Citrus Sinensis ID: 047667

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKDR
Secondary Structure (PSIPRED)
cccccccccccccccEEEcccccccccccHHHHHHHHHHccccEEEccccccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEccccHHHcHHHHHHHHHHHccccEEEccHHccccccccHHHHHHHHHccEEEEEEcccccccHHHHHHHHHHHHHHHcccEEEEEEEEccHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mastsiqkvshgkydvflsfrgedtrkSFTGHLYAALKNKgiyvfrddkelekggsisPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVecknrkdqilpifydveptvvRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKsgwelkdr
Flexible Loop (DISEMBL)
mastsiqkvshgkyDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKtvanksgwelkdr
Low Complexity Region (SEG)
MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKDR
Disordered region (IsUnstruct)
***********GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTV***********
Disordered Region (DISOPRED)
************KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEA*****EKVQTWRDALKTVANKSGWELKD*
Disordered Region (DISEMBL)
*********SHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKDR
Disordered Region (DISPRO)
*********SHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGW*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKDR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.881	0.123	0.591	1e-44
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.887	0.109	0.503	3e-32
O82500	1095	Putative disease resistan	no	no	0.868	0.126	0.461	7e-31
Q9FHE9	354	Protein PHLOEM PROTEIN 2-	no	no	0.975	0.440	0.362	2e-24
Q9SYC9	571	Vesicle-associated protei	no	no	0.943	0.264	0.350	3e-22
Q9FHE8	392	Protein PHLOEM PROTEIN 2-	no	no	0.962	0.392	0.368	2e-21
Q9C5Q9	411	Protein PHLOEM PROTEIN 2-	no	no	0.831	0.323	0.382	9e-19
Q9FL92	1372	Probable WRKY transcripti	no	no	0.5	0.058	0.352	1e-07
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.762	0.064	0.268	3e-06

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  178 bits (452), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 1/142 (0%)

Query: 14  YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
           YDVFLSFRGEDTRK+FT HLY  L +KGI  F+DDK LE G +I  EL KAIEES+ +I+
Sbjct: 12  YDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIV 71

Query: 74  VLSKNYASSTWCLDELAKIVECKNR-KDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           V S+NYA+S WCL+EL KI+ECK R K  ++PIFYDV+P+ VR Q  SF +AF +HE  +
Sbjct: 72  VFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKY 131

Query: 133 RNNVEKVQTWRDALKTVANKSG 154
           +++VE +Q WR AL   AN  G
Sbjct: 132 KDDVEGIQRWRIALNEAANLKG 153

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  137 bits (345), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 74/147 (50%), Positives = 102/147 (69%), Gaps = 5/147 (3%)

Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
           +YDVF SFRGED R SF  HL   L+ K I  F DD E+E+  SI PELL AI+ESRI+I
Sbjct: 11  RYDVFPSFRGEDVRDSFLSHLLKELRGKAI-TFIDD-EIERSRSIGPELLSAIKESRIAI 68

Query: 73  IVLSKNYASSTWCLDELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
           ++ SKNYASSTWCL+EL +I +C  N    ++PIF+ V+ + V+KQT  FG+ F +  +A
Sbjct: 69  VIFSKNYASSTWCLNELVEIHKCYTNLNQMVIPIFFHVDASEVKKQTGEFGKVFEETCKA 128

Query: 132 FRNNVEKVQTWRDALKTVANKSGWELK 158
            ++  EK Q+W+ AL  VA  +G++L+
Sbjct: 129 -KSEDEK-QSWKQALAAVAVMAGYDLR 153

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  132 bits (333), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 93/143 (65%), Gaps = 4/143 (2%)

Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
           +YDVF SFRGED R +F  HL    ++KGI  FRDD  +++  +I  EL  AI ES+IS+
Sbjct: 10  RYDVFPSFRGEDVRNNFLSHLLKEFESKGIVTFRDD-HIKRSHTIGHELRAAIRESKISV 68

Query: 73  IVLSKNYASSTWCLDELAKIVECKNRKD-QILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
           ++ S+NYASS+WCLDEL +I++CK  +  +++P+FY V+P+ +RKQT  FG +F   E  
Sbjct: 69  VLFSENYASSSWCLDELIEIMKCKEEQGLKVMPVFYKVDPSDIRKQTGKFGMSFL--ETC 126

Query: 132 FRNNVEKVQTWRDALKTVANKSG 154
                E+   WR AL   AN  G
Sbjct: 127 CGKTEERQHNWRRALTDAANILG 149

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE9|P2A08_ARATH Protein PHLOEM PROTEIN 2-LIKE A8 OS=Arabidopsis thaliana GN=PP2A8 PE=2 SV=1

 Score =  111 bits (278), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 95/160 (59%), Gaps = 4/160 (2%)

Query: 2   ASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPEL 61
           AS+S++    G   VF++FRG+D R  F   L  A++   I VF D  E+   G+    L
Sbjct: 3   ASSSVRPTPTGP-QVFINFRGKDLRNGFLSFLEPAMREANINVFIDKDEVV--GTDLVNL 59

Query: 62  LKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKD-QILPIFYDVEPTVVRKQTAS 120
              I+ESR+++++ SK+Y SS WCLDELA+I +C N+     +PIFY + P+ V +    
Sbjct: 60  FVRIQESRVAVVIFSKDYTSSEWCLDELAEIKDCINQGGLNAIPIFYKLAPSSVLELKGG 119

Query: 121 FGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKDR 160
           FG+ F   +E ++N+ E+ Q W++AL+++    G  L ++
Sbjct: 120 FGDTFRVLKEKYKNDPERTQKWQEALESIPKLKGLRLAEK 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 94/154 (61%), Gaps = 3/154 (1%)

Query: 2   ASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPEL 61
           +ST    ++  +Y VF++FRG++ R SF G L  A++ + I VF D+ EL +G +++  L
Sbjct: 346 SSTDDHGITLPQYQVFINFRGDELRNSFVGFLVKAMRLEKINVFTDEVEL-RGTNLN-YL 403

Query: 62  LKAIEESRISIIVLSKNYASSTWCLDELAKIVE-CKNRKDQILPIFYDVEPTVVRKQTAS 120
            + IEESR+++ + S+ Y  S WCLDEL K+ E  +  K  ++P+FY +  T  ++   +
Sbjct: 404 FRRIEESRVAVAIFSERYTESCWCLDELVKMKEQMEQGKLVVVPVFYRLNATACKRFMGA 463

Query: 121 FGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSG 154
           FG+     E  +R+  E++Q W++AL +V +  G
Sbjct: 464 FGDNLRNLEWEYRSEPERIQKWKEALSSVFSNIG 497

May play a role in vesicle trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHE8|P2A06_ARATH Protein PHLOEM PROTEIN 2-LIKE A6 OS=Arabidopsis thaliana GN=PP2A6 PE=2 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 60/163 (36%), Positives = 90/163 (55%), Gaps = 9/163 (5%)

Query: 2   ASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPEL 61
           +S+S+ K +     VF+ FRG D RK F   L  AL+   I VF D+ E    GS    L
Sbjct: 3   SSSSVVKPTPTGPQVFICFRGADVRKHFISFLVPALREANINVFIDENEFL--GSEMANL 60

Query: 62  LKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQ----ILPIFYDVEPTVVRKQ 117
           L  IEES +++++ S ++  S  CL+ELAKI   K RKDQ    ++PIFY V+P+ V+  
Sbjct: 61  LTRIEESELALVIFSVDFTRSHRCLNELAKI---KERKDQGRLIVIPIFYKVKPSAVKFL 117

Query: 118 TASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKDR 160
              FG+ F   E   R+ +   Q W++AL+++    G  L ++
Sbjct: 118 EGKFGDNFRALERNNRHMLPITQKWKEALESIPGSIGMPLAEQ 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q9|P2A05_ARATH Protein PHLOEM PROTEIN 2-LIKE A5 OS=Arabidopsis thaliana GN=PP2A5 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 82/136 (60%), Gaps = 3/136 (2%)

Query: 16  VFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVL 75
           VF++FRG+D RK F   L  ALK + I VF D++E E+G  +   L   I ES+I++++ 
Sbjct: 24  VFINFRGKDLRKGFMSFLKPALKKEKINVFIDEQE-ERGKYLI-SLFDTIGESKIALVIF 81

Query: 76  SKNYASSTWCLDELAKIVECKNR-KDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRN 134
           S+ Y  S WC+DEL KI E  ++ +  I+PIFY ++  VV+  T  FG+ F    + ++ 
Sbjct: 82  SEGYCESHWCMDELVKIKEYMDQNRLIIIPIFYRLDLDVVKDLTGKFGDNFWDLVDKYQP 141

Query: 135 NVEKVQTWRDALKTVA 150
             +K+  W +AL +V 
Sbjct: 142 EPKKLHKWTEALFSVC 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 8/88 (9%)

Query: 23  EDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASS 82
           E+ R SF  HL  AL+ KG+    +D  ++   S+S E    +E +R+S+++L  N   S
Sbjct: 14  EEVRYSFVSHLSKALQRKGV----NDVFIDSDDSLSNESQSMVERARVSVMILPGNRTVS 69

Query: 83  TWCLDELAKIVECKNRKDQ-ILPIFYDV 109
              LD+L K+++C+  KDQ ++P+ Y V
Sbjct: 70  ---LDKLVKVLDCQKNKDQVVVPVLYGV 94

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 27/149 (18%)

Query: 14  YDVFLSF-RGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
           YDV + + R + + + F  HL A+L  +GI V+    E++           A+ + R+ I
Sbjct: 668 YDVVIRYGRADISNEDFISHLRASLCRRGISVYEKFNEVD-----------ALPKCRVLI 716

Query: 73  IVLSKNYASSTWCLDELAKIVECKNRKDQIL-PIFYDVEPTVVRKQTASFGEAFAKHEEA 131
           IVL+  Y  S      L  I+E ++ +D+++ PIFY + P      + ++ E F   +E 
Sbjct: 717 IVLTSTYVPSN-----LLNILEHQHTEDRVVYPIFYRLSPYDFVCNSKNY-ERFYLQDEP 770

Query: 132 FRNNVEKVQTWRDALKTVANKSGWELKDR 160
                   + W+ ALK +    G+ L D+
Sbjct: 771 --------KKWQAALKEITQMPGYTLTDK 791

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
105922482	1121	TIR-NBS-LRR type disease resistance prot	1.0	0.142	0.614	6e-54
224130518	1121	tir-nbs-lrr resistance protein [Populus	1.0	0.142	0.614	7e-54
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.918	0.122	0.662	2e-51
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.987	0.127	0.625	1e-50
359493273	1233	PREDICTED: TMV resistance protein N-like	0.987	0.128	0.625	1e-50
224144414	520	tir-nbs-lrr resistance protein [Populus	0.912	0.280	0.646	2e-49
302398863	909	HD domain class transcription factor [Ma	0.918	0.161	0.632	7e-49
224145716	532	tir-nbs-lrr resistance protein [Populus	0.912	0.274	0.639	1e-48
37781280	1136	nematode resistance-like protein [Solanu	0.9	0.126	0.639	1e-48
37781356	1136	nematode resistance-like protein [Solanu	0.9	0.126	0.639	2e-48

>gi|105922482|gb|ABF81419.1| TIR-NBS-LRR type disease resistance protein [Populus trichocarpa]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 127/161 (78%), Gaps = 1/161 (0%)

Query: 1   MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPE 60
           MA++  +  +  KYDVFLSFRGEDTRKSFT HLY AL ++G+  FRDD+ELE+G  IS E
Sbjct: 1   MAASYSRTTTRWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERGNEISRE 60

Query: 61  LLKAIEESRISIIVLSKNYASSTWCLDELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTA 119
           LL+AI++SR S+IV S+NY SSTWCL+EL KIVEC K  +  ++P+FYDV+P+ VR QT 
Sbjct: 61  LLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVECMKQGRQTVIPVFYDVDPSEVRNQTG 120

Query: 120 SFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKDR 160
              +AFA HEE F++N+EKVQTWR A+K VAN SGW+L+DR
Sbjct: 121 RLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130518|ref|XP_002328629.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222838611|gb|EEE76976.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 127/161 (78%), Gaps = 1/161 (0%)

Query: 1   MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPE 60
           MA++  +  +  KYDVFLSFRGEDTRKSFT HLY AL ++G+  FRDD+ELE+G  IS E
Sbjct: 1   MAASYSRTTTRWKYDVFLSFRGEDTRKSFTDHLYTALCHRGVITFRDDQELERGNEISRE 60

Query: 61  LLKAIEESRISIIVLSKNYASSTWCLDELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTA 119
           LL+AI++SR S+IV S+NY SSTWCL+EL KIVEC K  +  ++P+FYDV+P+ VR QT 
Sbjct: 61  LLQAIQDSRFSVIVFSRNYTSSTWCLNELVKIVECMKQGRQTVIPVFYDVDPSEVRNQTG 120

Query: 120 SFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKDR 160
              +AFA HEE F++N+EKVQTWR A+K VAN SGW+L+DR
Sbjct: 121 RLQQAFADHEEVFKDNIEKVQTWRIAMKLVANLSGWDLQDR 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/148 (66%), Positives = 120/148 (81%), Gaps = 1/148 (0%)

Query: 14  YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
           Y VFLSFRGEDTRK+FTGHLY+ L    + VF+DD++LEKG  I+PELLKAIE+S  S+I
Sbjct: 26  YHVFLSFRGEDTRKNFTGHLYSGLSRFKLLVFKDDEKLEKGKVIAPELLKAIEQSMFSVI 85

Query: 74  VLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           VLSKNYASS+WCLDELAKI+EC ++K Q I P+FYDVEP+ VRKQT SF + FAKHEE +
Sbjct: 86  VLSKNYASSSWCLDELAKIIECGDQKGQKIFPVFYDVEPSDVRKQTGSFQDDFAKHEEKY 145

Query: 133 RNNVEKVQTWRDALKTVANKSGWELKDR 160
           R N++KV+ WR A+  VAN SGW  K+R
Sbjct: 146 RENIDKVRKWRAAMTQVANLSGWTSKNR 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 121/163 (74%), Gaps = 5/163 (3%)

Query: 1   MASTSIQK---VSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSI 57
           MAS+ I +    SH  YDVFLSFRGEDTR+SFT HLYAAL  KG+  FRDD+ELE+G  I
Sbjct: 1   MASSMINQKDSASHWNYDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEI 60

Query: 58  SPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVEPTVVRK 116
           +PELLKAIEESRIS++V SKNYA S WC+DEL KI+EC   K Q +LP+FYDV+PT VRK
Sbjct: 61  APELLKAIEESRISVVVFSKNYARSGWCMDELVKIIECMKAKGQTVLPVFYDVDPTHVRK 120

Query: 117 QTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKD 159
           QT SF EAFA H E     +E+ + WR AL   AN SGW L++
Sbjct: 121 QTGSFMEAFASHGED-TEVIERAKRWRAALTQAANLSGWHLQN 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 121/163 (74%), Gaps = 5/163 (3%)

Query: 1   MASTSIQK---VSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSI 57
           MAS+ I +    SH  YDVFLSFRGEDTR+SFT HLYAAL  KG+  FRDD+ELE+G  I
Sbjct: 1   MASSMINQKDSASHWNYDVFLSFRGEDTRRSFTDHLYAALVEKGVRTFRDDEELERGKEI 60

Query: 58  SPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVEPTVVRK 116
           +PELLKAIEESRIS++V SKNYA S WC+DEL KI+EC   K Q +LP+FYDV+PT VRK
Sbjct: 61  APELLKAIEESRISVVVFSKNYARSGWCMDELVKIIECMKAKGQTVLPVFYDVDPTHVRK 120

Query: 117 QTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKD 159
           QT SF EAFA H E     +E+ + WR AL   AN SGW L++
Sbjct: 121 QTGSFMEAFASHGED-TEVIERAKRWRAALTQAANLSGWHLQN 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144414|ref|XP_002325282.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862157|gb|EEE99663.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 112/147 (76%), Gaps = 1/147 (0%)

Query: 14  YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
           YDVFLSFRGEDTRK+FT HLY AL N GI+ FRDD EL +G  ISP+LLKAIE SRISI+
Sbjct: 1   YDVFLSFRGEDTRKNFTDHLYTALGNAGIHTFRDDNELPRGEEISPQLLKAIEGSRISIV 60

Query: 74  VLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           V SK+YASS WCLDEL KI+EC+ +  Q +LPIFYD EP+ VRKQT S+ +AF +HEE F
Sbjct: 61  VFSKHYASSRWCLDELVKIIECRQKIGQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEERF 120

Query: 133 RNNVEKVQTWRDALKTVANKSGWELKD 159
           +  +EKV  WR AL    N SGW L +
Sbjct: 121 KEEMEKVNKWRGALAEAGNLSGWGLHN 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398863|gb|ADL36726.1| HD domain class transcription factor [Malus x domestica]

 Score =  198 bits (503), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 112/147 (76%)

Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
           KYDVFLSFRGEDTRK FT HLY  LK + I  FRDD EL++G SI PELL AI++SR +I
Sbjct: 23  KYDVFLSFRGEDTRKGFTDHLYDKLKWRAIKTFRDDPELQRGTSIHPELLMAIQQSRFAI 82

Query: 73  IVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           +V+S NYA+STWCL EL KI++  +  + ILP+FYDV+P+ VR Q  SF EAF KHEE F
Sbjct: 83  VVISPNYAASTWCLVELTKILQSMDESETILPVFYDVDPSDVRHQKGSFAEAFFKHEEKF 142

Query: 133 RNNVEKVQTWRDALKTVANKSGWELKD 159
           R ++EKVQ WRDAL  VAN +GW  KD
Sbjct: 143 REDIEKVQGWRDALTKVANLAGWTSKD 169

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145716|ref|XP_002325741.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|224145719|ref|XP_002325742.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862616|gb|EEF00123.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222862617|gb|EEF00124.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 111/147 (75%), Gaps = 1/147 (0%)

Query: 14  YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
           YDVFLSFRG+DTRK+FT HLY AL   GI+ FRDD EL +G  ISP+L+KAIE SRISI+
Sbjct: 10  YDVFLSFRGKDTRKNFTDHLYTALIQAGIHTFRDDNELPRGEEISPQLVKAIEGSRISIV 69

Query: 74  VLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           V SK YASS WCLDEL KIVEC+ + DQ +LPIFYD EP+ VRKQT S+ +AF +HEE F
Sbjct: 70  VFSKQYASSRWCLDELVKIVECRQKIDQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEEHF 129

Query: 133 RNNVEKVQTWRDALKTVANKSGWELKD 159
           +  +EKV  WR AL    N SGW L +
Sbjct: 130 KEEMEKVNKWRGALAEAGNLSGWGLNN 156

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781280|gb|AAP44392.1| nematode resistance-like protein [Solanum tuberosum]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 117/147 (79%), Gaps = 3/147 (2%)

Query: 14  YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
           YDVFLSFRGED RK+F  HLY AL+ K I  F+DD++LEKG  ISPEL+ +IEESRI++I
Sbjct: 18  YDVFLSFRGEDVRKTFVDHLYLALQQKCINTFKDDEKLEKGKFISPELMSSIEESRIALI 77

Query: 74  VLSKNYASSTWCLDELAKIVECKNRKDQI-LPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           + SKNYA+STWCLDEL KI+ECKN K QI +P+FYDV+P+ VRKQ + FGEAF+KHE  F
Sbjct: 78  IFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARF 137

Query: 133 RNNVEKVQTWRDALKTVANKSGWELKD 159
           +   +KVQ WR AL+  AN SGW+L +
Sbjct: 138 QE--DKVQKWRAALEEAANISGWDLPN 162

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37781356|gb|AAP44393.1| nematode resistance-like protein [Solanum tuberosum]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 94/147 (63%), Positives = 117/147 (79%), Gaps = 3/147 (2%)

Query: 14  YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
           YDVFLSFRGED RK+F  HLY AL+ K I  F+DD++LEKG  ISPEL+ +IEESRI++I
Sbjct: 18  YDVFLSFRGEDVRKTFVDHLYLALQQKCINTFKDDEKLEKGKFISPELVSSIEESRIALI 77

Query: 74  VLSKNYASSTWCLDELAKIVECKNRKDQI-LPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           + SKNYA+STWCLDEL KI+ECKN K QI +P+FYDV+P+ VRKQ + FGEAF+KHE  F
Sbjct: 78  IFSKNYANSTWCLDELTKIMECKNVKGQIVVPVFYDVDPSTVRKQKSIFGEAFSKHEARF 137

Query: 133 RNNVEKVQTWRDALKTVANKSGWELKD 159
           +   +KVQ WR AL+  AN SGW+L +
Sbjct: 138 QE--DKVQKWRAALEEAANISGWDLPN 162

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.95	0.132	0.574	2.4e-41
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.912	0.112	0.516	1.3e-34
TAIR|locus:2032723	275	AT1G72920 [Arabidopsis thalian	0.881	0.512	0.524	3.6e-34
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.906	0.121	0.516	4.9e-34
TAIR|locus:2032713	363	AT1G72900 [Arabidopsis thalian	0.875	0.385	0.524	5.8e-34
TAIR|locus:2032753	371	AT1G72940 [Arabidopsis thalian	0.881	0.380	0.517	7.4e-34
TAIR|locus:2032597	379	AT1G72950 [Arabidopsis thalian	0.906	0.382	0.496	1.2e-33
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.962	0.111	0.493	5.8e-33
TAIR|locus:2032602	1163	AT1G72860 [Arabidopsis thalian	0.918	0.126	0.5	7.1e-33
TAIR|locus:2032733	176	TIR "toll/interleukin-1 recept	0.875	0.795	0.517	2.3e-32

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 450 (163.5 bits), Expect = 2.4e-41, P = 2.4e-41
 Identities = 89/155 (57%), Positives = 112/155 (72%)

Query:     1 MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPE 60
             MAS+S    S   YDVFLSFRGEDTRK+FT HLY  L +KGI  F+DDK LE G +I  E
Sbjct:     1 MASSSSS--SRWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGE 58

Query:    61 LLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNR-KDQILPIFYDVEPTVVRKQTA 119
             L KAIEES+ +I+V S+NYA+S WCL+EL KI+ECK R K  ++PIFYDV+P+ VR Q  
Sbjct:    59 LCKAIEESQFAIVVFSENYATSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKE 118

Query:   120 SFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSG 154
             SF +AF +HE  ++++VE +Q WR AL   AN  G
Sbjct:   119 SFAKAFEEHETKYKDDVEGIQRWRIALNEAANLKG 153

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 79/153 (51%), Positives = 106/153 (69%)

Query:     2 ASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPEL 61
             +S+S    +  K DVF+SFRGED RK+F  HL+      GI  FRDD +L++G SISPEL
Sbjct:     6 SSSSSSSSTVWKTDVFVSFRGEDVRKTFVSHLFCEFDRMGIKAFRDDLDLQRGKSISPEL 65

Query:    62 LKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVRKQTASF 121
             + AI+ SR +I+V+S+NYA+S+WCLDEL KI+EC   KD I+PIFY+V+P+ VR+Q  SF
Sbjct:    66 IDAIKGSRFAIVVVSRNYAASSWCLDELLKIMECN--KDTIVPIFYEVDPSDVRRQRGSF 123

Query:   122 GEAFAKHEEAFRNNVEKVQTWRDALKTVANKSG 154
             GE    H +      EKV  W++ALK +A  SG
Sbjct:   124 GEDVESHSDK-----EKVGKWKEALKKLAAISG 151

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032723 AT1G72920 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 75/143 (52%), Positives = 100/143 (69%)

Query:    13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
             KYDVFLSFRG DTR++F   LY  L  + I  F+DDKELE G  ISPEL +AIEES+ ++
Sbjct:     8 KYDVFLSFRGLDTRRNFISFLYKELVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    73 IVLSKNYASSTWCLDELAKIVECKNRKD-QILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
             +V+S NYA+S WCLDEL KI++ +N+    ++PIFY V+P  +R+Q     E F KHE A
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHE-A 126

Query:   132 FRNNVEKVQTWRDALKTVANKSG 154
                + EKV +WR AL ++A+ SG
Sbjct:   127 REEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 4.9e-34, P = 4.9e-34
 Identities = 77/149 (51%), Positives = 105/149 (70%)

Query:    14 YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
             YDVF+SFRG D RK+F  HLY +L+  GI  F DD EL++G  ISPELL AIE S+I I+
Sbjct:    17 YDVFVSFRGADVRKNFLSHLYDSLRRCGISTFMDDVELQRGEYISPELLNAIETSKILIV 76

Query:    74 VLSKNYASSTWCLDELAKIVEC-KNRKDQ-ILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
             VL+K+YASS WCLDEL  I++  KN     + PIF  V+P+ +R Q  S+ ++F+KH+ +
Sbjct:    77 VLTKDYASSAWCLDELVHIMKSHKNNPSHMVFPIFLYVDPSDIRWQQGSYAKSFSKHKNS 136

Query:   132 FRNNVEKVQTWRDALKTVANKSGWELKDR 160
                N  K++ WR+AL  VAN SGW++K+R
Sbjct:   137 HPLN--KLKDWREALTKVANISGWDIKNR 163

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032713 AT1G72900 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 75/143 (52%), Positives = 96/143 (67%)

Query:    14 YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
             YDVFLSFRG DTR+ F   LY  L  + I  F+DDKELE G  ISPEL+ AIE+SR +++
Sbjct:    10 YDVFLSFRGPDTRRKFISFLYKELVGRDIRTFKDDKELENGQMISPELILAIEDSRFAVV 69

Query:    74 VLSKNYASSTWCLDELAKIVECKNRKDQI--LPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
             V+S NYA+S+WCLDEL KI++ +  K  I  +PIFY V P  +R+Q     E F KHE A
Sbjct:    70 VVSVNYAASSWCLDELVKIMDIQKNKGSITVMPIFYGVNPCHLRRQIGDVAEQFKKHE-A 128

Query:   132 FRNNVEKVQTWRDALKTVANKSG 154
                ++EKV  WR AL  +A+ SG
Sbjct:   129 REKDLEKVLKWRQALAALADISG 151

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2032753 AT1G72940 [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 74/143 (51%), Positives = 99/143 (69%)

Query:    13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
             KYDVFLSFRG DTR++F   LY     + I  F+DDKELE G  ISPEL +AIEES+ ++
Sbjct:     8 KYDVFLSFRGVDTRRNFISFLYKEFVRRKIRTFKDDKELENGRRISPELKRAIEESKFAV 67

Query:    73 IVLSKNYASSTWCLDELAKIVECKNRKD-QILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
             +V+S NYA+S WCLDEL KI++ +N+    ++PIFY V+P  +R+Q     E F KHE A
Sbjct:    68 VVVSVNYAASPWCLDELVKIMDFENKGSITVMPIFYGVDPCHLRRQIGDVAEQFKKHE-A 126

Query:   132 FRNNVEKVQTWRDALKTVANKSG 154
                + EKV +WR AL ++A+ SG
Sbjct:   127 REEDHEKVASWRRALTSLASISG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006914 "autophagy" evidence=RCA

TAIR|locus:2032597 AT1G72950 [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 75/151 (49%), Positives = 103/151 (68%)

Query:    13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
             K+DVFLSFRG DTR+SF   LY  L  + I  F+DDKEL+ G  I+PEL++AIE SR ++
Sbjct:    10 KFDVFLSFRGLDTRRSFISFLYKELIRRNIRTFKDDKELKNGRRITPELIRAIEGSRFAV 69

Query:    73 IVLSKNYASSTWCLDELAKIVECKNRKD-QILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
             +V+S NYA+S WCL+EL KI++ +N    +++PIFY V+P  VR+Q     E F KHE  
Sbjct:    70 VVVSVNYAASRWCLEELVKIMDFENMGSLKVMPIFYGVDPCHVRRQIGEVAEQFKKHEG- 128

Query:   132 FRNNVEKVQTWRDALKTVANKSG---WELKD 159
              R + EKV +WR AL  +A+ SG   W+ +D
Sbjct:   129 -REDHEKVLSWRQALTNLASISGDCSWKWED 158

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 373 (136.4 bits), Expect = 5.8e-33, P = 5.8e-33
 Identities = 77/156 (49%), Positives = 104/156 (66%)

Query:     1 MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPE 60
             M S  + K    KYDVFLSFRG DTR +F  HLY ALK+K + VFRD++ +E+G  IS  
Sbjct:     1 MESGVVSKPHRLKYDVFLSFRGADTRDNFGDHLYKALKDK-VRVFRDNEGMERGDEISSS 59

Query:    61 LLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVEPTVVRKQTA 119
             L   +E+S  S+IV+S+NY+ S WCLDELA + + K+  D+ ILPIFY V+P+ VRKQ+ 
Sbjct:    60 LKAGMEDSAASVIVISRNYSGSRWCLDELAMLCKMKSSLDRRILPIFYHVDPSHVRKQSD 119

Query:   120 SFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGW 155
                + F +H+  F    EKVQ WR+AL  V N +G+
Sbjct:   120 HIKKDFEEHQVRFSEEKEKVQEWREALTLVGNLAGY 155

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2032602 AT1G72860 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 7.1e-33, P = 7.1e-33
 Identities = 78/156 (50%), Positives = 111/156 (71%)

Query:     1 MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPE 60
             MAS+S   +   KYDVFLSFRGEDTRK+   HL+  L +KG+  F+DDK+LE G SIS E
Sbjct:     1 MASSSSSPI--WKYDVFLSFRGEDTRKNIVSHLHKQLVDKGVVTFKDDKKLELGDSISEE 58

Query:    61 LLKAIEESRISIIVLSKNYASSTWCLDELAKIVEC--KNRKDQILPIFYDVEPTVVRKQT 118
             + +AI+ S  ++++LS+NYASS+WCLDEL  +++   KN K +++PIFY V+P+ VR QT
Sbjct:    59 ISRAIQNSTYALVILSENYASSSWCLDELRMVMDLHLKN-KIKVVPIFYGVDPSHVRHQT 117

Query:   119 ASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSG 154
              SF   F K++++   N  KV TWR+AL  +A+ +G
Sbjct:   118 GSF--TFDKYQDSKMPN--KVTTWREALTQIASLAG 149

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2032733 TIR "toll/interleukin-1 receptor-like" [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 74/143 (51%), Positives = 91/143 (63%)

Query:    13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
             KYDVFLSFRG DTR +F   LY  L  + I  F+DDKELE G   SPEL   IE SR ++
Sbjct:     8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67

Query:    73 IVLSKNYASSTWCLDELAKIVECKNRKD-QILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
             +V+S+NYA+S+WCLDEL  I++ + +    ++PIFY VEP  VR QT    E F KH  A
Sbjct:    68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH--A 125

Query:   132 FRNNVEKVQTWRDALKTVANKSG 154
              R + EKV  WR AL   A  SG
Sbjct:   126 SREDPEKVLKWRQALTNFAQLSG 148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam01582	135	pfam01582, TIR, TIR domain	2e-45
smart00255	140	smart00255, TIR, Toll - interleukin 1 - resistance	4e-44
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-42
PLN03194	187	PLN03194, PLN03194, putative disease resistance pr	8e-18
pfam13676	102	pfam13676, TIR_2, TIR domain	1e-12

>gnl|CDD|216585 pfam01582, TIR, TIR domain

 Score =  145 bits (367), Expect = 2e-45
 Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)

Query: 16  VFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVL 75
           VF+SF G+D R +F  HL   L+ KGI +  DD++   G SI   L +AIE+SR +I++ 
Sbjct: 1   VFVSFSGKDDRDTFVSHLLKELEEKGIKLCIDDRDELPGESILENLFEAIEKSRRAIVIF 60

Query: 76  SKNYASSTWCLDELAKIVECKNRKDQ---ILPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           S NYASS WCLDEL +IV+C         ILPIFY V+P+ VR Q+  FG+AF K  +  
Sbjct: 61  SSNYASSEWCLDELVEIVKCALEGGGKKVILPIFYKVDPSDVRPQSGKFGKAFLKTLKWS 120

Query: 133 RNNVEKVQTWRDALK 147
            +  +K++ W+ AL 
Sbjct: 121 GDKEDKIRFWKKALY 135

The Toll/interleukin-1 receptor (TIR) homology domain is an intracellular signalling domain found in MyD88, interleukin 1 receptor and the Toll receptor. It contains three highly-conserved regions, and mediates protein-protein interactions between the Toll-like receptors (TLRs) and signal-transduction components. TIR-like motifs are also found in plant proteins thought to be involved in resistance to disease. When activated, TIR domains recruit cytoplasmic adaptor proteins MyD88 and TOLLIP (Toll interacting protein). In turn, these associate with various kinases to set off signalling cascades. Length = 135

>gnl|CDD|214587 smart00255, TIR, Toll - interleukin 1 - resistance

 Score =  141 bits (358), Expect = 4e-44
 Identities = 64/143 (44%), Positives = 85/143 (59%), Gaps = 6/143 (4%)

Query: 13  KYDVFLSFRG-EDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRIS 71
           +YDVF+S+ G ED R  F  HL   L+  G+ VF DD E   GG    E+ +AIE+SRI+
Sbjct: 1   EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEP--GGGDLEEIDEAIEKSRIA 58

Query: 72  IIVLSKNYASSTWCLDELAKIVECKNRKDQ--ILPIFYDVEPTVVRKQTASFGEAFAKHE 129
           I+VLS NYA S WCLDEL   +E    +    ++PIFY+V P+ VRKQ   F + F K+ 
Sbjct: 59  IVVLSPNYAESEWCLDELVAALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVFKKNY 118

Query: 130 EAFRNNVEKVQTWRDALKTVANK 152
             +    EK Q W+ AL  V +K
Sbjct: 119 LKW-PEDEKEQFWKKALYAVPSK 140

Length = 140

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  149 bits (377), Expect = 2e-42
 Identities = 68/146 (46%), Positives = 93/146 (63%), Gaps = 4/146 (2%)

Query: 14  YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISII 73
           YDVF SF GED R +F  H    L  K I  F+D+ E+E+  S+ PEL +AI +SRI+++
Sbjct: 13  YDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVV 71

Query: 74  VLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVEPTVVRKQTASFGEAFAKHEEAF 132
           V SKNYASS+WCL+EL +IV CK    Q ++P+FY ++P+ VRKQT  FGEAF K     
Sbjct: 72  VFSKNYASSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEK--TCQ 129

Query: 133 RNNVEKVQTWRDALKTVANKSGWELK 158
               ++   W+ AL  VAN  G+  +
Sbjct: 130 NKTEDEKIQWKQALTDVANILGYHSQ 155

syringae 6; Provisional. Length = 1153

>gnl|CDD|215626 PLN03194, PLN03194, putative disease resistance protein; Provisional

 Score = 75.6 bits (186), Expect = 8e-18
 Identities = 36/101 (35%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 15  DVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIV 74
           DVF++ RG DT+++    LY  L    +  F D+K ++ G  +  ++  AI   ++ + V
Sbjct: 28  DVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAV 87

Query: 75  LSKNYASSTWCLDELAKIVECKNRKDQILPIFYDVEPTVVR 115
            S  Y  S +CL ELA I+E K R   ++PIF DV+P+ +R
Sbjct: 88  FSPRYCESYFCLHELALIMESKKR---VIPIFCDVKPSQLR 125

Length = 187

>gnl|CDD|222311 pfam13676, TIR_2, TIR domain

 Score = 60.3 bits (147), Expect = 1e-12
 Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 6/93 (6%)

Query: 16  VFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVL 75
           VF+S+   D  + +   L  AL+  GI V+ D  ++  G     E+ +A+  + + +++L
Sbjct: 1   VFISYASAD--REWAEWLADALEAAGIRVWLD-WDIPPGEDWRDEIEEALRSADVVLVLL 57

Query: 76  SKNYASSTWCLDELAKIVECKNRKDQILPIFYD 108
           S  Y +S WC  E         R  +++P+  +
Sbjct: 58  SPAYLASPWCRAEWG---AALERGKRLIPVRLE 87

This is a family of bacterial Toll-like receptors. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PLN03194	187	putative disease resistance protein; Provisional	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF01582	141	TIR: TIR domain; InterPro: IPR000157 In Drosophila	99.94
smart00255	140	TIR Toll - interleukin 1 - resistance.	99.94
PF13676	102	TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_	99.83
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.07
PF08937	130	DUF1863: MTH538 TIR-like domain (DUF1863); InterPr	98.98
PF08357	150	SEFIR: SEFIR domain; InterPro: IPR013568 This doma	98.28
PF10137	125	TIR-like: Predicted nucleotide-binding protein con	97.73
PF05014	113	Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransfer	94.73
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	93.94
PF13271	83	DUF4062: Domain of unknown function (DUF4062)	93.5
COG4271	233	Predicted nucleotide-binding protein containing TI	93.23
cd00860	91	ThrRS_anticodon ThrRS Threonyl-anticodon binding d	87.64
PF14359	92	DUF4406: Domain of unknown function (DUF4406)	84.79
COG4916	329	Uncharacterized protein containing a TIR (Toll-Int	83.17
cd00738	94	HGTP_anticodon HGTP anticodon binding domain, as f	81.05

>PLN03194 putative disease resistance protein; Provisional

Probab=100.00  E-value=6.3e-41  Score=248.54  Aligned_cols=138  Identities=29%  Similarity=0.514  Sum_probs=125.8

Q ss_pred             CCCCCCCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHH
Q 047667            5 SIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTW   84 (160)
Q Consensus         5 ss~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~w   84 (160)
                      +++++..+.|||||||++.|.|..|+.+|+.+|+++||++|+|+.++.+|+.+.+.|.+||++|++.|+|+|++|+.|.|
T Consensus        18 ~~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~W   97 (187)
T PLN03194         18 PSSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYF   97 (187)
T ss_pred             ccCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchh
Confidence            34445567799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCccccEEeecCchhhhcc-cchhHHHHHHHHHhccCChHHHHHHHHHHHHhhcccceeec
Q 047667           85 CLDELAKIVECKNRKDQILPIFYDVEPTVVRKQ-TASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELK  158 (160)
Q Consensus        85 c~~El~~~~~~~~~~~~iiPI~~~~~p~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i~~~~g~~~~  158 (160)
                      |++||..++++   +..||||||+++|++|+.| .|.             .+++++++||+||++|++++|+.++
T Consensus        98 CLdEL~~I~e~---~~~ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~  156 (187)
T PLN03194         98 CLHELALIMES---KKRVIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFD  156 (187)
T ss_pred             HHHHHHHHHHc---CCEEEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCC
Confidence            99999999984   5689999999999999996 332             2368999999999999999999875

>PLN03210 Resistant to P

Probab=100.00  E-value=1.8e-37  Score=284.57  Aligned_cols=154  Identities=45%  Similarity=0.786  Sum_probs=143.8

Q ss_pred             CCCCCCCCCCCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCc
Q 047667            1 MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYA   80 (160)
Q Consensus         1 m~s~ss~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~   80 (160)
                      ||+|||++ +.++|||||||+++|.|..|+.||+.+|.++||.+|.|+ ++..|+.+..++.+||++|++.|||+|++|+
T Consensus         1 ~~~~~~~~-~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya   78 (1153)
T PLN03210          1 MASSSSSS-RNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA   78 (1153)
T ss_pred             CCCCCCCC-CCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence            66666544 567899999999999999999999999999999999987 6999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHH-hhcCCccccEEeecCchhhhcccchhHHHHHHHHHhccCChHHHHHHHHHHHHhhcccceeec
Q 047667           81 SSTWCLDELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELK  158 (160)
Q Consensus        81 ~S~wc~~El~~~~~~-~~~~~~iiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i~~~~g~~~~  158 (160)
                      .|.||++||..+++| ++.+..|+||||+|+|++|++|+|.||++|.++++...  ++++++||+||++|++++|+++.
T Consensus        79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~~--~~~~~~w~~al~~~~~~~g~~~~  155 (1153)
T PLN03210         79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNKT--EDEKIQWKQALTDVANILGYHSQ  155 (1153)
T ss_pred             cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcccc--hhHHHHHHHHHHHHhCcCceecC
Confidence            999999999999999 88899999999999999999999999999999887644  68999999999999999999874

syringae 6; Provisional

>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo

Probab=99.94  E-value=2.7e-28  Score=175.82  Aligned_cols=132  Identities=36%  Similarity=0.609  Sum_probs=116.6

Q ss_pred             EEEeccc-CCCchhHHHHHHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHH
Q 047667           16 VFLSFRG-EDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKI   92 (160)
Q Consensus        16 VFISy~~-~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~   92 (160)
                      |||||++ +| +..|+++|..+|++.  |+++|++++|+.+|..+.++|.++|++|+++|+|+|++|+.|.||+.|+..|
T Consensus         1 vfisy~~~~d-~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a   79 (141)
T PF01582_consen    1 VFISYSGKDD-REWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEA   79 (141)
T ss_dssp             EEEEE-GHHG-HHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHH
T ss_pred             cEEEeCCCCc-HHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhh
Confidence            8999999 45 468899999999999  9999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-hhc--CCccccEEeecCchhhh-cccchhHHHHHHHHHhccCC--hHHHHHHHHHHHH
Q 047667           93 VEC-KNR--KDQILPIFYDVEPTVVR-KQTASFGEAFAKHEEAFRNN--VEKVQTWRDALKT  148 (160)
Q Consensus        93 ~~~-~~~--~~~iiPI~~~~~p~~v~-~~~~~~~~~~~~~~~~~~~~--~~~~~~W~~al~~  148 (160)
                      +++ ...  ...|+|+|+++.+.+++ .+.+.|+..+..+......+  .+....|++++.+
T Consensus        80 ~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~~  141 (141)
T PF01582_consen   80 LERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRYH  141 (141)
T ss_dssp             HHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHHH
T ss_pred             hhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhcC
Confidence            998 443  48999999999999999 69999999998888876654  5788999998763

In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....

>smart00255 TIR Toll - interleukin 1 - resistance

Probab=99.94  E-value=1e-25  Score=161.14  Aligned_cols=136  Identities=43%  Similarity=0.745  Sum_probs=114.8

Q ss_pred             ceeEEEecccC-CCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHH
Q 047667           13 KYDVFLSFRGE-DTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAK   91 (160)
Q Consensus        13 ~ydVFISy~~~-D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~   91 (160)
                      .|||||||+++ +....||.+|...|...|+.+|.|+..  +|.....+|.++|++|+++|+|+||+|+.|.||..|+..
T Consensus         1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~--~~~~~~~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~   78 (140)
T smart00255        1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFE--PGGGDLEEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA   78 (140)
T ss_pred             CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcc--cccchHHHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence            49999999983 334589999999999999999999753  343334499999999999999999999999999999999


Q ss_pred             HHHH--hhcCCccccEEeecCchhhhcccchhHHHHHHHHHhccCChHHHHHHHHHHHHhhc
Q 047667           92 IVEC--KNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVAN  151 (160)
Q Consensus        92 ~~~~--~~~~~~iiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i~~  151 (160)
                      ++++  .....+||||+++..|+.+..+.+.++..+...+..+..+..+ +.|+.++..+.+
T Consensus        79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~  139 (140)
T smart00255       79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS  139 (140)
T ss_pred             HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence            9987  3367899999999889889999999999998886666644333 799999988764

>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A

Probab=99.83  E-value=1.9e-21  Score=132.39  Aligned_cols=87  Identities=38%  Similarity=0.629  Sum_probs=76.8

Q ss_pred             EEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHHHHH
Q 047667           16 VFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKIVEC   95 (160)
Q Consensus        16 VFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~~   95 (160)
                      |||||+++|.  .+|..|...|++.|+++|+|. ++.+|+.+.+.|.++|++|+++|+++|++|.+|.||..|+..|.+ 
T Consensus         1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~-   76 (102)
T PF13676_consen    1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK-   76 (102)
T ss_dssp             EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred             eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence            8999999996  789999999999999999997 999999999999999999999999999999999999999999954 


Q ss_pred             hhcCCccccEEee
Q 047667           96 KNRKDQILPIFYD  108 (160)
Q Consensus        96 ~~~~~~iiPI~~~  108 (160)
                        .+++||||.++
T Consensus        77 --~~~~iipv~~~   87 (102)
T PF13676_consen   77 --RGKPIIPVRLD   87 (102)
T ss_dssp             --TSESEEEEECS
T ss_pred             --CCCEEEEEEEC
Confidence              56699999965

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.07  E-value=6.3e-10  Score=93.18  Aligned_cols=93  Identities=30%  Similarity=0.469  Sum_probs=77.1

Q ss_pred             CCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcC--------
Q 047667           10 SHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYAS--------   81 (160)
Q Consensus        10 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~--------   81 (160)
                      ..+..||||||++.-. ...+..|.-.|+-+||+||+|...+..|.. ...+.+.|..++.+|+|+||+.+.        
T Consensus       609 ~skq~DVFISYRRstG-nQLASLiKV~LQL~GyrVFIDVdKL~AGKF-dssLlkni~aAkhFiLVLtP~sLDr~lnD~nC  686 (832)
T KOG3678|consen  609 LSKQIDVFISYRRSTG-NQLASLIKVLLQLRGYRVFIDVDKLYAGKF-DSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC  686 (832)
T ss_pred             ccCCcceEEEeecccc-HHHHHHHHHHHHhcCceEEEehhhhhcccc-cHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence            3567999999987654 467888888899999999999988888864 578999999999999999999763        


Q ss_pred             CHHHHHHHHHHHHHhhcCCccccEEe
Q 047667           82 STWCLDELAKIVECKNRKDQILPIFY  107 (160)
Q Consensus        82 S~wc~~El~~~~~~~~~~~~iiPI~~  107 (160)
                      -.|+..|+..+++   .++.|||||-
T Consensus       687 eDWVHKEl~~Afe---~~KNIiPI~D  709 (832)
T KOG3678|consen  687 EDWVHKELKCAFE---HQKNIIPIFD  709 (832)
T ss_pred             HHHHHHHHHHHHH---hcCCeeeeec
Confidence            3477777777776   5889999984

>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments

Probab=98.98  E-value=7.7e-10  Score=78.63  Aligned_cols=91  Identities=21%  Similarity=0.398  Sum_probs=50.1

Q ss_pred             eeEEEecccCCCchhHHHHHHHHHhcC-------CceE----------EeeCCCccCCCCchHHHHHHHHhcceEEEEee
Q 047667           14 YDVFLSFRGEDTRKSFTGHLYAALKNK-------GIYV----------FRDDKELEKGGSISPELLKAIEESRISIIVLS   76 (160)
Q Consensus        14 ydVFISy~~~D~~~~fv~~L~~~L~~~-------g~~v----------~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS   76 (160)
                      |.|||||++.|.. ..+..|..-+...       .+..          .-+..+......+.+.|.+.|.+|+++||++|
T Consensus         1 ~~vFIS~~~~d~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig   79 (130)
T PF08937_consen    1 YKVFISYSHDDDD-WYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG   79 (130)
T ss_dssp             ----------THH--HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred             CCccccccccCcH-HHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence            5799999999862 2677777777763       2211          11222223345778899999999999999999


Q ss_pred             cCCcCCHHHHHHHHHHHHHhhcCCccccEEee
Q 047667           77 KNYASSTWCLDELAKIVECKNRKDQILPIFYD  108 (160)
Q Consensus        77 ~~~~~S~wc~~El~~~~~~~~~~~~iiPI~~~  108 (160)
                      ++...|.|+.+|+..++.   .++.||.|.+.
T Consensus        80 ~~T~~s~wV~~EI~~A~~---~~~~Ii~V~~~  108 (130)
T PF08937_consen   80 PNTAKSKWVNWEIEYALK---KGKPIIGVYLP  108 (130)
T ss_dssp             TT----HHHHHHHHHHTT---T---EEEEETT
T ss_pred             CCcccCcHHHHHHHHHHH---CCCCEEEEECC
Confidence            999999999999999987   67888888763

The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.

>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e

Probab=98.28  E-value=1.7e-06  Score=62.48  Aligned_cols=65  Identities=28%  Similarity=0.370  Sum_probs=54.8

Q ss_pred             eEEEecccCCCc-hhHHHHHHHHHhcC-CceEEeeCCCccC--CCCchHHHHHHHHhcceEEEEeecCC
Q 047667           15 DVFLSFRGEDTR-KSFTGHLYAALKNK-GIYVFRDDKELEK--GGSISPELLKAIEESRISIIVLSKNY   79 (160)
Q Consensus        15 dVFISy~~~D~~-~~fv~~L~~~L~~~-g~~v~~d~~dl~~--G~~~~~~i~~~i~~S~~~v~vlS~~~   79 (160)
                      -|||||++.... ...|..|+..|++. |+.|.+|..+...  +..+..=+.+.+++++.+|+|+||.+
T Consensus         2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~   70 (150)
T PF08357_consen    2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY   70 (150)
T ss_pred             eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence            499999985543 35699999999999 9999999988844  66777788889999999999999654

g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].

>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins

Probab=97.73  E-value=0.00022  Score=50.42  Aligned_cols=88  Identities=14%  Similarity=0.191  Sum_probs=68.6

Q ss_pred             eEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC-------------CcC
Q 047667           15 DVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN-------------YAS   81 (160)
Q Consensus        15 dVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~-------------~~~   81 (160)
                      .|||.|+ .|.  ..+..+...|+..|+.+.+-......|..+.+.+.+.+.+++..|+++||+             ...
T Consensus         1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD~~~~~~~~~~~~~~a   77 (125)
T PF10137_consen    1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDDIGYSRGEEEDLQPRA   77 (125)
T ss_pred             CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccccccccCCcccccccc
Confidence            3899998 554  678889999998888777766667999999999999999999999999985             223


Q ss_pred             CHHHHHHHHHHHHHhhcCCccccEE
Q 047667           82 STWCLDELAKIVECKNRKDQILPIF  106 (160)
Q Consensus        82 S~wc~~El~~~~~~~~~~~~iiPI~  106 (160)
                      ...+..|+..++.+ ....+++.+.
T Consensus        78 R~NVifE~G~f~g~-LGr~rv~~l~  101 (125)
T PF10137_consen   78 RQNVIFELGLFIGK-LGRERVFILV  101 (125)
T ss_pred             ccceeehhhHHHhh-cCcceEEEEE
Confidence            44678899888874 2334555554

Their exact function has not, as yet, been defined.

>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2

Probab=94.73  E-value=0.3  Score=33.33  Aligned_cols=78  Identities=19%  Similarity=0.162  Sum_probs=54.3

Q ss_pred             hhHHHHHHHHHhcCCceEEeeCC-Ccc---CCCCchH----HHHHHHHhcceEEEEeecCCcCCHHHHHHHHHHHHHhhc
Q 047667           27 KSFTGHLYAALKNKGIYVFRDDK-ELE---KGGSISP----ELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNR   98 (160)
Q Consensus        27 ~~fv~~L~~~L~~~g~~v~~d~~-dl~---~G~~~~~----~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~~~~~   98 (160)
                      ..+...+.+.|++.|+.++...+ +..   ....+..    .-.++|++|+++|+++...- .+.-+..|+..|..   .
T Consensus        13 ~~~~~~~~~~L~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~a---l   88 (113)
T PF05014_consen   13 KARVERLREALEKNGFEVYSPQDNDENDEEDSQEWAREIFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYA---L   88 (113)
T ss_dssp             HHHHHHHHHHHHTTTTEEEGGCTCSSS--TTSHHCHHHHHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHH---T
T ss_pred             HHHHHHHHHHHHhCCCEEEeccccccccccccchHHHHHHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHH---C
Confidence            36788999999999998887652 221   1233333    34568999999999998755 56779999999987   4


Q ss_pred             CCccccEEee
Q 047667           99 KDQILPIFYD  108 (160)
Q Consensus        99 ~~~iiPI~~~  108 (160)
                      +++|+-+.-+
T Consensus        89 gkpv~~~~~d   98 (113)
T PF05014_consen   89 GKPVILLTED   98 (113)
T ss_dssp             TSEEEEEECC
T ss_pred             CCEEEEEEcC
Confidence            5655554433

4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=93.94  E-value=0.073  Score=42.03  Aligned_cols=94  Identities=18%  Similarity=0.121  Sum_probs=64.7

Q ss_pred             CCCceeEEEecccCCCchhHHHHHHHHHhcC--CceEEeeCC---CccCCCCchHHHHHHH-HhcceEEEEeecCCcCCH
Q 047667           10 SHGKYDVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDK---ELEKGGSISPELLKAI-EESRISIIVLSKNYASST   83 (160)
Q Consensus        10 ~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~---dl~~G~~~~~~i~~~i-~~S~~~v~vlS~~~~~S~   83 (160)
                      ..+.||+=+||.++-.  ..|++...+++..  .+..|+|-.   -+.+|+ +..-+...- ..|++.+|++..+|....
T Consensus       174 ~~~~~DiG~SFaGEAR--~LVEqV~~E~~~~~~p~~~FYD~~~~~~L~~~s-L~~~L~~~Y~~rC~~~~VF~~~~Y~~K~  250 (329)
T COG4916         174 SEKPVDSGISFAGEAR--NLVEQVQTEHSGLDIPTRRFYDLLVAHPLYPGS-LVSTLDPGYDIRCVVTTVFNTGSYICKS  250 (329)
T ss_pred             cccccceeeEeehhhh--hHHHHHHHhhhcccCCceeeeechhhccccCcc-HHHhcccccCceEEEEEEEeCCceEEee
Confidence            4678999999998864  7899999999955  567777642   223332 222222222 278889999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCccccEEe
Q 047667           84 WCLDELAKIVECKNRKDQILPIFY  107 (160)
Q Consensus        84 wc~~El~~~~~~~~~~~~iiPI~~  107 (160)
                      ||..|...+-. ...-+.++||.+
T Consensus       251 ~c~~E~~~~r~-~~~~d~~~rI~~  273 (329)
T COG4916         251 TCHIEGLEGRL-NPILDTGFRIKY  273 (329)
T ss_pred             eeccchhhccc-cccccccceEEE
Confidence            99999876533 112246677766

>PF13271 DUF4062: Domain of unknown function (DUF4062)

Probab=93.50  E-value=0.43  Score=30.89  Aligned_cols=65  Identities=26%  Similarity=0.268  Sum_probs=45.4

Q ss_pred             EEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCc-cCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 047667           16 VFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKEL-EKGGSISPELLKAIEESRISIIVLSKNYASS   82 (160)
Q Consensus        16 VFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl-~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S   82 (160)
                      ||||=.-.|- ..-=+.|.+.|.+.|+.+..-+. + ..+....+.+.+.|++|++.|.++...|-..
T Consensus         2 VFiSSt~~Dl-~~eR~~l~~~i~~~~~~~~~~e~-~~a~~~~~~~~cl~~v~~cDifI~ilG~rYG~~   67 (83)
T PF13271_consen    2 VFISSTFRDL-KEERDALIEAIRRLGCEPVGMEF-FPASDQSPLEICLKEVDECDIFILILGNRYGSV   67 (83)
T ss_pred             EEEecChhhH-HHHHHHHHHHHHHCCCeeeeeee-ecCCCCCHHHHHHHHHhhCCEEEEeeccccCCC
Confidence            8999766664 23355677777777765544332 3 2345556778899999999999999988653

>COG4271 Predicted nucleotide-binding protein containing TIR -like domain [Transcription]

Probab=93.23  E-value=0.94  Score=34.57  Aligned_cols=87  Identities=17%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             eEEEecccCCCchhHHHHHHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCc------------
Q 047667           15 DVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYA------------   80 (160)
Q Consensus        15 dVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~------------   80 (160)
                      -|||-|++.    ..+.....+|++.  -..+|+|. -+..|..+.+.+.+-|.+++..|++++|+=.            
T Consensus        84 kvFvv~ghd----~iArael~allrd~~l~~vi~d~-~~~~g~~ile~lek~i~~v~FAi~latPDDkgy~~~~~~~k~~  158 (233)
T COG4271          84 KVFVVSGHD----AIARAELEALLRDWKLEPVILDG-LFSEGQTILESLEKYIAEVKFAIVLATPDDKGYRAVHSREKAF  158 (233)
T ss_pred             eEEEEeccH----HHHHHHHHHHhhccccceEEecC-cccccHHHHHHHHHHhhhceEEEEEecCcccccccccchhhcc
Confidence            899999654    3677777888765  34677776 5788999999999999999999999999843            


Q ss_pred             --CCHHHHHHHHHHHHHhhcCCccccEEe
Q 047667           81 --SSTWCLDELAKIVECKNRKDQILPIFY  107 (160)
Q Consensus        81 --~S~wc~~El~~~~~~~~~~~~iiPI~~  107 (160)
                        ....+..||...+.+ ..+++|+.+..
T Consensus       159 praRqNVifELGm~mgr-LgRkrv~Il~k  186 (233)
T COG4271         159 PRARQNVIFELGMFMGR-LGRKRVMILMK  186 (233)
T ss_pred             ccccccchhhHhhHHhh-cccceEEEEec
Confidence              223467788888773 34456655544

>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain

Probab=87.64  E-value=3.9  Score=25.98  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=39.8

Q ss_pred             eeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC
Q 047667           14 YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN   78 (160)
Q Consensus        14 ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~   78 (160)
                      ++|+|...+.+. ...+..+...|++.|+++-+|.+.    ..+...+..+-..--..++++.++
T Consensus         2 ~~v~ii~~~~~~-~~~a~~~~~~Lr~~g~~v~~d~~~----~~~~~~~~~a~~~g~~~~iiig~~   61 (91)
T cd00860           2 VQVVVIPVTDEH-LDYAKEVAKKLSDAGIRVEVDLRN----EKLGKKIREAQLQKIPYILVVGDK   61 (91)
T ss_pred             eEEEEEeeCchH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHHcCCCEEEEECcc
Confidence            687777655433 356888999999999999998753    344455666544443455555554

ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.

>PF14359 DUF4406: Domain of unknown function (DUF4406)

Probab=84.79  E-value=9.2  Score=25.36  Aligned_cols=63  Identities=13%  Similarity=0.043  Sum_probs=43.8

Q ss_pred             HHHHHHHHhcCCceEEeeCCC-ccCCCCchHHHH---HHHHhcceEEEEeecCCcCCHHHHHHHHHHHH
Q 047667           30 TGHLYAALKNKGIYVFRDDKE-LEKGGSISPELL---KAIEESRISIIVLSKNYASSTWCLDELAKIVE   94 (160)
Q Consensus        30 v~~L~~~L~~~g~~v~~d~~d-l~~G~~~~~~i~---~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~   94 (160)
                      .......|+..|+.|.--... ...|.++.+-+.   ..|..|+.+++  =|+.-+|.-|+.|+..|..
T Consensus        18 f~~~a~~L~~~G~~vvnPa~~~~~~~~~~~~ym~~~l~~L~~cD~i~~--l~gWe~S~GA~~E~~~A~~   84 (92)
T PF14359_consen   18 FNAAAKRLRAKGYEVVNPAELGIPEGLSWEEYMRICLAMLSDCDAIYM--LPGWENSRGARLEHELAKK   84 (92)
T ss_pred             HHHHHHHHHHCCCEEeCchhhCCCCCCCHHHHHHHHHHHHHhCCEEEE--cCCcccCcchHHHHHHHHH
Confidence            555888899999776543322 356666554443   44557775444  3999999999999999976

>COG4916 Uncharacterized protein containing a TIR (Toll-Interleukin 1-resistance) domain [Function unknown]

Probab=83.17  E-value=1.4  Score=35.01  Aligned_cols=97  Identities=24%  Similarity=0.460  Sum_probs=69.6

Q ss_pred             CCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHH---H--hcceEEEEeecCCcCCHHH
Q 047667           11 HGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAI---E--ESRISIIVLSKNYASSTWC   85 (160)
Q Consensus        11 ~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i---~--~S~~~v~vlS~~~~~S~wc   85 (160)
                      +..+.+=+||.+.|.  .+|+...+-|.++|+.+++|-.+  -..-|.-+|.+-+   -  ..-.++.++|.+|-...|.
T Consensus         4 ~~~~~~a~~f~~~d~--~~~~~~~n~~~~~~v~~~y~~~~--~a~~~~~~~~~~~~e~~q~~~~~~~~f~~~~~~r~~~~   79 (329)
T COG4916           4 NVQFEIALSFAGEDR--EYVDRVANLLREAGVTVFYDIFE--EANLWGKNLYDYLSEIYQDKALFTIMFISEHYSRKMWT   79 (329)
T ss_pred             chheeeeeeecCchH--HHHHHHHHHHHhhccEEEEeehh--hhhhhhhHHHHHHHHHHhhhhHHHhhhhhccccCcCCC
Confidence            345777899999986  78999999999999999998632  2222333333322   2  3445778889999999999


Q ss_pred             HHHHHHHHHH--hhcCCccccEEeecCc
Q 047667           86 LDELAKIVEC--KNRKDQILPIFYDVEP  111 (160)
Q Consensus        86 ~~El~~~~~~--~~~~~~iiPI~~~~~p  111 (160)
                      ..|++..+..  .+..-.++|-.++..|
T Consensus        80 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~  107 (329)
T COG4916          80 NHERQAMQARAFQEHQEYILPARFDETP  107 (329)
T ss_pred             cHHHHHHHHHHhhhccEEehhhhhccCC
Confidence            9999887765  4555678888776544

>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS)

Probab=81.05  E-value=8.7  Score=24.43  Aligned_cols=61  Identities=21%  Similarity=0.259  Sum_probs=39.6

Q ss_pred             eeEEEecccCC--CchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC
Q 047667           14 YDVFLSFRGED--TRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN   78 (160)
Q Consensus        14 ydVFISy~~~D--~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~   78 (160)
                      ++|+|...+.+  .....+..+...|+..|+.+-+|..    +..+...+..+-...-..++++.++
T Consensus         2 ~~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~----~~~~~k~~~~a~~~g~~~~iiig~~   64 (94)
T cd00738           2 IDVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR----ERKIGKKFREADLRGVPFAVVVGED   64 (94)
T ss_pred             eEEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC----CcCHhHHHHHHHhCCCCEEEEECCC
Confidence            57777654430  1235688899999999999998774    3455555555544444567777764

In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3ozi_A	204	Crystal Structure Of The Tir Domain From The Flax D		4e-35
3jrn_A	176	Crystal Structure Of Tir Domain From Arabidopsis Th		5e-35
1fyv_A	161	Crystal Structure Of The Tir Domain Of Human Tlr1 L		1e-04

>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease Resistance Protein L6 Length = 204

Iteration: 1
 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/147 (48%), Positives = 97/147 (65%), Gaps = 4/147 (2%)
Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
           +Y+VFLSFRG DTR+ FT  LY +L+   I+ FRDD EL KG  I P LL+AI++S+I +
Sbjct: 35  EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 73  IVLSKNYASSTWCLDELAKIVECKNRKDQ--ILPIFYDVEPTVVRKQTASFGEAFAKHEE 130
            ++S  YA S WCL ELA+IV  +    +  ILPIFY V+P+ VR QT  + +AF KH  
Sbjct: 95  PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 AFRNNVEKVQTWRDALKTVANKSGWEL 157
            F  + + +Q W+DALK V +  GW +
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWHI 179

>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana Length = 176

Iteration: 1
 Score =  143 bits (360), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 91/143 (63%), Gaps = 3/143 (2%)
Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
           KYDVFLSFRG DTR +F   LY  L  + I  F+DDKELE G   SPEL   IE SR ++
Sbjct: 8   KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 73  IVLSKNYASSTWCLDELAKIVECKNRKD-QILPIFYDVEPTVVRKQTASFGEAFAKHEEA 131
           +V+S+NYA+S+WCLDEL  I++ + +    ++PIFY VEP  VR QT    E F KH  A
Sbjct: 68  VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH--A 125
Query: 132 FRNNVEKVQTWRDALKTVANKSG 154
            R + EKV  WR AL   A  SG
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSG 148

>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1 Length = 161

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 13 KYDVFLSFRGEDTRKSF--TGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRI 70
          ++  F+S+ G D   SF     L   L+ +G  +   ++    G SI   ++  IE+S  
Sbjct: 12 QFHAFISYSGHD---SFWVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYK 68
Query: 71 SIIVLSKNYASSTWCLDEL 89
          SI VLS N+  S WC  EL
Sbjct: 69 SIFVLSPNFVQSEWCHYEL 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	4e-96
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	5e-93
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	3e-78
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	7e-20
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	8e-11
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	1e-10
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	7e-08
2js7_A	160	Myeloid differentiation primary response protein M	4e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-04

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana} Length = 176

 Score =  274 bits (702), Expect = 4e-96
 Identities = 76/160 (47%), Positives = 94/160 (58%), Gaps = 8/160 (5%)

Query: 1   MASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPE 60
           M+S +  K     YDVFLSFRG DTR +F   LY  L  + I  F+DDKELE G   SPE
Sbjct: 1   MSSHTATK-----YDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPE 55

Query: 61  LLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQI-LPIFYDVEPTVVRKQTA 119
           L   IE SR +++V+S+NYA+S+WCLDEL  I++ + +     +PIFY VEP  VR QT 
Sbjct: 56  LKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTG 115

Query: 120 SFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKD 159
              E F KH    R + EKV  WR AL   A  SG    D
Sbjct: 116 VLAEQFKKHAS--REDPEKVLKWRQALTNFAQLSGDCSGD 153

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum} Length = 204

 Score =  267 bits (684), Expect = 5e-93
 Identities = 72/163 (44%), Positives = 102/163 (62%), Gaps = 6/163 (3%)

Query: 1   MASTSIQKVS--HGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSIS 58
           ++ ++    S    +Y+VFLSFRG DTR+ FT  LY +L+   I+ FRDD EL KG  I 
Sbjct: 21  ISDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIG 80

Query: 59  PELLKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQ--ILPIFYDVEPTVVRK 116
           P LL+AI++S+I + ++S  YA S WCL ELA+IV  +    +  ILPIFY V+P+ VR 
Sbjct: 81  PNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRH 140

Query: 117 QTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKD 159
           QT  + +AF KH   F  + + +Q W+DALK V +  GW +  
Sbjct: 141 QTGCYKKAFRKHANKF--DGQTIQNWKDALKKVGDLKGWHIGK 181

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222} Length = 154

 Score =  228 bits (583), Expect = 3e-78
 Identities = 36/146 (24%), Positives = 65/146 (44%), Gaps = 4/146 (2%)

Query: 2   ASTSIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPEL 61
            +T+    S   +D+F+S   ED +  F   L   L+  G  V+ DD  L  G S+   +
Sbjct: 9   PTTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSI 67

Query: 62  LKAIEESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVEPTVVRKQTAS 120
            K +  SR  I+VLS ++    W   EL  + + ++     ILPI++ V    V   + +
Sbjct: 68  DKGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEVASFSPT 127

Query: 121 FGEAFAKHEEAFRNNVEKVQTWRDAL 146
             +  A +      +V+++     A+
Sbjct: 128 MADKLAFNTS--TKSVDEIVADLMAI 151

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A Length = 146

 Score = 79.7 bits (197), Expect = 7e-20
 Identities = 18/101 (17%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRI 70
            YDV +    ED        L + L+     +  F   ++   GG+I  EL +A+  S  
Sbjct: 10  DYDVCVCHSEEDLV--AAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHC 67

Query: 71  SIIVLSKNYASSTWCLDELAKIVECKNRKDQ-ILPIFYDVE 110
            +++++  +    WC  ++ + +      +   +P+   + 
Sbjct: 68  RVLLITPGFLQDPWCKYQMLQALTEAPGAEGCTIPLLSGLS 108

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens} Length = 159

 Score = 56.3 bits (135), Expect = 8e-11
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 13  KYDVFLSFRGEDTRKS---------FTGHLYAAL--KNKGIYVFRDDKELEKGGSISPEL 61
            YD +LS+   D  +          F   +   +  K+ G  +F  D++L   G+   ++
Sbjct: 2   DYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDV 61

Query: 62  LKAIEESRISIIVLSKNYA-SSTWCL--DELAKIVECKNRKDQILPIFYD 108
            + +++S+  IIV++ NY     W +   E          + +++ I   
Sbjct: 62  ARCVDQSKRLIIVMTPNYVVRRGWSIFELETRLRNMLVTGEIKVILIECS 111

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A Length = 178

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRI 70
           ++  F+S+   D        L   L+ +   I +   +   + G SIS  ++  IE+S  
Sbjct: 35  RFHAFISYSEHD-SLWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYK 93

Query: 71  SIIVLSKNYASSTWCLDEL--AKIVECKNRKDQILPIFYDVEP 111
           SI VLS N+  + WC  E   A         D I+ I  +  P
Sbjct: 94  SIFVLSPNFVQNEWCHYEFYFAHHNLFHENSDHIILILLEPIP 136

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A Length = 149

 Score = 47.9 bits (114), Expect = 7e-08
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 5/99 (5%)

Query: 14  YDVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRIS 71
           YD F+S+   D        +   L+N      +    ++   G  I   ++ +IE+S  +
Sbjct: 6   YDAFVSYSERD-AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKT 64

Query: 72  IIVLSKNYASSTWCLDEL--AKIVECKNRKDQILPIFYD 108
           + VLS+N+  S W   EL  +         D  + I  +
Sbjct: 65  VFVLSENFVKSEWXKYELDFSHFRLFDENNDAAILILLE 103

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A Length = 160

 Score = 43.6 bits (103), Expect = 4e-06
 Identities = 19/102 (18%), Positives = 43/102 (42%), Gaps = 9/102 (8%)

Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFR---DDKELEKGGSISPELLKAIEE-S 68
           ++D F+ +   D +  F   +   L+    Y  +    D+++  G  +     + IE+  
Sbjct: 16  RFDAFICYCPSDIQ--FVQEMIRQLEQTN-YRLKLCVSDRDVLPGTCVWSIASELIEKRC 72

Query: 69  RISIIVLSKNYASSTWCLDELAKIVEC--KNRKDQILPIFYD 108
           R  ++V+S +Y  S  C  +    +       + +++PI Y 
Sbjct: 73  RRMVVVVSDDYLQSKECDFQTKFALSLSPGAHQKRLIPIKYK 114

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 10/84 (11%)

Query: 13  KYDVFLSFRGEDT---RKSFTGHLYAALKNKGIYVF----RDDKELEKGGSISPELLKAI 65
           KYD +L F  +D    + +   HL     ++  +      RD      G +    +  AI
Sbjct: 670 KYDAYLCFSSKDFTWVQNALLKHLDTQYSDQNRFNLCFEERD---FVPGENRIANIQDAI 726

Query: 66  EESRISIIVLSKNYASSTWCLDEL 89
             SR  + ++S+++    WCL+  
Sbjct: 727 WNSRKIVCLVSRHFLRDGWCLEAF 750

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3ozi_A	204	L6TR; plant TIR domain, plant protein; 2.30A {Linu	100.0
3jrn_A	176	AT1G72930 protein; TIR domain arabidopsis thaliana	100.0
3h16_A	154	TIR protein; bacteria TIR domain, signaling protei	100.0
3ub2_A	146	TOLL/interleukin-1 receptor domain-containing ADA	99.96
1fyx_A	149	TOLL-like receptor 2; beta-alpha-beta fold, signal	99.94
2js7_A	160	Myeloid differentiation primary response protein M	99.93
2j67_A	178	TOLL like receptor 10; TIR, IL-1, TLR10, membrane,	99.93
1t3g_A	159	X-linked interleukin-1 receptor accessory protein-	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.84
1eiw_A	111	Hypothetical protein MTH538; CHEY-like fold, flavo	98.59
3hyn_A	189	Putative signal transduction protein; DUF1863 fami	97.97
2f62_A	161	Nucleoside 2-deoxyribosyltransferase; SGPP, struct	96.13
2khz_A	165	C-MYC-responsive protein RCL; flexible loop, nucle	94.87
4fyk_A	152	Deoxyribonucleoside 5'-monophosphate N-glycosidas;	93.26
3ehd_A	162	Uncharacterized conserved protein; PSI,MCSG,PF0501	91.04
1s2d_A	167	Purine trans deoxyribosylase; ribosylate intermedi	86.94

>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}

Probab=100.00  E-value=9e-49  Score=295.34  Aligned_cols=153  Identities=46%  Similarity=0.823  Sum_probs=139.7

Q ss_pred             CCCCCCCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHH
Q 047667            5 SIQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTW   84 (160)
Q Consensus         5 ss~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~w   84 (160)
                      +|++.+.++|||||||+++|.|..|+.+|+.+|+++||++|+|++++.+|+.|.++|.++|++|+++|+|+|++|+.|.|
T Consensus        27 ~s~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~W  106 (204)
T 3ozi_A           27 PSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKW  106 (204)
T ss_dssp             -------CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHH
T ss_pred             CcCCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcH
Confidence            33445689999999999999888899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH-hh-cCCccccEEeecCchhhhcccchhHHHHHHHHHhccCChHHHHHHHHHHHHhhcccceeecC
Q 047667           85 CLDELAKIVEC-KN-RKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELKD  159 (160)
Q Consensus        85 c~~El~~~~~~-~~-~~~~iiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i~~~~g~~~~~  159 (160)
                      |++||..+++| +. .+.+||||||+++|++||+|+|.||++|.++.+.+.  ++++++||.||++|++++||++.+
T Consensus       107 Cl~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~lsG~~~~~  181 (204)
T 3ozi_A          107 CLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLKGWHIGK  181 (204)
T ss_dssp             HHHHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSCBEEECT
T ss_pred             HHHHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccCceecCC
Confidence            99999999999 54 578999999999999999999999999999998774  689999999999999999999865

>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}

Probab=100.00  E-value=2.7e-48  Score=287.90  Aligned_cols=149  Identities=49%  Similarity=0.790  Sum_probs=126.1

Q ss_pred             CCCCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHH
Q 047667            8 KVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLD   87 (160)
Q Consensus         8 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~   87 (160)
                      ++..++|||||||+++|.|..|+.+|+.+|+++||++|+|++++.+|+.+.++|.++|++|++.|+|+|++|++|.||++
T Consensus         3 ss~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~   82 (176)
T 3jrn_A            3 SHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLD   82 (176)
T ss_dssp             ----CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHH
T ss_pred             CCCCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHH
Confidence            34467899999999999888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhcCCccccEEeecCchhhhcccchhHHHHHHHHHhccCChHHHHHHHHHHHHhhcccceeec
Q 047667           88 ELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTVANKSGWELK  158 (160)
Q Consensus        88 El~~~~~~-~~~~~~iiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i~~~~g~~~~  158 (160)
                      ||..+++| +..+.+||||||+++|++|++|+|.||++|.++.+.  .+++++++||.||++|++++|+++.
T Consensus        83 EL~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G~~~~  152 (176)
T 3jrn_A           83 ELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSGDCSG  152 (176)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCCEECC
T ss_pred             HHHHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccceecC
Confidence            99999999 778899999999999999999999999999999987  4589999999999999999999974

>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}

Probab=100.00  E-value=1.3e-35  Score=216.11  Aligned_cols=136  Identities=26%  Similarity=0.397  Sum_probs=118.9

Q ss_pred             CCCCCceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHH
Q 047667            8 KVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLD   87 (160)
Q Consensus         8 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~   87 (160)
                      .++.++|||||||+++| +..|+.+|..+|+++|+++|+|.+++.+|+.|.++|.++|++|+++|+|+|++|++|.||+.
T Consensus        15 ~~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~   93 (154)
T 3h16_A           15 LTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQK   93 (154)
T ss_dssp             ---CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHH
T ss_pred             cCCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHH
Confidence            34578999999999999 45799999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH-hhcCCccccEEeecCchhhhcccchhHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 047667           88 ELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTASFGEAFAKHEEAFRNNVEKVQTWRDALKTV  149 (160)
Q Consensus        88 El~~~~~~-~~~~~~iiPI~~~~~p~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~al~~i  149 (160)
                      |+..++++ ...+.+||||||+++|++|+.+.|.|++.|.....     ...+.++.+.|.++
T Consensus        94 El~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~-----~~~~~~ia~~l~~l  151 (154)
T 3h16_A           94 ELDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS-----TKSVDEIVADLMAI  151 (154)
T ss_dssp             HHHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT-----TSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC-----cccHHHHHHHHHHH
Confidence            99999988 66778999999999999999999999988764433     24456666666554

>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A

Probab=99.96  E-value=1.5e-31  Score=193.14  Aligned_cols=132  Identities=17%  Similarity=0.300  Sum_probs=93.0

Q ss_pred             CCCCCCCceeEEEecccCCCchhHHHHHHHHHhc--CCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCH
Q 047667            6 IQKVSHGKYDVFLSFRGEDTRKSFTGHLYAALKN--KGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASST   83 (160)
Q Consensus         6 s~~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~--~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~   83 (160)
                      .|+..++.|||||||+++|.  .||.+|..+|++  .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|++|.
T Consensus         3 ~~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~   80 (146)
T 3ub2_A            3 GSSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDP   80 (146)
T ss_dssp             -CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCH
T ss_pred             CCCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCH
Confidence            34667889999999999997  789999999999  59999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH-hhcCCccccEEeecCchhhhcccch--------hHHHHHHHHHhccCChHHHHHHHHHH
Q 047667           84 WCLDELAKIVEC-KNRKDQILPIFYDVEPTVVRKQTAS--------FGEAFAKHEEAFRNNVEKVQTWRDAL  146 (160)
Q Consensus        84 wc~~El~~~~~~-~~~~~~iiPI~~~~~p~~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~~W~~al  146 (160)
                      ||..|+..|+++ .....+||||++++++++++.....        ....|.++.       +.+.+|++||
T Consensus        81 wc~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~-------~~v~~~~~~~  145 (146)
T 3ub2_A           81 WCKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVK-------EAVMRYLQTL  145 (146)
T ss_dssp             HHHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHH-------HHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHH-------HHHHHHHHhc
Confidence            999999999997 3344478899998887666543321        123333332       5677888775

>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A

Probab=99.94  E-value=3.5e-28  Score=176.08  Aligned_cols=104  Identities=22%  Similarity=0.379  Sum_probs=93.5

Q ss_pred             CCCceeEEEecccCCCchhHHHH-HHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHH
Q 047667           10 SHGKYDVFLSFRGEDTRKSFTGH-LYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCL   86 (160)
Q Consensus        10 ~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~   86 (160)
                      .++.|||||||+++|.  .||.+ |..+|++.  |+++|+|++|+.||+.+.++|.++|++|+++|+|+|++|++|.||.
T Consensus         2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~   79 (149)
T 1fyx_A            2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK   79 (149)
T ss_dssp             CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred             CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence            4678999999999996  89997 99999986  9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--hhcCCccccEEee-cCchhhh
Q 047667           87 DELAKIVEC--KNRKDQILPIFYD-VEPTVVR  115 (160)
Q Consensus        87 ~El~~~~~~--~~~~~~iiPI~~~-~~p~~v~  115 (160)
                      .|+..|+++  ...+.+||||+++ +.+..++
T Consensus        80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p  111 (149)
T 1fyx_A           80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence            999999864  5567899999995 5554454

>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A

Probab=99.93  E-value=1e-27  Score=175.48  Aligned_cols=102  Identities=18%  Similarity=0.312  Sum_probs=92.3

Q ss_pred             CCCCCceeEEEecccCCCchhHHHHHHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHH-hcceEEEEeecCCcCCHH
Q 047667            8 KVSHGKYDVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIE-ESRISIIVLSKNYASSTW   84 (160)
Q Consensus         8 ~~~~~~ydVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~-~S~~~v~vlS~~~~~S~w   84 (160)
                      .+.++.|||||||+++|.  .||.+|..+|++.  |+++|++++|+.||+.+.++|.++|+ +|+++|+|+|++|++|.|
T Consensus        11 ~~~~~~yDvFISys~~D~--~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~w   88 (160)
T 2js7_A           11 GHMPERFDAFICYCPSDI--QFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKE   88 (160)
T ss_dssp             SCCTTCEEEEEECCGGGH--HHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHH
T ss_pred             CCCCcceEEEEEcccccH--HHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHH
Confidence            345788999999999995  8999999999985  69999999999999999999999999 799999999999999999


Q ss_pred             HHHHHHHHHHH--hhcCCccccEEeecCc
Q 047667           85 CLDELAKIVEC--KNRKDQILPIFYDVEP  111 (160)
Q Consensus        85 c~~El~~~~~~--~~~~~~iiPI~~~~~p  111 (160)
                      |..|+..|+++  ...+.+||||+|+.-+
T Consensus        89 c~~El~~a~~~~~~~~~~~vIpV~~~~~~  117 (160)
T 2js7_A           89 CDFQTKFALSLSPGAHQKRLIPIKYKAMK  117 (160)
T ss_dssp             HHHHHHHHHHHCTTHHHHTEEEEESSCCC
T ss_pred             HHHHHHHHHHHHHccCCCEEEEEEEcccc
Confidence            99999999987  4456799999996543

>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A

Probab=99.93  E-value=1.3e-27  Score=177.76  Aligned_cols=107  Identities=23%  Similarity=0.399  Sum_probs=91.2

Q ss_pred             CCCCCceeEEEecccCCCchhHHHH-HHHHHhc--CCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHH
Q 047667            8 KVSHGKYDVFLSFRGEDTRKSFTGH-LYAALKN--KGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTW   84 (160)
Q Consensus         8 ~~~~~~ydVFISy~~~D~~~~fv~~-L~~~L~~--~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~w   84 (160)
                      ...++.|||||||+++|.  .||.+ |..+|++  .|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|++|.|
T Consensus        30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w  107 (178)
T 2j67_A           30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW  107 (178)
T ss_dssp             CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred             cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence            456789999999999996  89975 9999998  799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHH--hhcCCccccEEee-cCchhhhc
Q 047667           85 CLDELAKIVEC--KNRKDQILPIFYD-VEPTVVRK  116 (160)
Q Consensus        85 c~~El~~~~~~--~~~~~~iiPI~~~-~~p~~v~~  116 (160)
                      |..|+..|+++  ...+.+||||+++ +.+.+++.
T Consensus       108 c~~El~~a~~~~~~~~~~~vIpV~~~~i~~~~lp~  142 (178)
T 2j67_A          108 CHYEFYFAHHNLFHENSDHIILILLEPIPFYCIPT  142 (178)
T ss_dssp             GGTHHHHTTCC-------CEEEEESSCCCGGGSCT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEEEecCCChHHCCh
Confidence            99999999865  5567799999995 44444443

>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}

Probab=99.93  E-value=1e-26  Score=170.01  Aligned_cols=101  Identities=22%  Similarity=0.390  Sum_probs=89.5

Q ss_pred             CceeEEEecccCCC---------chhHHHHHHH-HHh-cCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCc
Q 047667           12 GKYDVFLSFRGEDT---------RKSFTGHLYA-ALK-NKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYA   80 (160)
Q Consensus        12 ~~ydVFISy~~~D~---------~~~fv~~L~~-~L~-~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~   80 (160)
                      +.|||||||+++|.         ++.||.+|.. .|| +.|+++|++++|+.||+.+.++|.++|++|+++|+|+|++|+
T Consensus         1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~   80 (159)
T 1t3g_A            1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV   80 (159)
T ss_dssp             CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred             CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence            57999999999996         3568888555 699 689999999999999999999999999999999999999997


Q ss_pred             -CCHHHHHHHHHHHHH--hhcCCccccEEeecCch
Q 047667           81 -SSTWCLDELAKIVEC--KNRKDQILPIFYDVEPT  112 (160)
Q Consensus        81 -~S~wc~~El~~~~~~--~~~~~~iiPI~~~~~p~  112 (160)
                       .|.||..|++.|+++  .+.+.+||||+++..+.
T Consensus        81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~  115 (159)
T 1t3g_A           81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG  115 (159)
T ss_dssp             HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred             hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence             999999999999987  66678999999875544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.84  E-value=1.4e-21  Score=173.25  Aligned_cols=101  Identities=17%  Similarity=0.354  Sum_probs=92.2

Q ss_pred             CCCCceeEEEecccCCCchhHH-HHHHHHHhc-----CCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 047667            9 VSHGKYDVFLSFRGEDTRKSFT-GHLYAALKN-----KGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASS   82 (160)
Q Consensus         9 ~~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~-----~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S   82 (160)
                      ..++.|||||||+++|.  +|| ..|...||+     .|+++|+++||+.||+.+.++|.++|++|+++|+|+|++|++|
T Consensus       666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s  743 (844)
T 3j0a_A          666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD  743 (844)
T ss_dssp             SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred             ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence            45789999999999996  777 679999996     4899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH--hhcCCccccEEeecCc
Q 047667           83 TWCLDELAKIVEC--KNRKDQILPIFYDVEP  111 (160)
Q Consensus        83 ~wc~~El~~~~~~--~~~~~~iiPI~~~~~p  111 (160)
                      .||..|++.|+++  ++.+++||||+++..|
T Consensus       744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~  774 (844)
T 3j0a_A          744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLS  774 (844)
T ss_dssp             TSTTHHHHHHHSCCCCSSCTTEEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEEeccCC
Confidence            9999999999987  6677899999996544

>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1

Probab=98.59  E-value=2.8e-08  Score=67.91  Aligned_cols=73  Identities=8%  Similarity=0.053  Sum_probs=57.7

Q ss_pred             CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHH
Q 047667           12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAK   91 (160)
Q Consensus        12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~   91 (160)
                      ++|.+||||++.| .   .+.|...|.+.|+...-                ..|+.|+++|++.++...+|+||.+|+..
T Consensus         3 ~~~~lFISh~~~d-~---~~~L~~~l~~~~f~~~~----------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~   62 (111)
T 1eiw_A            3 AEIRLYITEGEVE-D---YRVFLERLEQSGLEWRP----------------ATPEDADAVIVLAGLWGTRRDEILGAVDL   62 (111)
T ss_dssp             CCEEEEECCCCSH-H---HHHHHHHHHHHCSCEEE----------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred             ceEEEEEecccHh-H---HHHHHHHHhCCCCeeec----------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence            4699999999998 2   55566666544554332                67889999999999999999999999998


Q ss_pred             HHHHhhcCCccccEEe
Q 047667           92 IVECKNRKDQILPIFY  107 (160)
Q Consensus        92 ~~~~~~~~~~iiPI~~  107 (160)
                      |.+   .+++||-|..
T Consensus        63 A~~---~gkpIigV~~   75 (111)
T 1eiw_A           63 ARK---SSKPIITVRP   75 (111)
T ss_dssp             HTT---TTCCEEEECC
T ss_pred             HHH---cCCCEEEEEc
Confidence            865   6788887764

>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}

Probab=97.97  E-value=3.2e-05  Score=56.79  Aligned_cols=105  Identities=15%  Similarity=0.198  Sum_probs=72.4

Q ss_pred             ccCCCchhHHHHHHHHHhcCCceEEeeCCCcc-------C-CCCchHHHHHHHHhcceEEEEeecCCcCCHHHHHHHHHH
Q 047667           21 RGEDTRKSFTGHLYAALKNKGIYVFRDDKELE-------K-GGSISPELLKAIEESRISIIVLSKNYASSTWCLDELAKI   92 (160)
Q Consensus        21 ~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~-------~-G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~   92 (160)
                      +.+|.  ...+.|..--++..+--|.|..+..       . -..|...+.+.|..|+.+|+++|+++..+.|..+|++.|
T Consensus        27 a~~Di--~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A  104 (189)
T 3hyn_A           27 STHDF--VYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG  104 (189)
T ss_dssp             GSTTH--HHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence            44554  5577777777766665666765542       2 345678899999999999999999999999999999999


Q ss_pred             HHHhhcCCccccEEeecC-chhhhcccchhHHHHHHHH
Q 047667           93 VECKNRKDQILPIFYDVE-PTVVRKQTASFGEAFAKHE  129 (160)
Q Consensus        93 ~~~~~~~~~iiPI~~~~~-p~~v~~~~~~~~~~~~~~~  129 (160)
                      +.  ..+.+||-|..+-. .+++..-.|.+......++
T Consensus       105 i~--~~~~PII~Vy~~~~~~~~i~~~~g~~~~~~~~~w  140 (189)
T 3hyn_A          105 IG--TKGLPVIVIYPDYDKKSDIVDSNGNFKKQIKDLW  140 (189)
T ss_dssp             TT--TTCCCEEEEETTCCSGGGTBCTTSCBCHHHHHHH
T ss_pred             HH--hcCCcEEEEECCccccchhhhccccchhhHhhcC
Confidence            82  26788888886532 2344433444444444333

>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*

Probab=96.13  E-value=0.048  Score=39.09  Aligned_cols=73  Identities=12%  Similarity=0.127  Sum_probs=54.5

Q ss_pred             hHHHHHHHHHhcCCceEEeeCCCccCCCCchHHH----HHHHHhcceEEEEeec--CCcCCHHHHHHHHHHHHHhhcCCc
Q 047667           28 SFTGHLYAALKNKGIYVFRDDKELEKGGSISPEL----LKAIEESRISIIVLSK--NYASSTWCLDELAKIVECKNRKDQ  101 (160)
Q Consensus        28 ~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i----~~~i~~S~~~v~vlS~--~~~~S~wc~~El~~~~~~~~~~~~  101 (160)
                      .+...+...|++.|+.+++-..+-   ..+...|    .++|++|+++|++++|  .--.+.-+..|+..|..   .+++
T Consensus        27 ~~~~~l~~~l~~~G~~v~~P~~~~---~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~A---lgKP  100 (161)
T 2f62_A           27 SYYNKVRELLKKENVMPLIPTDNE---ATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA---LNKM  100 (161)
T ss_dssp             HHHHHHHHHHHTTTCEEECTTTTC---CSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH---TTCE
T ss_pred             HHHHHHHHHHHHCCCEEECCCccC---cchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHH---CCCE
Confidence            678999999999999988743211   1234444    7899999999999996  44455679999999987   5677


Q ss_pred             cccEE
Q 047667          102 ILPIF  106 (160)
Q Consensus       102 iiPI~  106 (160)
                      |+-+.
T Consensus       101 Vi~l~  105 (161)
T 2f62_A          101 VLTFT  105 (161)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            66554

>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*

Probab=94.87  E-value=0.43  Score=34.01  Aligned_cols=94  Identities=18%  Similarity=0.257  Sum_probs=61.0

Q ss_pred             CCCCCCCCCCCCceeEEEecccCCCc--hhHHHHHHHHHhcCCceEEeeCCCccC-----CCC-------chHHHHHHHH
Q 047667            1 MASTSIQKVSHGKYDVFLSFRGEDTR--KSFTGHLYAALKNKGIYVFRDDKELEK-----GGS-------ISPELLKAIE   66 (160)
Q Consensus         1 m~s~ss~~~~~~~ydVFISy~~~D~~--~~fv~~L~~~L~~~g~~v~~d~~dl~~-----G~~-------~~~~i~~~i~   66 (160)
                      ||.++-    +++..|||+=.-...+  ......+...|++.| .|+.+.. ..|     |..       +.+.-.+.|+
T Consensus         3 ~~~~~~----~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~-~~p~~~~~g~~~~~~~~~i~~~d~~~i~   76 (165)
T 2khz_A            3 MAASGE----QAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHV-ADAELEPLGEEAAGGDQFIHEQDLNWLQ   76 (165)
T ss_dssp             CCCCSS----CCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGT-TTTSSSCCSTTSTTCHHHHHHHHHHHHH
T ss_pred             cccCCC----CCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-Ccccccc-cCchhhccccccccCHHHHHHHHHHHHH
Confidence            555444    3346799984433211  224688999999999 8865431 222     211       1223357899


Q ss_pred             hcceEEEEeecCCcCCHHHHHHHHHHHHHhhcCCccccEE
Q 047667           67 ESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIF  106 (160)
Q Consensus        67 ~S~~~v~vlS~~~~~S~wc~~El~~~~~~~~~~~~iiPI~  106 (160)
                      +|+++|++++   -.+.-+..|+..|..   .+++|+-+.
T Consensus        77 ~aD~vva~~~---~~d~Gt~~EiGyA~a---lgKPVi~l~  110 (165)
T 2khz_A           77 QADVVVAEVT---QPSLGVGYELGRAVA---LGKPILCLF  110 (165)
T ss_dssp             HCSEEEEECS---SCCHHHHHHHHHHHH---TCSSEEEEE
T ss_pred             hCCEEEEECC---CCCCCHHHHHHHHHH---CCCEEEEEE
Confidence            9999999997   457789999999987   577776553

>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*

Probab=93.26  E-value=0.66  Score=32.83  Aligned_cols=85  Identities=21%  Similarity=0.343  Sum_probs=54.1

Q ss_pred             eEEEe--cccCCCchhHHHHHHHHHhcCCceEEeeC---CCc-cCCCC-------chHHHHHHHHhcceEEEEeecCCcC
Q 047667           15 DVFLS--FRGEDTRKSFTGHLYAALKNKGIYVFRDD---KEL-EKGGS-------ISPELLKAIEESRISIIVLSKNYAS   81 (160)
Q Consensus        15 dVFIS--y~~~D~~~~fv~~L~~~L~~~g~~v~~d~---~dl-~~G~~-------~~~~i~~~i~~S~~~v~vlS~~~~~   81 (160)
                      -||++  +.+......+...+.+.|++.| .|+...   .++ ..|+.       +.+.-.+.|++|+.+|++++   ..
T Consensus         4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~   79 (152)
T 4fyk_A            4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP   79 (152)
T ss_dssp             EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence            46665  2222222357899999999999 664321   111 01211       34455678999999999998   55


Q ss_pred             CHHHHHHHHHHHHHhhcCCccccEE
Q 047667           82 STWCLDELAKIVECKNRKDQILPIF  106 (160)
Q Consensus        82 S~wc~~El~~~~~~~~~~~~iiPI~  106 (160)
                      +.-...|+..|..   .+++|+-++
T Consensus        80 d~Gt~~EiG~A~a---lgkPV~~l~  101 (152)
T 4fyk_A           80 SLGVGYELGRAVA---LGKPILCLF  101 (152)
T ss_dssp             CHHHHHHHHHHHH---TTCCEEEEE
T ss_pred             CCCHHHHHHHHHH---cCCeEEEEE
Confidence            7788999999987   466665554

>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}

Probab=91.04  E-value=1.4  Score=31.39  Aligned_cols=76  Identities=8%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             hHHHHHHHHHhcC--CceEEeeCCCcc----CCCCchHHH----HHHHHhcceEEEEeecCCcCCHHHHHHHHHHHHHhh
Q 047667           28 SFTGHLYAALKNK--GIYVFRDDKELE----KGGSISPEL----LKAIEESRISIIVLSKNYASSTWCLDELAKIVECKN   97 (160)
Q Consensus        28 ~fv~~L~~~L~~~--g~~v~~d~~dl~----~G~~~~~~i----~~~i~~S~~~v~vlS~~~~~S~wc~~El~~~~~~~~   97 (160)
                      .+..++.++|++.  |+.++.-.++-.    ++..+...|    .++|++|+++|+++. ....+..+..|+..|..   
T Consensus        20 ~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a---   95 (162)
T 3ehd_A           20 RYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYA---   95 (162)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHH---
Confidence            5678899999875  898887443321    233344444    467999999999995 33456889999999987   


Q ss_pred             cCCccccEEe
Q 047667           98 RKDQILPIFY  107 (160)
Q Consensus        98 ~~~~iiPI~~  107 (160)
                      .+++|+.+.-
T Consensus        96 ~gkPVi~~~~  105 (162)
T 3ehd_A           96 KGIPVVALYT  105 (162)
T ss_dssp             TTCCEEEECC
T ss_pred             CCCEEEEEEc
Confidence            5666666643

>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*

Probab=86.94  E-value=3.6  Score=29.33  Aligned_cols=88  Identities=9%  Similarity=0.067  Sum_probs=58.1

Q ss_pred             eEEEecccCCC-chhHHHHHHHHHhcC--CceEEeeCCC-c--------cCC--------CCchHHHHHHHHhcceEEEE
Q 047667           15 DVFLSFRGEDT-RKSFTGHLYAALKNK--GIYVFRDDKE-L--------EKG--------GSISPELLKAIEESRISIIV   74 (160)
Q Consensus        15 dVFISy~~~D~-~~~fv~~L~~~L~~~--g~~v~~d~~d-l--------~~G--------~~~~~~i~~~i~~S~~~v~v   74 (160)
                      -||+.=.--.. ...+...+.+.|++.  |+.++.-.++ .        ..+        ..+.+.-.++|++|+++|++
T Consensus         9 kIYLAGP~F~~~~~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vVA~   88 (167)
T 1s2d_A            9 KIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGVFL   88 (167)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEEEE
Confidence            47776322111 135788899999999  8888864431 1        111        11233445689999999999


Q ss_pred             eecCCcCCHHHHHHHHHHHHHhhcCCccccEE
Q 047667           75 LSKNYASSTWCLDELAKIVECKNRKDQILPIF  106 (160)
Q Consensus        75 lS~~~~~S~wc~~El~~~~~~~~~~~~iiPI~  106 (160)
                      +...-. +.-+..|+..|..   .+++|+-+.
T Consensus        89 ldg~~~-D~GTa~EiGyA~a---lgKPVv~l~  116 (167)
T 1s2d_A           89 YDMDQL-DDGSAFXIGFMRA---MHKPVILVP  116 (167)
T ss_dssp             EESSSC-CHHHHHHHHHHHH---TTCCEEEEE
T ss_pred             CCCCCC-CCCceeehhhHhh---CCCeEEEEE
Confidence            987544 4678999999987   577776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1fyva_	161	c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (H	1e-23
d1fyxa_	149	c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (H	1e-20

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.0 bits (220), Expect = 1e-23
 Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 3/118 (2%)

Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISI 72
           ++  F+S+ G D+       L   L+ +G+ +   ++    G SI   ++  IE+S  SI
Sbjct: 12  QFHAFISYSGHDSFW-VKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSI 70

Query: 73  IVLSKNYASSTWCLDELAKIVEC--KNRKDQILPIFYDVEPTVVRKQTASFGEAFAKH 128
            VLS N+  S WC  EL            + ++ I  +  P      +    ++    
Sbjct: 71  FVLSPNFVQSEWCHYELYFAHHNLFHEGSNSLILILLEPIPQYSIPSSYHKLKSLMAR 128

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 1e-20
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 13  KYDVFLSFRGEDTRKSFTGHLYAALKN--KGIYVFRDDKELEKGGSISPELLKAIEESRI 70
            YD F+S+   D        +   L+N      +    ++   G  I   ++ +IE+S  
Sbjct: 5   CYDAFVSYSERD-AYWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHK 63

Query: 71  SIIVLSKNYASSTWCLDEL--AKIVECKNRKDQILPIFYDVEP 111
           ++ VLS+N+  S WC  EL  +         D  + I  +   
Sbjct: 64  TVFVLSENFVKSEWCKYELDFSHFRLFDENNDAAILILLEPIE 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1fyva_	161	Toll-like receptor 1, TLR1 {Human (Homo sapiens) [	99.93
d1fyxa_	149	Toll-like receptor 2, TLR2 {Human (Homo sapiens) [	99.92
d2f62a1	152	Nucleoside 2-deoxyribosyltransferase {Trypanosoma	95.28
d1wu7a1	97	Histidyl-tRNA synthetase (HisRS), C-terminal domai	93.83
d1s2da_	167	Purine transdeoxyribosylase {Lactobacillus helveti	92.1
d1f8ya_	156	Nucleoside 2-deoxyribosyltransferase {Lactobacillu	90.98
d1eiwa_	111	Hypothetical protein MTH538 {Archaeon Methanobacte	86.78
d1kmma1	99	Histidyl-tRNA synthetase (HisRS), C-terminal domai	84.1
d1qe0a1	95	Histidyl-tRNA synthetase (HisRS), C-terminal domai	83.29
d1nyra1	113	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	82.06
d1atia1	111	Glycyl-tRNA synthetase (GlyRS), C-terminal domain	81.76
d1qf6a1	110	Threonyl-tRNA synthetase (ThrRS), C-terminal domai	81.52
d1nj1a1	127	Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Me	80.25

>d1fyva_ c.23.2.1 (A:) Toll-like receptor 1, TLR1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 1, TLR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.5e-27  Score=170.94  Aligned_cols=106  Identities=25%  Similarity=0.449  Sum_probs=94.8

Q ss_pred             CCCCCCCCCceeEEEecccCCCchhHH-HHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCC
Q 047667            4 TSIQKVSHGKYDVFLSFRGEDTRKSFT-GHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASS   82 (160)
Q Consensus         4 ~ss~~~~~~~ydVFISy~~~D~~~~fv-~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S   82 (160)
                      +......+++|||||||+++|.  .|| ..|...|+++|+++|+|++++.+|+.+.++|.++|++|+++|+|+|++|+.|
T Consensus         3 pl~~~~~~~~yDvFisys~~D~--~~v~~~L~~~Le~~g~~v~~d~~d~~~G~~~~~~i~~~i~~s~~~i~vlS~~~~~s   80 (161)
T d1fyva_           3 PLEELQRNLQFHAFISYSGHDS--FWVKNELLPNLEKEGMQICLHERNFVPGKSIVENIITCIEKSYKSIFVLSPNFVQS   80 (161)
T ss_dssp             CSTTSSSCCCEEEEEECCGGGH--HHHHHTHHHHHHTTTCCEECTTTTCCTTSCHHHHHHHHHHHEEEEEEEESHHHHHH
T ss_pred             ChhHcCCCCeeEEEEecChhHH--HHHHHHHHHHHHhCCCcceEeccccccccccHHHHHHHHHhCCEEEEEecCccccC
Confidence            3445567889999999999996  677 5699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH--hhcCCccccEEeecCc
Q 047667           83 TWCLDELAKIVEC--KNRKDQILPIFYDVEP  111 (160)
Q Consensus        83 ~wc~~El~~~~~~--~~~~~~iiPI~~~~~p  111 (160)
                      .||..|+..|+++  .....++|||+++..|
T Consensus        81 ~w~~~E~~~a~~~~~~~~~~~lIpV~l~~~~  111 (161)
T d1fyva_          81 EWCHYELYFAHHNLFHEGSNSLILILLEPIP  111 (161)
T ss_dssp             TSHHHHHHTTSCCCSCSSCSSEEEEESSCCC
T ss_pred             hHHHHHHHHHHHHHHHcCCCceeEEEEecCc
Confidence            9999999999876  5566799999996443

>d1fyxa_ c.23.2.1 (A:) Toll-like receptor 2, TLR2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Toll/Interleukin receptor TIR domain
family: Toll/Interleukin receptor TIR domain
domain: Toll-like receptor 2, TLR2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-26  Score=166.38  Aligned_cols=105  Identities=23%  Similarity=0.374  Sum_probs=92.1

Q ss_pred             CCCCceeEEEecccCCCchhHHH-HHHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcCCHHH
Q 047667            9 VSHGKYDVFLSFRGEDTRKSFTG-HLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYASSTWC   85 (160)
Q Consensus         9 ~~~~~ydVFISy~~~D~~~~fv~-~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~S~wc   85 (160)
                      +.++.|||||||+++|.  .||. .|...||+.  |+++|+|++|+.+|+.+.++|.++|++|+++|+|+||+|++|.||
T Consensus         1 ~~~~~YDvFiSys~~D~--~~V~~~l~~~LE~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~S~~~i~vlS~~~l~s~wc   78 (149)
T d1fyxa_           1 SRNICYDAFVSYSERDA--YWVENLMVQELENFNPPFKLCLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWC   78 (149)
T ss_dssp             CCSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTH
T ss_pred             CCCCEEEEEEECchhhH--HHHHHHHHHHHHhcCCCceEEEecccccccchHHHHHHHHHHhCCEEEEEEcCccccccch
Confidence            35789999999999995  6764 589999874  899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH--hhcCCccccEEeec-Cchhhh
Q 047667           86 LDELAKIVEC--KNRKDQILPIFYDV-EPTVVR  115 (160)
Q Consensus        86 ~~El~~~~~~--~~~~~~iiPI~~~~-~p~~v~  115 (160)
                      ..|+..|+.+  +..+.+||||+++. ...+++
T Consensus        79 ~~E~~~a~~~~~~~~~~~iIpV~l~~~~~~~~~  111 (149)
T d1fyxa_          79 KYELDFSHFRLFDENNDAAILILLEPIEKKAIP  111 (149)
T ss_dssp             HHHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred             HHHHHHHHHHHHHcCCceEEEEEeccCchhhcc
Confidence            9999998876  56778999999964 333443

>d2f62a1 c.23.14.1 (A:9-160) Nucleoside 2-deoxyribosyltransferase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.28  E-value=0.041  Score=37.34  Aligned_cols=75  Identities=13%  Similarity=0.116  Sum_probs=53.5

Q ss_pred             hhHHHHHHHHHhcCCceEEeeCCC-ccCCCCchHHHHHHHHhcceEEEEeec--CCcCCHHHHHHHHHHHHHhhcCCccc
Q 047667           27 KSFTGHLYAALKNKGIYVFRDDKE-LEKGGSISPELLKAIEESRISIIVLSK--NYASSTWCLDELAKIVECKNRKDQIL  103 (160)
Q Consensus        27 ~~fv~~L~~~L~~~g~~v~~d~~d-l~~G~~~~~~i~~~i~~S~~~v~vlS~--~~~~S~wc~~El~~~~~~~~~~~~ii  103 (160)
                      ..+..++...|++.|+.++.-.++ ......+.+.-.+.|++|+.+|+++++  .-..+.-+..|+..|..   .+++|+
T Consensus        18 ~~~~~~i~~~l~~~g~~~~~P~d~~~~~~~~If~~d~~~i~~~D~VIA~Ld~frg~~~D~GTa~EiG~A~a---lgKPVi   94 (152)
T d2f62a1          18 ASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAA---LNKMVL   94 (152)
T ss_dssp             HHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHH---TTCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEeccccccchhHHHHHHHHHHHHHhCCEEEEEccccCCCCCCchHHHHHHHHHH---CCCeEE
Confidence            467899999999999999863321 111222445556789999999999985  23345679999999987   466664


Q ss_pred             c
Q 047667          104 P  104 (160)
Q Consensus       104 P  104 (160)
                      -
T Consensus        95 ~   95 (152)
T d2f62a1          95 T   95 (152)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1wu7a1 c.51.1.1 (A:330-426) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.83  E-value=0.13  Score=31.72  Aligned_cols=61  Identities=16%  Similarity=0.178  Sum_probs=45.4

Q ss_pred             CceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667           12 GKYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK   77 (160)
Q Consensus        12 ~~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~   77 (160)
                      ...+|||+.-+... ...+..|...|++.|+++.+|..    +..+...+..|-..--..++++.+
T Consensus         2 ~~~~V~i~~~g~~~-~~~~~~l~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   62 (97)
T d1wu7a1           2 EKKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIM----ERGLSAQLKYASAIGADFAVIFGE   62 (97)
T ss_dssp             SSCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCS----CCCHHHHHHHHHHTTCSEEEEEEH
T ss_pred             CCceEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEECC----CCcHHHHHHHHHhcCCCeEEecCC
Confidence            35789999887775 46899999999999999999874    445666777766544445555554

>d1s2da_ c.23.14.1 (A:) Purine transdeoxyribosylase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Purine transdeoxyribosylase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=92.10  E-value=0.62  Score=31.46  Aligned_cols=92  Identities=10%  Similarity=0.058  Sum_probs=58.7

Q ss_pred             ceeEEEecccCC-CchhHHHHHHHHHhcCC--ceEEeeCCCcc---------CCC----C----chHHHHHHHHhcceEE
Q 047667           13 KYDVFLSFRGED-TRKSFTGHLYAALKNKG--IYVFRDDKELE---------KGG----S----ISPELLKAIEESRISI   72 (160)
Q Consensus        13 ~ydVFISy~~~D-~~~~fv~~L~~~L~~~g--~~v~~d~~dl~---------~G~----~----~~~~i~~~i~~S~~~v   72 (160)
                      +.-|||+=..-+ ....++..+.+.|++.|  +.++.-.++-.         .+.    .    +.+.-.++|++|+++|
T Consensus         7 ~~kIYLAgP~F~~~~~~~~~~~~~~L~~~~~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~If~~D~~~i~~sD~vI   86 (167)
T d1s2da_           7 TGKIYLGSPFYSDAQRERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV   86 (167)
T ss_dssp             CEEEEEECCCSSHHHHHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred             CceEEEECCCCCHHHHHHHHHHHHHHHhCCCcceEECCcccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            466777632211 12357888999999987  56664221100         010    1    2233457899999999


Q ss_pred             EEeecCCcCCHHHHHHHHHHHHHhhcCCccccEEee
Q 047667           73 IVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYD  108 (160)
Q Consensus        73 ~vlS~~~~~S~wc~~El~~~~~~~~~~~~iiPI~~~  108 (160)
                      +++..... +.-+..|+..|..   .+++||.+-.+
T Consensus        87 A~ldg~~~-D~GTa~EiG~A~a---~gKPvi~~~~d  118 (167)
T d1s2da_          87 FLYDMDQL-DDGSAFEIGFMRA---MHKPVILVPFT  118 (167)
T ss_dssp             EEEESSSC-CHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred             EEeCCCCC-CccHHHHHHHHHH---CCCeEEEEecC
Confidence            99987764 4568889999987   57788766543

>d1f8ya_ c.23.14.1 (A:) Nucleoside 2-deoxyribosyltransferase {Lactobacillus leichmannii [TaxId: 28039]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: N-(deoxy)ribosyltransferase-like
family: N-deoxyribosyltransferase
domain: Nucleoside 2-deoxyribosyltransferase
species: Lactobacillus leichmannii [TaxId: 28039]

Probab=90.98  E-value=0.16  Score=34.35  Aligned_cols=91  Identities=13%  Similarity=0.038  Sum_probs=57.0

Q ss_pred             eeEEEecccC-CCchhHHHHHHHHHhcC----CceEEeeCCC----ccCCC--------C----chHHHHHHHHhcceEE
Q 047667           14 YDVFLSFRGE-DTRKSFTGHLYAALKNK----GIYVFRDDKE----LEKGG--------S----ISPELLKAIEESRISI   72 (160)
Q Consensus        14 ydVFISy~~~-D~~~~fv~~L~~~L~~~----g~~v~~d~~d----l~~G~--------~----~~~~i~~~i~~S~~~v   72 (160)
                      ..||+.=..- +....+..++.+.|++.    |+.+|.-.++    ...+.        .    +.+.-.++|++|+++|
T Consensus         3 k~IYlAgP~F~~~q~~~~~~~~~~L~~~~~~~~~~vf~P~~~~~~~~~~~~~~~~~~~~~~a~~If~~D~~~i~~aD~vi   82 (156)
T d1f8ya_           3 KTIYFGAGWFTDRQNKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIML   82 (156)
T ss_dssp             BCEEEECCCSSHHHHHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEEE
T ss_pred             ceEEEECCCCCHHHHHHHHHHHHHHHhccccCCceEeCCccccccccccccccccccchHHHHHHHHHHHHHHHHCCEEE
Confidence            5567752211 11136688899999874    5666552211    11111        1    2333467899999999


Q ss_pred             EEeecCCcCCHHHHHHHHHHHHHhhcCCccccEEee
Q 047667           73 IVLSKNYASSTWCLDELAKIVECKNRKDQILPIFYD  108 (160)
Q Consensus        73 ~vlS~~~~~S~wc~~El~~~~~~~~~~~~iiPI~~~  108 (160)
                      +++..... ..-+..|+..|..   .+++||-+..+
T Consensus        83 a~ldg~~~-D~Gta~EiG~A~a---~gKpvi~~~~~  114 (156)
T d1f8ya_          83 GVYIPDEE-DVGLGMELGYALS---QGKYVLLVIPD  114 (156)
T ss_dssp             EECCGGGC-CHHHHHHHHHHHH---TTCEEEEEECG
T ss_pred             EEeCCCCC-CCCHHHHHHHHHH---cCCcEEEEecC
Confidence            99986543 4568999999987   57777776543

>d1eiwa_ c.23.3.1 (A:) Hypothetical protein MTH538 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Hypothetical protein MTH538
family: Hypothetical protein MTH538
domain: Hypothetical protein MTH538
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=86.78  E-value=0.16  Score=32.42  Aligned_cols=39  Identities=10%  Similarity=0.039  Sum_probs=33.7

Q ss_pred             HhcceEEEEeecCCcCCHHHHHHHHHHHHHhhcCCccccEEe
Q 047667           66 EESRISIIVLSKNYASSTWCLDELAKIVECKNRKDQILPIFY  107 (160)
Q Consensus        66 ~~S~~~v~vlS~~~~~S~wc~~El~~~~~~~~~~~~iiPI~~  107 (160)
                      ++++++|++.......|+|..+|+..|..   .+++||-|--
T Consensus        37 ~~~~vvIVL~G~yt~~r~WI~~EI~~A~~---~~KpIIgV~p   75 (111)
T d1eiwa_          37 EDADAVIVLAGLWGTRRDEILGAVDLARK---SSKPIITVRP   75 (111)
T ss_dssp             SSCSEEEEEGGGTTTSHHHHHHHHHHHTT---TTCCEEEECC
T ss_pred             cCCCEEEEEeeccccCCHHHHHHHHHHHH---cCCCeEEEEe
Confidence            67899999999999999999999999976   6788887763

>d1kmma1 c.51.1.1 (A:326-424) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.10  E-value=0.88  Score=27.65  Aligned_cols=60  Identities=23%  Similarity=0.383  Sum_probs=41.5

Q ss_pred             ceeEEEecccCCCchhHHHHHHHHHhcC--CceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667           13 KYDVFLSFRGEDTRKSFTGHLYAALKNK--GIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK   77 (160)
Q Consensus        13 ~ydVFISy~~~D~~~~fv~~L~~~L~~~--g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~   77 (160)
                      ..||||..-+.+. ...+..|...|++.  |+++-+|..    +..+...+..|-..--..++|+.+
T Consensus         3 ~vdv~vi~~~~~~-~~~a~~la~~LR~~~~gi~v~~~~~----~~~l~kq~k~A~~~~~~~~iiiG~   64 (99)
T d1kmma1           3 VVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHG----GGNFKKQFARADKWGARVAVVLGE   64 (99)
T ss_dssp             SCSEEEECCSTTH-HHHHHHHHHHHHHHSTTCCEEECCS----CCCHHHHHHHHHHHTCSEEEECCH
T ss_pred             CCEEEEEECCHHH-HHHHHHHHHHHHhcCCCeEEEEeCC----CCCHHHHHHHHHHhCCChhhhcCc
Confidence            4799998866554 46688899999876  999998874    345666777766544445555543

>d1qe0a1 c.51.1.1 (A:326-420) Histidyl-tRNA synthetase (HisRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Histidyl-tRNA synthetase (HisRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.29  E-value=0.74  Score=27.74  Aligned_cols=60  Identities=20%  Similarity=0.283  Sum_probs=42.2

Q ss_pred             ceeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667           13 KYDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK   77 (160)
Q Consensus        13 ~ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~   77 (160)
                      ..||||.--+.+. ...+..|...|++.|+++-+|.+    +..+...+..|-...-..++|+.+
T Consensus         4 ~~dv~ii~~~~~~-~~~a~~i~~~Lr~~gi~v~~d~~----~~~l~kq~~~A~~~~~~~~iiiG~   63 (95)
T d1qe0a1           4 NLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYL----QRKIKGQMKQADRLGAKFTIVIGD   63 (95)
T ss_dssp             CCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCS----CCCHHHHHHHHHHTTCSEEEEECH
T ss_pred             CCeEEEEEeCHHH-HHHHHHHHHHHHHCCCcEEecCC----CCCHHHHHHHHHhcCCCEEEEEcc
Confidence            4789997654443 46788999999999999988864    345666777766544445555554

>d1nyra1 c.51.1.1 (A:533-645) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.06  E-value=0.16  Score=32.20  Aligned_cols=60  Identities=22%  Similarity=0.210  Sum_probs=37.3

Q ss_pred             eeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeec
Q 047667           14 YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSK   77 (160)
Q Consensus        14 ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~   77 (160)
                      +.|.|.--+.|...+++..|.+.|++.||++.+|.++-..|    ..+..+-..---.++|+.+
T Consensus        14 ~qv~iipi~~~~~~~~a~~l~~~Lr~~gi~v~~D~~~~~~g----~k~~~a~~~g~p~~iiiG~   73 (113)
T d1nyra1          14 KQVQIIPVNVDLHYDYARQLQDELKSQGVRVSIDDRNEKMG----YKIREAQMQKIPYQIVVGD   73 (113)
T ss_dssp             SCEEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCSSCCHH----HHHHHHHHHTCSEEEEECH
T ss_pred             ceEEEEEeCcHHHhhhHHHHHHHhhhhccceeecccccccc----hHHHHHHHhCceEEEEEcc
Confidence            34544332333223679999999999999999998765544    4455544433335555554

>d1atia1 c.51.1.1 (A:395-505) Glycyl-tRNA synthetase (GlyRS), C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Glycyl-tRNA synthetase (GlyRS), C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.76  E-value=0.14  Score=32.49  Aligned_cols=49  Identities=10%  Similarity=-0.006  Sum_probs=34.3

Q ss_pred             hhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCC
Q 047667           27 KSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNY   79 (160)
Q Consensus        27 ~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~   79 (160)
                      .+++..|+..|...|+++.+|+++-.+|..+.+.-..++    =.++++.+..
T Consensus        20 ~~~a~~l~~~L~~~gi~v~~Ddr~~~~G~K~~~~~~~gv----P~~iiIG~ke   68 (111)
T d1atia1          20 TEYAKRLKARLLALGLGRVLYEDTGNIGKAYRRHDEVGT----PFAVTVDYDT   68 (111)
T ss_dssp             HHHHHHHHHHHHTTCSSCEEECCCSCHHHHHHHHHHTTC----SEEEEECHHH
T ss_pred             HHHHHHHHhhhccccceeEeecCCCCHHHHHHHHHHcCC----CEEEEECcHH
Confidence            467899999999999999999988777765544332222    2555555543

>d1qf6a1 c.51.1.1 (A:533-642) Threonyl-tRNA synthetase (ThrRS), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Threonyl-tRNA synthetase (ThrRS), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.52  E-value=2  Score=26.43  Aligned_cols=63  Identities=16%  Similarity=0.148  Sum_probs=42.2

Q ss_pred             eeEEEecccCCCchhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecCCcC
Q 047667           14 YDVFLSFRGEDTRKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKNYAS   81 (160)
Q Consensus        14 ydVFISy~~~D~~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~~~~   81 (160)
                      ++|.|.-=+.+ ...++..|.+.|++.||++.+|.++-    .+...+.++-..---.++|+.+.-+.
T Consensus         8 ~Qv~iipi~~~-~~~~a~~i~~~Lr~~gi~v~~d~~~~----~l~~ki~~a~~~g~p~~iiiG~~E~~   70 (110)
T d1qf6a1           8 VQVVIMNITDS-QSEYVNELTQKLSNAGIRVKADLRNE----KIGFKIREHTLRRVPYMLVCGDKEVE   70 (110)
T ss_dssp             SCEEEEESSHH-HHHHHHHHHHHHHTTTCCEEEECCSS----CHHHHHHHHHHTTCSEEEEECTTTGG
T ss_pred             ceEEEEeccHH-HHHHHHHHHHHHHHhhccccccCCcc----chhHHHHHHHHcCCCEEEEECchHHh
Confidence            45666432222 24689999999999999999998654    44456666655445566777765443

>d1nj1a1 c.51.1.1 (A:284-410) Prolyl-tRNA synthetase (ProRS) domain {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Anticodon-binding domain-like
superfamily: Class II aaRS ABD-related
family: Anticodon-binding domain of Class II aaRS
domain: Prolyl-tRNA synthetase (ProRS) domain
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

Probab=80.25  E-value=0.14  Score=33.24  Aligned_cols=62  Identities=13%  Similarity=0.109  Sum_probs=39.6

Q ss_pred             ceeEEEe-cccCCC---chhHHHHHHHHHhcCCceEEeeCCCccCCCCchHHHHHHHHhcceEEEEeecC
Q 047667           13 KYDVFLS-FRGEDT---RKSFTGHLYAALKNKGIYVFRDDKELEKGGSISPELLKAIEESRISIIVLSKN   78 (160)
Q Consensus        13 ~ydVFIS-y~~~D~---~~~fv~~L~~~L~~~g~~v~~d~~dl~~G~~~~~~i~~~i~~S~~~v~vlS~~   78 (160)
                      .|+|.|. -...+.   -..++..|+..|.+.|++|.+|.++..+|.    .+.++-...--.++++.++
T Consensus        11 P~qV~Iipi~~~~~~e~~~~~a~~l~~~L~~~gi~v~~D~r~~~~g~----K~~~a~~~giP~~iiiG~k   76 (127)
T d1nj1a1          11 AHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGR----KYYEWEMRGVPLRVEIGPR   76 (127)
T ss_dssp             SCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHH----HHHHHHHEECSEEEEECHH
T ss_pred             CceEEEEEccCCCchHHHHHHHHHHHHHHHhcCCceEEEeccchHHH----HHHHHHhhcCchheeeccc
Confidence            4677774 222221   135799999999999999999998666554    4444444333356666643