Citrus Sinensis ID: 047726

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------1200------1210------1220------1230------1240------1250------1260------1270------1280------1290------130
MEASDSSRSPLGIDLNEIPSGSTSSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSKLWPLGRKKRILDMNASPPSDVDADATDDVLDFRKHSPGDNSFGGNAFVAPVTSSKFLHAGSGFGFQKASAITTNTGRKGFEANKQSTDRSFQEVELRFPLGKCSRSFTPAIRFPSQNPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLTSSYNSLDTRVKTEESPLHDRVPVCKKRKPTKFPFANGFAENKGFISLNNIKFSSYNQHMGNFNSRSNSMVEIIESGGAENDCAGFLQNYDGLPVQFEDFFILSLGHVDGRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGSTILFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKMKGGVGSAEEGLDGSFGRSKKRRLVEDHDHWPPPGNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWIDGCSSEKCEKKLQGTEPVSLHQCDIVGGKILSASDESHQAVSRENPHAFINLENGAAREAAQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAALVDPNFDSGESKPRRGRKKDADNSIPHKRGKLNMLPINELTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEEVSDASGTCEKNIVNDGTLPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNPPDWARKILEHSISKEVYKGNASGPTKKAVVSVLADVKERLPQNSEKGCKKKTVISISSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEINDILVQTSEIPKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMVQGASEHSQVGGQHKGKK
ccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccEEcHHHHcccccccccccccccEEcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccEEEEEEEcccccEEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccEEEEEccccccccccccccEEEEcccEEEEEccccccEEEEEEEcccccccEEEEEEEEccccccccccEEEEccccccccccccccccccccccccccccccEEEEEcccccccccHHHHccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccHHHHccccccccEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccccccHHHHHHccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHccccccccccEEEcEEEHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEccccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHccHHHHHHHHHHcccHHHHccccccccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccccccccccccHHcHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccEEcccccccccccccccccccccccccHccccEEEEcccccccEEEEccccccccccccccccHHcHHHHHHHHHHHcccccccccccccHEEEEcccccccccccccccccHHHHHHccccccccccccccccEcccHHccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEEcccccEEccHHHHHHHHccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEccccccccccccccEEEEcccEccccccccccEEEEEEccccccccEEEEEEccccccccccccEEEEcccccEEEcccccccccccccccccccccHHHHHHcccccccccccHHcccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccccccccccccHHHHHcccccccccccEEccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccccccEEEEEcccccccccEEcccEEEEEEcccccccHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccccccccccHcHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccccccEcccccccHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHccccccccHHHHHHHHHHHcccccccccccccccEcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHcHHHHccccccccccccccEEEcccccccccHHHHHHHHcccccccccEEEEccccccccEEEcccccccccccccccccHEEcccccHHHccHHHHHHHHcccc
measdssrsplgidlneipsgstsssettslcgacgvaaeaegdvvvcdacergfhlECAGIlmcchqqqqqqpyhhnlLEWVCAdcvkngaksklwplgrkkrildmnasppsdvdadatddvldfrkhspgdnsfggnafvapvtsskflhagsgfgfqkasaittntgrkgfeankqstdrSFQEVElrfplgkcsrsftpairfpsqnpSEILLQALREFISERhgvleegwsvelrhstnsyELYAvycapdgrtfdsmSEVACYLGLTssynsldtrvkteesplhdrvpvckkrkptkfpfangfaenkgfislnnikfssynqhmgnfnsrsNSMVEIIESggaendcagflqnydglpvqfeDFFILSlghvdgrpsyhnvnviypvgytscwhdkitgsLFICevldggdsgpvfkvtrcscsalpipdgstilfrpnfvqcsgrdheangdftsyskdydsdvniqmilsdpclpvdndiltclgscsnkscdddigeisveDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSrefanwdmvdEKEKMRFTslnkfcgssvsvsipsefrgdneLDMLADVLLKWLDQDRFGLEAEFVQEVIEqlpgvkdcsqyeflidrscYLSFLTVGNGSLMvkmkggvgsaeegldgsfgrskkrrlvedhdhwpppgnalcsrlppqivgDFFQVCQFLWRFHEvlglkesfslEELEEElinpwidgcssekcekklqgtepvslhqcdivggkilsasdeshqavsrenphafinlengaAREAAQDEMgfvsysrcsgvVLTKAHSSLLEVLIAELQSKVAalvdpnfdsgeskprrgrkkdadnsiphkrgklnmlpineltwPELARRYILAFLSmdgildspeitaresGRVFRClqgdggvlcgsltGVAGMEADALLLAEATKKIFGslnrendvLTIEEEvsdasgtceknivndgtlpEWAKMlepvrklptnvgtRIRKCVYEAlernppdwARKILEHSISKevykgnasgptKKAVVSVLADVKerlpqnsekgckkkTVISISSIIMKQCRIVLRQAAAADDEKVFCNLlgrkplsstdnddegflgspamvsrpldfrtIDLRLAvgaydgshdSFLQDVREFWNNVrtafgdqpdfVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEINDILVqtseipkapwdegickvcgvdkdddsvllcdtcdaeyhtyclepplvripegnwycpscvvrnsmvqgasehsqvggqhkgkk
measdssrsplgidlneipsgstsssETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKsklwplgrkkrildmnasppsdvdaDATDDVLDFRKHSPGDNSFGGNAFVAPVTSSKFLHAGSGFGFQKASAITTNTGRKGFeankqstdrsfQEVELRFPLGKCSRSftpairfpsqnPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLTSSYNSLDTRVKteesplhdrvpvckkrkptkFPFANGFAENKGFISLNNIKFSSYNQHMGNFNSRSNSMVEIIESGGAENDCAGFLQNYDGLPVQFEDFFILSLGHVDGRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSalpipdgstiLFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENsrefanwdmvDEKEKMRFTSlnkfcgssvsVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKMKGGvgsaeegldgsfgrSKKRRLVEDHDHWPPPGNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWIDGCSSEKCEKKLQGTEPVSLHQCDIVGGKILSASDESHQAVSRENPHAFINLENGAAREAAQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVaalvdpnfdsgeskprrgrkkdadnsiphkrgklnmlpineLTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEevsdasgtceknivndgtlpeWAKMlepvrklptnvgtrIRKCVYealernppdwaRKILEHSISKevykgnasgptkKAVVSVLADVkerlpqnsekgckkktvisISSIIMKQCRIVLRQAAAADDEKVFCNLLgrkplsstdnddegflgspamvsrpLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEINDILvqtseipkapwdEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMVQGasehsqvggqhkgkk
MEASDSSRSPLGIDLNEIPsgstsssettsLcgacgvaaeaegdvvvcdaCERGFHLECAGILMCCHqqqqqqPYHHNLLEWVCADCVKNGAKSKLWPLGRKKRILDMNASPPSdvdadatddvldFRKHSPGDNSFGGNAFVAPVTSSKFLHAGSGFGFQKASAITTNTGRKGFEANKQSTDRSFQEVELRFPLGKCSRSFTPAIRFPSQNPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLTSSYNSLDTRVKTEESPLHDRVPVCKKRKPTKFPFANGFAENKGFISLNNIKFSSYNQHMGNFNSRSNSMVEIIESGGAENDCAGFLQNYDGLPVQFEDFFILSLGHVDGRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGSTILFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKMKGGVGSAEEGLDGSFGRSKKRRLVEDHDHWPPPGNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSleeleeelINPWIDGCSSEKCEKKLQGTEPVSLHQCDIVGGKILSASDESHQAVSRENPHAFINLENGAAREAAQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAALVDPNFDSGESKPRRGRKKDADNSIPHKRGKLNMLPINELTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEEVSDASGTCEKNIVNDGTLPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNPPDWARKILEHSISKEVYKGNASGPTKKAVVSVLADVKERLPQNSEKGCKKKTVisissiiMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEINDILVQTSEIPKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMVQGASEHSQVGGQHKGKK
******************************LCGACGVAAEAEGDVVVCDACERGFHLECAGILMCC**********HNLLEWVCADCVKNGAKSKLWPLGRKKRI*********************************GNAFVAPVTSSKFLHAGSGFGFQKA**************************ELRFPLGKCSRSFTPAIRFP***PSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLTSSYNSLD*************VPVCKKRKPTKFPFANGFAENKGFISLNNIKFSSYNQHMGNF******MVEIIESGGAENDCAGFLQNYDGLPVQFEDFFILSLGHVDGRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGSTILFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKMK********************************GNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWIDGCSSEKCEKKLQGTEPVSLHQCDIVGGKIL******************I*************EMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAALV*****************************LNMLPINELTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEEVSDASGTCEKNIVNDGTLPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNPPDWARKILEHSISKEVY**********AVVSVLAD************CKKKTVISISSIIMKQCRIVLRQAAAADDEKVFCNLLGR*****************AMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEINDILVQTSEIPKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS*******************
************IDL*******************CGVAAEAEGDVVVCDACERGFHLECAGILM**************LLEWVCADCVKNGA*SKLWPLGRKKRILDMNAS*****************KHSPGDNSFGGNAFVAPVTSSKFLHAGSGFGFQ****************NKQSTDRSFQEVELRFPLG***************NPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLTSSYNSL********************************************************************************QNYDGLPVQFEDFFILSLGHVDGRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGSTILFRPNF**********************SDVNIQMILSDPCLPVDNDILTCLGS****SCDDDIGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNG****************************************NALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWIDGCSSEKCE********************************************************GFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAA**************************HKRGKLNMLPINELTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNR*******************************AKMLE***********RIRKCVYEALER*****************************************************************CRIVLRQAAAADDEKVFCNLLGRKPLSST*****GFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRT*************************EIVTLLQK*****************************KAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSC************************
*********PLGIDLNEI*************CGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSKLWPLGRKKRILDMNASPPSDVDADATDDVLDFRKHSPGDNSFGGNAFVAPVTSSKFLHAGSGFGFQKASAITTNTGRKGFE***********EVELRFPLGKCSRSFTPAIRFPSQNPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLTSSYNSLDTRVKTEESPLHDRVPVCKKRKPTKFPFANGFAENKGFISLNNIKFSSYNQHMGNFNSRSNSMVEIIESGGAENDCAGFLQNYDGLPVQFEDFFILSLGHVDGRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGSTILFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKMKGGVGSAEEGLDGSFGRSKKRRLVEDHDHWPPPGNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWIDGCSSEKCEKKLQGTEPVSLHQCDIVGGKILSA*********RENPHAFINLENGAAREAAQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAALVDPNFD***************NSIPHKRGKLNMLPINELTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEEVSDASGTCEKNIVNDGTLPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNPPDWARKILEHSISKEVYKGNASGPTKKAVVSVLADVKERLPQNSEKGCKKKTVISISSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEINDILVQTSEIPKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMVQ****************
**********L*I****IP*********************AEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSKLWPLGRKKRILDMNASPPS******TDDVLDFRKHSPGDNSFGGNAFVAPVTSSKFLHAGSGFGFQKASAITTNTGRKGFEANKQSTDRSFQEVELRFPLGKCSRSFTPAIRFPSQNPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLTSSYNSLDTRVKTEESPLHD******************************I**********************************FLQNYDGLPVQFEDFFILSLGHVDGRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGSTILFRPNFVQCSG***************YDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKMKG************************HDHWPPPGNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWIDGCSSEKC*****GTEPVSLHQCDIVGGK***ASDESHQAVSRENPHAFINLENGAAREAAQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAALVDPNF*****************SIPH*RGKLNMLPINELTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEEVSDASGTCEKNIVNDGTLPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNPPDWARKILEHSISKEVYKGNASGPTKKAVVSVLADVKERLPQNSEKGCKKKTVISISSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAK***********INDILVQTSEIPKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMVQGASEHSQVGGQH****
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MEASDSSRSPLGIDLNEIPSGSTSSSETTSLCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKNGAKSKLWPLGRKKRILDMNASPPSDVDADATDDVLDFRKHSPGDNSFGGNAFVAPVTSSKFLHAGSGFGFQKASAITTNTGRKGFEANKQSTDRSFQEVELRFPLGKCSRSFTPAIRFPSQNPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACYLGLTSSYNSLDTRVKTEESPLHDRVPVCKKRKPTKFPFANGFAENKGFISLNNIKFSSYNQHMGNFNSRSNSMVEIIESGGAENDCAGFLQNYDGLPVQFEDFFILSLGHVDGRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGSTILFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKMKGGVGSAEEGLDGSFGRSKKRRLVEDHDHWPPPGNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWIDGCSSEKCEKKLQGTEPVSLHQCDIVGGKILSASDESHQAVSRENPHAFINLENGAAREAAQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAALVDPNFDSGESKPRRGRKKDADNSIPHKRGKLNMLPINELTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEEVSDASGTCEKNIVNDGTLPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNPPDWARKILEHSISKEVYKGNASGPTKKAVVSVLADVKERLPQNSEKGCKKKTVISISSIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEINDILVQTSEIPKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSMVQGASEHSQVGGQHKGKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query1297 2.2.26 [Sep-21-2011]
Q9SGH2 2176 Methyl-CpG-binding domain yes no 0.976 0.582 0.508 0.0
Q9HDV4 1513 Lid2 complex component li yes no 0.120 0.103 0.318 3e-12
Q22516 1787 Chromodomain-helicase-DNA yes no 0.046 0.033 0.461 1e-11
Q5F3R2 1522 Lysine-specific demethyla yes no 0.062 0.053 0.395 3e-11
Q6IQX0 1503 Lysine-specific demethyla no no 0.038 0.033 0.519 5e-11
Q9VMJ7 1838 Lysine-specific demethyla yes no 0.040 0.028 0.528 7e-11
Q96T23 1441 Remodeling and spacing fa yes no 0.037 0.034 0.530 1e-10
Q6PDK2 5588 Histone-lysine N-methyltr no no 0.036 0.008 0.553 1e-10
O14686 5537 Histone-lysine N-methyltr no no 0.036 0.008 0.553 1e-10
Q80Y84 1544 Lysine-specific demethyla no no 0.040 0.033 0.5 2e-10
>sp|Q9SGH2|MBD9_ARATH Methyl-CpG-binding domain-containing protein 9 OS=Arabidopsis thaliana GN=MBD9 PE=2 SV=1 Back     alignment and function desciption
 Score = 1282 bits (3318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 694/1364 (50%), Positives = 885/1364 (64%), Gaps = 97/1364 (7%)

Query: 5    DSSRSPLGIDLNEIPSGSTSSSETTS---------------------------------- 30
            + SRS LGIDLNEIP+G+T     T+                                  
Sbjct: 21   EESRSFLGIDLNEIPTGATLGGGCTAGQDDDGEYEPVEVVRSIHDNPDPAPGAPAEVPEP 80

Query: 31   ----LCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCAD 86
                 CGACG     E  VVVCDACERGFH+ C       +   +  P      +W+C+D
Sbjct: 81   DRDASCGACGRPESIEL-VVVCDACERGFHMSCV------NDGVEAAPS----ADWMCSD 129

Query: 87   CVKNGAKSKLWPLGRK-KRILDMNASPPSDVDADATDDVLDFRKHSPGDNSFGGNAFVAP 145
            C   G +SKLWPLG K K ILDMNASPPSD +    ++  D RKH    +S  GN+F   
Sbjct: 130  CRTGGERSKLWPLGVKSKLILDMNASPPSDAEGYGAEETSDSRKHMLASSSCIGNSFDYA 189

Query: 146  VTSSKFLHAGSGFGFQKASAITTNTGRKGFEANKQSTDRSFQEVELRFPLGKCSRSFTPA 205
            +  S F   G G    +AS + +   +   +A           +   FPL   + S    
Sbjct: 190  MMHSSFSSLGRGHASLEASGLMSRNTKMSMDA------LGSHNLGFGFPLNLNNSSL--P 241

Query: 206  IRFPSQNPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMS 265
            +RFPS +PSE+ LQ LR FISERHGVLE+GW VE R   N Y+L AVYCAP+G+TF S+ 
Sbjct: 242  MRFPSLDPSELFLQNLRHFISERHGVLEDGWRVEFRQPLNGYQLCAVYCAPNGKTFSSIQ 301

Query: 266  EVACYLGLT--SSYNSLDTRVKTEESPLHDRVPVCKKRKPTKFPFANGFAENKGF-ISLN 322
            EVACYLGL    +Y+ +D  ++ E S L +R+   K+RK +++P  NGF E KG  +S  
Sbjct: 302  EVACYLGLAINGNYSCMDAEIRNENSLLQERLHTPKRRKTSRWP-NNGFPEQKGSSVSAQ 360

Query: 323  NIKFSSYNQHMGNFNSRSNSMVEIIESGGAENDCAGFLQNYDGLPVQFEDFFILSLGHVD 382
              +F    Q M  F  +S +  +   S  + N+  G  +  +G P+QFEDFF+LSLG +D
Sbjct: 361  LRRFPFNGQTMSPFAVKSGTHFQAGGSLSSGNNGCGCEEAKNGCPMQFEDFFVLSLGRID 420

Query: 383  GRPSYHNVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGST 442
             R SYHNVNVIYP+GY SCWHDKITGSLF CEV DG +SGP+FKVTR  CS   IP GST
Sbjct: 421  IRQSYHNVNVIYPIGYKSCWHDKITGSLFTCEVSDG-NSGPIFKVTRSPCSKSFIPAGST 479

Query: 443  ILFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCS--- 499
            +   P   +   ++ +   +    +++ D D +++++LS+ C P+ +DIL+CL   S   
Sbjct: 480  VFSCPKIDEMVEQNSDKLSNRRDSTQERDDDASVEILLSEHCPPLGDDILSCLREKSFSK 539

Query: 500  ------------------NKSCDDD----IGEISVEDRSLSSAWRRLSQKFVDACFEICK 537
                              N S D D    IG+I VE+ SLS AW+++SQK VDAC  + K
Sbjct: 540  TVNSLRSEVDSSRVDFDKNLSYDQDHGVEIGDIVVEEDSLSDAWKKVSQKLVDACSIVLK 599

Query: 538  QKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDML 597
            QKG L F CKH++      NWD ++EK+ +   SL+KFC S    S+    +  +E   +
Sbjct: 600  QKGTLNFLCKHVDRETSEINWDTMNEKDNV-ILSLSKFCCSLAPCSVTCGEKDKSEFAAV 658

Query: 598  ADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKM 657
             D L +WLDQ+RFGL+A+FVQE+IE +PG + C+ Y  L  RS     +TV  G+L+VK 
Sbjct: 659  VDALSRWLDQNRFGLDADFVQEMIEHMPGAESCTNYRTLKSRSSSSVPITVAEGALVVKP 718

Query: 658  KGGVGSAEEGLDGSFGRSKKRRLVEDH---DHWPPPGNALCSRLPPQIVGDFFQVCQFLW 714
            KGG    +E       ++KK +L   H   +  PPPG  +C RLPP +VGDF QV +  W
Sbjct: 719  KGGENVKDEVFGEISRKAKKPKLNGGHGVRNLHPPPGRPMCLRLPPGLVGDFLQVSEVFW 778

Query: 715  RFHEVLGLKESFSLEELEEELINPWIDGCSSEKCEKKLQGTEPVSLHQCDIVGGKILSAS 774
            RFHE+LG +E+FS E LE+ELINP  DG   +K  K  + +E ++    D    K+ S  
Sbjct: 779  RFHEILGFEEAFSPENLEQELINPVFDGLFLDKPGKDDKRSE-INFTDKDSTATKLFSLF 837

Query: 775  DESHQAVSRENPHAFINLENGAAREAAQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQ 834
            DES Q    +N  A   L+   A +++  ++   S   C G +LT+AH SLL+VLI ELQ
Sbjct: 838  DESRQPFPAKNTSAS-ELKEKKAGDSSDFKISDSSRGSCVGALLTRAHISLLQVLICELQ 896

Query: 835  SKVAALVDPNFDSGESKPRRGRKKDADNSIPHKRGKLNMLPINELTWPELARRYILAFLS 894
            SKVAA VDPNFDSGES+ RRGRKKD D+++  KR KL+MLP+NE TWPELARRYIL+ LS
Sbjct: 897  SKVAAFVDPNFDSGESRSRRGRKKD-DSTLSAKRNKLHMLPVNEFTWPELARRYILSLLS 955

Query: 895  MDGILDSPEITARESGRVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRE 954
            MDG L+S EI ARESG+VFRCLQGDGG+LCGSLTGVAGMEAD++LLAEA KKI GSL  E
Sbjct: 956  MDGNLESAEIAARESGKVFRCLQGDGGLLCGSLTGVAGMEADSMLLAEAIKKISGSLTSE 1015

Query: 955  NDVLTIEEEVSDASGTCEKNIVNDGTLPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNP 1014
            NDVL++E++ SD     E N  + G +PEWA++LEPV+KLPTNVGTRIRKCVYEALERNP
Sbjct: 1016 NDVLSVEDDDSDGLDATETNTCS-GDIPEWAQVLEPVKKLPTNVGTRIRKCVYEALERNP 1074

Query: 1015 PDWARKILEHSISKEVYKGNASGPTKKAVVSVLADVKE-RLPQNSEKGCKKKTVISISSI 1073
            P+WA+KILEHSISKE+YKGNASGPTKKAV+S+LAD++   L Q S KG KK+T IS+S +
Sbjct: 1075 PEWAKKILEHSISKEIYKGNASGPTKKAVLSLLADIRGGDLVQRSIKGTKKRTYISVSDV 1134

Query: 1074 IMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRL 1133
            IMK+CR VLR  AAAD++KV C LLGRK L+S+DNDD+G LGSPAMVSRPLDFRTIDLRL
Sbjct: 1135 IMKKCRAVLRGVAAADEDKVLCTLLGRKLLNSSDNDDDGLLGSPAMVSRPLDFRTIDLRL 1194

Query: 1134 AVGAYDGSHDSFLQDVREFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLV 1193
            A GAYDGS ++FL+DV E W+++R  + DQPD VDL   LS  F+SLYE E+V L+QKL 
Sbjct: 1195 AAGAYDGSTEAFLEDVLELWSSIRVMYADQPDCVDLVATLSEKFKSLYEAEVVPLVQKLK 1254

Query: 1194 GYAKLESLSEETTKEINDILVQTSEIPKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHT 1253
             Y KLE LS E  KEI DI+V  +++PKAPWDEG+CKVCGVDKDDDSVLLCDTCDAEYHT
Sbjct: 1255 DYRKLECLSAEMKKEIKDIVVSVNKLPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHT 1314

Query: 1254 YCLEPPLVRIPEGNWYCPSCVVRNSMVQGASEHSQVGGQHKGKK 1297
            YCL PPL+RIP+GNWYCPSCV+   M Q A E  ++  + KG+K
Sbjct: 1315 YCLNPPLIRIPDGNWYCPSCVIAKRMAQEALESYKLVRRRKGRK 1358
Probable transcriptional regulator that acts as a histone acetyltranferase. Mediates the acetylation of histone H3 and H4 of target loci (e.g. FLC). Involved in an auxin-independent regulation of shoot branching and flowering time.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 8
>sp|Q9HDV4|LID2_SCHPO Lid2 complex component lid2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lid2 PE=1 SV=1 Back     alignment and function description
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2 Back     alignment and function description
>sp|Q5F3R2|KDM5B_CHICK Lysine-specific demethylase 5B OS=Gallus gallus GN=KDM5B PE=2 SV=1 Back     alignment and function description
>sp|Q6IQX0|KD5BB_DANRE Lysine-specific demethylase 5B-B OS=Danio rerio GN=kdm5bb PE=2 SV=2 Back     alignment and function description
>sp|Q9VMJ7|KDM5_DROME Lysine-specific demethylase lid OS=Drosophila melanogaster GN=lid PE=1 SV=1 Back     alignment and function description
>sp|Q96T23|RSF1_HUMAN Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2 Back     alignment and function description
>sp|Q6PDK2|MLL2_MOUSE Histone-lysine N-methyltransferase MLL2 OS=Mus musculus GN=Mll2 PE=1 SV=2 Back     alignment and function description
>sp|O14686|MLL2_HUMAN Histone-lysine N-methyltransferase MLL2 OS=Homo sapiens GN=MLL2 PE=1 SV=2 Back     alignment and function description
>sp|Q80Y84|KDM5B_MOUSE Lysine-specific demethylase 5B OS=Mus musculus GN=Kdm5b PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1297
359488845 2164 PREDICTED: methyl-CpG-binding domain-con 0.951 0.570 0.577 0.0
255552612 2145 DNA binding protein, putative [Ricinus c 0.921 0.557 0.571 0.0
297832794 2183 methyl-CpG-binding domain 9 [Arabidopsis 0.977 0.580 0.509 0.0
15232121 2176 methyl-CPG-binding domain 9 [Arabidopsis 0.976 0.582 0.508 0.0
449446853 2131 PREDICTED: methyl-CpG-binding domain-con 0.929 0.565 0.519 0.0
296087685 1907 unnamed protein product [Vitis vinifera] 0.703 0.478 0.613 0.0
296086550 1789 unnamed protein product [Vitis vinifera] 0.712 0.516 0.537 0.0
359473443 2060 PREDICTED: methyl-CpG-binding domain-con 0.723 0.455 0.510 0.0
255568758 1794 DNA binding protein, putative [Ricinus c 0.682 0.493 0.511 0.0
222622353 1949 hypothetical protein OsJ_05715 [Oryza sa 0.777 0.517 0.451 0.0
>gi|359488845|ref|XP_002274643.2| PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1439 bits (3726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 772/1337 (57%), Positives = 930/1337 (69%), Gaps = 103/1337 (7%)

Query: 2    EASDSSRSPLGIDLNEIPSGSTSSSETT-------------------------------S 30
            ++   +RS LGIDLNEIPS S   +                                  S
Sbjct: 12   DSKSETRSVLGIDLNEIPSSSFVEASHDVPDAYAVVRSFHGELSPAAGAAAGLPGEGWGS 71

Query: 31   LCGACGVAAEAEGDVVVCDACERGFHLECAGILMCCHQQQQQQPYHHNLLEWVCADCVKN 90
            +C  CG A E    V+VCD CERGFHL C G  M   Q          L EWVC +CV++
Sbjct: 72   VCAVCG-APEVGAQVLVCDGCERGFHLVCVG--MPGRQAGM-------LEEWVCGECVRS 121

Query: 91   GAKSKLWPLGRKKRILDMNASPPSDVDADATDDVLDFRKHSPGDNSFGGNAFVAPVTSSK 150
            G  SK WPLG K+R+LD+NASPPS+ + +   ++ D RKHSPGDNSFGGN+F AP T S 
Sbjct: 122  GVGSKRWPLGSKRRLLDINASPPSEGEGE---ELPDSRKHSPGDNSFGGNSFGAPETYSN 178

Query: 151  FLHAGSGFGFQKASAITTNTGRKGFEANKQSTDRSFQEVELRFPLGKCSRSFTPAIRFPS 210
            F  AG+GFGF KAS I T+  + G E     T+RSF+EV+  FPLG+   S   A R P 
Sbjct: 179  FRCAGNGFGFPKASGILTHAVKLGLEDILHHTNRSFEEVDSGFPLGRLRSSNNTACRLPP 238

Query: 211  QNPSEILLQALREFISERHGVLEEGWSVELRHSTNSYELYAVYCAPDGRTFDSMSEVACY 270
            Q PSE+LLQAL+EFISERHGVLEEGW VEL+ S  + EL  V+CAPDGR F+SMSEVA Y
Sbjct: 239  QEPSEMLLQALKEFISERHGVLEEGWRVELKQSVRAGELCPVFCAPDGRIFESMSEVAVY 298

Query: 271  LGLTSSYNSLDTRVKTEESP-LHDRVPVCKKRKPTKFPFANGFAENKGFISLNNIK-FSS 328
            LGLTS+ NS+DT ++++ S  L  R  + K+RK T+   AN  AENK  +  +  K  SS
Sbjct: 299  LGLTSNCNSVDTEIRSDGSASLKKRSHLSKRRKSTRLSIANSSAENKDALLTDFCKDISS 358

Query: 329  YNQHMGNFNSRSNSMVEIIESGGAENDCAGFLQNYDGLPVQFEDFFILSLGHVDGRPSYH 388
              Q M    S   + V++ E+   EN   G  Q+ +GLPVQFEDFF+LSLG VD RPSYH
Sbjct: 359  DVQSMELCASNLGNSVKVTEAAPEENGGTGLQQHNNGLPVQFEDFFVLSLGEVDVRPSYH 418

Query: 389  NVNVIYPVGYTSCWHDKITGSLFICEVLDGGDSGPVFKVTRCSCSALPIPDGSTILFRPN 448
            +VN ++PVGY SCWHDK+TGSLF+C+V DGGDSGP+FKV RC+CSA+P+P+GST+L RPN
Sbjct: 419  DVNQLWPVGYKSCWHDKLTGSLFMCDVSDGGDSGPIFKVKRCACSAIPLPNGSTVLCRPN 478

Query: 449  FVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSC-DDDI 507
              Q +G+D E + D  S S DYD D ++Q +L+DP  P++NDIL+C+ S SN SC    +
Sbjct: 479  LGQSNGQDKEKSNDMISLSMDYDEDGSLQTLLADPSPPMENDILSCIRSSSNGSCCVQTL 538

Query: 508  GEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKM 567
              + +ED SL                                                + 
Sbjct: 539  NSLLLEDNSL-----------------------------------------------HER 551

Query: 568  RFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAEFVQEVIEQLPGV 627
             +TSL+KFC S  SV +PS  +G+NEL    +VL KWLDQDRFGL+ EFVQE++EQLPGV
Sbjct: 552  SYTSLDKFCSSPGSVCMPSVIQGENELQTQCEVLAKWLDQDRFGLDVEFVQEMLEQLPGV 611

Query: 628  KDCSQYEFLIDRSCYLSFLTVGNGSLMVKMKGGVGS-AEEGLDGSFGRSKKRR--LVED- 683
              CSQY+ L +RS + + LTVGNG L+ + + GV S  EE LD  FG SK+ R   V D 
Sbjct: 612  CACSQYKLLNNRSYHSTLLTVGNGLLLAETENGVQSKGEEALDCLFGGSKRARKYTVGDP 671

Query: 684  --HDHWPPPGNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSLEELEEELINPWID 741
               D  PPPGN L SRLPP +VGD  QV + LWRF+E+LGLKE FS+EELEEELI PW D
Sbjct: 672  LMDDFCPPPGNPLGSRLPPDLVGDVIQVWESLWRFYEILGLKEPFSIEELEEELICPWSD 731

Query: 742  GCSS-EKCEKKLQGTEPVSLHQCDIVGGKILSASDESHQAVSRENPHAFINLENGAAREA 800
              +  EK   + Q    ++  +     G I S+S +S   VS  NPHAFI +E G  +EA
Sbjct: 732  DLNLLEKFGTETQENRDITPTRPSGASGHIPSSSTDSGPEVSTGNPHAFIQMETGQKKEA 791

Query: 801  AQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAALVDPNFDSGESKPRRGRKKDA 860
            AQ ++  V+YSRCSGV LTKAH+SLL+VL++ELQ KVAALVDPNFDSGESK RRGRKKDA
Sbjct: 792  AQAKLASVTYSRCSGVTLTKAHNSLLKVLVSELQFKVAALVDPNFDSGESKSRRGRKKDA 851

Query: 861  DNSIPHKRGKLNMLPINELTWPELARRYILAFLSMDGILDSPEITARESGRVFRCLQGDG 920
            DN+IP K+ KLNMLPINELTWPELARRYIL  LSMDG LDS EIT RESG+VFRCLQGDG
Sbjct: 852  DNAIPTKKTKLNMLPINELTWPELARRYILCVLSMDGNLDSAEITIRESGKVFRCLQGDG 911

Query: 921  GVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEEVSDASGTCEKNIVNDGT 980
            GVLC SLTGVAGM+ADALL AEA K+IFGSLNRE+D+LTIEE+ SDA+G  ++ +VNDG 
Sbjct: 912  GVLCDSLTGVAGMQADALLFAEARKQIFGSLNREDDILTIEEKGSDATGDHDRIVVNDGN 971

Query: 981  LPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNPPDWARKILEHSISKEVYKGNASGPTK 1040
            +PEWA++LEPVRKLPTNVGTRIRKC+YEALE++PP+WA+KIL HSISKEVYKGNASGPTK
Sbjct: 972  IPEWAQVLEPVRKLPTNVGTRIRKCIYEALEKDPPEWAKKILAHSISKEVYKGNASGPTK 1031

Query: 1041 KAVVSVLADVK-ERLPQNSEKGCKKKTVISISSIIMKQCRIVLRQAAAADDEKVFCNLLG 1099
            KAV+SVL  V  E L    +K  K+K VISI  IIMKQCRI LR+ AAADD KVFC LLG
Sbjct: 1032 KAVLSVLGIVHDEGLKSKPDKERKRKRVISIPDIIMKQCRITLRRGAAADDAKVFCTLLG 1091

Query: 1100 RKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVREFWNNVRTA 1159
             K ++S DNDDEG LG+PAMVSRPLDFRTIDLRLAVGAY GS ++FL+DVRE WNN+ TA
Sbjct: 1092 SKLINSIDNDDEGLLGTPAMVSRPLDFRTIDLRLAVGAYGGSWETFLEDVRELWNNIHTA 1151

Query: 1160 FGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEINDILVQTSEI 1219
            + DQPD V+LA  LS+NFES++E E++ L+QK   YAK E LS ET KEI+D LV  SEI
Sbjct: 1152 YADQPDSVELARTLSQNFESMFEKEVLPLVQKFTEYAKSECLSAETEKEIDDFLVSASEI 1211

Query: 1220 PKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNSM 1279
            PKAPWDEG+CKVCG+DKDDDSVLLCD CDAEYHTYCL PPL RIPEGNWYCPSCV   SM
Sbjct: 1212 PKAPWDEGVCKVCGIDKDDDSVLLCDMCDAEYHTYCLNPPLARIPEGNWYCPSCVAGISM 1271

Query: 1280 VQGASEHSQVGGQHKGK 1296
            V   SEH+ V  Q +GK
Sbjct: 1272 VD-VSEHTHVIAQRQGK 1287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255552612|ref|XP_002517349.1| DNA binding protein, putative [Ricinus communis] gi|223543360|gb|EEF44891.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297832794|ref|XP_002884279.1| methyl-CpG-binding domain 9 [Arabidopsis lyrata subsp. lyrata] gi|297330119|gb|EFH60538.1| methyl-CpG-binding domain 9 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15232121|ref|NP_186795.1| methyl-CPG-binding domain 9 [Arabidopsis thaliana] gi|75337201|sp|Q9SGH2.1|MBD9_ARATH RecName: Full=Methyl-CpG-binding domain-containing protein 9; Short=AtMBD9; Short=MBD09; AltName: Full=Histone acetyl tranferase MBD9; AltName: Full=Methyl-CpG-binding protein MBD9 gi|6692266|gb|AAF24616.1|AC010870_9 unknown protein [Arabidopsis thaliana] gi|332640148|gb|AEE73669.1| methyl-CPG-binding domain 9 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449446853|ref|XP_004141185.1| PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|296087685|emb|CBI34941.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086550|emb|CBI32139.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473443|ref|XP_002264500.2| PREDICTED: methyl-CpG-binding domain-containing protein 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255568758|ref|XP_002525350.1| DNA binding protein, putative [Ricinus communis] gi|223535313|gb|EEF36988.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|222622353|gb|EEE56485.1| hypothetical protein OsJ_05715 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query1297
TAIR|locus:2096672 2176 MBD9 "methyl-CPG-binding domai 0.609 0.363 0.576 0.0
UNIPROTKB|F1NFV8 1522 BAZ1A "Uncharacterized protein 0.056 0.047 0.412 2.7e-11
UNIPROTKB|H7C212228 MLL3 "Histone-lysine N-methylt 0.036 0.206 0.531 1e-10
TAIR|locus:2195945522 AT1G77250 "AT1G77250" [Arabido 0.043 0.107 0.464 1.1e-10
WB|WBGene00000482 1787 chd-3 [Caenorhabditis elegans 0.046 0.033 0.461 8.3e-10
UNIPROTKB|Q22516 1787 chd-3 "Chromodomain-helicase-D 0.046 0.033 0.461 8.3e-10
UNIPROTKB|H0YDG9 276 RSF1 "Remodeling and spacing f 0.034 0.163 0.555 9.7e-10
POMBASE|SPBP19A11.06 1513 lid2 "Lid2 complex subunit, pr 0.120 0.103 0.324 1.8e-09
ZFIN|ZDB-GENE-060810-94 1578 kdm5c "lysine (K)-specific dem 0.038 0.031 0.52 8.4e-09
UNIPROTKB|F1STY8 1344 RSF1 "Uncharacterized protein" 0.037 0.036 0.530 1e-08
TAIR|locus:2096672 MBD9 "methyl-CPG-binding domain 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2330 (825.3 bits), Expect = 0., Sum P(3) = 0.
 Identities = 466/808 (57%), Positives = 577/808 (71%)

Query:   500 NKSCDDD----IGEISVEDRSLSSAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREF 555
             N S D D    IG+I VE+ SLS AW+++SQK VDAC  + KQKG L F CKH++     
Sbjct:   558 NLSYDQDHGVEIGDIVVEEDSLSDAWKKVSQKLVDACSIVLKQKGTLNFLCKHVDRETSE 617

Query:   556 ANWDMVDEKEKMRFTSLNKFCGSSVSVSIPSEFRGDNELDMLADVLLKWLDQDRFGLEAE 615
              NWD ++EK+ +   SL+KFC S    S+    +  +E   + D L +WLDQ+RFGL+A+
Sbjct:   618 INWDTMNEKDNV-ILSLSKFCCSLAPCSVTCGEKDKSEFAAVVDALSRWLDQNRFGLDAD 676

Query:   616 FVQEVIEQLPGVKDCSQYEFLIDRSCYLSFLTVGNGSLMVKMKGGVGSAEEGLDGSFGR- 674
             FVQE+IE +PG + C+ Y  L  RS     +TV  G+L+VK KGG    +E + G   R 
Sbjct:   677 FVQEMIEHMPGAESCTNYRTLKSRSSSSVPITVAEGALVVKPKGGENVKDE-VFGEISRK 735

Query:   675 SKKRRLVEDHD----HWPPPGNALCSRLPPQIVGDFFQVCQFLWRFHEVLGLKESFSXXX 730
             +KK +L   H     H PPPG  +C RLPP +VGDF QV +  WRFHE+LG +E+FS   
Sbjct:   736 AKKPKLNGGHGVRNLH-PPPGRPMCLRLPPGLVGDFLQVSEVFWRFHEILGFEEAFSPEN 794

Query:   731 XXXXXINPWIDGCSSEKCEKKLQGTEPVSLHQCDIVGGKILSASDESHQAVSRENPHAFI 790
                  INP  DG   +K  K  + +E ++    D    K+ S  DES Q    +N  A  
Sbjct:   795 LEQELINPVFDGLFLDKPGKDDKRSE-INFTDKDSTATKLFSLFDESRQPFPAKNTSAS- 852

Query:   791 NLENGAAREAAQDEMGFVSYSRCSGVVLTKAHSSLLEVLIAELQSKVAALVDPNFDSGES 850
              L+   A +++  ++   S   C G +LT+AH SLL+VLI ELQSKVAA VDPNFDSGES
Sbjct:   853 ELKEKKAGDSSDFKISDSSRGSCVGALLTRAHISLLQVLICELQSKVAAFVDPNFDSGES 912

Query:   851 KPRRGRKKDADNSIPHKRGKLNMLPINELTWPELARRYILAFLSMDGILDSPEITARESG 910
             + RRGRKKD D+++  KR KL+MLP+NE TWPELARRYIL+ LSMDG L+S EI ARESG
Sbjct:   913 RSRRGRKKD-DSTLSAKRNKLHMLPVNEFTWPELARRYILSLLSMDGNLESAEIAARESG 971

Query:   911 RVFRCLQGDGGVLCGSLTGVAGMEADALLLAEATKKIFGSLNRENDVLTIEEEVSDASGT 970
             +VFRCLQGDGG+LCGSLTGVAGMEAD++LLAEA KKI GSL  ENDVL++E++ SD    
Sbjct:   972 KVFRCLQGDGGLLCGSLTGVAGMEADSMLLAEAIKKISGSLTSENDVLSVEDDDSDGLDA 1031

Query:   971 CEKNIVNDGTLPEWAKMLEPVRKLPTNVGTRIRKCVYEALERNPPDWARKILEHSISKEV 1030
              E N  + G +PEWA++LEPV+KLPTNVGTRIRKCVYEALERNPP+WA+KILEHSISKE+
Sbjct:  1032 TETNTCS-GDIPEWAQVLEPVKKLPTNVGTRIRKCVYEALERNPPEWAKKILEHSISKEI 1090

Query:  1031 YKGNASGPTKKAVVSVLADVKER-LPQNSEKGCKKKTVXXXXXXXMKQCRIVLRQAAAAD 1089
             YKGNASGPTKKAV+S+LAD++   L Q S KG KK+T        MK+CR VLR  AAAD
Sbjct:  1091 YKGNASGPTKKAVLSLLADIRGGDLVQRSIKGTKKRTYISVSDVIMKKCRAVLRGVAAAD 1150

Query:  1090 DEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDV 1149
             ++KV C LLGRK L+S+DNDD+G LGSPAMVSRPLDFRTIDLRLA GAYDGS ++FL+DV
Sbjct:  1151 EDKVLCTLLGRKLLNSSDNDDDGLLGSPAMVSRPLDFRTIDLRLAAGAYDGSTEAFLEDV 1210

Query:  1150 REFWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVTLLQKLVGYAKLESLSEETTKEI 1209
              E W+++R  + DQPD VDL   LS  F+SLYE E+V L+QKL  Y KLE LS E  KEI
Sbjct:  1211 LELWSSIRVMYADQPDCVDLVATLSEKFKSLYEAEVVPLVQKLKDYRKLECLSAEMKKEI 1270

Query:  1210 NDILVQTSEIPKAPWDEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWY 1269
              DI+V  +++PKAPWDEG+CKVCGVDKDDDSVLLCDTCDAEYHTYCL PPL+RIP+GNWY
Sbjct:  1271 KDIVVSVNKLPKAPWDEGVCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWY 1330

Query:  1270 CPSCVVRNSMVQGASEHSQVGGQHKGKK 1297
             CPSCV+   M Q A E  ++  + KG+K
Sbjct:  1331 CPSCVIAKRMAQEALESYKLVRRRKGRK 1358
GO:0003677 "DNA binding" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IEA;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0008327 "methyl-CpG binding" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP
GO:0010223 "secondary shoot formation" evidence=IMP
GO:0043966 "histone H3 acetylation" evidence=IMP
GO:0043967 "histone H4 acetylation" evidence=IMP
GO:0048573 "photoperiodism, flowering" evidence=IMP
GO:0004402 "histone acetyltransferase activity" evidence=IDA
GO:0016573 "histone acetylation" evidence=IDA
GO:0042393 "histone binding" evidence=IPI
GO:0009506 "plasmodesma" evidence=IDA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
UNIPROTKB|F1NFV8 BAZ1A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|H7C212 MLL3 "Histone-lysine N-methyltransferase MLL3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2195945 AT1G77250 "AT1G77250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00000482 chd-3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q22516 chd-3 "Chromodomain-helicase-DNA-binding protein 3 homolog" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|H0YDG9 RSF1 "Remodeling and spacing factor 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPBP19A11.06 lid2 "Lid2 complex subunit, predicted histone demethylase Lid2" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060810-94 kdm5c "lysine (K)-specific demethylase 5C" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1STY8 RSF1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00020759001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (1750 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1297
pfam0062851 pfam00628, PHD, PHD-finger 2e-12
smart0024947 smart00249, PHD, PHD zinc finger 2e-10
pfam0596454 pfam05964, FYRN, F/Y-rich N-terminus 5e-10
pfam0142975 pfam01429, MBD, Methyl-CpG binding domain 1e-06
smart00297107 smart00297, BROMO, bromo domain 6e-05
cd04718148 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homol 1e-04
cd0436999 cd04369, Bromodomain, Bromodomain 1e-04
pfam0043984 pfam00439, Bromodomain, Bromodomain 0.001
pfam0596584 pfam05965, FYRC, F/Y rich C-terminus 0.001
cd05500103 cd05500, Bromo_BDF1_2_I, Bromodomain 0.002
>gnl|CDD|201356 pfam00628, PHD, PHD-finger Back     alignment and domain information 
 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 27/51 (52%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 1228 ICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVR--IPEGNWYCPSCVVR 1276
             C VCG   DD  +LLCD CD  +H  CL PPL    IPEG WYCP C  +
Sbjct: 1    YCAVCGKVDDDGELLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECKPK 51

PHD folds into an interleaved type of Zn-finger chelating 2 Zn ions in a similar manner to that of the RING and FYVE domains. Several PHD fingers have been identified as binding modules of methylated histone H3. Length = 51
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger Back     alignment and domain information
>gnl|CDD|218830 pfam05964, FYRN, F/Y-rich N-terminus Back     alignment and domain information
>gnl|CDD|216497 pfam01429, MBD, Methyl-CpG binding domain Back     alignment and domain information
>gnl|CDD|197636 smart00297, BROMO, bromo domain Back     alignment and domain information
>gnl|CDD|240069 cd04718, BAH_plant_2, BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>gnl|CDD|99922 cd04369, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|215921 pfam00439, Bromodomain, Bromodomain Back     alignment and domain information
>gnl|CDD|218831 pfam05965, FYRC, F/Y rich C-terminus Back     alignment and domain information
>gnl|CDD|99932 cd05500, Bromo_BDF1_2_I, Bromodomain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 1297
KOG1474 640 consensus Transcription initiation factor TFIID, s 99.59
PF0596454 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The 99.47
cd0550699 Bromo_plant1 Bromodomain, uncharacterized subfamil 99.45
cd05496119 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like sub 99.41
cd05495108 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cb 99.4
cd0550397 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like s 99.39
cd0550597 Bromo_WSTF_like Bromodomain; Williams syndrome tra 99.35
cd05498102 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamil 99.35
cd05501102 Bromo_SP100C_like Bromodomain, SP100C_like subfami 99.34
cd05500103 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfami 99.32
cd05499102 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfam 99.32
cd05497107 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily 99.32
cd05504115 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_li 99.31
cd05509101 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. 99.29
PF0596586 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The 99.28
cd05502109 Bromo_tif1_like Bromodomain; tif1_like subfamily. 99.28
cd05507104 Bromo_brd8_like Bromodomain, brd8_like subgroup. I 99.27
cd05516107 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, s 99.25
smart0054286 FYRC "FY-rich" domain, C-terminal region. is somet 99.2
cd05510112 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. 99.17
cd0550899 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RAC 99.13
cd0551398 Bromo_brd7_like Bromodomain, brd7_like subgroup. T 99.12
cd05519103 Bromo_SNF2 Bromodomain, SNF2-like subfamily, speci 99.1
cd05528112 Bromo_AAA Bromodomain; sub-family co-occurring wit 99.09
cd05515105 Bromo_polybromo_V Bromodomain, polybromo repeat V. 99.08
cd05524113 Bromo_polybromo_I Bromodomain, polybromo repeat I. 99.06
cd0551298 Bromo_brd1_like Bromodomain; brd1_like subfamily. 99.05
cd05525106 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 99.02
smart00297107 BROMO bromo domain. 99.0
cd05511112 Bromo_TFIID Bromodomain, TFIID-like subfamily. Hum 98.98
cd0436999 Bromodomain Bromodomain. Bromodomains are found in 98.96
cd05529128 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like 98.96
KOG1244336 consensus Predicted transcription factor Requiem/N 98.95
PF0043984 Bromodomain: Bromodomain; InterPro: IPR001487 Brom 98.94
cd05518103 Bromo_polybromo_IV Bromodomain, polybromo repeat I 98.92
cd05517103 Bromo_polybromo_II Bromodomain, polybromo repeat I 98.9
cd05520103 Bromo_polybromo_III Bromodomain, polybromo repeat 98.85
smart0054144 FYRN "FY-rich" domain, N-terminal region. is somet 98.76
cd05521106 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_lik 98.75
cd05522104 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_l 98.72
KOG0825 1134 consensus PHD Zn-finger protein [General function 98.71
cd05492109 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family 98.69
PF0142977 MBD: Methyl-CpG binding domain; InterPro: IPR00173 98.64
KOG4299613 consensus PHD Zn-finger protein [General function 98.61
KOG1244336 consensus Predicted transcription factor Requiem/N 98.5
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.45
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 98.39
KOG4299 613 consensus PHD Zn-finger protein [General function 98.34
KOG12451404 consensus Chromatin remodeling complex WSTF-ISWI, 98.32
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.24
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 98.11
cd0012262 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and 98.1
cd0139677 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are me 98.08
KOG1512381 consensus PHD Zn-finger protein [General function 98.03
KOG1512381 consensus PHD Zn-finger protein [General function 98.02
KOG1973274 consensus Chromatin remodeling protein, contains P 97.96
COG5076371 Transcription factor involved in chromatin remodel 97.93
KOG0383696 consensus Predicted helicase [General function pre 97.9
KOG08251134 consensus PHD Zn-finger protein [General function 97.86
KOG1245 1404 consensus Chromatin remodeling complex WSTF-ISWI, 97.85
smart0039177 MBD Methyl-CpG binding domain. Methyl-CpG binding 97.81
KOG4443 694 consensus Putative transcription factor HALR/MLL3, 97.77
cd05526110 Bromo_polybromo_VI Bromodomain, polybromo repeat V 97.72
KOG1973274 consensus Chromatin remodeling protein, contains P 97.51
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 97.47
KOG0957707 consensus PHD finger protein [General function pre 97.39
PF0279161 DDT: DDT domain; InterPro: IPR004022 This domain i 97.3
KOG0383 696 consensus Predicted helicase [General function pre 97.24
cd04718148 BAH_plant_2 BAH, or Bromo Adjacent Homology domain 97.24
cd05494114 Bromodomain_1 Bromodomain; uncharacterized subfami 97.02
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 96.98
smart0057163 DDT domain in different transcription and chromoso 96.85
KOG4323464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.73
cd0139773 HAT_MBD Methyl-CpG binding domains (MBD) present i 96.71
COG5034271 TNG2 Chromatin remodeling protein, contains PhD zi 96.67
KOG1472720 consensus Histone acetyltransferase SAGA/ADA, cata 96.43
cd05491119 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, 96.4
KOG0957707 consensus PHD finger protein [General function pre 96.38
KOG14731414 consensus Nucleosome remodeling factor, subunit NU 96.16
KOG4323 464 consensus Polycomb-like PHD Zn-finger protein [Gen 96.04
KOG4443694 consensus Putative transcription factor HALR/MLL3, 95.89
COG5141 669 PHD zinc finger-containing protein [General functi 95.73
KOG0954893 consensus PHD finger protein [General function pre 95.7
KOG0954 893 consensus PHD finger protein [General function pre 95.61
KOG0956 900 consensus PHD finger protein AF10 [General functio 95.22
cd0139560 HMT_MBD Methyl-CpG binding domains (MBD) present i 94.57
COG5141669 PHD zinc finger-containing protein [General functi 94.4
KOG0956900 consensus PHD finger protein AF10 [General functio 94.27
KOG1473 1414 consensus Nucleosome remodeling factor, subunit NU 93.67
KOG4161272 consensus Methyl-CpG binding transcription regulat 93.41
KOG0955 1051 consensus PHD finger protein BR140/LIN-49 [General 93.23
KOG1246 904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 93.12
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 92.99
PF1383136 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A. 91.38
KOG00081563 consensus Transcription initiation factor TFIID, s 90.42
PF1444654 Prok-RING_1: Prokaryotic RING finger family 1 89.94
KOG1474 640 consensus Transcription initiation factor TFIID, s 87.11
KOG4628348 consensus Predicted E3 ubiquitin ligase [Posttrans 84.26
KOG1246904 consensus DNA-binding protein jumonji/RBP2/SMCY, c 83.96
KOG1734328 consensus Predicted RING-containing E3 ubiquitin l 82.16
PF15446175 zf-PHD-like: PHD/FYVE-zinc-finger like domain 80.6
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information 
Probab=99.59  E-value=1.1e-15  Score=185.09  Aligned_cols=107  Identities=24%  Similarity=0.367  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726         1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus      1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
                      ..+|++|..||++++++..+++|+.|||.        +..||++|+.||++|||||||+.+|..|.|. ++..|++|||+
T Consensus       221 ~~~lk~C~~iLk~l~~~k~awpF~~PVD~--------v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~-~~~eF~~DVRL  291 (640)
T KOG1474|consen  221 VELLKQCLSILKRLMKHKHAWPFNEPVDV--------VKLGLPDYHDIIKHPMDLGTIKKKLEKGEYK-SAEEFAADVRL  291 (640)
T ss_pred             HHHHHHHHHHHHHHHhccCCCCcCCCcCH--------HhcCCcchhhhcCCCccHHHHHhhhcccccC-CHHHHHHHHHH
Confidence            45999999999999999998888887765        6667999999999999999999999999999 78889999999


Q ss_pred             HHhhhhhccCCCchHHHHHHHhhhhhhhhhhhhhHh
Q 047726         1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYENEIVT 1187 (1297)
Q Consensus      1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYekqvL~ 1187 (1297)
                      +|+||++||..+.+|+.||..|...||.+|....+.
T Consensus       292 ~F~Ncm~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~  327 (640)
T KOG1474|consen  292 TFDNCMTYNPEGSDVYAMAKKLQEVFEERWASMPLE  327 (640)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence            999999999999999999999999999999975553

>PF05964 FYRN: F/Y-rich N-terminus; InterPro: IPR003888 The "FY-rich" domain N-terminal region is sometimes closely juxtaposed with the C-terminal region (IPR003889 from INTERPRO), but sometimes is far distant Back     alignment and domain information
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants Back     alignment and domain information
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily Back     alignment and domain information
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily Back     alignment and domain information
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily Back     alignment and domain information
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like) Back     alignment and domain information
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II Back     alignment and domain information
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily Back     alignment and domain information
>cd05500 Bromo_BDF1_2_I Bromodomain Back     alignment and domain information
>cd05499 Bromo_BDF1_2_II Bromodomain Back     alignment and domain information
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I Back     alignment and domain information
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily Back     alignment and domain information
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily Back     alignment and domain information
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant Back     alignment and domain information
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily Back     alignment and domain information
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup Back     alignment and domain information
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals Back     alignment and domain information
>smart00542 FYRC "FY-rich" domain, C-terminal region Back     alignment and domain information
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily Back     alignment and domain information
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily Back     alignment and domain information
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup Back     alignment and domain information
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi Back     alignment and domain information
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains Back     alignment and domain information
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V Back     alignment and domain information
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I Back     alignment and domain information
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily Back     alignment and domain information
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family Back     alignment and domain information
>smart00297 BROMO bromo domain Back     alignment and domain information
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily Back     alignment and domain information
>cd04369 Bromodomain Bromodomain Back     alignment and domain information
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins [] Back     alignment and domain information
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV Back     alignment and domain information
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II Back     alignment and domain information
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III Back     alignment and domain information
>smart00541 FYRN "FY-rich" domain, N-terminal region Back     alignment and domain information
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family Back     alignment and domain information
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription] Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG4299 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>cd01396 MeCP2_MBD MeCP2, MBD1, MBD2, MBD3, and MBD4 are members of a protein family that share the methyl-CpG-binding domain (MBD) Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1512 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>KOG0825 consensus PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics] Back     alignment and domain information
>smart00391 MBD Methyl-CpG binding domain Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI Back     alignment and domain information
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics] Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>PF02791 DDT: DDT domain; InterPro: IPR004022 This domain is predicted to be a DNA binding domain Back     alignment and domain information
>KOG0383 consensus Predicted helicase [General function prediction only] Back     alignment and domain information
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function Back     alignment and domain information
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>smart00571 DDT domain in different transcription and chromosome remodeling factors Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>cd01397 HAT_MBD Methyl-CpG binding domains (MBD) present in putative chromatin remodelling factor such as BAZ2A; BAZ2A contains a MBD, DDT, PHD-type zinc finger and Bromo domain suggesting that BAZ2A might be associated with histone acetyltransferase (HAT) activity Back     alignment and domain information
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi Back     alignment and domain information
>KOG0957 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only] Back     alignment and domain information
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only] Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0954 consensus PHD finger protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>cd01395 HMT_MBD Methyl-CpG binding domains (MBD) present in putative histone methyltransferases (HMT) such as CLLD8 and SETDB1 proteins; CLLD8 contains a MBD, a PreSET and a bifurcated SET domain, suggesting that CLLD8 might be associated with methylation-mediated transcriptional repression Back     alignment and domain information
>COG5141 PHD zinc finger-containing protein [General function prediction only] Back     alignment and domain information
>KOG0956 consensus PHD finger protein AF10 [General function prediction only] Back     alignment and domain information
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG4161 consensus Methyl-CpG binding transcription regulators [Transcription; Chromatin structure and dynamics] Back     alignment and domain information
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only] Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A Back     alignment and domain information
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription] Back     alignment and domain information
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1 Back     alignment and domain information
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription] Back     alignment and domain information
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only] Back     alignment and domain information
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1297
2e6r_A92 Solution Structure Of The Phd Domain In Smcy Protei 7e-10
1f62_A51 Wstf-Phd Length = 51 4e-09
3ask_A226 Structure Of Uhrf1 In Complex With Histone Tail Len 7e-09
4gy5_A241 Crystal Structure Of The Tandem Tudor Domain And Pl 7e-09
2kwj_A114 Solution Structures Of The Double Phd Fingers Of Hu 5e-08
3zvz_B57 Phd Finger Of Human Uhrf1 Length = 57 9e-08
2e6s_A77 Solution Structure Of The Phd Domain In Ring Finger 1e-07
3zvy_A72 Phd Finger Of Human Uhrf1 In Complex With Unmodifie 1e-07
3shb_A77 Crystal Structure Of Phd Domain Of Uhrf1 Length = 7 1e-07
3t6r_A72 Structure Of Uhrf1 In Complex With Unmodified H3 N- 1e-07
2puy_A60 Crystal Structure Of The Bhc80 Phd Finger Length = 1e-07
3sou_A70 Structure Of Uhrf1 Phd Finger In Complex With Histo 2e-07
2lgg_A69 Structure Of Phd Domain Of Uhrf1 In Complex With H3 2e-07
1mm2_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 3e-07
2ysm_A111 Solution Structure Of The First And Second Phd Doma 1e-06
2l5u_A61 Structure Of The First Phd Finger (Phd1) From Chd4 2e-06
1mm3_A61 Solution Structure Of The 2nd Phd Domain From Mi2b 3e-06
2yql_A56 Solution Structure Of The Phd Domain In Phd Finger 5e-06
3v43_A112 Crystal Structure Of Moz Length = 112 8e-06
2ln0_A110 Structure Of Moz Length = 110 1e-05
1xwh_A66 Nmr Structure Of The First Phd Finger Of Autoimmune 4e-05
2kft_A56 Nmr Solution Structure Of The First Phd Finger Doma 6e-05
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein Length = 92 Back     alignment and structure 
Iteration: 1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 1225 DEGICKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVV 1275
            D  IC+VC    +DD +L CD CD  YH +CL PPL  IP G W CP C++
Sbjct: 15   DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65
>pdb|1F62|A Chain A, Wstf-Phd Length = 51 Back     alignment and structure
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail Length = 226 Back     alignment and structure
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant Homeodomain Of Uhrf1 With Histone H3k9me3 Length = 241 Back     alignment and structure
>pdb|2KWJ|A Chain A, Solution Structures Of The Double Phd Fingers Of Human Transcriptional Protein Dpf3 Bound To A Histone Peptide Containing Acetylation At Lysine 14 Length = 114 Back     alignment and structure
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1 Length = 57 Back     alignment and structure
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger Protein 107 Length = 77 Back     alignment and structure
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone H3 N-Terminal Tail Length = 72 Back     alignment and structure
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1 Length = 77 Back     alignment and structure
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3 N-Terminal Tail Length = 72 Back     alignment and structure
>pdb|2PUY|A Chain A, Crystal Structure Of The Bhc80 Phd Finger Length = 60 Back     alignment and structure
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3 1-9 Peptide Length = 70 Back     alignment and structure
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3 Peptide Length = 69 Back     alignment and structure
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b Length = 61 Back     alignment and structure
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3 Homolog Length = 111 Back     alignment and structure
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b) Length = 61 Back     alignment and structure
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C- Terminal Loop Replaced By Corresponding Loop From Wstf Length = 61 Back     alignment and structure
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein 21a Length = 56 Back     alignment and structure
>pdb|3V43|A Chain A, Crystal Structure Of Moz Length = 112 Back     alignment and structure
>pdb|2LN0|A Chain A, Structure Of Moz Length = 110 Back     alignment and structure
>pdb|1XWH|A Chain A, Nmr Structure Of The First Phd Finger Of Autoimmune Regulator Protein (Aire1): Insights Into Apeced Length = 66 Back     alignment and structure
>pdb|2KFT|A Chain A, Nmr Solution Structure Of The First Phd Finger Domain Of Human Autoimmune Regulator (Aire) In Complex With Histone H3(1-20cys) Peptide Length = 56 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query1297
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 2e-22
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 3e-22
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 3e-20
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 3e-20
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 3e-04
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 2e-19
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 4e-19
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 5e-19
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 7e-19
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 3e-18
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 5e-15
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 4e-18
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 5e-18
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 1e-17
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 7e-07
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 2e-17
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 9e-04
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 3e-17
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 1e-16
2yt5_A66 Metal-response element-binding transcription facto 2e-15
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 1e-14
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 8e-14
2k16_A75 Transcription initiation factor TFIID subunit 3; p 3e-13
2k16_A75 Transcription initiation factor TFIID subunit 3; p 2e-04
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 2e-12
2ro1_A 189 Transcription intermediary factor 1-beta; KAP, TIF 4e-12
2wzo_A146 Transforming growth factor beta regulator 1; nucle 1e-10
3o36_A 184 Transcription intermediary factor 1-alpha; TRIM24, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 1e-07
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 3e-07
3u5n_A 207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 1e-06
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 8e-06
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 2e-05
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 1e-05
1we9_A64 PHD finger family protein; structural genomics, PH 2e-05
1we9_A64 PHD finger family protein; structural genomics, PH 7e-04
3p1f_A119 CREB-binding protein; structural genomics consorti 2e-05
1x4i_A70 Inhibitor of growth protein 3; structural genomics 3e-05
3fkm_X166 Signaling protein; bromodomain, malaria, structura 3e-05
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 4e-05
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 4e-05
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 5e-05
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 1e-04
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 1e-04
4alg_A154 Bromodomain-containing protein 2; signaling protei 1e-04
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 2e-04
1wem_A76 Death associated transcription factor 1; structura 2e-04
1wem_A76 Death associated transcription factor 1; structura 8e-04
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 3e-04
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 4e-04
3o70_A68 PHD finger protein 13; PHF13, structural genomics 4e-04
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 4e-04
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 4e-04
2r0y_A311 Chromatin structure-remodeling complex protein RSC 7e-04
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 51 Back     alignment and structure
 Score = 90.1 bits (224), Expect = 2e-22
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 1229 CKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVV 1275
            CKVC    +DD ++LCD C+  +H +CL P L  +P+G W CP+C  
Sbjct: 3    CKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 92 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 77 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Length = 114 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Length = 70 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Length = 226 Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Length = 77 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Length = 61 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Length = 111 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Length = 61 Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Length = 60 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Length = 112 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 56 Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Length = 66 Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Length = 66 Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Length = 71 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Length = 88 Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Length = 189 Back     alignment and structure
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Length = 146 Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Length = 184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Length = 129 Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Length = 142 Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Length = 207 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Length = 105 Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Length = 62 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Length = 64 Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Length = 119 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70 Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Length = 166 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Length = 65 Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Length = 123 Back     alignment and structure
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Length = 135 Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Length = 147 Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Length = 127 Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Length = 154 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Length = 52 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Length = 76 Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} Length = 75 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Length = 183 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Length = 68 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Length = 60 Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Length = 130 Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Length = 311 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1297
2wzo_A146 Transforming growth factor beta regulator 1; nucle 99.94
3mb3_A135 PH-interacting protein; PHIP, pleckstrin homology 99.47
3nxb_A116 CAT eye syndrome critical region protein 2; struct 99.47
2ouo_A130 HUNK1 protein, bromodomain-containing protein 4; B 99.47
2yyn_A135 Transcription intermediary factor 1-alpha; bromo d 99.46
3d7c_A112 General control of amino acid synthesis protein 5; 99.45
3g0l_A117 Hwalp4, bromodomain adjacent to zinc finger domain 99.45
3fkm_X166 Signaling protein; bromodomain, malaria, structura 99.43
2oss_A127 HUNK1 protein, bromodomain-containing protein 4; B 99.42
3jvl_A120 Bromodomain-containing protein 4; alpha helical, N 99.42
1e6i_A121 Transcriptional activator GCN5; gene regulation, b 99.41
2i7k_A117 Bromodomain-containing protein 7; helix, LEFT-hand 99.41
3q2e_A123 Bromodomain and WD repeat-containing protein 1; st 99.41
2dat_A123 Possible global transcription activator SNF2L2; br 99.4
4alg_A154 Bromodomain-containing protein 2; signaling protei 99.39
2grc_A129 Probable global transcription activator SNF2L4; br 99.37
3p1f_A119 CREB-binding protein; structural genomics consorti 99.36
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.35
2d9e_A121 Peregrin; four-helix bundle, transcription activat 99.35
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 99.34
3iu5_A116 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.33
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 99.33
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 99.33
3ljw_A120 Protein polybromo-1; alpha helix, alternative spli 99.32
3mb4_A124 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.31
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 99.3
3hme_A123 Bromodomain-containing protein 9; BRD9, bromodomai 99.3
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 99.3
3mqm_A126 Probable histone-lysine N-methyltransferase ASH1L; 99.3
3rcw_A135 Bromodomain-containing protein 1; transcription, s 99.29
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 99.28
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 99.28
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 99.27
3k2j_A130 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.26
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 99.26
1fp0_A88 KAP-1 corepressor; PHD domain, C3HC4 type zinc bin 99.25
1mm2_A61 MI2-beta; PHD, zinc finger, protein scaffold, DNA 99.25
1xwh_A66 Autoimmune regulator; PHD domain, Zn binding domai 99.24
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 99.23
2lri_C66 Autoimmune regulator; Zn binding protein domain, a 99.22
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 99.21
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 99.19
3o36_A184 Transcription intermediary factor 1-alpha; TRIM24, 99.17
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.17
2puy_A60 PHD finger protein 21A; PHD finger, histone CODE, 99.17
3uv4_A158 Second bromodomain of human transcription initiat 99.17
3tlp_A150 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 99.16
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.16
2yt5_A66 Metal-response element-binding transcription facto 99.16
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 99.16
2l5u_A61 Chromodomain-helicase-DNA-binding protein 4; CHD4, 99.16
2yql_A56 PHD finger protein 21A; PHD domain, structural gen 99.16
3u5n_A207 E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b 99.16
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 99.15
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 99.15
1wev_A88 Riken cDNA 1110020M19; structural genomics, PHD do 99.14
3dai_A130 ATPase family AAA domain-containing protein 2; anc 99.14
2e6r_A92 Jumonji/ARID domain-containing protein 1D; PHD dom 99.13
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 99.11
2yt5_A66 Metal-response element-binding transcription facto 99.1
2dkw_A131 Hypothetical protein KIAA1240; bromodomain-like, f 99.09
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 99.08
3aad_A292 Transcription initiation factor TFIID subunit 1; p 99.07
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 99.04
2ku3_A71 Bromodomain-containing protein 1; PHD finger, chro 99.04
2ro1_A189 Transcription intermediary factor 1-beta; KAP, TIF 99.03
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 99.03
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 99.01
2l43_A88 N-teminal domain from histone H3.3, linker, PHD1 f 99.01
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 99.0
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 99.0
2k16_A75 Transcription initiation factor TFIID subunit 3; p 99.0
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 99.0
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.99
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 98.9
3uv5_A265 Transcription initiation factor TFIID subunit 1; t 98.89
2k16_A75 Transcription initiation factor TFIID subunit 3; p 98.87
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 98.85
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 98.85
3aad_A292 Transcription initiation factor TFIID subunit 1; p 98.85
2kwj_A114 Zinc finger protein DPF3; acetyl-lysine, transcrip 98.82
2r0y_A311 Chromatin structure-remodeling complex protein RSC 98.8
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.79
2r10_A361 Chromatin structure-remodeling complex protein RSC 98.78
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 98.76
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.7
1weu_A91 Inhibitor of growth family, member 4; structural g 98.64
2r10_A361 Chromatin structure-remodeling complex protein RSC 98.64
4gne_A107 Histone-lysine N-methyltransferase NSD3; zinc fing 98.62
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.59
2ysm_A111 Myeloid/lymphoid or mixed-lineage leukemia protein 98.57
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 98.57
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.54
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.54
2r0y_A311 Chromatin structure-remodeling complex protein RSC 98.53
3vxv_A69 Methyl-CPG-binding domain protein 4; methyl CPG bi 98.52
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 98.52
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.52
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 98.48
1we9_A64 PHD finger family protein; structural genomics, PH 98.47
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.45
1ub1_A133 MECP2, attachment region binding protein; chicken 98.39
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 98.37
2ky8_A72 Methyl-CPG-binding domain protein 2; DNA binding d 98.35
1weu_A91 Inhibitor of growth family, member 4; structural g 98.32
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 98.32
2lbm_A142 Transcriptional regulator ATRX; metal binding prot 98.31
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 98.31
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 98.29
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 98.27
1d9n_A75 Methyl-CPG-binding protein MBD1; PCM1, methylation 98.27
1x4i_A70 Inhibitor of growth protein 3; structural genomics 98.23
3c2i_A97 Methyl-CPG-binding protein 2; water mediated recog 98.21
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 98.19
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 98.16
1wee_A72 PHD finger family protein; structural genomics, PH 98.11
3ql9_A129 Transcriptional regulator ATRX; zinc finger, trans 98.0
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 98.0
1wew_A78 DNA-binding family protein; structural genomics, P 97.99
3o70_A68 PHD finger protein 13; PHF13, structural genomics 97.93
1wem_A76 Death associated transcription factor 1; structura 97.91
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 97.84
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 97.81
3iu6_A147 Protein polybromo-1; PB1, polybromo 1 isoform 1, B 97.79
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 97.78
3o70_A68 PHD finger protein 13; PHF13, structural genomics 97.76
1wil_A89 KIAA1045 protein; ring finger domain, structural g 97.74
1x4i_A70 Inhibitor of growth protein 3; structural genomics 97.72
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 97.7
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 97.55
1we9_A64 PHD finger family protein; structural genomics, PH 97.53
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 97.49
1wee_A72 PHD finger family protein; structural genomics, PH 97.44
3kv5_D488 JMJC domain-containing histone demethylation prote 97.41
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 97.31
1wem_A76 Death associated transcription factor 1; structura 97.23
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 97.23
1wew_A78 DNA-binding family protein; structural genomics, P 97.18
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 97.11
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 97.04
3kv4_A447 PHD finger protein 8; epigenetics, histone CODE, c 97.02
3pur_A528 Lysine-specific demethylase 7 homolog; oxidoreduct 96.98
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 96.91
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 96.72
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 96.6
1wil_A89 KIAA1045 protein; ring finger domain, structural g 96.55
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 95.71
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 95.48
3kv5_D 488 JMJC domain-containing histone demethylation prote 95.44
4bbq_A117 Lysine-specific demethylase 2A; oxidoreductase, ub 95.34
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 93.22
3a1b_A159 DNA (cytosine-5)-methyltransferase 3A, histone H3; 93.0
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 91.45
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 90.45
2ct0_A74 Non-SMC element 1 homolog; ring domain, structural 89.61
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 89.22
2ku7_A140 MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio 87.91
3rsn_A177 SET1/ASH2 histone methyltransferase complex subun; 81.51
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 80.99
>2wzo_A Transforming growth factor beta regulator 1; nucleus, cell cycle, tumor suppressor; 1.60A {Homo sapiens} Back     alignment and structure
Probab=99.94  E-value=1.8e-27  Score=238.31  Aligned_cols=133  Identities=24%  Similarity=0.494  Sum_probs=108.8

Q ss_pred             CcCEEeccEEEEEeceecCC-CCCCCCCceecCCeEE---EeEc--CCCCeEEEEEEeeCCCCCCeEEEEeecCCCCCcC
Q 047726          365 GLPVQFEDFFILSLGHVDGR-PSYHNVNVIYPVGYTS---CWHD--KITGSLFICEVLDGGDSGPVFKVTRCSCSALPIP  438 (1297)
Q Consensus       365 g~P~~vg~l~v~SLGeI~~~-p~FHse~~IyPVGY~s---~~~~--~~~~~~y~C~IlDGG~~GP~F~I~~~~~~~~pi~  438 (1297)
                      -||+++|+|+|+|||+|+++ ++||+++|||||||++   ||+.  ++.+|.|+|+|+|+|+ +|+|+|++.+       
T Consensus         4 ~lP~~~g~l~v~slG~i~~~~~~fh~~~~IyPvGy~~~R~y~s~~dp~~~~~Y~c~I~d~~~-~P~F~V~~e~-------   75 (146)
T 2wzo_A            4 VFPIGLGGLTVYSLGEIITDRPGFHDESAIYPVGYCSTRIYASMKCPDQKCLYTCQIKDGGV-QPQFEIVPED-------   75 (146)
T ss_dssp             CCCEEETTEEEEEEEECCCSSGGGBCSSCBCCEEEEEEEEEECSSCTTSEEEEEEEEEECSS-SEEEEEEETT-------
T ss_pred             eecEEECCEEEEEeeeEccCCCCccCCCceeCCCEEEEEEEecccCCCCeEEEEEEEEECCC-cceeEEEecC-------
Confidence            48999999999999999987 9999999999999999   8885  4555999999999986 7999999544       


Q ss_pred             CCCcccccCCcccccCCccccCCCccccCCCCCcccchhhhccCCCCCCccccccccCcCCCCCCCCCCCceEEecCCch
Q 047726          439 DGSTILFRPNFVQCSGRDHEANGDFTSYSKDYDSDVNIQMILSDPCLPVDNDILTCLGSCSNKSCDDDIGEISVEDRSLS  518 (1297)
Q Consensus       439 ~~Sti~~~~n~~~~~~q~~~~~~~~~~~~~d~d~~~n~~~ll~d~~~~~~dd~~~c~~~~~~~~~~~~ige~~~e~~s~~  518 (1297)
                                                                                         + -+..++|.|+.
T Consensus        76 -------------------------------------------------------------------~-~~~~~~g~Sp~   87 (146)
T 2wzo_A           76 -------------------------------------------------------------------D-PQNAIVSSSAD   87 (146)
T ss_dssp             -------------------------------------------------------------------C-GGGCEEESSHH
T ss_pred             -------------------------------------------------------------------C-CCceEEeCChH
Confidence                                                                               1 13467899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcCceeeeccccccccccccccchhhhhhhhhhhhhhccCCCCc-cccCcccCCcchhhhH
Q 047726          519 SAWRRLSQKFVDACFEICKQKGVLKFSCKHIENSREFANWDMVDEKEKMRFTSLNKFCGSSVS-VSIPSEFRGDNELDML  597 (1297)
Q Consensus       519 s~W~~v~~k~~~~c~~~~k~~g~l~~~c~h~~~~~~~~~~~~~~~~~~~~~~~~~~fc~~~~p-~~i~~~~~~~~~~~~~  597 (1297)
                      .+|++|.+++    .+++   |.  .+                                   | ..+.            
T Consensus        88 ~~W~~il~~i----~~~~---~~--~~-----------------------------------~~~~~s------------  111 (146)
T 2wzo_A           88 ACHAELLRTI----STTM---GK--LM-----------------------------------PNLLPA------------  111 (146)
T ss_dssp             HHHHHHHHHH----HHHH---TC--CC-----------------------------------TTCCCC------------
T ss_pred             HHHHHHHHHH----HHHh---cC--cC-----------------------------------CCCCCC------------
Confidence            9995555554    4443   21  11                                   1 1345            


Q ss_pred             HHHHhhhcccccccCCHHHHHHHHHhCCCCcccccchhhc
Q 047726          598 ADVLLKWLDQDRFGLEAEFVQEVIEQLPGVKDCSQYEFLI  637 (1297)
Q Consensus       598 ~~~l~~wl~qDrfGLd~~fVqeiiE~LPgv~~c~~Y~fl~  637 (1297)
                              |+|.|||+.+.|+++||+|||++.|.+|+|+.
T Consensus       112 --------G~~~FGl~~p~V~~lie~Lpg~~~C~~Y~~~~  143 (146)
T 2wzo_A          112 --------GADFFGFSHPAIHNLIQSCPGARKCINYQWVK  143 (146)
T ss_dssp             --------HHHHHTTTSHHHHHHHTTSTTGGGCTTCCCCC
T ss_pred             --------hhheecCCCHHHHHHHHhCCCchhcccCCcEE
Confidence                    89999999999999999999999999999874
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens} Back     alignment and structure
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0 Back     alignment and structure
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A* Back     alignment and structure
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens} Back     alignment and structure
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A Back     alignment and structure
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A Back     alignment and structure
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7} Back     alignment and structure
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ... Back     alignment and structure
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A* Back     alignment and structure
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1 Back     alignment and structure
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens} Back     alignment and structure
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens} Back     alignment and structure
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A Back     alignment and structure
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A Back     alignment and structure
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A Back     alignment and structure
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens} Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens} Back     alignment and structure
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens} Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A Back     alignment and structure
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens} Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens} Back     alignment and structure
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A Back     alignment and structure
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A* Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A Back     alignment and structure
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus} Back     alignment and structure
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens} Back     alignment and structure
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens} Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens} Back     alignment and structure
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A* Back     alignment and structure
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A* Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A Back     alignment and structure
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A* Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3 Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus} Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A* Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens} Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens} Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A* Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens} Back     alignment and structure
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 1297
d1fp0a170 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF- 1e-15
d1f62a_51 g.50.1.2 (A:) Williams-Beuren syndrome transcripti 3e-15
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 5e-13
d1mm2a_61 g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens 1e-04
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 1e-11
d1weea_72 g.50.1.2 (A:) PHD finger protein At1g33420 {Thale 5e-04
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 8e-11
d1weva_88 g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus mu 5e-05
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 3e-10
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 5e-06
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 3e-09
d1wema_76 g.50.1.2 (A:) Death associated transcription facto 0.001
d3dwya1114 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP { 6e-06
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 6e-06
d1wepa_79 g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus mus 0.002
d1e6ia_111 a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces c 2e-05
d3d7ca1102 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [T 2e-05
d1wesa_71 g.50.1.2 (A:) PHD Inhibitor of growth protein 2, I 3e-05
d2pnxa151 g.50.1.2 (A:195-245) Inhibitor of growth protein 4 1e-04
d1wuma1118 a.29.2.1 (A:715-832) P300/CAF histone acetyltransf 1e-04
d1eqfa1139 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain 3e-04
d1eqfa2128 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain 0.002
d1qk9a_92 d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 0.003
d1wewa_78 g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale c 0.004
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Length = 70 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 1e-15
 Identities = 13/50 (26%), Positives = 22/50 (44%)

Query: 1229 CKVCGVDKDDDSVLLCDTCDAEYHTYCLEPPLVRIPEGNWYCPSCVVRNS 1278
              +C V +    +++C+ C+  +H  C  P L  +P   W C  C V   
Sbjct: 7    ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPD 56
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 72 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Length = 88 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 76 Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Length = 114 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Length = 79 Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 111 Back     information, alignment and structure
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 71 Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 139 Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Length = 128 Back     information, alignment and structure
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query1297
d3d7ca1102 GCN5 {Human (Homo sapiens) [TaxId: 9606]} 99.4
d1wuma1118 P300/CAF histone acetyltransferase bromodomain {Hu 99.34
d3dwya1114 CREB-binding protein, CBP {Human (Homo sapiens) [T 99.34
d1eqfa1139 TAFII250 double bromodomain module {Human (Homo sa 99.33
d1e6ia_111 GCN5 {Baker's yeast (Saccharomyces cerevisiae) [Ta 99.32
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 99.16
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 99.16
d1eqfa2128 TAFII250 double bromodomain module {Human (Homo sa 99.09
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.05
d1fp0a170 Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo 99.02
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 98.92
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 98.9
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.72
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 98.6
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 98.4
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.37
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.33
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.28
d1ig4a_75 Methylation-dependent transcriptional repressor MB 98.2
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 98.19
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.16
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 98.1
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 98.06
d2pnxa151 Inhibitor of growth protein 4, Ing4 {Homo sapiens 98.03
d1qk9a_92 Methyl-CpG-binding protein 2, MECP2 {Human (Homo s 98.03
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.96
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 97.83
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 97.74
d1wema_76 Death associated transcription factor 1, Datf1 (DI 97.56
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 97.31
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 95.33
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 89.77
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 84.02
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Bromodomain-like
superfamily: Bromodomain
family: Bromodomain
domain: GCN5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.1e-13  Score=126.64  Aligned_cols=100  Identities=16%  Similarity=0.207  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCchhhhhccCCCCCCCCCCCCCCCCCCCcccccCCChhhhhhhhcccccCCCchhHHHHHHH
Q 047726         1072 SIIMKQCRIVLRQAAAADDEKVFCNLLGRKPLSSTDNDDEGFLGSPAMVSRPLDFRTIDLRLAVGAYDGSHDSFLQDVRE 1151 (1297)
Q Consensus      1072 dlimKRCr~VLr~l~ss~~s~vF~~pv~~~~LdseD~i~qGllGYp~vVkRPMDLgTIDlRLAaGaY~GS~e~FaEDVre 1151 (1297)
                      +.+...|+.||..+..++.+.+|..|++.          ..+|+|..+|++||||+||..|+..|.|. +...|.+|+++
T Consensus         1 d~L~~~l~~il~~l~~~~~s~~F~~pv~~----------~~~pdY~~~I~~PmdL~tI~~kl~~~~Y~-s~~~f~~D~~l   69 (102)
T d3d7ca1           1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKK----------SEAPDYYEVIRFPIDLKTMTERLRSRYYV-TRKLFVADLQR   69 (102)
T ss_dssp             HHHHHHHHHHHHHHHHSGGGGGGSSCCCT----------TTSTTHHHHCSSCCCHHHHHHHHHTTCCC-SHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCCCCCccCCCCCh----------hhCcCHHHHcCCccCHHHHHHHhccCccC-CHHHHHHHHHH
Confidence            45788999999999999999999998754          34899999999999999999999999998 88889999999


Q ss_pred             HHhhhhhccCCCchHHHHHHHhhhhhhhhhh
Q 047726         1152 FWNNVRTAFGDQPDFVDLAEKLSRNFESLYE 1182 (1297)
Q Consensus      1152 VWsN~~Tyn~dg~dVv~LAEsLSq~FESrYe 1182 (1297)
                      +|+||..||+.++.++.+|..|.+.|+.+++
T Consensus        70 i~~Na~~yN~~~s~~~~~A~~l~~~f~~~~k  100 (102)
T d3d7ca1          70 VIANCREYNPPDSEYCRCASALEKFFYFKLK  100 (102)
T ss_dssp             HHHHHHHHSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999887654
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ig4a_ d.10.1.3 (A:) Methylation-dependent transcriptional repressor MBD1/PCM1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]} Back     information, alignment and structure
>d1qk9a_ d.10.1.3 (A:) Methyl-CpG-binding protein 2, MECP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure