Citrus Sinensis ID: 047738

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-
DLVGSMCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCLKSNS
ccHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccccHHHHHHHHHHHHHccccccEEEEccccEEEEEEEEEEcccccccEEEEEcEEEEcccccccccccccEEEEEEEEEcEEEEEcEEEEccccccccccccccccccccccccEEEEEEEEEcEEEEEEEEEccccEEEEEEcEEEEEEEEEEEEcccccccccEEEccccccEEEEccEEEEEEEEEEcccccEEEEEcccccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEEcccccEEEEEEEccccccccccccEEEEEEEEEEEEEEEEccccEEEEEccccccEEcEEEEEEEEEEccccccccEEEEEcEEEcccEEcccccccccc
cHHHHHHHHHHHHHHHcccccccccccEEEEHccccccccccccHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEEEcccccccEEEEEEEEEEccccHHHccccccEEEEEEEEcEEEEEEcEEEcccccHHHcccccccccccccccccEEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccccEEEEEEEEcccccccccccccEEEEEcccccccccEEEEEEEEEEEEcccccEEEEEccccccEEEEEEEEEEEEEcccccEEEEcccccccccccccccEEEEEEEEEEEEccccccccEEEEEcccccccccEEEEEEEEEEcccccccccEEcccccccccccccHHHccccc
DLVGSMCILILLSTLATHinvnaddqntfnvlnygavgngnsddSLAYAKAWNDACkanaqtptmiipkgktflvhpitfsgpckssnisiqlsgtikapdgpsawtsEIGRWIAFgnitglningrglfdgngqkwwdqsckhhpgkdcseraptavSFIQCNNVHineiyverspqvhIVVDysqdvhfksliidspetspntdgihiarshdvsVHTSIIAAVTYvncgpghgisigslgkngeevkveNITVRHVNFCKTTNGARIKtwqagkgqvQHVEFSYMnftevqnpiiidqyycdqkdvcaktstgvhisdvrylnatgtsatDVAINldcsnnvactdiklenielqsategkgvLSSCKNAfgvakgnckpksclksns
DLVGSMCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAfgvakgnckpksclksns
DLVGSMCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCLKSNS
**VGSMCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDS*******DGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAK*************
*LVGSMCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKD**AKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCLK***
DLVGSMCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNC**********
DLVGSMCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSC*****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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DLVGSMCILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCLKSNS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query391 2.2.26 [Sep-21-2011]
Q9SFB7439 Polygalacturonase QRT2 OS yes no 0.900 0.801 0.390 9e-74
Q94AJ5444 Probable polygalacturonas no no 0.928 0.817 0.376 1e-73
Q02096462 Polygalacturonase OS=Pers N/A no 0.861 0.729 0.411 4e-73
P35336467 Polygalacturonase OS=Acti N/A no 0.843 0.706 0.391 9e-71
P48978460 Polygalacturonase OS=Malu N/A no 0.925 0.786 0.372 4e-70
Q9LW07456 Probable polygalacturonas no no 0.895 0.767 0.372 2e-68
O23147431 Polygalacturonase ADPG1 O no no 0.923 0.837 0.378 3e-68
Q949Z1475 Polygalacturonase At1g481 no no 0.933 0.768 0.369 2e-67
P05117457 Polygalacturonase-2 OS=So N/A no 0.910 0.778 0.389 5e-67
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.930 0.708 0.365 2e-65
>sp|Q9SFB7|QRT2_ARATH Polygalacturonase QRT2 OS=Arabidopsis thaliana GN=QRT2 PE=1 SV=2 Back     alignment and function desciption
 Score =  277 bits (709), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 145/371 (39%), Positives = 213/371 (57%), Gaps = 19/371 (5%)

Query: 28  TFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSS 87
           +FNV  +GA  NGN DDS A+ KAW  AC +      ++ PK + +++  +TFSGPCKSS
Sbjct: 70  SFNVNTFGAKANGN-DDSKAFMKAWEAACSSTGIV-YIVAPKNRDYMLKAVTFSGPCKSS 127

Query: 88  NISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPG 147
            I  ++ G I+A + PS +  E   WI F N+  L + G G  DGNG  WW +SCK +P 
Sbjct: 128 LIIFKIYGRIEAWENPSDY-KERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKINPQ 186

Query: 148 KDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDG 207
             C   APTAV+F++CNN+ ++ I +E + Q+H+     ++V   +L++ SP  SPNTDG
Sbjct: 187 LPCLG-APTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDG 245

Query: 208 IHIARSHDVSVHTSII---------------AAVTYVNCGPGHGISIGSLGKNGEEVKVE 252
           IH++ + ++ +  SI+                  T + CGPGHGISIGSLG++  E  V 
Sbjct: 246 IHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVS 305

Query: 253 NITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAK 312
           N+ V       TTNG RIKTWQ G G  +++ F  +    V NPIII+Q YCD+ + C +
Sbjct: 306 NVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPE 365

Query: 313 TSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKN 372
             + V +S+V Y N  GTS+  +A+   CS N+ C  I ++N++L   T+     +SC N
Sbjct: 366 QKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDVSKASCSN 425

Query: 373 AFGVAKGNCKP 383
                +GN  P
Sbjct: 426 VKLDTRGNVSP 436
Polygalacturonase required for cell type-specific pectin degradation to separate microspores. Involved in anther dehiscence and floral organ abscission.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q94AJ5|PGLR5_ARATH Probable polygalacturonase At1g80170 OS=Arabidopsis thaliana GN=At1g80170 PE=1 SV=1 Back     alignment and function description
>sp|Q02096|PGLR_PERAE Polygalacturonase OS=Persea americana PE=2 SV=1 Back     alignment and function description
>sp|P35336|PGLR_ACTDE Polygalacturonase OS=Actinidia deliciosa PE=2 SV=1 Back     alignment and function description
>sp|P48978|PGLR_MALDO Polygalacturonase OS=Malus domestica PE=2 SV=1 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|Q949Z1|PGLR4_ARATH Polygalacturonase At1g48100 OS=Arabidopsis thaliana GN=At1g48100 PE=2 SV=1 Back     alignment and function description
>sp|P05117|PGLR_SOLLC Polygalacturonase-2 OS=Solanum lycopersicum GN=PG2 PE=1 SV=1 Back     alignment and function description
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
317106729380 JHL06P13.4 [Jatropha curcas] 0.938 0.965 0.5 2e-96
297842853374 hypothetical protein ARALYDRAFT_316947 [ 0.905 0.946 0.449 8e-85
255553151 770 polygalacturonase, putative [Ricinus com 0.833 0.423 0.454 2e-83
5902370381 Similar to polygalacturonases [Arabidops 0.907 0.931 0.442 1e-82
356547430422 PREDICTED: probable polygalacturonase At 0.964 0.893 0.401 5e-79
326518002435 predicted protein [Hordeum vulgare subsp 0.907 0.816 0.412 2e-78
359487296481 PREDICTED: LOW QUALITY PROTEIN: polygala 0.925 0.752 0.397 4e-77
357114981407 PREDICTED: polygalacturonase ADPG1-like 0.918 0.882 0.425 4e-77
218199292429 hypothetical protein OsI_25337 [Oryza sa 0.907 0.827 0.427 1e-76
356555461401 PREDICTED: probable polygalacturonase At 0.964 0.940 0.396 1e-76
>gi|317106729|dbj|BAJ53225.1| JHL06P13.4 [Jatropha curcas] Back     alignment and taxonomy information
 Score =  359 bits (921), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 191/382 (50%), Positives = 251/382 (65%), Gaps = 15/382 (3%)

Query: 8   ILILLSTLATHINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMII 67
           IL +L+ L+   +V +   N +NVL+YGAVG+GN DD+ A+ +AWN AC  +  TP +++
Sbjct: 7   ILYVLTILSIMSSVISSPINHYNVLSYGAVGDGNEDDTQAFVEAWNAACHCDEDTPRLVV 66

Query: 68  PKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPSAWT-SEIGRWIAFGNITGLNING 126
           P+ KTFLV+PI F GPCKS NI + LSGTI APDG + W  + +GRW+AF ++ GLNI G
Sbjct: 67  PEDKTFLVNPINFLGPCKSGNIEVVLSGTIIAPDGSNPWMENNVGRWLAFRDVHGLNITG 126

Query: 127 RGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYS 186
            G+ DG G++WWD  CKHH  K         + F  C +VH+  I   RS   HI +   
Sbjct: 127 DGMLDGRGERWWD-FCKHHRVK--------ILGFSNCTDVHMRGINTARSGGGHIFIFGC 177

Query: 187 QDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAAVTYVNCGPGHGISIGSLGKNG 246
           ++V    L I +P TSPNTDG       D + + +I    T V+CGPGHGISIGSLG NG
Sbjct: 178 ENVDLAFLNIQAPATSPNTDGDDCISMVDRTYNVNI----TNVDCGPGHGISIGSLGANG 233

Query: 247 EEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQ 306
           E V V+NIT+R +NF  TTNGARIKT +AG+G+VQ V F  +N TEV+NPIIIDQ+Y ++
Sbjct: 234 EVVDVQNITIRDINFYGTTNGARIKTCRAGRGRVQDVYFYNINVTEVKNPIIIDQHYGEK 293

Query: 307 KDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGV 366
           K    K   GVHISDV++    GTS + VAI+L+CS NV CT++ L NI L  A  G+ V
Sbjct: 294 KSHSTKMRAGVHISDVQFFGFFGTSKSKVAIDLNCSENVPCTNLSLGNIRLGPAESGE-V 352

Query: 367 LSSCKNAFGVAKGNCKPKSCLK 388
            S+C NAFG   G  +PKSCL+
Sbjct: 353 TSTCNNAFGSTYGVVRPKSCLR 374

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297842853|ref|XP_002889308.1| hypothetical protein ARALYDRAFT_316947 [Arabidopsis lyrata subsp. lyrata] gi|297335149|gb|EFH65567.1| hypothetical protein ARALYDRAFT_316947 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255553151|ref|XP_002517618.1| polygalacturonase, putative [Ricinus communis] gi|223543250|gb|EEF44782.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|5902370|gb|AAD55472.1|AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356547430|ref|XP_003542115.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information
>gi|326518002|dbj|BAK07253.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|359487296|ref|XP_003633562.1| PREDICTED: LOW QUALITY PROTEIN: polygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|357114981|ref|XP_003559272.1| PREDICTED: polygalacturonase ADPG1-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|218199292|gb|EEC81719.1| hypothetical protein OsI_25337 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|356555461|ref|XP_003546050.1| PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query391
TAIR|locus:2077407439 QRT2 "QUARTET 2" [Arabidopsis 0.900 0.801 0.390 2e-72
TAIR|locus:2026795468 AT1G70500 [Arabidopsis thalian 0.918 0.767 0.405 6.7e-72
TAIR|locus:2016314444 AT1G80170 [Arabidopsis thalian 0.925 0.815 0.394 8.6e-72
TAIR|locus:2128023394 AT4G35670 [Arabidopsis thalian 0.902 0.895 0.395 9.9e-71
TAIR|locus:2016239336 AT1G80140 [Arabidopsis thalian 0.792 0.922 0.45 3e-69
TAIR|locus:2222657435 AT5G14650 [Arabidopsis thalian 0.902 0.811 0.410 6.3e-69
TAIR|locus:2028844460 AT1G23460 [Arabidopsis thalian 0.918 0.780 0.382 9.2e-68
TAIR|locus:2103478431 ADPG1 [Arabidopsis thaliana (t 0.892 0.809 0.384 4e-67
TAIR|locus:2155292381 AT5G44840 [Arabidopsis thalian 0.915 0.939 0.371 2.8e-66
TAIR|locus:2146370458 AT5G27530 [Arabidopsis thalian 0.933 0.796 0.378 4.5e-66
TAIR|locus:2077407 QRT2 "QUARTET 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 145/371 (39%), Positives = 213/371 (57%)

Query:    28 TFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSS 87
             +FNV  +GA  NGN DDS A+ KAW  AC +      ++ PK + +++  +TFSGPCKSS
Sbjct:    70 SFNVNTFGAKANGN-DDSKAFMKAWEAACSSTGIV-YIVAPKNRDYMLKAVTFSGPCKSS 127

Query:    88 NISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPG 147
              I  ++ G I+A + PS +  E   WI F N+  L + G G  DGNG  WW +SCK +P 
Sbjct:   128 LIIFKIYGRIEAWENPSDY-KERRHWIVFENVNNLRVEGGGRIDGNGHIWWPKSCKINPQ 186

Query:   148 KDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDG 207
               C   APTAV+F++CNN+ ++ I +E + Q+H+     ++V   +L++ SP  SPNTDG
Sbjct:   187 LPCLG-APTAVTFVECNNLRVSNIRLENAQQMHLTFQDCKNVKALNLMVTSPADSPNTDG 245

Query:   208 IHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKNGEEVKVE 252
             IH++ + ++ +  SI+                  T + CGPGHGISIGSLG++  E  V 
Sbjct:   246 IHVSGTQNILIQDSIVRTGDDCISIVSGSENVRATGITCGPGHGISIGSLGEDNSEAYVS 305

Query:   253 NITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAK 312
             N+ V       TTNG RIKTWQ G G  +++ F  +    V NPIII+Q YCD+ + C +
Sbjct:   306 NVVVNKATLIGTTNGVRIKTWQGGHGMAKNIIFQDIIMKNVTNPIIINQDYCDRVEACPE 365

Query:   313 TSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKN 372
               + V +S+V Y N  GTS+  +A+   CS N+ C  I ++N++L   T+     +SC N
Sbjct:   366 QKSAVQVSNVLYKNIQGTSSRPIAVKFVCSKNIPCRGISMQNVKLVDQTQQDVSKASCSN 425

Query:   373 AFGVAKGNCKP 383
                  +GN  P
Sbjct:   426 VKLDTRGNVSP 436
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS;IDA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0009830 "cell wall modification involved in abscission" evidence=TAS
GO:0009901 "anther dehiscence" evidence=IMP
GO:0010047 "fruit dehiscence" evidence=IMP
GO:0048235 "pollen sperm cell differentiation" evidence=IMP
GO:0045490 "pectin catabolic process" evidence=IMP
TAIR|locus:2026795 AT1G70500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016314 AT1G80170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128023 AT4G35670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016239 AT1G80140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2222657 AT5G14650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028844 AT1G23460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2103478 ADPG1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2155292 AT5G44840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2146370 AT5G27530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SFB7QRT2_ARATH3, ., 2, ., 1, ., 1, 50.39080.90020.8018yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh1_pm.C_scaffold_2001980
annotation not avaliable (374 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 6e-99
PLN03010409 PLN03010, PLN03010, polygalacturonase 2e-88
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 2e-83
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 1e-82
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 3e-81
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 4e-77
PLN02155394 PLN02155, PLN02155, polygalacturonase 2e-68
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 5e-10
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 0.004
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information 
 Score =  301 bits (771), Expect = 6e-99
 Identities = 145/378 (38%), Positives = 210/378 (55%), Gaps = 20/378 (5%)

Query: 29  FNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSN 88
            +V ++GA G+G +DD+ A+ +AW  AC +  +T  ++IP G TFLV PI   GPCK+  
Sbjct: 53  LHVGDFGAKGDGVTDDTQAFKEAWKMACSSKVKT-RIVIPAGYTFLVRPIDLGGPCKA-K 110

Query: 89  ISIQLSGTIKAPDGPSAWT-SEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPG 147
           +++Q+SGTI AP  P  W      +W+ F  +  L + G G  +G G +WW QSCK +  
Sbjct: 111 LTLQISGTIIAPKDPDVWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHT 170

Query: 148 KDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDG 207
             C   APTA++F +C ++ +  + V  S Q+HI     + V    L + +P TSPNTDG
Sbjct: 171 NPC-RHAPTAITFHKCKDLRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDG 229

Query: 208 IHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKNGEEVKVE 252
           IHI+ S  V +  SI+                 +  + CGPGHGISIGSLGK+    +V 
Sbjct: 230 IHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKSNSWSEVR 289

Query: 253 NITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAK 312
           +ITV       T NG RIKTWQ G G    + F  +    V NPIIIDQYYCD +  CA 
Sbjct: 290 DITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCAN 349

Query: 313 TSTGVHISDVRYLNATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKN 372
            ++ V + ++ +++  GTSAT+ AI   CS++  C  + LE+++L S+T G    S C  
Sbjct: 350 QTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWE 408

Query: 373 AFGVAKGNCKPKSCLKSN 390
           A+G + G   P  C   +
Sbjct: 409 AYGSSSGQVYPPPCFSDS 426

Length = 443
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 391
PLN02793443 Probable polygalacturonase 100.0
PLN03010409 polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.93
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.84
PLN03003456 Probable polygalacturonase At3g15720 99.77
PLN02218431 polygalacturonase ADPG 99.76
PLN02155394 polygalacturonase 99.76
PLN03010409 polygalacturonase 99.75
PLN02793443 Probable polygalacturonase 99.74
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.73
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.73
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.7
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.65
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 99.24
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.07
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.63
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 98.5
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.38
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.32
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.31
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.26
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.25
PLN02176340 putative pectinesterase 98.25
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.21
PLN02634359 probable pectinesterase 98.14
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.07
PLN02480343 Probable pectinesterase 98.06
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.05
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 97.99
PLN02682369 pectinesterase family protein 97.97
PLN02497331 probable pectinesterase 97.95
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 97.89
PLN02665366 pectinesterase family protein 97.85
PLN02773317 pectinesterase 97.8
PLN02671359 pectinesterase 97.67
PLN02432293 putative pectinesterase 97.66
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 97.65
PRK10531422 acyl-CoA thioesterase; Provisional 97.6
smart00656190 Amb_all Amb_all domain. 97.56
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.54
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.48
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.44
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.39
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.37
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.35
smart00656190 Amb_all Amb_all domain. 97.33
PLN02416541 probable pectinesterase/pectinesterase inhibitor 97.32
PLN02304379 probable pectinesterase 97.29
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.29
PLN02301548 pectinesterase/pectinesterase inhibitor 97.28
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.27
PLN02197588 pectinesterase 97.24
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.23
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.22
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.2
PLN02488509 probable pectinesterase/pectinesterase inhibitor 97.18
PF1221867 End_N_terminal: N terminal extension of bacterioph 97.17
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.16
PLN02314586 pectinesterase 97.13
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.07
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.06
PLN02916502 pectinesterase family protein 97.06
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.03
PLN02313587 Pectinesterase/pectinesterase inhibitor 96.99
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.94
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 96.9
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.61
COG3420 408 NosD Nitrous oxidase accessory protein [Inorganic 96.38
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 96.03
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.09
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 92.4
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.05
PLN02773317 pectinesterase 89.65
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 89.59
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 87.58
PLN02634359 probable pectinesterase 87.15
PLN02468565 putative pectinesterase/pectinesterase inhibitor 85.11
PF09251 549 PhageP22-tail: Salmonella phage P22 tail-spike; In 85.11
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 84.36
PLN02170529 probable pectinesterase/pectinesterase inhibitor 82.07
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 80.53
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 80.45
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=3.9e-72  Score=553.19  Aligned_cols=357  Identities=40%  Similarity=0.816  Sum_probs=326.3

Q ss_pred             CCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEEecCCCCC
Q 047738           25 DQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTIKAPDGPS  104 (391)
Q Consensus        25 ~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l~~~~~~~  104 (391)
                      ..++++|+||||+|||.+|||+|||+||++||+.. +|++|+||+|++|++++|.|.|+||| +++|+++|+|+++.++.
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~~-ggg~v~vP~G~~fl~~~i~l~gpcks-~vtL~l~g~l~~~~d~~  126 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSSK-VKTRIVIPAGYTFLVRPIDLGGPCKA-KLTLQISGTIIAPKDPD  126 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhccC-CCCEEEECCCceEEEEEEEECCccCC-CeEEEEEEEEEccCChH
Confidence            35789999999999999999999999999778764 78999999995599999999999999 99999999999999999


Q ss_pred             CCCC-CCcccEEEEeeeceEEeeeeEEeCCCchhcccccCC---CCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCcee
Q 047738          105 AWTS-EIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKH---HPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVH  180 (391)
Q Consensus       105 ~~~~-~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~---~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~  180 (391)
                      +|.. ....||.+.+.+|++|+|.|+|||+|+.||....+.   .+..    .||++|.|.+|+|++|++++++|+|.|+
T Consensus       127 ~w~~~~~~~~i~~~~~~ni~ItG~G~IDG~G~~ww~~~~~~~~~~~~~----~rP~~i~f~~~~nv~v~gitl~nSp~~~  202 (443)
T PLN02793        127 VWKGLNPRKWLYFHGVNHLTVEGGGTVNGMGHEWWAQSCKINHTNPCR----HAPTAITFHKCKDLRVENLNVIDSQQMH  202 (443)
T ss_pred             HccCCCCceEEEEecCceEEEEeceEEECCCcccccccccccCCCCcc----CCceEEEEEeeccEEEECeEEEcCCCeE
Confidence            9963 445799999999999999999999999999753321   2222    3899999999999999999999999999


Q ss_pred             EEEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE---------------EEeEEEcCCceeEEcccCCC
Q 047738          181 IVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKN  245 (391)
Q Consensus       181 i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~---------------i~n~~~~~g~gi~igs~~~~  245 (391)
                      +++..|++|+|++++|.++...+|+||||+.+|+||+|+||+|++               |+|+.|.+||||+|||++++
T Consensus       203 i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSlg~~  282 (443)
T PLN02793        203 IAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSLGKS  282 (443)
T ss_pred             EEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecccCc
Confidence            999999999999999999888899999999999999999999998               89999999999999999988


Q ss_pred             CCcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEE
Q 047738          246 GEEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYL  325 (391)
Q Consensus       246 ~~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~  325 (391)
                      +..+.++||+|+||+|.++.+|++||++.++.|.|+||+|+||+|+++.+||.|++.|++...+|.+....+.|+||+|+
T Consensus       283 ~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~  362 (443)
T PLN02793        283 NSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVENISFV  362 (443)
T ss_pred             CCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEeEEEE
Confidence            77789999999999999999999999999989999999999999999999999999998766678777788999999999


Q ss_pred             eEEEeecCCeeEEEecCCCCceecEEEEeEEEEecCCCCccceeeecccccccCeecCCCCCC
Q 047738          326 NATGTSATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVAKGNCKPKSCLK  388 (391)
Q Consensus       326 ni~~~~~~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~n~~~~~~~~~~~~~~~~  388 (391)
                      ||+++.....++.+.|++..||+||+|+||+++..+ |......|.|++|...+.+.|+||+.
T Consensus       363 nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~-g~~~~~~C~n~~g~~~~~~~p~~C~~  424 (443)
T PLN02793        363 HIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSST-GDFTESFCWEAYGSSSGQVYPPPCFS  424 (443)
T ss_pred             EEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecC-CCCCCcEEEccEEeECCeEcCCcccc
Confidence            999998656689999999999999999999999886 44667899999999999999999984

>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 2e-14
1nhc_A336 Structural Insights Into The Processivity Of Endopo 7e-13
1czf_A362 Endo-Polygalacturonase Ii From Aspergillus Niger Le 3e-10
1rmg_A422 Rhamnogalacturonase A From Aspergillus Aculeatus Le 7e-10
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 3e-09
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 2e-08
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 3e-08
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 1e-07
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure 
Iteration: 1

 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 108/264 (40%), Gaps = 41/264 (15%)
Query: 124 INGRGLFDGNGQ--------KWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVER 175
           I G G  DG G          WW+ +      K   +  P  +   +  N  +  + +  
Sbjct: 113 IYGPGTIDGQGGVKLQDKKVSWWELAADAKV-KKLKQNTPRLIQINKSKNFTLYNVSLIN 171
Query: 176 SPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIA----------- 224
           SP  H+V             I +P T+ NTDGI    S ++++  S IA           
Sbjct: 172 SPNFHVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAY 231
Query: 225 ---------AVTYVNCGPGHGISIGSLGKNGEEVKVENITVRHVNFCKTTNGARIKTWQA 275
                    ++ + + G GHG+SIGS     E + V N+TV  +    TTNG RIK+ ++
Sbjct: 232 KGRAETRNISILHNDFGTGHGMSIGS-----ETMGVYNVTVDDLKMNGTTNGLRIKSDKS 286
Query: 276 GKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDV 335
             G V  V +S +    V  PI+ID  Y  ++       + +   DV       TS T  
Sbjct: 287 AAGVVNGVRYSNVVMKNVAKPIVIDTVYEKKEGSNVPDWSDITFKDV-------TSETKG 339
Query: 336 AINLDCSNNVACTDIKLENIELQS 359
            + L+  N     ++ ++N++L S
Sbjct: 340 VVVLNGENAKKPIEVTMKNVKLTS 363
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure
>pdb|1CZF|A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger Length = 362 Back     alignment and structure
>pdb|1RMG|A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus Length = 422 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query391
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 1e-102
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 3e-92
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 2e-89
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 9e-82
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 1e-79
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 1e-79
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 2e-79
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 9e-76
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 9e-73
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 8e-70
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 8e-22
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 3e-20
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 7e-19
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 3e-15
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-09
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 5e-08
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 8e-04
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
 Score =  308 bits (791), Expect = e-102
 Identities = 84/383 (21%), Positives = 141/383 (36%), Gaps = 48/383 (12%)

Query: 27  NTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKS 86
            T N+L+YGAV + ++D   A   AW  ACK+      + IP G   L   +T +G    
Sbjct: 19  KTCNILSYGAVADNSTDVGPAITSAWA-ACKSGG---LVYIPSGNYALNTWVTLTGGS-- 72

Query: 87  SNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHP 146
              +IQL G I      S     +       +    +   +G   G G  +  +      
Sbjct: 73  -ATAIQLDGIIYRTGTASGN---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTY--- 125

Query: 147 GKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTD 206
                      +      +  +++I +  +P  H  +D   D    ++ I         D
Sbjct: 126 -------GARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLD 177

Query: 207 GIHIARSHDVSVHTSIIA---------------AVTYVNCGPGHGISIGSLGKNGEEVKV 251
           GI +  S ++ VH   +                 V  + C    G ++GSLG + +   V
Sbjct: 178 GIDVWGS-NIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---V 233

Query: 252 ENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCA 311
            +I  R+V    +     IK+   G G V +V             + ID Y+       A
Sbjct: 234 TDIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSM---TA 289

Query: 312 KTSTGVHISDVRYLNATGTS---ATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLS 368
               GV ++++   N  GT    AT   I + CS+   CTD+ LE+I + + + G   L 
Sbjct: 290 VAGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES-GSSELY 348

Query: 369 SCKNAFGVAKGNCKPKSCLKSNS 391
            C++A+G         S     +
Sbjct: 349 LCRSAYGSGYCLKDSSSHTSYTT 371
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.96
2vbk_A 514 Tailspike-protein; viral adhesion protein, viral p 99.94
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.86
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.86
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.81
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.8
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.8
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.79
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.78
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.77
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.74
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.73
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.73
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.6
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.57
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.54
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.46
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.37
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.3
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.07
1dbg_A 506 Chondroitinase B; beta helix, polysaccharide lyase 98.97
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 98.97
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 98.93
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 98.87
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.43
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.25
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.22
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.22
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.22
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.93
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.91
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.88
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.88
2x3h_A 542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 97.83
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.81
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.79
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 97.7
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.7
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 97.68
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 97.59
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.58
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.52
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.49
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 97.44
2inu_A410 Insulin fructotransferase; right-handed parallel b 97.38
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.36
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.26
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.24
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.05
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 96.81
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 96.68
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.66
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 96.52
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 96.5
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 95.5
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 93.88
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 92.73
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 91.91
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 91.77
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 91.37
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 90.06
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.4e-59  Score=465.51  Aligned_cols=331  Identities=23%  Similarity=0.355  Sum_probs=286.5

Q ss_pred             cccccCCCCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEeeeeecCCCCCcceEEEEceEE
Q 047738           18 HINVNADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKSSNISIQLSGTI   97 (391)
Q Consensus        18 ~~~~~~~~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~~i~l~~~~~s~~~~l~l~g~l   97 (391)
                      .++.+..++.+++|+||||+|||.+|||+|||+||++ |++. +|++|+||+| +|++++|.|+    | +++|+++|+|
T Consensus        17 ~~~~p~~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~-c~~~-ggg~v~vP~G-~yl~~~l~l~----s-~v~l~l~gtL   88 (448)
T 3jur_A           17 HVREPQIPDREVNLLDFGARGDGRTDCSESFKRAIEE-LSKQ-GGGRLIVPEG-VFLTGPIHLK----S-NIELHVKGTI   88 (448)
T ss_dssp             HCCCCCCCSCEEEGGGGTCCCEEEEECHHHHHHHHHH-HHHH-TCEEEEECSS-EEEESCEECC----T-TEEEEESSEE
T ss_pred             hccCCCCCCcEEEEEecccCCCCCeecHHHHHHHHHh-hhhc-CCeEEEECCC-cEEEeeeEeC----C-CcEEEEEEEE
Confidence            3345566788999999999999999999999999985 5432 6899999999 9999999997    7 9999999999


Q ss_pred             ecCCCCCCC-CC-----------CCcccEEEEeeeceEEeeeeEEeCCC--chhcccccCC-------------------
Q 047738           98 KAPDGPSAW-TS-----------EIGRWIAFGNITGLNINGRGLFDGNG--QKWWDQSCKH-------------------  144 (391)
Q Consensus        98 ~~~~~~~~~-~~-----------~~~~~i~~~~~~nv~I~G~G~Idg~g--~~~~~~~~~~-------------------  144 (391)
                      ++++++.+| +.           ...+||.+.+++||+|+|.|+|||+|  +.||......                   
T Consensus        89 ~~s~d~~~y~p~~~~~~~G~~~~~~~~lI~~~~~~ni~ItG~GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~  168 (448)
T 3jur_A           89 KFIPDPERYLPVVLTRFEGIELYNYSPLVYALDCENVAITGSGVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLK  168 (448)
T ss_dssp             EECCCGGGGCSCEEEEETTEEEEESCCSEEEESCEEEEEESSCEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHH
T ss_pred             EecCCHHHhCcccccccccccccCccceEEEeCcEeeEEEEeEEEECCCCchhhhhhcccccccccccccccccchhhhh
Confidence            999999888 21           13478999999999999999999999  7899743210                   


Q ss_pred             ------CCCC-----CCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeEEEeccccEEEEeEEEeCCCCCCCCceEeecCc
Q 047738          145 ------HPGK-----DCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTDGIHIARS  213 (391)
Q Consensus       145 ------~~~~-----~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s  213 (391)
                            .|.+     .....||++|.|.+|+|++|++++++|+|.|++++..|++++|++++|.++  ++|+|||++.+|
T Consensus       169 ~~~~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s  246 (448)
T 3jur_A          169 EMAERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESC  246 (448)
T ss_dssp             HHHHHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSC
T ss_pred             hhhcccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCC
Confidence                  0000     123469999999999999999999999999999999999999999999996  589999999999


Q ss_pred             ccEEEEeeEEEE--------------------------EEeEEE--cCCc-eeEEcccCCCCCcCcEEEEEEEeeEEeCC
Q 047738          214 HDVSVHTSIIAA--------------------------VTYVNC--GPGH-GISIGSLGKNGEEVKVENITVRHVNFCKT  264 (391)
Q Consensus       214 ~nv~I~n~~i~~--------------------------i~n~~~--~~g~-gi~igs~~~~~~~~~~~ni~i~N~~~~~~  264 (391)
                      +||+|+||+|++                          |+||++  ..+| ||+|||++    .+.++||+|+||+|.++
T Consensus       247 ~nV~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~----~~~v~nV~v~n~~~~~t  322 (448)
T 3jur_A          247 KYMLIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEM----SGGVRNVVARNNVYMNV  322 (448)
T ss_dssp             EEEEEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSC----TTCEEEEEEESCEEESC
T ss_pred             cCEEEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcc----cCcEEEEEEEEEEEecc
Confidence            999999999986                          678888  6777 89999986    57899999999999999


Q ss_pred             CeEEEEEEeCCCCceEEEEEEEEEEEccCCceE-EEEeeeCCCCCcCCCCCcceEEEEEEEEeEEEeecCCeeEEEecCC
Q 047738          265 TNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPI-IIDQYYCDQKDVCAKTSTGVHISDVRYLNATGTSATDVAINLDCSN  343 (391)
Q Consensus       265 ~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~~Itf~ni~~~~~~~~~i~i~~~~  343 (391)
                      .+|++||++.+++|.|+||+|+||+++++.+++ .|++.|+..     .....+.|+||+|+||+++. ...++.+.|.+
T Consensus       323 ~~GirIKt~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~-----~~~~~~~i~nI~~~NI~~t~-~~~~i~i~g~~  396 (448)
T 3jur_A          323 ERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNE-----EGEYLPVVRSVFVKNLKATG-GKYAVRIEGLE  396 (448)
T ss_dssp             SEEEEEECCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGC-----CCSCCCEEEEEEEESCEEEE-CSEEEEEECBT
T ss_pred             cceEEEEEEcCCCceEeeEEEEEEEEECCccccEEEEeeccCC-----CCCCCceEEEEEEEeEEEEe-cceEEEEEeCC
Confidence            999999999888899999999999999999988 899988754     12345689999999999998 45799999999


Q ss_pred             CCceecEEEEeEEEEecCCCCccceeeec
Q 047738          344 NVACTDIKLENIELQSATEGKGVLSSCKN  372 (391)
Q Consensus       344 ~~~i~~i~~~ni~~~~~~~~~~~~~~c~n  372 (391)
                      ..||++|+|+||+++...    ....|.+
T Consensus       397 ~~p~~~I~~~nv~i~~~~----~~~~~~~  421 (448)
T 3jur_A          397 NDYVKDILISDTIIEGAK----ISVLLEF  421 (448)
T ss_dssp             TBCEEEEEEEEEEEESCS----EEEEEEE
T ss_pred             CCCEeeEEEEEEEEEccc----cceeEec
Confidence            999999999999998765    3355665
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 391
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 2e-69
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 8e-59
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 2e-57
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 1e-50
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-47
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 7e-47
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 3e-45
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 5e-42
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  222 bits (567), Expect = 2e-69
 Identities = 82/377 (21%), Positives = 137/377 (36%), Gaps = 46/377 (12%)

Query: 27  NTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVHPITFSGPCKS 86
            T N+L+YGAV + ++D   A   AW  ACK+      + IP G   L   +T +G    
Sbjct: 19  KTCNILSYGAVADNSTDVGPAITSAW-AACKSGG---LVYIPSGNYALNTWVTLTGGS-- 72

Query: 87  SNISIQLSGTIKAPDGPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHP 146
              +IQL G I      S     +       +    +   +G   G G  +  +      
Sbjct: 73  -ATAIQLDGIIYRTGTASGN---MIAVTDTTDFELFSSTSKGAVQGFGYVYHAEGTY--- 125

Query: 147 GKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHIVVDYSQDVHFKSLIIDSPETSPNTD 206
                      +      +  +++I +  +P  H  +D   D    ++ I         D
Sbjct: 126 -------GARILRLTDVTHFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGG-NEGGLD 177

Query: 207 GIHIARSHDVSVHTSIIA--------------AVTYVNCGPGHGISIGSLGKNGEEVKVE 252
           GI +  S+       +                 V  + C    G ++GSLG + +   V 
Sbjct: 178 GIDVWGSNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGADTD---VT 234

Query: 253 NITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAK 312
           +I  R+V    +     IK+   G G V +V             + ID Y+       A 
Sbjct: 235 DIVYRNVYTWSSNQMYMIKSN-GGSGTVSNVLLENFIGHGNAYSLDIDGYWSSM---TAV 290

Query: 313 TSTGVHISDVRYLNATGTS---ATDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSS 369
              GV ++++   N  GT    AT   I + CS+   CTD+ LE+I + + + G   L  
Sbjct: 291 AGDGVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES-GSSELYL 349

Query: 370 CKNAFGVAKGNCKPKSC 386
           C++A+G         S 
Sbjct: 350 CRSAYGSGYCLKDSSSH 366
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query391
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.75
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.74
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.73
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.7
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.69
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.69
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.67
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.51
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.39
d1ofla_ 481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.43
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.08
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 97.7
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.49
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.45
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.42
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.31
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.14
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.05
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.98
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 96.82
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 96.8
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.71
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 96.69
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 96.28
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 95.55
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 95.25
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 94.84
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 94.67
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 88.28
d1v0ea1 516 Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 34 84.83
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.1e-57  Score=447.51  Aligned_cols=324  Identities=25%  Similarity=0.411  Sum_probs=279.3

Q ss_pred             CCCCceEEEeccCccCCCCchhHHHHHHHHHHHhhcCCCCCEEEecCCCeEEEe-eeeecCCCCCcceEEEEceEEecCC
Q 047738           23 ADDQNTFNVLNYGAVGNGNSDDSLAYAKAWNDACKANAQTPTMIIPKGKTFLVH-PITFSGPCKSSNISIQLSGTIKAPD  101 (391)
Q Consensus        23 ~~~~~~~~v~dfGa~~dg~tddt~aiq~Ai~~a~~~~~~g~~v~iP~G~~y~~~-~i~l~~~~~s~~~~l~l~g~l~~~~  101 (391)
                      +...+++||+||||+|||++|||+|||+||+ ||+.   |++|+||+| +|++. ++.|+++  + +++|+++|+|+++.
T Consensus        15 ~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~-ac~~---gg~V~iP~G-ty~l~~~i~l~g~--~-~~~l~~~G~i~~~~   86 (422)
T d1rmga_          15 KGATKTCNILSYGAVADNSTDVGPAITSAWA-ACKS---GGLVYIPSG-NYALNTWVTLTGG--S-ATAIQLDGIIYRTG   86 (422)
T ss_dssp             HHHHCEEEGGGGTCCCSSSSBCHHHHHHHHH-HHTB---TCEEEECSS-EEEECSCEEEESC--E-EEEEEECSEEEECC
T ss_pred             cCCCcEEEEecCCCCCCCCccCHHHHHHHHH-hcCC---CCEEEECCC-cEEEeCcEEEcCC--C-ceEEEEeEEEEecc
Confidence            3346799999999999999999999999997 7875   889999999 99885 5889865  5 89999999998866


Q ss_pred             CCCCCCCCCcccEEEEeeeceEEeeeeEEeCCCchhcccccCCCCCCCCCCCCCeeEEEeeeCcEEEeeeEEEcCCceeE
Q 047738          102 GPSAWTSEIGRWIAFGNITGLNINGRGLFDGNGQKWWDQSCKHHPGKDCSERAPTAVSFIQCNNVHINEIYVERSPQVHI  181 (391)
Q Consensus       102 ~~~~~~~~~~~~i~~~~~~nv~I~G~G~Idg~g~~~~~~~~~~~~~~~~~~~rp~~i~~~~~~nv~I~~i~i~~~~~~~i  181 (391)
                      ....|.   ..+....+.+.+.+.|.|+|||+|..||....          .+|++++|.+|+|++|++++++|++.|++
T Consensus        87 ~~~~~~---~~~~~~~~~~~~~~~g~G~IdG~G~~~~~~~~----------~~p~~l~~~~~~n~~i~git~~nsp~~~i  153 (422)
T d1rmga_          87 TASGNM---IAVTDTTDFELFSSTSKGAVQGFGYVYHAEGT----------YGARILRLTDVTHFSVHDIILVDAPAFHF  153 (422)
T ss_dssp             CCSSEE---EEEEEEEEEEEECSSSCCEEECCTHHHHTTTC----------CCCEEEEEEEEEEEEEEEEEEECCSSCSE
T ss_pred             CCccCE---EEeccCccEEEEEeecceEEecCcceecCCCC----------CCCcEEEEEeeeeeEEECcEecCCCceEE
Confidence            544321   22333444556677888999999999998421          28999999999999999999999999999


Q ss_pred             EEeccccEEEEeEEEeCCCCCCCCceEeecCcccEEEEeeEEEE---------------EEeEEEcCCceeEEcccCCCC
Q 047738          182 VVDYSQDVHFKSLIIDSPETSPNTDGIHIARSHDVSVHTSIIAA---------------VTYVNCGPGHGISIGSLGKNG  246 (391)
Q Consensus       182 ~~~~~~~v~i~n~~I~~~~~~~~~DGi~~~~s~nv~I~n~~i~~---------------i~n~~~~~g~gi~igs~~~~~  246 (391)
                      ++..|++++|+|++|.++ ..+|+|||++.+ +||+|+||.|.+               |+|+.|..+||+.|||++.  
T Consensus       154 ~i~~c~~v~i~nv~I~~~-~~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~s~nI~i~n~~c~~g~GisiGs~g~--  229 (422)
T d1rmga_         154 TMDTCSDGEVYNMAIRGG-NEGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSPANNILVESIYCNWSGGCAMGSLGA--  229 (422)
T ss_dssp             EEEEEEEEEEEEEEEECC-SSTTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEEEEEEEEEEEEEESSSEEEEEEECT--
T ss_pred             EEeccccEEEEeeEEcCC-CCCccceEeecc-cEEEEEeeEEEcCCCccccCCCCccEEEEeeEEccccceeEeeccC--
Confidence            999999999999999986 457999999976 589999999987               8899999999999999863  


Q ss_pred             CcCcEEEEEEEeeEEeCCCeEEEEEEeCCCCceEEEEEEEEEEEccCCceEEEEeeeCCCCCcCCCCCcceEEEEEEEEe
Q 047738          247 EEVKVENITVRHVNFCKTTNGARIKTWQAGKGQVQHVEFSYMNFTEVQNPIIIDQYYCDQKDVCAKTSTGVHISDVRYLN  326 (391)
Q Consensus       247 ~~~~~~ni~i~N~~~~~~~~gi~i~~~~~~~g~v~nV~~~ni~i~~~~~~i~i~~~~~~~~~~~~~~~~~~~i~~Itf~n  326 (391)
                       ...++||+|+||++.++..+++||++. +.|.|+||+|+||+++++.+||.|++.|+....   ....+..|+||+|+|
T Consensus       230 -~~~V~nV~v~n~~~~~s~~g~~ik~~~-g~G~V~nI~f~Ni~~~nv~~pI~Id~~y~~~~~---~~~~~v~isnIt~~N  304 (422)
T d1rmga_         230 -DTDVTDIVYRNVYTWSSNQMYMIKSNG-GSGTVSNVLLENFIGHGNAYSLDIDGYWSSMTA---VAGDGVQLNNITVKN  304 (422)
T ss_dssp             -TEEEEEEEEEEEEEESSSCSEEEEEBB-CCEEEEEEEEEEEEEEEESCSEEEETBCTTSCC---BSSSCCEEEEEEEEE
T ss_pred             -CCCEEEEEEEeEEEeCCCceEEEEEcC-CCceecceEEEEEEEecccccEEEecccCCCCC---CCCCCeEEEEEEEEe
Confidence             457999999999999999999999864 468999999999999999999999999987544   234467899999999


Q ss_pred             EEEeec---CCeeEEEecCCCCceecEEEEeEEEEecCCCCccceeeecccccc
Q 047738          327 ATGTSA---TDVAINLDCSNNVACTDIKLENIELQSATEGKGVLSSCKNAFGVA  377 (391)
Q Consensus       327 i~~~~~---~~~~i~i~~~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~n~~~~~  377 (391)
                      |+++..   ...++++.|++..||+||+|+||+++.++ |..+.+.|+|++|++
T Consensus       305 i~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~~-g~~~~~~C~na~G~~  357 (422)
T d1rmga_         305 WKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTES-GSSELYLCRSAYGSG  357 (422)
T ss_dssp             EEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEESS-SSCEEEEEESEEEES
T ss_pred             EEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcCC-CCCcceEEECceeeE
Confidence            999874   34689999999999999999999999887 677788999999987
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1v0ea1 b.68.1.2 (A:245-760) Endo-alpha-sialidase {Bacteriophage K1F [TaxId: 344021]} Back     information, alignment and structure