Citrus Sinensis ID: 047672

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MASLTTLLLLSCLLANSASTLVAYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPLSCVVGKAC
cccHHHHHHHHHHHHHccccEEEEccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccEEEEccccccccccccHHHHHHHHccccEEEEEEEcEEEEEccEEEEccccEEEccccEEEEEccccEEEEccccEEEEccEEEEcccccccccccccccccccccccccEEEEcccccEEEEcccccccccccEEEEEccEEEEEEcEEEEcccccEEcccccccccccccEEEEEccccccccccccccccccEEEEEccEEEccccEEEEcccccEEEEEccEEEccccccccEEcccccccccccEEEEEcccEEccccEEcccccccccccccccccEEEcccccHHHHHHccccccccccccc
cccHHHHHHcccccHHHHHHHHHHHccccHHHccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccccccEEEEEEEcccEEEEEcccEEEEEccEEEEEccccEccccEEEEEEcccEEEEEEEEEEEEEcEEEEEcccccccEEEcccccccccccccccEEEEEccccEEEEcccHHccccccEEEccccEEEEEEccEEEEEEEcEEEccccccHHccccEEEEEEccccccccccccccccEEEEEEEcccccEEEEEEcccccccEEccccEEEccccccccEEEEEcccccccccEEEEcccEEEcccEEEcccccccccccccccccccccHHHHHHHHHccccccccccccc
MASLTTLLLLSCLLANSASTLVAYSldsynlpkpavsslKVMNVIDSCWRAKSNWAVNRKALTDCVvgfgkgtlggkyGAIYvvtdpsddpvnpklgtlrygviqtkpLWIIFAKDMVIRLKNELIMNSFKtidgrgakveiangpcitiqGVSHVIIHGisihdckpgksgqvrsspdhvgrrggsdgdaIDIFASSYVWVDHCYLARAADGLIDVIHASTavtisnncfeqHDKVMllghndqftaDKIMKVTIAFnhfgpgliermprvrIGYAHVANNRYedwkmyaiggsanptifsegnyfmasndqntkevtkresyggwkswkwrtskdvflngayfvpsgygscapnysraqsfvvapgamvpaltanagplscvvgkac
MASLTTLLLLSCLLANSASTLVAYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLrygviqtkpLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTkresyggwkswkwrtskDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALtanagplsCVVGKAC
MaslttllllscllansastlVAYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVNRKALTDCVVgfgkgtlggkygAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQgvshviihgisihDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPLSCVVGKAC
***LTTLLLLSCLLANSASTLVAYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDC***********************DAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMAS********TKRESYGGWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPLSCVV****
***LTTLLLLSCLLANSAST********************VMNVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPLSCVVGKAC
MASLTTLLLLSCLLANSASTLVAYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCK******************GSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQN**********GGWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPLSCVVGKAC
*ASLTTLLLLSCLLANSASTLVAYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGAYFVPSG****************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASLTTLLLLSCLLANSASTLVAYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPLSCVVGKAC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query389 2.2.26 [Sep-21-2011]
O65388384 Putative pectate lyase 2 yes no 0.979 0.992 0.711 1e-160
O65456394 Probable pectate lyase 16 no no 0.987 0.974 0.688 1e-156
O65457394 Putative pectate lyase 17 no no 0.987 0.974 0.691 1e-155
Q9C8G4368 Probable pectate lyase 4 no no 0.943 0.997 0.610 1e-131
Q9LRM5452 Probable pectate lyase 9 no no 0.886 0.763 0.605 1e-122
Q944R1470 Probable pectate lyase 15 no no 0.889 0.736 0.58 1e-121
Q9FXD8408 Probable pectate lyase 5 no no 0.910 0.867 0.600 1e-118
Q9M8Z8416 Probable pectate lyase 8 no no 0.889 0.831 0.582 1e-117
Q93Z25432 Probable pectate lyase 22 no no 0.892 0.803 0.589 1e-116
Q9LTZ0412 Putative pectate lyase 11 no no 0.910 0.859 0.572 1e-115
>sp|O65388|PLY2_ARATH Putative pectate lyase 2 OS=Arabidopsis thaliana GN=At1g11920 PE=2 SV=2 Back     alignment and function desciption
 Score =  564 bits (1454), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/392 (71%), Positives = 318/392 (81%), Gaps = 11/392 (2%)

Query: 1   MASLTTLLLLSCLLANSASTLV--AYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVN 58
           MASL  L ++S L A  +S++V  AYS + Y +PK       + N IDSCWR    WA N
Sbjct: 1   MASLF-LTIISLLFAAFSSSVVEAAYS-NGYTIPK------LLPNPIDSCWRRNPYWASN 52

Query: 59  RKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMV 118
           R+AL DC VGFGK  +GGKYG+IYVVT+PSDDP NP+ GTLRY VIQ+KPLWI FA+DMV
Sbjct: 53  RRALADCAVGFGKSAVGGKYGSIYVVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMV 112

Query: 119 IRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSP 178
           I L+NELIMNS+KTIDGRGAKVEIA GPCITIQ VSHVIIHGISIHDCKPGKSG+VRSSP
Sbjct: 113 IVLRNELIMNSYKTIDGRGAKVEIAYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSP 172

Query: 179 DHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVM 238
            HVG R GSDGDAI IF SS++W+DHC+ +R  DGLIDV+HASTAVTISNN F QHDKVM
Sbjct: 173 THVGSRKGSDGDAIAIFDSSHIWIDHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVM 232

Query: 239 LLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANP 298
           LLGHND    DKIM+VTIAFNHFGPGLIERMPRVR GYAHVANNRYE W+MYAIGGSA+P
Sbjct: 233 LLGHNDNNVEDKIMRVTIAFNHFGPGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADP 292

Query: 299 TIFSEGNYFMASNDQNTKEVTKRESYG-GWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNY 357
           TIFSEGNYF+AS+D + K+VTKR   G  WK WKWRTSKDVF NGAYFVPSGYG+  P Y
Sbjct: 293 TIFSEGNYFVASDDPSKKQVTKRIDSGYDWKRWKWRTSKDVFKNGAYFVPSGYGTVTPLY 352

Query: 358 SRAQSFVVAPGAMVPALTANAGPLSCVVGKAC 389
            RA+ F V+ G++VP LT++AGPL C  G+ C
Sbjct: 353 GRAERFPVSHGSLVPLLTSSAGPLHCYSGRIC 384

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: 2
>sp|O65456|PLY16_ARATH Probable pectate lyase 16 OS=Arabidopsis thaliana GN=At4g22080 PE=2 SV=1 Back     alignment and function description
>sp|O65457|PLY17_ARATH Putative pectate lyase 17 OS=Arabidopsis thaliana GN=At4g22090 PE=3 SV=1 Back     alignment and function description
>sp|Q9C8G4|PLY4_ARATH Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRM5|PLY9_ARATH Probable pectate lyase 9 OS=Arabidopsis thaliana GN=At3g24230 PE=2 SV=1 Back     alignment and function description
>sp|Q944R1|PLY15_ARATH Probable pectate lyase 15 OS=Arabidopsis thaliana GN=At4g13710 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXD8|PLY5_ARATH Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2 Back     alignment and function description
>sp|Q9M8Z8|PLY8_ARATH Probable pectate lyase 8 OS=Arabidopsis thaliana GN=At3g07010 PE=2 SV=1 Back     alignment and function description
>sp|Q93Z25|PLY22_ARATH Probable pectate lyase 22 OS=Arabidopsis thaliana GN=At5g63180 PE=2 SV=1 Back     alignment and function description
>sp|Q9LTZ0|PLY11_ARATH Putative pectate lyase 11 OS=Arabidopsis thaliana GN=At3g27400 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
388519379392 unknown [Lotus japonicus] 0.997 0.989 0.743 1e-171
356564480398 PREDICTED: probable pectate lyase 16-lik 1.0 0.977 0.731 1e-170
147789060397 hypothetical protein VITISV_001795 [Viti 1.0 0.979 0.738 1e-170
359483343397 PREDICTED: LOW QUALITY PROTEIN: probable 1.0 0.979 0.738 1e-170
357480361385 hypothetical protein MTR_4g132460 [Medic 0.938 0.948 0.75 1e-168
449515686 588 PREDICTED: putative pectate lyase 2-like 0.969 0.641 0.731 1e-168
449454895 622 PREDICTED: putative pectate lyase 2-like 0.904 0.565 0.775 1e-167
356557929373 PREDICTED: probable pectate lyase 16-lik 0.958 1.0 0.727 1e-167
255554809393 Pectate lyase precursor, putative [Ricin 0.925 0.916 0.777 1e-166
449470674381 PREDICTED: putative pectate lyase 2-like 0.925 0.944 0.758 1e-165
>gi|388519379|gb|AFK47751.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
 Score =  606 bits (1562), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/393 (74%), Positives = 326/393 (82%), Gaps = 5/393 (1%)

Query: 1   MASLTTLLLLSCLLANSASTLVAYSLDS----YNLPKPAVSSLKVMNVIDSCWRAKSNWA 56
           MA+ TTLLLLS  + + A  + AY   +    YN P+P VS    +NVIDSCWRAKSNWA
Sbjct: 1   MATSTTLLLLSFFVLHLALLVNAYEYSTEKYYYNNPEP-VSKKPFLNVIDSCWRAKSNWA 59

Query: 57  VNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKD 116
            NRKAL DC +GFGK  +GGKYGAIYVV D SD+P NPK GTLRYG IQT+PLWIIFA+D
Sbjct: 60  SNRKALADCAIGFGKSAIGGKYGAIYVVIDSSDNPANPKPGTLRYGAIQTQPLWIIFARD 119

Query: 117 MVIRLKNELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQVRS 176
           MVI L NELIMNS+KTIDGRGAKV I NGPCITIQGV HVI+HGISIHDCKPGKSG VRS
Sbjct: 120 MVITLGNELIMNSYKTIDGRGAKVVIGNGPCITIQGVGHVIVHGISIHDCKPGKSGLVRS 179

Query: 177 SPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDK 236
           S DHVG R GSDGD I IFASS VW+DHC+LAR  DGLID++HASTA+TISNN F QHDK
Sbjct: 180 SVDHVGHRRGSDGDGISIFASSNVWIDHCFLARCTDGLIDIVHASTAITISNNYFTQHDK 239

Query: 237 VMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSA 296
           VMLLGHND++TADKIM+VTIAFN F  GLIERMPRVR GYAHV NN+YE+WKMYAIGGSA
Sbjct: 240 VMLLGHNDKYTADKIMRVTIAFNRFASGLIERMPRVRFGYAHVVNNKYEEWKMYAIGGSA 299

Query: 297 NPTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGAYFVPSGYGSCAPN 356
           NPTI SEGNYF+A N+ N K+VTKRE     K+WKWR+SKDVF+NGAYFVPSGYGSCAPN
Sbjct: 300 NPTILSEGNYFIAPNNPNAKQVTKRELNENGKNWKWRSSKDVFVNGAYFVPSGYGSCAPN 359

Query: 357 YSRAQSFVVAPGAMVPALTANAGPLSCVVGKAC 389
           Y+ AQSF VAP + VPA+T NAGP +CVVGKAC
Sbjct: 360 YTPAQSFAVAPASTVPAITLNAGPTTCVVGKAC 392

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356564480|ref|XP_003550482.1| PREDICTED: probable pectate lyase 16-like [Glycine max] Back     alignment and taxonomy information
>gi|147789060|emb|CAN60346.1| hypothetical protein VITISV_001795 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359483343|ref|XP_002263615.2| PREDICTED: LOW QUALITY PROTEIN: probable pectate lyase 16 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357480361|ref|XP_003610466.1| hypothetical protein MTR_4g132460 [Medicago truncatula] gi|357497991|ref|XP_003619284.1| hypothetical protein MTR_6g045700 [Medicago truncatula] gi|355494299|gb|AES75502.1| hypothetical protein MTR_6g045700 [Medicago truncatula] gi|355511521|gb|AES92663.1| hypothetical protein MTR_4g132460 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449515686|ref|XP_004164879.1| PREDICTED: putative pectate lyase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449454895|ref|XP_004145189.1| PREDICTED: putative pectate lyase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356557929|ref|XP_003547262.1| PREDICTED: probable pectate lyase 16-like [Glycine max] Back     alignment and taxonomy information
>gi|255554809|ref|XP_002518442.1| Pectate lyase precursor, putative [Ricinus communis] gi|223542287|gb|EEF43829.1| Pectate lyase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449470674|ref|XP_004153041.1| PREDICTED: putative pectate lyase 2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query389
TAIR|locus:2008925384 AT1G11920 [Arabidopsis thalian 0.925 0.937 0.673 4.4e-132
TAIR|locus:2120633394 RHS14 "root hair specific 14" 0.881 0.870 0.699 1.2e-131
TAIR|locus:2120643394 AT4G22090 [Arabidopsis thalian 0.904 0.893 0.687 6.4e-131
TAIR|locus:2204232368 AT1G30350 [Arabidopsis thalian 0.856 0.904 0.581 3.2e-104
TAIR|locus:2008550408 AT1G67750 [Arabidopsis thalian 0.889 0.848 0.568 1.4e-103
TAIR|locus:2093761452 AT3G24230 [Arabidopsis thalian 0.886 0.763 0.571 7.7e-103
TAIR|locus:2086656412 AT3G27400 [Arabidopsis thalian 0.907 0.856 0.537 1.1e-101
TAIR|locus:2161992432 AT5G63180 [Arabidopsis thalian 0.892 0.803 0.549 6.2e-101
TAIR|locus:2005487470 AT4G13710 [Arabidopsis thalian 0.889 0.736 0.545 7.9e-101
TAIR|locus:2077622416 AT3G07010 [Arabidopsis thalian 0.889 0.831 0.548 1.3e-100
TAIR|locus:2008925 AT1G11920 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
 Identities = 248/368 (67%), Positives = 281/368 (76%)

Query:    23 AYSLDSYNLPKPAVSSLKVMNVIDSCWRAKSNWAVNRKALTDCVVXXXXXXXXXXXXAIY 82
             AYS + Y +PK       + N IDSCWR    WA NR+AL DC V            +IY
Sbjct:    24 AYS-NGYTIPK------LLPNPIDSCWRRNPYWASNRRALADCAVGFGKSAVGGKYGSIY 76

Query:    83 VVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEI 142
             VVT+PSDDP NP+ GTLRY VIQ+KPLWI FA+DMVI L+NELIMNS+KTIDGRGAKVEI
Sbjct:    77 VVTNPSDDPENPRPGTLRYAVIQSKPLWITFARDMVIVLRNELIMNSYKTIDGRGAKVEI 136

Query:   143 ANGPCITIQXXXXXXXXXXXXXDCKPGKSGQVRSSPDHVGRRGGSDGDAIDIFASSYVWV 202
             A GPCITIQ             DCKPGKSG+VRSSP HVG R GSDGDAI IF SS++W+
Sbjct:   137 AYGPCITIQHVSHVIIHGISIHDCKPGKSGRVRSSPTHVGSRKGSDGDAIAIFDSSHIWI 196

Query:   203 DHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFG 262
             DHC+ +R  DGLIDV+HASTAVTISNN F QHDKVMLLGHND    DKIM+VTIAFNHFG
Sbjct:   197 DHCFFSRCQDGLIDVLHASTAVTISNNYFTQHDKVMLLGHNDNNVEDKIMRVTIAFNHFG 256

Query:   263 PGLIERMPRVRIGYAHVANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRE 322
             PGLIERMPRVR GYAHVANNRYE W+MYAIGGSA+PTIFSEGNYF+AS+D + K+VTKR 
Sbjct:   257 PGLIERMPRVRRGYAHVANNRYEKWQMYAIGGSADPTIFSEGNYFVASDDPSKKQVTKRI 316

Query:   323 SYG-GWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPL 381
               G  WK WKWRTSKDVF NGAYFVPSGYG+  P Y RA+ F V+ G++VP LT++AGPL
Sbjct:   317 DSGYDWKRWKWRTSKDVFKNGAYFVPSGYGTVTPLYGRAERFPVSHGSLVPLLTSSAGPL 376

Query:   382 SCVVGKAC 389
              C  G+ C
Sbjct:   377 HCYSGRIC 384
GO:0005576 "extracellular region" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016829 "lyase activity" evidence=ISS
GO:0030570 "pectate lyase activity" evidence=ISS
TAIR|locus:2120633 RHS14 "root hair specific 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120643 AT4G22090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204232 AT1G30350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008550 AT1G67750 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093761 AT3G24230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086656 AT3G27400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161992 AT5G63180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005487 AT4G13710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077622 AT3G07010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P40973PLY_LILLO4, ., 2, ., 2, ., 20.54540.92280.8271N/Ano
P18632SBP_CRYJANo assigned EC number0.50560.89200.9278N/Ano
O24554PLY_ZINEL4, ., 2, ., 2, ., 20.59420.88940.8628N/Ano
P24396PLY18_SOLLC4, ., 2, ., 2, ., 20.57540.89200.8589N/Ano
Q96385MPAC1_CHAOBNo assigned EC number0.53120.89200.9253N/Ano
Q9SCG9MPAC1_CUPARNo assigned EC number0.52470.86370.9710N/Ano
O65388PLY2_ARATH4, ., 2, ., 2, ., 20.71170.97940.9921yesno
P81294MPAJ1_JUNASNo assigned EC number0.51560.88430.9373N/Ano
Q9LLT1MPAJ1_JUNVINo assigned EC number0.51830.87400.9264N/Ano
P27759MPA11_AMBARNo assigned EC number0.50570.88940.8737N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.20.963
4th Layer4.2.2.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
smart00656190 smart00656, Amb_all, Amb_all domain 2e-77
pfam00544200 pfam00544, Pec_lyase_C, Pectate lyase 5e-65
COG3866345 COG3866, PelB, Pectate lyase [Carbohydrate transpo 2e-27
>gnl|CDD|214765 smart00656, Amb_all, Amb_all domain Back     alignment and domain information 
 Score =  236 bits (605), Expect = 2e-77
 Identities = 107/207 (51%), Positives = 124/207 (59%), Gaps = 28/207 (13%)

Query: 116 DMVIRLKN--ELIMNSFKTIDGRGAKVEIANGPCITIQGVSHVIIHGISIHDCKPGKSGQ 173
           D+ I L N   +I+NS KTIDGRG+KVEI  G  +TI+ VS+VII  ++IHD KP     
Sbjct: 1   DVTITLDNAGTIIINSNKTIDGRGSKVEIKGG-GLTIKSVSNVIIRNLTIHDPKPVY--- 56

Query: 174 VRSSPDHVGRRGGSDGDAIDIFASSYVWVDHCYLARAA---------DGLIDVIHASTAV 224
                       GSDGDAI I  SS VW+DH  L+            DGLID+ + ST V
Sbjct: 57  ------------GSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYV 104

Query: 225 TISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRY 284
           TISNN F  H KVMLLGH+D  T D  M+VTIA N+FG  L +R PRVR GY HV NN Y
Sbjct: 105 TISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFG-NLRQRAPRVRFGYVHVYNNYY 163

Query: 285 EDWKMYAIGGSANPTIFSEGNYFMASN 311
             W  YAIGG    TI SEGNYF A  
Sbjct: 164 TGWTSYAIGGRMGATILSEGNYFEAPI 190

Length = 190
>gnl|CDD|215986 pfam00544, Pec_lyase_C, Pectate lyase Back     alignment and domain information
>gnl|CDD|226384 COG3866, PelB, Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 389
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 100.0
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 100.0
smart00656190 Amb_all Amb_all domain. 100.0
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.84
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.38
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.21
PLN02218431 polygalacturonase ADPG 98.16
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.07
PLN03003456 Probable polygalacturonase At3g15720 98.02
PLN02188404 polygalacturonase/glycoside hydrolase family prote 98.01
PLN02155394 polygalacturonase 97.96
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 97.9
PLN02793443 Probable polygalacturonase 97.9
PLN03010409 polygalacturonase 97.85
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.72
PLN02218431 polygalacturonase ADPG 97.69
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.57
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 97.49
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 97.48
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.41
PLN03003456 Probable polygalacturonase At3g15720 97.41
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.37
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.29
PLN02480343 Probable pectinesterase 97.14
PLN03010409 polygalacturonase 97.12
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 97.03
PLN02155394 polygalacturonase 96.99
PLN02793443 Probable polygalacturonase 96.96
PLN02188404 polygalacturonase/glycoside hydrolase family prote 96.86
PLN02682369 pectinesterase family protein 96.6
smart00656190 Amb_all Amb_all domain. 96.43
PLN02197588 pectinesterase 96.3
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 96.25
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 96.15
PLN02176340 putative pectinesterase 96.09
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.06
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 95.97
PLN02665366 pectinesterase family protein 95.91
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 95.63
PLN02432293 putative pectinesterase 95.62
PLN02634359 probable pectinesterase 95.17
PLN02416541 probable pectinesterase/pectinesterase inhibitor 95.15
PLN02773317 pectinesterase 94.99
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 94.97
PLN02304379 probable pectinesterase 94.87
PLN02301548 pectinesterase/pectinesterase inhibitor 94.86
PLN02201520 probable pectinesterase/pectinesterase inhibitor 94.74
PLN02217670 probable pectinesterase/pectinesterase inhibitor 94.74
PLN02488509 probable pectinesterase/pectinesterase inhibitor 94.66
PLN02671359 pectinesterase 94.65
PLN02506537 putative pectinesterase/pectinesterase inhibitor 94.46
PLN02170529 probable pectinesterase/pectinesterase inhibitor 94.4
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 94.31
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 94.29
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 94.16
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 94.15
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 94.11
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 94.02
PLN02484587 probable pectinesterase/pectinesterase inhibitor 93.89
PLN02916502 pectinesterase family protein 93.88
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 93.74
PLN02314586 pectinesterase 93.59
PLN02313587 Pectinesterase/pectinesterase inhibitor 93.57
PLN02468565 putative pectinesterase/pectinesterase inhibitor 93.4
PLN02497331 probable pectinesterase 93.36
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 93.29
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 92.25
PRK10531422 acyl-CoA thioesterase; Provisional 91.91
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 87.15
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 87.01
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 86.58
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 81.87
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-61  Score=461.77  Aligned_cols=276  Identities=31%  Similarity=0.423  Sum_probs=220.4

Q ss_pred             CCCCCCCCCcEEEeCCCCCCCCCCCchhhhhhhhcCCCeEEEEeeceEEEec------ceEEecCCceEEeeCceeEEcC
Q 047672           71 KGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLK------NELIMNSFKTIDGRGAKVEIAN  144 (389)
Q Consensus        71 ~~ttGG~gG~vv~VT~~~d~~~~~~pGtLr~a~~~~~p~~Ivf~~~~~I~l~------~~L~I~snkTI~G~ga~~~i~g  144 (389)
                      .+||||.+|.+++|++.+|         |...+...+|.++++-..|+|++.      .+|.+.|||||.|.|+++++.|
T Consensus        46 ~GTtGG~~g~~v~v~ta~~---------l~~~~sa~~~~t~ii~v~Gti~~s~ps~~k~~iki~sNkTivG~g~~a~~~g  116 (345)
T COG3866          46 TGTTGGSGGDIVTVRTAND---------LETYLSASGKYTVIIVVKGTITASTPSDKKITIKIGSNKTIVGSGADATLVG  116 (345)
T ss_pred             CCcccCCCCcEEEEeeHHH---------HHHHhhccCceEEEEEEcceEeccCCCCceEEEeeccccEEEeeccccEEEe
Confidence            3899999999999999999         888899999984444445678876      5677889999999999999987


Q ss_pred             CceEEEeccccEEEEccEEEeccCCCCCceecCCCCCCCCCCCCCCeEEe-eCCceEEEeeeeeec--------CCCCee
Q 047672          145 GPCITIQGVSHVIIHGISIHDCKPGKSGQVRSSPDHVGRRGGSDGDAIDI-FASSYVWVDHCYLAR--------AADGLI  215 (389)
Q Consensus       145 G~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~~~~~~g~~~~~~gDaI~i-~~s~nVWIDHcs~s~--------~~Dgli  215 (389)
                      | ||.|+.+.|||||||+|++...+                ....|+|+| .+++|||||||+|+.        ..||++
T Consensus       117 ~-gl~i~~a~NVIirNltf~~~~~~----------------d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~  179 (345)
T COG3866         117 G-GLKIRDAGNVIIRNLTFEGFYQG----------------DPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLV  179 (345)
T ss_pred             c-eEEEEeCCcEEEEeeEEEeeccC----------------CCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccE
Confidence            4 99999999999999999986421                123699999 679999999999999        799999


Q ss_pred             EEeecCeeEEEeCcEecccceeEEeCCCCcc-cCCCceEEEEeceEEcCCCCCcCCccccceEEEecceeeCCcceEEee
Q 047672          216 DVIHASTAVTISNNCFEQHDKVMLLGHNDQF-TADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVANNRYEDWKMYAIGG  294 (389)
Q Consensus       216 Di~~~s~~VTISnn~f~~H~k~~LiG~sd~~-~~d~~~~VT~hhN~fg~~~~~R~Pr~R~G~~Hv~NN~y~n~~~yai~~  294 (389)
                      |+++++++||||||+|++|+|.+|+|.+|+. .+|++.+|||||||| +|+.||+||+|||.+|||||||+....|++..
T Consensus       180 Dik~~AnyITiS~n~fhdh~Kssl~G~sD~~~~~~~~~kvT~hhNyF-kn~~qR~PriRfG~vHvyNNYy~~~~~~g~a~  258 (345)
T COG3866         180 DIKKDANYITISYNKFHDHDKSSLLGSSDSSNYDDGKYKVTIHHNYF-KNLYQRGPRIRFGMVHVYNNYYEGNPKFGVAI  258 (345)
T ss_pred             EeccCCcEEEEEeeeeecCCeeeeeccCCcccccCCceeEEEecccc-ccccccCCceEeeEEEEeccccccCcccceEE
Confidence            9999999999999999999999999999984 456789999999999 99999999999999999999999766565555


Q ss_pred             CCC--ceEEeeccEEEcCCCCCCcceeeeccCCCCCcceEEecCCeecCceee--ccCCCCCCCCCCCCCcceeccCCCC
Q 047672          295 SAN--PTIFSEGNYFMASNDQNTKEVTKRESYGGWKSWKWRTSKDVFLNGAYF--VPSGYGSCAPNYSRAQSFVVAPGAM  370 (389)
Q Consensus       295 ~~~--~~i~~egN~F~~~~~~~~k~vt~~~~~~~~~~w~~~s~~d~~~nGa~~--~~sG~~~~~~~y~~~~~~~~~~a~~  370 (389)
                      +++  ++|++|+|||++...+..-    .+.....+.  |..+-+.++++.-.  +..+...+.|  +..|+|+++|.+.
T Consensus       259 ~iG~~AkiyvE~NyF~~~~~~~~f----~dt~~~~GY--~~~d~gsy~~~s~~~~~~~~G~~w~p--s~~Y~Ytvd~~~d  330 (345)
T COG3866         259 TIGTSAKIYVENNYFENGSEGLGF----LDTKGTSGY--ANQDSGSYLNSSKSMSVRAGGVTWNP--SSYYSYTVDPPED  330 (345)
T ss_pred             eeccceEEEEecceeccCCCCcee----eecCCccce--EEeccCceecccCCcccccCCccCCC--CCCcccccCChHH
Confidence            555  9999999999997543211    122221133  33344444443221  2211122444  5667899999999


Q ss_pred             hhh-hhcccCcC
Q 047672          371 VPA-LTANAGPL  381 (389)
Q Consensus       371 v~~-~~~~AG~~  381 (389)
                      |++ |+.+||+-
T Consensus       331 Vks~Vt~yAGaG  342 (345)
T COG3866         331 VKSFVTNYAGAG  342 (345)
T ss_pred             hhhhhhccccce
Confidence            998 78999963

>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1pxz_A346 1.7 Angstrom Crystal Structure Of Jun A 1, The Majo 6e-82
3zsc_A340 Catalytic Function And Substrate Recognition Of The 1e-16
1vbl_A416 Structure Of The Thermostable Pectate Lyase Pl 47 L 4e-15
1jrg_A361 Crystal Structure Of The R3 Form Of Pectate Lyase A 8e-14
1pcl_A355 Unusual Structural Features In The Parallel Beta-He 9e-13
1ooc_A361 Mutations In The T1.5 Loop Of Pectate Lyase A Lengt 1e-12
1bn8_A420 Bacillus Subtilis Pectate Lyase Length = 420 2e-11
2bsp_A420 Bacillus Subtilis Pectate Lyase R279k Mutant Length 5e-11
3krg_A399 Structural Insights Into Substrate Specificity And 1e-10
2nzm_A399 Hexasaccharide I Bound To Bacillus Subtilis Pectate 2e-10
3vmv_A326 Crystal Structure Of Pectate Lyase Bsp165pela From 5e-10
2qxz_A330 Pectate Lyase R236f From Xanthomonas Campestris Len 5e-07
2qy1_A330 Pectate Lyase A31g/r236f From Xanthomonas Campestri 5e-07
2qx3_A330 Structure Of Pectate Lyase Ii From Xanthomonas Camp 1e-06
1plu_A353 Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu 1e-04
2ewe_A353 Crystal Structure Of Pectate Lyase C R218k Mutant I 3e-04
>pdb|1PXZ|A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  301 bits (770), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 163/343 (47%), Positives = 199/343 (58%), Gaps = 7/343 (2%)
Query: 43  NVIDSCWRAKSNWAVNRKALTDCVVXXXXXXXXXXXXAIYVVTDPSDDPVNPKLGTLRYG 102
           N IDSCWR  SNW  NR  L DC V              Y VT   D+PVNP  GTLRYG
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYG 61
Query: 103 VIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIANG-PCITIQXXXXXXXXXX 161
             + K LWIIF+++M I+LK  L +   KTIDGRGA V + NG PC+ ++          
Sbjct: 62  ATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSL 121
Query: 162 XXXDCKPGKSGQVRSSPDHVGRR--GGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIH 219
               C     G V  S + +G       DGDAI +   +  W+DH  L+  +DGLIDV  
Sbjct: 122 HIHGCNTSVLGDVLVS-ESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTL 180
Query: 220 ASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHV 279
            ST +TISNN F  H KVMLLGH+D +  DK MKVT+AFN FGP   +RMPR R G  HV
Sbjct: 181 GSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV 240
Query: 280 ANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKR---ESYGGWKSWKWRTSK 336
           ANN Y+ W +YAIGGS+NPTI SEGN F A ++   KEVTKR   ES     +W WR+++
Sbjct: 241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTR 300
Query: 337 DVFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAG 379
           D F+NGAYFV SG       Y+  ++F V  G   P LT NAG
Sbjct: 301 DAFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAG 343
>pdb|3ZSC|A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima Length = 340 Back     alignment and structure
>pdb|1VBL|A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 Length = 416 Back     alignment and structure
>pdb|1JRG|A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi Length = 361 Back     alignment and structure
>pdb|1PCL|A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases Length = 355 Back     alignment and structure
>pdb|1OOC|A Chain A, Mutations In The T1.5 Loop Of Pectate Lyase A Length = 361 Back     alignment and structure
>pdb|1BN8|A Chain A, Bacillus Subtilis Pectate Lyase Length = 420 Back     alignment and structure
>pdb|2BSP|A Chain A, Bacillus Subtilis Pectate Lyase R279k Mutant Length = 420 Back     alignment and structure
>pdb|3KRG|A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase Length = 399 Back     alignment and structure
>pdb|2NZM|A Chain A, Hexasaccharide I Bound To Bacillus Subtilis Pectate Lyase Length = 399 Back     alignment and structure
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 Length = 326 Back     alignment and structure
>pdb|2QXZ|A Chain A, Pectate Lyase R236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QY1|A Chain A, Pectate Lyase A31g/r236f From Xanthomonas Campestris Length = 330 Back     alignment and structure
>pdb|2QX3|A Chain A, Structure Of Pectate Lyase Ii From Xanthomonas Campestris Pv. Campestris Str. Atcc 33913 Length = 330 Back     alignment and structure
>pdb|1PLU|A Chain A, Pectate Lyase C From Erwinia Chrysanthemi With 1 Lu+3 Ion In The Putative Calcium Binding Site Length = 353 Back     alignment and structure
>pdb|2EWE|A Chain A, Crystal Structure Of Pectate Lyase C R218k Mutant In Complex With Pentagalacturonic Acid Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query389
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 1e-135
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 3e-90
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 2e-83
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 3e-79
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 6e-77
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 9e-69
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 8e-66
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 3e-65
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 6e-63
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 1e-61
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 5e-55
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Length = 346 Back     alignment and structure
 Score =  390 bits (1003), Expect = e-135
 Identities = 176/345 (51%), Positives = 215/345 (62%), Gaps = 5/345 (1%)

Query: 43  NVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYG 102
           N IDSCWR  SNW  NR  L DC VGFG  T+GGK G  Y VT   D+PVNP  GTLRYG
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYG 61

Query: 103 VIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIA-NGPCITIQGVSHVIIHGI 161
             + K LWIIF+++M I+LK  L +   KTIDGRGA V +   GPC+ ++ VSHVI+H +
Sbjct: 62  ATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSL 121

Query: 162 SIHDCKPGKSGQVRSSP-DHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHA 220
            IH C     G V  S    V      DGDAI +   +  W+DH  L+  +DGLIDV   
Sbjct: 122 HIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLG 181

Query: 221 STAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVA 280
           ST +TISNN F  H KVMLLGH+D +  DK MKVT+AFN FGP   +RMPR R G  HVA
Sbjct: 182 STGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVA 241

Query: 281 NNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYGG---WKSWKWRTSKD 337
           NN Y+ W +YAIGGS+NPTI SEGN F A ++   KEVTKR          +W WR+++D
Sbjct: 242 NNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRD 301

Query: 338 VFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPLS 382
            F+NGAYFV SG       Y+  ++F V  G   P LT NAG ++
Sbjct: 302 AFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT 346
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Length = 340 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Length = 361 Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Length = 326 Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Length = 355 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Length = 330 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Length = 359 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Length = 399 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Length = 416 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Length = 353 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Length = 359 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 100.0
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 100.0
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 100.0
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 100.0
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 100.0
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 100.0
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 100.0
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 100.0
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 100.0
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 100.0
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 98.46
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 98.39
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 98.29
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.21
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.17
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.16
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 98.15
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.13
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 98.1
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 98.1
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 98.09
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.08
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 98.06
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 98.05
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 98.04
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.04
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 98.01
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 97.94
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 97.94
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 97.92
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 97.87
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 97.77
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 97.71
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 97.65
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 97.41
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 97.37
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.29
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.23
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 97.21
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 97.21
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.19
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 97.13
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.12
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 97.05
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 96.97
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 96.93
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 96.91
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 96.89
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 96.89
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 96.89
2inu_A410 Insulin fructotransferase; right-handed parallel b 96.72
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 96.53
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.49
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 96.36
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.21
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 95.96
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 95.95
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 95.93
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 95.57
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 95.55
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 95.31
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 94.71
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 94.65
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 92.53
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 89.79
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 85.74
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
Probab=100.00  E-value=7.1e-101  Score=765.47  Aligned_cols=341  Identities=52%  Similarity=0.896  Sum_probs=325.5

Q ss_pred             cccccchhccCcchhcccccccCCCccccCCCCCCCCCcEEEeCCCCCCCCCCCchhhhhhhhcCCCeEEEEeeceEEEe
Q 047672           42 MNVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRL  121 (389)
Q Consensus        42 ~n~id~cwr~~~~w~~~r~~la~~a~Gfg~~ttGG~gG~vv~VT~~~d~~~~~~pGtLr~a~~~~~p~~Ivf~~~~~I~l  121 (389)
                      +||||+||||+++|+.+||+||+||+|||++||||+||++|+||+++|++++|+|||||+|+++++|+||+|+++|+|+|
T Consensus         1 ~~~~~~c~~~~~~w~~~~~~~~~~a~Gfg~~ttGG~gG~v~~VT~~~d~~~~~~~GsLr~av~~~~P~~Ivf~~~g~I~l   80 (346)
T 1pxz_A            1 DNPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKL   80 (346)
T ss_dssp             CCTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECC
T ss_pred             CCccchhhccCcchhhhhhhcccCCccccCCCcCCCCccEEEECChHHcccccCcchhHHHhccCCCeEEEEcCCcEEec
Confidence            48899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEecCCceEEeeCceeEEcC-CceEEEeccccEEEEccEEEeccCCCCCce-ecCCCCCCCCCCCCCCeEEeeCCce
Q 047672          122 KNELIMNSFKTIDGRGAKVEIAN-GPCITIQGVSHVIIHGISIHDCKPGKSGQV-RSSPDHVGRRGGSDGDAIDIFASSY  199 (389)
Q Consensus       122 ~~~L~I~snkTI~G~ga~~~i~g-G~gi~i~~a~NVIIrnL~i~~~~~~~~g~v-~~~~~~~g~~~~~~gDaI~i~~s~n  199 (389)
                      +.+|+|.|||||+|+|++++|.| |+||+|++++|||||||+|+++.|..++.| +++++|+|.+..+++|+|+|++++|
T Consensus        81 ~~~l~V~sn~TI~G~ga~~~i~G~G~gi~i~~a~NVIIrnl~i~~~~~~~~~~I~~~~~~~~g~~~~~~~DaI~i~~s~n  160 (346)
T 1pxz_A           81 KMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTN  160 (346)
T ss_dssp             SSCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEE
T ss_pred             CccEEecCCeEEEccCCceEEeCCcceEEEEccCCEEEEeeEEEeeccCCCceEEeccCcccccccCCCCCEEEEecCce
Confidence            99999999999999999999987 689999999999999999999998877767 9999999988899999999999999


Q ss_pred             EEEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCccccceEEE
Q 047672          200 VWVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHV  279 (389)
Q Consensus       200 VWIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R~G~~Hv  279 (389)
                      ||||||+|+|+.||++|+++++++||||||+|++|+|+||+|++|+.+.|+.++||||||+||+++.+|+||+|+|++|+
T Consensus       161 VwIDHcs~s~~~Dg~id~~~~s~~vTISnn~f~~H~k~~l~G~sd~~~~d~~~~vT~~~N~f~~~~~~R~Pr~r~g~~hv  240 (346)
T 1pxz_A          161 AWIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHV  240 (346)
T ss_dssp             EEEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEE
T ss_pred             EEEEeeEEecCCCCcEeeccCcceEEEEeeEEecCCceeEECCCCccccCCceEEEEEeeEEeCCccccCccEecceEEE
Confidence            99999999999999999999999999999999999999999999988888889999999999999999999999999999


Q ss_pred             ecceeeCCcceEEeeCCCceEEeeccEEEcCCCCCCcceeeeccCC---CCCcceEEecCCeecCceeeccCCCCCCCCC
Q 047672          280 ANNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYG---GWKSWKWRTSKDVFLNGAYFVPSGYGSCAPN  356 (389)
Q Consensus       280 ~NN~y~n~~~yai~~~~~~~i~~egN~F~~~~~~~~k~vt~~~~~~---~~~~w~~~s~~d~~~nGa~~~~sG~~~~~~~  356 (389)
                      +||||++|.+|++++++++++++|+|||++++++.+|+|++|..+.   +|++|+|++++|+|+||++|.++|.....++
T Consensus       241 ~NN~~~~~~~~~i~~~~~~~i~~egN~F~~~~~~~~k~v~~~~~~~~~~~~~~~~~~~~g~~~~nG~~~~~s~~~~~~~~  320 (346)
T 1pxz_A          241 ANNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNI  320 (346)
T ss_dssp             ESCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCC
T ss_pred             EeeEEEcccceEEeccCCceEEEECCEEECCCCCcccccEEEeccCCccccccccEecCCCeEEeceEecCCCCCccCCC
Confidence            9999999999999999999999999999999998889999986543   4789999999999999999999998666667


Q ss_pred             CCCCcceeccCCCChhhhhcccCcCC
Q 047672          357 YSRAQSFVVAPGAMVPALTANAGPLS  382 (389)
Q Consensus       357 y~~~~~~~~~~a~~v~~~~~~AG~~~  382 (389)
                      |+++|+|+++||++|++|+++||||.
T Consensus       321 y~~~~~~~~~~~~~v~~~~~~aG~~~  346 (346)
T 1pxz_A          321 YNSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CCTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             CCcccccccCCHHHHHHHhhhccCCC
Confidence            99999999999999999999999984
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 389
d1pxza_346 b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark 1e-137
d1pe9a_361 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 8e-78
d1qcxa_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 2e-61
d1bn8a_399 b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [Ta 7e-59
d1idka_359 b.80.1.2 (A:) Pectin lyase {Aspergillus niger, typ 1e-53
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 1e-41
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-04
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Length = 346 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

 Score =  394 bits (1012), Expect = e-137
 Identities = 177/345 (51%), Positives = 216/345 (62%), Gaps = 5/345 (1%)

Query: 43  NVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYG 102
           N IDSCWR  SNW  NR  L DC VGFG  T+GGK G  Y VT   D+PVNP  GTLRYG
Sbjct: 2   NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYG 61

Query: 103 VIQTKPLWIIFAKDMVIRLKNELIMNSFKTIDGRGAKVEIAN-GPCITIQGVSHVIIHGI 161
             + K LWIIF+++M I+LK  L +   KTIDGRGA V + N GPC+ ++ VSHVI+H +
Sbjct: 62  ATREKALWIIFSQNMNIKLKMPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSL 121

Query: 162 SIHDCKPGKSGQVRSSP-DHVGRRGGSDGDAIDIFASSYVWVDHCYLARAADGLIDVIHA 220
            IH C     G V  S    V      DGDAI +   +  W+DH  L+  +DGLIDV   
Sbjct: 122 HIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNAWIDHNSLSDCSDGLIDVTLG 181

Query: 221 STAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVA 280
           ST +TISNN F  H KVMLLGH+D +  DK MKVT+AFN FGP   +RMPR R G  HVA
Sbjct: 182 STGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVA 241

Query: 281 NNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESY---GGWKSWKWRTSKD 337
           NN Y+ W +YAIGGS+NPTI SEGN F A ++   KEVTKR          +W WR+++D
Sbjct: 242 NNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRD 301

Query: 338 VFLNGAYFVPSGYGSCAPNYSRAQSFVVAPGAMVPALTANAGPLS 382
            F+NGAYFV SG       Y+  ++F V  G   P LT NAG ++
Sbjct: 302 AFINGAYFVSSGKTEETNIYNSNEAFKVENGNAAPQLTKNAGVVT 346
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Length = 361 Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Length = 399 Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Length = 359 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query389
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 100.0
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 100.0
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 100.0
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 100.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 100.0
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 100.0
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.4
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 98.29
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.16
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 98.05
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.97
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 97.78
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.71
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.66
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.62
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 97.5
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 97.45
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 97.45
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 97.28
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 97.21
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.09
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 96.97
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 96.77
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 96.66
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.49
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 95.43
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.41
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 95.35
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 95.0
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 94.57
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 94.47
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 94.15
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 91.9
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 90.82
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 89.82
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Pectate lyase-like
domain: Major pollen allergen Jun a 1
species: Ozark white cedar (Juniperus ashei) [TaxId: 13101]

Probab=100.00  E-value=6.6e-95  Score=720.19  Aligned_cols=340  Identities=52%  Similarity=0.899  Sum_probs=310.4

Q ss_pred             ccccchhccCcchhcccccccCCCccccCCCCCCCCCcEEEeCCCCCCCCCCCchhhhhhhhcCCCeEEEEeeceEEEec
Q 047672           43 NVIDSCWRAKSNWAVNRKALTDCVVGFGKGTLGGKYGAIYVVTDPSDDPVNPKLGTLRYGVIQTKPLWIIFAKDMVIRLK  122 (389)
Q Consensus        43 n~id~cwr~~~~w~~~r~~la~~a~Gfg~~ttGG~gG~vv~VT~~~d~~~~~~pGtLr~a~~~~~p~~Ivf~~~~~I~l~  122 (389)
                      ||||+||||+|||+++||+||+||||||++||||+||+||+|||++|++++|+|||||+|+++++||||||+++|+|+|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~a~Gfg~~ttGG~gG~v~~Vt~l~D~~~~~g~GsLr~a~~~~~pr~IvF~vsg~I~l~   81 (346)
T d1pxza_           2 NPIDSCWRGDSNWDQNRMKLADCAVGFGSSTMGGKGGDFYTVTSTDDNPVNPTPGTLRYGATREKALWIIFSQNMNIKLK   81 (346)
T ss_dssp             CTTHHHHHSSCCTTTCGGGGGGCCCGGGTTCCTTTTSEEEEECCCCCCTTSCCTTSHHHHHHCSSCEEEEESSCEEECCS
T ss_pred             CCcccccCCCCCHHHHHHhhhhccccccCCCcCCCCceEEEecChhhccccCCCccHHHHhhCCCCeEEEEeccEEEecc
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEecCCceEEeeCceeEEcC-CceEEEeccccEEEEccEEEeccCCCCCceec-CCCCCCCCCCCCCCeEEeeCCceE
Q 047672          123 NELIMNSFKTIDGRGAKVEIAN-GPCITIQGVSHVIIHGISIHDCKPGKSGQVRS-SPDHVGRRGGSDGDAIDIFASSYV  200 (389)
Q Consensus       123 ~~L~I~snkTI~G~ga~~~i~g-G~gi~i~~a~NVIIrnL~i~~~~~~~~g~v~~-~~~~~g~~~~~~gDaI~i~~s~nV  200 (389)
                      .+|.|+|||||+|+|++++|.+ |.+|.+.+++|||||||+||++.+..++.+.. +..+.+....+++|+|+|++++||
T Consensus        82 ~~L~v~sn~TI~G~ga~~~i~~~G~~i~i~~~~NVIirnl~i~~~~~~~~~~~~~~~~~~~~~~~~~~gDai~i~~s~nv  161 (346)
T d1pxza_          82 MPLYVAGHKTIDGRGADVHLGNGGPCLFMRKVSHVILHSLHIHGCNTSVLGDVLVSESIGVEPVHAQDGDAITMRNVTNA  161 (346)
T ss_dssp             SCEECCSSEEEECTTSCEEEETTSCCEEEESCEEEEEESCEEECCCCCCSEEEEEETTTEEEEECCCCCCSEEEESCEEE
T ss_pred             ceEEeCCCceEEccCCCceEeeecceEEEecCCEEEEeceEEecCcccCCcccccccccCccccccCCCceeeeecCceE
Confidence            9999999999999999998876 45799999999999999999988766554322 223334455788999999999999


Q ss_pred             EEeeeeeecCCCCeeEEeecCeeEEEeCcEecccceeEEeCCCCcccCCCceEEEEeceEEcCCCCCcCCccccceEEEe
Q 047672          201 WVDHCYLARAADGLIDVIHASTAVTISNNCFEQHDKVMLLGHNDQFTADKIMKVTIAFNHFGPGLIERMPRVRIGYAHVA  280 (389)
Q Consensus       201 WIDHcs~s~~~DgliDi~~~s~~VTISnn~f~~H~k~~LiG~sd~~~~d~~~~VT~hhN~fg~~~~~R~Pr~R~G~~Hv~  280 (389)
                      |||||+|+|+.||+||+++++++||||||+|++|+|++|+|+++....++.++||||||+|..+..+|+|++|+|++|++
T Consensus       162 wIDH~s~s~~~D~~idi~~~s~~vTis~~~f~~~~~~~~~G~~~~~~~~~~~~vT~hhN~~~~n~~r~~p~~r~g~~hv~  241 (346)
T d1pxza_         162 WIDHNSLSDCSDGLIDVTLGSTGITISNNHFFNHHKVMLLGHDDTYDDDKSMKVTVAFNQFGPNAGQRMPRARYGLVHVA  241 (346)
T ss_dssp             EEESCEEECCSSEEEEEESSCEEEEEESCEEESEEEEEEESCCSSCGGGGGCEEEEESCEECSSEEECTTEEESSEEEEE
T ss_pred             EEECcEeeccccCceeEecCCEEEEEEeeEEccCccccccCCCcccccCCCceEEEEccccCCCcccCCCccccceEEEE
Confidence            99999999999999999999999999999999999999999999877778899999999996667888899999999999


Q ss_pred             cceeeCCcceEEeeCCCceEEeeccEEEcCCCCCCcceeeeccCC---CCCcceEEecCCeecCceeeccCCCCCCCCCC
Q 047672          281 NNRYEDWKMYAIGGSANPTIFSEGNYFMASNDQNTKEVTKRESYG---GWKSWKWRTSKDVFLNGAYFVPSGYGSCAPNY  357 (389)
Q Consensus       281 NN~y~n~~~yai~~~~~~~i~~egN~F~~~~~~~~k~vt~~~~~~---~~~~w~~~s~~d~~~nGa~~~~sG~~~~~~~y  357 (389)
                      ||||++|..|++++++++++++|+|||++++.+..|+++++....   .+.+|.|++++|.++||+++.++|.......|
T Consensus       242 NN~~~n~~~~~~~~~~~~~v~~e~N~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~d~~~nga~~~~sg~~~~~~~~  321 (346)
T d1pxza_         242 NNNYDPWNIYAIGGSSNPTILSEGNSFTAPSESYKKEVTKRIGCESPSACANWVWRSTRDAFINGAYFVSSGKTEETNIY  321 (346)
T ss_dssp             SCEECCCSSCSEEEESCCEEEEESCEEECCSCGGGCBSEEECSCSCHHHHTTSCEEEESCEEETTCBCCCBSCCCCCCCC
T ss_pred             CcEeecCccEEEeccCceEEEEEeeEEECCCCccceeeecccccCCccccccceeeccCceeeccceeccCCCccccccc
Confidence            999999999999999999999999999999998888888775432   36789999999999999999998876566678


Q ss_pred             CCCcceeccCCCChhhhhcccCcCC
Q 047672          358 SRAQSFVVAPGAMVPALTANAGPLS  382 (389)
Q Consensus       358 ~~~~~~~~~~a~~v~~~~~~AG~~~  382 (389)
                      .++|+|+++|++.|++|+++||||+
T Consensus       322 ~~~~~y~~~~as~V~~v~~~AGal~  346 (346)
T d1pxza_         322 NSNEAFKVENGNAAPQLTKNAGVVT  346 (346)
T ss_dssp             CTTTCCCCCCGGGHHHHTTTCSSCC
T ss_pred             cCccccccCCHHHHHhhhccCCCCC
Confidence            8888999999999999999999995
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure