Citrus Sinensis ID: 047757

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVCEGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDVEYEDDDVPASDS
cHHHHHHHHHHHHccccccEEEEEEcccccccccccccccccHHHHHHcccEEEEEcHHHHHHHHHHccccccccccccHHHHHHHHHcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHcccccccEEEcccccccHHHHHHHccccccHHHHHHHHHHHHHccccccccccccccEEEEcccccEEEEEEEcccccEEEccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccc
cHHHHHHHHHHHccccccEEEEEEcccccccEEEccccHEEEHEEEEcccccEEEEccHHHHHHHHHccccccccccccHHHHHHHHHHHHcEEEcccccccccHHHHHHHccccccEcccccccccEEccccHHHHHccHHHHHHHHccHHHHHHccccccccEEEEEEEEcccccHHHHHHHHHHHHccccHHHHHHHHHHHEEHEEccccHHHHEccccccEEEEEccccccHHHEEEEEcccHHHHHHHHHHHHHHcHHHHHccccccccc
MGTLLISKIREEYPERIMLTFsvfrspkvsdivvepynaTLSVHQLVENADECMVLNNEALYDICLRTLklttpavigdlnhlisgtmsgvtcclrfpgqlnsDLRKLVVnlipfprlhfamvgfapltsrgsqqyqslsvpeithqMWDDRNMMCAadlrhgryltastmfrgkMSAKEVDEQMINVqnknsssaryfGLGFLALVVLRGSTSyfvewipnnvkssvcegmdemEFTEAESNMNDLVAEYQQYQdatidedveyedddvpasds
MGTLLISkireeyperIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVCEGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDVEYEDDDVPASDS
MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVCEGMDEMEFTEAESNMNDLVAEYQQYQDATIdedveyedddvPASDS
****LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFR**********************ARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVCEG********************************************
*GTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVCEGMDEMEFTEAESNMNDLVAEYQQYQDA******************
MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVCEGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDVEY**********
*GTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVCEGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDVEYEDD*******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVCEGMDEMExxxxxxxxxxxxxxxxxxxxxTIDEDVEYEDDDVPASDS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query275 2.2.26 [Sep-21-2011]
Q9ZPN9448 Tubulin beta-2 chain OS=E N/A no 0.883 0.542 0.703 1e-118
P18025446 Tubulin beta-1 chain OS=Z N/A no 0.861 0.531 0.700 1e-116
Q39697444 Tubulin beta-2 chain OS=D N/A no 0.901 0.558 0.674 1e-115
P25862386 Tubulin beta-1 chain (Fra N/A no 0.847 0.603 0.703 1e-115
P18026444 Tubulin beta-2 chain OS=Z N/A no 0.847 0.524 0.703 1e-114
P29502440 Tubulin beta-3 chain (Fra N/A no 0.847 0.529 0.703 1e-114
P29514449 Tubulin beta-6 chain OS=A yes no 0.847 0.518 0.703 1e-114
Q9ZRA8447 Tubulin beta-5 chain OS=T N/A no 0.847 0.521 0.706 1e-114
Q9ZRB1447 Tubulin beta-2 chain OS=T N/A no 0.847 0.521 0.703 1e-114
P93176447 Tubulin beta chain OS=Hor N/A no 0.847 0.521 0.703 1e-114
>sp|Q9ZPN9|TBB2_ELEIN Tubulin beta-2 chain OS=Eleusine indica GN=TUBB2 PE=2 SV=1 Back     alignment and function desciption
 Score =  425 bits (1092), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/310 (70%), Positives = 229/310 (73%), Gaps = 67/310 (21%)

Query: 5   LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
           LISKIREEYP+R+MLTFSVF SPKVSD VVEPYNATLSVHQLVENADECMVL+NEALYDI
Sbjct: 151 LISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 210

Query: 65  CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
           C RTLKLTTP+  GDLNHLIS TMSGVTCCLRFPGQLNSDLRKL VNLIPFPRLHF MVG
Sbjct: 211 CFRTLKLTTPS-FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVG 269

Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
           FAPLTSRGSQQY++L+VPE+T QMWD +NMMCAAD RHGRYLTAS MFRGKMS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ 329

Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
           MINVQNKNS                    SYFVEWIPNNVKSSVC               
Sbjct: 330 MINVQNKNS--------------------SYFVEWIPNNVKSSVCDIPPRGLSMASTFIG 369

Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
                                          EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

Query: 259 IDEDVEYEDD 268
            DED EYED+
Sbjct: 430 ADEDGEYEDE 439
Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Eleusine indica (taxid: 29674)
>sp|P18025|TBB1_MAIZE Tubulin beta-1 chain OS=Zea mays GN=TUBB1 PE=2 SV=1 Back     alignment and function description
>sp|Q39697|TBB2_DAUCA Tubulin beta-2 chain OS=Daucus carota GN=TUBB2 PE=2 SV=1 Back     alignment and function description
>sp|P25862|TBB1_AVESA Tubulin beta-1 chain (Fragment) OS=Avena sativa GN=TUBB1 PE=2 SV=1 Back     alignment and function description
>sp|P18026|TBB2_MAIZE Tubulin beta-2 chain OS=Zea mays GN=TUBB2 PE=2 SV=1 Back     alignment and function description
>sp|P29502|TBB3_PEA Tubulin beta-3 chain (Fragment) OS=Pisum sativum GN=TUBB3 PE=2 SV=1 Back     alignment and function description
>sp|P29514|TBB6_ARATH Tubulin beta-6 chain OS=Arabidopsis thaliana GN=TUBB6 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZRA8|TBB5_WHEAT Tubulin beta-5 chain OS=Triticum aestivum GN=TUBB5 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZRB1|TBB2_WHEAT Tubulin beta-2 chain OS=Triticum aestivum GN=TUBB2 PE=2 SV=1 Back     alignment and function description
>sp|P93176|TBB_HORVU Tubulin beta chain OS=Hordeum vulgare GN=TUBB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
449503107 445 PREDICTED: tubulin beta-1 chain-like [Cu 0.883 0.546 0.703 1e-117
449439455 445 PREDICTED: tubulin beta-1 chain-like [Cu 0.883 0.546 0.703 1e-117
166343833 452 beta-tubulin 13 [Gossypium hirsutum] 0.883 0.537 0.703 1e-117
8928425 448 RecName: Full=Tubulin beta-2 chain; AltN 0.883 0.542 0.703 1e-116
255538950 448 tubulin beta chain, putative [Ricinus co 0.887 0.544 0.704 1e-116
326503528300 predicted protein [Hordeum vulgare subsp 0.861 0.79 0.703 1e-115
223948947299 unknown [Zea mays] 0.861 0.792 0.707 1e-115
413943394299 hypothetical protein ZEAMMB73_301405 [Ze 0.861 0.792 0.703 1e-115
332713691304 beta-tubulin [Deschampsia antarctica] 0.861 0.779 0.703 1e-115
168029899 443 predicted protein [Physcomitrella patens 0.883 0.548 0.693 1e-115
>gi|449503107|ref|XP_004161837.1| PREDICTED: tubulin beta-1 chain-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 218/310 (70%), Positives = 230/310 (74%), Gaps = 67/310 (21%)

Query: 5   LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
           LISKIREEYP+R+MLTFSVF SPKVSD VVEPYNATLSVHQLVENADECMVL+NEALYDI
Sbjct: 151 LISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDI 210

Query: 65  CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
           C RTLKLTTP+  GDLNHLIS TMSGVTCCLRFPGQLNSDLRKL VNLIPFPRLHF MVG
Sbjct: 211 CFRTLKLTTPS-FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVG 269

Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
           FAPLTSRGSQQY++L+VPE+T QMWD +NMMCAAD RHGRYLTAS MFRGKMS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKEVDEQ 329

Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
           M+NVQNKNS                    SYFVEWIPNNVKSSVC               
Sbjct: 330 MMNVQNKNS--------------------SYFVEWIPNNVKSSVCDIPPKGFPMASTFVG 369

Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
                                          EGMDEMEFTEAESNMNDLVAEYQQYQDAT
Sbjct: 370 NSTSIQEMFRRVSEQFTAMFRRKAFLYWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDAT 429

Query: 259 IDEDVEYEDD 268
            DED++YEDD
Sbjct: 430 ADEDLDYEDD 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449439455|ref|XP_004137501.1| PREDICTED: tubulin beta-1 chain-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|166343833|gb|ABY86659.1| beta-tubulin 13 [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|8928425|sp|Q9ZPN9.1|TBB2_ELEIN RecName: Full=Tubulin beta-2 chain; AltName: Full=Beta-2-tubulin gi|4415992|gb|AAD20179.1| beta-tubulin 2 [Eleusine indica] Back     alignment and taxonomy information
>gi|255538950|ref|XP_002510540.1| tubulin beta chain, putative [Ricinus communis] gi|223551241|gb|EEF52727.1| tubulin beta chain, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|326503528|dbj|BAJ86270.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
>gi|223948947|gb|ACN28557.1| unknown [Zea mays] Back     alignment and taxonomy information
>gi|413943394|gb|AFW76043.1| hypothetical protein ZEAMMB73_301405 [Zea mays] Back     alignment and taxonomy information
>gi|332713691|gb|AEE98362.1| beta-tubulin [Deschampsia antarctica] Back     alignment and taxonomy information
>gi|168029899|ref|XP_001767462.1| predicted protein [Physcomitrella patens subsp. patens] gi|37038246|gb|AAQ88118.1| beta-tubulin 5 [Physcomitrella patens] gi|162681358|gb|EDQ67786.1| predicted protein [Physcomitrella patens subsp. patens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
TAIR|locus:2177003449 TUB6 "beta-6 tubulin" [Arabido 0.701 0.429 0.886 1.7e-111
TAIR|locus:2172254450 TUB2 "tubulin beta chain 2" [A 0.701 0.428 0.886 2.2e-111
TAIR|locus:2172214450 TUB3 "tubulin beta chain 3" [A 0.701 0.428 0.886 2.2e-111
TAIR|locus:505006632449 TUB8 "tubulin beta 8" [Arabido 0.701 0.429 0.886 5.7e-111
TAIR|locus:2043082449 TUB7 "tubulin beta-7 chain" [A 0.701 0.429 0.871 3.1e-110
TAIR|locus:2133084444 TUB9 "tubulin beta-9 chain" [A 0.701 0.434 0.865 5e-110
TAIR|locus:2158755444 TUB4 "tubulin beta chain 4" [A 0.701 0.434 0.855 2.7e-109
TAIR|locus:2005724447 TUB1 "tubulin beta-1 chain" [A 0.701 0.431 0.871 3.5e-109
TAIR|locus:2198661449 TUB5 "tubulin beta-5 chain" [A 0.701 0.429 0.855 1.2e-108
GENEDB_PFALCIPARUM|PF10_0084445 PF10_0084 "tubulin beta chain, 0.701 0.433 0.824 8.1e-104
TAIR|locus:2177003 TUB6 "beta-6 tubulin" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 894 (319.8 bits), Expect = 1.7e-111, Sum P(3) = 1.7e-111
 Identities = 172/194 (88%), Positives = 181/194 (93%)

Query:     1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEA 60
             MGTLLISKIREEYP+R+MLTFSVF SPKVSD VVEPYNATLSVHQLVENADECMVL+NEA
Sbjct:   147 MGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEA 206

Query:    61 LYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHF 120
             LYDIC RTLKLTTP+  GDLNHLIS TMSGVTCCLRFPGQLNSDLRKL VNLIPFPRLHF
Sbjct:   207 LYDICFRTLKLTTPS-FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265

Query:   121 AMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKE 180
              MVGFAPLTSRGSQQY++L+VPE+T QMWD +NMMCAAD RHGRYLTAS MFRGKMS KE
Sbjct:   266 FMVGFAPLTSRGSQQYRALTVPELTQQMWDSKNMMCAADPRHGRYLTASAMFRGKMSTKE 325

Query:   181 VDEQMINVQNKNSS 194
             VDEQMINVQNKNSS
Sbjct:   326 VDEQMINVQNKNSS 339
GO:0003924 "GTPase activity" evidence=IEA
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005525 "GTP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005874 "microtubule" evidence=IEA
GO:0006184 "GTP catabolic process" evidence=IEA
GO:0007017 "microtubule-based process" evidence=IEA;ISS
GO:0007018 "microtubule-based movement" evidence=IEA
GO:0043234 "protein complex" evidence=IEA
GO:0051258 "protein polymerization" evidence=IEA
GO:0009409 "response to cold" evidence=IEP
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0015630 "microtubule cytoskeleton" evidence=ISS
GO:0005886 "plasma membrane" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP;RCA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0006833 "water transport" evidence=RCA
GO:0006972 "hyperosmotic response" evidence=RCA
GO:0007010 "cytoskeleton organization" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0009266 "response to temperature stimulus" evidence=RCA
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010498 "proteasomal protein catabolic process" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0019344 "cysteine biosynthetic process" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2172254 TUB2 "tubulin beta chain 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172214 TUB3 "tubulin beta chain 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006632 TUB8 "tubulin beta 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2043082 TUB7 "tubulin beta-7 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133084 TUB9 "tubulin beta-9 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158755 TUB4 "tubulin beta chain 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005724 TUB1 "tubulin beta-1 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198661 TUB5 "tubulin beta-5 chain" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF10_0084 PF10_0084 "tubulin beta chain, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P29514TBB6_ARATHNo assigned EC number0.70330.84720.5189yesno
P25862TBB1_AVESANo assigned EC number0.70330.84720.6036N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
TUB15
tubulin, beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain (By similarity) (439 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
PLN00220447 PLN00220, PLN00220, tubulin beta chain; Provisiona 1e-179
PTZ00010445 PTZ00010, PTZ00010, tubulin beta chain; Provisiona 1e-166
cd02187425 cd02187, beta_tubulin, The tubulin superfamily inc 1e-164
COG5023443 COG5023, COG5023, Tubulin [Cytoskeleton] 1e-109
cd06059382 cd06059, Tubulin, The tubulin superfamily includes 9e-79
cd00286328 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includ 7e-69
cd02186434 cd02186, alpha_tubulin, The tubulin superfamily in 9e-63
PTZ00335448 PTZ00335, PTZ00335, tubulin alpha chain; Provision 6e-60
PLN00221450 PLN00221, PLN00221, tubulin alpha chain; Provision 7e-53
pfam03953126 pfam03953, Tubulin_C, Tubulin C-terminal domain 9e-44
cd02188431 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit 2e-39
PLN00222454 PLN00222, PLN00222, tubulin gamma chain; Provision 8e-33
cd02190379 cd02190, epsilon_tubulin, The tubulin superfamily 8e-27
PTZ00387465 PTZ00387, PTZ00387, epsilon tubulin; Provisional 1e-26
smart00864192 smart00864, Tubulin, Tubulin/FtsZ family, GTPase d 4e-25
pfam00091210 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase do 4e-16
smart00865120 smart00865, Tubulin_C, Tubulin/FtsZ family, C-term 5e-15
cd02189446 cd02189, delta_tubulin, The tubulin superfamily in 3e-09
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional Back     alignment and domain information 
 Score =  500 bits (1288), Expect = e-179
 Identities = 221/315 (70%), Positives = 234/315 (74%), Gaps = 67/315 (21%)

Query: 1   MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEA 60
           MGTLLISKIREEYP+R+MLTFSVF SPKVSD VVEPYNATLSVHQLVENADECMVL+NEA
Sbjct: 147 MGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEA 206

Query: 61  LYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHF 120
           LYDIC RTLKLTTP+  GDLNHLIS TMSGVTCCLRFPGQLNSDLRKL VNLIPFPRLHF
Sbjct: 207 LYDICFRTLKLTTPS-FGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHF 265

Query: 121 AMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKE 180
            MVGFAPLTSRGSQQY++L+VPE+T QMWD +NMMCAAD RHGRYLTAS MFRGKMS KE
Sbjct: 266 FMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAADPRHGRYLTASAMFRGKMSTKE 325

Query: 181 VDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229
           VDEQMINVQNKNS                    SYFVEWIPNNVKSSVC           
Sbjct: 326 VDEQMINVQNKNS--------------------SYFVEWIPNNVKSSVCDIPPKGLKMAS 365

Query: 230 -----------------------------------EGMDEMEFTEAESNMNDLVAEYQQY 254
                                              EGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 366 TFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425

Query: 255 QDATIDEDVEYEDDD 269
           QDAT DE+ EYED++
Sbjct: 426 QDATADEEGEYEDEE 440

Length = 447
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional Back     alignment and domain information
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional Back     alignment and domain information
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain Back     alignment and domain information
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional Back     alignment and domain information
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional Back     alignment and domain information
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 275
COG5023443 Tubulin [Cytoskeleton] 100.0
PTZ00010445 tubulin beta chain; Provisional 100.0
PLN00221450 tubulin alpha chain; Provisional 100.0
PTZ00335448 tubulin alpha chain; Provisional 100.0
PLN00220447 tubulin beta chain; Provisional 100.0
cd02187425 beta_tubulin The tubulin superfamily includes five 100.0
PLN00222454 tubulin gamma chain; Provisional 100.0
cd02188431 gamma_tubulin Gamma-tubulin is a ubiquitous phylog 100.0
cd02186434 alpha_tubulin The tubulin superfamily includes fiv 100.0
PTZ00387465 epsilon tubulin; Provisional 100.0
cd02190379 epsilon_tubulin The tubulin superfamily includes f 100.0
KOG1374448 consensus Gamma tubulin [Cytoskeleton] 100.0
cd06059382 Tubulin The tubulin superfamily includes five dist 100.0
cd02189446 delta_tubulin The tubulin superfamily includes fiv 100.0
KOG1376407 consensus Alpha tubulin [Cytoskeleton] 100.0
KOG1375369 consensus Beta tubulin [Cytoskeleton] 100.0
cd00286328 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin 100.0
PF03953126 Tubulin_C: Tubulin C-terminal domain; InterPro: IP 99.91
smart00864192 Tubulin Tubulin/FtsZ family, GTPase domain. This d 99.72
cd02191303 FtsZ FtsZ is a GTPase that is similar to the eukar 99.61
cd02202349 FtsZ_type2 FtsZ is a GTPase that is similar to the 99.57
PF00091216 Tubulin: Tubulin/FtsZ family, GTPase domain; Inter 99.51
TIGR00065349 ftsZ cell division protein FtsZ. This family consi 99.41
cd06060493 misato Human Misato shows similarity with Tubulin/ 99.38
cd02201304 FtsZ_type1 FtsZ is a GTPase that is similar to the 99.38
PRK13018378 cell division protein FtsZ; Provisional 99.2
PRK09330384 cell division protein FtsZ; Validated 98.97
smart00865120 Tubulin_C Tubulin/FtsZ family, C-terminal domain. 98.58
PF14881180 Tubulin_3: Tubulin domain 97.25
KOG2530483 consensus Members of tubulin/FtsZ family [Cytoskel 93.17
COG0206338 FtsZ Cell division GTPase [Cell division and chrom 91.33
>COG5023 Tubulin [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-79  Score=553.82  Aligned_cols=242  Identities=49%  Similarity=0.885  Sum_probs=237.9

Q ss_pred             ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757            1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL   80 (275)
Q Consensus         1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~   80 (275)
                      |||+|||+|+++||||.+.+|+|||.++.+|+||||||++|+++.|+|++||++++||+||++||.+.|++.+|+ |.++
T Consensus       147 ~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~-y~~l  225 (443)
T COG5023         147 LGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPS-YDDL  225 (443)
T ss_pred             HHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCC-hHHH
Confidence            699999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757           81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL  160 (275)
Q Consensus        81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~  160 (275)
                      |+|||++||++|+++||||++|+|++++.+|||||||+||+.++|+|++...+..+++.++.+++++||+++|+|++|||
T Consensus       226 N~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~~~~~~~sv~evt~~~f~p~N~mv~~dp  305 (443)
T COG5023         226 NQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGSAAHEKNSVSEVTNQLFDPKNQMVSCDP  305 (443)
T ss_pred             HHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhhHHHhcccHHHHHHHHhCcccceeeecC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757          161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC-----------  229 (275)
Q Consensus       161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~-----------  229 (275)
                      ++|+|+++|+++||+++++||++++.++|.|+.                    .+||+|+|+|||+++|           
T Consensus       306 r~g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~--------------------~~Fv~W~P~~~~vai~~~~P~~~~~~~  365 (443)
T COG5023         306 RKGRYMAVCLLFRGDVDPRDVSRAVTRVQSKRT--------------------IQFVEWCPTGFKVAICKRPPSEPAEVD  365 (443)
T ss_pred             CCCeeeehhHHHhcCCCHHHHHHHHHHHHhcCc--------------------ccccccCCcceeeeeeccCCcccccce
Confidence            999999999999999999999999999999999                    9999999999999999           


Q ss_pred             --------------------------------------cCCChhhHHHHHHHHHHHHHHHHHHHhcCCCccc
Q 047757          230 --------------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDV  263 (275)
Q Consensus       230 --------------------------------------eGmee~eF~ea~e~l~~li~eY~~~~~~~~~~~~  263 (275)
                                                            |||||+||+||||+|++|++||++++++.+++++
T Consensus       366 ~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~~  437 (443)
T COG5023         366 VSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDE  437 (443)
T ss_pred             eeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccchh
Confidence                                                  9999999999999999999999999998887554

>PTZ00010 tubulin beta chain; Provisional Back     alignment and domain information
>PLN00221 tubulin alpha chain; Provisional Back     alignment and domain information
>PTZ00335 tubulin alpha chain; Provisional Back     alignment and domain information
>PLN00220 tubulin beta chain; Provisional Back     alignment and domain information
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PLN00222 tubulin gamma chain; Provisional Back     alignment and domain information
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily Back     alignment and domain information
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>PTZ00387 epsilon tubulin; Provisional Back     alignment and domain information
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1374 consensus Gamma tubulin [Cytoskeleton] Back     alignment and domain information
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa Back     alignment and domain information
>KOG1376 consensus Alpha tubulin [Cytoskeleton] Back     alignment and domain information
>KOG1375 consensus Beta tubulin [Cytoskeleton] Back     alignment and domain information
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation Back     alignment and domain information
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain Back     alignment and domain information
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins Back     alignment and domain information
>TIGR00065 ftsZ cell division protein FtsZ Back     alignment and domain information
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria Back     alignment and domain information
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes Back     alignment and domain information
>PRK13018 cell division protein FtsZ; Provisional Back     alignment and domain information
>PRK09330 cell division protein FtsZ; Validated Back     alignment and domain information
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain Back     alignment and domain information
>PF14881 Tubulin_3: Tubulin domain Back     alignment and domain information
>KOG2530 consensus Members of tubulin/FtsZ family [Cytoskeleton] Back     alignment and domain information
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
3ryc_B445 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-103
4i4t_B445 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-103
4f61_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-103
4drx_B431 Gtp-Tubulin In Complex With A Darpin Length = 431 1e-103
3du7_B445 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 1e-103
1z2b_B445 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 1e-102
1ffx_B445 Tubulin:stathmin-Like Domain Complex Length = 445 1e-102
2xrp_A445 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 1e-102
1tub_B427 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 1e-101
4ffb_B463 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 3e-89
4i4t_A450 Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co 1e-39
3ryc_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 1e-39
4drx_A437 Gtp-Tubulin In Complex With A Darpin Length = 437 1e-39
1z2b_A448 Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai 3e-39
1sa0_A451 Tubulin-Colchicine: Stathmin-Like Domain Complex Le 5e-39
3du7_A449 Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai 6e-39
3hkb_A451 Tubulin: Rb3 Stathmin-Like Domain Complex Length = 6e-39
2btq_B426 Structure Of Btubab Heterodimer From Prosthecobacte 7e-39
1ffx_A451 Tubulin:stathmin-Like Domain Complex Length = 451 1e-38
1tub_A440 Tubulin Alpha-Beta Dimer, Electron Diffraction Leng 2e-38
2xrp_B452 Human Doublecortin N-Dc Repeat (1mjd) And Mammalian 2e-38
1jff_A451 Refined Structure Of Alpha-Beta Tubulin From Zinc-I 2e-38
4ffb_A447 A Tog:alphaBETA-Tubulin Complex Structure Reveals C 1e-37
2bto_A473 Structure Of Btuba From Prosthecobacter Dejongeii L 5e-33
1z5v_A474 Crystal Structure Of Human Gamma-Tubulin Bound To G 7e-27
3cb2_A475 Crystal Structure Of Human Gamma-Tubulin Bound To G 7e-27
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445 Back     alignment and structure 
Iteration: 1

 Score =  370 bits (951), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/300 (63%), Positives = 210/300 (70%), Gaps = 67/300 (22%)
Query: 5   LISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDI 64
           LISKIREEYP+RIM TFSV  SPKVSD VVEPYNATLSVHQLVEN DE   ++NEALYDI
Sbjct: 151 LISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDI 210
Query: 65  CLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVG 124
           C RTLKLTTP   GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF M G
Sbjct: 211 CFRTLKLTTP-TYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPG 269
Query: 125 FAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKEVDEQ 184
           FAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT +T+FRG+MS KEVDEQ
Sbjct: 270 FAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGRMSMKEVDEQ 329
Query: 185 MINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC--------------- 229
           M+N+QNKNS                    SYFVEWIPNNVK++VC               
Sbjct: 330 MLNIQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSSTFIG 369
Query: 230 -------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDAT 258
                                          EGMDEMEFTEAESNMNDLV+EYQQYQDAT
Sbjct: 370 NSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445 Back     alignment and structure
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431 Back     alignment and structure
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445 Back     alignment and structure
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445 Back     alignment and structure
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427 Back     alignment and structure
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463 Back     alignment and structure
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 450 Back     alignment and structure
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin Length = 437 Back     alignment and structure
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448 Back     alignment and structure
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 449 Back     alignment and structure
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter Dejongeii Length = 426 Back     alignment and structure
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex Length = 451 Back     alignment and structure
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 440 Back     alignment and structure
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 452 Back     alignment and structure
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced Sheets Stabilized With Taxol Length = 451 Back     alignment and structure
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 447 Back     alignment and structure
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473 Back     alignment and structure
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gtpgammas Length = 474 Back     alignment and structure
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp Length = 475 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 1e-131
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 1e-129
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 1e-128
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 1e-127
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 1e-125
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445 Back     alignment and structure
 Score =  377 bits (970), Expect = e-131
 Identities = 197/315 (62%), Positives = 222/315 (70%), Gaps = 67/315 (21%)

Query: 1   MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEA 60
           MGTLLISKIREEYP+RIM TFSV  SPKVSD VVEPYNATLSVHQLVEN DE   ++NEA
Sbjct: 147 MGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEA 206

Query: 61  LYDICLRTLKLTTPAVIGDLNHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHF 120
           LYDIC RTLKLTTP   GDLNHL+S TMSGVT CLRFPGQLN+DLRKL VN++PFPRLHF
Sbjct: 207 LYDICFRTLKLTTPTY-GDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHF 265

Query: 121 AMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSAKE 180
            M GFAPLTSRGSQQY++L+VPE+T QM+D +NMM A D RHGRYLT +T+FRG+MS KE
Sbjct: 266 FMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDPRHGRYLTVATIFRGRMSMKE 325

Query: 181 VDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC----------- 229
           VDEQM+N+QNKNS                    SYFVEWIPNNVK++VC           
Sbjct: 326 VDEQMLNIQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSS 365

Query: 230 -----------------------------------EGMDEMEFTEAESNMNDLVAEYQQY 254
                                              EGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 366 TFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425

Query: 255 QDATIDEDVEYEDDD 269
           QDAT DE  E+E+++
Sbjct: 426 QDATADEQGEFEEEE 440
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473 Back     alignment and structure
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451 Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475 Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
3ryc_B445 Tubulin beta chain; alpha-tubulin, beta-tubulin, G 100.0
3ryc_A451 Tubulin alpha chain; alpha-tubulin, beta-tubulin, 100.0
3cb2_A475 Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m 100.0
2btq_B426 Tubulin btubb; structural protein, cytoskeletal pr 100.0
2bto_A473 Tubulin btuba; bacterial tubulin, polymerization, 100.0
2vap_A364 FTSZ, cell division protein FTSZ homolog 1; polyme 99.96
2r75_1338 Cell division protein FTSZ; GTPase, tubulin-like, 99.96
1w5f_A353 Cell division protein FTSZ; complete proteome, GTP 99.95
2vxy_A382 FTSZ, cell division protein FTSZ; GTP-binding, nuc 99.95
1ofu_A320 FTSZ, cell division protein FTSZ; bacterial cell d 99.95
2vaw_A394 FTSZ, cell division protein FTSZ; bacterial cell d 99.95
1rq2_A382 Cell division protein FTSZ; cell cycle, tubulin, G 99.95
4dxd_A396 Cell division protein FTSZ; rossmann fold, GTPase, 99.79
3m89_A427 FTSZ/tubulin-related protein; partition, TUBZ, GTP 99.77
3v3t_A360 Cell division GTPase FTSZ, diverged; TUBZ, tubulin 99.65
2e4h_B36 Tubulin alpha-ubiquitous chain; cytoskeleton, CAP- 98.18
4ei7_A389 Plasmid replication protein REPX; GTP hydrolase, p 96.77
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ... Back     alignment and structure
Probab=100.00  E-value=7.6e-73  Score=537.83  Aligned_cols=251  Identities=78%  Similarity=1.216  Sum_probs=235.4

Q ss_pred             ChhHHHHHHHhHcCCceeceeEEecCCCCCccccccccchhhhhhhhcCCCeeEEeccHHHHHHHHhhcCCCCCCcccch
Q 047757            1 MGTLLISKIREEYPERIMLTFSVFRSPKVSDIVVEPYNATLSVHQLVENADECMVLNNEALYDICLRTLKLTTPAVIGDL   80 (275)
Q Consensus         1 lGS~lle~L~d~ypk~~~~~~~V~Ps~~~~~~vvqpYNsiLsl~~L~e~sd~v~~~dN~aL~~ic~~~l~i~~p~~~~~~   80 (275)
                      +|++|+|+|+++|||+.+.+++|||+++.+++||||||++|++++|.+++|+++++||+||++||.+.+++.+|+ |.++
T Consensus       147 ~gs~lle~L~~ey~kk~~~~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~-y~~l  225 (445)
T 3ryc_B          147 MGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPT-YGDL  225 (445)
T ss_dssp             HHHHHHHHHHHHCTTSEEEEEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCC-HHHH
T ss_pred             HHHHHHHHHHHHcCccccceEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCc-chhh
Confidence            589999999999999999999999999889999999999999999999999999999999999999999999999 9999


Q ss_pred             hhhhHhhccCCcccccCCCCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecC
Q 047757           81 NHLISGTMSGVTCCLRFPGQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADL  160 (275)
Q Consensus        81 N~lIA~~ls~~t~~~RF~g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~  160 (275)
                      |++||++|+++|+++||||++|+|+.++.+|||||||+||++++|+|++...+..++++++.+|++++|+++|+|++|||
T Consensus       226 N~lIa~~~s~iT~slRf~G~lN~Dl~~l~tnLVP~PrlhF~~~s~aP~~s~~~~~~~~~sv~elt~~~f~~~n~m~~~dp  305 (445)
T 3ryc_B          226 NHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMMAACDP  305 (445)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSSCSHHHHHHHHCSSTTCCEEEEEEESCCCTTCCCCCCCCHHHHHHHTTSGGGBSSSCCG
T ss_pred             HHHHHhcchhhccccccCcccccCHHHHhhcccCCCceeeeccccCcccccchhhhccCCHHHHHHHHHhhcCCeeecCC
Confidence            99999999999999999999999999999999999999999999999999988889999999999999999999999999


Q ss_pred             CCcchhhheeeccccCChhHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------
Q 047757          161 RHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC-----------  229 (275)
Q Consensus       161 ~~g~~la~~~~~RG~~~~~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~-----------  229 (275)
                      ++||||||++++||+++++||++++.++|.|++                    ++||+|+|+|||+|+|           
T Consensus       306 ~~gky~a~~~~~RG~v~~kdv~~~i~~ik~k~~--------------------~~Fv~W~p~~~k~~i~~~pp~~~~~s~  365 (445)
T 3ryc_B          306 RHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNS--------------------SYFVEWIPNNVKTAVCDIPPRGLKMSS  365 (445)
T ss_dssp             GGSCEEEEEEEEEESCCHHHHHHHHHHHHHHTG--------------------GGBCTTSTTCEEEEEESSCCTTCSEEE
T ss_pred             CCCcceeeeeeeecCCChHHHHHHHHHHHhhCc--------------------ccCcccCCCceeeeeeccCCcccceee
Confidence            999999999999999999999999999999999                    9999999999999998           


Q ss_pred             -----------------------------------cCCChhhHHHHHHHHHHHHHHHHHHHhcCCCccccCCCCCCCC
Q 047757          230 -----------------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDATIDEDVEYEDDDVPA  272 (275)
Q Consensus       230 -----------------------------------eGmee~eF~ea~e~l~~li~eY~~~~~~~~~~~~~~~~~~~~~  272 (275)
                                                         |||||+||+||+++|++|++||+++++++.++++|+++|++|.
T Consensus       366 ~~lsNsTaI~~~~~rl~~kFd~m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~~~~~~~~~~~~  443 (445)
T 3ryc_B          366 TFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGED  443 (445)
T ss_dssp             EEEEEEGGGHHHHHHHHHHHHHHHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHCCTTC-----------
T ss_pred             eeecCcHHHHHHHHHHHHHHHhhhhcccchhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccCCccccccchhhhh
Confidence                                               9999999999999999999999999999887665555555543
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ... Back     alignment and structure
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Back     alignment and structure
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Back     alignment and structure
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Back     alignment and structure
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A* Back     alignment and structure
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1* Back     alignment and structure
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A* Back     alignment and structure
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1 Back     alignment and structure
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A* Back     alignment and structure
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A* Back     alignment and structure
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A* Back     alignment and structure
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C} Back     alignment and structure
>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens} Back     alignment and structure
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 275
d1tubb2184 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su 1e-55
d1tuba2195 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S 2e-50
d2btoa2180 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth 2e-46
d2btoa1244 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthec 9e-43
d1tubb1243 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus 2e-42
d1tuba1245 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus 7e-40
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  175 bits (445), Expect = 1e-55
 Identities = 111/204 (54%), Positives = 127/204 (62%), Gaps = 66/204 (32%)

Query: 99  GQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAA 158
           GQLN+DLRKL VN++PFPRLHF M GFAPLTSRGSQQY++L+VPE+T QM+D +NMM A 
Sbjct: 1   GQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMMAAC 60

Query: 159 DLRHGRYLTASTMFRGKMSAKEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVE 218
           D RHGRYLT + +FRG+MS KEVDEQM+NVQNKNS                    SYFVE
Sbjct: 61  DPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNS--------------------SYFVE 100

Query: 219 WIPNNVKSSVC----------------------------------------------EGM 232
           WIPNNVK++VC                                              EGM
Sbjct: 101 WIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGM 160

Query: 233 DEMEFTEAESNMNDLVAEYQQYQD 256
           DEMEFTEAESNMNDLV+EYQQYQD
Sbjct: 161 DEMEFTEAESNMNDLVSEYQQYQD 184
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195 Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180 Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 244 Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 243 Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 245 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
d1tuba2195 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 100.0
d1tubb2184 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 100.0
d2btoa2180 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 100.0
d1tubb1243 Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982 99.96
d2btoa1244 Tubulin alpha-subunit {Prosthecobacter dejongeii [ 99.96
d1tuba1245 Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98 99.96
d1ofua1198 Cell-division protein FtsZ {Pseudomonas aeruginosa 96.59
d1w5fa1194 Cell-division protein FtsZ {Thermotoga maritima [T 96.04
d1rq2a1198 Cell-division protein FtsZ {Mycobacterium tubercul 95.56
d2vapa1209 Cell-division protein FtsZ {Archaeon Methanococcus 95.12
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.8e-38  Score=269.73  Aligned_cols=139  Identities=35%  Similarity=0.676  Sum_probs=133.4

Q ss_pred             CCccccHHHHhhhcCCCCCcccccccccccccCCCccccccCHHHHHHHhcccCCcceeecCCCcchhhheeeccccCCh
Q 047757           99 GQLNSDLRKLVVNLIPFPRLHFAMVGFAPLTSRGSQQYQSLSVPEITHQMWDDRNMMCAADLRHGRYLTASTMFRGKMSA  178 (275)
Q Consensus        99 g~ln~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~g~~la~~~~~RG~~~~  178 (275)
                      |.+|+|+++|.+|||||||+||++++|+|++......+++.++.++++++|+++++|++++|++|+||++++++||++.+
T Consensus         1 G~lN~Dl~kl~tNLVPfPrlhFl~~s~aP~~~~~~~~~~~~s~~~l~~~lf~~~n~~~~~~~~~~~yls~~~~~RG~~~~   80 (195)
T d1tuba2           1 GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP   80 (195)
T ss_dssp             CSSCCCHHHHHHHHCSSSSCCCCBCCBCCCCCTTCCCSSSCCTTHHHHHHHSTTTCSSCCCTTSSCEEEEEEEEESSCCH
T ss_pred             CCCcchHHHhhccCCCCCcccchhccccccCchhhhhhhcCcHHHHHHHHhchhhhhcccCCCccHHHHHHHHHhCCCCc
Confidence            78999999999999999999999999999998888888999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhhccCCccccccchhheeeecccccccccccCcceeeeee-----------------------------
Q 047757          179 KEVDEQMINVQNKNSSSARYFGLGFLALVVLRGSTSYFVEWIPNNVKSSVC-----------------------------  229 (275)
Q Consensus       179 ~~v~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~fv~w~p~~~~~~~~-----------------------------  229 (275)
                      ++|++++.++|.++.                    ++|++|+|++||+++|                             
T Consensus        81 ~ei~~~i~~ik~~~~--------------------~~fv~W~~~~~kv~~~~~~p~~~~~~~l~~~~~s~~~l~N~TsI~  140 (195)
T d1tuba2          81 KDVNAAIATIKTKRT--------------------IQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIA  140 (195)
T ss_dssp             HHHHHHHHHHTTSST--------------------TCCCSSCSSCCEEEEESSCCCCCTGGGCCCCCCCCBEEEEETTHH
T ss_pred             chHHHHHHHHHHhCC--------------------cchhhhhccceeeeecCCCCccCCCcchhhhhhhhhHhcCChhHH
Confidence            999999999999988                    9999999999999886                             


Q ss_pred             -------------------------cCCChhhHHHHHHHHHHHHHHHHHHHhc
Q 047757          230 -------------------------EGMDEMEFTEAESNMNDLVAEYQQYQDA  257 (275)
Q Consensus       230 -------------------------eGmee~eF~ea~e~l~~li~eY~~~~~~  257 (275)
                                               |||||+||+||||+|++|++||+++...
T Consensus       141 ~~f~~i~~~Fdkl~~rkAflh~Y~~egmee~eF~EA~e~l~~li~eY~~~~~~  193 (195)
T d1tuba2         141 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVD  193 (195)
T ss_dssp             HHHHHHHHHHHHHTTTTCCTTTGGGGSCCSSSSHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHHhhchHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence                                     8999999999999999999999998543
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Back     information, alignment and structure
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure