Citrus Sinensis ID: 047650

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70-----
Protein Sequence
CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELRG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccccEEEEEccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccEEEEEEEcccHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
CLDELLKIVEcknrknqnfptfndveptivRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELRG
Flexible Loop (DISEMBL)
CLDELLKIvecknrknqnfptfndveptiVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVvanisgwelrg
Low Complexity Region (SEG)
CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELRG
Disordered region (IsUnstruct)
****LLKIVECKNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWE***
Disordered Region (DISOPRED)
CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEF*****KKVQNWRQALKVVANISGWELRG
Disordered Region (DISEMBL)
CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELRG
Disordered Region (DISPRO)
CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISG*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	75	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.933	0.061	0.478	1e-13
O82500	1095	Putative disease resistan	no	no	0.906	0.062	0.408	6e-07
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.96	0.055	0.386	2e-06
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.973	0.206	0.324	2e-05

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CL+EL+KI+ECK R  Q   P F DV+P+ VR Q  +F +AF +HE  +KD+++ +Q WR
Sbjct: 83  CLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWR 142

Query: 60  QALKVVANISG 70
            AL   AN+ G
Sbjct: 143 IALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 3/71 (4%)

Query: 1   CLDELLKIVECKNRKN-QNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL++I++CK  +  +  P F  V+P+ +RKQT  FG +F   E       ++  NWR
Sbjct: 81  CLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFL--ETCCGKTEERQHNWR 138

Query: 60  QALKVVANISG 70
           +AL   ANI G
Sbjct: 139 RALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 3/75 (4%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CL+EL++I +C    NQ   P F  V+ + V+KQT  FG+ F +  +   ++ K  Q+W+
Sbjct: 81  CLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVFEETCKAKSEDEK--QSWK 138

Query: 60  QALKVVANISGWELR 74
           QAL  VA ++G++LR
Sbjct: 139 QALAAVAVMAGYDLR 153

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL +I +C N+   N  P F  + P+ V +    FG+ F   +E +K++ ++ Q W+
Sbjct: 83  CLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGGFGDTFRVLKEKYKNDPERTQKWQ 142

Query: 60  QALKVVANISGWEL 73
           +AL+ +  + G  L
Sbjct: 143 EALESIPKLKGLRL 156

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
224130518	1121	tir-nbs-lrr resistance protein [Populus	0.986	0.066	0.586	1e-17
105922482	1121	TIR-NBS-LRR type disease resistance prot	0.986	0.066	0.586	2e-17
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.946	0.059	0.597	2e-17
37781280	1136	nematode resistance-like protein [Solanu	0.946	0.062	0.608	6e-17
37781356	1136	nematode resistance-like protein [Solanu	0.946	0.062	0.608	7e-17
37781226	1136	nematode resistance protein [Solanum tub	0.946	0.062	0.608	1e-16
357486467	200	TMV resistance protein N [Medicago trunc	0.96	0.36	0.561	2e-16
255547494	1082	TMV resistance protein N, putative [Rici	0.96	0.066	0.575	2e-16
147780473	435	hypothetical protein VITISV_034310 [Viti	0.986	0.170	0.56	2e-16
298204574	868	unnamed protein product [Vitis vinifera]	0.986	0.085	0.506	3e-16

>gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CL+EL+KIVEC  +  Q   P F DV+P+ VR QT    +AFA HEE FKDNI+KVQ WR
Sbjct: 85  CLNELVKIVECMKQGRQTVIPVFYDVDPSEVRNQTGRLQQAFADHEEVFKDNIEKVQTWR 144

Query: 60  QALKVVANISGWELR 74
            A+K+VAN+SGW+L+
Sbjct: 145 IAMKLVANLSGWDLQ 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|105922482|gb|ABF81419.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CL+EL+KIVEC  +  Q   P F DV+P+ VR QT    +AFA HEE FKDNI+KVQ WR
Sbjct: 85  CLNELVKIVECMKQGRQTVIPVFYDVDPSEVRNQTGRLQQAFADHEEVFKDNIEKVQTWR 144

Query: 60  QALKVVANISGWELR 74
            A+K+VAN+SGW+L+
Sbjct: 145 IAMKLVANLSGWDLQ 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 1/72 (1%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL KI+EC ++K Q  FP F DVEP+ VRKQT +F + FAKHEE +++NI KV+ WR
Sbjct: 97  CLDELAKIIECGDQKGQKIFPVFYDVEPSDVRKQTGSFQDDFAKHEEKYRENIDKVRKWR 156

Query: 60  QALKVVANISGW 71
            A+  VAN+SGW
Sbjct: 157 AAMTQVANLSGW 168

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781280|gb|AAP44392.1| nematode resistance-like protein [Solanum tuberosum]

 Score = 91.3 bits (225), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 3/74 (4%)

Query: 1   CLDELLKIVECKNRKNQ-NFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL KI+ECKN K Q   P F DV+P+ VRKQ + FGEAF+KHE  F+++  KVQ WR
Sbjct: 89  CLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQED--KVQKWR 146

Query: 60  QALKVVANISGWEL 73
            AL+  ANISGW+L
Sbjct: 147 AALEEAANISGWDL 160

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781356|gb|AAP44393.1| nematode resistance-like protein [Solanum tuberosum]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 3/74 (4%)

Query: 1   CLDELLKIVECKNRKNQ-NFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL KI+ECKN K Q   P F DV+P+ VRKQ + FGEAF+KHE  F+++  KVQ WR
Sbjct: 89  CLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQED--KVQKWR 146

Query: 60  QALKVVANISGWEL 73
            AL+  ANISGW+L
Sbjct: 147 AALEEAANISGWDL 160

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781226|gb|AAP44390.1| nematode resistance protein [Solanum tuberosum]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/74 (60%), Positives = 55/74 (74%), Gaps = 3/74 (4%)

Query: 1   CLDELLKIVECKNRKNQ-NFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL KI+ECKN K Q   P F DV+P+ VRKQ + FGEAF+KHE  F+++  KVQ WR
Sbjct: 89  CLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARFQED--KVQKWR 146

Query: 60  QALKVVANISGWEL 73
            AL+  ANISGW+L
Sbjct: 147 AALEEAANISGWDL 160

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357486467|ref|XP_003613521.1| TMV resistance protein N [Medicago truncatula] gi|355514856|gb|AES96479.1| TMV resistance protein N [Medicago truncatula]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 1   CLDELLKIVECKNRKNQNF-PTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL+KI+ECK  K Q   P F D++P+ VR QT ++ EAF KHE+ F+  ++KVQ WR
Sbjct: 85  CLDELVKILECKKMKGQILLPIFYDIDPSHVRNQTGSYAEAFVKHEKQFQGKLEKVQTWR 144

Query: 60  QALKVVANISGWE 72
            AL+  ANISGWE
Sbjct: 145 HALREAANISGWE 157

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547494|ref|XP_002514804.1| TMV resistance protein N, putative [Ricinus communis] gi|223545855|gb|EEF47358.1| TMV resistance protein N, putative [Ricinus communis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/73 (57%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL++I EC   K QN  P F  V+P  VRKQT  FGE+FAK+E+ FK+NI KVQ WR
Sbjct: 82  CLDELVEIFECMKTKGQNVLPVFYSVDPAEVRKQTGRFGESFAKYEKLFKNNIGKVQQWR 141

Query: 60  QALKVVANISGWE 72
            A   +AN+SGW+
Sbjct: 142 AAATGMANLSGWD 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780473|emb|CAN66817.1| hypothetical protein VITISV_034310 [Vitis vinifera]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/75 (56%), Positives = 54/75 (72%), Gaps = 1/75 (1%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CL+EL+KI+ECK  + Q   P F +V+P+ VRK    FGEA AKHEE FK+N+ +VQ WR
Sbjct: 181 CLEELVKILECKESRGQRVLPIFYNVDPSDVRKHMGKFGEALAKHEENFKENMGRVQIWR 240

Query: 60  QALKVVANISGWELR 74
            AL  VAN+SGW+ R
Sbjct: 241 DALTQVANLSGWDSR 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204574|emb|CBI23849.3| unnamed protein product [Vitis vinifera]

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/75 (50%), Positives = 56/75 (74%), Gaps = 1/75 (1%)

Query: 1   CLDELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL KI++C K  ++  FP F +V+P+ VRKQ  ++G AF KHE+ ++DN++KV  WR
Sbjct: 90  CLDELTKILQCVKEGRHTAFPVFYNVDPSHVRKQEGSYGVAFTKHEQVYRDNMEKVVEWR 149

Query: 60  QALKVVANISGWELR 74
           +AL V +N+SGW+ R
Sbjct: 150 KALTVASNLSGWDSR 164

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	75
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.933	0.061	0.478	2.1e-12
TAIR|locus:2161513	780	AT5G17970 [Arabidopsis thalian	0.906	0.087	0.464	7.1e-09
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.96	0.060	0.394	9.5e-09
TAIR|locus:2032713	363	AT1G72900 [Arabidopsis thalian	0.92	0.190	0.444	1.5e-08
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.92	0.250	0.422	2.2e-08
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.893	0.051	0.459	2.8e-08
TAIR|locus:2130270	1449	RPP5 "RECOGNITION OF PERONOSPO	0.973	0.050	0.460	3.2e-08
TAIR|locus:2160487	1085	AT5G41550 [Arabidopsis thalian	0.906	0.062	0.464	3.7e-08
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.92	0.185	0.422	4.4e-08
TAIR|locus:1009023443	213	AT5G38344 [Arabidopsis thalian	0.893	0.314	0.416	5.4e-08

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 179 (68.1 bits), Expect = 2.1e-12, P = 2.1e-12
 Identities = 34/71 (47%), Positives = 48/71 (67%)

Query:     1 CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
             CL+EL+KI+ECK R  Q   P F DV+P+ VR Q  +F +AF +HE  +KD+++ +Q WR
Sbjct:    83 CLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWR 142

Query:    60 QALKVVANISG 70
              AL   AN+ G
Sbjct:   143 IALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2161513 AT5G17970 [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 33/71 (46%), Positives = 45/71 (63%)

Query:     1 CLDELLKIVECKNRKNQNF-PTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
             CLDEL++I+EC+    +   P F DV+P+ VRKQT  FG+AF K  +   +  +  Q WR
Sbjct:    86 CLDELVEIMECREVVGKTLVPIFYDVDPSSVRKQTGDFGKAFDKICDVRTEEER--QRWR 143

Query:    60 QALKVVANISG 70
             QAL  V NI+G
Sbjct:   144 QALTNVGNIAG 154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 9.5e-09, P = 9.5e-09
 Identities = 30/76 (39%), Positives = 51/76 (67%)

Query:     1 CLDELLKIVEC-KNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNW 58
             CLDEL+ I++  KN  +   FP F  V+P+ +R Q  ++ ++F+KH+      + K+++W
Sbjct:    88 CLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKN--SHPLNKLKDW 145

Query:    59 RQALKVVANISGWELR 74
             R+AL  VANISGW+++
Sbjct:   146 REALTKVANISGWDIK 161

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032713 AT1G72900 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 32/72 (44%), Positives = 42/72 (58%)

Query:     1 CLDELLKIVECKNRKNQN--FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNW 58
             CLDEL+KI++ +  K      P F  V P  +R+Q     E F KHE   KD ++KV  W
Sbjct:    81 CLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHEAREKD-LEKVLKW 139

Query:    59 RQALKVVANISG 70
             RQAL  +A+ISG
Sbjct:   140 RQALAALADISG 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 30/71 (42%), Positives = 46/71 (64%)

Query:     1 CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
             CLDEL+KI++ +N+ +    P F  V+P  +R+Q     E F KHE   +D+ +KV +WR
Sbjct:    80 CLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDH-EKVASWR 138

Query:    60 QALKVVANISG 70
             +AL  +A+ISG
Sbjct:   139 RALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.8e-08, P = 2.8e-08
 Identities = 34/74 (45%), Positives = 47/74 (63%)

Query:     1 CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQ 60
             CLDELLKI+EC   K+   P F +V+P+ VR+Q  +FGE    H +  K+   KV  W++
Sbjct:    89 CLDELLKIMECN--KDTIVPIFYEVDPSDVRRQRGSFGEDVESHSD--KE---KVGKWKE 141

Query:    61 ALKVVANISGWELR 74
             ALK +A ISG + R
Sbjct:   142 ALKKLAAISGEDSR 155

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2130270 RPP5 "RECOGNITION OF PERONOSPORA PARASITICA 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 35/76 (46%), Positives = 46/76 (60%)

Query:     1 CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIK--KVQN 57
             CL+EL++I +C N   Q   P F DV+P+ VRKQT  FG+ F K  E  KD     + Q 
Sbjct:    82 CLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGEFGKVFEKTCEVSKDKQPGDQKQR 141

Query:    58 WRQALKVVANISGWEL 73
             W QAL  +ANI+G +L
Sbjct:   142 WVQALTDIANIAGEDL 157

GO:0000166 "nucleotide binding" evidence=IEA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP

TAIR|locus:2160487 AT5G41550 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 33/71 (46%), Positives = 43/71 (60%)

Query:     1 CLDELLKIVECKNRKNQNFPT-FNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
             CLDEL++I++CK  + Q   T F DV+P+ VRKQ   FG  F K  E   + +K  Q W 
Sbjct:    83 CLDELVEILKCKEDQGQIVMTIFYDVDPSSVRKQKGDFGSTFMKTCEGKSEEVK--QRWT 140

Query:    60 QALKVVANISG 70
             +AL  VANI G
Sbjct:   141 KALTHVANIKG 151

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 4.4e-08, P = 4.4e-08
 Identities = 30/71 (42%), Positives = 46/71 (64%)

Query:     1 CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
             CLDEL+KI++ +N+ +    P F  V+P  +R+Q     E F KHE   +D+ +KV +WR
Sbjct:    80 CLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHEAREEDH-EKVASWR 138

Query:    60 QALKVVANISG 70
             +AL  +A+ISG
Sbjct:   139 RALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:1009023443 AT5G38344 [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 30/72 (41%), Positives = 47/72 (65%)

Query:     1 CLDELLKIVECKNRKNQNFPT-FNDVEPTIVRKQTTTFGEAFAKH-EEFFKDNIKKVQNW 58
             CL+EL++I++C+ +  Q   T F DV+PT V+KQT  FG+ F K  +   K+ IK+   W
Sbjct:   130 CLNELVEIMKCREQLGQTVMTIFYDVDPTDVKKQTGDFGKVFKKTCKGKPKEEIKR---W 186

Query:    59 RQALKVVANISG 70
             ++ L+ VA I+G
Sbjct:   187 QKVLEDVATIAG 198

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	75
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-13
pfam01582	135	pfam01582, TIR, TIR domain	8e-10
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	5e-08

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 63.0 bits (153), Expect = 2e-13
 Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 3/72 (4%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CL+ELL+IV CK    Q   P F  ++P+ VRKQT  FGEAF K  +   ++ K    W+
Sbjct: 83  CLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKTEDEKIQ--WK 140

Query: 60  QALKVVANISGW 71
           QAL  VANI G+
Sbjct: 141 QALTDVANILGY 152

syringae 6; Provisional. Length = 1153

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score = 50.7 bits (122), Expect = 8e-10
 Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)

Query: 1   CLDELLKIVECKNRKNQN---FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQN 57
           CLDEL++IV+C           P F  V+P+ VR Q+  FG+AF K  ++  D   K++ 
Sbjct: 70  CLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWSGDKEDKIRF 129

Query: 58  WRQALK 63
           W++AL 
Sbjct: 130 WKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score = 46.2 bits (110), Expect = 5e-08
 Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 5/71 (7%)

Query: 1   CLDELLKIVECKNRKNQNF--PTFNDVEPTIVRKQTTTFGEAFAKHE-EFFKDNIKKVQN 57
           CLDEL+  +E    +      P F +V P+ VRKQ   F + F K+  ++ +D  +K Q 
Sbjct: 72  CLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNYLKWPED--EKEQF 129

Query: 58  WRQALKVVANI 68
           W++AL  V + 
Sbjct: 130 WKKALYAVPSK 140

Length = 140

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.95
PLN03194	187	putative disease resistance protein; Provisional	99.87
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.04
smart00255	140	TIR Toll - interleukin 1 - resistance.	98.56
KOG2792	280	consensus Putative cytochrome C oxidase assembly p	82.63

>PLN03210 Resistant to P

Probab=99.95  E-value=1.5e-28  Score=194.86  Aligned_cols=72  Identities=43%  Similarity=0.696  Sum_probs=68.1

Q ss_pred             ChHHHHHHHhh-hcCCCeeeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccccccc
Q 047650            1 CLDELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELR   74 (75)
Q Consensus         1 CLdEL~~I~e~-~~~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G~~~~   74 (75)
                      |||||++|+|| ++.+++|+||||+|+|||||+|+|.||++|.+++++.  +.+++++||+||++||+++||+++
T Consensus        83 cl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g~~~~  155 (1153)
T PLN03210         83 CLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILGYHSQ  155 (1153)
T ss_pred             HHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCceecC
Confidence            99999999999 9999999999999999999999999999999988754  478999999999999999999875

syringae 6; Provisional

>PLN03194 putative disease resistance protein; Provisional

Probab=99.87  E-value=6.5e-23  Score=137.34  Aligned_cols=58  Identities=29%  Similarity=0.450  Sum_probs=51.1

Q ss_pred             ChHHHHHHHhhhcCCCeeeeeeeecccCcceec-cchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccccccc
Q 047650            1 CLDELLKIVECKNRKNQNFPTFNDVEPTIVRKQ-TTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELR   74 (75)
Q Consensus         1 CLdEL~~I~e~~~~~~~ViPVFY~V~ps~Vr~q-~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G~~~~   74 (75)
                      |||||++|++|   +..||||||+|+|||||+| .|.             .+.+++++||.||++||+++||+++
T Consensus        98 CLdEL~~I~e~---~~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194         98 CLHELALIMES---KKRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHHHHHHHHc---CCEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence            99999999998   3479999999999999997 543             1368999999999999999999764

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.04  E-value=5.1e-11  Score=75.22  Aligned_cols=63  Identities=27%  Similarity=0.369  Sum_probs=53.1

Q ss_pred             ChHHHHHHHhh-hcCC--CeeeeeeeecccCcce-eccchHHHHHHHhHHhhccC--HHHHHHHHHHHH
Q 047650            1 CLDELLKIVEC-KNRK--NQNFPTFNDVEPTIVR-KQTTTFGEAFAKHEEFFKDN--IKKVQNWRQALK   63 (75)
Q Consensus         1 CLdEL~~I~e~-~~~~--~~ViPVFY~V~ps~Vr-~q~g~f~~~f~~~~~~~~~~--~e~v~~W~~AL~   63 (75)
                      |+.||..++++ .+.+  ++|+||||+|.|++|+ .+++.|+..|..+......+  .++...|++++.
T Consensus        72 c~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~  140 (141)
T PF01582_consen   72 CLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY  140 (141)
T ss_dssp             HHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence            89999999999 6654  8999999999999999 79999999998877655433  468899999975

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=98.56  E-value=2.4e-07  Score=57.36  Aligned_cols=66  Identities=32%  Similarity=0.507  Sum_probs=54.0

Q ss_pred             ChHHHHHHHhh-hc-CCCeeeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhc
Q 047650            1 CLDELLKIVEC-KN-RKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVAN   67 (75)
Q Consensus         1 CLdEL~~I~e~-~~-~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~   67 (75)
                      |..|+..+.++ .. ....||||+|+..|+++..+.+.++..+..+...+..+..+ ..|+.++..+++
T Consensus        72 ~~~E~~~a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       72 CLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHHHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            78899999998 44 67899999999999999999999999998875445433333 789999988764

>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]

Probab=82.63  E-value=1.3  Score=31.68  Aligned_cols=27  Identities=33%  Similarity=0.525  Sum_probs=21.8

Q ss_pred             ChHHHHHHHhh-----hcCCCeeeeeeeeccc
Q 047650            1 CLDELLKIVEC-----KNRKNQNFPTFNDVEP   27 (75)
Q Consensus         1 CLdEL~~I~e~-----~~~~~~ViPVFY~V~p   27 (75)
                      |=|||.||..-     .+.+..++|||--|||
T Consensus       155 CPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDP  186 (280)
T KOG2792|consen  155 CPDELEKMSAVVDEIEAKPGLPPVPLFISVDP  186 (280)
T ss_pred             ChHHHHHHHHHHHHHhccCCCCccceEEEeCc
Confidence            78899887764     3556778899999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	75
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		2e-07
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		3e-07

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 1   CLDELLKIVECKNRKNQN--FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNW 58
           CL EL +IV  +    +    P F  V+P+ VR QT  + +AF KH   F  + + +QNW
Sbjct: 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--DGQTIQNW 164
Query: 59  RQALKVVANISGWEL 73
           + ALK V ++ GW +
Sbjct: 165 KDALKKVGDLKGWHI 179

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL+ I++ + + +    P F  VEP  VR QT    E F KH    +++ +KV  WR
Sbjct: 80  CLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS--REDPEKVLKWR 137
Query: 60  QALKVVANISG 70
           QAL   A +SG
Sbjct: 138 QALTNFAQLSG 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	75
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	3e-31
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	5e-30
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	6e-20

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  106 bits (266), Expect = 3e-31
 Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 3/76 (3%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
           CLDEL+ I++ + + +    P F  VEP  VR QT    E F KH    +++ +KV  WR
Sbjct: 80  CLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS--REDPEKVLKWR 137

Query: 60  QALKVVANISGWELRG 75
           QAL   A +SG     
Sbjct: 138 QALTNFAQLSGDCSGD 153

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  103 bits (260), Expect = 5e-30
 Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 4/76 (5%)

Query: 1   CLDELLKIVECKNRKNQN--FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNW 58
           CL EL +IV  +    +    P F  V+P+ VR QT  + +AF KH   F      +QNW
Sbjct: 107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQ--TIQNW 164

Query: 59  RQALKVVANISGWELR 74
           + ALK V ++ GW + 
Sbjct: 165 KDALKKVGDLKGWHIG 180

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score = 76.6 bits (189), Expect = 6e-20
 Identities = 8/63 (12%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 1   CLDELLKIVECKNRKNQN-FPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWR 59
              EL  + + ++       P ++ V    V   + T  +  A +      ++ ++    
Sbjct: 91  PQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS--TKSVDEIVADL 148

Query: 60  QAL 62
            A+
Sbjct: 149 MAI 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	75
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	99.97
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	99.97
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	99.44
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	98.27
2js7_A	160	Myeloid differentiation primary response protein M	96.04
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	95.71
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	95.43
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	94.89
3u43_A	94	Colicin-E2 immunity protein; protein-protein compl	84.05

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=99.97  E-value=9.5e-33  Score=182.39  Aligned_cols=72  Identities=42%  Similarity=0.596  Sum_probs=68.9

Q ss_pred             ChHHHHHHHhh-hcCCCeeeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccccccc
Q 047650            1 CLDELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELR   74 (75)
Q Consensus         1 CLdEL~~I~e~-~~~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G~~~~   74 (75)
                      ||+||++|++| ++++++||||||+|+||+||+|+|+||++|.+|+++  .+.+++++||.||++||+++||++.
T Consensus        80 Cl~EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           80 CLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            99999999999 999999999999999999999999999999999987  4689999999999999999999874

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=99.97  E-value=2.1e-32  Score=184.30  Aligned_cols=72  Identities=39%  Similarity=0.709  Sum_probs=68.0

Q ss_pred             ChHHHHHHHhh-hc-CCCeeeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHHhhcccccccc
Q 047650            1 CLDELLKIVEC-KN-RKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKVVANISGWELR   74 (75)
Q Consensus         1 CLdEL~~I~e~-~~-~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~va~~~G~~~~   74 (75)
                      ||+||++|++| ++ .+++||||||+|+||+||+|+|.||++|.+|++++.  .+++++||.||++||+++||+++
T Consensus       107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~  180 (204)
T 3ozi_A          107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIG  180 (204)
T ss_dssp             HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEEC
T ss_pred             HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecC
Confidence            99999999999 65 689999999999999999999999999999998874  78999999999999999999986

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=99.44  E-value=5.3e-15  Score=94.24  Aligned_cols=59  Identities=17%  Similarity=0.195  Sum_probs=47.7

Q ss_pred             ChHHHHHHHhh-hcCCCeeeeeeeecccCcceeccchHHHHHHHhHHhhccCHHHHHHHHHHHHH
Q 047650            1 CLDELLKIVEC-KNRKNQNFPTFNDVEPTIVRKQTTTFGEAFAKHEEFFKDNIKKVQNWRQALKV   64 (75)
Q Consensus         1 CLdEL~~I~e~-~~~~~~ViPVFY~V~ps~Vr~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL~~   64 (75)
                      |++||..|++| ...++.||||||+|+|++||+|+|.||++|......     +.+.++-+.|.+
T Consensus        91 c~~El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~~-----~~~~~ia~~l~~  150 (154)
T 3h16_A           91 PQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTST-----KSVDEIVADLMA  150 (154)
T ss_dssp             CHHHHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETTT-----SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcCc-----ccHHHHHHHHHH
Confidence            99999999999 888899999999999999999999999988755432     234444444444

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=98.27  E-value=1.2e-07  Score=59.99  Aligned_cols=59  Identities=15%  Similarity=0.200  Sum_probs=38.4

Q ss_pred             ChHHHHHHHhh-hcCCCeeeeeeeecccCcc----eeccchHHHHHHHhHHhhccCHHHHHHHHHHH
Q 047650            1 CLDELLKIVEC-KNRKNQNFPTFNDVEPTIV----RKQTTTFGEAFAKHEEFFKDNIKKVQNWRQAL   62 (75)
Q Consensus         1 CLdEL~~I~e~-~~~~~~ViPVFY~V~ps~V----r~q~g~f~~~f~~~~~~~~~~~e~v~~W~~AL   62 (75)
                      |+.||..++.+ ......||||||+|+++++    |.......   ..+...|....+.|.+|+.||
T Consensus        82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~---~~~d~~f~~l~~~v~~~~~~~  145 (146)
T 3ub2_A           82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDG---RGPDGGFRQVKEAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEET---TSGGGGHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeec---cChHhhHHHHHHHHHHHHHhc
Confidence            89999999998 4444477899999995554    55432211   122233332357899999886

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=96.04  E-value=0.001  Score=42.20  Aligned_cols=27  Identities=7%  Similarity=-0.010  Sum_probs=22.5

Q ss_pred             ChHHHHHHHhh--hcCCCeeeeeeeeccc
Q 047650            1 CLDELLKIVEC--KNRKNQNFPTFNDVEP   27 (75)
Q Consensus         1 CLdEL~~I~e~--~~~~~~ViPVFY~V~p   27 (75)
                      |+.||..++++  +..++.||||||+.-+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            89999999998  4556799999998643

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=95.71  E-value=0.0028  Score=40.99  Aligned_cols=29  Identities=7%  Similarity=0.037  Sum_probs=19.8

Q ss_pred             ChHHHHHHHhh--hcCCCeeeeeeee-cccCc
Q 047650            1 CLDELLKIVEC--KNRKNQNFPTFND-VEPTI   29 (75)
Q Consensus         1 CLdEL~~I~e~--~~~~~~ViPVFY~-V~ps~   29 (75)
                      |+.||..++.+  +.+++.||||||+ +.+..
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~  139 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYC  139 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCGGG
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChHH
Confidence            89999999976  6677899999996 54443

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=95.43  E-value=0.0014  Score=40.97  Aligned_cols=30  Identities=10%  Similarity=-0.014  Sum_probs=23.9

Q ss_pred             ChHHHHHHHh-h-hcCCCeeeeeeee-cccCcc
Q 047650            1 CLDELLKIVE-C-KNRKNQNFPTFND-VEPTIV   30 (75)
Q Consensus         1 CLdEL~~I~e-~-~~~~~~ViPVFY~-V~ps~V   30 (75)
                      |+.||..++. + +.+++.||||||+ +++..+
T Consensus        78 c~~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~  110 (149)
T 1fyx_A           78 XKYELDFSHFRLFDENNDAAILILLEPIEKKAI  110 (149)
T ss_dssp             HHHHSCCSCCTTCGGGTTCCEEEESSCCCTTTS
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChhhc
Confidence            8899999986 4 7778899999995 666544

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=94.89  E-value=0.0094  Score=37.68  Aligned_cols=28  Identities=7%  Similarity=-0.199  Sum_probs=23.8

Q ss_pred             ChHHHHHHHhh--hcCCCeeeeeeeecccC
Q 047650            1 CLDELLKIVEC--KNRKNQNFPTFNDVEPT   28 (75)
Q Consensus         1 CLdEL~~I~e~--~~~~~~ViPVFY~V~ps   28 (75)
                      |+.||..++.+  ..+++.||||||.-.|.
T Consensus        86 c~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           86 SIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence            88999999998  66788999999985554

>3u43_A Colicin-E2 immunity protein; protein-protein complex, DNAse, high affinity, protein bindi; 1.72A {Escherichia coli} PDB: 2no8_A 2wpt_A

Probab=84.05  E-value=0.31  Score=28.83  Aligned_cols=16  Identities=38%  Similarity=0.927  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHhhccccc
Q 047650           52 IKKVQNWRQALKVVANISGW   71 (75)
Q Consensus        52 ~e~v~~W~~AL~~va~~~G~   71 (75)
                      .++|.+||+|    -.++||
T Consensus        68 v~~IKeWRa~----nG~pgF   83 (94)
T 3u43_A           68 VKEIKEWRAA----NGKSGF   83 (94)
T ss_dssp             HHHHHHHHHH----TTCCCC
T ss_pred             HHHHHHHHHH----cCCccc
Confidence            3679999998    677775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	75
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	80.07

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.07  E-value=0.67  Score=24.04  Aligned_cols=18  Identities=22%  Similarity=0.440  Sum_probs=15.8

Q ss_pred             cCHHHHHHHHHHHHHhhc
Q 047650           50 DNIKKVQNWRQALKVVAN   67 (75)
Q Consensus        50 ~~~e~v~~W~~AL~~va~   67 (75)
                      ++.+..++|..||..+|+
T Consensus        82 ~s~~e~~~Wi~aL~~Aa~   99 (99)
T d2coca1          82 SSAELQQQWLETLSTAAH   99 (99)
T ss_dssp             SSHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhcC
Confidence            578899999999999874