  E-value=0.0069  Score=47.69  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=24.3

Q ss_pred             ccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644          147 RSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c  207 (314)
                      ..++|+.|.|+++.+...|.. ...+++|+.|+|.+..+..- ....+..++.|+.|.|.+.
T Consensus        55 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           55 HLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS
T ss_pred             CCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee-CHHHhccccCCCEEEeCCC
Confidence            344444444444433333321 23444444444444443210 1122334444444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.65  E-value=0.0088  Score=46.83  Aligned_cols=83  Identities=19%  Similarity=0.131  Sum_probs=59.5

Q ss_pred             CCceEEEEEecCCCcccc-CCcccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          124 RNVREIEIDLRDHERIPL-PASIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l-~~~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      ..+++|+|+.+...  .+ +..+...++|+.|.|+++.+...++. ...+++|+.|+|.+..+..- ....+..++.|+.
T Consensus        30 ~~l~~L~L~~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLYLYDNQIT--KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI-PRGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCcCC--ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe-CHHHhcCCCCCCE
Confidence            47788888766432  23 34455678999999999877666543 46889999999998887431 1234678899999


Q ss_pred             eeeeeeec
Q 047644          202 LSLTVYFT  209 (314)
Q Consensus       202 L~L~~c~~  209 (314)
                      |.|.+..+
T Consensus       107 L~L~~N~~  114 (170)
T 3g39_A          107 IWLLNNPW  114 (170)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCC
Confidence            99988755

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=95.64  E-value=0.0057  Score=53.33  Aligned_cols=100  Identities=12%  Similarity=0.082  Sum_probs=50.6

Q ss_pred             eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcC-------
Q 047644           98 VEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVC-------  170 (314)
Q Consensus        98 l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~-------  170 (314)
                      |+.+.+....  ....+ .++... ..+++.|+|+.+....+.......  +.+..+.+......+.  .+.+       
T Consensus        27 l~~L~l~g~i--~~~~~-~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~--~~~~~~~~~~~~I~~~--aF~~~~~~~~~   98 (329)
T 3sb4_A           27 ITHLTLTGKL--NAEDF-RHLRDE-FPSLKVLDISNAEIKMYSGKAGTY--PNGKFYIYMANFVPAY--AFSNVVNGVTK   98 (329)
T ss_dssp             CSEEEEEEEE--CHHHH-HHHHHS-CTTCCEEEEEEEEECCEEESSSSS--GGGCCEEECTTEECTT--TTEEEETTEEE
T ss_pred             eeEEEEeccc--cHHHH-HHHHHh-hccCeEEecCcceeEEecCccccc--cccccccccccccCHH--Hhccccccccc
Confidence            6777776432  11111 222221 357888888766433222222111  1122233322222111  3445       


Q ss_pred             -CCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeee
Q 047644          171 -FPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       171 -~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c  207 (314)
                       +++|+.|.|.+ .+..- -...+.+|++|++|.+...
T Consensus        99 g~~~L~~l~L~~-~i~~I-~~~aF~~~~~L~~l~l~~n  134 (329)
T 3sb4_A           99 GKQTLEKVILSE-KIKNI-EDAAFKGCDNLKICQIRKK  134 (329)
T ss_dssp             ECTTCCC-CBCT-TCCEE-CTTTTTTCTTCCEEEBCCS
T ss_pred             ccCCCcEEECCc-cccch-hHHHhhcCcccceEEcCCC
Confidence             89999999987 44110 0234679999999999765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=95.03  E-value=0.0026  Score=57.41  Aligned_cols=75  Identities=16%  Similarity=0.203  Sum_probs=42.3

Q ss_pred             CceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeE--EcCCCcHHHHhcCCccccc
Q 047644          125 NVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQ--QPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~--~~~~~~l~~ll~~cp~Le~  201 (314)
                      +++++.+..   ....+.. ....|++|+.+.|........+.....+.+|+.+.|..-  .+++    ..+.+|+.|+.
T Consensus       158 ~L~~i~lp~---~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~----~aF~~~~~L~~  230 (401)
T 4fdw_A          158 TVQEIVFPS---TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGS----QAFLKTSQLKT  230 (401)
T ss_dssp             CCCEEECCT---TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECT----TTTTTCTTCCC
T ss_pred             CceEEEeCC---CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehh----hHhhCCCCCCE
Confidence            456555542   1122332 334578888888876544444434445677777777432  1122    24668888888


Q ss_pred             eeeee
Q 047644          202 LSLTV  206 (314)
Q Consensus       202 L~L~~  206 (314)
                      +.+..
T Consensus       231 l~l~~  235 (401)
T 4fdw_A          231 IEIPE  235 (401)
T ss_dssp             EECCT
T ss_pred             EecCC
Confidence            88754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.47  E-value=0.015  Score=50.96  Aligned_cols=66  Identities=17%  Similarity=0.145  Sum_probs=28.7

Q ss_pred             cCCcccccCCeeEEEEcc-eeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          141 LPASIYRSITLEVLRLRS-YFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       141 l~~~~~~c~~L~~L~L~~-~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      +|. +...++|+.|.|++ ..+...++ ....+++|+.|+|.+..++. -....+.+++.|+.|+|++..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEECCSSC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEeCCCCc
Confidence            444 44445555555543 33333321 23345555555555544421 012233445555555555543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.04  E-value=0.071  Score=47.88  Aligned_cols=53  Identities=19%  Similarity=0.196  Sum_probs=28.3

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLM  180 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~  180 (314)
                      +++.++|....  ...++...+.|.+|+.+.|... ....+ ..+.++++|+.+.|.
T Consensus       181 ~L~~l~l~~n~--l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          181 NLKKADLSKTK--ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP  234 (401)
T ss_dssp             TCCEEECTTSC--CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred             cCCeeecCCCc--ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence            57777764322  2344555555677777776543 21111 134456666666664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=93.02  E-value=0.05  Score=47.52  Aligned_cols=81  Identities=19%  Similarity=0.101  Sum_probs=41.7

Q ss_pred             CceEEEEEe-cCCCccccC-CcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          125 NVREIEIDL-RDHERIPLP-ASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       125 ~l~~L~l~~-~~~~~~~l~-~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      ++++|+|+. +..  ..++ ..+..+++|+.|.|+++.+...++ .+..+++|+.|+|.+..++.- ...++...+ |+.
T Consensus        32 ~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~-L~~  107 (347)
T 2ifg_A           32 NLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL-SWKTVQGLS-LQE  107 (347)
T ss_dssp             CCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCC-CSTTTCSCC-CCE
T ss_pred             CeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcccee-CHHHcccCC-ceE
Confidence            466666653 321  1223 234456677777777665544442 235667777777766665221 112223333 666


Q ss_pred             eeeeeeec
Q 047644          202 LSLTVYFT  209 (314)
Q Consensus       202 L~L~~c~~  209 (314)
                      |.|.+...
T Consensus       108 l~l~~N~~  115 (347)
T 2ifg_A          108 LVLSGNPL  115 (347)
T ss_dssp             EECCSSCC
T ss_pred             EEeeCCCc
Confidence            66665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=92.75  E-value=0.016  Score=49.00  Aligned_cols=81  Identities=12%  Similarity=0.103  Sum_probs=50.5

Q ss_pred             CCceEEEEEecCCCcc-ccCCcccccCCeeEEEEcceeecccCCCCcCCC--CcceEEeeeEEcCC------CcHHHHhc
Q 047644          124 RNVREIEIDLRDHERI-PLPASIYRSITLEVLRLRSYFALTLPPDGVCFP--RLKTFHLMLQQPTN------HLPHNLFS  194 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~-~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~--~L~~L~L~~~~~~~------~~l~~ll~  194 (314)
                      ..++.|+|+.+..... .++..+..+++|+.|+|+++.+.+.. ....+.  +|++|.|.+..+..      .....++.
T Consensus       170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~  248 (267)
T 3rw6_A          170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE  248 (267)
T ss_dssp             TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence            4788888877654332 34445556788888888887554432 222233  78888887776632      23346777


Q ss_pred             CCccccceeee
Q 047644          195 RCPCLQHLSLT  205 (314)
Q Consensus       195 ~cp~Le~L~L~  205 (314)
                      .+|.|+.|+=.
T Consensus       249 ~~P~L~~LDg~  259 (267)
T 3rw6_A          249 RFPKLLRLDGH  259 (267)
T ss_dssp             HCTTCCEESSC
T ss_pred             HCcccCeECCc
Confidence            88888877633

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=86.22  E-value=0.16  Score=40.69  Aligned_cols=76  Identities=13%  Similarity=0.101  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHccCCCCCeeEEEEEeccCCCcchHHHHHHHHHh--CCceEEEEEecCCC---ccccCCcccccCCeeEEE
Q 047644           81 AFEKFVHSVLARTHPSSVEKFSLRCSYLRSLGMFDYWVSSAIS--RNVREIEIDLRDHE---RIPLPASIYRSITLEVLR  155 (314)
Q Consensus        81 ~~~~~v~~~l~~~~~~~l~~l~l~~~~~~~~~~~~~w~~~~~~--~~l~~L~l~~~~~~---~~~l~~~~~~c~~L~~L~  155 (314)
                      .+...+.+++...  ..++.+.|.......+..+. .+..+..  ..+++|+|..+...   ...+...+...++|+.|.
T Consensus        28 ~v~~~l~~ll~~n--~~L~~L~L~~nn~igd~ga~-~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           28 DVESCINRLREDD--TDLKEVNINNMKRVSKERIR-SLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN  104 (197)
T ss_dssp             CHHHHHHHHHTTC--SSCCEEECTTCCSSCHHHHH-HHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred             CHHHHHHHHHhcC--CCccEEECCCCCCCCHHHHH-HHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence            3444555555433  23666665432122222222 2333332  24566665544321   112222222335555555


Q ss_pred             Ecce
Q 047644          156 LRSY  159 (314)
Q Consensus       156 L~~~  159 (314)
                      |+.+
T Consensus       105 L~~N  108 (197)
T 1pgv_A          105 VESN  108 (197)
T ss_dssp             CCSS
T ss_pred             cCCC
Confidence            5554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.26  E-value=0.13  Score=41.18  Aligned_cols=98  Identities=10%  Similarity=-0.015  Sum_probs=58.9

Q ss_pred             CcchHHHHHHHHHhC--CceEEEEEec-CCC---ccccCCcccccCCeeEEEEcceeecccCC-----CCcCCCCcceEE
Q 047644          110 SLGMFDYWVSSAISR--NVREIEIDLR-DHE---RIPLPASIYRSITLEVLRLRSYFALTLPP-----DGVCFPRLKTFH  178 (314)
Q Consensus       110 ~~~~~~~w~~~~~~~--~l~~L~l~~~-~~~---~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-----~~~~~~~L~~L~  178 (314)
                      +...+...+..+...  .+++|+|+.. ...   ...+...+....+|+.|.|+++...+.-.     .......|++|+
T Consensus        25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~  104 (197)
T 1pgv_A           25 NDTDVESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLN  104 (197)
T ss_dssp             --CCHHHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred             CCCCHHHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEe
Confidence            445677788777653  5888888653 211   11233334445788888888875544310     112357788888


Q ss_pred             eeeEEcCCCcHHH---HhcCCccccceeeeee
Q 047644          179 LMLQQPTNHLPHN---LFSRCPCLQHLSLTVY  207 (314)
Q Consensus       179 L~~~~~~~~~l~~---ll~~cp~Le~L~L~~c  207 (314)
                      |.+..+++.+...   .+..-..|++|.|.++
T Consensus       105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            8888886554443   4445667888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=80.33  E-value=0.47  Score=39.98  Aligned_cols=38  Identities=18%  Similarity=0.210  Sum_probs=17.5

Q ss_pred             CCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeee
Q 047644          171 FPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       171 ~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      +|+|+.|+|.+..+ +-..+..++..+|+|+.|+|++..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~  207 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE  207 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc
Confidence            44555555555444 222333344445555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	2e-04
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-04

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 14/95 (14%)

Query: 19  DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSV----RNLCFDDELSVMGDEV 74
           D I+ LP  I  +I +    +D + +  +S  W           + L   +         
Sbjct: 4   DLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISE--------- 54

Query: 75  SGITVAAFEKFVHSVLARTHPSSVEKFSLRCSYLR 109
           + ++   F      +  +    S +   LR S+L 
Sbjct: 55  NFVSPKGFNSLNLKLSQKYPKLSQQD-RLRLSFLE 88

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 19 DRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTSVRNLCFDDEL 67
          D IS LP  +   +LS    KD +  +     W       R L  D+ L
Sbjct: 17 DFISLLPKELALYVLSFLEPKDLLQAAQTCRYW-------RILAEDNLL 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.28
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.83
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.8
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.74
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.55
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.51
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.5
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.44
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.43
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.32
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.22
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.16
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.13
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.07
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.02
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.98
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.8
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.8
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.71
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.62
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.56
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.53
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.33
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.18
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.09
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.03
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.89
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	96.84
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.48
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.23
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	96.07
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.53
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.28
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	94.98
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.86
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.7
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.64
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.13
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.32
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	89.58
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	89.41
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	84.73

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.6e-15  Score=127.55  Aligned_cols=84  Identities=18%  Similarity=0.148  Sum_probs=39.7

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeeccc-CCCCcCCCCcceEEeeeEEc-CCCcHHHHhcCCccccce
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTL-PPDGVCFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~-~~~~~~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L  202 (314)
                      ++++|+++.+......+...+..|++|++|.|++|...+. +.....+++|++|+|.+|.. ++.++..++.+||.|++|
T Consensus        47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L  126 (284)
T d2astb2          47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL  126 (284)
T ss_dssp             CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred             CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccc
Confidence            4555555444322222333334455555555555532211 11223455555555555432 555555555555555555


Q ss_pred             eeeeee
Q 047644          203 SLTVYF  208 (314)
Q Consensus       203 ~L~~c~  208 (314)
                      ++++|.
T Consensus       127 ~ls~c~  132 (284)
T d2astb2         127 NLSWCF  132 (284)
T ss_dssp             ECCCCT
T ss_pred             cccccc
Confidence            555553

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5e-12  Score=73.99  Aligned_cols=35  Identities=26%  Similarity=0.335  Sum_probs=33.0

Q ss_pred             cCCCChHHHHHHhcCCChhhhhhhhcccccccccc
Q 047644           21 ISCLPDSILCQILSVPPTKDAVATSILSPRWKHAW   55 (314)
Q Consensus        21 ~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~   55 (314)
                      ++.||+|++.+||+||+.+|+++++.|||+|+++.
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999864

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=1.7e-10  Score=81.84  Aligned_cols=40  Identities=23%  Similarity=0.323  Sum_probs=36.9

Q ss_pred             CcccCCCChHHHHHHhcCCChhhhhhhhcccccccccccc
Q 047644           18 EDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAWTS   57 (314)
Q Consensus        18 ~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~~~   57 (314)
                      .|.|+.||+||+.+||+||+++|++++++|||+|+++...
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~   42 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   42 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC
Confidence            5899999999999999999999999999999999976543

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=7.5e-10  Score=78.80  Aligned_cols=39  Identities=26%  Similarity=0.329  Sum_probs=36.6

Q ss_pred             CCcccCCCChHHHHHHhcCCChhhhhhhhcccccccccc
Q 047644           17 SEDRISCLPDSILCQILSVPPTKDAVATSILSPRWKHAW   55 (314)
Q Consensus        17 ~~d~~~~LPd~ll~~Ils~L~~~d~~~~~~vskrWr~l~   55 (314)
                      -.|.|+.||+||+.+||+||+++|+++++.|||+|+.+.
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~   53 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILA   53 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHH
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999999999999999999999764

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.6e-11  Score=100.55  Aligned_cols=157  Identities=15%  Similarity=0.128  Sum_probs=109.8

Q ss_pred             cccCCeeEEEEcceeecc--cCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCc--EEEec
Q 047644          146 YRSITLEVLRLRSYFALT--LPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASN--LIISS  221 (314)
Q Consensus       146 ~~c~~L~~L~L~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~--~~i~~  221 (314)
                      ....+|++|+|+++...+  .......+++|++|+|.++.+++..+..+ ..||+|++|++++|...++. ..  +.-.+
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd~-~l~~l~~~~  120 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSEF-ALQTLLSSC  120 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCHH-HHHHHHHHC
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHH-hcCCCCcCcccccccccccc-ccchhhHHH
Confidence            345799999999986533  22245679999999999998877766664 68999999999999763322 11  12257


Q ss_pred             CCcceEEEEeeeeCCCCCCCcce-EEEEcCCccEEEeeccccc------ceeecCCCCceeEEEeEEeccCCCCCCCChH
Q 047644          222 ATLKTFVLEVMYCSHSSAPNQHT-VTIVAPNLEFLDITDDLAV------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPV  294 (314)
Q Consensus       222 ~~Lk~L~i~~~~c~~~~~~~~~~-l~~~~p~L~~L~l~~~~~~------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~  294 (314)
                      ++|++|+++  +|...++.+... +...+|+|+.|.++|+...      .....++|+|+++++..+..-     ++...
T Consensus       121 ~~L~~L~ls--~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~i-----td~~~  193 (284)
T d2astb2         121 SRLDELNLS--WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML-----KNDCF  193 (284)
T ss_dssp             TTCCEEECC--CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC-----CGGGG
T ss_pred             Hhccccccc--cccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCC-----Cchhh
Confidence            999999998  786644332222 2234689999999986432      122356899999999654221     22344


Q ss_pred             HHhhcCCCceEEEeecC
Q 047644          295 QLLAGMTKTKCLTLSAG  311 (314)
Q Consensus       295 ~ll~~~~~l~~L~l~~~  311 (314)
                      ..+..+++++.|.|+.+
T Consensus       194 ~~l~~~~~L~~L~L~~C  210 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRC  210 (284)
T ss_dssp             GGGGGCTTCCEEECTTC
T ss_pred             hhhcccCcCCEEECCCC
Confidence            55678999999999874

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.55  E-value=3.5e-08  Score=78.72  Aligned_cols=159  Identities=13%  Similarity=0.073  Sum_probs=107.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|++..+....  + ..+..+++|++|.++++...+.+ ....+++|+.|.+.++.+..-  .. +.+++.|+.|.
T Consensus        40 ~~l~~L~l~~~~i~~--l-~~l~~l~nL~~L~Ls~N~l~~~~-~l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKS--I-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCCC--c-cccccCCCcCcCccccccccCcc-cccCCcccccccccccccccc--cc-ccccccccccc
Confidence            688999887765432  2 23567899999999998766665 567899999999998877332  22 67899999999


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEe
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMF  282 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~  282 (314)
                      +.+|.. ... ..+ -..++|+.|.++  .+ ....  ... .-..++|++|.+.+.....+ .+.++++|+++++..+.
T Consensus       113 l~~~~~-~~~-~~~-~~l~~L~~L~l~--~n-~l~~--~~~-l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         113 LFNNQI-TDI-DPL-KNLTNLNRLELS--SN-TISD--ISA-LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK  183 (199)
T ss_dssp             CCSSCC-CCC-GGG-TTCTTCSEEECC--SS-CCCC--CGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cccccc-ccc-ccc-chhhhhHHhhhh--hh-hhcc--ccc-ccccccccccccccccccCCccccCCCCCCEEECCCCC
Confidence            998865 332 111 134788888886  23 2211  111 12578899999988754433 36788999999887652


Q ss_pred             ccCCCCCCCChHHHhhcCCCceEE
Q 047644          283 SEWPPIDRRPPVQLLAGMTKTKCL  306 (314)
Q Consensus       283 ~~~~~~~~~~~~~ll~~~~~l~~L  306 (314)
                      ..       .+ ..+.++++++.|
T Consensus       184 i~-------~i-~~l~~L~~L~~L  199 (199)
T d2omxa2         184 VS-------DI-SVLAKLTNLESL  199 (199)
T ss_dssp             CC-------CC-GGGGGCTTCSEE
T ss_pred             CC-------CC-ccccCCCCCCcC
Confidence            21       12 136788888876

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.51  E-value=4e-08  Score=79.07  Aligned_cols=163  Identities=15%  Similarity=0.104  Sum_probs=113.5

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      ..+++|+++.+....  ++ .+..+++|++|.|+++...+.+ ....+++|+.|++.+..+++  +.. +..+|.|+.|.
T Consensus        46 ~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVKD--LSS-LKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCC--GGG-GTTCTTCCEEE
T ss_pred             cCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccccc--ccc-ccccccccccc
Confidence            478888887765332  22 3567899999999998666655 45689999999999988754  333 67899999999


Q ss_pred             eeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEe
Q 047644          204 LTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMF  282 (314)
Q Consensus       204 L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~  282 (314)
                      +.+|.. ..+ ..+ ...+.++.+.++   +......  . ..-..++|+++.+++.....+ .+.++++|+++++..+.
T Consensus       119 l~~~~~-~~~-~~l-~~l~~l~~l~~~---~n~l~~~--~-~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~  189 (210)
T d1h6ta2         119 LEHNGI-SDI-NGL-VHLPQLESLYLG---NNKITDI--T-VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNH  189 (210)
T ss_dssp             CTTSCC-CCC-GGG-GGCTTCCEEECC---SSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred             cccccc-ccc-ccc-cccccccccccc---ccccccc--c-cccccccccccccccccccccccccCCCCCCEEECCCCC
Confidence            999865 333 221 244678888775   3222221  1 122568999999998865533 36789999999987542


Q ss_pred             ccCCCCCCCChHHHhhcCCCceEEEeec
Q 047644          283 SEWPPIDRRPPVQLLAGMTKTKCLTLSA  310 (314)
Q Consensus       283 ~~~~~~~~~~~~~ll~~~~~l~~L~l~~  310 (314)
                      ..       .+. -+.++++++.|.|++
T Consensus       190 i~-------~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         190 IS-------DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CC-------BCG-GGTTCTTCSEEEEEE
T ss_pred             CC-------CCh-hhcCCCCCCEEEccC
Confidence            21       122 378999999999974

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=4.8e-08  Score=77.87  Aligned_cols=145  Identities=14%  Similarity=0.077  Sum_probs=81.0

Q ss_pred             cCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          148 SITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       148 c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      .+++++|.++++...+.. +...+++|++|+|.+..+++-  .. +.++|.|++|.+.++.. ..+ ..+ -..+.|+.|
T Consensus        39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~-~~~-~~l-~~l~~L~~L  111 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQI-ADI-TPL-ANLTNLTGL  111 (199)
T ss_dssp             HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCC-CCC-GGG-TTCTTCSEE
T ss_pred             hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCc--cc-ccCCccccccccccccc-ccc-ccc-ccccccccc
Confidence            456777777776555543 455677777777777766432  11 56777777777777654 332 211 134567777


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEE
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCL  306 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L  306 (314)
                      .++  +|......+    ....++|+.|.+++.....+ .+..+++|+.+++..+...       .+. -+.++++++.|
T Consensus       112 ~l~--~~~~~~~~~----~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~-------~l~-~l~~l~~L~~L  177 (199)
T d2omxa2         112 TLF--NNQITDIDP----LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT-------DLK-PLANLTTLERL  177 (199)
T ss_dssp             ECC--SSCCCCCGG----GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC-------CCG-GGTTCTTCCEE
T ss_pred             ccc--ccccccccc----cchhhhhHHhhhhhhhhccccccccccccccccccccccc-------CCc-cccCCCCCCEE
Confidence            765  232221111    11457777777776644322 2556677777666543111       111 25677777777


Q ss_pred             EeecCCC
Q 047644          307 TLSAGVL  313 (314)
Q Consensus       307 ~l~~~~l  313 (314)
                      .++.|.|
T Consensus       178 ~ls~N~i  184 (199)
T d2omxa2         178 DISSNKV  184 (199)
T ss_dssp             ECCSSCC
T ss_pred             ECCCCCC
Confidence            7777655

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.3e-08  Score=74.26  Aligned_cols=37  Identities=32%  Similarity=0.489  Sum_probs=34.7

Q ss_pred             CcccCCCC----hHHHHHHhcCCChhhhhhhhccccccccc
Q 047644           18 EDRISCLP----DSILCQILSVPPTKDAVATSILSPRWKHA   54 (314)
Q Consensus        18 ~d~~~~LP----d~ll~~Ils~L~~~d~~~~~~vskrWr~l   54 (314)
                      .|.++.||    |||+.+||+||+.+|+++++.|||+|+++
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l   48 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRV   48 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHH
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            58899999    59999999999999999999999999975

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.43  E-value=8.7e-08  Score=77.87  Aligned_cols=79  Identities=11%  Similarity=0.037  Sum_probs=54.9

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|++..+...  .+ ..+..+++|+.|+++++...+.+ ....+++|+.|.+.++.+++  +.. +..++.|+.|.
T Consensus        41 ~~L~~L~l~~~~i~--~l-~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~L~~l~  113 (227)
T d1h6ua2          41 DGITTLSAFGTGVT--TI-EGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPLKN--VSA-IAGLQSIKTLD  113 (227)
T ss_dssp             HTCCEEECTTSCCC--CC-TTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCCSC--CGG-GTTCTTCCEEE
T ss_pred             CCcCEEECCCCCCC--cc-hhHhcCCCCcEeecCCceeeccc-cccccccccccccccccccc--ccc-ccccccccccc
Confidence            47888887766433  33 34667888888888887665554 46778888888888777643  222 46788888888


Q ss_pred             eeeeec
Q 047644          204 LTVYFT  209 (314)
Q Consensus       204 L~~c~~  209 (314)
                      +.+|..
T Consensus       114 l~~~~~  119 (227)
T d1h6ua2         114 LTSTQI  119 (227)
T ss_dssp             CTTSCC
T ss_pred             cccccc
Confidence            887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.7e-08  Score=82.25  Aligned_cols=174  Identities=13%  Similarity=0.037  Sum_probs=113.7

Q ss_pred             CCceEEEEEecCCCccccCC-cccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPA-SIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~-~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      +++++|+|+.+...  .++. .+..+++|++|.|+++.....+ ....+++|++|+|.+..+..  ....+...|.|+.|
T Consensus        31 ~~l~~L~Ls~N~i~--~l~~~~f~~l~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHLSENLLY--TFSLATLMPYTRLTQLNLDRAELTKLQ-VDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEECTTSCCS--EEEGGGGTTCTTCCEEECTTSCCCEEE-CCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEE
T ss_pred             cCCCEEECcCCcCC--CcCHHHhhccccccccccccccccccc-cccccccccccccccccccc--cccccccccccccc
Confidence            57888888776432  3443 3456789999999998666665 55789999999999888733  13346788999999


Q ss_pred             eeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEe
Q 047644          203 SLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYY  279 (314)
Q Consensus       203 ~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~  279 (314)
                      ++.++.. ..+.....-...+++.|.+.   ......- ........++|+.|.+++.....   ..+..+++|+++++.
T Consensus       106 ~l~~~~~-~~~~~~~~~~l~~l~~L~l~---~n~l~~l-~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls  180 (266)
T d1p9ag_         106 DVSFNRL-TSLPLGALRGLGELQELYLK---GNELKTL-PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ  180 (266)
T ss_dssp             ECCSSCC-CCCCSSTTTTCTTCCEEECT---TSCCCCC-CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ccccccc-ceeecccccccccccccccc---cccccee-ccccccccccchhcccccccccccCccccccccccceeecc
Confidence            9998865 32201111234677777775   2221111 11222356889999999876542   236778999999987


Q ss_pred             EEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          280 VMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       280 ~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ......       +..-+..+++++.|.|++|+++
T Consensus       181 ~N~L~~-------lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         181 ENSLYT-------IPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             SSCCCC-------CCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCCcc-------cChhHCCCCCCCEEEecCCCCC
Confidence            653221       1112335788999999999863

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.22  E-value=2.9e-07  Score=73.81  Aligned_cols=146  Identities=19%  Similarity=0.124  Sum_probs=103.2

Q ss_pred             cCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceE
Q 047644          148 SITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTF  227 (314)
Q Consensus       148 c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L  227 (314)
                      ..+|+.|.++++...+.+ +...+++|++|+|.+..+++  +.. +..+++|+.|++.+|.. .++ ..+ -..++|+.|
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~--l~~-~~~l~~L~~L~l~~n~i-~~l-~~l-~~l~~L~~L  117 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD--IKP-LANLKNLGWLFLDENKV-KDL-SSL-KDLKKLKSL  117 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCC-CCG-GGG-TTCTTCCEE
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccC--ccc-cccCccccccccccccc-ccc-ccc-ccccccccc
Confidence            468999999998766665 66789999999999998854  232 47899999999999865 444 221 135788999


Q ss_pred             EEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc-ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEE
Q 047644          228 VLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCL  306 (314)
Q Consensus       228 ~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L  306 (314)
                      .+.  ++....   ... ....++|+.+.+++.... ......++.|+.+++..+...       .+. -+.+++++++|
T Consensus       118 ~l~--~~~~~~---~~~-l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~-------~i~-~l~~l~~L~~L  183 (210)
T d1h6ta2         118 SLE--HNGISD---ING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIS-------DIV-PLAGLTKLQNL  183 (210)
T ss_dssp             ECT--TSCCCC---CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCC-------CCG-GGTTCTTCCEE
T ss_pred             ccc--cccccc---ccc-cccccccccccccccccccccccccccccccccccccccc-------ccc-cccCCCCCCEE
Confidence            886  333211   111 235688999999887544 234567899998888654221       122 27899999999


Q ss_pred             EeecCCCC
Q 047644          307 TLSAGVLH  314 (314)
Q Consensus       307 ~l~~~~l~  314 (314)
                      .++.|.|+
T Consensus       184 ~Ls~N~i~  191 (210)
T d1h6ta2         184 YLSKNHIS  191 (210)
T ss_dssp             ECCSSCCC
T ss_pred             ECCCCCCC
Confidence            99999874

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=7.2e-07  Score=77.61  Aligned_cols=145  Identities=17%  Similarity=0.068  Sum_probs=80.6

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeecc----------------
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTA----------------  210 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~----------------  210 (314)
                      .+++|+.|.++++...+.+ ....+++|+.|.+.++.+++-  .. +..+|.|++|+++++...                
T Consensus       217 ~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~  292 (384)
T d2omza2         217 ILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGANQISNISPLAGLTALTNLEL  292 (384)
T ss_dssp             GCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             ccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCC--Cc-ccccccCCEeeccCcccCCCCccccccccccccc
Confidence            3456666666665444433 344556666666666555321  11 445666666666554320                


Q ss_pred             -----CCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce-eecCCCCceeEEEeEEecc
Q 047644          211 -----ANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYVMFSE  284 (314)
Q Consensus       211 -----~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~~~~~  284 (314)
                           .++ .. ....+.++.|+++  ++ ...+  ... .-..|+|++|.++++....+ .+.++|+|+.++++.+...
T Consensus       293 ~~n~l~~~-~~-~~~~~~l~~L~ls--~n-~l~~--l~~-l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         293 NENQLEDI-SP-ISNLKNLTYLTLY--FN-NISD--ISP-VSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CSSCCSCC-GG-GGGCTTCSEEECC--SS-CCSC--CGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccc-cc-cchhcccCeEECC--CC-CCCC--Ccc-cccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCC
Confidence                 111 00 1134567777775  23 2221  111 12578889999888754422 3677888888888764221


Q ss_pred             CCCCCCCChHHHhhcCCCceEEEeecC
Q 047644          285 WPPIDRRPPVQLLAGMTKTKCLTLSAG  311 (314)
Q Consensus       285 ~~~~~~~~~~~ll~~~~~l~~L~l~~~  311 (314)
                      .       +. -+.++++++.|+|+.|
T Consensus       365 ~-------l~-~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         365 D-------LT-PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             B-------CG-GGTTCTTCSEEECCCE
T ss_pred             C-------Ch-hhccCCCCCEeeCCCC
Confidence            1       11 1678889999988876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2e-07  Score=77.64  Aligned_cols=160  Identities=18%  Similarity=0.125  Sum_probs=106.7

Q ss_pred             ccccCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCc
Q 047644          138 RIPLPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASN  216 (314)
Q Consensus       138 ~~~l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~  216 (314)
                      -..+|..+.  ++|++|.|+++.+...++ ....+++|++|+|.+..++.  +. .....|.|+.|+|+++.. ... ..
T Consensus        22 L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~Ls~N~l-~~~-~~   94 (266)
T d1p9ag_          22 LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQ-VDGTLPVLGTLDLSHNQL-QSL-PL   94 (266)
T ss_dssp             CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EE-CCSCCTTCCEEECCSSCC-SSC-CC
T ss_pred             CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cc-cccccccccccccccccc-ccc-cc
Confidence            345666543  589999999986655542 45689999999999887742  22 235789999999999865 332 22


Q ss_pred             EEEecCCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCCh
Q 047644          217 LIISSATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPP  293 (314)
Q Consensus       217 ~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~  293 (314)
                      ..-..++|+.|+++  ++.....  ........+++++|.+.+....   ...+..++.++.+++......      ...
T Consensus        95 ~~~~l~~L~~L~l~--~~~~~~~--~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~------~~~  164 (266)
T d1p9ag_          95 LGQTLPALTVLDVS--FNRLTSL--PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT------ELP  164 (266)
T ss_dssp             CTTTCTTCCEEECC--SSCCCCC--CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS------CCC
T ss_pred             cccccccccccccc--cccccee--eccccccccccccccccccccceeccccccccccchhccccccccc------ccC
Confidence            22244788999886  3322111  1122235688999999886543   233566888998888765321      223


Q ss_pred             HHHhhcCCCceEEEeecCCCC
Q 047644          294 VQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       294 ~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      ...+..+++++.|.|+.|.|+
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC
T ss_pred             ccccccccccceeecccCCCc
Confidence            345788999999999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.07  E-value=1.1e-06  Score=71.16  Aligned_cols=151  Identities=15%  Similarity=0.032  Sum_probs=100.2

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT  226 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~  226 (314)
                      .+.+|+.|.+.++...+.+ +...+++|++|+|.+..+++-  .. +..|+.|+.|.+.+|.. .++ ..+. ..++|+.
T Consensus        39 ~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~~-~~i-~~l~-~l~~L~~  111 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPL-KNV-SAIA-GLQSIKT  111 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCC-SCC-GGGT-TCTTCCE
T ss_pred             HcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecc--cc-ccccccccccccccccc-ccc-cccc-ccccccc
Confidence            4689999999998766665 677999999999999987442  22 68999999999998865 444 2211 3455666


Q ss_pred             EEEEeeeeCCCCCCC------cc------------eEEEEcCCccEEEeeccccc-ceeecCCCCceeEEEeEEeccCCC
Q 047644          227 FVLEVMYCSHSSAPN------QH------------TVTIVAPNLEFLDITDDLAV-SYAVHQLPSLHKAVYYVMFSEWPP  287 (314)
Q Consensus       227 L~i~~~~c~~~~~~~------~~------------~l~~~~p~L~~L~l~~~~~~-~~~~~~~p~L~~l~l~~~~~~~~~  287 (314)
                      |.++  .|.......      ..            .-...+++|++|.+.+.... ...+.+++.|+++++..+...   
T Consensus       112 l~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~---  186 (227)
T d1h6ua2         112 LDLT--STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS---  186 (227)
T ss_dssp             EECT--TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC---
T ss_pred             cccc--cccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccC---
Confidence            6554  222110000      00            00125677888888876544 234678899999888654221   


Q ss_pred             CCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          288 IDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       288 ~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                          .+. .+.++++++.|.|+.|.|.
T Consensus       187 ----~l~-~l~~l~~L~~L~Ls~N~lt  208 (227)
T d1h6ua2         187 ----DIS-PLASLPNLIEVHLKNNQIS  208 (227)
T ss_dssp             ----CCG-GGGGCTTCCEEECTTSCCC
T ss_pred             ----CCh-hhcCCCCCCEEECcCCcCC
Confidence                121 2788999999999998763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=1.6e-07  Score=72.28  Aligned_cols=60  Identities=13%  Similarity=0.124  Sum_probs=33.4

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      .+.+|++|+|+++.....+.....+++|+.|+|++..+..  +.. +..+|.|++|++++|..
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~N~i   75 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNNNRI   75 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCSSCC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhcccccc
Confidence            3456666666666544444233456666666666665522  111 45666666666666643

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.98  E-value=2.7e-06  Score=73.86  Aligned_cols=156  Identities=15%  Similarity=0.057  Sum_probs=103.2

Q ss_pred             cCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEe
Q 047644          141 LPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIIS  220 (314)
Q Consensus       141 l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~  220 (314)
                      .......+++++.+.++++...+.+ ....+++|++|++.+..+.+-  . .+..++.|+.|++.++.. .+. .. .-.
T Consensus       189 ~~~~~~~l~~~~~l~l~~n~i~~~~-~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l-~~~-~~-~~~  261 (384)
T d2omza2         189 DISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQI-SNL-AP-LSG  261 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCC-CCC-GG-GTT
T ss_pred             cccccccccccceeeccCCccCCCC-cccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCcc-CCC-Cc-ccc
Confidence            3444556789999999987655554 456789999999999988542  2 357889999999999865 443 21 113


Q ss_pred             cCCcceEEEEeeeeCCCCCC-C------cce------------EEEEcCCccEEEeecccccce-eecCCCCceeEEEeE
Q 047644          221 SATLKTFVLEVMYCSHSSAP-N------QHT------------VTIVAPNLEFLDITDDLAVSY-AVHQLPSLHKAVYYV  280 (314)
Q Consensus       221 ~~~Lk~L~i~~~~c~~~~~~-~------~~~------------l~~~~p~L~~L~l~~~~~~~~-~~~~~p~L~~l~l~~  280 (314)
                      .++|+.|+++  .+ ..... .      ...            .....++++.|++++...... .+..+|+|+++++..
T Consensus       262 ~~~L~~L~l~--~~-~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~  338 (384)
T d2omza2         262 LTKLTELKLG--AN-QISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN  338 (384)
T ss_dssp             CTTCSEEECC--SS-CCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCS
T ss_pred             cccCCEeecc--Cc-ccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCC
Confidence            4667777775  12 11100 0      000            023457788888887755432 367899999999976


Q ss_pred             EeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          281 MFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       281 ~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      +...       .+. -+.++++++.|++++|.|+
T Consensus       339 n~l~-------~l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         339 NKVS-------DVS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             SCCC-------CCG-GGGGCTTCCEEECCSSCCC
T ss_pred             CCCC-------CCh-hHcCCCCCCEEECCCCcCC
Confidence            5221       122 3788999999999998764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.85  E-value=3.2e-08  Score=78.94  Aligned_cols=84  Identities=15%  Similarity=0.089  Sum_probs=48.1

Q ss_pred             cCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEe
Q 047644          141 LPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIIS  220 (314)
Q Consensus       141 l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~  220 (314)
                      ++..+...++|++|.|+++...+.+ ....+++|+.|+|.+..+++  +..+...+|.|+.|++.++.. ..+ .. ...
T Consensus        40 l~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i-~~l-~~-~~~  113 (198)
T d1m9la_          40 MDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQI-ASL-SG-IEK  113 (198)
T ss_dssp             CHHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEEC-CCH-HH-HHH
T ss_pred             hhhHHhcccccceeECcccCCCCcc-cccCCccccChhhccccccc--ccccccccccccccccccccc-ccc-cc-ccc
Confidence            3444555677777777776555554 45567777777777777633  222333456777777777754 222 11 012


Q ss_pred             cCCcceEEEE
Q 047644          221 SATLKTFVLE  230 (314)
Q Consensus       221 ~~~Lk~L~i~  230 (314)
                      .++|+.|+++
T Consensus       114 l~~L~~L~L~  123 (198)
T d1m9la_         114 LVNLRVLYMS  123 (198)
T ss_dssp             HHHSSEEEES
T ss_pred             cccccccccc
Confidence            3456666664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=2e-06  Score=71.92  Aligned_cols=134  Identities=19%  Similarity=0.089  Sum_probs=75.7

Q ss_pred             CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEEeeeeCCCCCCCcceEEE
Q 047644          168 GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLEVMYCSHSSAPNQHTVTI  247 (314)
Q Consensus       168 ~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~~~~c~~~~~~~~~~l~~  247 (314)
                      ...+++|+.|.|.+..+... ....+..++.|+.+.+.+... ..+.....-..+.|+.|++.  ++.....  ......
T Consensus       101 ~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~L~~l~l~~N~l-~~i~~~~f~~~~~L~~L~l~--~N~l~~l--~~~~f~  174 (284)
T d1ozna_         101 FHGLGRLHTLHLDRCGLQEL-GPGLFRGLAALQYLYLQDNAL-QALPDDTFRDLGNLTHLFLH--GNRISSV--PERAFR  174 (284)
T ss_dssp             TTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECC--SSCCCEE--CTTTTT
T ss_pred             hcccccCCEEecCCcccccc-cccccchhcccchhhhccccc-cccChhHhccccchhhcccc--cCccccc--chhhhc
Confidence            34566777777766655221 123345666777777766644 22200100133567777775  2321110  001112


Q ss_pred             EcCCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          248 VAPNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       248 ~~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..++|+++.+.+....   ...+..+++|+.+++.....      .......+..+++++.|.|++|++
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i------~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL------SALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC------SCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccchhhhhhccccccChhHhhhhhhccccccccccc------ccccccccccccccCEEEecCCCC
Confidence            4577888887765443   23356678888877765422      223456788999999999999876

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.8e-07  Score=70.08  Aligned_cols=81  Identities=16%  Similarity=0.014  Sum_probs=55.8

Q ss_pred             CceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceee
Q 047644          125 NVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSL  204 (314)
Q Consensus       125 ~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L  204 (314)
                      .+++|+|..+...  .++.....+++|+.|+|+++.....+ ....+++|++|+|.+..++.- -..++..+|.|++|.+
T Consensus        19 ~lr~L~L~~n~I~--~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l-~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRI-GEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTSCCC--SCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEE-CSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCCCCC--ccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCC-Ccccccccccccccee
Confidence            5677777766433  33443345688999999888666654 667788899999988877321 1224457888999998


Q ss_pred             eeeec
Q 047644          205 TVYFT  209 (314)
Q Consensus       205 ~~c~~  209 (314)
                      .++..
T Consensus        95 ~~N~i   99 (162)
T d1a9na_          95 TNNSL   99 (162)
T ss_dssp             CSCCC
T ss_pred             ccccc
Confidence            88854

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.71  E-value=5.2e-06  Score=70.29  Aligned_cols=181  Identities=13%  Similarity=-0.001  Sum_probs=92.7

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      ..+++|+|+.+..-...+|..+..+++|++|+|+++.+...+ .....++.|+.+.+.+..+... +..-+..++.|+.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCccccee
Confidence            467777776543223356777777777777777776544432 2345567777777766554221 22345677888888


Q ss_pred             eeeeeeccCCCC----------CcEEEec-----------CCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeeccc
Q 047644          203 SLTVYFTAANPA----------SNLIISS-----------ATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDL  261 (314)
Q Consensus       203 ~L~~c~~~~~~~----------~~~~i~~-----------~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~  261 (314)
                      .+.++.....++          ..+.+..           ..+..+.+.  .................++|+.+.+.+..
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~--l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  232 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD--LSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEE--CCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             ecccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence            877664300000          0000000           011111111  00000000011112244667777777654


Q ss_pred             cc--ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCC
Q 047644          262 AV--SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVL  313 (314)
Q Consensus       262 ~~--~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l  313 (314)
                      ..  ...++.++.|+.+++..+...      +.+..-+.++++++.|.|+.|.|
T Consensus       233 l~~~~~~~~~~~~L~~L~Ls~N~l~------g~iP~~l~~L~~L~~L~Ls~N~l  280 (313)
T d1ogqa_         233 LAFDLGKVGLSKNLNGLDLRNNRIY------GTLPQGLTQLKFLHSLNVSFNNL  280 (313)
T ss_dssp             ECCBGGGCCCCTTCCEEECCSSCCE------ECCCGGGGGCTTCCEEECCSSEE
T ss_pred             ccccccccccccccccccCccCeec------ccCChHHhCCCCCCEEECcCCcc
Confidence            32  123456677777777654221      12334577888899999888865

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.62  E-value=7.4e-06  Score=69.30  Aligned_cols=104  Identities=14%  Similarity=0.192  Sum_probs=72.2

Q ss_pred             CceEEEEEecCCC-ccccCCcccccCCeeEEEEcce-eec-ccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          125 NVREIEIDLRDHE-RIPLPASIYRSITLEVLRLRSY-FAL-TLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       125 ~l~~L~l~~~~~~-~~~l~~~~~~c~~L~~L~L~~~-~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      +|.+|+|...... ...+|..+..+++|++|+|+++ .+. ..|.....+++|++|+|.+..+... ....+..++.|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhcc
Confidence            6888998876433 3478899999999999999875 333 5665678899999999999987321 2344678899999


Q ss_pred             eeeeeeeccCCCCCcEEEecCCcceEEEE
Q 047644          202 LSLTVYFTAANPASNLIISSATLKTFVLE  230 (314)
Q Consensus       202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~  230 (314)
                      +.+..+...... ...--..+.|+.+.+.
T Consensus       130 l~l~~N~~~~~~-p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_         130 LDFSYNALSGTL-PPSISSLPNLVGITFD  157 (313)
T ss_dssp             EECCSSEEESCC-CGGGGGCTTCCEEECC
T ss_pred             cccccccccccC-chhhccCcccceeecc
Confidence            999987651111 0000133566666664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=1.6e-05  Score=66.15  Aligned_cols=133  Identities=15%  Similarity=-0.012  Sum_probs=87.3

Q ss_pred             CcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEec
Q 047644          143 ASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISS  221 (314)
Q Consensus       143 ~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~  221 (314)
                      ..+..+++|++|.++++.....+ .....+++|+.+.+.+..++.- ....++.++.|++|++.++.. ..+........
T Consensus        99 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i-~~~~f~~~~~L~~L~l~~N~l-~~l~~~~f~~l  176 (284)
T d1ozna_          99 ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRI-SSVPERAFRGL  176 (284)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC-CEECTTTTTTC
T ss_pred             hhhcccccCCEEecCCcccccccccccchhcccchhhhcccccccc-ChhHhccccchhhcccccCcc-cccchhhhccc
Confidence            34556799999999998654443 2455688899999998877431 134577899999999999864 21101111245


Q ss_pred             CCcceEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccc---eeecCCCCceeEEEeEE
Q 047644          222 ATLKTFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVS---YAVHQLPSLHKAVYYVM  281 (314)
Q Consensus       222 ~~Lk~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~---~~~~~~p~L~~l~l~~~  281 (314)
                      ++|+.|.+.  ++.. ....+ ...-..++|++|++++.....   ..+.++++|+.++++..
T Consensus       177 ~~L~~l~l~--~N~l-~~i~~-~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         177 HSLDRLLLH--QNRV-AHVHP-HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             TTCCEEECC--SSCC-CEECT-TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cccchhhhh--hccc-cccCh-hHhhhhhhcccccccccccccccccccccccccCEEEecCC
Confidence            788888885  2221 11101 111245899999999876552   34778999999998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=1.9e-05  Score=57.34  Aligned_cols=62  Identities=19%  Similarity=0.148  Sum_probs=32.7

Q ss_pred             ccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeec
Q 047644          145 IYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       145 ~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      +..+++|++|.++++...+.|+....+++|+.|++.+..++.  +.. +..+|.|++|.+.++..
T Consensus        16 l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNNRL   77 (124)
T ss_dssp             GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSSCC
T ss_pred             cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCCcc
Confidence            444556666666655444444334455666666666655532  122 34556666666665543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.46  E-value=6.1e-06  Score=60.02  Aligned_cols=73  Identities=15%  Similarity=0.076  Sum_probs=51.3

Q ss_pred             eEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEEEE
Q 047644          152 EVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFVLE  230 (314)
Q Consensus       152 ~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~  230 (314)
                      +.|+|++....+.+ ....+++|++|+|.+..+..  +..-+..+++|+.|+++++.. .++ ..+ -..++|+.|++.
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i-~~l-~~~-~~l~~L~~L~l~   73 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNAL-ENV-DGV-ANLPRLQELLLC   73 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCC-CCC-GGG-TTCSSCCEEECC
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccc-ccc-Ccc-ccccccCeEECC
Confidence            46788887666665 67789999999999988843  333467899999999999865 444 221 133566666664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00013  Score=58.73  Aligned_cols=84  Identities=17%  Similarity=0.108  Sum_probs=50.0

Q ss_pred             CCceEEEEEecCCCccccCCc-ccccCCeeEEEEcceeeccc-CC-CCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccc
Q 047644          124 RNVREIEIDLRDHERIPLPAS-IYRSITLEVLRLRSYFALTL-PP-DGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQ  200 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~-~~~c~~L~~L~L~~~~~~~~-~~-~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le  200 (314)
                      +++++|++..+..  ..++.. +..+++|++|.++++...+. +. .+..++++++|.+..+.--.......+.++|.|+
T Consensus        29 ~~l~~L~Ls~n~i--~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~  106 (242)
T d1xwdc1          29 RNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ  106 (242)
T ss_dssp             SCCSEEEEESCCC--CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCC
T ss_pred             CCCCEEECcCCcC--CccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccccccccccc
Confidence            4678888876543  244443 34578888888877744332 21 3346777787776654211111123456788888


Q ss_pred             ceeeeeeec
Q 047644          201 HLSLTVYFT  209 (314)
Q Consensus       201 ~L~L~~c~~  209 (314)
                      +|.+.++..
T Consensus       107 ~l~l~~~~l  115 (242)
T d1xwdc1         107 YLLISNTGI  115 (242)
T ss_dssp             EEEEESCCC
T ss_pred             ccccchhhh
Confidence            888887744

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.18  E-value=1e-06  Score=75.87  Aligned_cols=221  Identities=14%  Similarity=0.087  Sum_probs=129.1

Q ss_pred             HHHHHHHccCCCCCeeEEEEEeccC-CCc----chHHHHHHHHHh-CCceEEEEEecCCC---ccccCCcccccCCeeEE
Q 047644           84 KFVHSVLARTHPSSVEKFSLRCSYL-RSL----GMFDYWVSSAIS-RNVREIEIDLRDHE---RIPLPASIYRSITLEVL  154 (314)
Q Consensus        84 ~~v~~~l~~~~~~~l~~l~l~~~~~-~~~----~~~~~w~~~~~~-~~l~~L~l~~~~~~---~~~l~~~~~~c~~L~~L  154 (314)
                      ..+...+...  ..++.+.+..... ...    ..+...+..... +++++|++..+..+   ...+...+..+++|++|
T Consensus        49 ~~l~~~l~~~--~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L  126 (344)
T d2ca6a1          49 RWLSENIASK--KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL  126 (344)
T ss_dssp             HHHHHTTTTC--TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEE
T ss_pred             HHHHHHHHhC--CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchhe
Confidence            3444444433  3488888764432 111    222223322222 46999999765432   22344445567899999


Q ss_pred             EEcceeeccc---------C-----CCCcCCCCcceEEeeeEEcCCCcH---HHHhcCCccccceeeeeeeccCCCCCc-
Q 047644          155 RLRSYFALTL---------P-----PDGVCFPRLKTFHLMLQQPTNHLP---HNLFSRCPCLQHLSLTVYFTAANPASN-  216 (314)
Q Consensus       155 ~L~~~~~~~~---------~-----~~~~~~~~L~~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~c~~~~~~~~~-  216 (314)
                      .++++.+.+.         .     ......+.|+.|.+.+..+++..+   ...+..++.|++|.|.+|.. .+. .. 
T Consensus       127 ~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~~~-g~~  204 (344)
T d2ca6a1         127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI-RPE-GIE  204 (344)
T ss_dssp             ECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCC-CHH-HHH
T ss_pred             ecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccc-ccc-ccc
Confidence            9988743210         0     011357889999999888765544   44567899999999999864 221 10 


Q ss_pred             --E---EEecCCcceEEEEeeeeCCCCCCCcceE---EEEcCCccEEEeecccccc---e----ee--cCCCCceeEEEe
Q 047644          217 --L---IISSATLKTFVLEVMYCSHSSAPNQHTV---TIVAPNLEFLDITDDLAVS---Y----AV--HQLPSLHKAVYY  279 (314)
Q Consensus       217 --~---~i~~~~Lk~L~i~~~~c~~~~~~~~~~l---~~~~p~L~~L~l~~~~~~~---~----~~--~~~p~L~~l~l~  279 (314)
                        +   --.+++|+.|+++   .+..+..+...+   .-.+|+|++|.++++....   .    .+  ...+.|++++++
T Consensus       205 ~~l~~~l~~~~~L~~L~Ls---~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls  281 (344)
T d2ca6a1         205 HLLLEGLAYCQELKVLDLQ---DNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQ  281 (344)
T ss_dssp             HHHHTTGGGCTTCCEEECC---SSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECC
T ss_pred             cchhhhhcchhhhcccccc---cccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECC
Confidence              1   1146789999986   323222111111   2367999999999886441   1    11  234678888887


Q ss_pred             EEeccCCCCCCCChHHHhh-cCCCceEEEeecCCC
Q 047644          280 VMFSEWPPIDRRPPVQLLA-GMTKTKCLTLSAGVL  313 (314)
Q Consensus       280 ~~~~~~~~~~~~~~~~ll~-~~~~l~~L~l~~~~l  313 (314)
                      .+......  ...+.+.+. .+++++.|.|++|.+
T Consensus       282 ~N~i~~~~--~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         282 YNEIELDA--VRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             SSCCBHHH--HHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCcCChHH--HHHHHHHHHccCCCCCEEECCCCcC
Confidence            65221000  122455554 689999999999876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.09  E-value=6e-05  Score=63.20  Aligned_cols=59  Identities=20%  Similarity=0.144  Sum_probs=30.4

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      .+++|+.+.+..+.....+  ...+++|++|++.+...... ....+..++.++.|+++++.
T Consensus       148 ~l~~L~~l~l~~n~l~~l~--~~~~~~L~~L~l~~n~~~~~-~~~~~~~~~~l~~L~~s~n~  206 (305)
T d1xkua_         148 GMKKLSYIRIADTNITTIP--QGLPPSLTELHLDGNKITKV-DAASLKGLNNLAKLGLSFNS  206 (305)
T ss_dssp             GCTTCCEEECCSSCCCSCC--SSCCTTCSEEECTTSCCCEE-CTGGGTTCTTCCEEECCSSC
T ss_pred             cccccCccccccCCccccC--cccCCccCEEECCCCcCCCC-ChhHhhcccccccccccccc
Confidence            3456666666665444332  22356666666655443211 12334566666666666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.03  E-value=7e-05  Score=62.74  Aligned_cols=60  Identities=18%  Similarity=0.114  Sum_probs=41.1

Q ss_pred             cCCccEEEeeccccc---ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhcCCCceEEEeecCCCC
Q 047644          249 APNLEFLDITDDLAV---SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAGMTKTKCLTLSAGVLH  314 (314)
Q Consensus       249 ~p~L~~L~l~~~~~~---~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~~~~l~~L~l~~~~l~  314 (314)
                      .++|++|.+.+....   ...+.+++.++.+.+..+...      ......+.++++++.|+|++|.|+
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~------~~~~~~~~~l~~L~~L~L~~N~L~  232 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS------AVDNGSLANTPHLRELHLNNNKLV  232 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC------EECTTTGGGSTTCCEEECCSSCCS
T ss_pred             CCccCEEECCCCcCCCCChhHhhcccccccccccccccc------ccccccccccccceeeeccccccc
Confidence            578999998876544   234567778887777543221      112345778999999999998763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.89  E-value=6.1e-05  Score=58.82  Aligned_cols=103  Identities=17%  Similarity=0.081  Sum_probs=53.9

Q ss_pred             CCeeEEEEcceeecc-cC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcce
Q 047644          149 ITLEVLRLRSYFALT-LP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKT  226 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~-~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~  226 (314)
                      +++++|.|++..+.. .+ ..+..+++|+.|.|.+..+..- ....+...+.|++|.|++... .    .+         
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~l-~----~l---------   93 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENKI-K----EI---------   93 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCCC-C----EE---------
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeeccccc-c----cc---------
Confidence            456666666654432 11 1234566666666665554221 123344556666666655532 1    11         


Q ss_pred             EEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccccce---eecCCCCceeEEEeEE
Q 047644          227 FVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAVSY---AVHQLPSLHKAVYYVM  281 (314)
Q Consensus       227 L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~~~---~~~~~p~L~~l~l~~~  281 (314)
                                     ........++|++|++++.....+   .+..+++|+++++...
T Consensus        94 ---------------~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_          94 ---------------SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             ---------------CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred             ---------------CHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccc
Confidence                           000111467888888888765422   3566788888777544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.84  E-value=5.6e-06  Score=71.12  Aligned_cols=183  Identities=14%  Similarity=0.022  Sum_probs=98.8

Q ss_pred             CCceEEEEEecCCCc---------cccCCcccccCCeeEEEEcceeecccC-----CCCcCCCCcceEEeeeEEcCCCcH
Q 047644          124 RNVREIEIDLRDHER---------IPLPASIYRSITLEVLRLRSYFALTLP-----PDGVCFPRLKTFHLMLQQPTNHLP  189 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~---------~~l~~~~~~c~~L~~L~L~~~~~~~~~-----~~~~~~~~L~~L~L~~~~~~~~~l  189 (314)
                      ++++.+++..+....         ..+...+..|++|+.|+|+++...+..     .....+++|++|+|.++.+++.+.
T Consensus        59 ~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~  138 (344)
T d2ca6a1          59 KDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG  138 (344)
T ss_dssp             TTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred             CCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccc
Confidence            467788776442111         112233455778888888776432210     011246778888887776633222


Q ss_pred             HHH------------hcCCccccceeeeeeeccCCCCCcEEE-----ecCCcceEEEEeeeeCCCCCCCcc----eEEEE
Q 047644          190 HNL------------FSRCPCLQHLSLTVYFTAANPASNLII-----SSATLKTFVLEVMYCSHSSAPNQH----TVTIV  248 (314)
Q Consensus       190 ~~l------------l~~cp~Le~L~L~~c~~~~~~~~~~~i-----~~~~Lk~L~i~~~~c~~~~~~~~~----~l~~~  248 (314)
                      ..+            ...++.|+.|.+.++.. .+. ....+     ..++|+.|++.  +|.. +..+..    ...-.
T Consensus       139 ~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i-~~~-~~~~l~~~l~~~~~L~~L~L~--~n~i-~~~g~~~~l~~~l~~  213 (344)
T d2ca6a1         139 AKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENG-SMKEWAKTFQSHRLLHTVKMV--QNGI-RPEGIEHLLLEGLAY  213 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCC-TGG-GHHHHHHHHHHCTTCCEEECC--SSCC-CHHHHHHHHHTTGGG
T ss_pred             ccccccccccccccccccCcccceeecccccc-ccc-ccccccchhhhhhhhcccccc--cccc-cccccccchhhhhcc
Confidence            221            23567777777776643 221 11111     45688888886  3432 111111    11225


Q ss_pred             cCCccEEEeeccccc-------ceeecCCCCceeEEEeEEeccCCCCCCCChHHHhhc--CCCceEEEeecCCC
Q 047644          249 APNLEFLDITDDLAV-------SYAVHQLPSLHKAVYYVMFSEWPPIDRRPPVQLLAG--MTKTKCLTLSAGVL  313 (314)
Q Consensus       249 ~p~L~~L~l~~~~~~-------~~~~~~~p~L~~l~l~~~~~~~~~~~~~~~~~ll~~--~~~l~~L~l~~~~l  313 (314)
                      .++|+.|++++....       ...+...+.|++++++.+......  ...+...+..  .++++.|.|++|.|
T Consensus       214 ~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g--~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         214 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG--AAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH--HHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             hhhhcccccccccccccccccccccccccccchhhhhhcCccCchh--hHHHHHHhhhccCCCCCEEECCCCcC
Confidence            688899988876532       123556788888888655221000  1123344443  35688899988876

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.0032  Score=50.11  Aligned_cols=89  Identities=11%  Similarity=0.113  Sum_probs=52.4

Q ss_pred             ccCCcccccCCeeEEEEcceeecccCCC-CcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEE
Q 047644          140 PLPASIYRSITLEVLRLRSYFALTLPPD-GVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLI  218 (314)
Q Consensus       140 ~l~~~~~~c~~L~~L~L~~~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~  218 (314)
                      .+|..+.  +++++|+|++......|.. +.++++|++|.|.+..+...--...+.+++.+++|.+..|...........
T Consensus        22 ~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~   99 (242)
T d1xwdc1          22 EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF   99 (242)
T ss_dssp             SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSE
T ss_pred             CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccc
Confidence            4554433  4788888887765555533 457888888888877552211122355678888888777643111101122


Q ss_pred             EecCCcceEEEE
Q 047644          219 ISSATLKTFVLE  230 (314)
Q Consensus       219 i~~~~Lk~L~i~  230 (314)
                      -..+.|+.|.+.
T Consensus       100 ~~l~~L~~l~l~  111 (242)
T d1xwdc1         100 QNLPNLQYLLIS  111 (242)
T ss_dssp             ECCTTCCEEEEE
T ss_pred             cccccccccccc
Confidence            345778888886

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.26  E-value=0.00064  Score=52.67  Aligned_cols=85  Identities=14%  Similarity=0.049  Sum_probs=56.3

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccce
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHL  202 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L  202 (314)
                      .++++|+|+........-+..+...++|+.|.|+++.....+ .....+++|+.|.|.+..+..- -...+.+.|.|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l-~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI-SNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE-CSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccccc-CHHHHhCCCccccc
Confidence            467888887765432222333445788999999887655544 2555788899999888876221 12245678889999


Q ss_pred             eeeeeec
Q 047644          203 SLTVYFT  209 (314)
Q Consensus       203 ~L~~c~~  209 (314)
                      +|.+...
T Consensus       108 ~L~~N~l  114 (192)
T d1w8aa_         108 NLYDNQI  114 (192)
T ss_dssp             ECCSSCC
T ss_pred             ccCCccc
Confidence            8888754

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.23  E-value=0.0022  Score=53.76  Aligned_cols=93  Identities=20%  Similarity=0.175  Sum_probs=54.5

Q ss_pred             HhCCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccc
Q 047644          122 ISRNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQH  201 (314)
Q Consensus       122 ~~~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~  201 (314)
                      ...++++|+++.+.-  ..+|..   .++|++|.|+++...+.|   ..+.+|++|.+.+..++.  +..   -.+.|++
T Consensus        36 ~~~~l~~LdLs~~~L--~~lp~~---~~~L~~L~Ls~N~l~~lp---~~~~~L~~L~l~~n~l~~--l~~---lp~~L~~  102 (353)
T d1jl5a_          36 LDRQAHELELNNLGL--SSLPEL---PPHLESLVASCNSLTELP---ELPQSLKSLLVDNNNLKA--LSD---LPPLLEY  102 (353)
T ss_dssp             HHHTCSEEECTTSCC--SCCCSC---CTTCSEEECCSSCCSSCC---CCCTTCCEEECCSSCCSC--CCS---CCTTCCE
T ss_pred             HHcCCCEEEeCCCCC--CCCCCC---CCCCCEEECCCCCCcccc---cchhhhhhhhhhhcccch--hhh---hcccccc
Confidence            345778887766543  245542   357888888776555554   235678888877766532  111   1245888


Q ss_pred             eeeeeeeccCCCCCcEEEecCCcceEEEE
Q 047644          202 LSLTVYFTAANPASNLIISSATLKTFVLE  230 (314)
Q Consensus       202 L~L~~c~~~~~~~~~~~i~~~~Lk~L~i~  230 (314)
                      |++.++.. ..+ ... -..+.|+.|++.
T Consensus       103 L~L~~n~l-~~l-p~~-~~l~~L~~L~l~  128 (353)
T d1jl5a_         103 LGVSNNQL-EKL-PEL-QNSSFLKIIDVD  128 (353)
T ss_dssp             EECCSSCC-SSC-CCC-TTCTTCCEEECC
T ss_pred             cccccccc-ccc-cch-hhhccceeeccc
Confidence            88887754 333 211 134567777765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=96.07  E-value=0.00032  Score=54.91  Aligned_cols=99  Identities=12%  Similarity=0.159  Sum_probs=71.1

Q ss_pred             CCceEEEEEecCCCccccCCcccccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCcccccee
Q 047644          124 RNVREIEIDLRDHERIPLPASIYRSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLS  203 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~l~~~~~~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~  203 (314)
                      .++++|+++.+...  .++ .+..+++|+.|.|+++...+.+.....+++|+.|++.+..++.  +.. +..+++|+.|+
T Consensus        48 ~~L~~L~Ls~n~I~--~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~  121 (198)
T d1m9la_          48 KACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--LSG-IEKLVNLRVLY  121 (198)
T ss_dssp             TTCCEEECSEEEES--CCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC--HHH-HHHHHHSSEEE
T ss_pred             cccceeECcccCCC--Ccc-cccCCccccChhhcccccccccccccccccccccccccccccc--ccc-ccccccccccc
Confidence            58999999776433  233 4667899999999998776665233456789999999998854  433 56789999999


Q ss_pred             eeeeeccCCCCCcE-EE-ecCCcceEEEE
Q 047644          204 LTVYFTAANPASNL-II-SSATLKTFVLE  230 (314)
Q Consensus       204 L~~c~~~~~~~~~~-~i-~~~~Lk~L~i~  230 (314)
                      ++++.. .++ ..+ .+ ..++|+.|.++
T Consensus       122 L~~N~i-~~~-~~~~~l~~l~~L~~L~L~  148 (198)
T d1m9la_         122 MSNNKI-TNW-GEIDKLAALDKLEDLLLA  148 (198)
T ss_dssp             ESEEEC-CCH-HHHHHHTTTTTCSEEEEC
T ss_pred             cccchh-ccc-cccccccCCCccceeecC
Confidence            999865 433 221 12 45789999996

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=9.9e-05  Score=64.81  Aligned_cols=58  Identities=12%  Similarity=-0.013  Sum_probs=31.4

Q ss_pred             CeeEEEEcceeeccc--CCCCcCCCCcceEEeeeEEcCCCcH---HHHhcCCccccceeeeee
Q 047644          150 TLEVLRLRSYFALTL--PPDGVCFPRLKTFHLMLQQPTNHLP---HNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       150 ~L~~L~L~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~c  207 (314)
                      +|++|+++.....+.  ......+++||+|+|.+|.+++.++   ...+..||.|++|+|+++
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N   65 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN   65 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC
Confidence            466666655433221  1123345666666666666654433   333456666666666655

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.28  E-value=0.0034  Score=47.30  Aligned_cols=37  Identities=11%  Similarity=0.001  Sum_probs=16.6

Q ss_pred             CCCcceEEeeeEEcCCCcH---HHHhcCCccccceeeeee
Q 047644          171 FPRLKTFHLMLQQPTNHLP---HNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       171 ~~~L~~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~c  207 (314)
                      .+.|++|+|.++.++++++   ...+..++.|++|+|.++
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCC
Confidence            3445555555554433322   223444455555555444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.011  Score=51.14  Aligned_cols=108  Identities=14%  Similarity=0.088  Sum_probs=67.0

Q ss_pred             eeEEEEEeccCCCcchHHHHHHHHHhCCceEEEEEecCCCc---cccCCcccccCCeeEEEEcceeeccc-----CC-CC
Q 047644           98 VEKFSLRCSYLRSLGMFDYWVSSAISRNVREIEIDLRDHER---IPLPASIYRSITLEVLRLRSYFALTL-----PP-DG  168 (314)
Q Consensus        98 l~~l~l~~~~~~~~~~~~~w~~~~~~~~l~~L~l~~~~~~~---~~l~~~~~~c~~L~~L~L~~~~~~~~-----~~-~~  168 (314)
                      |+++.+++.. ..+..+..++..  -++++.|+|+.|..+.   ..+...+..+++|+.|+|+++...+.     .. ..
T Consensus         4 l~~ld~~~~~-i~~~~~~~l~~~--l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           4 IQSLDIQCEE-LSDARWAELLPL--LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEESCC-CCHHHHHHHHHH--HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCEEEeeCCc-CChHHHHHHHHh--CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            6677775443 233333344422  2688888888875332   13334455688899999988743221     00 11


Q ss_pred             cCCCCcceEEeeeEEcCCCcH---HHHhcCCccccceeeeeee
Q 047644          169 VCFPRLKTFHLMLQQPTNHLP---HNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       169 ~~~~~L~~L~L~~~~~~~~~l---~~ll~~cp~Le~L~L~~c~  208 (314)
                      ...++|++|+|.++.+++.++   ...+..|+.|++|++.++.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhcccccccccccccc
Confidence            234579999999888866554   4456788999999988764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.86  E-value=0.0057  Score=51.12  Aligned_cols=96  Identities=14%  Similarity=0.052  Sum_probs=64.5

Q ss_pred             CCeeEEEEcceeecccCCCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcceEE
Q 047644          149 ITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLKTFV  228 (314)
Q Consensus       149 ~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk~L~  228 (314)
                      .+|++|+|+++.....|   ...++|++|.|++..+++  +.   ...++|++|.+.++.. ..+ ..   -.+.|+.|+
T Consensus        38 ~~l~~LdLs~~~L~~lp---~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~l~~n~l-~~l-~~---lp~~L~~L~  104 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP---ELPPHLESLVASCNSLTE--LP---ELPQSLKSLLVDNNNL-KAL-SD---LPPLLEYLG  104 (353)
T ss_dssp             HTCSEEECTTSCCSCCC---SCCTTCSEEECCSSCCSS--CC---CCCTTCCEEECCSSCC-SCC-CS---CCTTCCEEE
T ss_pred             cCCCEEEeCCCCCCCCC---CCCCCCCEEECCCCCCcc--cc---cchhhhhhhhhhhccc-chh-hh---hcccccccc
Confidence            57999999998666655   246899999998877642  22   2357899999998865 434 22   235799999


Q ss_pred             EEeeeeCCCCCCCcceEEEEcCCccEEEeeccccc
Q 047644          229 LEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLAV  263 (314)
Q Consensus       229 i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~~  263 (314)
                      ++   .+....  ... ....++|+.|++.+....
T Consensus       105 L~---~n~l~~--lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         105 VS---NNQLEK--LPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             CC---SSCCSS--CCC-CTTCTTCCEEECCSSCCS
T ss_pred             cc---cccccc--ccc-hhhhccceeecccccccc
Confidence            96   333221  111 135688999999876543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.70  E-value=0.0031  Score=47.00  Aligned_cols=68  Identities=15%  Similarity=0.069  Sum_probs=31.6

Q ss_pred             ccCCcccccCCeeEEEEccee-ecccC-CCCcCCCCcceEEeeeEEcCCCcHHHHhcCCccccceeeeeee
Q 047644          140 PLPASIYRSITLEVLRLRSYF-ALTLP-PDGVCFPRLKTFHLMLQQPTNHLPHNLFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       140 ~l~~~~~~c~~L~~L~L~~~~-~~~~~-~~~~~~~~L~~L~L~~~~~~~~~l~~ll~~cp~Le~L~L~~c~  208 (314)
                      ..|..+...++|++|.+.+.. ....+ ..+.++++|+.|+|.+..++.-. ...+.+.++|++|+|++..
T Consensus        22 ~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC
Confidence            344444455566666664432 22221 12344556666666555542100 1234455566666665553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.0068  Score=44.99  Aligned_cols=109  Identities=14%  Similarity=-0.051  Sum_probs=63.0

Q ss_pred             ccCCeeEEEEcceeecccCCCCcCCCCcceEEeeeEE-cCCCcHHHHhcCCccccceeeeeeeccCCCCCcEEEecCCcc
Q 047644          147 RSITLEVLRLRSYFALTLPPDGVCFPRLKTFHLMLQQ-PTNHLPHNLFSRCPCLQHLSLTVYFTAANPASNLIISSATLK  225 (314)
Q Consensus       147 ~c~~L~~L~L~~~~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~l~~ll~~cp~Le~L~L~~c~~~~~~~~~~~i~~~~Lk  225 (314)
                      .|.....++..+....+.|.....+++|++|+|.+.. ++.-. ...+.+.+.|+.|+|.++.. ..+........++|+
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~l-~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSGL-RFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSCC-CEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC-chhhccccccCcceeecccc-CCccccccccccccc
Confidence            3445556666666555666455677888888886543 32211 12356788999999988754 211011112456888


Q ss_pred             eEEEEeeeeCCCCCCCcceEEEEcCCccEEEeecccc
Q 047644          226 TFVLEVMYCSHSSAPNQHTVTIVAPNLEFLDITDDLA  262 (314)
Q Consensus       226 ~L~i~~~~c~~~~~~~~~~l~~~~p~L~~L~l~~~~~  262 (314)
                      .|+++   .+....-...  ....++|++|+++|...
T Consensus        84 ~L~Ls---~N~l~~l~~~--~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          84 RLNLS---FNALESLSWK--TVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             EEECC---SSCCSCCCST--TTCSCCCCEEECCSSCC
T ss_pred             ceecc---CCCCcccChh--hhccccccccccCCCcc
Confidence            88886   3332221111  12456788999887654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.13  E-value=0.0067  Score=45.57  Aligned_cols=111  Identities=13%  Similarity=0.071  Sum_probs=47.7

Q ss_pred             CeeEEEEEeccCCCcchHHHHHHHHHh-CCceEEEEEecCCCc---cccCCcccccCCeeEEEEcceeeccc-----CCC
Q 047644           97 SVEKFSLRCSYLRSLGMFDYWVSSAIS-RNVREIEIDLRDHER---IPLPASIYRSITLEVLRLRSYFALTL-----PPD  167 (314)
Q Consensus        97 ~l~~l~l~~~~~~~~~~~~~w~~~~~~-~~l~~L~l~~~~~~~---~~l~~~~~~c~~L~~L~L~~~~~~~~-----~~~  167 (314)
                      .++.+.|........+.+...+..... ..+++|+|+.+..+.   ..+...+..+++|++|.|+++...+.     ...
T Consensus        16 ~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~a   95 (167)
T d1pgva_          16 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS   95 (167)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred             CCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHH
Confidence            366666542222333333333222221 246666655443221   12222233345666666665533211     001


Q ss_pred             CcCCCCcceEEeeeEEc---CCC---cHHHHhcCCccccceeeeee
Q 047644          168 GVCFPRLKTFHLMLQQP---TNH---LPHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       168 ~~~~~~L~~L~L~~~~~---~~~---~l~~ll~~cp~Le~L~L~~c  207 (314)
                      ....+.|++|+|.+..+   +++   .+...+..++.|++|.+.+.
T Consensus        96 L~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          96 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            22345566666655433   111   24445555666666655544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.32  E-value=0.00089  Score=50.56  Aligned_cols=38  Identities=11%  Similarity=-0.024  Sum_probs=21.0

Q ss_pred             CCCcceEEeeeEE-cCCCcHHH---HhcCCccccceeeeeee
Q 047644          171 FPRLKTFHLMLQQ-PTNHLPHN---LFSRCPCLQHLSLTVYF  208 (314)
Q Consensus       171 ~~~L~~L~L~~~~-~~~~~l~~---ll~~cp~Le~L~L~~c~  208 (314)
                      .|.|++|+|.++. ++++++..   .+..++.|++|+|++|.
T Consensus        16 ~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~   57 (166)
T d1io0a_          16 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR   57 (166)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC
T ss_pred             CCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc
Confidence            4556666665542 34444333   33466677777777664

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=89.58  E-value=0.021  Score=42.56  Aligned_cols=112  Identities=13%  Similarity=0.071  Sum_probs=52.9

Q ss_pred             CCeeEEEEEeccCCCcchHHHHHHHHHh-CCceEEEEEecCCCcc---ccCCcccccCCeeEEEEcceeeccc-----CC
Q 047644           96 SSVEKFSLRCSYLRSLGMFDYWVSSAIS-RNVREIEIDLRDHERI---PLPASIYRSITLEVLRLRSYFALTL-----PP  166 (314)
Q Consensus        96 ~~l~~l~l~~~~~~~~~~~~~w~~~~~~-~~l~~L~l~~~~~~~~---~l~~~~~~c~~L~~L~L~~~~~~~~-----~~  166 (314)
                      +.|+.+.+........+.+..+...... ..+++|+++.+..+..   .+...+..+++|+.+.++++...+.     ..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            3477777653333334444444433322 3567776665532211   2222233346666666666533211     01


Q ss_pred             CCcCCCCcceEEeee--EEcCCCc---HHHHhcCCccccceeeeee
Q 047644          167 DGVCFPRLKTFHLML--QQPTNHL---PHNLFSRCPCLQHLSLTVY  207 (314)
Q Consensus       167 ~~~~~~~L~~L~L~~--~~~~~~~---l~~ll~~cp~Le~L~L~~c  207 (314)
                      .....++|+.++|..  ..+++++   +...+..|+.|++|.+...
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            223456666555532  2333332   4444556666666666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=0.0073  Score=45.11  Aligned_cols=80  Identities=14%  Similarity=0.144  Sum_probs=42.9

Q ss_pred             CCceEEEEEecCCCccc-cCCcccccCCeeEEEEcceeecccCC-CCcCCCCcceEEeeeEEcCC------CcHHHHhcC
Q 047644          124 RNVREIEIDLRDHERIP-LPASIYRSITLEVLRLRSYFALTLPP-DGVCFPRLKTFHLMLQQPTN------HLPHNLFSR  195 (314)
Q Consensus       124 ~~l~~L~l~~~~~~~~~-l~~~~~~c~~L~~L~L~~~~~~~~~~-~~~~~~~L~~L~L~~~~~~~------~~l~~ll~~  195 (314)
                      ..+++|+|+.+...... ++..+..+++|+.|.|+++...+.++ ......+|+.|+|.+-.+..      .....+++.
T Consensus        65 ~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~  144 (162)
T d1koha1          65 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRER  144 (162)
T ss_dssp             TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTT
T ss_pred             CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHH
Confidence            35677776665433221 22333446777777777765444331 12244566777776654421      133456667


Q ss_pred             Ccccccee
Q 047644          196 CPCLQHLS  203 (314)
Q Consensus       196 cp~Le~L~  203 (314)
                      +|.|+.|+
T Consensus       145 ~P~L~~LD  152 (162)
T d1koha1         145 FPKLLRLD  152 (162)
T ss_dssp             STTCCEET
T ss_pred             CCCCCEEC
Confidence            77777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.73  E-value=0.015  Score=43.29  Aligned_cols=40  Identities=18%  Similarity=0.174  Sum_probs=20.8

Q ss_pred             CCCCcceEEeeeEEc-CCCcHHHHhcCCccccceeeeeeec
Q 047644          170 CFPRLKTFHLMLQQP-TNHLPHNLFSRCPCLQHLSLTVYFT  209 (314)
Q Consensus       170 ~~~~L~~L~L~~~~~-~~~~l~~ll~~cp~Le~L~L~~c~~  209 (314)
                      .+++|+.|+|++..+ +-..+...+..||.|+.|+|++...
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i  103 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNEL  103 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCcc
Confidence            355555555555555 2233444445556666665555543