Citrus Sinensis ID: 047796

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRLD
cccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccHHccHHHHHcccccccccHHHHHHHHHHccccccccEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHccccccHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccccc
ccccccHHHccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHHHHHccEEEHHHcHHHHHcHHHcccccccccHHHHHHHHHHcccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHHcccccHHHHHHHHHHcHHHHHHHHHHHHHHHHccccEcccccEcc
tknidsekfaapnnnsargFEVIDNMKAAVEKACPRVVSCADILTIAAERSValsggpswavplgrrdsrTANRAlanqklpgpsdtlDVLKSSfrnvgcndnfdlVALSGAHTFGRAQCRFfrgrlydfnntgkpdptlDRTLLKQLRElcpqggnggvlanfdvktpdvfdnkyfsnLRLRKGLLQSdqelfstpgadtAAIVEDFGRNQNAFFKNFVTSMIrmgnlkplqeikgrld
tknidsekfaapnnnsargFEVIDNMKAAVEKACPRVVSCADILTIAAErsvalsggpswavplgrRDSRTANRalanqklpgpsdtLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMirmgnlkplqeikgrld
TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRLD
*******************FEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAV**************************DVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNL***********
*KNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCP***N*GVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEI*****
TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRLD
***************SARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEI*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query240 2.2.26 [Sep-21-2011]
Q9LEH3327 Peroxidase 15 OS=Ipomoea N/A no 0.979 0.718 0.627 3e-80
P17180349 Peroxidase C3 OS=Armoraci N/A no 0.975 0.670 0.641 9e-80
P24102349 Peroxidase 22 OS=Arabidop yes no 0.975 0.670 0.623 3e-79
P59121306 Peroxidase E5 OS=Armoraci N/A no 0.995 0.781 0.619 9e-79
O80912349 Peroxidase 23 OS=Arabidop no no 0.975 0.670 0.619 2e-78
Q42578335 Peroxidase 53 OS=Arabidop no no 0.995 0.713 0.586 8e-77
P00433353 Peroxidase C1A OS=Armorac N/A no 0.995 0.677 0.604 1e-76
Q9LHB9352 Peroxidase 32 OS=Arabidop no no 0.995 0.678 0.6 1e-76
P15233332 Peroxidase C1C (Fragment) N/A no 0.995 0.719 0.595 1e-76
P17179347 Peroxidase C2 OS=Armoraci N/A no 0.995 0.688 0.591 2e-76
>sp|Q9LEH3|PER15_IPOBA Peroxidase 15 OS=Ipomoea batatas GN=pod PE=1 SV=1 Back     alignment and function desciption
 Score =  298 bits (763), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 148/236 (62%), Positives = 173/236 (73%), Gaps = 1/236 (0%)

Query: 4   IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVP 63
           I SEK A PN NS RGF+V+DN+K AVE ACP VVSC DIL +A+E SV+L+GGPSW V 
Sbjct: 85  IVSEKDALPNTNSTRGFDVVDNIKTAVENACPGVVSCVDILALASESSVSLAGGPSWNVL 144

Query: 64  LGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFF 123
           LGRRD RTAN+  AN  LP P + L  L   F NVG N N DLVALSGAHTFGRAQCR F
Sbjct: 145 LGRRDRRTANQGGANTSLPSPFENLTNLTQKFTNVGLNVN-DLVALSGAHTFGRAQCRTF 203

Query: 124 RGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR 183
             RL++F+NTG PDPTL+ T L  L+++CPQGG+G  + N D  TPD FDN YFSNL+  
Sbjct: 204 SPRLFNFSNTGNPDPTLNTTYLATLQQICPQGGSGFTVTNLDPTTPDTFDNNYFSNLQTN 263

Query: 184 KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
           +GLLQSDQELFST GA T AIV +F  NQ AFF++FV SMI MGN+ PL    G +
Sbjct: 264 RGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEI 319
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Ipomoea batatas (taxid: 4120)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|P17180|PER3_ARMRU Peroxidase C3 OS=Armoracia rusticana GN=PRXC3 PE=3 SV=1 Back     alignment and function description
>sp|P24102|PER22_ARATH Peroxidase 22 OS=Arabidopsis thaliana GN=PER22 PE=1 SV=2 Back     alignment and function description
>sp|P59121|PERE5_ARMRU Peroxidase E5 OS=Armoracia rusticana GN=HRPE5 PE=1 SV=1 Back     alignment and function description
>sp|O80912|PER23_ARATH Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1 Back     alignment and function description
>sp|Q42578|PER53_ARATH Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1 Back     alignment and function description
>sp|P00433|PER1A_ARMRU Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2 Back     alignment and function description
>sp|Q9LHB9|PER32_ARATH Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3 Back     alignment and function description
>sp|P15233|PER1C_ARMRU Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1 Back     alignment and function description
>sp|P17179|PER2_ARMRU Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
110007377 350 peroxidase [Citrus maxima] 0.983 0.674 0.699 2e-92
255587906271 Peroxidase C3 precursor, putative [Ricin 0.995 0.881 0.686 1e-89
1279654 345 peroxidase [Populus trichocarpa] 0.995 0.692 0.669 2e-87
118484904 354 unknown [Populus trichocarpa] gi|2256262 0.995 0.675 0.669 3e-87
1279648 343 peroxidase [Populus trichocarpa] 0.995 0.696 0.662 7e-86
224057144 343 predicted protein [Populus trichocarpa] 0.995 0.696 0.654 9e-86
109809965 346 rubber peroxidase 1 [Hevea brasiliensis] 0.995 0.690 0.640 2e-85
1199778 343 peroxidase [Populus nigra] 0.995 0.696 0.662 2e-85
115345276321 peroxidase [Populus alba] 0.995 0.744 0.656 6e-85
224057150 343 predicted protein [Populus trichocarpa] 0.995 0.696 0.654 1e-84
>gi|110007377|gb|ABG49115.1| peroxidase [Citrus maxima] Back     alignment and taxonomy information
 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 165/236 (69%), Positives = 188/236 (79%)

Query: 4   IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVP 63
           IDSEKF+  NNNSARGFEV+D MK A+E ACP +VSCADIL IA+E+SV LSGGPSW VP
Sbjct: 89  IDSEKFSMANNNSARGFEVVDAMKTALESACPGIVSCADILAIASEQSVNLSGGPSWTVP 148

Query: 64  LGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFF 123
           LGRRD RTANR+LA+Q LP P  TLD+LK  FRNVG NDN DLVALSGAHTFGRAQC+FF
Sbjct: 149 LGRRDGRTANRSLADQNLPTPFQTLDLLKGRFRNVGLNDNTDLVALSGAHTFGRAQCQFF 208

Query: 124 RGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR 183
             RL++FN TG PDPTL+ TLL QL++LCPQGGNG VL N D+ TPD FDN YFSNL+  
Sbjct: 209 SQRLFNFNGTGNPDPTLNATLLAQLQQLCPQGGNGSVLTNLDLSTPDGFDNDYFSNLQAN 268

Query: 184 KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
            GLLQSDQELFST GADT  IV +F  N+ AFF++F  SMIRMGNL  L   +G +
Sbjct: 269 NGLLQSDQELFSTSGADTIPIVNNFSSNETAFFESFAVSMIRMGNLSLLTGTQGEI 324

Source: Citrus maxima

Species: Citrus maxima

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255587906|ref|XP_002534437.1| Peroxidase C3 precursor, putative [Ricinus communis] gi|223525298|gb|EEF27947.1| Peroxidase C3 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|1279654|emb|CAA66037.1| peroxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118484904|gb|ABK94318.1| unknown [Populus trichocarpa] gi|225626271|gb|ACN97185.1| peroxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|1279648|emb|CAA66034.1| peroxidase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224057144|ref|XP_002299141.1| predicted protein [Populus trichocarpa] gi|222846399|gb|EEE83946.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|109809965|gb|ABG46370.1| rubber peroxidase 1 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|1199778|dbj|BAA11853.1| peroxidase [Populus nigra] Back     alignment and taxonomy information
>gi|115345276|dbj|BAF33314.1| peroxidase [Populus alba] Back     alignment and taxonomy information
>gi|224057150|ref|XP_002299144.1| predicted protein [Populus trichocarpa] gi|1279650|emb|CAA66035.1| peroxidase [Populus trichocarpa] gi|222846402|gb|EEE83949.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
UNIPROTKB|Q9LEH3327 pod "Peroxidase 15" [Ipomoea b 0.979 0.718 0.627 1.2e-74
TAIR|locus:2057180349 AT2G38380 [Arabidopsis thalian 0.975 0.670 0.623 1.7e-73
TAIR|locus:2057165349 AT2G38390 [Arabidopsis thalian 0.975 0.670 0.619 1.6e-72
TAIR|locus:2170204335 PA2 "peroxidase 2" [Arabidopsi 0.995 0.713 0.586 4.8e-71
TAIR|locus:2097273352 AT3G32980 [Arabidopsis thalian 0.995 0.678 0.6 7.7e-71
TAIR|locus:2101318353 PRXCB "peroxidase CB" [Arabido 0.995 0.677 0.595 5.5e-70
TAIR|locus:2101298354 PRXCA "peroxidase CA" [Arabido 0.995 0.675 0.591 1.1e-69
TAIR|locus:2138278346 AT4G08780 [Arabidopsis thalian 0.995 0.690 0.570 3e-69
TAIR|locus:2138273346 Prx37 "peroxidase 37" [Arabido 0.995 0.690 0.570 2.1e-68
TAIR|locus:2170214358 AT5G06730 [Arabidopsis thalian 0.991 0.664 0.552 1.3e-66
UNIPROTKB|Q9LEH3 pod "Peroxidase 15" [Ipomoea batatas (taxid:4120)] Back     alignment and assigned GO terms
 Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
 Identities = 148/236 (62%), Positives = 173/236 (73%)

Query:     4 IDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVP 63
             I SEK A PN NS RGF+V+DN+K AVE ACP VVSC DIL +A+E SV+L+GGPSW V 
Sbjct:    85 IVSEKDALPNTNSTRGFDVVDNIKTAVENACPGVVSCVDILALASESSVSLAGGPSWNVL 144

Query:    64 LGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFF 123
             LGRRD RTAN+  AN  LP P + L  L   F NVG N N DLVALSGAHTFGRAQCR F
Sbjct:   145 LGRRDRRTANQGGANTSLPSPFENLTNLTQKFTNVGLNVN-DLVALSGAHTFGRAQCRTF 203

Query:   124 RGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNLRLR 183
               RL++F+NTG PDPTL+ T L  L+++CPQGG+G  + N D  TPD FDN YFSNL+  
Sbjct:   204 SPRLFNFSNTGNPDPTLNTTYLATLQQICPQGGSGFTVTNLDPTTPDTFDNNYFSNLQTN 263

Query:   184 KGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
             +GLLQSDQELFST GA T AIV +F  NQ AFF++FV SMI MGN+ PL    G +
Sbjct:   264 RGLLQSDQELFSTSGAPTIAIVNNFSANQTAFFESFVQSMINMGNISPLTGSNGEI 319
GO:0004601 "peroxidase activity" evidence=IDA
GO:0020037 "heme binding" evidence=IDA
TAIR|locus:2057180 AT2G38380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057165 AT2G38390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170204 PA2 "peroxidase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2097273 AT3G32980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101318 PRXCB "peroxidase CB" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101298 PRXCA "peroxidase CA" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138278 AT4G08780 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2138273 Prx37 "peroxidase 37" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170214 AT5G06730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P24102PER22_ARATH1, ., 1, 1, ., 1, ., 70.62390.9750.6704yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.914
3rd Layer1.11.10.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_I0096
SubName- Full=Peroxidase; EC=1.11.1.7; (343 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIV.3012.1
aspartate transaminase (EC-2.6.1.1) (403 aa)
     •  0.899
gw1.VI.2755.1
aspartate transaminase (EC-2.6.1.1) (397 aa)
     •  0.899
gw1.41.216.1
histidinol-phosphate aminotransferase (366 aa)
     •  0.899
gw1.28.655.1
annotation not avaliable (78 aa)
     •  0.899
f5h
SubName- Full=Ferulate-5-hydroxylase; Flags- Precursor; (501 aa)
     •  0.899
grail3.0013044701
aspartate transaminase (EC-2.6.1.1) (466 aa)
     •  0.899
PAL
RecName- Full=Phenylalanine ammonia-lyase; EC=4.3.1.24;; This is a key enzyme of plant metaboli [...] (715 aa)
     •  0.899
SAD
SubName- Full=Cinnamyl alcohol dehydrogenase; (362 aa)
     •  0.899
fgenesh4_pg.C_scaffold_803000002
hypothetical protein (316 aa)
     •  0.899
AMT7
aminotransferase family protein (EC-2.6.1.5) (407 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-119
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 3e-58
pfam00141180 pfam00141, peroxidase, Peroxidase 6e-41
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 5e-21
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 6e-16
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 5e-09
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 7e-09
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 1e-08
cd00692328 cd00692, ligninase, Ligninase and other manganese- 6e-04
pfam00141180 pfam00141, peroxidase, Peroxidase 0.001
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  342 bits (879), Expect = e-119
 Identities = 122/232 (52%), Positives = 150/232 (64%), Gaps = 5/232 (2%)

Query: 1   TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
           T N  SEK A PN  S RGF+VID++KAA+E ACP VVSCADIL +AA  +V L+GGPS+
Sbjct: 58  TANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSY 116

Query: 61  AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
            VPLGRRD R ++ A     LP P  ++  L S F + G     DLVALSGAHT GRA C
Sbjct: 117 EVPLGRRDGRVSS-ANDVGNLPSPFFSVSQLISLFASKGLTVT-DLVALSGAHTIGRAHC 174

Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
             F  RLY+F+ TG PDPTLD     QLR+ CP GG+   L   D  TP+ FDN Y+ NL
Sbjct: 175 SSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNL 234

Query: 181 RLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPL 232
              +GLL SDQ L S P   T AIV  +  NQ+AFF++F  +M++MGN+  L
Sbjct: 235 LAGRGLLTSDQALLSDP--RTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVL 284

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 240
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PLN02608289 L-ascorbate peroxidase 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02879251 L-ascorbate peroxidase 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 99.96
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 99.96
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.96
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.4
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.2e-79  Score=547.98  Aligned_cols=231  Identities=43%  Similarity=0.759  Sum_probs=218.4

Q ss_pred             chhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCCCCC
Q 047796            5 DSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKLPGP   84 (240)
Q Consensus         5 ~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p   84 (240)
                      ..||++++|. +++||++|+.||++||++||++|||||||+|||||||+++|||.|+|++||||+++|...++. +||.|
T Consensus        82 ~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p  159 (324)
T PLN03030         82 NTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGF  159 (324)
T ss_pred             cccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCC
Confidence            4799999998 789999999999999999999999999999999999999999999999999999998776664 89999


Q ss_pred             CCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhhCCCCCCCCcccc
Q 047796           85 SDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTG-KPDPTLDRTLLKQLRELCPQGGNGGVLAN  163 (240)
Q Consensus        85 ~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~-~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~  163 (240)
                      +.++++|++.|+++||+.+ |||+||||||||++||.+|.+|||||.+++ .+||+||+.|+..|+..||..++..+.++
T Consensus       160 ~~~~~~l~~~F~~~Gl~~~-DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~  238 (324)
T PLN03030        160 TDSIDVQKQKFAAKGLNTQ-DLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIA  238 (324)
T ss_pred             CCCHHHHHHHHHHcCCCHH-HheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCcccc
Confidence            9999999999999999999 999999999999999999999999998875 47999999999999999996433334688


Q ss_pred             cCCCCCCccChHHHHHhhhcccccccccccccCCccchHHHHHHhhhCh----HHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 047796          164 FDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQ----NAFFKNFVTSMIRMGNLKPLQEIKGRL  239 (240)
Q Consensus       164 ld~~tp~~FDn~Yy~~l~~~~gll~sD~~L~~d~~~~t~~~v~~yA~~~----~~F~~~Fa~Am~Km~~l~v~tg~~Gei  239 (240)
                      +|..||.+|||+||+||+.++|+|+|||+|+.|+  +|+++|+.||.|+    +.|+++|++||+||++|+|+||.+|||
T Consensus       239 lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~--~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEI  316 (324)
T PLN03030        239 LDTGSSNRFDASFFSNLKNGRGILESDQKLWTDA--STRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEI  316 (324)
T ss_pred             CCCCCCcccccHHHHHHHhcCCCcCCchHhhcCc--cHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCce
Confidence            9999999999999999999999999999999999  9999999999875    599999999999999999999999999


Q ss_pred             C
Q 047796          240 D  240 (240)
Q Consensus       240 R  240 (240)
                      |
T Consensus       317 R  317 (324)
T PLN03030        317 R  317 (324)
T ss_pred             e
Confidence            8

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 8e-78
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 1e-77
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 2e-77
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 3e-77
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 3e-77
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 3e-77
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 3e-77
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 4e-77
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 5e-77
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 8e-77
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 1e-76
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 1e-76
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 3e-76
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 3e-72
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 5e-70
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 6e-64
1sch_A294 Peanut Peroxidase Length = 294 2e-54
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 7e-43
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 5e-37
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 3e-12
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 2e-07
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 2e-07
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 2e-07
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 4e-07
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 5e-07
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 5e-07
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 5e-07
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 5e-07
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 5e-07
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 6e-07
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 6e-07
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 6e-07
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 6e-07
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 6e-07
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 6e-07
1jci_A294 Stabilization Of The Engineered Cation-Binding Loop 1e-05
1stq_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 3e-05
1krj_A294 Engineering Calcium-Binding Site Into Cytochrome C 3e-05
1sog_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 1e-04
1jdr_A294 Crystal Structure Of A Proximal Domain Potassium Bi 1e-04
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure 
Iteration: 1

 Score =  286 bits (731), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 146/240 (60%), Positives = 173/240 (72%), Gaps = 1/240 (0%)
Query: 1   TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
           T +  +EK A  N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L+GGPSW
Sbjct: 59  TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 61  AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
            VPLGRRDS  A   LAN  LPGP  TL  LK SFRNVG N + DLVALSG HTFG+ QC
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
           RF   RLY+F+NTG PDPTL+ T L+ LR LCP  GN   L +FD++TP +FDNKY+ NL
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNL 238
Query: 181 RLRKGLLQSDQELFSTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL 239
             +KGL+QSDQELFS+P A DT  +V  F  +   FF  FV +M RMGN+ PL   +G++
Sbjct: 239 EEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQI 298
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m3 Length = 294 Back     alignment and structure
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m2 Length = 294 Back     alignment and structure
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding Variant Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 1e-136
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 1e-136
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-136
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-130
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 1e-130
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 1e-126
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-117
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 5e-70
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 2e-51
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 6e-49
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 4e-46
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 7e-46
2e39_A344 Peroxidase; heme protein, coordination geometry of 2e-44
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 8e-44
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 1e-15
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 2e-12
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
 Score =  384 bits (989), Expect = e-136
 Identities = 141/232 (60%), Positives = 161/232 (69%), Gaps = 1/232 (0%)

Query: 1   TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
           T  I+SE+ A PN NS RG +V++++K AVE +CP  VSCADIL IAAE +  L GGP W
Sbjct: 58  TDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGW 117

Query: 61  AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
            VPLGRRDS TANR LANQ LP P   L  LK+SF   G N   DLV LSG HTFGRA+C
Sbjct: 118 PVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL-DLVTLSGGHTFGRARC 176

Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
             F  RLY+F+NTG PDPTL+ T L+ LR  CPQ   G  L N D+ TPD FDN+Y+SNL
Sbjct: 177 STFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNL 236

Query: 181 RLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPL 232
               GLLQSDQELFSTPGADT  IV  F  NQN FF NF  SMI+MGN+  L
Sbjct: 237 LQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVL 288
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=2.3e-83  Score=575.23  Aligned_cols=236  Identities=40%  Similarity=0.654  Sum_probs=228.2

Q ss_pred             CCcchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCC
Q 047796            2 KNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKL   81 (240)
Q Consensus         2 ~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~l   81 (240)
                      +++.+|+++++|.+++|||++|+.||++||+.||++|||||||+||||+||+++|||.|+|++||+|++++...+++.+|
T Consensus        59 ~~~~~Ek~~~~N~~~lrgf~vid~iK~~le~~Cp~~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~l  138 (304)
T 3hdl_A           59 ANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQI  138 (304)
T ss_dssp             TTBCCGGGSTTTTTTCCCHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHS
T ss_pred             CCCcccccCCCcccchHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCC
Confidence            45678999999997789999999999999999999999999999999999999999999999999999999888888899


Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCC--CC
Q 047796           82 PGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGN--GG  159 (240)
Q Consensus        82 P~p~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~--~~  159 (240)
                      |.|+.++++|++.|++|||+++ ||||||||||||++||.+|.+|||||+|++.+||+||+.|++.|+..||..++  ++
T Consensus       139 P~p~~~~~~l~~~F~~~Gl~~~-d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~  217 (304)
T 3hdl_A          139 PSPLFNATQLINSFANKTLTAD-EMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTP  217 (304)
T ss_dssp             CCTTCCHHHHHHHHHTTTCCHH-HHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCTTCCTTSC
T ss_pred             CCCCCCHHHHHHHHHHcCCCHH-HhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCCCCCCCCc
Confidence            9999999999999999999999 99999999999999999999999999998889999999999999999998666  78


Q ss_pred             cccccCCCCCCccChHHHHHhhhcccccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 047796          160 VLANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRL  239 (240)
Q Consensus       160 ~~~~ld~~tp~~FDn~Yy~~l~~~~gll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tg~~Gei  239 (240)
                      +.++||..||.+|||+||++|+.++|||+|||+|+.|+  +|+++|++||.|++.|+++|++||+||++|+|+||.+|||
T Consensus       218 ~~~~lD~~TP~~FDN~Yy~nL~~~~glL~SDq~L~~d~--~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeI  295 (304)
T 3hdl_A          218 ITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEA--NLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEI  295 (304)
T ss_dssp             CEEESCSSSTTSCSTHHHHHHHTTCCCSHHHHGGGSSH--HHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBC
T ss_pred             cccCCCCCCcccccHHHHHHHHhCcCCCCCCHHHhcCc--cHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence            88999999999999999999999999999999999999  9999999999999999999999999999999999999999


Q ss_pred             C
Q 047796          240 D  240 (240)
Q Consensus       240 R  240 (240)
                      |
T Consensus       296 R  296 (304)
T 3hdl_A          296 R  296 (304)
T ss_dssp             C
T ss_pred             e
Confidence            8
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 240
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 2e-85
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 3e-83
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 8e-79
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 3e-76
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 1e-67
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 7e-65
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 9e-47
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 2e-46
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 1e-40
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 1e-31
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 6e-31
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 1e-27
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  254 bits (650), Expect = 2e-85
 Identities = 141/232 (60%), Positives = 161/232 (69%), Gaps = 1/232 (0%)

Query: 1   TKNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSW 60
           T  I+SE+ A PN NS RG +V++++K AVE +CP  VSCADIL IAAE +  L GGP W
Sbjct: 58  TDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGW 117

Query: 61  AVPLGRRDSRTANRALANQKLPGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQC 120
            VPLGRRDS TANR LANQ LP P   L  LK+SF   G N   DLV LSG HTFGRA+C
Sbjct: 118 PVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTL-DLVTLSGGHTFGRARC 176

Query: 121 RFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVLANFDVKTPDVFDNKYFSNL 180
             F  RLY+F+NTG PDPTL+ T L+ LR  CPQ   G  L N D+ TPD FDN+Y+SNL
Sbjct: 177 STFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNL 236

Query: 181 RLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPL 232
               GLLQSDQELFSTPGADT  IV  F  NQN FF NF  SMI+MGN+  L
Sbjct: 237 LQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVL 288
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.97
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 99.97
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 99.95
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=9.2e-78  Score=538.51  Aligned_cols=238  Identities=59%  Similarity=0.942  Sum_probs=228.7

Q ss_pred             CCcchhhccCCCCCchhhHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHhCCCceecCCCCCCCchhhhhhhhcCC
Q 047796            2 KNIDSEKFAAPNNNSARGFEVIDNMKAAVEKACPRVVSCADILTIAAERSVALSGGPSWAVPLGRRDSRTANRALANQKL   81 (240)
Q Consensus         2 ~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~l   81 (240)
                      +++.+|+++++|.++.+||++|+.||++||+.||++|||||||+||||+||+++|||.|+|++||+|++++...++..+|
T Consensus        59 ~~~~~E~~~~~N~~~~~g~~~id~iK~~le~~cp~~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~l  138 (304)
T d1fhfa_          59 DTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNL  138 (304)
T ss_dssp             SSCCCGGGSTTTTTTCCCHHHHHHHHHHHHTTSTTTSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHS
T ss_pred             CCccccccCCcccccchhHHHHHHHHHHHHhhCCCccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccC
Confidence            34578999999998889999999999999999999999999999999999999999999999999999999888788899


Q ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCeEeeccccccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhCCCCCCCCcc
Q 047796           82 PGPSDTLDVLKSSFRNVGCNDNFDLVALSGAHTFGRAQCRFFRGRLYDFNNTGKPDPTLDRTLLKQLRELCPQGGNGGVL  161 (240)
Q Consensus        82 P~p~~~~~~l~~~F~~~Gl~~~~dlVaL~GaHtiG~~hc~~f~~rl~~~~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~  161 (240)
                      |.|+.++++|++.|++|||+.+ |||||+||||||++||.+|..|+|+|.+++.+||.+++.|+..|+..||.++...+.
T Consensus       139 P~p~~~~~~l~~~F~~~Gl~~~-d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~  217 (304)
T d1fhfa_         139 PAPFFNLTQLKASFAVQGLNTL-DLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNL  217 (304)
T ss_dssp             CCTTCCHHHHHHHHHHTTCCHH-HHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCE
T ss_pred             CCCCCCHHHHHHHHHHcCCCHH-HHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcc
Confidence            9999999999999999999999 999999999999999999999999999988999999999999999999987767778


Q ss_pred             cccCCCCCCccChHHHHHhhhcccccccccccccCCccchHHHHHHhhhChHHHHHHHHHHHHHhhcCCCCCCCCCccC
Q 047796          162 ANFDVKTPDVFDNKYFSNLRLRKGLLQSDQELFSTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLQEIKGRLD  240 (240)
Q Consensus       162 ~~ld~~tp~~FDn~Yy~~l~~~~gll~sD~~L~~d~~~~t~~~v~~yA~~~~~F~~~Fa~Am~Km~~l~v~tg~~GeiR  240 (240)
                      +.+|..||.+|||+||++++.++|+|+||++|+.|++++|+++|++||+|+++|+++|++||+||++|+||||.+||||
T Consensus       218 ~~~d~~tp~~fDn~Yy~~l~~~~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR  296 (304)
T d1fhfa_         218 TNLDLSTPDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIR  296 (304)
T ss_dssp             EESCSSSTTSCSTHHHHHHHTTCCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCC
T ss_pred             cccCCCCCCccccHHHHHHhhcCcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCccc
Confidence            8999999999999999999999999999999999974479999999999999999999999999999999999999998
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure