Citrus Sinensis ID: 047804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
GMSFFLKLLESFRELQSWVNLAtgacrtkrdckLIMDYEansrirdpvygcvGAVCHLQKQVSELQAELAKAQAGLAFMQS
Flexible Loop (DISEMBL)
GMSFFLKLLESFRELQSWVNLatgacrtkrdcKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS
Low Complexity Region (SEG)
GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS
Disordered region (IsUnstruct)
***FFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSEL****************
Disordered Region (DISOPRED)
**SFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFM**
Disordered Region (DISEMBL)
GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS
Disordered Region (DISPRO)
*MSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
Q9LQR0	190	LOB domain-containing pro	yes	no	0.839	0.357	0.487	2e-12
Q9SK08	232	LOB domain-containing pro	no	no	0.839	0.293	0.475	8e-12
Q8LBW3	193	LOB domain-containing pro	no	no	0.530	0.222	0.627	3e-09
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.604	0.263	0.551	1e-08
O81322	220	LOB domain-containing pro	no	no	0.617	0.227	0.54	4e-08
Q9SA51	165	LOB domain-containing pro	no	no	0.567	0.278	0.543	7e-08
O22131	262	LOB domain-containing pro	no	no	0.641	0.198	0.480	2e-07
O22132	191	LOB domain-containing pro	no	no	0.617	0.261	0.56	2e-07
Q9SRV3	273	LOB domain-containing pro	no	no	0.592	0.175	0.479	5e-07
A1YKY7	269	Protein IAL1 OS=Zea mays	N/A	no	0.641	0.193	0.461	1e-06

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 47/80 (58%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +K L+   E Q            + D    M YEA +RIRDPVYGC GA+ HLQ+
Sbjct: 70  GASNIIKFLQELPESQ------------RTDAVNSMVYEAEARIRDPVYGCAGAIYHLQR 117

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQ  +  MQ
Sbjct: 118 QVSELQAQLAKAQVEMVNMQ 137

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 46/80 (57%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +K L+   E Q            + D    M YEA +R+RDPVYGC GA+ HLQ+
Sbjct: 92  GASNIIKFLQELPESQ------------RTDAVNSMVYEAGARMRDPVYGCAGAIYHLQR 139

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAK Q  L  MQ
Sbjct: 140 QVSELQAQLAKTQVELVGMQ 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/43 (62%), Positives = 36/43 (83%)

Query: 38  YEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
           +EAN+R+RDPVYGCVGA+ +LQ QVS+LQ +LA AQA +  +Q
Sbjct: 70  FEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 112

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 29  KRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLA 77
           + D    + YEA +R+RDPVYGCVGA+ +LQ+QV  LQ EL  A A LA
Sbjct: 64  REDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLA 112

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|O81322|LBD31_ARATH LOB domain-containing protein 31 OS=Arabidopsis thaliana GN=LBD31 PE=2 SV=2

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query: 31  DCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
           D  + + YEA +R+RDPVYGCVG +  LQ QV  LQAELA  Q  L+ +Q
Sbjct: 67  DAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQ 116

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query: 36  MDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS 81
           M YEAN+RI+DPVYGCVG +  L +Q+  LQ +LA AQA L  +++
Sbjct: 75  MVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

Arabidopsis thaliana (taxid: 3702)

>sp|O22131|LBD18_ARATH LOB domain-containing protein 18 OS=Arabidopsis thaliana GN=LBD18 PE=2 SV=2

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 29  KRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
           + D  + + YEA +RIRDP+YGCV  +  LQ+QV  LQAE++  QA LA ++
Sbjct: 91  RSDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLE 142

Arabidopsis thaliana (taxid: 3702)

>sp|O22132|LBD19_ARATH LOB domain-containing protein 19 OS=Arabidopsis thaliana GN=LBD19 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 34/50 (68%)

Query: 31  DCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
           D  + + YEA +RIRDPVYG VG +  LQ QV  LQAELA  QA L+ +Q
Sbjct: 72  DAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQ 121

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SRV3|LBD20_ARATH LOB domain-containing protein 20 OS=Arabidopsis thaliana GN=LBD20 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/48 (47%), Positives = 33/48 (68%)

Query: 29  KRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGL 76
           + D  + + YEA +R+ DPVYGCV  +  LQ+QV+ LQAEL+  Q+ L
Sbjct: 105 RHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELSVVQSQL 152

Arabidopsis thaliana (taxid: 3702)

>sp|A1YKY7|IAL1_MAIZE Protein IAL1 OS=Zea mays PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/52 (46%), Positives = 34/52 (65%)

Query: 29  KRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
           + D    + YEA+ RIRDPVYGCVG +  LQ  + +LQ +LA+A+  L+  Q
Sbjct: 86  REDAMNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQ 137

Zea mays (taxid: 4577)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
296086071	197	unnamed protein product [Vitis vinifera]	0.839	0.345	0.55	5e-14
147819143	197	hypothetical protein VITISV_021299 [Viti	0.839	0.345	0.55	6e-14
359486539	260	PREDICTED: LOB domain-containing protein	0.839	0.261	0.55	6e-14
225435213	1349	PREDICTED: carbamoyl-phosphate synthase	0.839	0.050	0.525	7e-13
356547196	198	PREDICTED: LOB domain-containing protein	0.839	0.343	0.512	9e-13
255647663	222	unknown [Glycine max]	0.839	0.306	0.525	1e-12
356535674	222	PREDICTED: LOB domain-containing protein	0.839	0.306	0.525	1e-12
388518463	223	unknown [Lotus japonicus]	0.839	0.304	0.525	1e-12
356576187	222	PREDICTED: LOB domain-containing protein	0.839	0.306	0.525	2e-12
297746206	204	unnamed protein product [Vitis vinifera]	0.839	0.333	0.525	2e-12

>gi|296086071|emb|CBI31512.3| unnamed protein product [Vitis vinifera]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 51/80 (63%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +KLL+   E Q            + D    M YEAN+RIRDPVYGC GA+CHLQK
Sbjct: 79  GASNIIKLLQDLPESQ------------RADAVSSMVYEANARIRDPVYGCAGAICHLQK 126

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQA +  MQ
Sbjct: 127 QVSELQAQLAKAQADVINMQ 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819143|emb|CAN78080.1| hypothetical protein VITISV_021299 [Vitis vinifera]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 51/80 (63%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +KLL+   E Q            + D    M YEAN+RIRDPVYGC GA+CHLQK
Sbjct: 79  GASNIIKLLQDLPESQ------------RADAVSSMVYEANARIRDPVYGCAGAICHLQK 126

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQA +  MQ
Sbjct: 127 QVSELQAQLAKAQADVINMQ 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486539|ref|XP_002275402.2| PREDICTED: LOB domain-containing protein 1-like [Vitis vinifera]

 Score = 81.3 bits (199), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/80 (55%), Positives = 51/80 (63%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +KLL+   E Q            + D    M YEAN+RIRDPVYGC GA+CHLQK
Sbjct: 142 GASNIIKLLQDLPESQ------------RADAVSSMVYEANARIRDPVYGCAGAICHLQK 189

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQA +  MQ
Sbjct: 190 QVSELQAQLAKAQADVINMQ 209

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435213|ref|XP_002282042.1| PREDICTED: carbamoyl-phosphate synthase large chain-like [Vitis vinifera]

 Score = 77.8 bits (190), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/80 (52%), Positives = 48/80 (60%), Gaps = 12/80 (15%)

Query: 1    GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
            G S  +K L+   E Q            + D    M YEA +RIRDPVYGC GA+C LQK
Sbjct: 1222 GASNIIKFLQELPEYQ------------RADAVSSMVYEAQARIRDPVYGCTGAICQLQK 1269

Query: 61   QVSELQAELAKAQAGLAFMQ 80
            QVSELQA+LAKAQA L  MQ
Sbjct: 1270 QVSELQAQLAKAQAELVNMQ 1289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547196|ref|XP_003542002.1| PREDICTED: LOB domain-containing protein 11-like [Glycine max]

 Score = 77.8 bits (190), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 49/80 (61%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +K L+   E Q            + D    M YEA +RIRDPVYGC GA+CHLQK
Sbjct: 67  GASNIIKFLQELPESQ------------RADAVASMVYEAGARIRDPVYGCAGAICHLQK 114

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QV+ELQA+LAKAQA +  MQ
Sbjct: 115 QVNELQAQLAKAQAEVVNMQ 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647663|gb|ACU24293.1| unknown [Glycine max]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 49/80 (61%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +K L+   E Q            + D    M YEAN+RIRDPVYGC GA+C LQK
Sbjct: 106 GASNIIKFLQELPESQ------------REDAVSSMVYEANARIRDPVYGCAGAICQLQK 153

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQA +  MQ
Sbjct: 154 QVSELQAQLAKAQAEVVNMQ 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535674|ref|XP_003536369.1| PREDICTED: LOB domain-containing protein 1-like [Glycine max]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 49/80 (61%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +K L+   E Q            + D    M YEAN+RIRDPVYGC GA+C LQK
Sbjct: 106 GASNIIKFLQELPESQ------------REDAVSSMVYEANARIRDPVYGCAGAICQLQK 153

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQA +  MQ
Sbjct: 154 QVSELQAQLAKAQAEVVNMQ 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518463|gb|AFK47293.1| unknown [Lotus japonicus]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 49/80 (61%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +K L+   E Q            + D    M YEAN+RIRDPVYGC GA+C LQK
Sbjct: 103 GASNIIKFLQELPESQ------------RADAVSSMVYEANARIRDPVYGCAGAICQLQK 150

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQA +  MQ
Sbjct: 151 QVSELQAQLAKAQAEMVNMQ 170

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576187|ref|XP_003556215.1| PREDICTED: LOB domain-containing protein 1-like [Glycine max]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 49/80 (61%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +K L+   E Q            + D    M YEAN+RIRDPVYGC GA+C LQK
Sbjct: 106 GASNIIKFLQELPESQ------------RADAVSSMVYEANARIRDPVYGCAGAICQLQK 153

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQA +  MQ
Sbjct: 154 QVSELQAQLAKAQAEVVNMQ 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746206|emb|CBI16262.3| unnamed protein product [Vitis vinifera]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 48/80 (60%), Gaps = 12/80 (15%)

Query: 1   GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQK 60
           G S  +K L+   E Q            + D    M YEA +RIRDPVYGC GA+C LQK
Sbjct: 77  GASNIIKFLQELPEYQ------------RADAVSSMVYEAQARIRDPVYGCTGAICQLQK 124

Query: 61  QVSELQAELAKAQAGLAFMQ 80
           QVSELQA+LAKAQA L  MQ
Sbjct: 125 QVSELQAQLAKAQAELVNMQ 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.555	0.236	0.711	3.1e-12
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.555	0.193	0.688	1e-11
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.530	0.222	0.627	3.2e-10
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.555	0.261	0.6	5.2e-10
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.604	0.263	0.551	2.9e-09
TAIR|locus:2126866	220	LBD31 "LOB domain-containing p	0.617	0.227	0.54	1.6e-08
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.567	0.278	0.543	2e-08
TAIR|locus:2050862	191	LBD19 "LOB domain-containing p	0.641	0.272	0.566	4.2e-08
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.592	0.301	0.5	1.1e-07
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.456	0.165	0.621	1.2e-07

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 32/45 (71%), Positives = 37/45 (82%)

Query:    36 MDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
             M YEA +RIRDPVYGC GA+ HLQ+QVSELQA+LAKAQ  +  MQ
Sbjct:    93 MVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQ 137

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 31/45 (68%), Positives = 36/45 (80%)

Query:    36 MDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
             M YEA +R+RDPVYGC GA+ HLQ+QVSELQA+LAK Q  L  MQ
Sbjct:   115 MVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQ 159

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 27/43 (62%), Positives = 36/43 (83%)

Query:    38 YEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
             +EAN+R+RDPVYGCVGA+ +LQ QVS+LQ +LA AQA +  +Q
Sbjct:    70 FEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ 112

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query:    36 MDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
             M YEAN+R+RDPVYGCVGA+  LQ+Q+  LQA+LA AQA +  ++
Sbjct:    73 MVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLR 117

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query:    29 KRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLA 77
             + D    + YEA +R+RDPVYGCVGA+ +LQ+QV  LQ EL  A A LA
Sbjct:    64 REDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLA 112

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2126866 LBD31 "LOB domain-containing protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query:    31 DCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
             D  + + YEA +R+RDPVYGCVG +  LQ QV  LQAELA  Q  L+ +Q
Sbjct:    67 DAVVTLTYEALARLRDPVYGCVGHIFALQHQVMNLQAELAYVQTQLSTLQ 116

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 25/46 (54%), Positives = 34/46 (73%)

Query:    36 MDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS 81
             M YEAN+RI+DPVYGCVG +  L +Q+  LQ +LA AQA L  +++
Sbjct:    75 MVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRT 120

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2050862 LBD19 "LOB domain-containing protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 30/53 (56%), Positives = 36/53 (67%)

Query:    29 KR-DCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQ 80
             KR D  + + YEA +RIRDPVYG VG +  LQ QV  LQAELA  QA L+ +Q
Sbjct:    69 KRLDAVVTLCYEAMARIRDPVYGSVGHLFSLQHQVMNLQAELAHVQARLSTIQ 121

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query:    29 KRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGL 76
             + D    + YEA +R++DPVYGCVGA+  LQ+QV  LQ EL +  A L
Sbjct:    92 REDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADL 139

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query:    38 YEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQA 74
             YEAN R+RDPVYGC+GA+  LQ+QV  LQAEL   ++
Sbjct:   107 YEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRS 143

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018263001 SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (197 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	81
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	8e-13

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score = 58.0 bits (141), Expect = 8e-13
 Identities = 23/37 (62%), Positives = 30/37 (81%)

Query: 38 YEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQA 74
          YEA++R RDPVYGCVG +  LQ+Q+ +LQAELA  +A
Sbjct: 63 YEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKA 99

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	99.95
COG3416	233	Uncharacterized protein conserved in bacteria [Fun	87.19
PF13334	95	DUF4094: Domain of unknown function (DUF4094)	87.04
PRK10265	101	chaperone-modulator protein CbpM; Provisional	83.75
PF09006	46	Surfac_D-trimer: Lung surfactant protein D coiled-	82.59
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	80.8
PF03242	93	LEA_3: Late embryogenesis abundant protein; InterP	80.57

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=99.95  E-value=4.2e-28  Score=162.66  Aligned_cols=64  Identities=48%  Similarity=0.727  Sum_probs=62.8

Q ss_pred             CcchHHHHHhhhhhhhHHHHhhhccccCHHHHHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 047804            1 GMSFFLKLLESFRELQSWVNLATGACRTKRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGL   76 (81)
Q Consensus         1 G~snv~k~l~~~~~~~r~~~~~~g~~~~k~da~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~l   76 (81)
                      |+|||.|||++++|++|            +++|+||+|||++|.+||||||+|+|++||+|+..+++||+.++++|
T Consensus        38 G~sni~k~L~~~~~~~R------------~~a~~Sl~yEA~~R~~dPv~Gc~G~i~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   38 GVSNISKMLQELPPEQR------------EDAMRSLVYEANARARDPVYGCVGIISQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             chhHHHHHHHhCCccch------------hhHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            89999999999999999            99999999999999999999999999999999999999999999876

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.19  E-value=2  Score=33.19  Aligned_cols=53  Identities=13%  Similarity=0.152  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047804           29 KRDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFMQS   81 (81)
Q Consensus        29 k~da~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~q~   81 (81)
                      |++.+..+|-|+-++.-|--|=-+-+|.-+++-|+.++.+++.++.+++.+|.
T Consensus        24 rD~~Ae~lI~~~~~~qP~a~Y~laQ~vliqE~ALk~a~~~i~eLe~ri~~lq~   76 (233)
T COG3416          24 RDPQAEALIAEAVAKQPDAAYYLAQRVLIQEQALKKASTQIKELEKRIAILQA   76 (233)
T ss_pred             CChHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            69999999999999999999999999999999999999999999999987763

>PF13334 DUF4094: Domain of unknown function (DUF4094)

Probab=87.04  E-value=0.68  Score=30.78  Aligned_cols=25  Identities=40%  Similarity=0.445  Sum_probs=21.2

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHH
Q 047804           51 CVGAVCHLQKQVSELQAELAKAQAG   75 (81)
Q Consensus        51 c~G~I~~Lq~qi~~lq~eLa~~~~~   75 (81)
                      -.-+|..|.+.|..++.||+.++++
T Consensus        71 Th~aIq~LdKtIS~LEMELAaARa~   95 (95)
T PF13334_consen   71 THEAIQSLDKTISSLEMELAAARAE   95 (95)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3457889999999999999999863

>PRK10265 chaperone-modulator protein CbpM; Provisional

Probab=83.75  E-value=2.6  Score=27.66  Aligned_cols=31  Identities=13%  Similarity=0.190  Sum_probs=27.8

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804           49 YGCVGAVCHLQKQVSELQAELAKAQAGLAFM   79 (81)
Q Consensus        49 ~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~   79 (81)
                      +-.++.|.+|-.||+.+++|+..++++|..|
T Consensus        67 ~~gialvl~LLd~i~~Lr~el~~L~~~l~~~   97 (101)
T PRK10265         67 WPGIAVALTLLDEIAHLKQENRLLRQRLSRF   97 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467899999999999999999999999766

>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46

Probab=82.59  E-value=2.9  Score=25.16  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcc
Q 047804           55 VCHLQKQVSELQAELAKAQAGLAFMQ   80 (81)
Q Consensus        55 I~~Lq~qi~~lq~eLa~~~~~la~~q   80 (81)
                      |..|.+|+..++.++..+|+-+..|+
T Consensus         1 i~aLrqQv~aL~~qv~~Lq~~fs~yK   26 (46)
T PF09006_consen    1 INALRQQVEALQGQVQRLQAAFSQYK   26 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56789999999999999998887764

It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=80.80  E-value=3.6  Score=25.58  Aligned_cols=24  Identities=33%  Similarity=0.494  Sum_probs=17.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 047804           55 VCHLQKQVSELQAELAKAQAGLAF   78 (81)
Q Consensus        55 I~~Lq~qi~~lq~eLa~~~~~la~   78 (81)
                      |-.|+..|..|++|++.++++++.
T Consensus        23 v~EL~~RIa~L~aEI~R~~~~~~~   46 (59)
T PF06698_consen   23 VEELEERIALLEAEIARLEAAIAK   46 (59)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777777888888777777653

The function of this family is unknown.

>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []

Probab=80.57  E-value=0.49  Score=31.62  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=17.1

Q ss_pred             HHHHhhhccCCccccHHHHHH
Q 047804           37 DYEANSRIRDPVYGCVGAVCH   57 (81)
Q Consensus        37 vYEA~aR~rDPV~Gc~G~I~~   57 (81)
                      -.+-..|.+|||-|+|-...+
T Consensus        58 ~~~~~~W~pDPvTGyyrPen~   78 (93)
T PF03242_consen   58 SKEKSSWMPDPVTGYYRPENH   78 (93)
T ss_pred             cccccccccCCCCccccCCCC
Confidence            567789999999999976543

This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	88.8
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	87.72
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	82.25

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=88.80  E-value=0.74  Score=28.92  Aligned_cols=29  Identities=14%  Similarity=0.122  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047804           53 GAVCHLQKQVSELQAELAKAQAGLAFMQS   81 (81)
Q Consensus        53 G~I~~Lq~qi~~lq~eLa~~~~~la~~q~   81 (81)
                      ..|..|+.+|....+++..++.+|..|||
T Consensus        40 ~~I~eLEk~L~ekd~eI~~LqseLDKfrS   68 (72)
T 3nmd_A           40 ALIDELELELDQKDELIQMLQNELDKYRS   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46999999999999999999999999987

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=87.72  E-value=0.73  Score=25.02  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804           53 GAVCHLQKQVSELQAELAKAQAGLAFM   79 (81)
Q Consensus        53 G~I~~Lq~qi~~lq~eLa~~~~~la~~   79 (81)
                      |.|..|.++|..++.|++.++-+++..
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaal   28 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAAL   28 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999998888753

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=82.25  E-value=1.9  Score=26.61  Aligned_cols=28  Identities=29%  Similarity=0.330  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 047804           54 AVCHLQKQVSELQAELAKAQAGLAFMQS   81 (81)
Q Consensus        54 ~I~~Lq~qi~~lq~eLa~~~~~la~~q~   81 (81)
                      .|..|+..+..-.+++..++.+|..||+
T Consensus        26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qs   53 (67)
T 1zxa_A           26 RIKELEKRLSEKEEEIQELKRKLHKCQS   53 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778999999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	82.19
d1hcia4	114	alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}	80.99

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.19  E-value=1.2  Score=24.53  Aligned_cols=27  Identities=15%  Similarity=0.017  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 047804           52 VGAVCHLQKQVSELQAELAKAQAGLAF   78 (81)
Q Consensus        52 ~G~I~~Lq~qi~~lq~eLa~~~~~la~   78 (81)
                      +-.|..||+|+..+++|...++.....
T Consensus        32 i~YI~~Lq~~~~~L~~e~~~L~~~~~~   58 (61)
T d1uklc_          32 IDYIKYLQQVNHKLRQENMVLKLANQK   58 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999988764

>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: Spectrin repeat
family: Spectrin repeat
domain: alpha-actinin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.99  E-value=1.6  Score=25.33  Aligned_cols=50  Identities=8%  Similarity=0.028  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhhhccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 047804           30 RDCKLIMDYEANSRIRDPVYGCVGAVCHLQKQVSELQAELAKAQAGLAFM   79 (81)
Q Consensus        30 ~da~~SlvYEA~aR~rDPV~Gc~G~I~~Lq~qi~~lq~eLa~~~~~la~~   79 (81)
                      .+-+.+-+-|+..-..+|++|-.+.|..+.++...++++|..-+..+...
T Consensus        14 a~~~~~Wi~e~~~~l~~~~~~~~~~ve~~l~~h~~~e~el~~~~~~i~~l   63 (114)
T d1hcia4          14 ANAIGPWIQNKMEEIARSSIQITGALEDQMNQLKQYEHNIINYKNNIDKL   63 (114)
T ss_dssp             HHHHHHHHHHHHHHHHSCSCTTTTSTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667788888889999999999999999999999999988887654