Citrus Sinensis ID: 047694

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
SVKALTIQNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWVSTYSYSRDRTVEMYLWSVAQYFEPHFSRDDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTLHA
ccHHcHHcccccHHHHHHHHHHHcccccccccHHHHHHcHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccc
cHHHHHHccccccHHHHHHHHHHHccHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHEccccccccHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHc
SVKALTIQNYLDQNLAKHINDAleqplhmgvprieahkfipfyehddskndTLLKFAKldfnrvqlphqqeLAYITRWVStysysrdrTVEMYLWSVAQyfephfsrddaydaygtlgelrSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAqwfhegymppfdermsnaIVTGTYIAGIDAYewlrsqpkimtASFTLSRLIADLAEQERGHVASVVESYMKeygtsgeeTAEEFKKMIADGWKDineecmrptivpnfqcDSLMLLLTLHA
SVKALTIQNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNrvqlphqqelayitrwVSTYSYSRDRTVEMYLWSVAQYFEPHFSRDDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTLHA
SVKALTIQNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWVSTYSYSRDRTVEMYLWSVAQYFEPHFSRDDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTLHA
****LTIQNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWVSTYSYSRDRTVEMYLWSVAQYFEPHFSRDDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELN********SYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYG********EFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTL**
*****************HINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWVSTYSYSRDRTVEMYLWSVAQYFEPHFSRDDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTLHA
SVKALTIQNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWVSTYSYSRDRTVEMYLWSVAQYFEPHFSRDDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTLHA
SVKALTIQNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWVSTYSYSRDRTVEMYLWSVAQYFEPHFSRDDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTLHA
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SVKALTIQNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWVSTYSYSRDRTVEMYLWSVAQYFEPHFSRDDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYIAGIDAYEWLRSQPKIMTASFTLSRLIADLAEQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTLHA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query308 2.2.26 [Sep-21-2011]
Q9XJ32556 Vetispiradiene synthase 1 N/A no 0.918 0.508 0.428 8e-72
F6M8H7562 Probable sesquiterpene sy N/A no 0.935 0.512 0.423 8e-72
P59287601 Casbene synthase, chlorop N/A no 0.905 0.464 0.424 3e-71
G5CV46555 Viridiflorene synthase OS N/A no 0.918 0.509 0.418 2e-70
B5A435559 Sesquiterpene synthase OS N/A no 0.938 0.516 0.415 6e-70
F6M8H5562 Probable sesquiterpene sy N/A no 0.935 0.512 0.420 7e-70
Q9FQ27544 (E,E)-germacrene B syntha N/A no 0.948 0.536 0.401 1e-69
E3W208562 Sesquiterpene synthase OS N/A no 0.964 0.528 0.411 3e-69
Q39978520 Vetispiradiene synthase 1 N/A no 0.925 0.548 0.413 3e-69
E3W207559 Sesquiterpene synthase OS N/A no 0.935 0.515 0.420 4e-69
>sp|Q9XJ32|VTSS1_SOLTU Vetispiradiene synthase 1 OS=Solanum tuberosum GN=PVS1 PE=1 SV=1 Back     alignment and function desciption
 Score =  270 bits (691), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 137/320 (42%), Positives = 195/320 (60%), Gaps = 37/320 (11%)

Query: 10  YLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQ 69
           +L   L+K +  ALEQ LH  +PR+E   FI  YE ++ KND LL+FAKLDFN +Q+ H+
Sbjct: 190 HLKSPLSKQVTHALEQSLHKSIPRVETRYFISIYEEEEQKNDVLLQFAKLDFNLLQMLHK 249

Query: 70  QELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR---------------D 108
           QEL+ ++RW      V+T  Y+RDR VE Y W++  Y EP +S+               D
Sbjct: 250 QELSEVSRWWKDLDFVTTLPYARDRAVECYFWTMGVYAEPQYSQARVMLAKTIAMISIVD 309

Query: 109 DAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYS 168
           D +DAYG + EL  +TDA++RWDI+ I  LP+YMK  + AL + +++   EL+++GRS  
Sbjct: 310 DTFDAYGIVKELEIYTDAIQRWDISQIDRLPDYMKISYKALLDLYNDYEMELSKDGRSDV 369

Query: 169 VSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIV------------TGTYIAGID 216
           V + K+ MK + R YFVEA+WF EGYMPP  E +SNA+              G   A   
Sbjct: 370 VHYAKERMKEIVRNYFVEAKWFIEGYMPPVSEYLSNALATSTYYLLTTTSYLGMKSANKQ 429

Query: 217 AYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFK 272
            +EWL   PKI+ A+ TL R+I D+A    E+ RG +A+ +E YM++YG S E+  E+F+
Sbjct: 430 DFEWLAKNPKILEANVTLCRVIDDIATYEVEKGRGQIATGIECYMRDYGVSTEKAMEKFQ 489

Query: 273 KMIADGWKDINEECMRPTIV 292
           +M    WKD+NE  +RPT V
Sbjct: 490 EMAETAWKDVNEGILRPTPV 509
Sesquiterpene synthase that catalyzes the formation of vetispiradiene from trans,trans-farnesyl diphosphate. The initial internal cyclization produces the monocyclic intermediate germacrene A.
Solanum tuberosum (taxid: 4113)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 2EC: 1
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|P59287|CASS_RICCO Casbene synthase, chloroplastic OS=Ricinus communis GN=RCOM_1574350 PE=1 SV=1 Back     alignment and function description
>sp|G5CV46|TPS31_SOLLC Viridiflorene synthase OS=Solanum lycopersicum GN=TPS31 PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|Q9FQ27|TPSGB_SOLHA (E,E)-germacrene B synthase OS=Solanum habrochaites GN=SSTLH1 PE=1 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|Q39978|VTSS1_HYOMU Vetispiradiene synthase 1 (Fragment) OS=Hyoscyamus muticus PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
255544616 555 Casbene synthase, chloroplast precursor, 0.922 0.511 0.448 2e-76
317106724 555 JHL17M24.6 [Jatropha curcas] 0.961 0.533 0.440 4e-76
317106718 551 JHL22C18.7 [Jatropha curcas] 0.902 0.504 0.466 7e-76
317106722 556 JHL17M24.3 [Jatropha curcas] 0.951 0.526 0.440 6e-75
224084642 555 predicted protein [Populus trichocarpa] 0.918 0.509 0.462 2e-74
255544546 614 Casbene synthase, chloroplast precursor, 0.931 0.467 0.430 6e-74
380751740 567 terpene synthase [Camellia sinensis] 0.883 0.479 0.451 9e-73
284468417 598 casbene synthase [Euphorbia esula] 0.938 0.483 0.436 2e-72
284468415 597 casbene synthase [Triadica sebifera] 0.941 0.485 0.444 5e-72
194739595 572 germacrene B synthase [Cistus creticus s 0.909 0.489 0.430 7e-72
>gi|255544616|ref|XP_002513369.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] gi|223547277|gb|EEF48772.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 151/337 (44%), Positives = 214/337 (63%), Gaps = 53/337 (15%)

Query: 7   IQNYLDQN---LAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNR 63
           ++++ DQ+   LAK+I ++L +P H G+ R+EA ++I FYE D+S+N+TLLKFAKLDFNR
Sbjct: 175 LESFADQSSPHLAKYIRNSLLRPHHQGIQRVEARQYISFYEEDESRNETLLKFAKLDFNR 234

Query: 64  VQLPHQQELAYITRW---------------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR- 107
           +QL H+QELA ++R+                    Y RDR VE YLW++  +FEP ++  
Sbjct: 235 LQLLHKQELASLSRYKKYIAQIIIWEDLNLAKELPYIRDRLVETYLWAIGAHFEPQYALS 294

Query: 108 --------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPF 153
                         DD YDAYGTL EL+ FT+A +R DI+ I ELP+YMK L+ AL N F
Sbjct: 295 RAIIAKYTTIVSAVDDTYDAYGTLDELQRFTNAFQRCDIDAIDELPDYMKVLYRALLNFF 354

Query: 154 DELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTY-- 211
           D++ +E+ +EGRSYS S  K+  K + R+Y+VEAQWF +GY+P FDE M N ++T TY  
Sbjct: 355 DQIEDEV-DEGRSYSTSVAKEAFKELVRSYYVEAQWFSDGYVPSFDEYMRNGLITSTYTV 413

Query: 212 -----------IAGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESY 256
                        G   Y+W++S PKI+ A+  + RL+ D+     EQ+RGH AS +E Y
Sbjct: 414 LPAASFIGMENTVGEKEYKWVQSNPKIVKAAKIICRLMDDITTHEDEQKRGHCASSIECY 473

Query: 257 MKEYGTSGEETAEEFKKMIADGWKDINEECMR--PTI 291
           MKEYG S ++  EE +K+ A+ WKD+NEECM+  PT+
Sbjct: 474 MKEYGVSEKKAIEEIQKICANAWKDMNEECMKKPPTV 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|317106724|dbj|BAJ53221.1| JHL17M24.6 [Jatropha curcas] Back     alignment and taxonomy information
>gi|317106718|dbj|BAJ53216.1| JHL22C18.7 [Jatropha curcas] Back     alignment and taxonomy information
>gi|317106722|dbj|BAJ53219.1| JHL17M24.3 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224084642|ref|XP_002307371.1| predicted protein [Populus trichocarpa] gi|222856820|gb|EEE94367.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255544546|ref|XP_002513334.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] gi|223547242|gb|EEF48737.1| Casbene synthase, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|380751740|gb|AFE56211.1| terpene synthase [Camellia sinensis] Back     alignment and taxonomy information
>gi|284468417|gb|ADB90273.1| casbene synthase [Euphorbia esula] Back     alignment and taxonomy information
>gi|284468415|gb|ADB90272.1| casbene synthase [Triadica sebifera] Back     alignment and taxonomy information
>gi|194739595|gb|ACF94469.1| germacrene B synthase [Cistus creticus subsp. creticus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.672 0.373 0.403 4.7e-68
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.597 0.331 0.393 8.5e-50
UNIPROTKB|Q49SP7545 Q49SP7 "Gamma-curcumene syntha 0.681 0.385 0.327 8.6e-47
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.607 0.330 0.330 2.7e-46
TAIR|locus:2091687601 AT3G14490 [Arabidopsis thalian 0.694 0.356 0.342 5.2e-46
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.620 0.347 0.322 5.9e-46
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.607 0.343 0.328 2.1e-45
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.610 0.333 0.331 8.6e-44
TAIR|locus:2178657547 TPS21 "terpene synthase 21" [A 0.454 0.255 0.363 9.3e-43
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.626 0.345 0.339 1.2e-29
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
 Score = 451 (163.8 bits), Expect = 4.7e-68, Sum P(2) = 4.7e-68
 Identities = 96/238 (40%), Positives = 145/238 (60%)

Query:    79 VSTYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSF 123
             +S   Y+RDR VE Y W+V  Y++P +SR               DD YD+YGTL EL   
Sbjct:   262 ISKLPYARDRVVESYFWAVGVYYQPKYSRARIMLTKTIAMTAILDDTYDSYGTLEELDVL 321

Query:   124 TDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAY 183
             T A+ERWDI  I+ LPEY+K  +  +   + +L  ELA+EGRSY+V +  +  K +AR+Y
Sbjct:   322 TKAIERWDIKEINGLPEYIKGFYKQVLKLYQQLEEELAKEGRSYAVYYAIEACKELARSY 381

Query:   184 FVEAQWFHEGYMPPFDERMSNAIVTGT--YIA-----GIDA-----YEWLRSQPKIMTAS 231
              VEA+WF +GY+P F+E + N++VT T  Y+      G+++     +EW   +P+I  A+
Sbjct:   382 AVEAKWFKKGYLPGFEEYLINSLVTSTAGYLNIISFFGVESVTKEDFEWFSKKPRIAVAT 441

Query:   232 FTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEE 285
               ++R+I D+A    E+E+G  A+ ++ YMKE+G S E+  + F +M  + WKDINEE
Sbjct:   442 QIITRVIDDIATYEVEKEKGQSATGIDCYMKEHGVSKEKAMQRFYEMSTNAWKDINEE 499
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0045338 "farnesyl diphosphate metabolic process" evidence=IDA
GO:0051762 "sesquiterpene biosynthetic process" evidence=IDA
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP7 Q49SP7 "Gamma-curcumene synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
TAIR|locus:2091687 AT3G14490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
TAIR|locus:2178657 TPS21 "terpene synthase 21" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-125
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-80
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 5e-75
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 6e-20
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 2e-18
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 2e-07
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 1e-06
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  367 bits (944), Expect = e-125
 Identities = 151/334 (45%), Positives = 199/334 (59%), Gaps = 40/334 (11%)

Query: 11  LDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQ 70
           +D +L+  I  ALE PLH  +PR+EA  +I FYE +D  N+TLL+ AKLDFN +Q  HQ+
Sbjct: 179 IDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQE 238

Query: 71  ELAYITRWV------STYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DD 109
           EL  ++RW       S   ++RDR VE Y W+   YFEP +S                DD
Sbjct: 239 ELKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDD 298

Query: 110 AYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSV 169
            YD YGTL EL  FT+AVERWDI+ I +LPEYMK +F AL N  +E+  EL +EG SY V
Sbjct: 299 TYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVV 358

Query: 170 SFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTY-------------IAGID 216
            + K+  K + +AY VEA+W HEGY+P F+E M NA+V+                I   +
Sbjct: 359 PYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEE 418

Query: 217 AYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFK 272
           A+EWL S+PK++ AS T+ RL+ D+A    E +RG VAS +E YMKEYG S EE  EE K
Sbjct: 419 AFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIK 478

Query: 273 KMIADGWKDINEECMRPTIVPNFQCDSLMLLLTL 306
           KMI D WK++NEE ++P+             L L
Sbjct: 479 KMIEDAWKELNEEFLKPSSDVPRPI--KQRFLNL 510

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 308
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 99.94
PLN0215096 terpene synthase/cyclase family protein 99.85
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.68
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 96.14
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 93.44
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 87.29
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 85.23
TIGR03464266 HpnC squalene synthase HpnC. This family of genes 84.16
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 83.21
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information 
Probab=100.00  E-value=9.4e-90  Score=709.68  Aligned_cols=293  Identities=27%  Similarity=0.403  Sum_probs=281.1

Q ss_pred             cChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCC------------CCHHHHHHHhhhhhhhhhhhHHHHHhHhHh
Q 047694           11 LDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDS------------KNDTLLKFAKLDFNRVQLPHQQELAYITRW   78 (308)
Q Consensus        11 ~~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~------------~n~~lLelAkldFn~~Q~~h~~El~~i~rW   78 (308)
                      ++++|++||+|||++|||+++||||||+||++|+.++.            +|++||||||+|||+||++||+||++|+||
T Consensus       401 ~~~~L~~eV~~AL~~P~~~~l~RlEaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLeLAklDFN~~Qs~hq~EL~~l~rW  480 (784)
T PLN02279        401 LRKYIKKEVEDALNFPYYANLERLANRRSIENYAVDDTRILKTSYRCSNICNQDFLKLAVEDFNFCQSIHREELKQLERW  480 (784)
T ss_pred             cCccHHHHHHHHhcCchhcCccHHHHHHHHHHhccccchhccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhCee
Confidence            57889999999999999999999999999999999986            899999999999999999999999999999


Q ss_pred             h-----cCCCccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchh-hhcc
Q 047694           79 V-----STYSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDIN-CISE  137 (308)
Q Consensus        79 w-----~~l~f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~-~~~~  137 (308)
                      |     .+|||+|||+||||||++|++||||||.               ||+||+|||.|||++||+||+|||.+ .++.
T Consensus       481 wke~~L~~L~faRdr~ve~Yf~aaa~~fEPe~S~aRi~~aK~~~L~tviDD~fD~yGt~eEL~~ft~aVeRWD~~~~~~~  560 (784)
T PLN02279        481 IVENRLDKLKFARQKLAYCYFSAAATLFSPELSDARLSWAKNGVLTTVVDDFFDVGGSEEELENLIQLVEKWDVNGSPDF  560 (784)
T ss_pred             HHhcCCccCCchhhHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHhccccchhh
Confidence            9     8999999999999999999999999999               99999999999999999999999998 5689


Q ss_pred             CCCchHHHHHHHHhHHHHHHHHHH-hcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc----
Q 047694          138 LPEYMKPLFSALSNPFDELNNELA-EEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI----  212 (308)
Q Consensus       138 lp~~mk~~f~al~~~~~ei~~~~~-~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~----  212 (308)
                      ||+|||+||.+|+++++||+.++. +||+ ++.+|++++|++++++|++||+|+.+|++||+||||+|+.+|+|++    
T Consensus       561 lpeymki~f~aL~~t~nei~~~~~~~qGr-~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~vS~~l~~i~l  639 (784)
T PLN02279        561 CSEQVEIIFSALRSTISEIGDKAFTWQGR-NVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYVSFALGPIVL  639 (784)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchhhhhhHHHHH
Confidence            999999999999999999998865 5776 8899999999999999999999999999999999999999999865    


Q ss_pred             ---------cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcC--CCCHHHHHHHHHHHHHH
Q 047694          213 ---------AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEY--GTSGEETAEEFKKMIAD  277 (308)
Q Consensus       213 ---------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~--g~s~EeA~~~i~~lie~  277 (308)
                               +|+++++| .++|+++++++.++||+|||+    |+++|++ |+|+|||+|+  |+|+|||+++++++|++
T Consensus       640 ~~~~~~G~~l~eev~e~-~~~~~L~~l~s~I~RLlNDI~S~e~E~~rG~~-nsV~cYMke~~~gvSeEEAi~~i~~~Ie~  717 (784)
T PLN02279        640 PALYLVGPKLSEEVVDS-PELHKLYKLMSTCGRLLNDIRGFKRESKEGKL-NAVSLHMIHGNGNSTEEEAIESMKGLIES  717 (784)
T ss_pred             HHHHHhCCCCCHHHHhC-cchhHHHHHHHHHHHHHHhccccHhHHhCCCc-ceehhhhccCCCCCCHHHHHHHHHHHHHH
Confidence                     89999999 699999999999999999999    9999998 9999999987  89999999999999999


Q ss_pred             HHHHHHHhhcCC--CCCCHHHHHHHHhhhcc
Q 047694          278 GWKDINEECMRP--TIVPNFQCDSLMLLLTL  306 (308)
Q Consensus       278 ~wk~ln~~~l~~--~~~p~~~~~~~~n~~~~  306 (308)
                      +||+||++++++  +.+|++|+++++|+||+
T Consensus       718 ~wKeLn~~~l~~~~~~vp~~~~~~~ln~aR~  748 (784)
T PLN02279        718 QRRELLRLVLQEKGSNVPRECKDLFWKMSKV  748 (784)
T ss_pred             HHHHHHHHHhccCCCCCCHHHHHHHHHHHHh
Confidence            999999999974  46999999999999997

>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>TIGR03464 HpnC squalene synthase HpnC Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 4e-67
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-67
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 5e-67
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 5e-67
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-67
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 6e-67
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-66
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-65
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 5e-65
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 6e-62
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-40
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 2e-39
2j5c_A569 Rational Conversion Of Substrate And Product Specif 4e-39
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 9e-35
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 4e-34
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 6e-33
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 1e-28
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure 
Iteration: 1

 Score =  251 bits (640), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 136/321 (42%), Positives = 187/321 (58%), Gaps = 38/321 (11%)
Query: 10  YLDQNLAKHINDALEQPLHMGVPRIEAHKFIP-FYEHDDSKNDTLLKFAKLDFNRVQLPH 68
           +L   L + +  ALEQ LH GVPR+E   FI   Y+ + SKN+ LL+FAKLDFN +Q+ H
Sbjct: 181 HLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLDFNLLQMLH 240
Query: 69  QQELAYITRW------VSTYSYSRDRTVEMYLWSVAQYFEPHFSR--------------- 107
           +QELA ++RW      V+T  Y+RDR VE Y W++  YFEP +S+               
Sbjct: 241 KQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV 300
Query: 108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSY 167
           DD +DAYGT+ EL ++TDA++RWDIN I  LP+YMK  + A+ + + +   EL+  GRS+
Sbjct: 301 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSH 360
Query: 168 SVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT------------GTYIAGI 215
            V    + MK V R Y VE+ WF EGY PP  E +SNA+ T            G   A  
Sbjct: 361 IVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKSATE 420
Query: 216 DAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEF 271
             +EWL   PKI+ AS  + R+I D A    E+ RG +A+ +E  M++YG S +E   +F
Sbjct: 421 QDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKF 480
Query: 272 KKMIADGWKDINEECMRPTIV 292
           + M    WKDINE  +RPT V
Sbjct: 481 QNMAETAWKDINEGLLRPTPV 501
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 2e-82
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 5e-78
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 9e-78
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 2e-77
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 2e-77
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-76
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-70
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 6e-70
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 8e-67
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 5e-42
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 8e-17
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-16
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-06
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  258 bits (660), Expect = 2e-82
 Identities = 121/321 (37%), Positives = 181/321 (56%), Gaps = 38/321 (11%)

Query: 11  LDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQ 70
           LD  L++ ++ AL+Q +  G+PR+EA  ++  Y+  +S N  LL+FAK+DFN +Q  H++
Sbjct: 189 LDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRK 248

Query: 71  ELAYITRWVST------YSYSRDRTVEMYLWSVAQYFEPHFSR---------------DD 109
           EL+ I RW           Y+RDR VE Y W    YFEP +S                DD
Sbjct: 249 ELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDD 308

Query: 110 AYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSV 169
            YD+Y T  EL  +T+A+ERWDI CI E+PEYMKP + AL + ++E+   +AE GR Y V
Sbjct: 309 TYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRV 368

Query: 170 SFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTY-------------IAGID 216
            + K+ M  +A++Y VEA+W  + Y P F+E  +NA+ T  Y             I   +
Sbjct: 369 EYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPE 428

Query: 217 AYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFK 272
            ++W  S PKI+ AS  + R + D+A    +  R    S +E YM+EYG + +E  + F 
Sbjct: 429 TFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFN 488

Query: 273 KMIADGWKDINEECMRPTIVP 293
           K +   WKD+N+E ++PT +P
Sbjct: 489 KHVESAWKDLNQEFLKPTEMP 509
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 99.91
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 98.98
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 84.17
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=6.1e-100  Score=762.10  Aligned_cols=299  Identities=40%  Similarity=0.782  Sum_probs=286.4

Q ss_pred             hhhcChhHHHHHHHHhCCCCCCCcchhHHhhhhhhccCCCCCCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh------cC
Q 047694            8 QNYLDQNLAKHINDALEQPLHMGVPRIEAHKFIPFYEHDDSKNDTLLKFAKLDFNRVQLPHQQELAYITRWV------ST   81 (308)
Q Consensus         8 ~~~~~~~l~~eV~~aL~~P~~~~~~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~h~~El~~i~rWw------~~   81 (308)
                      +++++++|++||+|||++|||+++||||||+||++|++++++|++||||||||||+||++||+||++|+|||      ++
T Consensus       186 ~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~  265 (554)
T 3g4d_A          186 VASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRK  265 (554)
T ss_dssp             STTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCccc
Confidence            345788899999999999999999999999999999999999999999999999999999999999999999      78


Q ss_pred             CCccchhHHHHHHHHhhhccCCCCCc---------------cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHHH
Q 047694           82 YSYSRDRTVEMYLWSVAQYFEPHFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLF  146 (308)
Q Consensus        82 l~f~R~r~ve~yf~~~~~~~eP~~s~---------------DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~f  146 (308)
                      |||+|||+||||||++|++|||+||.               ||+||+|||+|||+.||+||+|||.+++++||+|||+||
T Consensus       266 L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f  345 (554)
T 3g4d_A          266 LPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSY  345 (554)
T ss_dssp             CTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHH
Confidence            99999999999999999999999998               999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhhhcccc-------------c
Q 047694          147 SALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVTGTYI-------------A  213 (308)
Q Consensus       147 ~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EAkW~~~g~vPs~eEYl~~~~~S~g~~-------------l  213 (308)
                      .+|+++++||+.++.++||.++++|++++|+++++||++||+|+++||+||+||||+||.+|+|++             +
T Consensus       346 ~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~l  425 (554)
T 3g4d_A          346 KALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIV  425 (554)
T ss_dssp             HHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTS
T ss_pred             HHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCC
Confidence            999999999999998999989999999999999999999999999999999999999999999977             8


Q ss_pred             chhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCcchhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 047694          214 GIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRP  289 (308)
Q Consensus       214 ~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~l~~  289 (308)
                      |+++++|+.++|+++++++.|+||+|||+    |+++|+++|+|+|||+|||+|+|+|+++|++||+++||+||++++++
T Consensus       426 t~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~  505 (554)
T 3g4d_A          426 TPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP  505 (554)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999    99999999999999999999999999999999999999999999998


Q ss_pred             CCCCHHHHHHHHhhhcc
Q 047694          290 TIVPNFQCDSLMLLLTL  306 (308)
Q Consensus       290 ~~~p~~~~~~~~n~~~~  306 (308)
                      +++|++|+++++|+||+
T Consensus       506 ~~~p~~~~~~~~NlaR~  522 (554)
T 3g4d_A          506 TEMPTEVLNRSLNLARV  522 (554)
T ss_dssp             CSSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            89999999999999997
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 308
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-89
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 4e-85
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 3e-27
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-18
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 5e-09
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 2e-08
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  268 bits (687), Expect = 1e-89
 Identities = 82/283 (28%), Positives = 122/283 (43%), Gaps = 39/283 (13%)

Query: 50  NDTLLKFAKLDFNRVQLPHQQELAYITRWV------STYSYSRDRTVEMYLWSVAQYFEP 103
           N  + + AKL+FN +Q  HQQEL  ++RW           + RDR VE + W+V  +   
Sbjct: 2   NPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPH 61

Query: 104 HFSR---------------DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSA 148
                              DD YD YGTL EL  FTD  +RWD   I+ LP YM+  +  
Sbjct: 62  QHGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWG 121

Query: 149 LSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEAQWFHEGYMPPFDERMSNAIVT 208
           + N   +   ++ +E   + + + +  +  +  AYF EA+W+H GY P  DE ++ A ++
Sbjct: 122 VHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKIS 181

Query: 209 GTY--------------IAGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHVA 250
                                   + L     I+  +  + RL  DL     E  RG V 
Sbjct: 182 VASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVP 241

Query: 251 SVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVP 293
             ++ YMKE   S EE  E  K +I + WKD+N         P
Sbjct: 242 KTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFP 284
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 99.96
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.81
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 98.54
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 81.02
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

Probab=100.00  E-value=6.4e-88  Score=637.36  Aligned_cols=258  Identities=32%  Similarity=0.553  Sum_probs=245.4

Q ss_pred             CCHHHHHHHhhhhhhhhhhhHHHHHhHhHhh------cCCCccchhHHHHHHHHhhhccCCCCCc---------------
Q 047694           49 KNDTLLKFAKLDFNRVQLPHQQELAYITRWV------STYSYSRDRTVEMYLWSVAQYFEPHFSR---------------  107 (308)
Q Consensus        49 ~n~~lLelAkldFn~~Q~~h~~El~~i~rWw------~~l~f~R~r~ve~yf~~~~~~~eP~~s~---------------  107 (308)
                      +|++||||||||||+||++||+||++|+|||      ++|||+|||+||||||++|++|||+||.               
T Consensus         1 ~N~~lLelAKlDFn~~Q~~hq~El~~l~rWwk~~~l~~~l~faRdr~ve~Yfwa~~~~feP~~s~~Ri~~aK~~~l~~ii   80 (328)
T d1n1ba2           1 MNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQHGYQRKMAATIIVLATVI   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhCCcccCCchHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHhh
Confidence            5999999999999999999999999999999      6799999999999999999999999998               


Q ss_pred             cchhcccCCHHHHHHHHHHHHhcchhhhccCCCchHHHHHHHHhHHHHHHHHHHhcCCCchHHhHHHHHHHHHHHHHHHH
Q 047694          108 DDAYDAYGTLGELRSFTDAVERWDINCISELPEYMKPLFSALSNPFDELNNELAEEGRSYSVSFTKDMMKGVARAYFVEA  187 (308)
Q Consensus       108 DD~yD~~gt~eEl~~~t~aierWd~~~~~~lp~~mk~~f~al~~~~~ei~~~~~~~g~~~~~~~lk~~~~~~~~a~l~EA  187 (308)
                      ||+||+|||+||++.||+||+|||.++++.||+|||+||.+++++++|++.++.+.||.++.+|++++|+++++||++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~g~~~~~~lk~~w~~l~~ayl~Ea  160 (328)
T d1n1ba2          81 DDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEA  160 (328)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHhcccCCHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988887667899999999999999999999


Q ss_pred             HHHhcCCCCCHHHHHhhhhhhcccc--------------cchhhhHhhhcchHHHHHHHHHHHHhhhhH----HhhcCCc
Q 047694          188 QWFHEGYMPPFDERMSNAIVTGTYI--------------AGIDAYEWLRSQPKIMTASFTLSRLIADLA----EQERGHV  249 (308)
Q Consensus       188 kW~~~g~vPs~eEYl~~~~~S~g~~--------------l~~e~~e~~~~~p~i~~~~~~i~RL~NDi~----E~~~G~~  249 (308)
                      ||+++||+||+||||+||.+|+|++              .++++++|+.++|++++++++|+||+|||+    |++||++
T Consensus       161 kW~~~g~vPt~eEYl~~~~vS~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~RL~nDi~~~~~E~~rg~~  240 (328)
T d1n1ba2         161 KWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDV  240 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CC
T ss_pred             HHHhcCCCCCHHHHHhhceehhhHHHHHHHHHHhCCCccchHHHHHHHhccHHHHHHHHHHHHHHhhhhhHHHHHhcCCc
Confidence            9999999999999999999999987              345679999999999999999999999999    9999999


Q ss_pred             chhHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhcc
Q 047694          250 ASVVESYMKEYGTSGEETAEEFKKMIADGWKDINEECMRPTIVPNFQCDSLMLLLTL  306 (308)
Q Consensus       250 an~V~cyMke~g~s~EeA~~~i~~lie~~wk~ln~~~l~~~~~p~~~~~~~~n~~~~  306 (308)
                      +|+|+|||+|||+|+|+|+++++++|+++||+||+++++++++|++|+++++|+||+
T Consensus       241 ~s~v~cymke~~~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~vp~~~~~~~ln~aR~  297 (328)
T d1n1ba2         241 PKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRV  297 (328)
T ss_dssp             CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHH
T ss_pred             chHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999997
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure