Citrus Sinensis ID: 047678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPAVYSVAVASDEAVASLFSDDNPHACTIM
Secondary Structure (PSIPRED)
ccEEEEEEEcccccHHHHHHHHHHHcccccccEEEEEccccEEEEEEccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEcccccHHHHHHHHHHHHHcccccEEEEcccccEEEEEEEcccHHHHHHHHHHccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccEcc
Coil and Loop (DISEMBL)
mqlmvevrvpnldcegcaSKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGkaaepwpfpgyahfasfykypsyIVNHYydtygatngahtffhtpAVYSVAVASDEAVAslfsddnphactim
Flexible Loop (DISEMBL)
mqlmvevrvpnldcegcaskCKRALFklkgveeveiemevqkitvrgyaldeKKVLKAIKRAGkaaepwpfpGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPAVYSVAVASDEAVASlfsddnphactim
Low Complexity Region (SEG)
MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPavysvavasdeavasLFSDDNPHACTIM
Disordered region (IsUnstruct)
****VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPAVYSVAVASDEAVASLF***********
Disordered Region (DISOPRED)
*QLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPGYAHF*******************ATNGAHTFFHTPAVYSVAVASDEAVASLFSDDNPHACTIM
Disordered Region (DISEMBL)
MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPAVYSVAVASDEAVASLFSDDNPHACTIM
Disordered Region (DISPRO)
*QLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPAVYSVAVASDEAVASLFSDDNPHACTIM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPAVYSVAVASDEAVASLFSDDNPHACTIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q9SZN7	153	Heavy metal-associated is	no	no	0.911	0.810	0.358	1e-12

>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/134 (35%), Positives = 65/134 (48%), Gaps = 10/134 (7%)

Query: 5   VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
           VE++V  +DCEGC  K +R++  +KGV  V +E +  K+TV GY    K V +   R GK
Sbjct: 28  VEIKV-KMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHRTGK 86

Query: 65  AAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPAVYSVAVASDEAV--A 122
             E WP+  Y   A  Y    Y          A +G       P V  +A AS   V   
Sbjct: 87  KVELWPYVPYDVVAHPYAAGVY-------DKKAPSGYVRRVDDPGVSQLARASSTEVRYT 139

Query: 123 SLFSDDNPHACTIM 136
           + FSD+NP AC +M
Sbjct: 140 TAFSDENPAACVVM 153

Heavy-metal-binding protein. Binds lead, cadmium and copper. May be involved in heavy-metal transport.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
395146474	142	putative copper ion-binding protein [Lin	0.977	0.936	0.8	5e-60
356559811	138	PREDICTED: uncharacterized protein LOC10	1.0	0.985	0.869	3e-59
356559813	147	PREDICTED: uncharacterized protein LOC10	1.0	0.925	0.862	3e-59
255539449	136	copper ion binding protein, putative [Ri	0.985	0.985	0.823	3e-56
224137006	139	predicted protein [Populus trichocarpa]	1.0	0.978	0.877	6e-56
225470183	137	PREDICTED: uncharacterized protein LOC10	0.977	0.970	0.829	2e-54
302143885	172	unnamed protein product [Vitis vinifera]	0.977	0.773	0.829	2e-54
356529210	135	PREDICTED: uncharacterized protein LOC10	0.779	0.785	0.870	1e-48
21554311	140	unknown [Arabidopsis thaliana]	1.0	0.971	0.721	3e-43
297819512	140	hypothetical protein ARALYDRAFT_485255 [	1.0	0.971	0.728	5e-43

>gi|395146474|gb|AFN53631.1| putative copper ion-binding protein [Linum usitatissimum]

 Score =  235 bits (599), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 112/140 (80%), Positives = 124/140 (88%), Gaps = 7/140 (5%)

Query: 4   MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
           MVEVRVPNLDCEGCASK ++ALFKLKGVEEVE+EM +QKITVRGYAL+EKK+LKAIKRAG
Sbjct: 3   MVEVRVPNLDCEGCASKLRKALFKLKGVEEVEVEMAIQKITVRGYALEEKKILKAIKRAG 62

Query: 64  KAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYG-------ATNGAHTFFHTPAVYSVAVA 116
           K+AEPWPFPGYAHF+SFYKYP+YIVNHYYD Y         +N  H+FF TPAVYSVAVA
Sbjct: 63  KSAEPWPFPGYAHFSSFYKYPTYIVNHYYDPYKNLGGGGNNSNSVHSFFQTPAVYSVAVA 122

Query: 117 SDEAVASLFSDDNPHACTIM 136
           SDEAVAS+FSDDNPHAC IM
Sbjct: 123 SDEAVASIFSDDNPHACAIM 142

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559811|ref|XP_003548190.1| PREDICTED: uncharacterized protein LOC100802676 isoform 1 [Glycine max]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 120/138 (86%), Positives = 127/138 (92%), Gaps = 2/138 (1%)

Query: 1   MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIK 60
           M  M+EVRVPNLDCEGCASK K+ALFKLKGV+EVE+EME QKITVRGY L+EKKVLKAIK
Sbjct: 1   MSNMIEVRVPNLDCEGCASKLKKALFKLKGVDEVEVEMEAQKITVRGYGLEEKKVLKAIK 60

Query: 61  RAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYG--ATNGAHTFFHTPAVYSVAVASD 118
           RAGKAAEPWPFPG+AHF+SFYKYPSYIVNHYYD Y   ATNG HTFFHTPAVYSVAVASD
Sbjct: 61  RAGKAAEPWPFPGHAHFSSFYKYPSYIVNHYYDAYKSEATNGVHTFFHTPAVYSVAVASD 120

Query: 119 EAVASLFSDDNPHACTIM 136
           EA ASLFSDDNPHACTIM
Sbjct: 121 EAFASLFSDDNPHACTIM 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559813|ref|XP_003548191.1| PREDICTED: uncharacterized protein LOC100802676 isoform 2 [Glycine max]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 119/138 (86%), Positives = 128/138 (92%), Gaps = 2/138 (1%)

Query: 1   MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIK 60
           ++ M+EVRVPNLDCEGCASK K+ALFKLKGV+EVE+EME QKITVRGY L+EKKVLKAIK
Sbjct: 10  LRNMIEVRVPNLDCEGCASKLKKALFKLKGVDEVEVEMEAQKITVRGYGLEEKKVLKAIK 69

Query: 61  RAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYG--ATNGAHTFFHTPAVYSVAVASD 118
           RAGKAAEPWPFPG+AHF+SFYKYPSYIVNHYYD Y   ATNG HTFFHTPAVYSVAVASD
Sbjct: 70  RAGKAAEPWPFPGHAHFSSFYKYPSYIVNHYYDAYKSEATNGVHTFFHTPAVYSVAVASD 129

Query: 119 EAVASLFSDDNPHACTIM 136
           EA ASLFSDDNPHACTIM
Sbjct: 130 EAFASLFSDDNPHACTIM 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539449|ref|XP_002510789.1| copper ion binding protein, putative [Ricinus communis] gi|223549904|gb|EEF51391.1| copper ion binding protein, putative [Ricinus communis]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 112/136 (82%), Positives = 124/136 (91%), Gaps = 2/136 (1%)

Query: 3   LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRA 62
           +M+EVRVPNLDC GCASK K+AL KLKG EEVE+EME+QKITVRGY L+EKKVLKAIKRA
Sbjct: 1   MMIEVRVPNLDCLGCASKLKKALLKLKGAEEVEVEMEIQKITVRGYGLEEKKVLKAIKRA 60

Query: 63  GKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTYG--ATNGAHTFFHTPAVYSVAVASDEA 120
           GKAAE WPFPG++HF SFYKYP+YIVN YYD+Y   ATNG HTFFHTPAVYSVAVASDEA
Sbjct: 61  GKAAEAWPFPGHSHFTSFYKYPNYIVNRYYDSYKNVATNGVHTFFHTPAVYSVAVASDEA 120

Query: 121 VASLFSDDNPHACTIM 136
           +ASLFSDDNPHAC+IM
Sbjct: 121 IASLFSDDNPHACSIM 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137006|ref|XP_002322470.1| predicted protein [Populus trichocarpa] gi|222869466|gb|EEF06597.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 122/139 (87%), Positives = 130/139 (93%), Gaps = 3/139 (2%)

Query: 1   MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIK 60
           M LMVEVRVPNLDCEGCASK K+AL KLKG EEVE+EMEVQKITVRGYAL+EKKV+KAIK
Sbjct: 1   MSLMVEVRVPNLDCEGCASKLKKALLKLKGAEEVEVEMEVQKITVRGYALEEKKVIKAIK 60

Query: 61  RAGKAAEPWPFPGYAHFASFYKYPSYIVNHYYDTY---GATNGAHTFFHTPAVYSVAVAS 117
           RAGKAAEPWPFPGY+HFASFYKYP+YIVNHYYDTY    +TNG HTFFHTPAVYS+AVAS
Sbjct: 61  RAGKAAEPWPFPGYSHFASFYKYPTYIVNHYYDTYKNVASTNGVHTFFHTPAVYSLAVAS 120

Query: 118 DEAVASLFSDDNPHACTIM 136
           DEAVASLFSDDNPHACTIM
Sbjct: 121 DEAVASLFSDDNPHACTIM 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225470183|ref|XP_002268356.1| PREDICTED: uncharacterized protein LOC100245535 [Vitis vinifera]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 123/135 (91%), Gaps = 2/135 (1%)

Query: 4   MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
           MVEVRVPNLDCEGCASK K+ALFKLKGVEEV+IEME+QKITVRGY ++EKKVLKAIKRAG
Sbjct: 3   MVEVRVPNLDCEGCASKLKKALFKLKGVEEVDIEMEMQKITVRGYLVEEKKVLKAIKRAG 62

Query: 64  KAAEPWPFPGYAHFASFYKYPSYIVNHYYDTY--GATNGAHTFFHTPAVYSVAVASDEAV 121
           KA EPWPFPGY+HFASFYKYPS+IVNHYY+T   G  +  HTFF TPA+YSVAVASDEAV
Sbjct: 63  KAVEPWPFPGYSHFASFYKYPSHIVNHYYETSGNGVNSNVHTFFQTPAIYSVAVASDEAV 122

Query: 122 ASLFSDDNPHACTIM 136
           ASLFSD+N HACTIM
Sbjct: 123 ASLFSDENVHACTIM 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143885|emb|CBI22746.3| unnamed protein product [Vitis vinifera]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 112/135 (82%), Positives = 123/135 (91%), Gaps = 2/135 (1%)

Query: 4   MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
           MVEVRVPNLDCEGCASK K+ALFKLKGVEEV+IEME+QKITVRGY ++EKKVLKAIKRAG
Sbjct: 38  MVEVRVPNLDCEGCASKLKKALFKLKGVEEVDIEMEMQKITVRGYLVEEKKVLKAIKRAG 97

Query: 64  KAAEPWPFPGYAHFASFYKYPSYIVNHYYDTY--GATNGAHTFFHTPAVYSVAVASDEAV 121
           KA EPWPFPGY+HFASFYKYPS+IVNHYY+T   G  +  HTFF TPA+YSVAVASDEAV
Sbjct: 98  KAVEPWPFPGYSHFASFYKYPSHIVNHYYETSGNGVNSNVHTFFQTPAIYSVAVASDEAV 157

Query: 122 ASLFSDDNPHACTIM 136
           ASLFSD+N HACTIM
Sbjct: 158 ASLFSDENVHACTIM 172

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529210|ref|XP_003533189.1| PREDICTED: uncharacterized protein LOC100791018 [Glycine max]

 Score =  197 bits (502), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/108 (87%), Positives = 100/108 (92%), Gaps = 2/108 (1%)

Query: 31  VEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPGYAHFASFYKYPSYIVNH 90
           V+EVE+EME QKITV+GY L+EKKVLKAIKRAGKAAEPWPFPG+AHF+SFYKYPSYIVNH
Sbjct: 28  VDEVEVEMEAQKITVKGYGLEEKKVLKAIKRAGKAAEPWPFPGHAHFSSFYKYPSYIVNH 87

Query: 91  YYDTYG--ATNGAHTFFHTPAVYSVAVASDEAVASLFSDDNPHACTIM 136
           YYD Y   ATNG HTFFHTPAVYSVAVASDEA ASLFSDDNPHACTIM
Sbjct: 88  YYDAYKSEATNGVHTFFHTPAVYSVAVASDEAFASLFSDDNPHACTIM 135

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554311|gb|AAM63416.1| unknown [Arabidopsis thaliana]

 Score =  179 bits (454), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 114/140 (81%), Gaps = 4/140 (2%)

Query: 1   MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIK 60
           M + VE+RVPNLDCEGCASK ++ L KLKGVEEVE+EME QK+T RGY L+EKKVLKA++
Sbjct: 1   MSMTVEIRVPNLDCEGCASKLRKTLLKLKGVEEVEVEMETQKVTARGYRLEEKKVLKAVR 60

Query: 61  RAGKAAEPWPFP-GYAHFASFYKYPSYIVNHYYD---TYGATNGAHTFFHTPAVYSVAVA 116
           RAGKAAE WP+  G +HFASFYKYPSY+ NHYY        T G HTFFHTPAVYSVAVA
Sbjct: 61  RAGKAAELWPYRLGNSHFASFYKYPSYVTNHYYSDAHRTDPTGGVHTFFHTPAVYSVAVA 120

Query: 117 SDEAVASLFSDDNPHACTIM 136
            DE  AS+FSDDNPHACTIM
Sbjct: 121 GDEIAASMFSDDNPHACTIM 140

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819512|ref|XP_002877639.1| hypothetical protein ARALYDRAFT_485255 [Arabidopsis lyrata subsp. lyrata] gi|297323477|gb|EFH53898.1| hypothetical protein ARALYDRAFT_485255 [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (453), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/140 (72%), Positives = 114/140 (81%), Gaps = 4/140 (2%)

Query: 1   MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIK 60
           M + VE+RVPNLDCEGCASK K+ L KLKGVEEVE+EME QK+T RGY L+EKKVLKA++
Sbjct: 1   MSMSVEIRVPNLDCEGCASKLKKTLLKLKGVEEVEVEMETQKVTARGYRLEEKKVLKAVR 60

Query: 61  RAGKAAEPWPFP-GYAHFASFYKYPSYIVNHYYD---TYGATNGAHTFFHTPAVYSVAVA 116
           RAGKAAE WP+  G +HFASFYKYPSY+ NHYY        T G HTFFHTPAVYSVAVA
Sbjct: 61  RAGKAAELWPYRLGNSHFASFYKYPSYVTNHYYSDAHRTDPTGGVHTFFHTPAVYSVAVA 120

Query: 117 SDEAVASLFSDDNPHACTIM 136
            DE  AS+FSDDNPHACTIM
Sbjct: 121 GDEIAASMFSDDNPHACTIM 140

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2101343	140	AT3G48970 "AT3G48970" [Arabido	1.0	0.971	0.642	3e-46
TAIR|locus:4515103273	166	AT3G56891 [Arabidopsis thalian	0.588	0.481	0.487	4.9e-24
TAIR|locus:1005716648	178	AT2G18196 [Arabidopsis thalian	0.955	0.730	0.330	1.2e-17
TAIR|locus:2133544	150	AT4G08570 "AT4G08570" [Arabido	0.904	0.82	0.356	1.8e-16
TAIR|locus:2026336	152	HIPP20 "heavy metal associated	0.904	0.809	0.386	2.9e-16
TAIR|locus:2135277	158	AT4G39700 [Arabidopsis thalian	0.911	0.784	0.390	4.7e-16
TAIR|locus:2202265	159	AT1G06330 "AT1G06330" [Arabido	0.985	0.842	0.344	1.3e-15
TAIR|locus:2017759	152	HIPP22 "heavy metal associated	0.889	0.796	0.353	1.4e-14
TAIR|locus:2131561	153	HIPP25 "heavy metal associated	0.919	0.816	0.358	6.2e-14
TAIR|locus:4010713877	183	AT4G10465 [Arabidopsis thalian	0.919	0.683	0.355	7.9e-14

TAIR|locus:2101343 AT3G48970 "AT3G48970" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 90/140 (64%), Positives = 104/140 (74%)

Query:     1 MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIK 60
             M + VE+RVPNLDCEGCASK ++ L KLKGVEEVE+EME QK+T RGY L+EKKVLKA++
Sbjct:     1 MSMTVEIRVPNLDCEGCASKLRKTLLKLKGVEEVEVEMETQKVTARGYRLEEKKVLKAVR 60

Query:    61 RAGKAAEPWPFP-GYAHFASFYKYPSYIVNHYY-DTYGA--TNGAHTFFHTPXXXXXXXX 116
             RAGKAAE WP+  G +HFASFYKYPSY+ NHYY D +    T G HTFFHTP        
Sbjct:    61 RAGKAAELWPYRLGNSHFASFYKYPSYVTNHYYSDAHRTDPTGGVHTFFHTPADYSVAVA 120

Query:   117 XXXXXXXLFSDDNPHACTIM 136
                    +FSDDNPHACTIM
Sbjct:   121 GDEIAASMFSDDNPHACTIM 140

GO:0005507 "copper ion binding" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:4515103273 AT3G56891 [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
 Identities = 40/82 (48%), Positives = 60/82 (73%)

Query:     4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
             +VE+ V ++DC+GC  K +RA+ KL GV+ VEI+++ QK+TV GY +D ++VLK +KR G
Sbjct:    17 IVELLV-DMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGY-VDREEVLKMVKRTG 74

Query:    64 KAAEPWPFPGYAHFASFYKYPS 85
             + AE WPFP   ++  +Y YPS
Sbjct:    75 RTAEYWPFPYNGYYGDYYTYPS 96

GO:0005886 "plasma membrane" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:1005716648 AT2G18196 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
 Identities = 44/133 (33%), Positives = 72/133 (54%)

Query:     5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             ++++V  + C GC    K A++KL+GV+ VE+ +E++++TV GY ++ KKVLKA++RAGK
Sbjct:    48 IDLKV-RMCCSGCERVVKHAIYKLRGVDSVEVNLEMERVTVVGY-VERKKVLKAVRRAGK 105

Query:    65 AAEPWPFPGYA-HFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPXXXXXXXXXXXXXXX 123
              AE WP+P    +F S   Y       + ++Y      +                     
Sbjct:   106 RAEFWPYPDMPRYFTSSDHYFKDTTREFRESYNYYRHGYNLSDRHGNIHVTNRGDDKMSN 165

Query:   124 LFSDDNPHACTIM 136
              F+DDN HAC++M
Sbjct:   166 FFNDDNVHACSLM 178

GO:0005576 "extracellular region" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2133544 AT4G08570 "AT4G08570" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 47/132 (35%), Positives = 68/132 (51%)

Query:     5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             V +RV  +DCEGC  K K  L  +KGV+ V++++++QK+TV GY +D KKVL+A K   K
Sbjct:    28 VALRVARIDCEGCERKIKHVLSGVKGVKSVDVDVKLQKVTVTGY-IDPKKVLEAAKSTKK 86

Query:    65 AAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPXXXXXXXXXXXXXXXL 124
               E WP+  Y   A+ Y      ++  YD     N       T                +
Sbjct:    87 KVELWPYVPYTMVANPY------ISQAYDKKAPPNMVRKVPDT--ASVNETTVDDSYTIM 138

Query:   125 FSDDNPHACTIM 136
             FSD+NP++C IM
Sbjct:   139 FSDENPNSCAIM 150

GO:0005575 "cellular_component" evidence=ND

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2026336 HIPP20 "heavy metal associated isoprenylated plant protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 51/132 (38%), Positives = 70/132 (53%)

Query:     5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             V ++V  +DC+GC  + K A+  +KGV+ VE+  ++ K+TV GY ++ KKVLK I+R GK
Sbjct:    30 VNIKV-KMDCDGCERRVKNAVSSMKGVKSVEVNRKIHKVTVSGY-VEPKKVLKRIERTGK 87

Query:    65 AAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPXXXXXXXXXXXXXXXL 124
              AE WP+  Y   A    YP Y V  Y D   A  G                       L
Sbjct:    88 KAEIWPYVPYNMVA----YP-YAVGTY-DKK-APAGYVRKSEQSQLQLLPGAPENHYISL 140

Query:   125 FSDDNPHACTIM 136
             FSD+NP+ACT+M
Sbjct:   141 FSDENPNACTVM 152

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2135277 AT4G39700 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 52/133 (39%), Positives = 65/133 (48%)

Query:     5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             VE++V  +DC+GC  K K +L  LKGV+ VEI  + QK+TV GYA D  KVLK  K  GK
Sbjct:    34 VELKV-RMDCDGCVLKIKNSLSSLKGVKTVEINKKQQKVTVSGYA-DASKVLKKAKATGK 91

Query:    65 AAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFF-HTPXXXXXXXXXXXXXXX 123
              AE WP+  Y   A  Y      +   YD             +                 
Sbjct:    92 KAEIWPYVPYNLVAQPY------IAQAYDKKAPPGYVRKVDPNVTTGTMAVYYDDPSYTS 145

Query:   124 LFSDDNPHACTIM 136
             LFSDDNP+AC+IM
Sbjct:   146 LFSDDNPNACSIM 158

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2202265 AT1G06330 "AT1G06330" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 53/154 (34%), Positives = 80/154 (51%)

Query:     1 MQLM-VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAI 59
             +QL  +E+RV ++DC GC S+ K AL K++GV+ VEI+M  QK+TV GYA D+KKVLK +
Sbjct:     8 IQLQTIEMRV-HMDCVGCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYA-DQKKVLKKV 65

Query:    60 KRAGKAAEPWPFP-------GYAHFASFYKYPSYI---VNHY-------YDTYGATNGAH 102
             ++ G+ AE W  P       G +    ++  P      +NH        Y+ Y     ++
Sbjct:    66 RKTGRRAELWQLPYNPDHMGGSSSNGGYFYNPQGCNGPINHAAPVPTSSYNYYKHGYDSN 125

Query:   103 TFFHTPXXXXXXXXXXXXXXXLFSDDNPHACTIM 136
              +                    FSD+NP+AC+IM
Sbjct:   126 DYSSYRHHPVHASIFSHQTGSKFSDENPNACSIM 159

GO:0005507 "copper ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2017759 HIPP22 "heavy metal associated isoprenylated plant protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 47/133 (35%), Positives = 66/133 (49%)

Query:     5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             V ++V  +DC+GC  K K A+  +KG + VE+  ++ K+TV GY +D KKVLK ++  GK
Sbjct:    31 VNIKV-KIDCDGCERKIKNAVSSIKGAKSVEVNRKMHKVTVSGY-VDPKKVLKTVQSTGK 88

Query:    65 A-AEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPXXXXXXXXXXXXXXX 123
               AE WP+  Y   A    YP Y    Y D             +                
Sbjct:    89 KKAELWPYVPYTMVA----YP-YAAGAY-DKRAPPGFVRK---SEQAQAQPGSTDDKLMS 139

Query:   124 LFSDDNPHACTIM 136
             LFSD+NP+ACT+M
Sbjct:   140 LFSDENPNACTVM 152

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2131561 HIPP25 "heavy metal associated isoprenylated plant protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 48/134 (35%), Positives = 63/134 (47%)

Query:     5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             V+VRV  +DCEGC  K +RAL  ++G+ +V IE   QK+TV GY    K V + I R GK
Sbjct:    27 VDVRVL-IDCEGCERKVRRALEGMRGIRDVTIEPNAQKVTVVGYVEPNKVVARIIHRTGK 85

Query:    65 AAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTPXXXXXXXXXXXXX--X 122
              AE +PF  Y   A  + Y S +    YD    T       + P                
Sbjct:    86 RAELYPFVPYDVVA--HPYASGV----YDNRAPTGYVRNTEYDPHVSRLARASSTEVRYT 139

Query:   123 XLFSDDNPHACTIM 136
               FSD+N  AC +M
Sbjct:   140 TAFSDENASACVVM 153

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:4010713877 AT4G10465 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 49/138 (35%), Positives = 72/138 (52%)

Query:     5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             VE++V  + C GC    + A+ KL+GV+ VE++ E+ ++ V GY +D  KVLKA++RAGK
Sbjct:    53 VELKV-RMCCTGCVRIVRNAISKLRGVDSVEVDKELGRVRVVGY-VDRNKVLKAVRRAGK 110

Query:    65 AAE--PWPFPGYAHFASFYKY---PSYIVNHYYDTYG-ATNGAHTFFHTPXXXXXXXXXX 118
              AE  P+P P   +F S   Y   PS      Y+ Y    NG     + P          
Sbjct:   111 RAEFSPYPEPPL-YFTSTQNYFVDPSKEFKESYNYYRHGYNGTEQHGNIPVGSRGDDRVS 169

Query:   119 XXXXXLFSDDNPHACTIM 136
                  +F+DDN +AC +M
Sbjct:   170 N----MFNDDNVNACRLM 183

GO:0005576 "extracellular region" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
cd00371	63	cd00371, HMA, Heavy-metal-associated domain (HMA)	4e-14
pfam00403	62	pfam00403, HMA, Heavy-metal-associated domain	1e-11
COG2608	71	COG2608, CopZ, Copper chaperone [Inorganic ion tra	3e-09
PLN02957	238	PLN02957, PLN02957, copper, zinc superoxide dismut	6e-06
TIGR02052	92	TIGR02052, MerP, mercuric transport protein peripl	0.002
PRK11033	741	PRK11033, zntA, zinc/cadmium/mercury/lead-transpor	0.003

>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

 Score = 62.2 bits (152), Expect = 4e-14
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 6  EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAGK 64
          E+ V  + C GC SK ++AL KL GVE VE+++E  K TV     +  +++L+AI+ AG 
Sbjct: 1  ELSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGY 60

Query: 65 AAE 67
           A 
Sbjct: 61 KAR 63

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain

 Score = 55.7 bits (135), Expect = 1e-11
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)

Query: 6  EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAG 63
           +RVP + C GCA K ++AL KL GV  V +++E  K+TV G    L  +K+ KAI++AG
Sbjct: 1  TLRVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEKAG 60

Query: 64 K 64
           
Sbjct: 61 Y 61

Length = 62

>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 4  MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEME--VQKITVRGYALDEKKVLKAIKR 61
             ++V  + C  C    ++AL ++ GV  V++++E     +T     +D + +++AI+ 
Sbjct: 3  KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIED 62

Query: 62 AGKAAEPW 69
          AG   E  
Sbjct: 63 AGYKVEEI 70

Length = 71

>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 6/65 (9%)

Query: 2  QLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKR 61
          + MV+++     CEGC +  K  L  L+GV+ VE+++  Q + V G +   K +  A+++
Sbjct: 9  EFMVDMK-----CEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLG-SSPVKAMTAALEQ 62

Query: 62 AGKAA 66
           G+ A
Sbjct: 63 TGRKA 67

Length = 238

>gnl|CDD|131107 TIGR02052, MerP, mercuric transport protein periplasmic component

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
          V + VP + C  C    + AL K+ GV + E+  +  K+ V  +  DEK  +KA+  A  
Sbjct: 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFK-TKLAVVTFD-DEKTNVKALTEATT 82

Query: 65 AA 66
           A
Sbjct: 83 DA 84

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403) [Cellular processes, Detoxification]. Length = 92

>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional

 Score = 36.1 bits (84), Expect = 0.003
 Identities = 17/56 (30%), Positives = 31/56 (55%)

Query: 8   RVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
           +V  +DC  CA K + A+ +L GV +V++    +K+ V        +V  A+++AG
Sbjct: 58  KVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAG 113

Length = 741

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.45
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.35
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	99.29
KOG4656	247	consensus Copper chaperone for superoxide dismutas	98.77
PRK10671	834	copA copper exporting ATPase; Provisional	98.41
PLN02957	238	copper, zinc superoxide dismutase	98.2
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.04
TIGR00003	68	copper ion binding protein. This model describes a	97.89
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.48
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.12
PRK10671	834	copA copper exporting ATPase; Provisional	97.11
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	96.66
TIGR02052	92	MerP mercuric transport protein periplasmic compon	93.29
PRK13748	561	putative mercuric reductase; Provisional	89.36
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	86.85
COG1888	97	Uncharacterized protein conserved in archaea [Func	86.39
PF02680	95	DUF211: Uncharacterized ArCR, COG1888; InterPro: I	85.14
cd00371	63	HMA Heavy-metal-associated domain (HMA) is a conse	82.2
PRK11018	78	hypothetical protein; Provisional	80.99

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.45  E-value=1.5e-12  Score=75.95  Aligned_cols=60  Identities=38%  Similarity=0.707  Sum_probs=55.1

Q ss_pred             EEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcc
Q 047678            6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKA   65 (136)
Q Consensus         6 ~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~   65 (136)
                      +|+|.+|.|++|+++|+++|.+++||.++.+|+..++++|.++.  .+.+++.+.|+++||+
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~   62 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE   62 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence            47899999999999999999999999999999999999999863  5679999999999984

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.35  E-value=1.5e-11  Score=73.83  Aligned_cols=67  Identities=25%  Similarity=0.467  Sum_probs=59.4

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ++..|++++|.|.+|+..|+++|.+++||..+.+++..+.+.|+.+.  ++.+.+.+++..+||.+..+
T Consensus         2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~   70 (71)
T COG2608           2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI   70 (71)
T ss_pred             ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence            45779999999999999999999999999999999999777776543  78999999999999987654

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.29  E-value=3.3e-11  Score=72.67  Aligned_cols=67  Identities=52%  Similarity=0.873  Sum_probs=61.1

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhC-cccccCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG-KAAEPWPF   71 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g-~~~~~~~~   71 (136)
                      +..++++ .|+|++|..+|++.|..++||.++.+|...++++|.|. +++..+++.|++.+ ++.++|..
T Consensus         5 ~~~v~kv-~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~-~~p~~vl~~l~k~~~k~~~~~~~   72 (73)
T KOG1603|consen    5 KTVVLKV-NMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN-VDPVKLLKKLKKTGGKRAELWKV   72 (73)
T ss_pred             cEEEEEE-CcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe-cCHHHHHHHHHhcCCCceEEecC
Confidence            4567888 89999999999999999999999999999999999998 99999999999887 77777753

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=98.77  E-value=4e-08  Score=69.30  Aligned_cols=67  Identities=22%  Similarity=0.426  Sum_probs=61.5

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPF   71 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~~   71 (136)
                      -+.+|.| .|.|++|+..|++.|..++||.++++|+..+.+.|.+. ..+.++...|+.+|.++.+...
T Consensus         7 ~~~efaV-~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts-~p~s~i~~~le~tGr~Avl~G~   73 (247)
T KOG4656|consen    7 YEAEFAV-QMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETS-VPPSEIQNTLENTGRDAVLRGA   73 (247)
T ss_pred             eeEEEEE-echhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEcc-CChHHHHHHHHhhChheEEecC
Confidence            3578999 89999999999999999999999999999999999987 8899999999999999887654

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.41  E-value=1.3e-06  Score=74.10  Aligned_cols=66  Identities=23%  Similarity=0.443  Sum_probs=58.2

Q ss_pred             CceEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccC
Q 047678            1 MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         1 ~~~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      |++++.++|++|+|.+|..+|+++|++++||..+.+++.  +.++++. .+.+.+.+.++..|++++..
T Consensus         1 ~~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~-~~~~~i~~~i~~~Gy~~~~~   66 (834)
T PRK10671          1 MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT-ASAEALIETIKQAGYDASVS   66 (834)
T ss_pred             CCeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec-CCHHHHHHHHHhcCCccccc
Confidence            678899999999999999999999999999999999984  4455554 68889999999999998875

>PLN02957 copper, zinc superoxide dismutase

Probab=98.20  E-value=2e-05  Score=57.69  Aligned_cols=68  Identities=31%  Similarity=0.506  Sum_probs=60.1

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFP   72 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~~~   72 (136)
                      .++.+.+ +|.|..|+.++++.|.++.||..+.+++..+++.+... .....+.+.+++.|+.++++...
T Consensus         6 ~~~~~~V-gMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~-~~~~~I~~aIe~~Gy~a~~~~~~   73 (238)
T PLN02957          6 LLTEFMV-DMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS-SPVKAMTAALEQTGRKARLIGQG   73 (238)
T ss_pred             EEEEEEE-CccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec-CCHHHHHHHHHHcCCcEEEecCC
Confidence            4567889 79999999999999999999999999999999998875 67888889999999998877654

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.04  E-value=2.5e-05  Score=65.12  Aligned_cols=65  Identities=31%  Similarity=0.506  Sum_probs=57.4

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CC-HHHHHHHHHHhCccccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LD-EKKVLKAIKRAGKAAEP   68 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~-~~~v~~~l~~~g~~~~~   68 (136)
                      .+..|.++||+|..|.++++ +|++++||..+.+++.++++.+..+.  .+ .+.+.+.++..|+.+..
T Consensus         2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~   69 (713)
T COG2217           2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL   69 (713)
T ss_pred             ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence            45779999999999999999 99999999999999999999988652  34 68899999999997765

>TIGR00003 copper ion binding protein

Probab=97.89  E-value=0.00031  Score=38.73  Aligned_cols=63  Identities=27%  Similarity=0.401  Sum_probs=49.8

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKA   65 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~   65 (136)
                      ++..+.+.++.|..|...+++.+....++....+++....+.++...  .+...+...+...|+.
T Consensus         2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (68)
T TIGR00003         2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYE   66 (68)
T ss_pred             cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence            45679999999999999999999999999999999999888877531  3555665556666654

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.48  E-value=0.00044  Score=58.45  Aligned_cols=68  Identities=24%  Similarity=0.405  Sum_probs=61.0

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      .++.|.+.||.|..|..++++.|.++.||.+.+++..++++.|..++  ..+..+.+.+...|+.+...+
T Consensus       146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~  215 (951)
T KOG0207|consen  146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRP  215 (951)
T ss_pred             CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeee
Confidence            36789999999999999999999999999999999999999987653  789999999999998876655

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.12  E-value=0.0033  Score=53.04  Aligned_cols=67  Identities=25%  Similarity=0.383  Sum_probs=53.7

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ++..+++.+|+|..|..++++.+.++.||..+.+++..+++.+..+....+.+.+.+...|+.+..+
T Consensus        53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~  119 (741)
T PRK11033         53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE  119 (741)
T ss_pred             ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence            3567889999999999999999999999999999999988877643222256667777888876544

>PRK10671 copA copper exporting ATPase; Provisional

Probab=97.11  E-value=0.0032  Score=53.72  Aligned_cols=66  Identities=21%  Similarity=0.452  Sum_probs=55.5

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCC
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      ++.+.+.+|+|..|...+++.+.+++|+..+.+++..++..+... .+...+.+.+.+.|+.+.++.
T Consensus       100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~-~s~~~I~~~I~~~Gy~a~~~~  165 (834)
T PRK10671        100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGS-ASPQDLVQAVEKAGYGAEAIE  165 (834)
T ss_pred             eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEcc-CCHHHHHHHHHhcCCCccccc
Confidence            356889999999999999999999999999999999988777644 567777788888888766543

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=96.66  E-value=0.007  Score=51.50  Aligned_cols=69  Identities=22%  Similarity=0.319  Sum_probs=60.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCCCCC
Q 047678            5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWPFPG   73 (136)
Q Consensus         5 v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~~~~   73 (136)
                      -.+++.||.|..|.+.+++.|++.+|+.++.+.+...+..+..++  ..++.+.+.+.+.|+.+++.....
T Consensus        71 ~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~~~  141 (951)
T KOG0207|consen   71 CYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIESVN  141 (951)
T ss_pred             eEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhccc
Confidence            357899999999999999999999999999999999999887653  678888999999999988776543

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=93.29  E-value=0.98  Score=26.62  Aligned_cols=65  Identities=25%  Similarity=0.387  Sum_probs=45.5

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec--CCCHHHHHHHHHHhCccccc
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY--ALDEKKVLKAIKRAGKAAEP   68 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~--~~~~~~v~~~l~~~g~~~~~   68 (136)
                      .+.+.+.++.|..|...++..+....++.............+...  ......+...+...|+..++
T Consensus        24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   90 (92)
T TIGR02052        24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL   90 (92)
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence            456778899999999999999998888888887777776555421  13445554555566665443

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>PRK13748 putative mercuric reductase; Provisional

Probab=89.36  E-value=3.9  Score=33.38  Aligned_cols=67  Identities=18%  Similarity=0.292  Sum_probs=49.6

Q ss_pred             EEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec-CCCHHHHHHHHHHhCcccccCCC
Q 047678            5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY-ALDEKKVLKAIKRAGKAAEPWPF   71 (136)
Q Consensus         5 v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~-~~~~~~v~~~l~~~g~~~~~~~~   71 (136)
                      +.+.+.++.|..|..+++..+....++....+++......+... ......+...+...++..+++..
T Consensus         2 ~~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~   69 (561)
T PRK13748          2 TTLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA   69 (561)
T ss_pred             EEEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence            34678899999999999999999999888888888877666532 13455555666677776655554

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=86.85  E-value=4.1  Score=23.53  Aligned_cols=55  Identities=16%  Similarity=0.104  Sum_probs=38.6

Q ss_pred             EEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec-CCCHHHHHHHHHHhCcccccC
Q 047678            6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY-ALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         6 ~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~-~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ++.+.|..|+....+++++|.+++.         .+.+.|..+ ......+.+.+++.|++...+
T Consensus         2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~   57 (70)
T PF01206_consen    2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDPAAVEDIPRWCEENGYEVVEV   57 (70)
T ss_dssp             EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence            4667799999999999999998732         234444443 245677888899999875444

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

>COG1888 Uncharacterized protein conserved in archaea [Function unknown]

Probab=86.39  E-value=3.4  Score=25.77  Aligned_cols=52  Identities=33%  Similarity=0.407  Sum_probs=37.1

Q ss_pred             HHHHHHHhCCCCeeEEEEecc-----C--cEEEEEecCCCHHHHHHHHHHhCcccccCC
Q 047678           19 SKCKRALFKLKGVEEVEIEME-----V--QKITVRGYALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus        19 ~~v~~~l~~~~gv~~v~vd~~-----~--~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      ..+-+.|+++.||..+++...     +  -++++.|..++.+++.+.|.+.|.....+.
T Consensus        22 ve~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSiD   80 (97)
T COG1888          22 VELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSID   80 (97)
T ss_pred             HHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeehh
Confidence            345667788888887766443     2  345666766899999999999997665544

>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function

Probab=85.14  E-value=4.2  Score=25.56  Aligned_cols=51  Identities=29%  Similarity=0.441  Sum_probs=35.9

Q ss_pred             HHHHHHHhCCCCeeEEEEecc-----Cc--EEEEEecCCCHHHHHHHHHHhCcccccC
Q 047678           19 SKCKRALFKLKGVEEVEIEME-----VQ--KITVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus        19 ~~v~~~l~~~~gv~~v~vd~~-----~~--~v~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      -.+-+.|.+++||..+++...     +.  ++++.|..++.+++.+.|.+.|.....+
T Consensus        20 ~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI   77 (95)
T PF02680_consen   20 VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI   77 (95)
T ss_dssp             HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred             HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence            356678899999988876543     33  4455676689999999999999765544

; PDB: 3BPD_I 2RAQ_F 2X3D_E.

>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

Probab=82.20  E-value=4.2  Score=19.56  Aligned_cols=39  Identities=49%  Similarity=0.800  Sum_probs=29.4

Q ss_pred             EecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEE
Q 047678            8 RVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVR   46 (136)
Q Consensus         8 ~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~   46 (136)
                      .+.++.|..|...++..+....++......+......+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   41 (63)
T cd00371           3 SVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE   41 (63)
T ss_pred             eECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence            356788999999999888888887777666666655544

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.

>PRK11018 hypothetical protein; Provisional

Probab=80.99  E-value=9.5  Score=22.80  Aligned_cols=55  Identities=15%  Similarity=0.051  Sum_probs=39.2

Q ss_pred             EEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec-CCCHHHHHHHHHHhCccccc
Q 047678            5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY-ALDEKKVLKAIKRAGKAAEP   68 (136)
Q Consensus         5 v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~-~~~~~~v~~~l~~~g~~~~~   68 (136)
                      ..+.+.|..|+...-+.+++|.++..         .+.+.|..+ ......+...+++.|+.+..
T Consensus         9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~a~~di~~~~~~~G~~v~~   64 (78)
T PRK11018          9 YRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLD   64 (78)
T ss_pred             eeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEE
Confidence            56778899999999999999998742         233344332 24556777788888987643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	7e-17
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	5e-15
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	9e-13
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	3e-12
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	3e-12
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	7e-09
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	4e-08
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	3e-07
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	5e-07
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	2e-05
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	3e-05
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	4e-05
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	4e-05
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	2e-04
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	5e-05
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	1e-04
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	2e-04
2kyz_A	67	Heavy metal binding protein; structural genomics,	2e-04
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	2e-04
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	5e-04
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	6e-04

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 69.9 bits (171), Expect = 7e-17
 Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
          +E  V  + C+ C    +++L  + GV++VE+ +E Q + V       ++V   ++  G+
Sbjct: 21 LEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTL-PSQEVQALLEGTGR 78

Query: 65 AAEPWPFPG 73
           A       
Sbjct: 79 QAVLKGMGS 87

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 67.8 bits (165), Expect = 5e-15
 Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 2/104 (1%)

Query: 5   VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
               +P + CE C +  K  L  + G+  +  ++E Q ++V    +    ++  ++  GK
Sbjct: 8   ATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGK 65

Query: 65  AAEPWPFPGYAHFASFYKYPSYIVNHYYDTYGATNGAHTFFHTP 108
            A           A                  A  G        
Sbjct: 66  DAIIRGAGKPNSSAVAILETFQKYTIDQKKDTAVRGLARIVQVG 109

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68

 Score = 58.2 bits (141), Expect = 9e-13
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 11 NLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPW 69
          ++ C GCA    R L KL GV + +I++  +K+ +         +L  +K+ GK     
Sbjct: 9  DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE-HSMDTLLATLKKTGKTVSYL 65

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
              +P + CE C +  K  L  + G+  +  ++E Q ++V    +    ++  ++  GK
Sbjct: 9  ATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGK 66

Query: 65 AAEPWPFPGYAHF 77
           A           
Sbjct: 67 DAIIRGAGKPNSS 79

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73

 Score = 57.1 bits (138), Expect = 3e-12
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLK-GVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
           +  V  + C GC+    + L KL+  V +++I +E Q + V    L    +L+ IK+ G
Sbjct: 7  YQFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKIKKTG 64

Query: 64 KAA 66
          K  
Sbjct: 65 KEV 67

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Length = 64

 Score = 48.1 bits (115), Expect = 7e-09
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
          +++ VP + CE CA    +A+        V++++  +K+T+   AL E+++  AI  AG 
Sbjct: 3  IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIASAGY 61

Query: 65 AAE 67
            E
Sbjct: 62 EVE 64

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Length = 85

 Score = 46.7 bits (111), Expect = 4e-08
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 4  MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
           +   V ++ C  CA   K A+ K      V  +   + + V G   D   + + I  AG
Sbjct: 23 GLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGG-VSDAAHIAEIITAAG 81

Query: 64 KAAE 67
             E
Sbjct: 82 YTPE 85

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Length = 66

 Score = 43.8 bits (104), Expect = 3e-07
 Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 4  MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAG 63
          M++++V  + C  C     +AL K+ GVE+VE+ +E  +  V G A D K +++A++  G
Sbjct: 1  MLKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTA-DPKALVQAVEEEG 59

Query: 64 KAAEP 68
            AE 
Sbjct: 60 YKAEV 64

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Length = 71

 Score = 43.6 bits (103), Expect = 5e-07
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 1  MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIK 60
          M      RV  L C  CA+K +R + +++GV E  +     KITV G A   ++V +A  
Sbjct: 1  MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEA-SIQQVEQAGA 59

Query: 61 RAGKAAEP 68
                 P
Sbjct: 60 FEHLKIIP 67

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Length = 69

 Score = 38.8 bits (91), Expect = 2e-05
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 4  MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRA 62
          M  +++  + C+ CA+  K AL K+ GV+   +        +          +  A+   
Sbjct: 1  MTHLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGL 60

Query: 63 GKAAEP 68
          G  A  
Sbjct: 61 GYKATL 66

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Length = 73

 Score = 38.6 bits (90), Expect = 3e-05
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             +V  +DC  CA K + A+ +L GV +V++    +K+ V        +V  A+++AG 
Sbjct: 5  YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGY 64

Query: 65 AAEP 68
          +   
Sbjct: 65 SLRD 68

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Length = 66

 Score = 38.4 bits (90), Expect = 4e-05
 Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAG 63
             +VP++ C  C  K ++ + +++GV  +++ +E + + V   A   +  + +A+  AG
Sbjct: 3  ATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAG 62

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVR--GYALDEKKVLKAIKRA 62
          + ++V  + C  CA++ ++ L ++ GV +  + +  + + V           + + I++ 
Sbjct: 8  IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67

Query: 63 GKAAEPW 69
          G      
Sbjct: 68 GYHVVTE 74

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 5   VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVR--GYALDEKKVLKAIKRA 62
            E  +  + C  CA++ ++ L K++GV    +   ++ +TV           + +A+ + 
Sbjct: 76  AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 135

Query: 63  GKAAEP 68
           G   + 
Sbjct: 136 GYKLKL 141

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Length = 73

 Score = 38.1 bits (89), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
          + + +  L C  C ++ K+AL +  G +  ++++   +  V G   D  K +KA++ AG 
Sbjct: 7  IVLELSGLSCHHCVARVKKALEEA-GAKVEKVDLN--EAVVAGNKEDVDKYIKAVEAAGY 63

Query: 65 AAEP 68
           A+ 
Sbjct: 64 QAKL 67

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Length = 72

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVR--GYALDEKKVLKAIKRA 62
          V + VP + C  C    K+A+ K++GV +V++  E ++  V         +K+ KA   A
Sbjct: 5  VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64

Query: 63 G 63
          G
Sbjct: 65 G 65

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Length = 71

 Score = 36.5 bits (85), Expect = 2e-04
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY---ALDEKKVLKAIKR 61
           +++V  + C  CAS  +RAL +LKGV E  + +   ++TV  Y    + E  + + I  
Sbjct: 5  QQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVT-YDPKQVSEITIQERIAA 63

Query: 62 AG-KAAEP 68
           G   AEP
Sbjct: 64 LGYTLAEP 71

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima} Length = 67

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
            + VP++ C  C  +  +AL +L GV+  E+ +E +K+ V     +   VLK ++    
Sbjct: 3  YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVET--ENLDSVLKKLEEIDY 59

Query: 65 AAE 67
            E
Sbjct: 60 PVE 62

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Length = 71

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 1  MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAI 59
          M   + +++  + C  CAS  +RA+ K+ GV+  ++   +++  V  +     + +  A+
Sbjct: 1  MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAV 60

Query: 60 KRAGKAAEP 68
          +RAG  A  
Sbjct: 61 ERAGYHARV 69

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 9/71 (12%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-----LDEKKVLKAI 59
          +++R+  + C+ C    +  + +L GV+ +++ +E +   V+        +  ++ ++A+
Sbjct: 22 LQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL 81

Query: 60 KRAGKAAEPWP 70
                     
Sbjct: 82 PPGNFKVSLPD 92

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRA 62
            +++  + C  C S  +R L K  GV  V + +   K  ++     +   ++ + I+  
Sbjct: 6  CFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDL 65

Query: 63 G 63
          G
Sbjct: 66 G 66

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.5
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.46
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.44
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.41
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.39
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.35
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.26
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.25
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.25
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.25
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.24
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.24
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.23
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.22
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.21
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.2
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.2
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.19
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.18
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.18
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.18
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.18
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.17
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.17
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.16
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	99.14
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	99.13
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.12
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.1
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	99.1
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.08
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	99.08
2kkh_A	95	Putative heavy metal transporter; zinc transport,	99.06
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	99.04
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	98.99
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.96
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	98.86
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	98.84
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.6
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.58
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.49
1jdq_A	98	TM006 protein, hypothetical protein TM0983; struct	88.36
2x3d_A	96	SSO6206; unknown function; 2.70A {Sulfolobus solfa	85.86
3bpd_A	100	Uncharacterized protein; heptamer, Mg+2 ION, PSI-2	85.37
2raq_A	97	Conserved protein MTH889; alpha-beta protein, stru	83.98
3lvj_C	82	Sulfurtransferase TUSA; protein-protein complex, s	83.53
1je3_A	97	EC005, hypothetical 8.6 kDa protein in AMYA-FLIE i	83.21
3hz7_A	87	Uncharacterized protein; alpha-beta protein, struc	80.54

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.50  E-value=9.4e-14  Score=81.35  Aligned_cols=66  Identities=27%  Similarity=0.491  Sum_probs=61.5

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPF   71 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~~   71 (136)
                      ++..|+| ||+|.+|+.+|+++|++++|| ++.+|+..++++|.+. .+.+.+.+.|++.||.+++|..
T Consensus         2 ~~~~~~v-gm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~~~~~~~   67 (68)
T 3iwl_A            2 PKHEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE-HSMDTLLATLKKTGKTVSYLGL   67 (68)
T ss_dssp             CEEEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEES-SCHHHHHHHHHTTCSCEEEEEC
T ss_pred             ceEEEEE-CcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEec-CCHHHHHHHHHHcCCceEecCC
Confidence            5678999 999999999999999999999 9999999999999986 8999999999999999988753

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.46  E-value=5.7e-13  Score=78.84  Aligned_cols=68  Identities=22%  Similarity=0.378  Sum_probs=62.2

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      +++.|+|+||+|.+|+.+|+++|++++||..+.+++..++++|..+.  ++.+.+.+.|++.||.++++.
T Consensus         2 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   71 (74)
T 3dxs_X            2 RKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA   71 (74)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence            66889999999999999999999999999999999999999998643  688999999999999987764

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.44  E-value=1.4e-12  Score=76.08  Aligned_cols=67  Identities=24%  Similarity=0.455  Sum_probs=60.9

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec-CCCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY-ALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~-~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      +++.|+|+||+|.+|+.+|+++|.+++||..+.+++..++++|... ..+.+.+.+.|++.||.++++
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~   69 (69)
T 4a4j_A            2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARVL   69 (69)
T ss_dssp             EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEEC
T ss_pred             CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEeC
Confidence            5788999999999999999999999999999999999999999852 278999999999999987653

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.41  E-value=2.4e-12  Score=76.02  Aligned_cols=67  Identities=27%  Similarity=0.444  Sum_probs=61.6

Q ss_pred             ceEEEEEecCCCChhHHHHHHHHHhCCC-CeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCC
Q 047678            2 QLMVEVRVPNLDCEGCASKCKRALFKLK-GVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         2 ~~~v~~~v~~m~C~~C~~~v~~~l~~~~-gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      +++..|+|. |+|.+|+.+|+++|.+++ ||.++.+|+..++++|.+. .+.+.+.+.|++.|+.+++|.
T Consensus         4 m~~~~~~v~-m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~~~~~~   71 (73)
T 1cc8_A            4 IKHYQFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKIKKTGKEVRSGK   71 (73)
T ss_dssp             CEEEEEEEC-CCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTSSCEEEEE
T ss_pred             ceEEEEEEe-eECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHhCCCceeee
Confidence            367889998 999999999999999999 9999999999999999985 789999999999999987764

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.39  E-value=1.8e-12  Score=76.71  Aligned_cols=67  Identities=21%  Similarity=0.346  Sum_probs=61.6

Q ss_pred             ceEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCCC
Q 047678            2 QLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPF   71 (136)
Q Consensus         2 ~~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~~   71 (136)
                      ++++.|+|.||+|.+|+.+|+++|++ +||..+.+++..++++|..+  +.+.+.+.|++.||.+++++.
T Consensus         4 m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~--~~~~i~~~i~~~Gy~~~~~~~   70 (73)
T 3fry_A            4 VEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE--DVDKYIKAVEAAGYQAKLRSS   70 (73)
T ss_dssp             CEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG--GHHHHHHHHHHTTCEEEECCS
T ss_pred             cEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC--CHHHHHHHHHHcCCceEecCc
Confidence            36788999999999999999999999 99999999999999999876  888999999999999888763

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.35  E-value=9e-12  Score=72.17  Aligned_cols=68  Identities=24%  Similarity=0.451  Sum_probs=59.1

Q ss_pred             CceEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC-CCHHHHHHHHHHhCccccc
Q 047678            1 MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAGKAAEP   68 (136)
Q Consensus         1 ~~~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~-~~~~~v~~~l~~~g~~~~~   68 (136)
                      |+++..|++.||+|.+|+.+++++|.+++||..+.+++..+++.+..+. .+.+.+.+.|...|+.+.+
T Consensus         1 m~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~   69 (71)
T 2xmw_A            1 MAQTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV   69 (71)
T ss_dssp             -CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred             CCcEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence            6788899999999999999999999999999999999999999988642 5678888999999987654

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.26  E-value=2.4e-11  Score=68.91  Aligned_cols=63  Identities=27%  Similarity=0.537  Sum_probs=57.0

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccc
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAE   67 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~   67 (136)
                      +..|++.||+|.+|..+++++|.+++||..+.+++..+++.+.+. .+.+.+.+.|.+.|+.++
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~G~~~~   64 (64)
T 2xmm_A            2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSA-LGEEQLRTAIASAGYEVE   64 (64)
T ss_dssp             CEEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECS-SCHHHHHHHHHHTTCCCC
T ss_pred             eEEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEec-CCHHHHHHHHHHcCCCCC
Confidence            356999999999999999999999999999999999999999865 788889999999998753

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=3.8e-11  Score=75.25  Aligned_cols=68  Identities=24%  Similarity=0.428  Sum_probs=62.1

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFP   72 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~~~   72 (136)
                      .++.|+|. |+|.+|+.+|+++|.+++||..+.+++..++++|.+. .+.+.+.+.|+++||.+.+|...
T Consensus        19 ~~~~l~V~-m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~-~~~~~i~~~i~~~Gy~~~~~~~~   86 (98)
T 2crl_A           19 CTLEFAVQ-MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTT-LPSQEVQALLEGTGRQAVLKGMG   86 (98)
T ss_dssp             EEEEEEEC-CCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEES-SCHHHHHHHHHTTTSCEEEEESC
T ss_pred             eEEEEEEe-eECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHhCCceEEccCC
Confidence            45789998 9999999999999999999999999999999999986 78899999999999998887644

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.25  E-value=9.7e-11  Score=68.55  Aligned_cols=67  Identities=25%  Similarity=0.390  Sum_probs=58.4

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      +++.|+|.||+|.+|..+|+++|.+++||..+.+++..+++.|..+....+.+.+.|...||.+...
T Consensus         3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~~   69 (73)
T 1mwy_A            3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDE   69 (73)
T ss_dssp             EEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEEC
T ss_pred             eEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccccc
Confidence            5678999999999999999999999999999999999999999875333677888899999976543

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.25  E-value=1e-10  Score=67.90  Aligned_cols=67  Identities=27%  Similarity=0.431  Sum_probs=59.2

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      +++.|++.||+|.+|..+|+++|.+++||..+.+++..+++.+..+.  .+.+.+.+.|...|+.+.+.
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   71 (72)
T 1osd_A            3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK   71 (72)
T ss_dssp             EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred             eEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEec
Confidence            45789999999999999999999999999999999999999987642  57788999999999987553

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.24  E-value=6.6e-11  Score=68.70  Aligned_cols=67  Identities=16%  Similarity=0.240  Sum_probs=59.2

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ++..|+|.||+|.+|+.+++++|.+++||..+.+++..+++.+..+.  ...+.+.+.|.+.|+.+.+.
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   71 (72)
T 1aw0_A            3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS   71 (72)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEeC
Confidence            56789999999999999999999999999999999999999998653  56788999999999976543

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.24  E-value=1.1e-10  Score=67.60  Aligned_cols=64  Identities=19%  Similarity=0.395  Sum_probs=57.1

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAA   66 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~   66 (136)
                      .+..|+|.||.|.+|..+|+++|.+++||..+.+++..+++.+..+.  .+.+.+.+.|.+.|+.+
T Consensus         5 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   70 (71)
T 2l3m_A            5 EQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV   70 (71)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred             EEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence            46789999999999999999999999999999999999999987542  67888999999999865

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.23  E-value=1.5e-10  Score=67.98  Aligned_cols=67  Identities=21%  Similarity=0.318  Sum_probs=59.4

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      .++.|++.||+|.+|+.+|+++|.+++||..+.+++..+++.+..+.  .+.+.+.+.|...|+.+.+.
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~   70 (75)
T 3cjk_B            2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIH   70 (75)
T ss_dssp             EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEee
Confidence            45789999999999999999999999999999999999999998642  57788999999999987654

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.22  E-value=9.5e-11  Score=70.78  Aligned_cols=70  Identities=21%  Similarity=0.402  Sum_probs=61.9

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWPFP   72 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~~~   72 (136)
                      .++.|+|.||+|.+|+.+|+++|.+++||..+.+++..+++.|..+.  ++.+.+.+.|...|+.+.++..+
T Consensus         9 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~   80 (84)
T 1q8l_A            9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQP   80 (84)
T ss_dssp             EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCCT
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCCc
Confidence            45789999999999999999999999999999999999999998642  57888999999999988776644

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.21  E-value=2.3e-10  Score=65.26  Aligned_cols=64  Identities=23%  Similarity=0.403  Sum_probs=56.8

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAA   66 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~   66 (136)
                      ....|++.||+|.+|..+++++|..++||..+.+++..+++.+..+.  .+.+.+.+.+...|+.+
T Consensus         2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   67 (69)
T 2qif_A            2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence            45679999999999999999999999999999999999999987642  57788889999999864

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.20  E-value=1.3e-10  Score=71.42  Aligned_cols=70  Identities=17%  Similarity=0.178  Sum_probs=61.1

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHh---CcccccCCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRA---GKAAEPWPFP   72 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~---g~~~~~~~~~   72 (136)
                      +++.|+|.||.|.+|+.+|+++|.+++||..+.+++..++++|..+.  ++.+.+.+.|..+   ||++.++...
T Consensus         3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~~   77 (90)
T 2g9o_A            3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSEV   77 (90)
T ss_dssp             EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCCC
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCCC
Confidence            45679999999999999999999999999999999999999998642  5678899999999   5888777654

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.20  E-value=3.2e-11  Score=69.40  Aligned_cols=63  Identities=32%  Similarity=0.556  Sum_probs=56.4

Q ss_pred             EEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccC
Q 047678            6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         6 ~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      .|++.||+|.+|+.+++++|.+++||..+.+++..+++++.+. .+.+.+.+.|.+.||.+..+
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~~~~~   65 (66)
T 2roe_A            3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGT-ADPKALVQAVEEEGYKAEVL   65 (66)
T ss_dssp             CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSC-CCHHHHHHHHHTTTCEEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCC-CCHHHHHHHHHHcCCCcEec
Confidence            5889999999999999999999999999999999999999543 78899999999999977543

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.19  E-value=7.5e-11  Score=72.00  Aligned_cols=63  Identities=22%  Similarity=0.302  Sum_probs=58.0

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAA   66 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~   66 (136)
                      .+..|+|.||.|.+|+.+|+++|.+++||..+.+++..++++|... ++.+.+.+.|..+||.+
T Consensus        22 ~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~-~~~~~i~~~i~~~Gy~~   84 (85)
T 2k2p_A           22 AGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGV-SDAAHIAEIITAAGYTP   84 (85)
T ss_dssp             CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESC-CCHHHHHHHHHHTTCCC
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEec-CCHHHHHHHHHHcCCCC
Confidence            4567999999999999999999999999999999999999999876 78899999999999865

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.18  E-value=1.4e-10  Score=67.28  Aligned_cols=68  Identities=21%  Similarity=0.312  Sum_probs=59.8

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC-CCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~-~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      ++..|++.||+|.+|..+++++|.+++||..+.+++..+++.+..+. .+.+.+.+.+.+.|+.++++.
T Consensus         2 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~   70 (72)
T 1fvq_A            2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR   70 (72)
T ss_dssp             EEEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence            35679999999999999999999999999999999999999987542 577889999999999887664

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.18  E-value=2.3e-10  Score=65.17  Aligned_cols=63  Identities=21%  Similarity=0.423  Sum_probs=55.8

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC-CCHHHHHHHHHHhCccc
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAGKAA   66 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~-~~~~~v~~~l~~~g~~~   66 (136)
                      +..|++.||.|.+|..+++++|.+++||..+.+++..+++.+..+. .+.+.+.+.+.+.|+.+
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~   65 (66)
T 1yg0_A            2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV   65 (66)
T ss_dssp             EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred             eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence            4568999999999999999999999999999999999999998643 46788888999999864

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.18  E-value=1.2e-10  Score=67.21  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=56.9

Q ss_pred             EEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC-CCHHHHHHHHHHhCcccccC
Q 047678            6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         6 ~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~-~~~~~v~~~l~~~g~~~~~~   69 (136)
                      .|++.||+|.+|+.+|+++|.+++||..+.+++..+++.+..+. ...+.+.+.+.++|+.+.+.
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~   67 (69)
T 2kt2_A            3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLA   67 (69)
T ss_dssp             CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEECC
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEeC
Confidence            48889999999999999999999999999999999999987643 57788999999999987654

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.18  E-value=2e-10  Score=65.82  Aligned_cols=63  Identities=24%  Similarity=0.476  Sum_probs=56.4

Q ss_pred             EEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCccccc
Q 047678            6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEP   68 (136)
Q Consensus         6 ~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~   68 (136)
                      .|++.||+|.+|..+++++|.+++||..+.+++..+++.+..+.  .+.+.+.+.+.+.|+.+++
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~   67 (68)
T 1cpz_A            3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV   67 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred             EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence            58899999999999999999999999999999999999998642  5778899999999997654

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.17  E-value=3.4e-10  Score=66.11  Aligned_cols=67  Identities=15%  Similarity=0.349  Sum_probs=59.1

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      .+..|+|.||+|.+|..+++++|.+++||..+.+++..+++.+..+.  .+.+.+.+.+...|+.+.++
T Consensus         6 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   74 (76)
T 1opz_A            6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE   74 (76)
T ss_dssp             EEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence            45679999999999999999999999999999999999999987542  57888899999999987654

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.17  E-value=7.5e-11  Score=69.73  Aligned_cols=68  Identities=18%  Similarity=0.308  Sum_probs=60.1

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      +++.|+|.||+|.+|+.+|+++|.+++||..+.+++..+++.+..+.  .+.+.+.+.|...|+.+.++.
T Consensus         3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   72 (77)
T 1y3j_A            3 SKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIE   72 (77)
T ss_dssp             EEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEES
T ss_pred             EEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECC
Confidence            56789999999999999999999999999999999999999988642  567888999999999876653

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.16  E-value=2.1e-10  Score=68.00  Aligned_cols=68  Identities=21%  Similarity=0.309  Sum_probs=59.8

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      .++.|++.||+|.+|+.+|+++|.+++||..+.+++..+++.+..+.  .+.+.+.+.|...|+.+.+..
T Consensus         8 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   77 (79)
T 1kvi_A            8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN   77 (79)
T ss_dssp             EEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECC
T ss_pred             EEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecC
Confidence            45789999999999999999999999999999999999999998642  567889999999999876543

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=99.14  E-value=2.7e-10  Score=67.42  Aligned_cols=69  Identities=17%  Similarity=0.330  Sum_probs=60.5

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWPF   71 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~~   71 (136)
                      .+..|+|.||+|.+|..+++++|.+++||..+.+++..+++.+..+.  .+.+.+.+.+...|+.+.++..
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~~   73 (80)
T 1jww_A            3 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE   73 (80)
T ss_dssp             EEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECCS
T ss_pred             eEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecCc
Confidence            56789999999999999999999999999999999999999987542  5778889999999998777653

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=99.13  E-value=2.6e-10  Score=66.42  Aligned_cols=64  Identities=30%  Similarity=0.473  Sum_probs=54.6

Q ss_pred             CceEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccC
Q 047678            1 MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         1 ~~~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      |+++..|.|.||+|.+|..+|+++|.+++||..+.+++..+++.|.+. ..    .+.|..+|+.+.+.
T Consensus         1 m~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~-~~----~~~i~~~Gy~~~~~   64 (71)
T 2aj0_A            1 MAEKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGE-AS----IQQVEQAGAFEHLK   64 (71)
T ss_dssp             CCCEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEES-CC----HHHHHHHHTTTTCE
T ss_pred             CCeEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEec-Cc----HHHHHHhCCCcccc
Confidence            667788999999999999999999999999999999999999999876 33    34667888765443

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.12  E-value=1.7e-10  Score=66.49  Aligned_cols=62  Identities=27%  Similarity=0.480  Sum_probs=55.3

Q ss_pred             EEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccC
Q 047678            5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         5 v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ..|++.||+|.+|+.+++++|.++ ||..+.+++..+++++..+ .. +.+.+.+.+.|+.+...
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~-~~-~~i~~~i~~~Gy~~~~~   64 (67)
T 2kyz_A            3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETE-NL-DSVLKKLEEIDYPVESY   64 (67)
T ss_dssp             EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECS-CH-HHHHHHHHTTTCCCCBC
T ss_pred             EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEEC-CH-HHHHHHHHHcCCceeeE
Confidence            569999999999999999999999 9999999999999999876 34 78888999999976554

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.10  E-value=4.6e-10  Score=65.54  Aligned_cols=66  Identities=17%  Similarity=0.364  Sum_probs=57.5

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCccccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEP   68 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~   68 (136)
                      .++.|++.||+|.+|+.+++++|.+++||..+.+++..+++.+..+.  ...+.+.+.+...|+.+.+
T Consensus         4 ~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~   71 (75)
T 1yjr_A            4 GVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSL   71 (75)
T ss_dssp             CCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcee
Confidence            45779999999999999999999999999999999999999998652  4567788889999987654

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=99.10  E-value=4.3e-10  Score=64.60  Aligned_cols=65  Identities=28%  Similarity=0.435  Sum_probs=56.9

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAE   67 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~   67 (136)
                      ++..|++.||+|.+|..+++++|.+++||..+.+++..+++.+..+.  .+.+.+.+.+...|+.++
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   69 (71)
T 2ldi_A            3 KTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA   69 (71)
T ss_dssp             EEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred             EEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence            45679999999999999999999999999999999999999987642  567788888999998654

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.08  E-value=6.8e-10  Score=73.35  Aligned_cols=67  Identities=16%  Similarity=0.332  Sum_probs=59.8

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      .++.|+|.||.|.+|+.+|+++|.+++||..+.+++..+++.|..+.  ++.+.+.+.|.+.||.++++
T Consensus        80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~  148 (149)
T 2ew9_A           80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASLA  148 (149)
T ss_dssp             SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEECC
T ss_pred             ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEec
Confidence            35679999999999999999999999999999999999999998653  57888999999999987654

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=99.06  E-value=2.2e-09  Score=66.23  Aligned_cols=70  Identities=17%  Similarity=0.137  Sum_probs=61.2

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWPFP   72 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~~~   72 (136)
                      .+..|.|.||+|.+|..+|+++|..++||..+.+++..+.+.|..+.  +....+...|..+|+.+.++...
T Consensus        16 ~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~   87 (95)
T 2kkh_A           16 QKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVNG   87 (95)
T ss_dssp             EEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCCC
T ss_pred             EEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecCC
Confidence            45789999999999999999999999999999999999999998643  56788899999999988776543

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=99.04  E-value=1.4e-09  Score=72.10  Aligned_cols=69  Identities=17%  Similarity=0.330  Sum_probs=61.3

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWPF   71 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~~   71 (136)
                      .++.|+|.||+|.+|+.+|+++|.+++||..+.+++..+++.|..+.  ++.+.+.+.|.++||.+.++..
T Consensus        74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~  144 (151)
T 1p6t_A           74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE  144 (151)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCS
T ss_pred             cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcCc
Confidence            34679999999999999999999999999999999999999998642  6789999999999998877653

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.99  E-value=3.4e-09  Score=75.69  Aligned_cols=69  Identities=19%  Similarity=0.413  Sum_probs=62.5

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCCCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPFPG   73 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~~~~   73 (136)
                      .+++|+|+ |+|.+|+.+|+++|++++||.++.+++..++++|... .+.+.+.+.|+++|+.+.++....
T Consensus         6 ~~~~l~V~-MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aI~~~Gy~a~~~~~~~   74 (222)
T 1qup_A            6 YEATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKDAIIRGAGK   74 (222)
T ss_dssp             EEEEEECC-CCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHHTTCCCEEECCSC
T ss_pred             eEEEEEEc-cccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEecc-CCHHHHHHHHHHcCCccccccCCC
Confidence            45689998 9999999999999999999999999999999999876 788999999999999988876543

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.96  E-value=5.6e-09  Score=72.88  Aligned_cols=69  Identities=16%  Similarity=0.298  Sum_probs=60.0

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCCCC
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWPFP   72 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~~~   72 (136)
                      ++.|+|.||+|.+|+.+|+++|.+++||..+.+++..+++.|..+.  ++.+.+.+.|..+||.+.++...
T Consensus       123 ~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~  193 (202)
T 2rop_A          123 TTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVSES  193 (202)
T ss_dssp             EEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC---
T ss_pred             EEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcCCC
Confidence            4679999999999999999999999999999999999999998642  57888999999999988776543

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=98.86  E-value=1.4e-08  Score=66.90  Aligned_cols=68  Identities=19%  Similarity=0.281  Sum_probs=59.6

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      +++.|.|.||+|.+|+.+++++|.+++||..+.+++..+++.+..+.  ...+.+.+.+...|+.+.+..
T Consensus         4 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~   73 (149)
T 2ew9_A            4 QKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVME   73 (149)
T ss_dssp             EEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred             EEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEeec
Confidence            66889999999999999999999999999999999999999987642  567889999999999876543

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.84  E-value=1.4e-08  Score=73.68  Aligned_cols=67  Identities=19%  Similarity=0.439  Sum_probs=60.9

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWPF   71 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~~   71 (136)
                      .+++|+|+ |+|.+|+.+|+++|++++||..+.+++..++++|... .+.+.+.+.|+++||.+.++..
T Consensus         7 ~~~~l~V~-MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aIe~~Gy~a~~~~~   73 (249)
T 1jk9_B            7 YEATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKDAIIRGA   73 (249)
T ss_dssp             EEEEEECC-CCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTTCCCEEEEE
T ss_pred             eeEEEEEe-eccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecC-CCHHHHHHHHHHhCCCcccccC
Confidence            35789998 9999999999999999999999999999999999876 7889999999999999877654

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.60  E-value=3.6e-07  Score=60.30  Aligned_cols=64  Identities=16%  Similarity=0.411  Sum_probs=55.3

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAA   66 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~   66 (136)
                      ++..|.|.||+|.+|..++++.|.+++||..+.+++..+++.+..+.  .+...+.+.+...|+.+
T Consensus         6 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   71 (151)
T 1p6t_A            6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (151)
T ss_dssp             EEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             eEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence            45679999999999999999999999999999999999998887542  56778888888888854

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.58  E-value=2.7e-07  Score=75.85  Aligned_cols=66  Identities=24%  Similarity=0.363  Sum_probs=59.5

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      +++++|+||+|.+|+.+++++|++++||.++++++..++++|+.+.  .+.+++.+.+.+.|+++...
T Consensus         3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~~   70 (723)
T 3j09_A            3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVDE   70 (723)
T ss_dssp             CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESSC
T ss_pred             eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCccccc
Confidence            4679999999999999999999999999999999999999998642  68899999999999987544

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.49  E-value=3.7e-07  Score=63.55  Aligned_cols=60  Identities=17%  Similarity=0.400  Sum_probs=53.2

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHh
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRA   62 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~   62 (136)
                      .++.|+|.||+|.+|+.+|+++|.+++||..+.+++..+++.|..+.  .....+.+.|...
T Consensus        20 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~   81 (202)
T 2rop_A           20 VTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL   81 (202)
T ss_dssp             CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred             EEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            45679999999999999999999999999999999999999998642  5678888888877

>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3

Probab=88.36  E-value=2.6  Score=25.61  Aligned_cols=57  Identities=18%  Similarity=0.175  Sum_probs=41.4

Q ss_pred             EEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC-CCHHHHHHHHHHhCcccccCC
Q 047678            5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         5 v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~-~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      .++.+.|+.|+.-..+++++|.++..         .+.+.|..+. .....|.+.+++.|+.+....
T Consensus        27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---------Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e   84 (98)
T 1jdq_A           27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVLEIE   84 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            56888899999999999999998732         2344444332 346778888899998765543

>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}

Probab=85.86  E-value=3.3  Score=25.13  Aligned_cols=52  Identities=25%  Similarity=0.341  Sum_probs=38.2

Q ss_pred             HHHHHHHhCCCCeeEEEEecc-----Cc--EEEEEecCCCHHHHHHHHHHhCcccccCC
Q 047678           19 SKCKRALFKLKGVEEVEIEME-----VQ--KITVRGYALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus        19 ~~v~~~l~~~~gv~~v~vd~~-----~~--~v~V~~~~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      -.+-+.|.+++||..+++...     +.  ++++.|..++.+.+.+.|.+.|.....+.
T Consensus        21 vd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSID   79 (96)
T 2x3d_A           21 VDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSID   79 (96)
T ss_dssp             HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence            356678899999988876543     33  44556766999999999999997655443

>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1

Probab=85.37  E-value=1.9  Score=26.37  Aligned_cols=52  Identities=25%  Similarity=0.323  Sum_probs=38.4

Q ss_pred             HHHHHHHhCCCCeeEEEEecc-----Cc--EEEEEecCCCHHHHHHHHHHhCcccccCC
Q 047678           19 SKCKRALFKLKGVEEVEIEME-----VQ--KITVRGYALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus        19 ~~v~~~l~~~~gv~~v~vd~~-----~~--~v~V~~~~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      -.+-+.|.+++||..+++...     +.  ++++.|..++.+.+.+.|.+.|.....+.
T Consensus        22 vdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSID   80 (100)
T 3bpd_A           22 IVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSVD   80 (100)
T ss_dssp             HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEEE
T ss_pred             HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence            456678899999988876543     33  34556766899999999999998665554

>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1

Probab=83.98  E-value=2.9  Score=25.45  Aligned_cols=52  Identities=31%  Similarity=0.469  Sum_probs=37.5

Q ss_pred             HHHHHHHhCCCCeeEEEEe-----ccCc--EEEEEecCCCHHHHHHHHHHhCcccccCC
Q 047678           19 SKCKRALFKLKGVEEVEIE-----MEVQ--KITVRGYALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus        19 ~~v~~~l~~~~gv~~v~vd-----~~~~--~v~V~~~~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      -.+-+.|.++.||..+++.     ..+.  ++++.|..++.+.+.+.|.+.|.....+.
T Consensus        22 ~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSID   80 (97)
T 2raq_A           22 PEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSVD   80 (97)
T ss_dssp             HHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEEE
T ss_pred             HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEeee
Confidence            3566778888898887654     3444  44556766999999999999998665543

>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A

Probab=83.53  E-value=4.8  Score=23.39  Aligned_cols=57  Identities=4%  Similarity=-0.013  Sum_probs=40.7

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec-CCCHHHHHHHHHHhCcccccC
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY-ALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~-~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ..++.+.|+.|+....+++++|.++..         .+.+.|..+ ......+.+.+++.|+.....
T Consensus        10 ~~~lD~rGl~CP~Pvl~~kkal~~l~~---------G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~   67 (82)
T 3lvj_C           10 DHTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAK   67 (82)
T ss_dssp             SEEEECTTCCTTHHHHHHHHHHHTSCT---------TCEEEEEECCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence            356888899999999999999998732         223344332 244567888888999876554

>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3

Probab=83.21  E-value=2.3  Score=25.88  Aligned_cols=57  Identities=12%  Similarity=0.014  Sum_probs=39.4

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec-CCCHHHHHHHHHHhCcccccC
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY-ALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~-~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ..++.+.|+.|+.-.-+++++|.+++.         .+.+.|..+ ......|.+.+++.|+.+...
T Consensus        27 ~~~LD~rGl~CP~PvlktkkaL~~l~~---------Ge~L~Vl~dd~~a~~dIp~~~~~~G~~v~~~   84 (97)
T 1je3_A           27 DYRLDMVGEPCPYPAVATLEAMPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI   84 (97)
T ss_dssp             EEEECSBCCSSSSSTHHHHHHTTTCCS---------SCEEEEEEBCSSSSCHHHHHHHHHTCSEEEE
T ss_pred             CeEEeCCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCcchHHHHHHHHHHCCCEEEEE
Confidence            456788899999999999999998732         223333332 234456777888899876543

>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}

Probab=80.54  E-value=6.6  Score=23.16  Aligned_cols=56  Identities=18%  Similarity=0.131  Sum_probs=39.2

Q ss_pred             EEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC-CCHHHHHHHHHHhCcccccC
Q 047678            6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         6 ~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~-~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ++.+.|+.|+.-..+++++|.++..        ..+.+.|..+. ...+.|.+.+++.|+.+...
T Consensus         3 ~lD~rGl~CP~Pvl~~kkal~~l~~--------~G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~   59 (87)
T 3hz7_A            3 TIDALGQVCPIPVIRAKKALAELGE--------AGGVVTVLVDNDISRQNLQKMAEGMGYQSEYL   59 (87)
T ss_dssp             EEECTTCCTTHHHHHHHHHHHTTGG--------GCCEEEEEESSHHHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEcCCCCCCHHHHHHHHHHHhccC--------CCCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence            4677799999999999999998730        12334444331 34567788888999887554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1mwza_	73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	4e-11
d1sb6a_	64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	9e-11
d1osda_	72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	2e-10
d1p6ta2	79	d.58.17.1 (A:73-151) Potential copper-translocatin	6e-10
d1qupa2	72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	7e-10
d2ggpb1	72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	1e-09
d1kvja_	79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	1e-09
d1p6ta1	72	d.58.17.1 (A:1-72) Potential copper-translocating	2e-09
d1cpza_	68	d.58.17.1 (A:) Copper chaperone {Enterococcus hira	4e-09
d1fe0a_	66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	8e-09
d2qifa1	69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	9e-09
d1cc8a_	72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	2e-08
d2aw0a_	72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	4e-08
d1q8la_	84	d.58.17.1 (A:) Menkes copper-transporting ATPase {	1e-07
d3bpda1	91	d.58.61.1 (A:1-91) Uncharacterized protein AF1549	0.001
d2raqa1	93	d.58.61.1 (A:3-95) Uncharacterized protein MTH889	0.001

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 52.9 bits (127), Expect = 4e-11
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
             +V  +DC  CA K + A+ +L GV +V++    +K+ V        +V  A+++AG 
Sbjct: 5  YSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGY 64

Query: 65 AAEP 68
          +   
Sbjct: 65 SLRD 68

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

 Score = 51.9 bits (124), Expect = 9e-11
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
          +++ VP + CE CA    +A+        V++++  +K+T+   AL E+++  AI  AG 
Sbjct: 3  IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITS-ALGEEQLRTAIASAGH 61

Query: 65 AAE 67
            E
Sbjct: 62 EVE 64

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

 Score = 50.9 bits (122), Expect = 2e-10
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVR--GYALDEKKVLKAIKRA 62
          V + VP + C  C    K+A+ K++GV +V++  E ++  V         +K+ KA   A
Sbjct: 5  VTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADA 64

Query: 63 GKAAE 67
          G  + 
Sbjct: 65 GYPSS 69

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 50.3 bits (120), Expect = 6e-10
 Identities = 12/66 (18%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRA 62
           E  +  + C  CA++ ++ L K++GV    +   ++ +TV           + +A+ + 
Sbjct: 4  AEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKL 63

Query: 63 GKAAEP 68
          G   + 
Sbjct: 64 GYKLKL 69

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.8 bits (119), Expect = 7e-10
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
              +P + CE C +  K  L  + G+  +  ++E Q ++V         ++  ++  GK
Sbjct: 8  ATYAIP-MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSV-APSTIINTLRNCGK 65

Query: 65 AA 66
           A
Sbjct: 66 DA 67

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (118), Expect = 1e-09
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY-ALDEKKVLKAIKRAG 63
          V + V  + C  C +     L  LKGV + +I +   +  V     +    + + I+  G
Sbjct: 4  VILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCG 63

Query: 64 KAAEPW 69
             E  
Sbjct: 64 FDCEIL 69

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 1e-09
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRA 62
          V + V  + C  C    ++ + K+ GV  +++ +E +  T+         K + +AI   
Sbjct: 10 VTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDM 69

Query: 63 GKAAEP 68
          G  A  
Sbjct: 70 GFDAVI 75

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 48.6 bits (116), Expect = 2e-09
 Identities = 10/61 (16%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY--ALDEKKVLKAIKRA 62
          + ++V  + C  CA++ ++ L ++ GV +  + +  + + V           + + I++ 
Sbjct: 8  IAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKL 67

Query: 63 G 63
          G
Sbjct: 68 G 68

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

 Score = 47.5 bits (113), Expect = 4e-09
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 6  EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAG 63
          E  V  + C  C ++ + A+ ++ GV++V+++++ +K  V+     +   ++ +AI   G
Sbjct: 3  EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELG 62

Query: 64 KAAE 67
            AE
Sbjct: 63 YQAE 66

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 8e-09
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGK 64
           E  V  + C GCA    R L KL G  + +I++  +K+ +         +L  +K+ GK
Sbjct: 3  HEFSVD-MTCGGCAEAVSRVLNKLGG-VKYDIDLPNKKVCIESEH-SMDTLLATLKKTGK 59

Query: 65 AAE 67
             
Sbjct: 60 TVS 62

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

 Score = 46.7 bits (111), Expect = 9e-09
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRA 62
            ++V  + C+ C    + ++ +L GV  V + +E  K+ V   A  +  K +  AI+  
Sbjct: 4  KTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQ 63

Query: 63 G-KAAE 67
          G   A+
Sbjct: 64 GYDVAK 69

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.3 bits (110), Expect = 2e-08
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 11 NLDCEGCASKCKRALFKLK-GVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAA 66
           + C GC+    + L KL+  V +++I +E Q + V         +L+ IK+ GK  
Sbjct: 11 VMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTL-PYDFILEKIKKTGKEV 66

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (107), Expect = 4e-08
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 5  VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRA 62
            + +  + C  C    +  + K  GV+ + + +     TV         + +  AI+  
Sbjct: 5  TVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDM 64

Query: 63 GKAAE 67
          G  A 
Sbjct: 65 GFDAT 69

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 4  MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQK--ITVRGYALDEKKVLKAIKR 61
          +++++V  + C  C S  +  + KL+GV+ +++ ++ Q+  I  + + +  +++ K I+ 
Sbjct: 10 VLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEA 69

Query: 62 AGKAAEPWPFPGY 74
           G  A     P Y
Sbjct: 70 MGFPAFVKKQPKY 82

>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 7/48 (14%)

Query: 23 RALFKLKGVEEV-----EIEMEVQ--KITVRGYALDEKKVLKAIKRAG 63
            L +L+ V+ V     EI+   +  KIT+ G  LD +++   I+  G
Sbjct: 24 LKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMG 71

>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 93

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 7/48 (14%)

Query: 23 RALFKLKGVEEV-----EIEMEVQ--KITVRGYALDEKKVLKAIKRAG 63
          + L +L+GVE V     EI+ E +  K+T++G  LD  ++ +AI+  G
Sbjct: 24 KYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYG 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.61
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.59
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.58
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.58
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.58
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.57
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.56
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.56
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.54
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.51
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.5
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.48
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.48
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.48
d2raqa1	93	Uncharacterized protein MTH889 {Methanobacterium t	80.83
d1dcja_	81	SirA {Escherichia coli [TaxId: 562]}	80.43

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3e-15  Score=87.86  Aligned_cols=69  Identities=16%  Similarity=0.246  Sum_probs=63.8

Q ss_pred             CceEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            1 MQLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         1 ~~~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      |+++..|+|+||.|.+|+.+|+++|.+++||.++.+++..++++|..++  ++.+.+.+.|.++||++.+.
T Consensus         1 mt~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~l~   71 (72)
T d2aw0a_           1 LTQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS   71 (72)
T ss_dssp             CCEEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSEEEEC
T ss_pred             CcEEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEeC
Confidence            7889999999999999999999999999999999999999999998643  78999999999999988653

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.59  E-value=7.9e-15  Score=86.04  Aligned_cols=68  Identities=26%  Similarity=0.425  Sum_probs=63.1

Q ss_pred             ceEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            2 QLMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         2 ~~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      ++++.|+|.||.|.+|+.+|+++|++++||.++.+|+..+++.|+.+.  ++.+++.+.|..+||+++++
T Consensus         2 tqt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~a~v~   71 (72)
T d1osda_           2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK   71 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhcCCCeEeC
Confidence            467899999999999999999999999999999999999999998643  78999999999999999876

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=4.2e-15  Score=87.22  Aligned_cols=68  Identities=21%  Similarity=0.312  Sum_probs=62.9

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC-CCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA-LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~-~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      +++.|+|+||+|.+|+.+|+++|.+++||.++.+|+..++++|+.+. ++.+++.+.|..+||.++++.
T Consensus         2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~a~~~~   70 (72)
T d2ggpb1           2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR   70 (72)
T ss_dssp             EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCCCEEEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCCeEEcc
Confidence            67899999999999999999999999999999999999999998653 789999999999999998764

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=8.9e-15  Score=85.82  Aligned_cols=66  Identities=18%  Similarity=0.414  Sum_probs=61.7

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      ....|.| +|+|.+|+++|+++|++++||.++.+|+..++++|++. ++++++++.|+++||++.++.
T Consensus         6 ~~~~f~V-~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~-~~~~~i~~~I~~~G~~A~l~g   71 (72)
T d1qupa2           6 YEATYAI-PMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKDAIIRG   71 (72)
T ss_dssp             EEEEEEC-CCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHHTTCCCEEEC
T ss_pred             EEEEEEE-ccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEee-CCHHHHHHHHHHhCCCEEEec
Confidence            4578999 59999999999999999999999999999999999987 899999999999999998764

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.58  E-value=4.3e-15  Score=85.75  Aligned_cols=63  Identities=29%  Similarity=0.524  Sum_probs=59.3

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccC
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      +.+|+| +|+|.+|+.+|+++|++++|+ ++.+|+.+++++|.++ ++++.++++|+++||+++++
T Consensus         2 k~ef~V-~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~-~~~~~i~~~I~~~Gy~a~li   64 (66)
T d1fe0a_           2 KHEFSV-DMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE-HSMDTLLATLKKTGKTVSYL   64 (66)
T ss_dssp             EEEEEE-CCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEES-SCHHHHHHHHHTTTSCEEEE
T ss_pred             CEEEEE-ccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEee-CCHHHHHHHHHHhCCeEEEe
Confidence            468999 699999999999999999998 6999999999999998 89999999999999999876

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.57  E-value=2.9e-15  Score=86.03  Aligned_cols=63  Identities=27%  Similarity=0.552  Sum_probs=59.5

Q ss_pred             EEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccc
Q 047678            4 MVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAE   67 (136)
Q Consensus         4 ~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~   67 (136)
                      +++|+|+||+|.+|+.+|+++|++++||.++.+|+..++++|+++ ++++.+.+.|..+||+++
T Consensus         2 t~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~-~~~~~i~~~i~~~GY~ve   64 (64)
T d1sb6a_           2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSA-LGEEQLRTAIASAGHEVE   64 (64)
T ss_dssp             EEEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESS-SCHHHHHHHHHHHCCCCC
T ss_pred             eEEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccC-CCHHHHHHHHHHcCCCCC
Confidence            467999999999999999999999999999999999999999987 899999999999999875

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.56  E-value=2.2e-14  Score=83.45  Aligned_cols=64  Identities=23%  Similarity=0.403  Sum_probs=59.5

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAA   66 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~   66 (136)
                      ++..|+|.||+|.+|+.+|+++|++++||.++++|+..+++++..+.  ++.+.+.+.|+.+||++
T Consensus         2 ~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~   67 (69)
T d2qifa1           2 EQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             cEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            66789999999999999999999999999999999999999999753  78999999999999975

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.56  E-value=1.3e-14  Score=84.25  Aligned_cols=64  Identities=23%  Similarity=0.459  Sum_probs=59.2

Q ss_pred             EEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccC
Q 047678            6 EVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus         6 ~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~   69 (136)
                      +|+|+||+|.+|+.+|+++|++++||.++.+|+..++++|+.+.  ++.+.+.+.|.++||.++++
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~vi   68 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI   68 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEEC
Confidence            58999999999999999999999999999999999999998643  78999999999999998764

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=3.2e-14  Score=83.39  Aligned_cols=63  Identities=29%  Similarity=0.504  Sum_probs=59.0

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCC-CeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLK-GVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAE   67 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~-gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~   67 (136)
                      ++++|+|+ |+|.+|+.+|+++|.++. ||.++.+|+..++++|.+. ++++++++.|+++||++.
T Consensus         4 kt~~f~V~-MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~-~~~~~i~~~i~~~G~~~~   67 (72)
T d1cc8a_           4 KHYQFNVV-MTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKIKKTGKEVR   67 (72)
T ss_dssp             EEEEEEEC-CCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTSSCEE
T ss_pred             EEEEEEEC-cCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeec-CCHHHHHHHHHHHCCccC
Confidence            67899995 999999999999999995 9999999999999999998 999999999999999875

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=8.4e-14  Score=81.74  Aligned_cols=68  Identities=25%  Similarity=0.384  Sum_probs=61.4

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecCCCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      +++.|+|.||+|.+|+.+|+++|.+++||..+.+++..++++|..+....+.+.+.|.++||.++...
T Consensus         3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~GY~v~~~~   70 (73)
T d1mwza_           3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDEQ   70 (73)
T ss_dssp             CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCCCCBCC
T ss_pred             CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHHHcCCcccCCC
Confidence            56889999999999999999999999999999999999999999765567889999999999876543

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.50  E-value=7.3e-14  Score=83.23  Aligned_cols=71  Identities=17%  Similarity=0.321  Sum_probs=64.5

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCCCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWPFPG   73 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~~~~   73 (136)
                      +++.|.|.||.|.+|+.+|+++|..++||.++.+|+..+++.|+.+.  .+.+++.+.|..+||++.++....
T Consensus         2 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~~~   74 (79)
T d1p6ta2           2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGEQD   74 (79)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCSSS
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHHHHCCceEECCccc
Confidence            57899999999999999999999999999999999999999998642  789999999999999998876543

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.48  E-value=1.3e-13  Score=80.68  Aligned_cols=64  Identities=16%  Similarity=0.410  Sum_probs=59.0

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec--CCCHHHHHHHHHHhCccc
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY--ALDEKKVLKAIKRAGKAA   66 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~--~~~~~~v~~~l~~~g~~~   66 (136)
                      +++.|+|+||+|.+|+.+|+++|.+++||.++.+++..++++++.+  ..+.+.+.+.|+++||++
T Consensus         6 ~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~v   71 (72)
T d1p6ta1           6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (72)
T ss_dssp             EEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             eEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            5688999999999999999999999999999999999999999864  278999999999999874

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.8e-13  Score=81.46  Aligned_cols=68  Identities=21%  Similarity=0.309  Sum_probs=62.4

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      .++.|.|+||+|.+|+.+|+++|++++||..+++++..+++.|+.+.  ++...+.+.|+++||++.+..
T Consensus         8 ~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~~~~~~   77 (79)
T d1kvja_           8 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN   77 (79)
T ss_dssp             EEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCCcEeCC
Confidence            56889999999999999999999999999999999999999998642  789999999999999987654

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-13  Score=83.23  Aligned_cols=69  Identities=20%  Similarity=0.371  Sum_probs=63.1

Q ss_pred             eEEEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEecC--CCHHHHHHHHHHhCcccccCCC
Q 047678            3 LMVEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGYA--LDEKKVLKAIKRAGKAAEPWPF   71 (136)
Q Consensus         3 ~~v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~~--~~~~~v~~~l~~~g~~~~~~~~   71 (136)
                      ..+.|+|+||.|.+|+.+|+++|.+++||.++.+|+..++++|..+.  .+.+.+.+.|..+||++.+...
T Consensus         9 ~~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~~Gy~a~~~~~   79 (84)
T d1q8la_           9 VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ   79 (84)
T ss_dssp             EEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred             EEEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHHHhCCccEEcCC
Confidence            46789999999999999999999999999999999999999998653  7889999999999999887754

>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=80.83  E-value=2.4  Score=24.18  Aligned_cols=53  Identities=30%  Similarity=0.443  Sum_probs=38.0

Q ss_pred             HHHHHHHHHhCCCCeeEEEEe-----ccCcEE--EEEecCCCHHHHHHHHHHhCcccccC
Q 047678           17 CASKCKRALFKLKGVEEVEIE-----MEVQKI--TVRGYALDEKKVLKAIKRAGKAAEPW   69 (136)
Q Consensus        17 C~~~v~~~l~~~~gv~~v~vd-----~~~~~v--~V~~~~~~~~~v~~~l~~~g~~~~~~   69 (136)
                      -...+-+.|.+++||..+++.     .....+  ++.|..++.+++.+.|.+.|......
T Consensus        18 ~i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiEG~~idyd~i~~~IE~~Gg~IHSI   77 (93)
T d2raqa1          18 IIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSV   77 (93)
T ss_dssp             CHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEE
T ss_pred             CHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeEEEE
Confidence            345567778889998887654     444444  45576699999999999999765544

>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]

Probab=80.43  E-value=2.2  Score=23.38  Aligned_cols=57  Identities=4%  Similarity=0.002  Sum_probs=41.2

Q ss_pred             EEEEecCCCChhHHHHHHHHHhCCCCeeEEEEeccCcEEEEEec-CCCHHHHHHHHHHhCcccccCC
Q 047678            5 VEVRVPNLDCEGCASKCKRALFKLKGVEEVEIEMEVQKITVRGY-ALDEKKVLKAIKRAGKAAEPWP   70 (136)
Q Consensus         5 v~~~v~~m~C~~C~~~v~~~l~~~~gv~~v~vd~~~~~v~V~~~-~~~~~~v~~~l~~~g~~~~~~~   70 (136)
                      .++.+.|+.|+....+++++|.++..         .+.+.|..+ +.....+...+++.|+++..+.
T Consensus        10 ~~lD~~G~~CP~P~l~~k~al~~~~~---------G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~~   67 (81)
T d1dcja_          10 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAKE   67 (81)
T ss_dssp             EEECCTTCCTTHHHHHHHHHHHHCCT---------TCCEEEEECSTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             eEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEeCCCcHHHHHHHHHHHcCCEEEEEE
Confidence            56778899999999999999998732         233444433 2456777888889998775544