Citrus Sinensis ID: 047807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
NLREKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGTLSKEDSLAIKV
Secondary Structure (PSIPRED)
cccccccccccEEEEEEcccccccccccccEEEccEEEccEEEEEEEEEEEEccccccccEEEEEEEEcccccccccccEEEEEEEEEEEEcccccccEEEEccccEEEEccccccccccccccHHHHcccccccEEccEEEEEEEEEEEccccccccccEEccEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEcHHHHHHHHccccccccEEEccEEEEEEEEEEEEEcccccccEEEEEEEEcccccccccccEEEEEEEEEEEEcccccEEEEEccccEEEEEcccccccccccccEHHHcccccccEEEccEEEEEEEEEEEEEcccEEEEEEEEEEEEEc
Coil and Loop (DISEMBL)
nlrekrslppadyIFKIKSFnlladstvdgfesgvfesggyywcvctrlvfypkgkgssdhlSLYLkidesnsypnaawsVNVCYRLFVYDQIRKDYLAVQDaksgvrtfdqqtselGFDKFLTLAELNQHLKGYLlnntctfgaeiyvikptdtegtlskedslaikv
Flexible Loop (DISEMBL)
nlrekrslppadYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIkptdtegtlskedslaikv
Low Complexity Region (SEG)
NLREKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGTLSKEDSLAIKV
Disordered region (IsUnstruct)
***********DYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP*****************
Disordered Region (DISOPRED)
********PPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGTLSKEDSLAIK*
Disordered Region (DISEMBL)
NLREKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGTLSKEDSLAIKV
Disordered Region (DISPRO)
****KRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGTLSKEDSLAIKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NLREKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGTLSKEDSLAIKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	169	2.2.26 [Sep-21-2011]
Q9FPT1	1116	Ubiquitin carboxyl-termin	no	no	0.668	0.101	0.360	7e-12
Q84WU2	1115	Ubiquitin carboxyl-termin	no	no	0.668	0.101	0.344	3e-11

>sp|Q9FPT1|UBP12_ARATH Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 66/122 (54%), Gaps = 9/122 (7%)

Query: 33  SGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQ 92
           S VF  GGY W    R++ +PKG  + DHLS+YL + ++ S P   WS    + L V +Q
Sbjct: 74  SDVFVVGGYKW----RILIFPKG-NNVDHLSMYLDVSDAASLP-YGWSRYAQFSLAVVNQ 127

Query: 93  IRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP 152
           I   Y   ++ +     F+ + S+ GF  F+ L+EL    +GYL+N+T    AE+ V K 
Sbjct: 128 IHTRYTVRKETQ---HQFNARESDWGFTSFMPLSELYDPSRGYLVNDTVLVEAEVAVRKV 184

Query: 153 TD 154
            D
Sbjct: 185 LD 186

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|Q84WU2|UBP13_ARATH Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 9/122 (7%)

Query: 33  SGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQ 92
           S VF  GGY W    R++ +PKG  + DHLS+YL + ++ + P   WS    + L V +Q
Sbjct: 73  SDVFVVGGYKW----RILIFPKG-NNVDHLSMYLDVADAANLP-YGWSRYSQFSLAVVNQ 126

Query: 93  IRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP 152
           +   Y   ++ +     F+ + S+ GF  F+ L+EL +  +GYL+N+T    AE+ V K 
Sbjct: 127 VNNRYSIRKETQ---HQFNARESDWGFTSFMPLSELYEPTRGYLVNDTVLIEAEVAVRKV 183

Query: 153 TD 154
            D
Sbjct: 184 LD 185

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
224074494	321	predicted protein [Populus trichocarpa]	0.863	0.454	0.506	6e-35
224139110	324	predicted protein [Populus trichocarpa]	0.917	0.478	0.472	6e-33
225429035	330	PREDICTED: MATH domain-containing protei	0.852	0.436	0.434	4e-30
296083026	672	unnamed protein product [Vitis vinifera]	0.852	0.214	0.434	8e-30
296083023	389	unnamed protein product [Vitis vinifera]	0.852	0.370	0.427	2e-29
225429037	261	PREDICTED: uncharacterized protein LOC10	0.852	0.551	0.427	2e-29
225429033	331	PREDICTED: uncharacterized protein LOC10	0.852	0.435	0.427	2e-29
359475437	314	PREDICTED: uncharacterized protein LOC10	0.852	0.458	0.427	3e-29
449441502	316	PREDICTED: BTB/POZ and MATH domain-conta	0.822	0.439	0.455	1e-28
449522688	316	PREDICTED: BTB/POZ and MATH domain-conta	0.822	0.439	0.455	1e-28

>gi|224074494|ref|XP_002304380.1| predicted protein [Populus trichocarpa] gi|118485977|gb|ABK94833.1| unknown [Populus trichocarpa] gi|222841812|gb|EEE79359.1| predicted protein [Populus trichocarpa]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 78/154 (50%), Positives = 99/154 (64%), Gaps = 8/154 (5%)

Query: 3   REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSD-- 60
           R  R LPPA Y FKI++F+LLA++ +D FESG FE G Y W    RL  YP G   ++  
Sbjct: 22  RSTRDLPPAHYTFKIENFSLLANAKIDNFESGDFEVGSYKW----RLRLYPNGNKKNNGD 77

Query: 61  -HLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
            H+SLYL    SN+ P   W VNV +RLFVY+QI+  YL +Q AK  VR F    +ELGF
Sbjct: 78  GHISLYLAFSNSNALP-FGWEVNVNFRLFVYNQIQDKYLTIQYAKGRVRRFHGMKTELGF 136

Query: 120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPT 153
           D+ + L   N   KGYL+++ C FGAEI+VIKPT
Sbjct: 137 DQLIPLTIFNDESKGYLIDDRCIFGAEIFVIKPT 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139110|ref|XP_002326770.1| predicted protein [Populus trichocarpa] gi|222834092|gb|EEE72569.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/163 (47%), Positives = 100/163 (61%), Gaps = 8/163 (4%)

Query: 1   NLREKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSD 60
           N R  R LPPA Y FKI++F+LL+++ VD  ESG FE   Y W    RL  +P G   S+
Sbjct: 13  NTRSIRDLPPAHYAFKIENFSLLSNTKVDSVESGDFEVDSYKW----RLCLHPNGNKKSN 68

Query: 61  ---HLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSEL 117
              H+SLYL   +SN+ P   W VNV ++LFVY+QI   YL +Q+A   VR F    +E+
Sbjct: 69  GDGHISLYLAFSKSNA-PPLGWEVNVDFKLFVYNQIHDKYLTIQNANGRVRRFHGMKTEM 127

Query: 118 GFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGTLS 160
           GFD+ L L   N   KGYL+++ CTFGAEI+VIK T     LS
Sbjct: 128 GFDQLLPLTLFNDESKGYLIDDCCTFGAEIFVIKHTSKGECLS 170

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429035|ref|XP_002268000.1| PREDICTED: MATH domain-containing protein At5g43560-like [Vitis vinifera]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 97/152 (63%), Gaps = 8/152 (5%)

Query: 3   REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSD-- 60
           R  RS+ PA Y+FK++S ++L ++ ++ +ESG FE GGY W +C     YP G   SD  
Sbjct: 27  RTLRSIQPAHYLFKVESLSVLLNTDIEKYESGSFEVGGYKWSLC----IYPNGNKKSDGE 82

Query: 61  -HLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
            H+SLYL+I E+ + P   W V V ++LFV++ I + YL VQDA   VR F+   +  GF
Sbjct: 83  GHISLYLEISEAQNLP-LGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRHFNAMKTRCGF 141

Query: 120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151
            +FL+L  L     GYL++++C FGAE++VIK
Sbjct: 142 AQFLSLDVLKDPRNGYLMDDSCIFGAEVFVIK 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083026|emb|CBI22430.3| unnamed protein product [Vitis vinifera]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 66/152 (43%), Positives = 97/152 (63%), Gaps = 8/152 (5%)

Query: 3   REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSD-- 60
           R  RS+ PA Y+FK++S ++L ++ ++ +ESG FE GGY W +C     YP G   SD  
Sbjct: 27  RTLRSIQPAHYLFKVESLSVLLNTDIEKYESGSFEVGGYKWSLC----IYPNGNKKSDGE 82

Query: 61  -HLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
            H+SLYL+I E+ + P   W V V ++LFV++ I + YL VQDA   VR F+   +  GF
Sbjct: 83  GHISLYLEISEAQNLP-LGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRHFNAMKTRCGF 141

Query: 120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151
            +FL+L  L     GYL++++C FGAE++VIK
Sbjct: 142 AQFLSLDVLKDPRNGYLMDDSCIFGAEVFVIK 173

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296083023|emb|CBI22427.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 97/152 (63%), Gaps = 8/152 (5%)

Query: 3   REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSD-- 60
           R  RS+ PA Y+F+++S ++L D++++ +ESG FE GGY W    RL  YP G   SD  
Sbjct: 86  RTLRSIQPAHYLFRVESMSVLLDTSIEKYESGSFEVGGYKW----RLCLYPNGNKKSDGD 141

Query: 61  -HLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
            H+SLYL I ++ + P   W V V ++LFV++ I ++YL VQD    VR F+   ++ GF
Sbjct: 142 GHISLYLVISDTQNLP-LGWEVTVSFKLFVFNHIHEEYLTVQDTDGKVRHFNVMKTQCGF 200

Query: 120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151
            +FL L  L     GYL++++C FGAE++VIK
Sbjct: 201 AQFLPLDVLTDPCNGYLMDDSCIFGAEVFVIK 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429037|ref|XP_002265732.1| PREDICTED: uncharacterized protein LOC100258339 [Vitis vinifera]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 97/152 (63%), Gaps = 8/152 (5%)

Query: 3   REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSD-- 60
           R  RS+ PA Y+F+++S ++L D++++ +ESG FE GGY W    RL  YP G   SD  
Sbjct: 11  RTLRSIQPAHYLFRVESMSVLLDTSIEKYESGSFEVGGYKW----RLCLYPNGNKKSDGD 66

Query: 61  -HLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
            H+SLYL I ++ + P   W V V ++LFV++ I ++YL VQD    VR F+   ++ GF
Sbjct: 67  GHISLYLVISDTQNLP-LGWEVTVSFKLFVFNHIHEEYLTVQDTDGKVRHFNVMKTQCGF 125

Query: 120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151
            +FL L  L     GYL++++C FGAE++VIK
Sbjct: 126 AQFLPLDVLTDPCNGYLMDDSCIFGAEVFVIK 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429033|ref|XP_002265318.1| PREDICTED: uncharacterized protein LOC100259955 isoform 1 [Vitis vinifera]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 8/152 (5%)

Query: 3   REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK---GSS 59
           R  RS+ PA Y+F+++S ++L ++ ++ +ESG F+ GGY W    RL  YP G    G  
Sbjct: 28  RTLRSIKPAHYLFRVESVSVLLNTDIEKYESGSFKVGGYRW----RLCLYPNGNKKSGGE 83

Query: 60  DHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
           DH+SLYL+I ++   P   W V V ++LFV++ I + YL VQDA   VR F+   S  GF
Sbjct: 84  DHISLYLEISDAQKLP-VGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRDFNVMKSRCGF 142

Query: 120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151
            +FL+L  L     GYL++++C FGAE++VIK
Sbjct: 143 AQFLSLDVLKDPCNGYLMDDSCIFGAEVFVIK 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475437|ref|XP_003631686.1| PREDICTED: uncharacterized protein LOC100259955 isoform 2 [Vitis vinifera]

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 65/152 (42%), Positives = 96/152 (63%), Gaps = 8/152 (5%)

Query: 3   REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK---GSS 59
           R  RS+ PA Y+F+++S ++L ++ ++ +ESG F+ GGY W    RL  YP G    G  
Sbjct: 11  RTLRSIKPAHYLFRVESVSVLLNTDIEKYESGSFKVGGYRW----RLCLYPNGNKKSGGE 66

Query: 60  DHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
           DH+SLYL+I ++   P   W V V ++LFV++ I + YL VQDA   VR F+   S  GF
Sbjct: 67  DHISLYLEISDAQKLP-VGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRDFNVMKSRCGF 125

Query: 120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151
            +FL+L  L     GYL++++C FGAE++VIK
Sbjct: 126 AQFLSLDVLKDPCNGYLMDDSCIFGAEVFVIK 157

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441502|ref|XP_004138521.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 95/147 (64%), Gaps = 8/147 (5%)

Query: 8   LPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKG---KGSSDHLSL 64
           +PPA Y  KI+SF+LL  ++VD FESG FE+GGY W    +LV +P G   K  +DH+SL
Sbjct: 19  VPPAHYTVKIESFSLLTKNSVDQFESGEFEAGGYKW----KLVLHPHGDKSKNGNDHISL 74

Query: 65  YLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLT 124
           YL+I  ++S    +W V V YRLF+ DQ + +YL V+D K   R F     + GFDK+++
Sbjct: 75  YLEIAGTDSL-QPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYIS 133

Query: 125 LAELNQHLKGYLLNNTCTFGAEIYVIK 151
           L E  +   GYL+++ C FGAE++V K
Sbjct: 134 LKEFKESSNGYLVDDVCVFGAEVFVCK 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522688|ref|XP_004168358.1| PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cucumis sativus]

 Score =  130 bits (328), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 67/147 (45%), Positives = 95/147 (64%), Gaps = 8/147 (5%)

Query: 8   LPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKG---KGSSDHLSL 64
           +PPA Y  KI+SF+LL  ++VD FESG FE+GGY W    +LV +P G   K  +DH+SL
Sbjct: 19  VPPAHYTVKIESFSLLTKNSVDQFESGEFEAGGYKW----KLVLHPHGDKSKNGNDHISL 74

Query: 65  YLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLT 124
           YL+I  ++S    +W V V YRLF+ DQ + +YL V+D K   R F     + GFDK+++
Sbjct: 75  YLEIAGTDSL-QPSWEVFVVYRLFLLDQNKDNYLTVEDGKWKPRRFRGMKKQWGFDKYIS 133

Query: 125 LAELNQHLKGYLLNNTCTFGAEIYVIK 151
           L E  +   GYL+++ C FGAE++V K
Sbjct: 134 LKEFKESSNGYLVDDVCVFGAEVFVCK 160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	169
TAIR|locus:2089045	309	AT3G17380 "AT3G17380" [Arabido	0.798	0.436	0.383	1.8e-23
TAIR|locus:2179744	351	AT5G26260 "AT5G26260" [Arabido	0.863	0.415	0.369	1.3e-22
TAIR|locus:2179699	350	AT5G26280 "AT5G26280" [Arabido	0.863	0.417	0.369	3.5e-20
TAIR|locus:2151049	333	AT5G26290 "AT5G26290" [Arabido	0.781	0.396	0.397	1.2e-19
TAIR|locus:2055998	420	AT2G04170 "AT2G04170" [Arabido	0.775	0.311	0.373	3.7e-18
TAIR|locus:2118465	297	AT4G09770 "AT4G09770" [Arabido	0.816	0.464	0.315	4.1e-17
TAIR|locus:2151054	349	AT5G26300 "AT5G26300" [Arabido	0.846	0.409	0.322	6e-17
TAIR|locus:2151064	352	AT5G26320 "AT5G26320" [Arabido	0.852	0.409	0.318	1.8e-16
TAIR|locus:2053674	365	AT2G15710 "AT2G15710" [Arabido	0.911	0.421	0.331	2.2e-14
TAIR|locus:2092359	375	AT3G20380 "AT3G20380" [Arabido	0.798	0.36	0.331	6.8e-14

TAIR|locus:2089045 AT3G17380 "AT3G17380" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 56/146 (38%), Positives = 86/146 (58%)

Query:     9 PPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKG---KGSSDHLSLY 65
             PP  Y+ KI+SF+LL    ++ +E+  FE+GGY W    +LV YP G   K + DH+S+Y
Sbjct:    18 PPTHYMVKIESFSLLTKHAIERYETESFEAGGYKW----KLVLYPNGNKSKNTKDHVSVY 73

Query:    66 LKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTL 125
             L + +S+S  +  W V   +RL++ DQ + +YL +Q  +   R F     E GFDKF+  
Sbjct:    74 LSLADSSSL-SPGWEVYAVFRLYLLDQNKDNYLILQGNE---RRFHSVKREWGFDKFIPT 129

Query:   126 AELNQHLKGYLLNNTCTFGAEIYVIK 151
                +    GYL+ +TC FGA+++V K
Sbjct:   130 GTFSDASNGYLMEDTCMFGADVFVSK 155

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2179744 AT5G26260 "AT5G26260" [Arabidopsis thaliana (taxid:3702)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 58/157 (36%), Positives = 93/157 (59%)

Query:     3 REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK---GSS 59
             RE R   P+  I  I SF+++ D   + +ES +FE+ GY W    RLV Y KG    G +
Sbjct:    53 RELRDERPSSKIVTITSFSVIKDRG-EPYESSIFEAAGYKW----RLVLYVKGNPKGGIN 107

Query:    60 DHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
             +H+SLY +I+E+ + P   W VNV  +LFV+++  K YL+V D    V+ ++    E GF
Sbjct:   108 NHISLYARIEETETLPRG-WEVNVDLKLFVHNRKLKKYLSVTDGT--VKRYNDAKKEWGF 164

Query:   120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTE 156
              + ++L       +GYL+ +T +FGAEI+++ PT+ +
Sbjct:   165 TQLISLPTFYNANEGYLVQDTASFGAEIFIVNPTEKQ 201

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2179699 AT5G26280 "AT5G26280" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 58/157 (36%), Positives = 86/157 (54%)

Query:     3 REKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK---GSS 59
             RE R   P+  I  I SF+++     + +ES VFE+ GY W    RLV Y  G    G +
Sbjct:    52 RELREERPSSKIVTITSFSVIKGRG-EPYESSVFEAAGYKW----RLVLYVNGNKNDGGN 106

Query:    60 DHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGF 119
             DH+SLY +I+E+NS P   W VNV  +LFV++     YL V D    V+ ++    E GF
Sbjct:   107 DHISLYARIEETNSLP-LGWEVNVDLKLFVHNGKLHKYLTVTDGL--VKRYNNAKKEWGF 163

Query:   120 DKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTE 156
              + +  +      +GYL  +T +FGAEI+++KP   +
Sbjct:   164 GQLIPRSTFYNANEGYLDQDTGSFGAEIFIVKPAQQQ 200

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

TAIR|locus:2151049 AT5G26290 "AT5G26290" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 58/146 (39%), Positives = 80/146 (54%)

Query:    10 PADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK---GSSDHLSLYL 66
             P+D I  I SF+++  +  + +ES VFE+ GY W    RLV Y  G    G  DH+SLY 
Sbjct:    52 PSDKILSITSFSIIR-TRPEPYESSVFEAVGYKW----RLVLYVNGNEKDGGKDHVSLYA 106

Query:    67 KIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLA 126
             KI E+ S P   W VNV  +LFVY+     YL V      V+ ++  T ELG+ + +  +
Sbjct:   107 KIVETESLP-VGWEVNVDLKLFVYNGKLNKYLIVT-----VKRYNNATKELGYGQLIPQS 160

Query:   127 ELNQHLKGYLLNNTCTFGAEIYVIKP 152
                    GY   +T TFGAEIY++KP
Sbjct:   161 TFYDGNDGYREQDTGTFGAEIYIVKP 186

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2055998 AT2G04170 "AT2G04170" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 3.7e-18, P = 3.7e-18
 Identities = 53/142 (37%), Positives = 82/142 (57%)

Query:    10 PADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK---GSSDHLSLYL 66
             P++ I  I SF+++     + +ES VFE+GGY W    RLV Y  G    G ++H+SLY+
Sbjct:   129 PSNKILTITSFSVIKGRG-EPYESSVFEAGGYKW----RLVLYVNGNQNDGGNNHISLYV 183

Query:    67 KIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLA 126
             +I+E+ S P   W VNV  +LFVY+  ++ YL V+D    V+ ++    E G+ K + L 
Sbjct:   184 RIEETESLPKG-WEVNVELKLFVYNGKQRKYLIVKDGI--VKRYNDAKKEWGYGKLIPLT 240

Query:   127 ELNQHLKGYLLNNTCTFGAEIY 148
                   +GYL  +  +FGAEI+
Sbjct:   241 TFLDTNEGYLEQDIASFGAEIF 262

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118465 AT4G09770 "AT4G09770" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 48/152 (31%), Positives = 79/152 (51%)

Query:     6 RSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK---GSSDHL 62
             R   P+ Y+ K+  F+ +  S    +ES  F+ GG+ W    RL+FYP GK   G  DH+
Sbjct:     5 REEAPSSYLMKLVGFSEVKFSH-QPYESADFDVGGHKW----RLIFYPAGKLEEGGKDHV 59

Query:    63 SLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKF 122
             S+Y +I+       A+  ++   + F+Y+   K Y   QD    ++ ++++  E GF + 
Sbjct:    60 SIYARIENVG----ASMQIDAELKFFIYNHNNKQYSVFQDGT--MKHYNKEKKECGFAQM 113

Query:   123 LTLAELNQHLKGYLLNNTCTFGAEIYVIKPTD 154
             L  ++ N    GY+  N C  G EI+VIKP +
Sbjct:   114 LLFSKFNDPKNGYIDGNACIVGVEIFVIKPIE 145

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151054 AT5G26300 "AT5G26300" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 6.0e-17, P = 6.0e-17
 Identities = 51/158 (32%), Positives = 86/158 (54%)

Query:     2 LREKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK---GS 58
             LR++R   P+  I  I +F+++    V+ +ES VFE+ GY W    RLV Y  G      
Sbjct:    54 LRDER---PSSKILTITNFSVIK-GRVEPYESSVFEAAGYKW----RLVLYVNGNPNDSG 105

Query:    59 SDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELG 118
             +DH+SLY++I+E+   P   W VNV  +LF+++     YLA+ D    ++ ++    E G
Sbjct:   106 NDHISLYVRIEETEYLPRG-WEVNVDLKLFIHNGKLNKYLAISDGT--LKLYNDAKREWG 162

Query:   119 FDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTE 156
             F + +       +  GY+  +  +FGAEI+++KP   +
Sbjct:   163 FGQLIPHVTF-YNTYGYIEQDIGSFGAEIFIVKPAQQQ 199

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

TAIR|locus:2151064 AT5G26320 "AT5G26320" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 51/160 (31%), Positives = 86/160 (53%)

Query:     2 LREKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK----- 56
             LRE+R   P+  I  I SF+++   + + FES  FE+ GY W    R + +  G      
Sbjct:    54 LREER---PSSKIVTITSFSVIKGRS-EAFESSTFEAAGYKW----RFMLFVNGNQNDPD 105

Query:    57 GSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSE 116
             G  ++++LY+ I E+ S+P   W VNV  +LFV+++    YL V D    V+ ++   + 
Sbjct:   106 GGHENMALYVGIKETESFPRG-WEVNVDLKLFVHNEKLHKYLTVSDGT--VKRYEAAKTY 162

Query:   117 LGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTE 156
              GF   +    L    +GY+L++T +FGAEI ++ P + +
Sbjct:   163 WGFGNLIPRTTLLDPNEGYILHDTLSFGAEISIVNPAEKQ 202

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2053674 AT2G15710 "AT2G15710" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 57/172 (33%), Positives = 80/172 (46%)

Query:     1 NLREKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKG----K 56
             NLRE    PP+ Y  KI   N L+  T D +ES  F SGGY W    RLV YPKG    K
Sbjct:    92 NLREH---PPSSYSLKI---NKLSQLTFDKYESHRFLSGGYNW----RLVIYPKGNEKDK 141

Query:    57 GSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSE 116
             GS   +S+Y++ D +     +   V      FVY++    Y  +QD +  V+ F+   + 
Sbjct:   142 GSG-FISMYVEFDNTKVSSTSPMEVFAYIIFFVYNKKENKYFTIQDVE--VKRFNALRTV 198

Query:   117 LGFDKFLTLAELNQHLKGYLLNNT-CTFGAEIYVIKPTDTEGTLSKEDSLAI 167
              G  + L+L   N    GY      C FG ++ V  P      +S ++ L I
Sbjct:   199 WGLSQVLSLETFNDLENGYTFEGEQCEFGVDVMVASPITKWEVVSFDEKLDI 250

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092359 AT3G20380 "AT3G20380" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 48/145 (33%), Positives = 71/145 (48%)

Query:     8 LPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKG---KGSSDHLSL 64
             +PP+ Y FKI+S+N        GFES  F +GGY W     L  +P G    G+S ++SL
Sbjct:    84 VPPSSYSFKIESYNSFLKIPYLGFESRPFAAGGYNWV----LKVHPNGLTWDGTSGYVSL 139

Query:    65 YLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLT 124
             Y+ + ES     A   V    R ++++   K Y  VQD  + V  F      LGF K ++
Sbjct:   140 YVLLHESTPI-TADQVVYADLRFYIFNNNEKKYFTVQD--TNVWKFTAPKRLLGFPKVMS 196

Query:   125 LAELNQHLKGYLLNNTCTFGAEIYV 149
               +      GY+ +N C FG ++ V
Sbjct:   197 ADQFEDLRNGYIYDNHCEFGVDVTV 221

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_III0806 SubName- Full=Putative uncharacterized protein; (321 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	169
cd00121	126	cd00121, MATH, MATH (meprin and TRAF-C homology) d	5e-19
pfam00917	116	pfam00917, MATH, MATH domain	2e-09
cd03776	147	cd03776, MATH_TRAF6, Tumor Necrosis Factor Recepto	7e-04
smart00061	95	smart00061, MATH, meprin and TRAF homology	0.004

>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

 Score = 77.4 bits (191), Expect = 5e-19
 Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 14/136 (10%)

Query: 13  YIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSS-DHLSLYLKIDES 71
           + +KI +F+ L   ++    S  FE GGY W    R+  YP G G S D+LSLYL++D+ 
Sbjct: 3   HTWKIVNFSELEGESI---YSPPFEVGGYKW----RIRIYPNGDGESGDYLSLYLELDKG 55

Query: 72  NSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQH 131
            S     WSV   + L + +Q     L+          F ++ S  GF KF++  +L   
Sbjct: 56  ESDLE-KWSVRAEFTLKLVNQNGGKSLSKSFTH---VFFSEKGSGWGFPKFISWDDLED- 110

Query: 132 LKGYLLNNTCTFGAEI 147
              YL++++ T   E+
Sbjct: 111 -SYYLVDDSLTIEVEV 125

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH domain has been shown to bind peptide/protein substrates in TRAFs and HAUSP. It is possible that the MATH domain in other members of this superfamily also interacts with various protein substrates. The TRAF domain may also be involved in the trimerization of TRAFs. Based on homology, it is postulated that the MATH domain in meprins may be involved in its tetramer assembly and that the MATH domain, in general, may take part in diverse modular arrangements defined by adjacent multimerization domains. Length = 126

>gnl|CDD|216189 pfam00917, MATH, MATH domain

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 19/134 (14%)

Query: 17  IKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPN 76
           IK+F+ + +     + S   E  G  W +      Y  G      L LYL  ++      
Sbjct: 1   IKNFSKIKEGENY-YTSPYEERFGIPWRLR----IYRNG----GFLGLYLHCEKGEKDEL 51

Query: 77  AAWSVNVCYRLFVYDQIRKDYLAVQDAKSG-VRTFDQQTSELGFDKFLTLAELNQHLKGY 135
             WS+   + L +     K        K      F + T   G+ KF++  +L      Y
Sbjct: 52  LGWSIETEFTLKLVSDNGKS-----LTKRNKSHVFTKPTGY-GWGKFISWDDLE---NDY 102

Query: 136 LLNNTCTFGAEIYV 149
           ++++T    AE+ +
Sbjct: 103 VVDDTIIIEAEVKI 116

This motif has been called the Meprin And TRAF-Homology (MATH) domain. This domain is hugely expanded in the nematode C. elegans. Length = 116

>gnl|CDD|239745 cd03776, MATH_TRAF6, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

 Score = 37.7 bits (88), Expect = 7e-04
 Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 15/147 (10%)

Query: 13  YIFKIKSFNLLADSTVDGFESGVFESGGYY-----WCVCTRLVFYPKGKGSSDHLSLYLK 67
           Y++KIK+F+ L  S   G    V  S G+Y     + +C RL          +++SL++ 
Sbjct: 3   YVWKIKNFSNLRRSMEAG-SPVVIHSPGFYTSPPGYKLCARLNLSLPEARCPNYISLFVH 61

Query: 68  IDESNSYPNAAWSVNVCYRLFVYDQ--IRKDYLAVQDAKSGVRTFDQQTSEL-----GFD 120
           + +  +  +  W       L + DQ   R++      +K  +  F + T++      G+ 
Sbjct: 62  LMQGENDSHLDWPFQGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYV 121

Query: 121 KFLTLAELNQHLKGYLLNNTCTFGAEI 147
           +F  + +L Q  +G++ N+T     E+
Sbjct: 122 EFAHIEDLLQ--RGFVKNDTLLIKIEV 146

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kappaB, plays a pivotal role in Drosophila development and innate immunity. TRAF6 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal alpha helical region (TRAF-N), and a highly conserved C-terminal MATH subdomain (TRAF-C) with an eight-stranded beta-sandwich structure. TRAF-N mediates trimerization while TRAF-C interacts with receptors. Length = 147

>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 23/91 (25%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 33  SGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQ 92
           S   E     W    RL  Y K       LSLYL  ++     +  WS+   + L +  Q
Sbjct: 20  SPSEEHFNIPW----RLKIYRKN----GFLSLYLHCEKEE-CDSRKWSIEAEFTLKLVSQ 70

Query: 93  IRKDYLAVQDAKSGVRTFDQQTSELGFDKFL 123
             K        K     F++ +   GF KF+
Sbjct: 71  NGKSLS-----KKDKHVFEKPSG-WGFSKFI 95

Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	169
cd03772	137	MATH_HAUSP Herpesvirus-associated ubiquitin-specif	99.97
cd03775	134	MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p	99.97
cd03774	139	MATH_SPOP Speckle-type POZ protein (SPOP) family,	99.97
cd03773	132	MATH_TRIM37 Tripartite motif containing protein 37	99.95
cd03780	148	MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A	99.95
cd00270	149	MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-	99.95
cd03776	147	MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A	99.95
cd03777	186	MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A	99.94
cd03779	147	MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A	99.94
cd03781	154	MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A	99.94
cd03771	167	MATH_Meprin Meprin family, MATH domain; Meprins ar	99.93
cd03778	164	MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A	99.92
cd00121	126	MATH MATH (meprin and TRAF-C homology) domain; an	99.92
PF00917	119	MATH: MATH domain; InterPro: IPR002083 Although ap	99.89
cd03782	167	MATH_Meprin_Beta Meprin family, Beta subunit, MATH	99.84
cd03783	167	MATH_Meprin_Alpha Meprin family, Alpha subunit, MA	99.84
smart00061	95	MATH meprin and TRAF homology.	99.82
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	99.72
KOG1987	297	consensus Speckle-type POZ protein SPOP and relate	98.93
KOG1863	1093	consensus Ubiquitin carboxyl-terminal hydrolase [P	98.5
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.28

>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway

Probab=99.97  E-value=8.2e-30  Score=182.91  Aligned_cols=130  Identities=17%  Similarity=0.338  Sum_probs=108.8

Q ss_pred             CCeEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCC----CCCeEEEEEEeccCCCCCCCCeEEEEEE
Q 047807           10 PADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKG----SSDHLSLYLKIDESNSYPNAAWSVNVCY   85 (169)
Q Consensus        10 ~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~----~~~~lSvyL~~~~~~~~~~~~w~~~~~f   85 (169)
                      .++|+|+|+|||.+.    +.++|+.|.+||++|    +|.+||+|..    ..+||||||.|.+... ..+ |++.|+|
T Consensus         2 ~~~~~~~I~~~S~l~----e~~~S~~f~vgG~~W----~i~~~P~g~~~~~~~~~~lsvyL~~~~~~~-~~~-w~i~a~~   71 (137)
T cd03772           2 EATFSFTVERFSRLS----ESVLSPPCFVRNLPW----KIMVMPRNYPDRNPHQKSVGFFLQCNAESD-STS-WSCHAQA   71 (137)
T ss_pred             CcEEEEEECCcccCC----CcEECCCEEECCcce----EEEEEeCCCCCCCCCCCeEEEEEeeCCcCC-CCC-CeEEEEE
Confidence            578999999999983    689999999999999    9999999962    2479999999976432 334 9999999


Q ss_pred             EEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecC
Q 047807           86 RLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP  152 (169)
Q Consensus        86 ~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~  152 (169)
                      +|+|+||+++......   ...+.|......|||++||++++|+++++|||+||+|+|||+|+|-.+
T Consensus        72 ~~~l~~~~~~~~~~~~---~~~~~f~~~~~~~G~~~fi~~~~L~~~~sgyl~~D~l~Ie~~V~~~~~  135 (137)
T cd03772          72 VLRIINYKDDEPSFSR---RISHLFFSKENDWGFSNFMTWSEVTDPEKGFIEDDTITLEVYVQADAP  135 (137)
T ss_pred             EEEEEcCCCCcccEEE---eeeeEEcCCCCCccchheeEHHHhcCCCCCcEECCEEEEEEEEEeeCC
Confidence            9999999864333322   244678776789999999999999877899999999999999988663

It contains an N-terminal TRAF-like domain and a C-terminal catalytic protease (C19 family) domain. The tumor suppressor p53 protein is a transcription factor that responds to many cellular stress signals and is regulated primarily through ubiquitylation and subsequent degradation. MDM2 is a RING-finger E3 ubiquitin ligase that promotes p53 ubiquitinylation. p53 and MDM2 bind to the same site in the N-terminal TRAF-like domain of HAUSP in a mutually exclusive manner. HAUSP also interacts with the Epstein-Barr nuclear antigen 1 (EBNA1) protein of the Epstein-Barr virus (EBV), which efficiently immortalizes infected cells predisposing the host to a variety of cancers. EBNA1

>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast

Probab=99.97  E-value=3.9e-30  Score=184.01  Aligned_cols=125  Identities=21%  Similarity=0.491  Sum_probs=106.0

Q ss_pred             eEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCCCCCeEEEEEEeccCCC----CCCCCeEEEEEEEE
Q 047807           12 DYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNS----YPNAAWSVNVCYRL   87 (169)
Q Consensus        12 ~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~~~----~~~~~w~~~~~f~l   87 (169)
                      +|+|+|.|||.+.    +.++|++|.+|||+|    +|.+||+|+...+|+|+||.+.+.+.    ++.+ |.+.|+|+|
T Consensus         2 ~f~w~I~~fS~~~----~~~~S~~F~vGG~~W----~l~~yP~G~~~~~~iSlyL~l~~~~~~~~~~~~~-~~v~a~f~~   72 (134)
T cd03775           2 SFTWRIKNWSELE----KKVHSPKFKCGGFEW----RILLFPQGNSQTGGVSIYLEPHPEEEEKAPLDED-WSVCAQFAL   72 (134)
T ss_pred             cEEEEECCcccCC----cceeCCCEEECCeeE----EEEEeCCCCCCCCeEEEEEEecCcccccccCCCC-CeEEEEEEE
Confidence            6999999999974    689999999999999    99999999855789999999876432    2445 999999999


Q ss_pred             EEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccC----CCCeEeCCEEEEEEEEE
Q 047807           88 FVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQH----LKGYLLNNTCTFGAEIY  148 (169)
Q Consensus        88 ~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~----~~~fl~~D~l~i~~~V~  148 (169)
                      +|+||.++......   ...+.|+....+|||.+||++++|++|    ++|||+||+|+|++.|+
T Consensus        73 ~l~n~~~~~~~~~~---~~~~~F~~~~~~wG~~~fi~~~~L~~~~~~~~~g~l~nD~l~I~~~~~  134 (134)
T cd03775          73 VISNPGDPSIQLSN---VAHHRFNAEDKDWGFTRFIELRKLAHRTPDKPSPFLENGELNITVYVR  134 (134)
T ss_pred             EEEcCCCCccceEc---cceeEeCCCCCCCChhHcccHHHHcccccCCCCceeECCEEEEEEEEC
Confidence            99999876543332   357899877789999999999999954    57999999999999873

Ubp21p is a deubiquitinating enzyme that may be involved in the regulation of the protein kinase Prp4p, which controls the formation of active spliceosomes. Members of this family are similar to human HAUSP (Herpesvirus-associated ubiquitin-specific protease) in that they contain an N-terminal MATH domain and a C-terminal catalytic protease (C19 family) domain. HAUSP is also an ubiquitin-specific protease that specifically catalyzes the deubiquitylation of p53 and MDM2. The MATH domain of HAUSP contains the binding site for p53 and MDM2. Similarly, the MATH domain of members in this family may be involved in substrate binding.

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP

Probab=99.97  E-value=2.8e-29  Score=180.52  Aligned_cols=133  Identities=25%  Similarity=0.384  Sum_probs=109.0

Q ss_pred             CCCCeEEEEEcCcccccccCCCcEEeCcEEEcC---eEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCCeEEE
Q 047807            8 LPPADYIFKIKSFNLLADSTVDGFESGVFESGG---YYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAAWSVN   82 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG---~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~w~~~   82 (169)
                      ....+|+|+|+|||.+.+..++.+.|++|.+||   ++|    +|++||+|.  +..+|+|+||++.+...     +++.
T Consensus         2 ~~~~~~~w~I~~fS~~~~~~~~~i~S~~F~vgg~~~~~W----~l~~yP~G~~~~~~~~iSlyL~l~~~~~-----~~v~   72 (139)
T cd03774           2 VVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKW----CLRVNPKGLDEESKDYLSLYLLLVSCPK-----SEVR   72 (139)
T ss_pred             ceEEEEEEEECCchhhhhcCCCEEECCCeecCCcCCceE----EEEEeCCCCCCCCCCeEEEEEEEccCCC-----CcEE
Confidence            346789999999999765324789999999998   499    999999997  45689999999975331     6799


Q ss_pred             EEEEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecC
Q 047807           83 VCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP  152 (169)
Q Consensus        83 ~~f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~  152 (169)
                      |+|+|+|+||+++......  ....+.|.. ..+|||.+||++++|.++.+|||+||+|+|+|+|+|+++
T Consensus        73 a~f~~~l~n~~~~~~~~~~--~~~~~~f~~-~~~wG~~~fi~~~~L~~~~~g~l~dD~l~I~c~I~V~~~  139 (139)
T cd03774          73 AKFKFSILNAKGEETKAME--SQRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  139 (139)
T ss_pred             EEEEEEEEecCCCeeeeec--ccCcEeCCC-CCccCHHHeeeHHHhhhhhcccccCCEEEEEEEEEEEcC
Confidence            9999999999987543221  123567764 579999999999999876789999999999999999753

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, conta

>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins

Probab=99.95  E-value=4.6e-27  Score=167.37  Aligned_cols=124  Identities=25%  Similarity=0.414  Sum_probs=101.4

Q ss_pred             CCCeEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCC--CCCeEEEEEEeccCCCCCCCCeEEEEEEE
Q 047807            9 PPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKG--SSDHLSLYLKIDESNSYPNAAWSVNVCYR   86 (169)
Q Consensus         9 ~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~--~~~~lSvyL~~~~~~~~~~~~w~~~~~f~   86 (169)
                      ...+++|+|.|||.+.+. ++.++|+.|.+|||+|    +|.+||+|..  ..+|||+||.+.+..    + |.+.++|+
T Consensus         3 ~~~~~~~~I~~fS~~~~~-~~~~~S~~F~vgG~~W----~i~~yP~G~~~~~~~~lSl~L~l~~~~----~-~~~~~~~~   72 (132)
T cd03773           3 PYDSATFTLENFSTLRQS-ADPVYSDPLNVDGLCW----RLKVYPDGNGEVRGNFLSVFLELCSGL----G-EASKYEYR   72 (132)
T ss_pred             CCcccEEEECChhhhhcC-CcceeCCCeEeCCccE----EEEEECCCCCCCCCCEEEEEEEeecCC----C-CceeEEEE
Confidence            467899999999998642 3789999999999999    9999999983  467999999987542    2 67889999


Q ss_pred             EEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeC--CEEEEEEEEE
Q 047807           87 LFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLN--NTCTFGAEIY  148 (169)
Q Consensus        87 l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~--D~l~i~~~V~  148 (169)
                      |+|+||.++......   ...+.|.. ..+|||.+||++++|+  ++|||+|  |+|+|+|.|+
T Consensus        73 l~llnq~~~~~~~~~---~~~~~f~~-~~~wG~~~Fi~~~~L~--~~gfl~~~~D~l~i~~~v~  130 (132)
T cd03773          73 VEMVHQANPTKNIKR---EFASDFEV-GECWGYNRFFRLDLLI--NEGYLLPENDTLILRFSVR  130 (132)
T ss_pred             EEEEcCCCCccceEE---eccccccC-CCCcCHHHhccHHHHh--hCCCcCCCCCEEEEEEEEe
Confidence            999999644333322   24567765 5789999999999998  5899999  9999999985

Mutations in the human TRIM37 gene (also known as MUL) cause Mulibrey (muscle-liver-brain-eye) nanism, a rare growth disorder of prenatal onset characterized by dysmorphic features, pericardial constriction and hepatomegaly. TRIM37, similar to other TRIMs, contains a cysteine-rich, zinc-binding RING-finger domain followed by another cysteine-rich zinc-binding domain, the B-box, and a coiled-coil domain. TRIM37 is autoubiquitinated in a RING domain-dependent manner, indicating that it functions as an ubiquitin E3 ligase. In addition to the tripartite motif, TRIM37 also contains a MATH domain C-terminal to the coiled-coil domain. The MATH domain of TRIM37 has been shown to interact with the TRAF domain of six known TRAFs i

>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.95  E-value=5e-27  Score=170.22  Aligned_cols=133  Identities=19%  Similarity=0.315  Sum_probs=103.1

Q ss_pred             CeEEEEEcCccccccc-C-CC--cEEeCcE--EEcCeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCCeEEE
Q 047807           11 ADYIFKIKSFNLLADS-T-VD--GFESGVF--ESGGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAAWSVN   82 (169)
Q Consensus        11 ~~~~w~I~nfs~l~~~-~-~~--~~~S~~f--~~gG~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~w~~~   82 (169)
                      |++.|+|+|||.+++. + ++  .++|++|  .++||+|    +|++||+|.  +..+|+||||++++++..+--+|++.
T Consensus         1 g~~vwkI~~ys~~~~~~~~g~~~~i~S~~Fyt~~~Gy~w----~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wp~~   76 (148)
T cd03780           1 GKLIWKVTDYKMKKKEAVDGHTVSIFSQPFYTSRCGYRL----CARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQWPFR   76 (148)
T ss_pred             CEEEEEECCHHHHHHhhcCCCccEEECCCcccCCCCeeE----EEEEEcCCCCCCCCCEEEEEEEEecCccccccCcceE
Confidence            5799999999998653 3 44  7999999  8899999    999999998  34579999999987533111129999


Q ss_pred             EEEEEEEEeCCCCceeeEeec--CCceeeecCC----CCCcCccccccchhhccCCCCeEeCCEEEEEEEE
Q 047807           83 VCYRLFVYDQIRKDYLAVQDA--KSGVRTFDQQ----TSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEI  147 (169)
Q Consensus        83 ~~f~l~l~nq~~~~~~~~~~~--~~~~~~F~~~----~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V  147 (169)
                      ++++|+|+||.+.........  ......|+..    +..||+++||++++|+..+.+||.||+++|+|.|
T Consensus        77 ~~~tfsLlDq~~~~~~~~~~~~~~~~~~~F~rp~~~~n~~~G~~~Fi~~~~Le~s~~~ylkdD~~~Ik~~v  147 (148)
T cd03780          77 QRVTLMLLDQSGKKNHIMETFKADPNSSSFKRPDGEMNIASGCPRFVAHSVLENAKNTYIKDDTLFLKVAV  147 (148)
T ss_pred             EEEEEEEECCCCCCCCcceeeecCCccccccCCCCCCCCCcChhheeEHHHhhcccCCcCcCCEEEEEEEE
Confidence            999999999986543211110  0124668653    5689999999999998434599999999999987

TRAF5 was identified as an activator of nuclear factor-kappaB and a regulator of lymphotoxin-beta receptor and CD40 signaling. Its interaction with CD40 is indirect, involving hetero-oligomerization with TRAF3. In addition, TRAF5 has been shown to associate with other TNFRs including CD27, CD30, OX40 and GITR (glucocorticoid-induced TNFR). It plays a role in modulating Th2 immune responses (driven by OX40 costimulation) and T-cell activation (triggered by GITR). It is also involved in osteoclastogenesis. TRAF5 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more dive

>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems

Probab=99.95  E-value=5.1e-27  Score=170.41  Aligned_cols=131  Identities=22%  Similarity=0.374  Sum_probs=101.6

Q ss_pred             CeEEEEEcCccccccc----CCCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCCeEE
Q 047807           11 ADYIFKIKSFNLLADS----TVDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAAWSV   81 (169)
Q Consensus        11 ~~~~w~I~nfs~l~~~----~~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~w~~   81 (169)
                      ++|+|+|+|||.+++.    .++.++|+.|.+|  ||+|    +|++||+|.  ...+|||+||++.+.... ..+ |++
T Consensus         1 g~~~w~I~~fs~~~~~~~~~~~~~~~S~~F~vg~~G~~w----~i~~yP~G~~~~~~~~lsl~L~l~~~~~d~~~~-w~~   75 (149)
T cd00270           1 GVLIWKIKDYSRKLQEAVAGSNTVLYSPPFYTSRYGYKL----CLRLYLNGDGTGKGTHLSLFVHVMKGEYDALLE-WPF   75 (149)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceE----EEEEEeCCCCCCCCCEEEEEEEEeccCCCcccc-CCc
Confidence            5899999999998652    2478999999999  9999    999999998  245799999999875431 233 999


Q ss_pred             EEEEEEEEEeCCCC--ceeeEee--cCCceeeec-----CCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEE
Q 047807           82 NVCYRLFVYDQIRK--DYLAVQD--AKSGVRTFD-----QQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIY  148 (169)
Q Consensus        82 ~~~f~l~l~nq~~~--~~~~~~~--~~~~~~~F~-----~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~  148 (169)
                      .++|+|+|+||.++  .......  .......|.     ....+|||.+||++++|+  +.|||+||+|+|+|+|.
T Consensus        76 ~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~v~  149 (149)
T cd00270          76 RGKITLTLLDQSDDSKRKHITETFMPDPNSSAFQRPPTGENNIGFGYPEFVPLEKLE--SRGYVKDDTLFIKVEVD  149 (149)
T ss_pred             cceEEEEEECCCCccccCceEEEEEcCCchHhhcCCCcccCCCCcCcceEeEHHHhc--cCCCEeCCEEEEEEEEC
Confidence            99999999999874  1111110  001123454     145789999999999998  46899999999999983

There are at least six mammalian and three Drosophila proteins containing TRAF domains. The mammalian TRAFs display varying expression profiles, indicating independent and cell type-specific regulation. They display distinct, as well as overlapping functions and interactions with receptors. Most TRAFs, except TRAF1, share N-terminal homology and contain a RING domain, multiple zinc finger domains, and a TRAF domain. TRAFs form homo- and heterotrimers through its TRAF domain. The TRAF domain can be divided into a more divergent N-ter

>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2

Probab=99.95  E-value=3.4e-27  Score=171.22  Aligned_cols=131  Identities=19%  Similarity=0.280  Sum_probs=101.1

Q ss_pred             CeEEEEEcCcccccc-cC-CC--cEEeCcEEE--cCeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCC-CCCCCeEE
Q 047807           11 ADYIFKIKSFNLLAD-ST-VD--GFESGVFES--GGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNS-YPNAAWSV   81 (169)
Q Consensus        11 ~~~~w~I~nfs~l~~-~~-~~--~~~S~~f~~--gG~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~-~~~~~w~~   81 (169)
                      |+|.|+|.|||.+++ .+ ++  .++|+.|.+  |||+|    +|++||+|.  +..+|||+||++++... ...+ |++
T Consensus         1 g~h~~~I~~yS~~~~~~~~g~~~~i~S~~F~~~~gGy~W----~i~~yP~G~~~~~~~~lS~~L~l~~~~~d~~l~-wpv   75 (147)
T cd03776           1 GIYVWKIKNFSNLRRSMEAGSPVVIHSPGFYTSPPGYKL----CARLNLSLPEARCPNYISLFVHLMQGENDSHLD-WPF   75 (147)
T ss_pred             CEEEEEECCHHHHHHHHhcCCCceEECCCcccCCCCceE----EEEEEeCCCCCCCCCEEEEEEEEeccCCCcccC-Ccc
Confidence            589999999998654 22 34  488999985  79999    999999998  34579999999987543 1223 999


Q ss_pred             EEEEEEEEEeCCCCceeeEe--ecCCceeeecC-----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEE
Q 047807           82 NVCYRLFVYDQIRKDYLAVQ--DAKSGVRTFDQ-----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIY  148 (169)
Q Consensus        82 ~~~f~l~l~nq~~~~~~~~~--~~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~  148 (169)
                      .++|+|+|+||.++......  ........|..     .+.+|||.+||++++|+  +.+||+||+|+|+|+|.
T Consensus        76 ~a~~~~~lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~I~c~V~  147 (147)
T cd03776          76 QGTITLTLLDQSEPRQNIHETMMSKPELLAFQRPTTDRNPKGFGYVEFAHIEDLL--QRGFVKNDTLLIKIEVN  147 (147)
T ss_pred             cceeEEEEECCCcccCccEEEEEcCCChHhhcCCCcCCCCCCeeEceeeEHHHhh--hCCCccCCEEEEEEEEC
Confidence            99999999999875432211  00112356763     34689999999999998  57899999999999984

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF6 is the most divergent in its TRAF domain among the mammalian TRAFs. In addition to mediating TNFR family signaling, it is also an essential signaling molecule of the interleukin-1/Toll-like receptor superfamily. Whereas other TRAF molecules display similar and overlapping TNFR-binding specificities, TRAF6 binds completely different sites on receptors such as CD40 and RANK. TRAF6 serves as a molecular bridge between innate and adaptive immunity and plays a central role in osteoimmunology. DTRAF2, as an activator of nuclear factor-kapp

>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.94  E-value=4.5e-26  Score=170.78  Aligned_cols=134  Identities=19%  Similarity=0.251  Sum_probs=103.8

Q ss_pred             CCCeEEEEEcCcccccc-cC-CC--cEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCCeE
Q 047807            9 PPADYIFKIKSFNLLAD-ST-VD--GFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAAWS   80 (169)
Q Consensus         9 ~~~~~~w~I~nfs~l~~-~~-~~--~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~w~   80 (169)
                      ..|+|.|+|.|||..++ .+ ++  .++||+|.+|  ||+|    +|.+||+|.  +..+|+|+||+++++...+.-+|+
T Consensus        37 ~~G~hvwkI~~yS~~~~~~~~g~~~~i~S~~Fyvg~~GY~w----~i~~ypnG~g~~~~~~iSvyl~L~~ge~D~~L~WP  112 (186)
T cd03777          37 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM----CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLPWP  112 (186)
T ss_pred             cceEEEEEECChhHHHHhhccCCCcEEECCCeEeCCCCeeE----EEEEEcCCCCCCCCCEEEEEEEEecCCcccccCCc
Confidence            46999999999999864 33 34  7999999999  9999    999999998  345799999999876421111299


Q ss_pred             EEEEEEEEEEeCCCCceeeEeec--CCceeeec-CC---CCCcCccccccchhhccCCCCeEeCCEEEEEEEEE
Q 047807           81 VNVCYRLFVYDQIRKDYLAVQDA--KSGVRTFD-QQ---TSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIY  148 (169)
Q Consensus        81 ~~~~f~l~l~nq~~~~~~~~~~~--~~~~~~F~-~~---~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~  148 (169)
                      +.++|+|+|+||.+.........  ......|. ..   +.+||+++||++++|+  +.+||+||+++|+|.|.
T Consensus       113 ~~~~~tfsLlDQ~~~~~~~~~~~~p~p~~~~F~rp~~~~n~~~G~~~Fi~~~~Le--~~~ylkdD~l~Irv~v~  184 (186)
T cd03777         113 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVD  184 (186)
T ss_pred             eeEEEEEEEEcCCCccccccceeccCCccccccCCccCCCCCCCchheeEHHHhc--cCCcEeCCEEEEEEEEe
Confidence            99999999999975322111100  01235576 22   5689999999999998  68999999999999986

TRAF3 was first described as a molecule that binds the cytoplasmic tail of CD40. However, it is not required for CD40 signaling. More recently, TRAF3 has been identified as a key regulator of type I interferon (IFN) production and the mammalian innate antiviral immunity. It mediates IFN responses in Toll-like receptor (TLR)-dependent as well as TLR-independent viral recognition pathways. It is also a key element in immunological homeostasis through its regulation of the anti-inflammatory cytokine interleukin-10. TRAF3 contains a RING finger domain, five zinc finger domains, and a TRAF domain. The TRAF domain can be divided into a more divergent N-terminal al

>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.94  E-value=3.3e-26  Score=165.46  Aligned_cols=133  Identities=18%  Similarity=0.295  Sum_probs=101.1

Q ss_pred             CeEEEEEcCccccccc-C---CCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCCeEEE
Q 047807           11 ADYIFKIKSFNLLADS-T---VDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAAWSVN   82 (169)
Q Consensus        11 ~~~~w~I~nfs~l~~~-~---~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~w~~~   82 (169)
                      |++.|+|+||+++.+. .   ...++||.|..+  ||+|    +|.+||+|.  +..+|+|+||+++++...+.-+|++.
T Consensus         1 g~~~W~i~~f~~~~~~a~~~~~~~~~S~~Fyt~~~Gy~w----~i~~ypnG~~~~~~~~iSv~l~l~~g~~D~~l~wpv~   76 (147)
T cd03779           1 GTFLWKITDVSQKQRESSHGRDVSLCSPAFYTAKYGYKV----CLRLYLNGDGAGKGTHISLFFVIMKGEYDALLPWPFR   76 (147)
T ss_pred             CeEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCceE----EEEEEcCCCCCCCCCEEEEEEEEecCCcccccCcceE
Confidence            6799999999975543 1   247999999875  9999    999999998  34679999999987542111129999


Q ss_pred             EEEEEEEEeCCCCceeeEeecCCc--eeeec----CCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEE
Q 047807           83 VCYRLFVYDQIRKDYLAVQDAKSG--VRTFD----QQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIY  148 (169)
Q Consensus        83 ~~f~l~l~nq~~~~~~~~~~~~~~--~~~F~----~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~  148 (169)
                      ++|+|+|+||.+........ ...  .+.|+    ..+.+||+++||++++|+....+||.||+++|+|+|.
T Consensus        77 ~~~tfsLlDq~~~~~~~~~~-~~~~~~~~F~rP~~~~n~~~G~~~Fi~~~~Le~s~~~ylkDD~~~Irc~V~  147 (147)
T cd03779          77 HKVTFMLLDQNNREHVIDAF-RPDLSSASFQRPVSDMNVASGCPLFFPLKKLQSPKHAYCKDDTIYIKCVVD  147 (147)
T ss_pred             EEEEEEEECCCCCCCCcEee-cCCcccccccCcccCCCCCcchhheeEHHHhcccCCCcEeCCEEEEEEEEC
Confidence            99999999998754422110 011  35686    3456899999999999983224999999999999983

TRAF1 expression is the most restricted among the TRAFs. It is found exclusively in activated lymphocytes, dendritic cells and certain epithelia. TRAF1 associates, directly or indirectly through heterodimerization with TRAF2, with the TNFR family receptors TNFR-2, CD30, RANK, CD40 and LMP1, among others. It also binds the intracellular proteins TRADD, TANK, TRIP, RIP1, RIP2 and FLIP. TRAF1 is unique among the TRAFs in that it lacks a RING domain, which is critical for the activation of nuclear factor-kappaB and Jun NH2-terminal kinase. Studies on TRAF1-deficient mice suggest that TRAF1 has a negative regulatory role in TNFR-mediat

>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1

Probab=99.94  E-value=4.4e-26  Score=166.65  Aligned_cols=131  Identities=18%  Similarity=0.334  Sum_probs=101.7

Q ss_pred             CeEEEEEcCccccccc--C--CCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCC-CCCeEE
Q 047807           11 ADYIFKIKSFNLLADS--T--VDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYP-NAAWSV   81 (169)
Q Consensus        11 ~~~~w~I~nfs~l~~~--~--~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~-~~~w~~   81 (169)
                      |+|.|+|+|||.+++.  +  ++.+.|+.|.+|  ||+|    +|++||+|.  +..+|+|+||++++.+..+ .. |++
T Consensus         1 g~~~~~I~gys~~~~~~~~~~~~~i~S~~F~vg~~Gy~w----~i~~yPnG~~~~~~~~vs~~l~l~~ge~d~~l~-wp~   75 (154)
T cd03781           1 GTLLWKITDYSRKLQEAKGRDNLELFSPPFYTHRYGYKL----QVSAFLNGNGSGEGSHLSVYIRVLPGEYDNLLE-WPF   75 (154)
T ss_pred             CEEEEEECCHHHHHHHhhcCCCceEECCCeecCCCCEEE----EEEEECCCCCCCCCCEEEEEEEEecCCcccccC-Cce
Confidence            6899999999998753  2  478999999999  9999    999999998  3457999999998754321 23 999


Q ss_pred             EEEEEEEEEeCCCCc--e--eeEee--cCCceeeecC--------CCCCcCccccccchhhccCCCCeEeCCEEEEEEEE
Q 047807           82 NVCYRLFVYDQIRKD--Y--LAVQD--AKSGVRTFDQ--------QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEI  147 (169)
Q Consensus        82 ~~~f~l~l~nq~~~~--~--~~~~~--~~~~~~~F~~--------~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V  147 (169)
                      .++|+|+|+||.+..  .  .....  .......|+.        .+.+|||.+||++++|+  +.+||+||+|+|+|+|
T Consensus        76 ~a~~~~~llDq~~~~~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~~~~~~G~~~fi~~~~Le--~~~yl~dD~l~Irc~v  153 (154)
T cd03781          76 SHRITFTLLDQSDPSLSKPQHITETFTPDPTWKNFQKPSASRLDESTLGFGYPKFISHEDLK--KRNYIKDDAIFLRASV  153 (154)
T ss_pred             eeEEEEEEECCCCCccccCcceEEEEEcCCchhhhcCCcccccCCCCCccchhHeeEHHHHh--hCCcccCCEEEEEEEe
Confidence            999999999998751  1  11000  0012345552        35679999999999999  6899999999999988


Q ss_pred             E
Q 047807          148 Y  148 (169)
Q Consensus       148 ~  148 (169)
                      .
T Consensus       154 ~  154 (154)
T cd03781         154 E  154 (154)
T ss_pred             C
Confidence            3

TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses. TRAF4 is highly expressed during embryogenesis, especially in the central and peripheral nervous system. Studies using TRAF4-deficient mice show that TRAF4 is required for neurogenesis, as well as the development of the trachea and the axial skeleton. In addition, TRAF4 augments nuclear factor-kappaB activation triggered by GITR (glucocorticoid-induced TNFR), a receptor expressed in T-cells, B-cells and macrophages. It also participates in counteracting the signaling mediated by Toll-like receptors through its association with TRAF6 and TR

>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces

Probab=99.93  E-value=4e-25  Score=162.66  Aligned_cols=133  Identities=17%  Similarity=0.327  Sum_probs=98.6

Q ss_pred             CCeEEEEEcCccccc-ccC-CCcEEeCcE-EEcCeEeeeceEEEEeeCCC-CCCCeEEEEEEeccCCCCCCCCeE-EEEE
Q 047807           10 PADYIFKIKSFNLLA-DST-VDGFESGVF-ESGGYYWCVCTRLVFYPKGK-GSSDHLSLYLKIDESNSYPNAAWS-VNVC   84 (169)
Q Consensus        10 ~~~~~w~I~nfs~l~-~~~-~~~~~S~~f-~~gG~~W~~~~~l~~yP~g~-~~~~~lSvyL~~~~~~~~~~~~w~-~~~~   84 (169)
                      +.+|.|+|.|||.++ +.+ ++.++||+| .+|||+|    +|++||+|. ...+|+||||++++++..+..+|+ +.++
T Consensus         1 cp~hvwkI~~yS~~~~~~~~g~~i~S~~FysvgGy~w----~I~~YPnG~~~~~~~lSlyL~L~~g~~d~~L~WP~v~a~   76 (167)
T cd03771           1 CPEAVWRVRNFSQLLETTPKGTKIYSPRFYSPEGYAF----QVGLYPNGTESYPGYTGLYFHLCSGENDDVLEWPCPNRQ   76 (167)
T ss_pred             CCeEEEEEcCchhhhhcCCCCCEEECCCCCccCCeEE----EEEEEeCCCCCCCCcceEEEEEecCCccccccCcceeEE
Confidence            468999999999986 433 578999998 8999999    999999998 345699999999875442212299 5899


Q ss_pred             EEEEEEeCCCC---ceeeEe----ec--CC---ceeeec----------C-------CCCCcCccccccchhhccCCCCe
Q 047807           85 YRLFVYDQIRK---DYLAVQ----DA--KS---GVRTFD----------Q-------QTSELGFDKFLTLAELNQHLKGY  135 (169)
Q Consensus        85 f~l~l~nq~~~---~~~~~~----~~--~~---~~~~F~----------~-------~~~~~G~~~fi~~~~L~~~~~~f  135 (169)
                      ++|+|+||...   ..+...    +.  .+   ....|+          .       .+.+|||++||++++|+  +.+|
T Consensus        77 ~t~~LlDQ~~~~~~r~~~~~~~~~dp~~~~~~~~~~~~~rP~~~~~~~~~~~~~~~~~~~g~G~~~Fis~~~L~--~r~y  154 (167)
T cd03771          77 ATMTLLDQDPDIQQRMSNQRSFTTDPSMTSSDNGEYFWDRPSKVGSYDTDTNGCTCYRGPGYGWSTFISHSRLR--RRDF  154 (167)
T ss_pred             EEEEEECCCCcccccCcceEEEecCCcccccccccccccCCccccccccccccccccccCccccccceeHHHhc--cCCC
Confidence            99999999731   111111    00  00   011122          1       34589999999999999  5779


Q ss_pred             EeCCEEEEEEEEE
Q 047807          136 LLNNTCTFGAEIY  148 (169)
Q Consensus       136 l~~D~l~i~~~V~  148 (169)
                      |+||+|.|+++++
T Consensus       155 lk~dtl~i~~~~~  167 (167)
T cd03771         155 LKGDDLIILLDFE  167 (167)
T ss_pred             CcCCEEEEEEEeC
Confidence            9999999999873

They are expressed in renal and intestinal brush border membranes, leukocytes, and cancer cells, and are capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides. Meprin proteases are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. Despite their similarity, the two subunits differ in their ability to self-associate, in proteolytic processing during biosynthesis and in substrate specificity. Both subunits are synthesized as membrane spanning proteins, however, the alpha subunit is cleaved during biosynthesis and loses its transmembrane domain. Meprin beta forms homodimers or heterotetramers while meprin alpha oligomerizes into large complexes co

>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses

Probab=99.92  E-value=9.5e-25  Score=159.76  Aligned_cols=133  Identities=20%  Similarity=0.299  Sum_probs=102.5

Q ss_pred             CCCeEEEEEcCcccccccC----CCcEEeCcEEE--cCeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCC-CCCe
Q 047807            9 PPADYIFKIKSFNLLADST----VDGFESGVFES--GGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYP-NAAW   79 (169)
Q Consensus         9 ~~~~~~w~I~nfs~l~~~~----~~~~~S~~f~~--gG~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~-~~~w   79 (169)
                      ..|+|.|+|+||+++.+..    ...++||.|..  +||+|    +|++||+|+  ..+.|||+|+++++++..+ .+ |
T Consensus        17 ~~g~fiWkI~~fs~~~~~a~~~~~~~i~Sp~Fyt~~~GYk~----~l~~ylnG~g~~~g~~LSly~~l~~Ge~D~~L~-W   91 (164)
T cd03778          17 YDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM----CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLR-W   91 (164)
T ss_pred             cCCEEEEEECcHHHHHHHHhcCCCceEECCCcccCCCCeEE----EEEEEeCCCCCCCCCEEEEEEEEecCCcCcccC-C
Confidence            3799999999999976531    24799999986  49999    999999998  3456999999999886633 33 9


Q ss_pred             EEEEEEEEEEEeCCCCceeeEee-cCCceeeec----CCCCCcCccccccchhhccCCCCeEeCCEEEEEEEE
Q 047807           80 SVNVCYRLFVYDQIRKDYLAVQD-AKSGVRTFD----QQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEI  147 (169)
Q Consensus        80 ~~~~~f~l~l~nq~~~~~~~~~~-~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V  147 (169)
                      ++..+++|+|+||++..+....- .......|.    ..+.+|||+.|+++++|.. ..+||+||+|.|+|.|
T Consensus        92 Pf~~~itl~llDQ~~r~hi~~~~~pd~~~~~f~RP~~~~n~~~G~~~Fv~l~~l~~-~~~Yv~dDtlfIk~~V  163 (164)
T cd03778          92 PFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKXEA-KNSYVRDDAIFIKAIV  163 (164)
T ss_pred             ceeeEEEEEEECCCCCCcceeEEEcCcchHhcCCCCcccccCcCcceEEEhhHccc-cCCcccCCeEEEEEEE
Confidence            99999999999998644322100 001112352    2466899999999999984 2699999999999987

TRAF2 associates with the receptors TNFR-1, TNFR-2, RANK (which mediates differentiation and maturation of osteoclasts) and CD40 (which is important for the proliferation and activation of B cells), among others. It regulates distinct pathways that lead to the activation of nuclear factor-kappaB and Jun NH2-terminal kinases. TRAF2 also indirectly associates with death receptors through its interaction with TRADD (TNFR-associated death domain protein). It is involved in regulating oxidative stress or ROS-induced cell death and in the preconditioning of cells by sublethal stress for protection from subsequent injury. TRAF2 contains a RING finger domain, five z

>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins

Probab=99.92  E-value=8.5e-24  Score=147.29  Aligned_cols=124  Identities=34%  Similarity=0.556  Sum_probs=98.8

Q ss_pred             CeEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCC-CCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEE
Q 047807           11 ADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK-GSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFV   89 (169)
Q Consensus        11 ~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~-~~~~~lSvyL~~~~~~~~~~~~w~~~~~f~l~l   89 (169)
                      ++|+|+|.+|+...   ++.++|+.|.++|+.|    +|.+||+|. ...+|||+||.|.+....... |++.++|+|+|
T Consensus         1 ~~~~~~i~~~~~~~---~~~~~S~~f~~~g~~W----~l~~~p~~~~~~~~~lsv~L~~~~~~~~~~~-~~~~~~~~~~l   72 (126)
T cd00121           1 GKHTWKIVNFSELE---GESIYSPPFEVGGYKW----RIRIYPNGDGESGDYLSLYLELDKGESDLEK-WSVRAEFTLKL   72 (126)
T ss_pred             CEEEEEECCCCCCC---CcEEECCCEEEcCEeE----EEEEEcCCCCCCCCEEEEEEEecCCCCCCCC-CcEEEEEEEEE
Confidence            47999999999932   2789999999999999    999999997 335699999999876543233 99999999999


Q ss_pred             EeCCCCceeeEeecCCceeeec-CCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEE
Q 047807           90 YDQIRKDYLAVQDAKSGVRTFD-QQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIY  148 (169)
Q Consensus        90 ~nq~~~~~~~~~~~~~~~~~F~-~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~  148 (169)
                      +||++.+....    .....|. ....+|||.+||++++|.+  ..++.||+|+|+|+|.
T Consensus        73 ~~~~~~~~~~~----~~~~~~~~~~~~~~G~~~fi~~~~l~~--~~~~~~d~l~i~~~v~  126 (126)
T cd00121          73 VNQNGGKSLSK----SFTHVFFSEKGSGWGFPKFISWDDLED--SYYLVDDSLTIEVEVK  126 (126)
T ss_pred             ECCCCCccceE----eccCCcCCCCCCCCChHHeeEHHHhcc--CCcEECCEEEEEEEEC
Confidence            99984433221    1334443 4578999999999999994  4449999999999984

Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane and are capable of cleaving growth factors, extracellular matrix proteins, and biologically active peptides. TRAF molecules serve as adapter proteins that link cell surface receptors of the Tumor Necrosis Factor and 1nterleukin-1/Toll-like families to downstream kinase cascades, which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems. Other members include the ubiquitin ligases, TRIM37 and SPOP, and the ubiquitin-specific proteases, HAUSP and Ubp21p. A large number of uncharacterized members mostly from lineage-specific expansions in C. elegans and rice contain MATH and BTB domains, similar to SPOP. The MATH doma

>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain []

Probab=99.89  E-value=5.2e-23  Score=142.92  Aligned_cols=118  Identities=30%  Similarity=0.556  Sum_probs=95.5

Q ss_pred             EcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCCCCCeEEEEEEeccCCCCC-CCCeEEEEEEEEEEEeCCCC
Q 047807           17 IKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYP-NAAWSVNVCYRLFVYDQIRK   95 (169)
Q Consensus        17 I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~~~~~-~~~w~~~~~f~l~l~nq~~~   95 (169)
                      |+|||++... ...+.|+.|.++|++|    +|.+||+|+  .+++++||+|....... .+ |++.++++++++++.++
T Consensus         1 i~nfs~l~~~-~~~~~s~~~~~~g~~W----~l~~~~~~~--~~~l~~~L~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~   72 (119)
T PF00917_consen    1 IKNFSKLKEG-EEYSSSFVFSHGGYPW----RLKVYPKGN--GKYLSVYLHCDKGENDSDLE-WSIEAEFRFRLLNQNGK   72 (119)
T ss_dssp             ETTGGGHHTS-EEEEEEEESSTTSEEE----EEEEETTES--TTEEEEEEEEECSTTGGGSS-SSEEEEEEEEEE-TTSC
T ss_pred             CcccceEeCC-CcEECCCeEEECCEEE----EEEEEeCCC--cCcEEEEEEEeecccccccc-eeeeEEEEEEEecCCCC
Confidence            7899999832 1345558999999999    999999985  57999999999875432 34 99999999999999988


Q ss_pred             ceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEE
Q 047807           96 DYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYV  149 (169)
Q Consensus        96 ~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v  149 (169)
                      ......    ..+.|+. ..+|||.+||++++|.+  ..|+.||+|+|+|+|+|
T Consensus        73 ~~~~~~----~~~~F~~-~~~~g~~~fi~~~~l~~--~~fl~dd~l~ie~~v~I  119 (119)
T PF00917_consen   73 SISKRI----KSHSFNN-PSSWGWSSFISWEDLED--PYFLVDDSLTIEVEVKI  119 (119)
T ss_dssp             EEEEEE----ECEEECT-TSEEEEEEEEEHHHHTT--CTTSBTTEEEEEEEEEE
T ss_pred             cceeee----eeeEEee-ecccchhheeEHHHhCc--cCCeECCEEEEEEEEEC
Confidence            743321    2478875 58999999999999994  33899999999999986

Meprins are mammalian tissue-specific metalloendopeptidases of the astacin family implicated in developmental, normal and pathological processes by hydrolysing a variety of proteins. Various growth factors, cytokines, and extracellular matrix proteins are substrates for meprins. They are composed of five structural domains: an N-terminal endopeptidase domain, a MAM domain (see PDOC00604 from PROSITEDOC), a MATH domain, an EGF-like domain (see PDOC00021 from PROSITEDOC) and a C-terminal transmembrane region. Meprin A and B form membrane bound homotetramer whereas homooligomers of meprin A are secreted. A proteolitic site adjacent to the MATH domain, only present in meprin A, allows the release of the protein from the membrane []. TRAF proteins were first isolated by their ability to interact with TNF receptors []. They promote cell survival by the activation of downstream protein kinases and, finally, transcription factors of the NF-kB and AP-1 family. The TRAF proteins are composed of 3 structural domains: a RING finger (see PDOC00449 from PROSITEDOC) in the N-terminal part of the protein, one to seven TRAF zinc fingers (see PDOC50145 from PROSITEDOC) in the middle and the MATH domain in the C-terminal part []. The MATH domain is necessary and sufficient for self-association and receptor interaction. From the structural analysis two consensus sequence recognised by the TRAF domain have been defined: a major one, [PSAT]x[QE]E and a minor one, PxQxxD []. The structure of the TRAF2 protein reveals a trimeric self-association of the MATH domain []. The domain forms a new, light-stranded antiparallel beta sandwich structure. A coiled-coil region adjacent to the MATH domain is also important for the trimerisation. The oligomerisation is essential for establishing appropriate connections to form signalling complexes with TNF receptor-1. The ligand binding surface of TRAF proteins is located in beta-strands 6 and 7 [].; GO: 0005515 protein binding; PDB: 1D00_E 1CZY_A 1D01_F 1CA9_A 1D0J_D 1F3V_B 1CA4_C 1D0A_A 1QSC_C 1CZZ_C ....

>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.84  E-value=2.4e-20  Score=135.69  Aligned_cols=132  Identities=18%  Similarity=0.334  Sum_probs=99.5

Q ss_pred             CCeEEEEEcCccccccc-C-CCcEEeCcEEE-cCeEeeeceEEEEeeCCC-CCCCeEEEEEEeccCCCCCCCCeEEE-EE
Q 047807           10 PADYIFKIKSFNLLADS-T-VDGFESGVFES-GGYYWCVCTRLVFYPKGK-GSSDHLSLYLKIDESNSYPNAAWSVN-VC   84 (169)
Q Consensus        10 ~~~~~w~I~nfs~l~~~-~-~~~~~S~~f~~-gG~~W~~~~~l~~yP~g~-~~~~~lSvyL~~~~~~~~~~~~w~~~-~~   84 (169)
                      +..+.|+|+||+++.+. + +..++||+|.. .||+.    ++.+||+|. ...+|||||+++++++..+.-+|++. -+
T Consensus         1 cp~~iWkI~~fs~~~~~~~~~~~i~Sp~FYt~~GYkl----~l~~ylnG~g~~~~~lsl~~~lm~Ge~D~~L~WPf~~~q   76 (167)
T cd03782           1 CPEHIWHIRNFTQLLATTPPNGKIYSPPFLSSTGYSF----QVGLYLNGTDDYPGNLAIYLHLTSGPNDDQLQWPCPWQQ   76 (167)
T ss_pred             CCcEEEEeCcHHHHHHhcCCCceEECCCCcCccCcee----EEEEEecCCCCCCCEEEEEEEEeccCCCccccCCCcCCe
Confidence            45799999999997654 2 57899999975 69999    999999998 34579999999998765221129999 89


Q ss_pred             EEEEEEeCCC---CceeeEe--ecC----Cc-eeee--cC-----------------CCCCcCccccccchhhccCCCCe
Q 047807           85 YRLFVYDQIR---KDYLAVQ--DAK----SG-VRTF--DQ-----------------QTSELGFDKFLTLAELNQHLKGY  135 (169)
Q Consensus        85 f~l~l~nq~~---~~~~~~~--~~~----~~-~~~F--~~-----------------~~~~~G~~~fi~~~~L~~~~~~f  135 (169)
                      ++|+|+||+.   .+.+...  +.+    +. ...|  .+                 ++.++||+.||++++|+  ++.|
T Consensus        77 it~~LlDQ~~d~~~r~~~~~~~t~~P~~~s~~n~~f~w~rP~kvg~~~~~~~~~~~~r~~~~G~~~Fish~~L~--~r~y  154 (167)
T cd03782          77 ATMMLLDQHPDIRQRMSNQRSVTTDPNMTSTDSDEYFWDDPRKVGSEVTDTDGSTFYRGPGYGTSAFITHLRLR--SRDF  154 (167)
T ss_pred             EEEEEEcCCCchhhccceeeeEEecCCcccccCccceecCCcccCcccccccccccccccccCccceeeHHHHh--hcCc
Confidence            9999999974   2222211  000    01 1134  21                 15789999999999999  6999


Q ss_pred             EeCCEEEEEEEE
Q 047807          136 LLNNTCTFGAEI  147 (169)
Q Consensus       136 l~~D~l~i~~~V  147 (169)
                      |+||++.|-+++
T Consensus       155 ikdD~ifi~~~~  166 (167)
T cd03782         155 IKGDDVIFLLTM  166 (167)
T ss_pred             ccCCeEEEEEec
Confidence            999999998876

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The beta subunit is a type I membrane protein, which forms homodimers or heterotetramers (alpha2beta2 or alpha3beta). Meprin beta shows preference for acidic residues at the P1 and P1' sites of its substrate. Among its best substrates are growth factors and chemokines such as gastrin and osteopontin. Both alpha and beta subunits contain a catalytic astacin (M12 family) protease domain followed by the adhesion or interaction domains MAM, MATH and AM. The MATH and MAM domains provide symmetrical intersubunit disulfide bonds necessary for the dimerization of meprin subunits. The MATH domain may also be required for f

>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides

Probab=99.84  E-value=2.7e-20  Score=136.00  Aligned_cols=132  Identities=18%  Similarity=0.357  Sum_probs=97.8

Q ss_pred             CCeEEEEEcCccccccc--CCCcEEeCcEEEc-CeEeeeceEEEEeeCCCC---CCCeEEEEEEeccCCCCCCCCeEE-E
Q 047807           10 PADYIFKIKSFNLLADS--TVDGFESGVFESG-GYYWCVCTRLVFYPKGKG---SSDHLSLYLKIDESNSYPNAAWSV-N   82 (169)
Q Consensus        10 ~~~~~w~I~nfs~l~~~--~~~~~~S~~f~~g-G~~W~~~~~l~~yP~g~~---~~~~lSvyL~~~~~~~~~~~~w~~-~   82 (169)
                      +..+.|+|+||+++.+.  ....++||.|... ||+.    +|++||+|++   .+.|+|||+++++++....-+|++ .
T Consensus         1 cp~~iWkI~nfs~~~~~a~~~~~i~Sp~Fyt~~GYk~----~l~~~lng~~~~~~g~~lSl~~~lm~Ge~D~~L~WP~~~   76 (167)
T cd03783           1 CPNAVWRVRNFSQILENTTKGDVLQSPRFYSPEGYGY----GVSLYPLSNESDYSGNYTGLYFHLCSGENDAVLEWPALN   76 (167)
T ss_pred             CCceeEEECcHHHHHHhCcCCCeEECCCCccCCCceE----EEEEEecCCCCCCCCCEEEEEEEEecccCCCcccCCCcC
Confidence            35789999999997654  2468999999874 9999    9999999983   356999999999876521112995 6


Q ss_pred             EEEEEEEEeCCCC---ceeeEe----ecCCc------eeeecC--------------CCCCcCccccccchhhccCCCCe
Q 047807           83 VCYRLFVYDQIRK---DYLAVQ----DAKSG------VRTFDQ--------------QTSELGFDKFLTLAELNQHLKGY  135 (169)
Q Consensus        83 ~~f~l~l~nq~~~---~~~~~~----~~~~~------~~~F~~--------------~~~~~G~~~fi~~~~L~~~~~~f  135 (169)
                      -+++|+|+||+..   ..+...    +....      ...|++              .+.++||+.||++++|+  +++|
T Consensus        77 ~~itl~llDQ~~~~~~r~~~~~sf~~d~~~~~~~~~~~~~f~rP~~~~~~~~~~~~~~~~gfG~~~Fish~~L~--~r~y  154 (167)
T cd03783          77 RQAIITVLDQDPDVRLRMSSSRSFTTDKSQTSSAINGTLRWDRPSRVGTYDTSCDCFRGIDFGWSTFISHSQLR--RRSF  154 (167)
T ss_pred             CEEEEEEEcCCcchhhccccceeeecCCCcccccccccccccCCcccccccccccccCCcccccccceeHHHHh--hCCc
Confidence            7999999999741   111110    00001      111332              35689999999999999  6999


Q ss_pred             EeCCEEEEEEEE
Q 047807          136 LLNNTCTFGAEI  147 (169)
Q Consensus       136 l~~D~l~i~~~V  147 (169)
                      |+||+|.|.+++
T Consensus       155 ikdDtlfI~~~~  166 (167)
T cd03783         155 LKNDDLIIFVDF  166 (167)
T ss_pred             ccCCeEEEEEec
Confidence            999999999886

They are composed of two related subunits, alpha and beta, which form homo- or hetro-complexes where the basic unit is a disulfide-linked dimer. The alpha subunit is synthesized as a membrane spanning protein, however, it is cleaved during biosynthesis and loses its transmembrane domain. It oligomerizes into large complexes, containing 10-100 subunits (dimers that associate noncovalently), which are secreted as latent proteases and can move through extracellular spaces in a nondestructive manner. This allows delivery of the concentrated protease to sites containing activating enzymes, such as sites of inflammation, infection or cancerous growth. Meprin alpha shows preference for small or hydrophobic residues at the P1 and P1' sites of its substrate. Both

>smart00061 MATH meprin and TRAF homology

Probab=99.82  E-value=2.5e-19  Score=119.47  Aligned_cols=94  Identities=27%  Similarity=0.439  Sum_probs=78.6

Q ss_pred             EEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEEEeC
Q 047807           13 YIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQ   92 (169)
Q Consensus        13 ~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~~~~~~~~w~~~~~f~l~l~nq   92 (169)
                      ++|.|.||+.+...  +.++|+.|.+||+.|    +|.+||++    +|||+||.|.+....+.+ |++.|+|+|+|+||
T Consensus         2 ~~~~~~~~~~~~~~--~~~~S~~f~~~g~~W----~i~~~p~~----~~lsl~L~~~~~~~~~~~-w~v~a~~~~~l~~~   70 (95)
T smart00061        2 LSHTFKNVSRLEEG--ESYFSPSEEHFNIPW----RLKIYRKN----GFLSLYLHCEKEECDSRK-WSIEAEFTLKLVSQ   70 (95)
T ss_pred             ceeEEEchhhcccC--ceEeCChhEEcCcee----EEEEEEcC----CEEEEEEEeCCCcCCCCC-eEEEEEEEEEEEeC
Confidence            57999999998543  789999999999999    99999994    899999999876543334 99999999999999


Q ss_pred             CCCceeeEeecCCceeeecCCCCCcCccccc
Q 047807           93 IRKDYLAVQDAKSGVRTFDQQTSELGFDKFL  123 (169)
Q Consensus        93 ~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi  123 (169)
                      +++....     ...+.|.. ..+|||.+||
T Consensus        71 ~~~~~~~-----~~~~~F~~-~~~~G~~~fi   95 (95)
T smart00061       71 NGKSLSK-----KDKHVFEK-PSGWGFSKFI   95 (95)
T ss_pred             CCCEEee-----eeeEEEcC-CCccceeeEC
Confidence            9875522     35788986 7899999986

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=9.5e-18  Score=144.13  Aligned_cols=137  Identities=20%  Similarity=0.414  Sum_probs=112.7

Q ss_pred             CCcCCCCeEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCCCCCeEEEEEEeccCCC-CCCC-CeEEE
Q 047807            5 KRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNS-YPNA-AWSVN   82 (169)
Q Consensus         5 ~~~~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~~~-~~~~-~w~~~   82 (169)
                      +.+....+++|+|++||.+.    +.++||.|.+||+.|    +|.++|+|+...+ +||||.....+. ...+ .|.++
T Consensus        33 ~Ee~~~~sftW~vk~wsel~----~k~~Sp~F~vg~~tw----ki~lfPqG~nq~~-~sVyLe~~pqe~e~~~gk~~~cc  103 (1089)
T COG5077          33 VEELLEMSFTWKVKRWSELA----KKVESPPFSVGGHTW----KIILFPQGNNQCN-VSVYLEYEPQELEETGGKYYDCC  103 (1089)
T ss_pred             HHHHhhcccceecCChhhhh----hhccCCcccccCeeE----EEEEecccCCccc-cEEEEEeccchhhhhcCcchhhh
Confidence            34566789999999999997    479999999999999    9999999985544 999998865321 1222 29999


Q ss_pred             EEEEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCC---eEeCCEEEEEEEEEEecCC
Q 047807           83 VCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKG---YLLNNTCTFGAEIYVIKPT  153 (169)
Q Consensus        83 ~~f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~---fl~~D~l~i~~~V~v~~~~  153 (169)
                      |+|.|.+-|+..+.....   .++.|+|+....+|||.+|+.+.+|..|..|   |+.+|++.|.+.|+|++++
T Consensus       104 aqFaf~Is~p~~pti~~i---N~sHhrFs~~~tDwGFt~f~dL~kl~~psp~~Ppfleeg~l~ItvyVRvlkdP  174 (1089)
T COG5077         104 AQFAFDISNPKYPTIEYI---NKSHHRFSMESTDWGFTNFIDLNKLIEPSPGRPPFLEEGTLVITVYVRVLKDP  174 (1089)
T ss_pred             hheeeecCCCCCCchhhh---hcccccccccccccchhhhhhhhhhcCCCCCCCCcccCCeEEEEEEEEEEeCC
Confidence            999999999877654332   2467999998999999999999999876544   7899999999999999985

>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.93  E-value=2.3e-08  Score=80.05  Aligned_cols=130  Identities=29%  Similarity=0.456  Sum_probs=105.4

Q ss_pred             eEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEEEe
Q 047807           12 DYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYD   91 (169)
Q Consensus        12 ~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~~~~~~~~w~~~~~f~l~l~n   91 (169)
                      .+.|.+.||+...    ..++|..|..||..|    ++.+||.|+    +++.|+.+....    + |.+.+.+.|.+.|
T Consensus         5 ~~~~~~~~~~~~~----l~~ys~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~----~-~~~~~~~~l~v~n   67 (297)
T KOG1987|consen    5 KFTWVISNFSSVG----LVIYSNGFVKGGCKW----RLSAYPKGN----YLSLTLSVSDSP----G-WERYAKLRLTVVN   67 (297)
T ss_pred             ccceeeccCcchh----hhccccceeecCceE----EEEEecCCC----EEEEEEEeccCC----C-cceeEEEEEEEcc
Confidence            3449999998876    579999999999999    999999983    799998887543    3 9999999999999


Q ss_pred             CCCCce-eeEeecCCceeeecC--CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCCCCceeEEe
Q 047807           92 QIRKDY-LAVQDAKSGVRTFDQ--QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGTLSK  161 (169)
Q Consensus        92 q~~~~~-~~~~~~~~~~~~F~~--~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~~~~~~~~~  161 (169)
                      |..... ....   .....|..  -...||+..+++...+.++..||+.++.+++-+.+.|++...+.+.+..
T Consensus        68 ~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~  137 (297)
T KOG1987|consen   68 QKSEKYLSTVE---EGFSWFRFNKVLKEWGFGKMLPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKE  137 (297)
T ss_pred             CCCcceeeeee---eeEEeccccccccccCcccccChHHhhcccCcEEEcCceEEEeeecceeeecccccchh
Confidence            988754 3321   13344433  3679999999999999988899999999999999889998888777654

>KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=1.7e-07  Score=86.87  Aligned_cols=130  Identities=22%  Similarity=0.237  Sum_probs=104.3

Q ss_pred             eEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCCCCCeEEEEEEeccCCCCCCCCeEEEEEEEEEEEe
Q 047807           12 DYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSVNVCYRLFVYD   91 (169)
Q Consensus        12 ~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~~~~~~~~w~~~~~f~l~l~n   91 (169)
                      ..+|...+...+.    ....||.|..|+.+|    ++.+.|+++ ....+++|+.+...... .. |++++++.+.+.|
T Consensus        28 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~-~s~~~~~~~~v~~   96 (1093)
T KOG1863|consen   28 STTIDGIDDKSLL----YRALSSNFGAGATKW----KILIAPKVN-SLQSTRKKLEVMPSQSL-KS-WSCGAQAVLRVKN   96 (1093)
T ss_pred             cccccCcCcchhh----hHhcCccccccccce----eeeeccccC-cccceeEEeeeccCCCC-cc-eEecchhhhcccc
Confidence            3446555544443    467899999999999    999999987 33679999999876654 33 9999999999999


Q ss_pred             CCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCCCC
Q 047807           92 QIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDT  155 (169)
Q Consensus        92 q~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~~~  155 (169)
                      ..++.....   +...|.|.....+||+..|+.++++.++..+|+.+|++.+++.|.+...++.
T Consensus        97 ~~~~~~~~~---~~~~h~~~~~~~dwg~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~  157 (1093)
T KOG1863|consen   97 TIDNLPDPE---KAIHHVFTADERDWGFSCFSTSSDIRKPEDGYVRNGLEKLEKRVRVEQPTSL  157 (1093)
T ss_pred             CCCCchhhh---hhhhhcccccccchhhccchhHhhccCcccccccccceeeeeeeeeecCCcc
Confidence            333332222   2468899988999999999999999999999999999999999999887764

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.28  E-value=0.00018  Score=60.14  Aligned_cols=80  Identities=24%  Similarity=0.337  Sum_probs=63.2

Q ss_pred             CCCeEEEEEcCccccccc----CCCcEEeCcEEE--cCeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCCeE
Q 047807            9 PPADYIFKIKSFNLLADS----TVDGFESGVFES--GGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAAWS   80 (169)
Q Consensus         9 ~~~~~~w~I~nfs~l~~~----~~~~~~S~~f~~--gG~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~w~   80 (169)
                      -.++..|+|.+|+..+..    ....++|+.|..  .||+.    +..+|-+|+  +.+.++|+|+.+.++...+.-.|+
T Consensus       278 ~~g~~iwki~~~~~~~~e~~~~~~~~~~S~~f~t~~~Gyk~----~~~~~lng~g~~~~~~~s~~~~~~~ge~d~~l~wp  353 (391)
T KOG0297|consen  278 YDGTLIWKIPDYGRKKQEAVAGATLSLFSPAFYTSKYGYKL----CARIYLNGDGTGKGTHLSLYFVVMRGEYDALLPWP  353 (391)
T ss_pred             cCCEEEEEecchhhhhHHHHhccCccccccccccccccHHH----HhHhhhcCCCCCCcceeeeeeeecccCcccccccC
Confidence            378999999999554432    146899999985  69999    888888777  455699999999987653222399


Q ss_pred             EEEEEEEEEEeC
Q 047807           81 VNVCYRLFVYDQ   92 (169)
Q Consensus        81 ~~~~f~l~l~nq   92 (169)
                      ++-+++|++++|
T Consensus       354 f~~~v~~~l~dq  365 (391)
T KOG0297|consen  354 FRQKVTLMLLDQ  365 (391)
T ss_pred             CCCceEEEEecc
Confidence            999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	169
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	6e-25
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	1e-22
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	1e-15
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	2e-13
1d00_A	168	Tumor necrosis factor receptor associated protein	2e-12
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	2e-12
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	4e-12
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	4e-12

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155

 Score = 93.0 bits (231), Expect = 6e-25
 Identities = 22/153 (14%), Positives = 55/153 (35%), Gaps = 16/153 (10%)

Query: 4   EKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKGSS---D 60
           +      A + F ++ F+ L++S      S         W    +++  P+         
Sbjct: 12  DTSWRSEATFQFTVERFSRLSES----VLSPPCFVRNLPW----KIMVMPRFYPDRPHQK 63

Query: 61  HLSLYLKIDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFD 120
            +  +L+ +  +   +  WS +    L + +    +    +        F  + ++ GF 
Sbjct: 64  SVGFFLQCNAESDSTS--WSCHAQAVLKIINYRDDEKSFSRRIS---HLFFHKENDWGFS 118

Query: 121 KFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPT 153
            F+  +E+    KG++ ++  TF   +    P 
Sbjct: 119 NFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPH 151

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145

 Score = 86.9 bits (215), Expect = 1e-22
 Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 11/141 (7%)

Query: 13  YIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDE 70
           Y++ I +F+   +   +  +S  F SG         L   PKG    S D+LSLYL +  
Sbjct: 13  YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW-CLRVNPKGLDEESKDYLSLYLLL-- 69

Query: 71  SNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQ 130
                     V   ++  + +   ++  A+   +S       Q  + GF KF+    L  
Sbjct: 70  ---VSCPKSEVRAKFKFSILNAKGEETKAM---ESQRAYRFVQGKDWGFKKFIRRDFLLD 123

Query: 131 HLKGYLLNNTCTFGAEIYVIK 151
              G L ++  T   E+ V++
Sbjct: 124 EANGLLPDDKLTLFCEVSVVQ 144

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160

 Score = 69.2 bits (169), Expect = 1e-15
 Identities = 31/157 (19%), Positives = 62/157 (39%), Gaps = 24/157 (15%)

Query: 13  YIFKIKSFNLLADSTVDG----FESGVFESG--GYYWCVCTRLVFYPKGKGSS---DHLS 63
           YI+KI +F +      +       S  F +G  GY  C+      + +   +    +++S
Sbjct: 7   YIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLCMR----LHLQLPTAQRCANYIS 62

Query: 64  LYLKIDESNSYPNAAWSVNVCYRLFVYDQ----IRKDYLAVQDAKSGVRTFDQQTSEL-- 117
           L++   +     +  W      RL + DQ    +R+++  + DAK  +  F + T     
Sbjct: 63  LFVHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNP 122

Query: 118 ---GFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK 151
              G+  F+ L  L Q    ++ ++T     E+    
Sbjct: 123 KGFGYVTFMHLEALRQR--TFIKDDTLLVRCEVSTRF 157

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192

 Score = 63.9 bits (155), Expect = 2e-13
 Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 10/146 (6%)

Query: 13  YIFKIKSFNLLADSTVDG----FESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI 68
           +I+KI  F       V G      S  F +  Y + +C R+     G G   HLSL+  +
Sbjct: 45  FIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVV 104

Query: 69  DESNSYPNAAWSVNVCYRLFVYDQ-----IRKDYLAVQDAKSGVRTFDQQTSELGFDKFL 123
            +  +     W  N    L + DQ     +   +     + S  R  +      G   F 
Sbjct: 105 MKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFC 164

Query: 124 TLAELNQHLKGYLLNNTCTFGAEIYV 149
            ++++      Y+ ++     A + +
Sbjct: 165 PVSKMEAK-NSYVRDDAIFIKAIVDL 189

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 28/144 (19%), Positives = 53/144 (36%), Gaps = 10/144 (6%)

Query: 13  YIFKIKSFNLLADSTVDG----FESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI 68
           +I+KI  F       V G      S  F +  Y + +C R+     G G   HLSL+  +
Sbjct: 21  FIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVV 80

Query: 69  DESNSYPNAAWSVNVCYRLFVYDQIRKDYLAV-----QDAKSGVRTFDQQTSELGFDKFL 123
            +  +     W  N    L + DQ  ++++         + S  R  +      G   F 
Sbjct: 81  MKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFC 140

Query: 124 TLAELNQHLKGYLLNNTCTFGAEI 147
            ++++      Y+ ++     A +
Sbjct: 141 PVSKMEAK-NSYVRDDAIFIKAIV 163

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 30/145 (20%), Positives = 49/145 (33%), Gaps = 12/145 (8%)

Query: 13  YIFKIKSFNLLADSTVDG----FESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI 68
            I+KI+ +       V G      S  F +G + + +C R+     G G   HLSL+  I
Sbjct: 42  LIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVI 101

Query: 69  DESNSYPNAAWSVNVCYRLFVYDQI--RKDYLAVQDAKSGVRTFDQQTSEL----GFDKF 122
                     W       L + DQ   R+             +F + T E+    G   F
Sbjct: 102 MRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 161

Query: 123 LTLAELNQHLKGYLLNNTCTFGAEI 147
           +    L      Y+ ++T      +
Sbjct: 162 VAQTVLEN--GTYIKDDTIFIKVIV 184

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 61.8 bits (150), Expect = 4e-12
 Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 17/149 (11%)

Query: 13  YIFKIKSFNLLADSTVDGFESGVFESGGYY---WCVCTRLVFYPKGK--GSSDHLSLYLK 67
           Y++ I +F+   +   +  +S  F SG      WC+       PKG    S D+LSLYL 
Sbjct: 9   YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLR----VNPKGLDEESKDYLSLYLL 64

Query: 68  IDESNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAE 127
           +            V   ++  + +   ++  A++        F  Q  + GF KF+    
Sbjct: 65  LVS-----CPKSEVRAKFKFSILNAKGEETKAME--SQRAYRFV-QGKDWGFKKFIRRGF 116

Query: 128 LNQHLKGYLLNNTCTFGAEIYVIKPTDTE 156
           L     G L ++  T   E+ V++ +   
Sbjct: 117 LLDEANGLLPDDKLTLFCEVSVVQDSVNI 145

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228

 Score = 60.9 bits (147), Expect = 4e-12
 Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 12/152 (7%)

Query: 13  YIFKIKSFNLLADSTVDG----FESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI 68
            I+KI+ +       V G      S  F +G + + +C R+     G G   HLSL+  I
Sbjct: 78  LIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVI 137

Query: 69  DESNSYPNAAWSVNVCYRLFVYDQ------IRKDYLAVQDAKSGVRTFDQQTSELGFDKF 122
                     W       L + DQ      +   +    ++ S  +   +     G   F
Sbjct: 138 MRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 197

Query: 123 LTLAELNQHLKGYLLNNTCTFGAEIYVIKPTD 154
           +    L      Y+ ++T      +      D
Sbjct: 198 VAQTVLEN--GTYIKDDTIFIKVIVDTSDLPD 227

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	169
3ivv_A	145	Speckle-type POZ protein; protein binding, nucleus	100.0
2foj_A	155	Ubiquitin carboxyl-terminal hydrolase 7; MATH doma	100.0
4gjh_A	178	TNF receptor-associated factor 5; TRAF domain, imm	99.97
4ghu_A	198	TNF receptor-associated factor 3; alpha/beta, inna	99.96
1lb6_A	160	TNF receptor-associated factor 6; TRAF6-CD40 compl	99.96
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.96
1ca9_A	192	TRAF2, protein (TNF receptor associated factor 2);	99.96
2gkw_A	192	TNF receptor-associated factor 3; CD40, NF-KB sign	99.96
1d00_A	168	Tumor necrosis factor receptor associated protein	99.96
1flk_A	228	TNF receptor associated factor 3; TNF signaling, T	99.95
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.94
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.69

>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A

Probab=100.00  E-value=9.8e-34  Score=203.86  Aligned_cols=137  Identities=24%  Similarity=0.376  Sum_probs=115.9

Q ss_pred             CCCcCCCCeEEEEEcCcccccccCCCcEEeCcEEEcCe---EeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCC
Q 047807            4 EKRSLPPADYIFKIKSFNLLADSTVDGFESGVFESGGY---YWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAA   78 (169)
Q Consensus         4 ~~~~~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~---~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~   78 (169)
                      .|.+...++|+|+|+|||.+++..++.++||+|.+|||   +|    +|++||+|+  +..+|||+||+|.+..    + 
T Consensus         4 ~m~~~~~~~~~w~I~~fs~~~~~~g~~~~S~~F~~gg~~g~~W----~i~~yP~G~~~~~~~~lSlyL~l~~~~----~-   74 (145)
T 3ivv_A            4 GSGKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW----CLRVNPKGLDEESKDYLSLYLLLVSCP----K-   74 (145)
T ss_dssp             -CCCCCEEEEEEEESSGGGCCCCTTCCEECCCEEESGGGCEEE----EEEEETTCSSGGGTTEEEEEEEEEECS----S-
T ss_pred             CCCcEEEEEEEEEEcCchHHhhcCCCEEECCCcCCCCcCCceE----EEEEEcCCCCCCCCCeEEEEEEEcCCC----C-
Confidence            46788899999999999998752247899999999995   99    999999998  3468999999998752    2 


Q ss_pred             eEEEEEEEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecC
Q 047807           79 WSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP  152 (169)
Q Consensus        79 w~~~~~f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~  152 (169)
                      |+++|+|+|+|+||+++.......  ...+.|.. ..+|||++||++++|++++++||+||+|+|+|+|+|+++
T Consensus        75 w~v~a~f~l~llnq~~~~~~~~~~--~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~I~~~V~V~~d  145 (145)
T 3ivv_A           75 SEVRAKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQD  145 (145)
T ss_dssp             SEEEEEEEEEEECTTSCEEEEEEC--SSCEEEET-TCEEEEEEEEEHHHHHCGGGCSSGGGCEEEEEEEEECC-
T ss_pred             CcEEEEEEEEEEecCCCceeeecc--cceEEecC-CCCcCHHHeEEhhhhccccCCcEeCCEEEEEEEEEEEeC
Confidence            999999999999999886554321  35688874 689999999999999776799999999999999999864

>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A

Probab=100.00  E-value=3.3e-33  Score=203.09  Aligned_cols=135  Identities=16%  Similarity=0.301  Sum_probs=114.4

Q ss_pred             CCCCeEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCCC---CCCeEEEEEEeccCCCCCCCCeEEEEE
Q 047807            8 LPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGKG---SSDHLSLYLKIDESNSYPNAAWSVNVC   84 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~~---~~~~lSvyL~~~~~~~~~~~~w~~~~~   84 (169)
                      ...++|+|+|+|||.++    +.++|+.|.+||++|    +|++||+|+.   ..+|||+||+|.... .+.+ |++.|+
T Consensus        16 ~~~~~~~w~I~nfS~~~----~~~~S~~f~~gg~~W----~i~~yP~G~~~~~~~~~lSlyL~~~~~~-~~~~-w~v~a~   85 (155)
T 2foj_A           16 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPW----KIMVMPRFYPDRPHQKSVGFFLQCNAES-DSTS-WSCHAQ   85 (155)
T ss_dssp             CSEEEEEEEESSGGGCC----SCEECCCEEETTEEE----EEEEEEEC------CBEEEEEEEESTTC-CCSS-CEEEEE
T ss_pred             CCCcEEEEEECChhhcC----CceEcCCEEECCccE----EEEEEECCCCCCCCCCEEEEEEEeCCCC-CCCC-CEEEEE
Confidence            45689999999999995    689999999999999    9999999972   468999999996543 3555 999999


Q ss_pred             EEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCCCC
Q 047807           85 YRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDT  155 (169)
Q Consensus        85 f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~~~  155 (169)
                      |+|+|+||+++.....+   ...+.|.....+|||++||++++|+++++|||+||+|+|+|+|+|.+++|.
T Consensus        86 ~~l~l~~~~~~~~~~~~---~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~Ie~~V~V~~~tG~  153 (155)
T 2foj_A           86 AVLKIINYRDDEKSFSR---RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHGV  153 (155)
T ss_dssp             EEEEECCSSCGGGCEEE---EEEEEEETTBCEEEEEEEEEHHHHTCTTTSSCBTTBEEEEEEEEECCCBSS
T ss_pred             EEEEEEcCCCCcceEEe---ccEEEeCCCCCCEeECCeEEHHHhcCcCCCceECCEEEEEEEEEEeCcccc
Confidence            99999999987633332   257889876789999999999999988899999999999999999888763

>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus}

Probab=99.97  E-value=3.3e-31  Score=196.90  Aligned_cols=141  Identities=19%  Similarity=0.294  Sum_probs=112.5

Q ss_pred             cCCCCeEEEEEcCccccccc---C-CCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCC-CCCC
Q 047807            7 SLPPADYIFKIKSFNLLADS---T-VDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNS-YPNA   77 (169)
Q Consensus         7 ~~~~~~~~w~I~nfs~l~~~---~-~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~-~~~~   77 (169)
                      ....++|+|+|+|||.+++.   + +..++||.|.+|  ||+|    +|.+||+|+  +..+|||+||+|.+.+. ...+
T Consensus        20 ~~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~~g~~G~~W----~i~~yP~G~~~~~~~~lSlyL~l~~~~~d~~l~   95 (178)
T 4gjh_A           20 ACYSGKLIWKVTDYRVKKREAVEGHTVSVFSQPFYTSRCGYRL----CARAYLNGDGSGKGTHLSLYFVVMRGEFDSLLQ   95 (178)
T ss_dssp             CCSSSEEEEEECCHHHHHHHHHTTSCCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEBCCTTGGGSC
T ss_pred             cccceEEEEEECCHHHHHhhhhcCCCcEEECCCeEeCCCCeEE----EEEEEECCCCCCCCCEEEEEEEEecCCCCcccC
Confidence            35689999999999998762   2 248999999999  9999    999999998  34589999999976543 1224


Q ss_pred             CeEEEEEEEEEEEeCCCCceeeEee--cCCceeeecC----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807           78 AWSVNVCYRLFVYDQIRKDYLAVQD--AKSGVRTFDQ----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK  151 (169)
Q Consensus        78 ~w~~~~~f~l~l~nq~~~~~~~~~~--~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~  151 (169)
                       |++.++|+|+|+||+++.......  .....+.|+.    .+.+|||.+||++++|++++++||+||+|+|+|+|+|.+
T Consensus        96 -W~v~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~F~~p~~~~~~~wG~~~Fi~~~~L~~~~~~yL~dD~l~I~~~V~i~~  174 (178)
T 4gjh_A           96 -WPFRQRVTLMLLDQSGKKNHIVETFKADPNSSSFKRPDGEMNIASGCPRFVSHSTLENSKNTYIKDDTLFLKVAVDLTD  174 (178)
T ss_dssp             -SSCCCEEEEEECCTTSSCCCEEEEEECCTTCGGGSCCSSSBCCCEEEEEEEEHHHHHCTTCCSSBTTBEEEEEEECCTT
T ss_pred             -CceEEEEEEEEEcCCCCcceeEEeeccCCccccccCCcccccCCcChhheeEHHHhhccccCcCcCCEEEEEEEEEecC
Confidence             999999999999999875433221  0113467763    357899999999999997779999999999999997765


Q ss_pred             C
Q 047807          152 P  152 (169)
Q Consensus       152 ~  152 (169)
                      .
T Consensus       175 ~  175 (178)
T 4gjh_A          175 L  175 (178)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.96  E-value=1.1e-30  Score=197.15  Aligned_cols=141  Identities=19%  Similarity=0.210  Sum_probs=111.1

Q ss_pred             CCCCeEEEEEcCcccccc---cC-CCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCC
Q 047807            8 LPPADYIFKIKSFNLLAD---ST-VDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAA   78 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~---~~-~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~   78 (169)
                      ...++|+|+|+|||.+++   .+ ++.++||+|.+|  ||+|    +|.+||+|+  +..+|||+||.+.+++.. ..+ 
T Consensus        37 ~~~g~~~w~I~nfS~~~~~~~~~~g~~i~S~~F~vg~~Gy~W----~i~~yPnG~~~~~~~~lSlyL~l~~g~~D~~l~-  111 (198)
T 4ghu_A           37 SYNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM----CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLP-  111 (198)
T ss_dssp             CSSSEEEEEECCHHHHHHHHHTTSSCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-
T ss_pred             ccccEEEEEECCHHHHHhhhccCCCcEEECCCeEECCCCcEE----EEEEEeCCCCCCCCCeEEEEEEecCCccCCCCC-
Confidence            467999999999999876   23 478999999999  9999    999999998  346899999999875431 123 


Q ss_pred             eEEEEEEEEEEEeCCCCceeeEeecC--Cc----eeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecC
Q 047807           79 WSVNVCYRLFVYDQIRKDYLAVQDAK--SG----VRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKP  152 (169)
Q Consensus        79 w~~~~~f~l~l~nq~~~~~~~~~~~~--~~----~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~  152 (169)
                      |++.++|+|+|+||.++.........  ..    .+.|...+.+|||++||++++|+  ++|||+||+|+|+|+|+|+..
T Consensus       112 wp~~a~~~l~Lldq~~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~  189 (198)
T 4ghu_A          112 WPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDL  189 (198)
T ss_dssp             SSCCCCEEEEECCCSTTCCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTBEEEEEEECCTTC
T ss_pred             ceEEEEEEEEEEcCCCCccceEEEeecCcccceecCCcccCcCCcCchhEeEHHHhh--hcCCeeCCEEEEEEEEEeccC
Confidence            99999999999999976543322100  01    12233446789999999999999  589999999999999999887


Q ss_pred             CCC
Q 047807          153 TDT  155 (169)
Q Consensus       153 ~~~  155 (169)
                      ++.
T Consensus       190 ~~~  192 (198)
T 4ghu_A          190 PDP  192 (198)
T ss_dssp             C--
T ss_pred             CCC
Confidence            764

>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A

Probab=99.96  E-value=1.4e-29  Score=184.88  Aligned_cols=138  Identities=19%  Similarity=0.263  Sum_probs=104.6

Q ss_pred             CCCCeEEEEEcCcccccc-cC-CC--cEEeCcEEEc--CeEeeeceEEEEeeCCCC---CCCeEEEEEEeccCCCC-CCC
Q 047807            8 LPPADYIFKIKSFNLLAD-ST-VD--GFESGVFESG--GYYWCVCTRLVFYPKGKG---SSDHLSLYLKIDESNSY-PNA   77 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~-~~-~~--~~~S~~f~~g--G~~W~~~~~l~~yP~g~~---~~~~lSvyL~~~~~~~~-~~~   77 (169)
                      ...++|+|+|+|||.+++ .+ ++  .++||+|.+|  ||+|    +|++||+|++   ..+|||+||.+.+++.. ..+
T Consensus         2 ~~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w----~i~~yP~G~~~~~~~~~lSlyL~l~~~~~d~~l~   77 (160)
T 1lb6_A            2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKL----CMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLP   77 (160)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEE----EEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSC
T ss_pred             ccCcEEEEEECCHHHHHHhhhcCCCeEEECcCeecCCCCeeE----EEEEEecCCCCCCCCCEEEEEEEEeecCCCccCC
Confidence            356899999999999875 22 34  8999999999  9999    9999999973   26899999999865442 233


Q ss_pred             CeEEEEEEEEEEEeCCCCcee--eEee--cCCceeeecC-----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEE
Q 047807           78 AWSVNVCYRLFVYDQIRKDYL--AVQD--AKSGVRTFDQ-----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIY  148 (169)
Q Consensus        78 ~w~~~~~f~l~l~nq~~~~~~--~~~~--~~~~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~  148 (169)
                       |++.++|+|+|+||.++...  ....  .......|..     ...+|||++||++++|+  +++||+||+|+|+|+|.
T Consensus        78 -wp~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~~G~~~Fi~~~~L~--~~~yl~dD~l~I~~~V~  154 (160)
T 1lb6_A           78 -WPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS  154 (160)
T ss_dssp             -SSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred             -CceeeeEEEEEEcCCCccccccceEEeecCCcchhccCCcccCCCCCcCEeeEeEHHHhh--hCCCccCCEEEEEEEEE
Confidence             99999999999999876311  1100  0011223542     13479999999999999  68999999999999999


Q ss_pred             EecC
Q 047807          149 VIKP  152 (169)
Q Consensus       149 v~~~  152 (169)
                      |+.+
T Consensus       155 v~~~  158 (160)
T 1lb6_A          155 TRFD  158 (160)
T ss_dssp             C---
T ss_pred             Eeec
Confidence            9765

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.96  E-value=2.2e-29  Score=201.25  Aligned_cols=148  Identities=22%  Similarity=0.338  Sum_probs=116.0

Q ss_pred             CCCCeEEEEEcCcccccccCCCcEEeCcEEEcCe---EeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCCeEEE
Q 047807            8 LPPADYIFKIKSFNLLADSTVDGFESGVFESGGY---YWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAAWSVN   82 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~---~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~w~~~   82 (169)
                      ...++|+|+|+|||.++...++.++||.|.+|||   +|    +|.+||+|+  +..+|+|+||.|.+...     |++.
T Consensus         4 ~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W----~i~~yP~G~~~~~~~~lslyL~~~~~~~-----~~v~   74 (312)
T 3hqi_A            4 VVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW----CLRVNPKGLDEESKDYLSLYLLLVSCPK-----SEVR   74 (312)
T ss_dssp             EEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEE----EEEEETTCCC--CTTEEEEEEEEEECCC------CEE
T ss_pred             eEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceE----EEEEECCCCCccCCCcEEEEEEEcCCCC-----CcEE
Confidence            4568999999999999743358999999999985   99    999999998  35689999999986542     9999


Q ss_pred             EEEEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCCCCcee---E
Q 047807           83 VCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTDTEGT---L  159 (169)
Q Consensus        83 ~~f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~~~~~~---~  159 (169)
                      |+|+|+|+||+++.......  ...+.|.+ +.+|||++||++++|+++++|||+||+|+|+|+|+|++.......   .
T Consensus        75 a~~~~~l~~~~~~~~~~~~~--~~~~~F~~-~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~  151 (312)
T 3hqi_A           75 AKFKFSILNAKGEETKAMES--QRAYRFVQ-GKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTM  151 (312)
T ss_dssp             EEEEEEEECTTSCEEEEEEC--SSCEEECT-TCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCC
T ss_pred             EEEEEEEEeCCCCccccccc--CCceeCCC-CCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccc
Confidence            99999999999876554331  35678885 569999999999999877789999999999999999975432221   1


Q ss_pred             EeeecCCc
Q 047807          160 SKEDSLAI  167 (169)
Q Consensus       160 ~~~~~~~~  167 (169)
                      ..+.+|++
T Consensus       152 ~~~~~p~~  159 (312)
T 3hqi_A          152 NMVKVPEC  159 (312)
T ss_dssp             SSCCCCCC
T ss_pred             cccCCCCc
Confidence            23556654

>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A

Probab=99.96  E-value=2e-29  Score=189.36  Aligned_cols=138  Identities=19%  Similarity=0.271  Sum_probs=108.5

Q ss_pred             CCCCeEEEEEcCccccccc-C-CC--cEEeCcEEE--cCeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCC-CCC
Q 047807            8 LPPADYIFKIKSFNLLADS-T-VD--GFESGVFES--GGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYP-NAA   78 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~~-~-~~--~~~S~~f~~--gG~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~-~~~   78 (169)
                      ...++|+|+|+|||.+++. + ++  .++||.|.+  |||+|    +|.+||+|+  +..+|||+||++.+....+ .+ 
T Consensus        40 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~v~~gG~~W----~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~-  114 (192)
T 1ca9_A           40 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM----CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLR-  114 (192)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-
T ss_pred             ccCceEEEEECCHHHHHHHhhcCCCceEECceEEeCCCCeEE----EEEEEeCCCCCCCCCEEEEEEEEccCCCCCcCC-
Confidence            4689999999999998752 2 33  699999999  99999    999999997  3458999999998765432 34 


Q ss_pred             eEEEEEEEEEEEeCCCCceeeEee-cCCceeeec----CCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807           79 WSVNVCYRLFVYDQIRKDYLAVQD-AKSGVRTFD----QQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK  151 (169)
Q Consensus        79 w~~~~~f~l~l~nq~~~~~~~~~~-~~~~~~~F~----~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~  151 (169)
                      |++.++|+|+|+||+++......- .......|.    ..+.+|||++||++++|++ ++|||+||+|+|+|+|+|.+
T Consensus       115 W~~~a~~~l~lldq~~~~~~~~~~~~~~~~~~f~rp~~~~~~~wG~~~Fi~~~~L~~-~~gyl~dD~l~I~~~V~V~~  191 (192)
T 1ca9_A          115 WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEA-KNSYVRDDAIFIKAIVDLTG  191 (192)
T ss_dssp             SSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETHHHHS-SCSSCBTTEEEEEEEECCTT
T ss_pred             CceEEEEEEEEECCCCCceeeEeeccCCchhhhcCCccCCCCCcChhheeEHHHhhh-ccCCEeCCEEEEEEEEEecC
Confidence            999999999999999874322110 001123464    2356899999999999986 58999999999999998854

>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A

Probab=99.96  E-value=1.9e-29  Score=189.50  Aligned_cols=136  Identities=19%  Similarity=0.243  Sum_probs=108.2

Q ss_pred             CCCeEEEEEcCcccccc-cC-CC--cEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCCe
Q 047807            9 PPADYIFKIKSFNLLAD-ST-VD--GFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAAW   79 (169)
Q Consensus         9 ~~~~~~w~I~nfs~l~~-~~-~~--~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~w   79 (169)
                      ..++|+|+|+|||.+++ .+ ++  .++||+|.+|  ||+|    +|++||+|+  +..+|+|+||++.+++.. ..+ |
T Consensus        38 ~~g~~~w~I~~fS~~~~~~~~g~~~~i~S~~F~vg~~Gykw----~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~-w  112 (192)
T 2gkw_A           38 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM----CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLP-W  112 (192)
T ss_dssp             CSSEEEEEEECHHHHHHHHHHTSCSCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-S
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCceEEcccEEECCCCcEE----EEEEEeCCCCCCCCCEEEEEEEEecCCCCccCC-C
Confidence            68999999999999874 22 34  5999999999  9999    999999998  346899999999865542 224 9


Q ss_pred             EEEEEEEEEEEeCCCCceeeEeec--CCceeeecC----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807           80 SVNVCYRLFVYDQIRKDYLAVQDA--KSGVRTFDQ----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK  151 (169)
Q Consensus        80 ~~~~~f~l~l~nq~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~  151 (169)
                      ++.++|+|+|+||.++........  ....+.|..    .+.+|||++||++++|+  ++|||+||+|+|+|+|.|.+
T Consensus       113 p~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~wG~~~Fi~~~~L~--~~gyl~dD~l~I~~~V~v~~  188 (192)
T 2gkw_A          113 PFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD  188 (192)
T ss_dssp             SCCCCEEEEECCCSTTCCCEEEEECCCTTCTTSSCCSSSBCCCEEEEEEEEHHHHH--HTTSCBTTEEEEEEEECCTT
T ss_pred             cEEEEEEEEEECCCCCccceEEEEecCCCcccccCCCCCCcCCCChHHEeEHHHhC--cCCCeeCCEEEEEEEEEcCC
Confidence            999999999999998754332110  012356753    24789999999999999  47999999999999997754

>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A

Probab=99.96  E-value=2.6e-29  Score=184.71  Aligned_cols=138  Identities=19%  Similarity=0.275  Sum_probs=107.0

Q ss_pred             CCCCeEEEEEcCccccccc-C-CC--cEEeCcEE--EcCeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCC-CCC
Q 047807            8 LPPADYIFKIKSFNLLADS-T-VD--GFESGVFE--SGGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYP-NAA   78 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~~-~-~~--~~~S~~f~--~gG~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~-~~~   78 (169)
                      ...++|+|+|+|||.+++. + ++  .++||+|.  +|||+|    +|++||+|+  +..+|||+||++.+....+ .+ 
T Consensus        16 ~~~g~~~w~I~nfS~~~~~~~~g~~~~i~S~~F~~~~gG~~W----~i~~yP~G~~~~~~~~lSlyL~l~~~~~~~~~~-   90 (168)
T 1d00_A           16 TYDGVFIWKISDFARKRQEAVAGRIPAIFSPAFYTSRYGYKM----CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLR-   90 (168)
T ss_dssp             CSSSEEEEEEESHHHHHHHHHTTSSCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-
T ss_pred             ccCCEEEEEECCHHHHHHHhhcCCCeEEECCCeecCCCCEEE----EEEEEeCCCCCCCCcEEEEEEEEecCCCCccCC-
Confidence            3689999999999998763 2 33  49999996  789999    999999997  3458999999998765432 34 


Q ss_pred             eEEEEEEEEEEEeCCCCceeeEee-cCCceeeecC----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807           79 WSVNVCYRLFVYDQIRKDYLAVQD-AKSGVRTFDQ----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK  151 (169)
Q Consensus        79 w~~~~~f~l~l~nq~~~~~~~~~~-~~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~  151 (169)
                      |++.++|+|+|+||+++.+....- .....+.|..    .+.+|||++||++++|+++ +|||+||+|+|+|+|+|.+
T Consensus        91 w~~~~~~~l~ll~q~~~~~~~~~~~~~~~~~~f~~p~~~~~~~~G~~~Fi~~~~L~~~-~gyl~dD~l~I~~~V~v~~  167 (168)
T 1d00_A           91 WPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKMEAK-NSYVRDDAIFIKAIVDLTG  167 (168)
T ss_dssp             SSCCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETTTTTSS-SSSSBTTEEEEEEEECCTT
T ss_pred             CceEEEEEEEEECCCCCccceeccccCcchhhccCCCcCCCCCcCcceEeEHHHhccc-CCceeCCEEEEEEEEEecC
Confidence            999999999999999865332110 0001235653    3578999999999999942 3999999999999998753

>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A

Probab=99.95  E-value=1.1e-28  Score=189.86  Aligned_cols=138  Identities=19%  Similarity=0.223  Sum_probs=109.6

Q ss_pred             CCCeEEEEEcCcccccc-cC-C--CcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCCe
Q 047807            9 PPADYIFKIKSFNLLAD-ST-V--DGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAAW   79 (169)
Q Consensus         9 ~~~~~~w~I~nfs~l~~-~~-~--~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~w   79 (169)
                      ..++|+|+|+|||.+++ .+ +  ..++||+|.+|  ||+|    +|.+||+|+  +..+|+|+||++.+++.. ..+ |
T Consensus        74 ~~g~~~wkI~nfS~~~~~~~~g~~~~i~S~~F~vg~~Gy~w----~i~~yPnG~~~~~~~~lSlyL~l~~~~~d~~l~-W  148 (228)
T 1flk_A           74 YNGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM----CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLP-W  148 (228)
T ss_dssp             SSSEEEEEEECHHHHHHHHHTTSCCCEECCCEESSTTSCEE----CEEEETTCCGGGTTTEEEEEECCBCCTTTTSSC-S
T ss_pred             cCcEEEEEECCHHHHHHHhhcCCCeeEECceEEeCCCCcEE----EEEEEcCCCCCCCCCEEEEEEEEecCCccccCC-C
Confidence            68999999999999875 22 2  38999999999  9999    999999998  346899999999865542 224 9


Q ss_pred             EEEEEEEEEEEeCCCCceeeEeec--CCceeeecC----CCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCC
Q 047807           80 SVNVCYRLFVYDQIRKDYLAVQDA--KSGVRTFDQ----QTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPT  153 (169)
Q Consensus        80 ~~~~~f~l~l~nq~~~~~~~~~~~--~~~~~~F~~----~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~  153 (169)
                      ++.++|+|+|+||.++........  ....+.|..    .+.+|||++||++++|+  ++|||+||+|+|+|+|.|.+.+
T Consensus       149 p~~a~~~l~lldq~~~~~~~~~~~~~~~~~~~F~rp~~~~~~~wG~~~Fi~~~~L~--~~gyL~dD~l~I~~~V~v~~~~  226 (228)
T 1flk_A          149 PFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSDLP  226 (228)
T ss_dssp             SCCCCEEEEECCCSSSCCCEEEEECCCTTCTTSSSCSSSBCCCCSEEEEEEHHHHS--SSTTCCSSEEEEEEECCCTTSC
T ss_pred             cEEEEEEEEEEcCCCCccceeeeecCCCccccccCCccCCCCCcCHHHeeEHHHHc--cCCCccCCEEEEEEEEEccccc
Confidence            999999999999998764332110  012335652    35689999999999999  5899999999999999887644

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.94  E-value=2.3e-27  Score=201.64  Aligned_cols=134  Identities=16%  Similarity=0.305  Sum_probs=112.2

Q ss_pred             CCCCeEEEEEcCcccccccCCCcEEeCcEEEcCeEeeeceEEEEeeCCC--C-CCCeEEEEEEeccCCCCCCCCeEEEEE
Q 047807            8 LPPADYIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK--G-SSDHLSLYLKIDESNSYPNAAWSVNVC   84 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG~~W~~~~~l~~yP~g~--~-~~~~lSvyL~~~~~~~~~~~~w~~~~~   84 (169)
                      .+.++|+|+|+|||.++    +.++|++|.+||++|    +|.+||+|+  + ..+|||+||.|.+.. .+.+ |.+.|+
T Consensus        28 ~~~~~~~w~I~nfS~~~----~~~~S~~F~vgg~~W----~i~~yP~G~~~~~~~~~lSlyL~~~~~~-~~~~-w~v~a~   97 (522)
T 2f1z_A           28 RSEATFQFTVERFSRLS----ESVLSPPCFVRNLPW----KIMVMPRFYPDRPHQKSVGFFLQCNAES-DSTS-WSCHAQ   97 (522)
T ss_dssp             CSEEEEEEEESSCTTCC----SCEECCCEEETTEEE----EEEECBC--------CBBCEEEEESTTC-CCSS-CBEEEE
T ss_pred             cCCcEEEEEECChhhcC----CceeCCCEEECCEee----EEEEEeCCCCCCCCCCeEEEEEEecCCC-CCCC-ceEEEE
Confidence            46789999999999997    379999999999999    999999996  2 568999999998763 4556 999999


Q ss_pred             EEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCCC
Q 047807           85 YRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPTD  154 (169)
Q Consensus        85 f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~~  154 (169)
                      |+|+|+||.++.....+   ...++|.....+|||.+||++++|.++++|||+||+++|+|+|+|..+++
T Consensus        98 f~l~l~n~~~~~~~~~~---~~~~~F~~~~~~wG~~~Fi~~~~L~~~~~g~L~nD~l~i~~~V~v~~p~g  164 (522)
T 2f1z_A           98 AVLKIINYRDDEKSFSR---RISHLFFHKENDWGFSNFMAWSEVTDPEKGFIDDDKVTFEVFVQADAPHG  164 (522)
T ss_dssp             EEEEECCTTCGGGCEEE---ECCEEECGGGCEEEESSSSBHHHHSCGGGSSCBTTBEEEEEEEEECCCBS
T ss_pred             EEEEEEcCCCCccceec---cceeEecCCCCCcchhheeEhhHhcCcccCcccCCcEEEEEEeecccccc
Confidence            99999999987654433   25788987678999999999999987789999999999999999976554

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.69  E-value=5.4e-17  Score=138.99  Aligned_cols=145  Identities=14%  Similarity=0.183  Sum_probs=109.4

Q ss_pred             CCcCCCCeEEEEEcCcccccccCCCcEEeCcEEE-cCeEeeeceEEEEeeCCCCCCCeEEEEEEeccCCCCCCCCeEE-E
Q 047807            5 KRSLPPADYIFKIKSFNLLADSTVDGFESGVFES-GGYYWCVCTRLVFYPKGKGSSDHLSLYLKIDESNSYPNAAWSV-N   82 (169)
Q Consensus         5 ~~~~~~~~~~w~I~nfs~l~~~~~~~~~S~~f~~-gG~~W~~~~~l~~yP~g~~~~~~lSvyL~~~~~~~~~~~~w~~-~   82 (169)
                      +++..+..+.|+|.||+++...++..++||.|.. .||++    +|.+||++   ..|+|+|+++.+++....-+|++ .
T Consensus       400 ~t~G~CP~~vw~i~nfs~~l~~~~~~~~Sp~Fys~~GY~~----~v~l~~~~---~~~~~~~~~l~sG~~D~~L~WP~~~  472 (592)
T 4gwm_A          400 LSETRCPHHIWHIRNFTQFIGSPNGTLYSPPFYSSKGYAF----QIYLNLAH---VTNAGIYFHLISGANDDQLQWPCPW  472 (592)
T ss_dssp             EESSCCCSEEEEECSCGGGTTCTTCEEECCCEECTTSCEE----EEEEECCS---SSEEEEEEEEECCTTGGGSCSSCCS
T ss_pred             EeeCCCCCCceeecCHHHhhcCCCCceeCCCccCCCCeEE----EEEEecCC---CceEEEEEEEecCCCCCCccCCCCC
Confidence            5677899999999999998765557899999985 69999    99999976   57999999999876511111999 5


Q ss_pred             EEEEEEEEeCCCCceee---Ee--ec------CC------------ceeeecC-----CCCCcCccccccchhhccCCCC
Q 047807           83 VCYRLFVYDQIRKDYLA---VQ--DA------KS------------GVRTFDQ-----QTSELGFDKFLTLAELNQHLKG  134 (169)
Q Consensus        83 ~~f~l~l~nq~~~~~~~---~~--~~------~~------------~~~~F~~-----~~~~~G~~~fi~~~~L~~~~~~  134 (169)
                      -+++|+|+||+......   ..  +.      ..            ....|.+     ++.+|||+.||+++.|+  ++.
T Consensus       473 ~q~t~~llDQ~pd~~~rms~~~s~ttdp~~~~~~~~~~w~~P~~~g~~~~~~~~~~~~r~~~~G~~~fish~~l~--~r~  550 (592)
T 4gwm_A          473 QQATMTLLDQNPDIRQRMSNQRSITTDPFMTTDNGNYFWDRPSKVGTVALFSNGTQFRRGGGYGTSAFITHERLK--SRD  550 (592)
T ss_dssp             EEEEEEECCCCSSGGGCCCEEEEEECCTTCBCTTSCBTTSCHHHHCEEEECTTCCEEEEEEEEEEEEEEEHHHHT--STT
T ss_pred             CEEEEEEeCCCCChHhcCceeEEEEcCCcccCcccccccCCcccccccccccCCcceeecCCcCccccccHHHHh--hcC
Confidence            78999999997553211   10  00      00            0112222     24578999999999999  688


Q ss_pred             eEeCCEEEEEEEEEEecCCCCcee
Q 047807          135 YLLNNTCTFGAEIYVIKPTDTEGT  158 (169)
Q Consensus       135 fl~~D~l~i~~~V~v~~~~~~~~~  158 (169)
                      ||+||+|+|.++|+-+......++
T Consensus       551 fiK~d~~~i~~~~eD~~~l~~~~~  574 (592)
T 4gwm_A          551 FIKGDDVYILLTVEDISHLNSTQI  574 (592)
T ss_dssp             SSBTTBEEEEEEEEECGGGSSCCC
T ss_pred             cccCCeEEEEEEEEeCccccccCC
Confidence            999999999999988877665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	169
d2cr2a1	146	b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H	3e-18
d1czya1	152	b.8.1.1 (A:350-501) TNF receptor associated factor	3e-17
d1l0aa1	155	b.8.1.1 (A:350-504) TNF receptor associated factor	3e-16
d1lb6a_	155	b.8.1.1 (A:) TNF receptor associated factor 6 (TRA	5e-13

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (183), Expect = 3e-18
 Identities = 32/143 (22%), Positives = 57/143 (39%), Gaps = 11/143 (7%)

Query: 13  YIFKIKSFNLLADSTVDGFESGVFESGGYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDE 70
           Y++ I +F+   +   +  +S  F SG         L   PKG    S D+LSLYL +  
Sbjct: 7   YMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW-CLRVNPKGLDEESKDYLSLYLLLV- 64

Query: 71  SNSYPNAAWSVNVCYRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQ 130
                     V   ++  + +   ++  A+   +S       Q  + GF KF+    L  
Sbjct: 65  ----SCPKSEVRAKFKFSILNAKGEETKAM---ESQRAYRFVQGKDWGFKKFIRRDFLLD 117

Query: 131 HLKGYLLNNTCTFGAEIYVIKPT 153
              G L ++  T   E+ V++ +
Sbjct: 118 EANGLLPDDKLTLFCEVSVVQDS 140

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 3e-17
 Identities = 28/147 (19%), Positives = 52/147 (35%), Gaps = 10/147 (6%)

Query: 13  YIFKIKSFNLLADSTVDG----FESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI 68
           +I+KI  F       V G      S  F +  Y + +C R+     G G   HLSL+  +
Sbjct: 5   FIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKMCLRIYLNGDGTGRGTHLSLFFVV 64

Query: 69  DESNSYPNAAWSVNVCYRLFVYDQ-----IRKDYLAVQDAKSGVRTFDQQTSELGFDKFL 123
            +  +     W  N    L + DQ     +   +     + S  R  +      G   F 
Sbjct: 65  MKGPNDALLRWPFNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFC 124

Query: 124 TLAELNQHLKGYLLNNTCTFGAEIYVI 150
            ++++      Y+ ++     A + + 
Sbjct: 125 PVSKMEAK-NSYVRDDAIFIKAIVDLT 150

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 3e-16
 Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 12/147 (8%)

Query: 13  YIFKIKSFNLLADSTVDG----FESGVFESGGYYWCVCTRLVFYPKGKGSSDHLSLYLKI 68
            I+KI+ +       V G      S  F +G + + +C R+     G G   HLSL+  I
Sbjct: 5   LIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKMCARVYLNGDGMGKGTHLSLFFVI 64

Query: 69  DESNSYPNAAWSVNVCYRLFVYDQ------IRKDYLAVQDAKSGVRTFDQQTSELGFDKF 122
                     W       L + DQ      +   +    ++ S  +   +     G   F
Sbjct: 65  MRGEYDALLPWPFKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVF 124

Query: 123 LTLAELNQHLKGYLLNNTCTFGAEIYV 149
           +    L      Y+ ++T      +  
Sbjct: 125 VAQTVLEN--GTYIKDDTIFIKVIVDT 149

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 5e-13
 Identities = 29/151 (19%), Positives = 62/151 (41%), Gaps = 20/151 (13%)

Query: 13  YIFKIKSFNLLADSTVDG----FESGVFESGGYYWCVCTRLVFYPKGKG---SSDHLSLY 65
           YI+KI +F +      +       S  F +G   + +C  +  + +       ++++SL+
Sbjct: 7   YIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKLC--MRLHLQLPTAQRCANYISLF 64

Query: 66  LKIDESNSYPNAAWSVNVCYRLFVYDQI----RKDYLAVQDAKSGVRTFDQQTSE----- 116
           +   +     +  W      RL + DQ     R+++  + DAK  +  F + T       
Sbjct: 65  VHTMQGEYDSHLPWPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKG 124

Query: 117 LGFDKFLTLAELNQHLKGYLLNNTCTFGAEI 147
            G+  F+ L  L Q  + ++ ++T     E+
Sbjct: 125 FGYVTFMHLEALRQ--RTFIKDDTLLVRCEV 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	169
d2cr2a1	146	Speckle-type poz protein SPOP {Human (Homo sapiens	99.97
d1l0aa1	155	TNF receptor associated factor 3 (TRAF3) {Human (H	99.96
d1czya1	152	TNF receptor associated factor 2 (TRAF2) {Human (H	99.96
d1lb6a_	155	TNF receptor associated factor 6 (TRAF6) {Human (H	99.95

>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-31  Score=189.78  Aligned_cols=132  Identities=24%  Similarity=0.363  Sum_probs=111.8

Q ss_pred             CCeEEEEEcCcccccccCCCcEEeCcEEEcC---eEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCCCCCCeEEEEE
Q 047807           10 PADYIFKIKSFNLLADSTVDGFESGVFESGG---YYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSYPNAAWSVNVC   84 (169)
Q Consensus        10 ~~~~~w~I~nfs~l~~~~~~~~~S~~f~~gG---~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~~~~~w~~~~~   84 (169)
                      ..+|+|+|.|||.+++..++.++||.|.+||   ++|    +|.+||+|.  +..+||||||.+.+...     |++.++
T Consensus         4 ~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W----~l~lyp~G~~~~~~~~lSv~L~~~~~~~-----~~v~~~   74 (146)
T d2cr2a1           4 KFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKW----CLRVNPKGLDEESKDYLSLYLLLVSCPK-----SEVRAK   74 (146)
T ss_dssp             EEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCB----EEEECTTCSSSSSSSBCCEEEECCCCSS-----SEEEEE
T ss_pred             EEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEE----EEEEEECCCCCCCCCEEEEEEEeccCCC-----ceEEEE
Confidence            4689999999999876556789999999887   489    999999998  45579999999987543     999999


Q ss_pred             EEEEEEeCCCCceeeEeecCCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEecCC
Q 047807           85 YRLFVYDQIRKDYLAVQDAKSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIKPT  153 (169)
Q Consensus        85 f~l~l~nq~~~~~~~~~~~~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~~~  153 (169)
                      |+|+|+||+++.......   ..+.|...+.+|||++||++++|+++.+|||+||+|+|+|+|+|++++
T Consensus        75 ~~~~l~n~~~~~~~~~~~---~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~  140 (146)
T d2cr2a1          75 FKFSILNAKGEETKAMES---QRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDS  140 (146)
T ss_dssp             CEEEEECTTSCEEEEEEC---SCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCS
T ss_pred             EEEEEEcCCCCcccceEe---cceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCC
Confidence            999999999876655432   333444457899999999999999888999999999999999999765

>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 3 (TRAF3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-30  Score=185.29  Aligned_cols=135  Identities=19%  Similarity=0.216  Sum_probs=106.9

Q ss_pred             CCeEEEEEcCccccccc----CCCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCCeE
Q 047807           10 PADYIFKIKSFNLLADS----TVDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAAWS   80 (169)
Q Consensus        10 ~~~~~w~I~nfs~l~~~----~~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~w~   80 (169)
                      +|+|+|+|+|||.+.+.    .+..++||.|.+|  ||+|    +|.+||+|+  +..+|+||||++.+++.. ..+ |+
T Consensus         2 ~g~f~W~I~nfs~~~~~~~~~~~~~~~S~~F~~~~~Gy~w----~l~~yp~G~~~~~~~~lSlyL~l~~~~~d~~~~-~~   76 (155)
T d1l0aa1           2 NGVLIWKIRDYKRRKQEAVMGKTLSLYSQPFYTGYFGYKM----CARVYLNGDGMGKGTHLSLFFVIMRGEYDALLP-WP   76 (155)
T ss_dssp             SSEEEEEEECHHHHHHHHHTTSCSEEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTTTTSC-SS
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCcEEECcCEEeCCCCcEE----EEEEEeCCCCCCCCCEEEEEEEEccCCcCcccC-Cc
Confidence            58999999999998653    1358999999998  9999    999999998  346899999999876432 233 99


Q ss_pred             EEEEEEEEEEeCCCCceeeEeec------CCceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEec
Q 047807           81 VNVCYRLFVYDQIRKDYLAVQDA------KSGVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVIK  151 (169)
Q Consensus        81 ~~~~f~l~l~nq~~~~~~~~~~~------~~~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~~  151 (169)
                      +.++|+|+|+||.++........      ....+.+...+.+|||++||++++|+  ++|||+||+|+|+|+|.+.+
T Consensus        77 ~~~~~~~~l~~q~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~G~~~fi~~~~L~--~~gfl~dD~l~I~~~V~~~~  151 (155)
T d1l0aa1          77 FKQKVTLMLMDQGSSRRHLGDAFKPDPNSSSFKKPTGEMNIASGCPVFVAQTVLE--NGTYIKDDTIFIKVIVDTSD  151 (155)
T ss_dssp             CCCCEEEEECCCSSSCCCEEEEECCCTTSTTSSCCSSSBCCCEEEEEEEEHHHHH--TTTTCBTTEEEEEEEECCSS
T ss_pred             EEEEEEEEEecCCCCccceeEEEeeccccccccccccccccCcChhheeEHHHhh--hCCCEECCEEEEEEEEEeCC
Confidence            99999999999988765432210      01123344456789999999999998  68999999999999986543

>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 2 (TRAF2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2e-30  Score=186.05  Aligned_cols=135  Identities=19%  Similarity=0.290  Sum_probs=105.9

Q ss_pred             CCeEEEEEcCccccccc----CCCcEEeCcEEEc--CeEeeeceEEEEeeCCC--CCCCeEEEEEEeccCCCC-CCCCeE
Q 047807           10 PADYIFKIKSFNLLADS----TVDGFESGVFESG--GYYWCVCTRLVFYPKGK--GSSDHLSLYLKIDESNSY-PNAAWS   80 (169)
Q Consensus        10 ~~~~~w~I~nfs~l~~~----~~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~--~~~~~lSvyL~~~~~~~~-~~~~w~   80 (169)
                      .|+|+|+|+|||.+++.    .++.++||.|.+|  ||+|    +|.+||+|+  +..+|+||||++.+.... +.. |+
T Consensus         2 ~g~f~W~I~nFs~l~~~~~~~~~~~~~Sp~F~~g~~Gy~w----~l~~yP~G~~~~~~~~lSlyL~l~~~~~d~~~~-~~   76 (152)
T d1czya1           2 DGVFIWKISDFPRKRQEAVAGRIPAIFSPAFYTSRYGYKM----CLRIYLNGDGTGRGTHLSLFFVVMKGPNDALLR-WP   76 (152)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTSCCCEECCCEESSTTSCEE----EEEEETTCCGGGTTTEEEEEEEEECCTTGGGSC-SS
T ss_pred             CCEEEEEECCcHHHHHhhhcCCCceEECcCEEcCCCCeEE----EEEEEeCCCCCCCCCEEEEEEEEccCCcCcccc-cc
Confidence            58999999999998753    1357999999998  9999    999999998  356899999999876432 223 99


Q ss_pred             EEEEEEEEEEeCCCCceeeEeec-CCceee----ecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEEEe
Q 047807           81 VNVCYRLFVYDQIRKDYLAVQDA-KSGVRT----FDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIYVI  150 (169)
Q Consensus        81 ~~~~f~l~l~nq~~~~~~~~~~~-~~~~~~----F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~v~  150 (169)
                      +.++|+|+|+||.++........ ......    +...+.+|||.+||++++|+ +++|||+||+|+|+|+|.|.
T Consensus        77 ~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~G~~~fi~~~~L~-~~~gfl~dD~l~I~~~V~v~  150 (152)
T d1czya1          77 FNQKVTLMLLDQNNREHVIDAFRPDVTSSSFQRPVNDMNIASGCPLFCPVSKME-AKNSYVRDDAIFIKAIVDLT  150 (152)
T ss_dssp             CCCCEEEEECCTTSSCCEEEEECCCTTSGGGSCCSSSBCCCEEEEEEEETCCCC-CSTTTSCSSCEEEEEEECCT
T ss_pred             eeeEEEEEEEcCCCCccceeeeccccccccccCCCcccccccchhhEEEHHHhc-ccCCcEeCCEEEEEEEEEec
Confidence            99999999999988764432110 011122    33346789999999999996 45799999999999999764

>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: TNF receptor associated factor 6 (TRAF6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.6e-29  Score=178.18  Aligned_cols=134  Identities=19%  Similarity=0.275  Sum_probs=104.9

Q ss_pred             CCCCeEEEEEcCccccccc----CCCcEEeCcEEEc--CeEeeeceEEEEeeCCCC---CCCeEEEEEEeccCCC-CCCC
Q 047807            8 LPPADYIFKIKSFNLLADS----TVDGFESGVFESG--GYYWCVCTRLVFYPKGKG---SSDHLSLYLKIDESNS-YPNA   77 (169)
Q Consensus         8 ~~~~~~~w~I~nfs~l~~~----~~~~~~S~~f~~g--G~~W~~~~~l~~yP~g~~---~~~~lSvyL~~~~~~~-~~~~   77 (169)
                      ...|+|+|+|+|||.+++.    .+..++||.|.+|  ||+|    +|.+||+|..   ..+|+|+||.+.++.. ...+
T Consensus         2 ~~~G~f~W~I~nfs~~~~~~~~~~~~~i~Sp~F~~g~~Gy~w----rl~~yp~g~~~~~~~~~lsvyL~l~~~~~d~~~~   77 (155)
T d1lb6a_           2 QCNGIYIWKIGNFGMHLKCQEEEKPVVIHSPGFYTGKPGYKL----CMRLHLQLPTAQRCANYISLFVHTMQGEYDSHLP   77 (155)
T ss_dssp             CCCEEEEEEECCHHHHHHHHHTTCCEEEECCCEESSSSCCEE----EEEEEECCTTCTTTTTEEEEEEEEECCTTGGGSC
T ss_pred             ccccEEEEEECChHHHHHhhhcCCCcEEECcCEEeCCCCcEE----EEEEEeCCCCCCCCCCEEEEEEEEecCcccccCC
Confidence            4579999999999998653    1357999999998  9999    9999999972   3579999999987643 1223


Q ss_pred             CeEEEEEEEEEEEeCCCCceeeEee----cCC-----ceeeecCCCCCcCccccccchhhccCCCCeEeCCEEEEEEEEE
Q 047807           78 AWSVNVCYRLFVYDQIRKDYLAVQD----AKS-----GVRTFDQQTSELGFDKFLTLAELNQHLKGYLLNNTCTFGAEIY  148 (169)
Q Consensus        78 ~w~~~~~f~l~l~nq~~~~~~~~~~----~~~-----~~~~F~~~~~~~G~~~fi~~~~L~~~~~~fl~~D~l~i~~~V~  148 (169)
                       |++.++++|+|+||++........    ...     ..+.|...+.+|||++||++++|+  ++|||+||+|+|+|+|+
T Consensus        78 -~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~L~--~~gyl~dD~l~I~~~V~  154 (155)
T d1lb6a_          78 -WPFQGTIRLTILDQSEAPVRQNHEEIMDAKPELLAFQRPTIPRNPKGFGYVTFMHLEALR--QRTFIKDDTLLVRCEVS  154 (155)
T ss_dssp             -SSCCSEEEEEECCCSCTTSCCCEEEEEECCTTSGGGSCCSSSBCSEEEEEEEEEEGGGGG--TSCCCBTTBEEEEEEEE
T ss_pred             -CcEEEEEEEEEECCCCCccceeeEEeeecCCccccccCCcccCCcCCcChHHeeEHHHhc--cCCCEECCEEEEEEEEE
Confidence             999999999999998875432110    000     112344456789999999999998  68999999999999986