Citrus Sinensis ID: 047816

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620
MARASIPLLTTIVAFVYVIQSNPATSTATILHGRTRPAMVLPLYLSQPNISRSISISRRHLQRSHLNSHPNARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNCSELWERLHITGALSPIPSSSEGKNSSTDLSPSEPPNYVLPGDLQIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFILRRRRQSVNSYKP
ccccHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccEEEEEEEEcccccEEEEEEEccccccEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEccccEEEEEEEEEEEEEccccccccccEEEEcccccccccccccccEEEEccccccHHHHHHHHcccccccEEEEcccccccccEEEEcccccccccEEEEccccccccEEEEEEEEEEccEEEccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEEccccEEEEccccEEEEEcccccEEEEEEEEcccccEEEEEcEEEEEEEEEEEccccEEEEEccccccHHHcccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccccccccHHHHHHHHHHHcccccccEEEEEcccccccEEEEEEEEccccccccHHHHHHHHHHHHHccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEcccccccccc
cHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHcccHHHHccHHHHcccccccccccccccccccHHccccEEEEEEEEccccEEEEEEEEcccccEEEEcccccccHHHccccccccccccEEccccEEEEcccccccccEEEEEEcccccEEEEEEEEEEEEccccccEEcccEEEEEEcccccEEEcccccEEccccccccHHHHHHHcccccccEEEEEccccccccEEEEccccccccEEEEEEEEccccEEEEEEEEEEEccEEEEcccHHcccccEEEEEccccEccccHHHHHHHHHHHcccccccccccccccccccccEccEEEEEcccccccccEEEEEEccEEccccHHHHEEEEcccccEEEEcccccccccEEEEccEEEEEEEEEEEcccccEEEccccHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEEccccccccHHHHHHHHHHHccccccEEEEEEEEccccccEEEEEEcccccccHccHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
MARASIPLLTTIVAFVYVIqsnpatstatilhgrtrpamvlplylsqpnisrsiSISRRHLQRshlnshpnarMRLYDDLLlngyyttrlwigtppqtFALIVDtgstvtyvpcatcehcgdhqdpkfepdlsstyqpvkcnlycncdreRAQCVYerkyaemssssgvlgediisfgnesdlkpqravfgcenvetgdlysqhadgiiglgrgdLSVVDQLVEKGVISDSFSlcyggmdvgggamvlggisppkdmvfthsdpvrspyynidlkvihvagkplplnpkvfdgkhgtvldsgttyaylPEAAFLAFKDAIMSELQSLkqirgpdpnyndicfsgapsdvsqlsdtfpAVEMAFGNgqklllapenylfrhskvrgayclgifqngrdpttllggiiVRNTLVMydrehskigfwKTNCSELWERLHItgalspipsssegknsstdlspseppnyvlpgdlqigritfdmflsinysdlrphipeLADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAvfpsgsanyisNATALRIISRLAEhrvhipdtfgnykllqwniepqvkrtWWQEHFLMVVLAITIMMVVGLSVFGILFILRRRrqsvnsykp
MARASIPLLTTIVAFVYVIQSNpatstatilhgRTRPAMVLPLYLSQPNISRSISISRRHLQrshlnshpnaRMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAemssssgvlGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFqngrdpttllGGIIVRNTLVMYDREHSKIGFWKTNCSELWERLHITGALSPIPSSSEGKNSSTDLSPSEPPNYVLPGDLQIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFIlrrrrqsvnsykp
MARASIPLLTTIVAFVYVIQSNPATSTATILHGRTRPAMVLPLYLSQPNisrsisisrrHLQRSHLNSHPNARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNCSELWERLHITGALSPIPSSSEGKNSSTDLSPSEPPNYVLPGDLQIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFILRRRRQSVNSYKP
*****IPLLTTIVAFVYVIQSNPATSTATILHGRTRPAMVLPLYLSQPNI*********************ARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEM****GVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNCSELWERLHITGAL***********************YVLPGDLQIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFILRR**********
***ASIPLLTTIVAFVYVIQSNPATSTATI*************************************************LLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKC*********RAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQ*********PNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNC*******************************************QIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFILRRRR********
MARASIPLLTTIVAFVYVIQSNPATSTATILHGRTRPAMVLPLYLSQPNISRSISISRRHLQRSHLNSHPNARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERK********GVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNCSELWERLHITGALSP*****************EPPNYVLPGDLQIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFILRRRR********
*ARASIPLLTTIVAFVYVIQSNPATSTATILHGRTRPAMVLPLYLSQPNISRSISISRRH**********NARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNCSELWERLHIT***************************VLPGDLQIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFILRRRRQS******
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
iiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
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MARASIPLLTTIVAFVYVIQSNPATSTATILHGRTRPAMVLPLYLSQPNISRSISISRRHLQRSHLNSHPNARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNCSELWERLHITGALSPIPSSSEGKNSSTDLSPSEPPNYVLPGDLQIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFILRRRRQSVNSYKP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query620 2.2.26 [Sep-21-2011]
Q9S9K4475 Aspartic proteinase-like no no 0.574 0.749 0.294 6e-31
Q766C3437 Aspartic proteinase nepen N/A no 0.567 0.805 0.291 2e-29
Q766C2438 Aspartic proteinase nepen N/A no 0.635 0.899 0.280 9e-29
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.525 0.652 0.276 2e-22
Q9LX20528 Aspartic proteinase-like no no 0.512 0.602 0.250 3e-22
Q0IU52410 Aspartic proteinase Asp1 no no 0.561 0.848 0.260 2e-21
A2ZC67410 Aspartic proteinase Asp1 N/A no 0.558 0.843 0.248 2e-20
Q9LHE3470 Protein ASPARTIC PROTEASE no no 0.529 0.697 0.285 3e-19
Q9LZL3453 Aspartic proteinase PCS1 no no 0.522 0.715 0.254 1e-18
Q3EBM5447 Probable aspartic proteas no no 0.646 0.897 0.265 1e-18
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function desciption
 Score =  136 bits (342), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/407 (29%), Positives = 191/407 (46%), Gaps = 51/407 (12%)

Query: 58  RRHLQRSHLNSHP---NARMRLYDDLLLNG--------YYTTRLWIGTPPQTFALIVDTG 106
           +++L+  H  SH    ++RM    DL L G         Y T++ +G+PP+ + + VDTG
Sbjct: 37  KKNLE--HFKSHDTRRHSRMLASIDLPLGGDSRVDSVGLYFTKIKLGSPPKEYHVQVDTG 94

Query: 107 STVTYVPCATCEHCGDHQDPKFEPDL-----SSTYQPVKC-NLYCN--CDRERAQ----C 154
           S + ++ C  C  C    +  F   L     SST + V C + +C+     +  Q    C
Sbjct: 95  SDILWINCKPCPKCPTKTNLNFRLSLFDMNASSTSKKVGCDDDFCSFISQSDSCQPALGC 154

Query: 155 VYERKYAEMSSSSGVLGEDIISFGN-ESDLKP----QRAVFGCENVETGDLYSQHA--DG 207
            Y   YA+ S+S G    D+++      DLK     Q  VFGC + ++G L +  +  DG
Sbjct: 155 SYHIVYADESTSDGKFIRDMLTLEQVTGDLKTGPLGQEVVFGCGSDQSGQLGNGDSAVDG 214

Query: 208 IIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRS 267
           ++G G+ + SV+ QL   G     FS C   +  GGG   +G +  PK  V T       
Sbjct: 215 VMGFGQSNTSVLSQLAATGDAKRVFSHCLDNVK-GGGIFAVGVVDSPK--VKTTPMVPNQ 271

Query: 268 PYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSL 327
            +YN+ L  + V G  L L P+      GT++DSGTT AY P+  +    D+++  + + 
Sbjct: 272 MHYNVMLMGMDVDGTSLDL-PRSIVRNGGTIVDSGTTLAYFPKVLY----DSLIETILAR 326

Query: 328 KQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAY 387
           + ++         CFS +    + + + FP V   F +  KL + P +YLF   +    Y
Sbjct: 327 QPVKLHIVEETFQCFSFS----TNVDEAFPPVSFEFEDSVKLTVYPHDYLFTLEE--ELY 380

Query: 388 CLGIFQNG-----RDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNCS 429
           C G    G     R    LLG +++ N LV+YD ++  IG+   NCS
Sbjct: 381 CFGWQAGGLTTDERSEVILLGDLVLSNKLVVYDLDNEVIGWADHNCS 427

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q9LHE3|ASPG2_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 2 OS=Arabidopsis thaliana GN=ASPG2 PE=2 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q3EBM5|ASPR1_ARATH Probable aspartic protease At2g35615 OS=Arabidopsis thaliana GN=At2g35615 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query620
356565521634 PREDICTED: aspartic proteinase-like prot 0.990 0.968 0.692 0.0
356514298663 PREDICTED: aspartic proteinase-like prot 0.948 0.886 0.717 0.0
357482719640 Aspartic proteinase-like protein [Medica 0.945 0.915 0.698 0.0
224081804564 predicted protein [Populus trichocarpa] 0.882 0.969 0.754 0.0
225458774659 PREDICTED: aspartic proteinase-like prot 0.974 0.916 0.652 0.0
356541713640 PREDICTED: aspartic proteinase-like prot 0.945 0.915 0.697 0.0
357476337683 Aspartic proteinase nepenthesin-1 [Medic 0.877 0.796 0.728 0.0
356495496645 PREDICTED: aspartic proteinase nepenthes 0.95 0.913 0.685 0.0
296087361633 unnamed protein product [Vitis vinifera] 0.930 0.911 0.684 0.0
225438908634 PREDICTED: aspartic proteinase-like prot 0.930 0.910 0.684 0.0
>gi|356565521|ref|XP_003550988.1| PREDICTED: aspartic proteinase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 434/627 (69%), Positives = 503/627 (80%), Gaps = 13/627 (2%)

Query: 1   MARASIPLLTTIVAFVYVIQSNPATSTATILHGR---TRPAMVLPLYLSQPNISRSISIS 57
           MARA    L+ I+  +  +  +     A +L  R   +RPAM+LPLYLS PN S S    
Sbjct: 1   MARALTHHLSLILILIVAVAGD-----ANLLRNRHHGSRPAMLLPLYLSAPNSSTSALDP 55

Query: 58  RRHLQRSHLNSHPNARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATC 117
           RR L  S    HPNARMRL+DDLLLNGYYTTRLWIGTPPQ FALIVDTGSTVTYVPC+TC
Sbjct: 56  RRQLTGSESKRHPNARMRLHDDLLLNGYYTTRLWIGTPPQMFALIVDTGSTVTYVPCSTC 115

Query: 118 EHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISF 177
           E CG HQDPKF+P+ SSTYQPVKC + CNCD +R QCVYER+YAEMS+SSGVLGED+ISF
Sbjct: 116 EQCGRHQDPKFQPESSSTYQPVKCTIDCNCDSDRMQCVYERQYAEMSTSSGVLGEDLISF 175

Query: 178 GNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYG 237
           GN+S+L PQRAVFGCENVETGDLYSQHADGI+GLGRGDLS++DQLV+K VISDSFSLCYG
Sbjct: 176 GNQSELAPQRAVFGCENVETGDLYSQHADGIMGLGRGDLSIMDQLVDKNVISDSFSLCYG 235

Query: 238 GMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGT 297
           GMDVGGGAMVLGGISPP DM F +SDPVRSPYYNIDLK IHVAGK LPLN  VFDGKHGT
Sbjct: 236 GMDVGGGAMVLGGISPPSDMAFAYSDPVRSPYYNIDLKEIHVAGKRLPLNANVFDGKHGT 295

Query: 298 VLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFP 357
           VLDSGTTYAYLPEAAFLAFKDAI+ ELQSLK+I GPDPNYNDICFSGA  DVSQLS +FP
Sbjct: 296 VLDSGTTYAYLPEAAFLAFKDAIVKELQSLKKISGPDPNYNDICFSGAGIDVSQLSKSFP 355

Query: 358 AVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDRE 417
            V+M F NGQK  L+PENY+FRHSKVRGAYCLG+FQNG D TTLLGGIIVRNTLV+YDRE
Sbjct: 356 VVDMVFENGQKYTLSPENYMFRHSKVRGAYCLGVFQNGNDQTTLLGGIIVRNTLVVYDRE 415

Query: 418 HSKIGFWKTNCSELWERLHITGALSPIPSSSEGKNSSTDLSPSEPPNY----VLPGDLQI 473
            +KIGFWKTNC+ELWERL I+ A  P+P +S  +NSS  L PS  P+       PG+L+I
Sbjct: 416 QTKIGFWKTNCAELWERLQISVAPPPLPPNSGVRNSSEALEPSVAPSVSQHNARPGELKI 475

Query: 474 GRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHLLNFMSKGNNSFIAWAVFPSG 533
            +IT  +  +I+Y D++PHI ELA   A  L+VNTSQVHLLNF S GN+S   WA+ P  
Sbjct: 476 VQITMVISFNISYVDMKPHIKELAGLFAHGLNVNTSQVHLLNFTSTGNDSLSKWAITPKP 535

Query: 534 SANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEPQVKRTWWQEHFLMVVLAITI 593
            ++YISN TA+ II+RLAEHR+ +P TFGNYKL+ W++EP  K  WWQ+HFL+V LAI I
Sbjct: 536 DSHYISNTTAMNIIARLAEHRIQLPGTFGNYKLIDWSVEPPSK-NWWQQHFLVVSLAILI 594

Query: 594 MMVVGLSVFGILFILRRRRQSVNSYKP 620
            +++GLS+ G   I ++R+QS +SYKP
Sbjct: 595 TLLLGLSILGTFLIWKKRQQSSHSYKP 621

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356514298|ref|XP_003525843.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|357482719|ref|XP_003611646.1| Aspartic proteinase-like protein [Medicago truncatula] gi|355512981|gb|AES94604.1| Aspartic proteinase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224081804|ref|XP_002306494.1| predicted protein [Populus trichocarpa] gi|222855943|gb|EEE93490.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225458774|ref|XP_002283258.1| PREDICTED: aspartic proteinase-like protein 2 [Vitis vinifera] gi|302142232|emb|CBI19435.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356541713|ref|XP_003539318.1| PREDICTED: aspartic proteinase-like protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|357476337|ref|XP_003608454.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] gi|355509509|gb|AES90651.1| Aspartic proteinase nepenthesin-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356495496|ref|XP_003516613.1| PREDICTED: aspartic proteinase nepenthesin-2-like [Glycine max] Back     alignment and taxonomy information
>gi|296087361|emb|CBI33735.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225438908|ref|XP_002279194.1| PREDICTED: aspartic proteinase-like protein 2-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query620
TAIR|locus:2167776631 AT5G43100 [Arabidopsis thalian 0.929 0.912 0.628 3.2e-200
TAIR|locus:2083098632 AT3G50050 [Arabidopsis thalian 0.977 0.958 0.594 1.1e-195
TAIR|locus:2172661493 AT5G22850 [Arabidopsis thalian 0.525 0.661 0.322 2.9e-53
TAIR|locus:2200023492 AT1G08210 [Arabidopsis thalian 0.472 0.595 0.353 1.2e-39
TAIR|locus:2040545512 AT2G36670 [Arabidopsis thalian 0.501 0.607 0.346 8.4e-39
TAIR|locus:2198753485 AT1G05840 [Arabidopsis thalian 0.533 0.682 0.315 3.2e-38
TAIR|locus:2057831396 AT2G28010 [Arabidopsis thalian 0.522 0.818 0.283 1.1e-31
TAIR|locus:2035297485 AT1G01300 [Arabidopsis thalian 0.532 0.680 0.282 1.5e-29
TAIR|locus:2010786431 AT1G64830 [Arabidopsis thalian 0.562 0.809 0.276 8.2e-29
TAIR|locus:2095365470 AT3G20015 [Arabidopsis thalian 0.524 0.691 0.299 1.2e-28
TAIR|locus:2167776 AT5G43100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1938 (687.3 bits), Expect = 3.2e-200, P = 3.2e-200
 Identities = 369/587 (62%), Positives = 447/587 (76%)

Query:    39 MVLPL-YLSQPNXXXXXXXXXXHLQRSHLNSHPNARMRLYDDLLLNGYYTTRLWIGTPPQ 97
             M+ PL Y S P            L +S L   PNA M+LYDDLL NGYYTTRLWIGTPPQ
Sbjct:    31 MIFPLSYSSLPPRPRVEDFRRRRLHQSQL---PNAHMKLYDDLLSNGYYTTRLWIGTPPQ 87

Query:    98 TFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQCVYE 157
              FALIVDTGSTVTYVPC+TC+ CG HQDPKF+P+LS++YQ +KCN  CNCD E   CVYE
Sbjct:    88 EFALIVDTGSTVTYVPCSTCKQCGKHQDPKFQPELSTSYQALKCNPDCNCDDEGKLCVYE 147

Query:   158 RKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLS 217
             R+YAEMSSSSGVL ED+ISFGNES L PQRAVFGCEN ETGDL+SQ ADGI+GLGRG LS
Sbjct:   148 RRYAEMSSSSGVLSEDLISFGNESQLSPQRAVFGCENEETGDLFSQRADGIMGLGRGKLS 207

Query:   218 VVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPKDMVFTHSDPVRSPYYNIDLKVI 277
             VVDQLV+KGVI D FSLCYGGM+VGGGAMVLG ISPP  MVF+HSDP RSPYYNIDLK +
Sbjct:   208 VVDQLVDKGVIEDVFSLCYGGMEVGGGAMVLGKISPPPGMVFSHSDPFRSPYYNIDLKQM 267

Query:   278 HVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNY 337
             HVAGK L LNPKVF+GKHGTVLDSGTTYAY P+ AF+A KDA++ E+ SLK+I GPDPNY
Sbjct:   268 HVAGKSLKLNPKVFNGKHGTVLDSGTTYAYFPKEAFIAIKDAVIKEIPSLKRIHGPDPNY 327

Query:   338 NDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRD 397
             +D+CFSGA  DV+++ + FP + M FGNGQKL+L+PENYLFRH+KVRGAYCLGIF + RD
Sbjct:   328 DDVCFSGAGRDVAEIHNFFPEIAMEFGNGQKLILSPENYLFRHTKVRGAYCLGIFPD-RD 386

Query:   398 PTTLLGGIIVRNTLVMYDREHSKIGFWKTNCSELWERLHITGALSPIPSSSEGKNSSTDL 457
              TTLLGGI+VRNTLV YDRE+ K+GF KTNCS++W RL      SP P+S   +N S+++
Sbjct:   387 STTLLGGIVVRNTLVTYDRENDKLGFLKTNCSDIWRRL--AAPESPAPTSPISQNKSSNI 444

Query:   458 SPS----EPPNYVLPGDLQIGRITFDMFLSINYSDLRPHIPELADSIAQELDVNTSQVHL 513
             SPS    E P   LPG  ++G ITF++ +S+N S L+P   E+AD IA ELD+ ++QV L
Sbjct:   445 SPSPATSESPTSHLPGVFRVGVITFEVSISVNNSSLKPKFSEIADFIAHELDIQSAQVRL 504

Query:   514 LNFMSKGNNSFIAWAVFPSGSANYISNATALRIISRLAEHRVHIPDTFGNYKLLQWNIEP 573
             LNF S GN   + W VFP  S+ YISN TAL I+  L E+R+ +P  FG+YKLL+W  E 
Sbjct:   505 LNFSSSGNEYRLKWGVFPPQSSEYISNTTALNIMLLLKENRLRLPGQFGSYKLLEWKAEQ 564

Query:   574 QVKRTWWQEHFLMVVLAITIMMVVGLSVFGILFILRRRRQSVNSYKP 620
             + K++WW++H L VV    I ++V   +  +  + RRR+Q   +Y+P
Sbjct:   565 KKKQSWWEKHLLGVVGGAMISLLVTSVMIKLALVWRRRKQEEATYEP 611
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2083098 AT3G50050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2172661 AT5G22850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200023 AT1G08210 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040545 AT2G36670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057831 AT2G28010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035297 AT1G01300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010786 AT1G64830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095365 AT3G20015 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_V0234
hypothetical protein (565 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 1e-76
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-52
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 1e-44
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 8e-40
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 3e-35
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 5e-31
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-28
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 3e-20
cd05473364 cd05473, beta_secretase_like, Beta-secretase, aspa 3e-20
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 4e-16
cd05486316 cd05486, Cathespin_E, Cathepsin E, non-lysosomal a 9e-15
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 2e-14
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 6e-14
cd05487326 cd05487, renin_like, Renin stimulates production o 1e-13
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 2e-13
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 1e-12
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 2e-12
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 3e-12
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 5e-12
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 1e-11
PTZ00013450 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisiona 7e-09
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 6e-08
PTZ00147453 PTZ00147, PTZ00147, plasmepsin-1; Provisional 8e-07
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information 
 Score =  244 bits (625), Expect = 1e-76
 Identities = 111/354 (31%), Positives = 147/354 (41%), Gaps = 99/354 (27%)

Query: 85  YYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLY 144
            Y   L IGTPPQ F+LIVDTGS +T+  C                              
Sbjct: 1   EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC------------------------------ 30

Query: 145 CNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLYSQH 204
                    C YE  Y + SS+SGVL  +  +FG+ S +      FGC     G      
Sbjct: 31  ---------CSYEYSYGDGSSTSGVLATETFTFGD-SSVSVPNVAFGCGTDNEGG-SFGG 79

Query: 205 ADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMD--VGGGAMVLGGISPPK--DMVFT 260
           ADGI+GLGRG LS+V QL   G   + FS C    D   G   ++LG  +      +V+T
Sbjct: 80  ADGILGLGRGPLSLVSQL---GSTGNKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYT 136

Query: 261 --HSDPVRSPYYNIDLKVIHVAGKPLPLNPKVF----DGKHGTVLDSGTTYAYLPEAAFL 314
               +P    YY ++L+ I V GK LP+ P VF    DG  GT++DSGTT  YLP+ A  
Sbjct: 137 PLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA-- 194

Query: 315 AFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPE 374
                                                    +P + + F  G  L L PE
Sbjct: 195 -----------------------------------------YPDLTLHFDGGADLELPPE 213

Query: 375 NYLFRHSKVRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNC 428
           NY        G  CL I  +     ++LG I  +N LV YD E+S++GF   +C
Sbjct: 214 NYFVDVG--EGVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which have at least six residues in length with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. Length = 265
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133140 cd05473, beta_secretase_like, Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133153 cd05486, Cathespin_E, Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|140051 PTZ00013, PTZ00013, plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|140176 PTZ00147, PTZ00147, plasmepsin-1; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 620
PLN03146431 aspartyl protease family protein; Provisional 100.0
PTZ00165482 aspartyl protease; Provisional 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 99.93
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.87
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.85
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.9
PF01102122 Glycophorin_A: Glycophorin A; InterPro: IPR001195 96.58
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 96.49
PF1365090 Asp_protease_2: Aspartyl protease 95.88
PTZ0038296 Variant-specific surface protein (VSP); Provisiona 95.45
PF0103464 Syndecan: Syndecan domain; InterPro: IPR001050 The 95.17
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.22
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 94.15
PF04478154 Mid2: Mid2 like cell wall stress sensor; InterPro: 93.22
PF03302397 VSP: Giardia variant-specific surface protein; Int 92.59
PF01299306 Lamp: Lysosome-associated membrane glycoprotein (L 91.54
TIGR01478295 STEVOR variant surface antigen, stevor family. Thi 90.52
PF02009299 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR00 89.19
PF05454 290 DAG1: Dystroglycan (Dystrophin-associated glycopro 88.78
PF0869340 SKG6: Transmembrane alpha-helix domain; InterPro: 88.6
PF0243938 Adeno_E3_CR2: Adenovirus E3 region protein CR2; In 88.36
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 87.98
cd0609586 RP_RTVL_H_like Retropepsin of the RTVL_H family of 87.6
PTZ00370296 STEVOR; Provisional 87.45
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 86.89
PHA03286492 envelope glycoprotein E; Provisional 85.75
TIGR03698107 clan_AA_DTGF clan AA aspartic protease, AF_0612 fa 85.45
PF08284135 RVP_2: Retroviral aspartyl protease; InterPro: IPR 84.58
COG3577215 Predicted aspartyl protease [General function pred 83.78
PF05808162 Podoplanin: Podoplanin; InterPro: IPR008783 This f 83.68
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 82.7
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 81.45
PTZ00046358 rifin; Provisional 80.45
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-52  Score=451.69  Aligned_cols=333  Identities=28%  Similarity=0.537  Sum_probs=269.7

Q ss_pred             ccceeEEEEEEecCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccccCcCC-cc-------cCCCCC
Q 047816           81 LLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLY-CN-------CDRERA  152 (620)
Q Consensus        81 ~~~~~Y~~~i~iGTP~Q~~~v~vDTGSs~~WV~~~~c~~C~~~~~~~y~p~~SsT~~~~~c~~~-c~-------c~~~~~  152 (620)
                      .++++|+++|.||||+|++.|++||||+++||+|.+|..|..+.++.|||++|+||+.+.|.+. |.       |... +
T Consensus        80 ~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~-~  158 (431)
T PLN03146         80 SNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE-N  158 (431)
T ss_pred             cCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC-C
Confidence            3567899999999999999999999999999999999999887778999999999999999864 74       5433 4


Q ss_pred             cceeEEeeccCCceeEEEEEEEEEeCCCC--CCCccceEEEEEEeccCCCcCCCcceEEecCCCCCchHHHHHHcCCccc
Q 047816          153 QCVYERKYAEMSSSSGVLGEDIISFGNES--DLKPQRAVFGCENVETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISD  230 (620)
Q Consensus       153 ~~~~~~~Y~dg~~~~G~~~~D~v~lg~~~--~~~~~~~~fg~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~L~~~g~I~~  230 (620)
                      .|.|.+.|+||+.+.|.+++|+|+|++..  ..++.++.|||+....+.+. ...+||||||++..|++.||..+  +.+
T Consensus       159 ~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~-~~~~GilGLG~~~~Sl~sql~~~--~~~  235 (431)
T PLN03146        159 TCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFD-EKGSGIVGLGGGPLSLISQLGSS--IGG  235 (431)
T ss_pred             CCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCcc-CCCceeEecCCCCccHHHHhhHh--hCC
Confidence            69999999998888999999999998743  14578999999988766543 35799999999999999999763  557


Q ss_pred             ceEEeecCCC---CCCceEEECCCCCCC--CceEeecCCC-CCCeeEEEEeEEEEccEEecCCCCcc--CCCCceEeecc
Q 047816          231 SFSLCYGGMD---VGGGAMVLGGISPPK--DMVFTHSDPV-RSPYYNIDLKVIHVAGKPLPLNPKVF--DGKHGTVLDSG  302 (620)
Q Consensus       231 ~FSl~l~~~~---~~~G~l~fGgiD~~~--~~~~~~~~~~-~~~~w~v~l~~i~v~g~~~~~~~~~~--~~~~~ailDSG  302 (620)
                      .||+||.+..   ...|.|+||+...-.  .+.+++.... ...+|.|.|++|+|+++.+.++...+  .+...+|||||
T Consensus       236 ~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSG  315 (431)
T PLN03146        236 KFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSG  315 (431)
T ss_pred             cEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCC
Confidence            9999996422   347999999953221  2456654422 35789999999999999988766544  23457999999


Q ss_pred             ceeeeecHHHHHHHHHHHHHHhhhcccccCCCCCCccccccCCCCCccccCCCCCeEEEEECCCcEEEeCCCCcEEEecc
Q 047816          303 TTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSK  382 (620)
Q Consensus       303 tt~~~LP~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~yi~~~~~  382 (620)
                      |++++||+++|+++.+++.+++.... .. ......+.||....      ...+|+|+|+| +|.++.|++++|++....
T Consensus       316 Tt~t~Lp~~~y~~l~~~~~~~~~~~~-~~-~~~~~~~~C~~~~~------~~~~P~i~~~F-~Ga~~~l~~~~~~~~~~~  386 (431)
T PLN03146        316 TTLTLLPSDFYSELESAVEEAIGGER-VS-DPQGLLSLCYSSTS------DIKLPIITAHF-TGADVKLQPLNTFVKVSE  386 (431)
T ss_pred             ccceecCHHHHHHHHHHHHHHhcccc-CC-CCCCCCCccccCCC------CCCCCeEEEEE-CCCeeecCcceeEEEcCC
Confidence            99999999999999999988875321 11 11234578986321      13689999999 689999999999987643


Q ss_pred             cCCeEEEEEEecCCCCceeehHhhhceEEEEEeCCCCEEEEEecCCcc
Q 047816          383 VRGAYCLGIFQNGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKTNCSE  430 (620)
Q Consensus       383 ~~~~~Cl~~~~~~~~~~~ILG~~fLr~~yvvfD~en~rIGfA~~~c~~  430 (620)
                        +..|+++...  .+.+|||+.|||++|++||++++|||||+++|+.
T Consensus       387 --~~~Cl~~~~~--~~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~  430 (431)
T PLN03146        387 --DLVCFAMIPT--SSIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK  430 (431)
T ss_pred             --CcEEEEEecC--CCceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence              5689988754  3469999999999999999999999999999975

>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>PTZ00382 Variant-specific surface protein (VSP); Provisional Back     alignment and domain information
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ] Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region Back     alignment and domain information
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein) Back     alignment and domain information
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear Back     alignment and domain information
>TIGR01478 STEVOR variant surface antigen, stevor family Back     alignment and domain information
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world Back     alignment and domain information
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5 Back     alignment and domain information
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ] Back     alignment and domain information
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host [] Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements Back     alignment and domain information
>PTZ00370 STEVOR; Provisional Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PHA03286 envelope glycoprotein E; Provisional Back     alignment and domain information
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family Back     alignment and domain information
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses) Back     alignment and domain information
>COG3577 Predicted aspartyl protease [General function prediction only] Back     alignment and domain information
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [] Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PTZ00046 rifin; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
2ewy_A383 Crystal Structure Of Human Bace2 In Complex With A 3e-17
1psa_A326 Structure Of A Pepsin(Slash)renin Inhibitor Complex 2e-16
5pep_A326 X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dim 3e-16
1f34_A326 Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bou 3e-16
3psg_A370 The High Resolution Crystal Structure Of Porcine Pe 3e-16
2psg_A370 Refined Structure Of Porcine Pepsinogen At 1.8 Angs 5e-16
3pep_A326 Revised 2.3 Angstroms Structure Of Porcine Pepsin. 9e-16
4pep_A326 The Molecular And Crystal Structures Of Monoclinic 1e-15
1flh_A326 Crystal Structure Of Human Uropepsin At 2.45 A Reso 4e-14
1pso_E326 The Crystal Structure Of Human Pepsin And Its Compl 4e-14
4aa9_A320 Camel Chymosin At 1.6a Resolution Length = 320 1e-13
3cms_A323 Engineering Enzyme Sub-Site Specificity: Preparatio 1e-13
1czi_E323 Chymosin Complex With The Inhibitor Cp-113972 Lengt 1e-13
3l58_A414 Structure Of Bace Bound To Sch589432 Length = 414 2e-13
3udh_A404 Crystal Structure Of Bace With Compound 1 Length = 2e-13
2hm1_A406 Crystal Structure Of Human Beta-Secretase (Bace) In 2e-13
4ewo_A386 Design And Synthesis Of Potent Hydroxyethylamine (H 2e-13
2fdp_A388 Crystal Structure Of Beta-Secretase Complexed With 2e-13
3cib_A390 Structure Of Bace Bound To Sch727596 Length = 390 2e-13
1fkn_A391 Structure Of Beta-Secretase Complexed With Inhibito 3e-13
4dpf_A391 Bace-1 In Complex With A Hea-Macrocyclic Type Inhib 3e-13
3dm6_A406 Beta-Secretase 1 Complexed With Statine-Based Inhib 3e-13
3ckp_A412 Crystal Structure Of Bace-1 In Complex With Inhibit 3e-13
1w50_A411 Apo Structure Of Bace (beta Secretase) Length = 411 3e-13
3hvg_A411 Structure Of Bace (Beta Secretase) In Complex With 3e-13
2zjn_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 3e-13
1sgz_A389 Crystal Structure Of Unbound Beta-Secretase Catalyt 3e-13
2qu2_A415 Bace1 With Compound 1 Length = 415 3e-13
2wjo_A412 Human Bace (Beta Secretase) In Complex With Cyclohe 3e-13
4b1d_A388 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 3e-13
2qk5_A395 Structure Of Bace1 Bound To Sch626485 Length = 395 3e-13
3u6a_A390 Rational Design And Synthesis Of Aminopiperazinones 3e-13
1tqf_A405 Crystal Structure Of Human Beta Secretase Complexed 3e-13
3vv6_A416 Crystal Structure Of Beta Secetase In Complex With 3e-13
2qzl_A411 Crystal Structure Of Human Beta Secretase Complexed 3e-13
3exo_A413 Crystal Structure Of Bace1 Bound To Inhibitor Lengt 3e-13
3ixk_A405 Potent Beta-Secretase 1 Inhibitor Length = 405 3e-13
3kmx_A395 Structure Of Bace Bound To Sch346572 Length = 395 3e-13
2zhr_A411 Crystal Structure Of Bace1 In Complex With Om99-2 A 3e-13
1ym2_A402 Crystal Structure Of Human Beta Secretase Complexed 3e-13
3r1g_B402 Structure Basis Of Allosteric Inhibition Of Bace1 B 3e-13
3qi1_A408 Design And Synthesis Of Hydroxyethylamine (Hea) Bac 3e-13
2of0_A402 X-Ray Crystal Structure Of Beta Secretase Complexed 4e-13
3bra_A409 Bace-1 Complexed With Compound 1 Length = 409 4e-13
1ym4_A408 Crystal Structure Of Human Beta Secretase Complexed 4e-13
2hiz_A455 Crystal Structure Of Human Beta-Secretase (Bace) In 4e-13
3tpj_A433 Apo Structure Of Bace1 Length = 433 4e-13
3tpr_A433 Crystal Structure Of Bace1 Complexed With An Inhibi 5e-13
3lpi_A455 Structure Of Bace Bound To Sch745132 Length = 455 5e-13
2va5_A455 X-Ray Crystal Structure Of Beta Secretase Complexed 5e-13
2vie_A392 Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2- 5e-13
2q11_A388 Structure Of Bace Complexed To Compound 1 Length = 5e-13
2zjk_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 5e-13
2zji_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 5e-13
2q15_A385 Structure Of Bace Complexed To Compound 3a Length = 5e-13
2zjh_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 6e-13
1am5_A324 The Crystal Structure And Proposed Amino Acid Seque 7e-13
2zjj_A405 Crystal Structure Of The Human Bace1 Catalytic Doma 2e-12
3vcm_A335 Crystal Structure Of Human Prorenin Length = 335 5e-12
2x0b_A383 Crystal Structure Of Human Angiotensinogen Complexe 2e-11
1htr_B329 Crystal And Molecular Structures Of Human Progastri 7e-11
3d91_A341 Human Renin In Complex With Remikiren Length = 341 8e-11
2i4q_A336 Human ReninPF02342674 COMPLEX Length = 336 9e-11
2g24_A333 Ketopiperazine-Based Renin Inhibitors: Optimization 1e-10
2bks_A340 Crystal Structure Of Renin-Pf00074777 Complex Lengt 1e-10
1hrn_A337 High Resolution Crystal Structures Of Recombinant H 1e-10
1dp5_A329 The Structure Of Proteinase A Complexed With A Ia3 1e-09
1g0v_A329 The Structure Of Proteinase A Complexed With A Ia3 1e-09
2jxr_A329 Structure Of Yeast Proteinase A Length = 329 2e-09
1smr_A335 The 3-D Structure Of Mouse Submaxillary Renin Compl 2e-09
1uh7_A325 Crystal Structure Of Rhizopuspepsin At Ph 4.6 Lengt 2e-09
1ls5_A328 Crystal Structure Of Plasmepsin Iv From P. Falcipar 2e-09
3aup_A403 Crystal Structure Of Basic 7s Globulin From Soybean 3e-09
3apr_E325 Binding Of A Reduced Peptide Inhibitor To The Aspar 4e-09
4b1c_A375 New Aminoimidazoles As Bace-1 Inhibitors: From Rati 6e-09
1tzs_A351 Crystal Structure Of An Activation Intermediate Of 9e-09
2qzw_A341 Secreted Aspartic Proteinase (Sap) 1 From Candida A 1e-08
2bju_A453 Plasmepsin Ii Complexed With A Highly Active Achira 2e-08
3f9q_A329 Re-Refinement Of Uncomplexed Plasmepsin Ii From Pla 3e-08
1m43_A331 Crystal Structure Of Pmii In Complex With Pepstatin 3e-08
2h6s_A340 Secreted Aspartic Proteinase (sap) 3 From Candida A 4e-08
1lf3_A331 Crystal Structure Of Plasmepsin Ii From P Falciparu 4e-08
1pfz_A380 Proplasmepsin Ii From Plasmodium Falciparum Length 4e-08
1sme_A329 Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From P 4e-08
3vla_A413 Crystal Structure Of Edgp Length = 413 6e-08
3vlb_A413 Crystal Structure Of Xeg-Edgp Length = 413 6e-08
1qs8_B329 Crystal Structure Of The P. Vivax Aspartic Proteina 2e-07
1miq_A375 Crystal Structure Of Proplasmepsin From The Human M 3e-07
3fv3_A339 Secreted Aspartic Protease 1 From Candida Parapsilo 7e-07
1qdm_A478 Crystal Structure Of Prophytepsin, A Zymogen Of A B 1e-06
1j71_A334 Structure Of The Extracellular Aspartic Proteinase 3e-06
2qzx_A342 Secreted Aspartic Proteinase (Sap) 5 From Candida A 3e-06
1b5f_A239 Native Cardosin A From Cynara Cardunculus L. Length 2e-05
2rmp_A361 Rmp-Pepstatin A Complex Length = 361 2e-05
3qrv_A336 Crystal Structure Of Plasmepsin I (Pmi) From Plasmo 2e-05
1eag_A342 Secreted Aspartic Proteinase (Sap2) From Candida Al 3e-05
1lya_B241 Crystal Structures Of Native And Inhibited Forms Of 6e-05
1zap_A342 Secreted Aspartic Protease From C. Albicans Length 7e-05
3oad_A166 Design And Optimization Of New Piperidines As Renin 1e-04
2anl_A327 X-Ray Crystal Structure Of The Aspartic Protease Pl 3e-04
1mpp_A361 X-Ray Analyses Of Aspartic Proteinases. V. Structur 4e-04
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A Hydroxyethylenamine Transition-State Inhibitor Length = 383 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 173/382 (45%), Gaps = 70/382 (18%)
Query: 84  GYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNL 143
           GYY   L IGTPPQ   ++VDTGS+   V  A   H   + D  F+ + SSTY+    ++
Sbjct: 14  GYYLEML-IGTPPQKLQILVDTGSSNFAV--AGTPH--SYIDTYFDTERSSTYRSKGFDV 68
Query: 144 YCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFG---NESDLKPQRAVFGCENVETGDL 200
                          KY +  S +G +GED+++     N S L     +F  EN     L
Sbjct: 69  TV-------------KYTQ-GSWTGFVGEDLVTIPKGFNTSFLVNIATIFESENFF---L 111
Query: 201 YSQHADGIIGLGRGDL--------SVVDQLVEKGVISDSFS--LCYGGMDVG-----GGA 245
                +GI+GL    L        +  D LV +  I + FS  +C  G+ V      GG+
Sbjct: 112 PGIKWNGILGLAYATLAKPSSSLETFFDSLVTQANIPNVFSMQMCGAGLPVAGSGTNGGS 171
Query: 246 MVLGGISP---PKDMVFTHSDPVRSP-YYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDS 301
           +VLGGI P     D+ +T   P++   YY I++  + + G+ L L+ + ++     ++DS
Sbjct: 172 LVLGGIEPSLYKGDIWYT---PIKEEWYYQIEILKLEIGGQSLNLDCREYNADK-AIVDS 227
Query: 302 GTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDT----FP 357
           GTT   LP+  F    DA++  +     I    P ++D  ++G+       S+T    FP
Sbjct: 228 GTTLLRLPQKVF----DAVVEAVARASLI----PEFSDGFWTGSQLACWTNSETPWSYFP 279
Query: 358 AVEMAFGNGQ-----KLLLAPENYLFRHSKVRGAYCLGIFQNGRDPTT---LLGGIIVRN 409
            + +   +       ++ + P+ Y+     +        ++ G  P+T   ++G  ++  
Sbjct: 280 KISIYLRDENSSRSFRITILPQLYI--QPMMGAGLNYECYRFGISPSTNALVIGATVMEG 337
Query: 410 TLVMYDREHSKIGFWKTNCSEL 431
             V++DR   ++GF  + C+E+
Sbjct: 338 FYVIFDRAQKRVGFAASPCAEI 359
>pdb|1PSA|A Chain A, Structure Of A Pepsin(Slash)renin Inhibitor Complex Reveals A Novel Crystal Packing Induced By Minor Chemical Alterations In The Inhibitor Length = 326 Back     alignment and structure
>pdb|5PEP|A Chain A, X-Ray Analyses Of Aspartic Proteases. Ii. Three-Dimensional Structure Of The Hexagonal Crystal Form Of Porcine Pepsin At 2.3 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|1F34|A Chain A, Crystal Structure Of Ascaris Pepsin Inhibitor-3 Bound To Porcine Pepsin Length = 326 Back     alignment and structure
>pdb|3PSG|A Chain A, The High Resolution Crystal Structure Of Porcine Pepsinogen Length = 370 Back     alignment and structure
>pdb|2PSG|A Chain A, Refined Structure Of Porcine Pepsinogen At 1.8 Angstroms Resolution Length = 370 Back     alignment and structure
>pdb|3PEP|A Chain A, Revised 2.3 Angstroms Structure Of Porcine Pepsin. Evidence For A Flexible Subdomain Length = 326 Back     alignment and structure
>pdb|4PEP|A Chain A, The Molecular And Crystal Structures Of Monoclinic Porcine Pepsin Refined At 1.8 Angstroms Resolution Length = 326 Back     alignment and structure
>pdb|1FLH|A Chain A, Crystal Structure Of Human Uropepsin At 2.45 A Resolution Length = 326 Back     alignment and structure
>pdb|1PSO|E Chain E, The Crystal Structure Of Human Pepsin And Its Complex With Pepstatin Length = 326 Back     alignment and structure
>pdb|4AA9|A Chain A, Camel Chymosin At 1.6a Resolution Length = 320 Back     alignment and structure
>pdb|3CMS|A Chain A, Engineering Enzyme Sub-Site Specificity: Preparation, Kinetic Characterization And X-Ray Analysis At 2.0-Angstroms Resolution Of Val111phe Site-Mutated Calf Chymosin Length = 323 Back     alignment and structure
>pdb|1CZI|E Chain E, Chymosin Complex With The Inhibitor Cp-113972 Length = 323 Back     alignment and structure
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432 Length = 414 Back     alignment and structure
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1 Length = 404 Back     alignment and structure
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor (2) Length = 406 Back     alignment and structure
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea) Bace-1 Inhibitors Length = 386 Back     alignment and structure
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An Amino- Ethylene Inhibitor Length = 388 Back     alignment and structure
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596 Length = 390 Back     alignment and structure
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor Length = 391 Back     alignment and structure
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor Length = 391 Back     alignment and structure
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor Length = 406 Back     alignment and structure
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor Length = 412 Back     alignment and structure
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase) Length = 411 Back     alignment and structure
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0 Length = 411 Back     alignment and structure
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)- Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)- Acetamide Length = 405 Back     alignment and structure
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic Domain. Length = 389 Back     alignment and structure
>pdb|2QU2|A Chain A, Bace1 With Compound 1 Length = 415 Back     alignment and structure
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h- Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide Length = 412 Back     alignment and structure
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 388 Back     alignment and structure
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485 Length = 395 Back     alignment and structure
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As Beta Secretase (Bace) Inhibitors Length = 390 Back     alignment and structure
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Inhibitor Length = 405 Back     alignment and structure
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With 2-Amino-3-Methyl-6- ((1s, 2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One Length = 416 Back     alignment and structure
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Ixs Length = 411 Back     alignment and structure
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor Length = 413 Back     alignment and structure
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor Length = 405 Back     alignment and structure
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572 Length = 395 Back     alignment and structure
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph 5.0 Length = 411 Back     alignment and structure
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Aur200 Length = 402 Back     alignment and structure
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An Exosite- Binding Antibody Length = 402 Back     alignment and structure
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1 Inhibitors: Prime Side Chromane-Containing Inhibitors Length = 408 Back     alignment and structure
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 5 Length = 402 Back     alignment and structure
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1 Length = 409 Back     alignment and structure
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With Nvp-Amk640 Length = 408 Back     alignment and structure
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The Presence Of An Inhibitor Length = 455 Back     alignment and structure
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1 Length = 433 Back     alignment and structure
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor Length = 433 Back     alignment and structure
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132 Length = 455 Back     alignment and structure
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With Compound 8c Length = 455 Back     alignment and structure
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-1-Benzyl-2-Hydroxy- 3-((1,1, 5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2- Oxopyrrolidin-1-Yl)benzamide Length = 392 Back     alignment and structure
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1 Length = 388 Back     alignment and structure
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid(3-Mercapto-Propyl)-Amide Length = 405 Back     alignment and structure
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-[1-(2, 6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto- Butyramide Length = 405 Back     alignment and structure
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a Length = 385 Back     alignment and structure
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide Length = 405 Back     alignment and structure
>pdb|1AM5|A Chain A, The Crystal Structure And Proposed Amino Acid Sequence Of A Pepsin From Atlantic Cod (Gadus Morhua) Length = 324 Back     alignment and structure
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic Acid (2-Mercapto-Ethyl)- Amide Length = 405 Back     alignment and structure
>pdb|3VCM|A Chain A, Crystal Structure Of Human Prorenin Length = 335 Back     alignment and structure
>pdb|2X0B|A Chain A, Crystal Structure Of Human Angiotensinogen Complexed With Renin Length = 383 Back     alignment and structure
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At 1.62 Angstroms Resolution Length = 329 Back     alignment and structure
>pdb|3D91|A Chain A, Human Renin In Complex With Remikiren Length = 341 Back     alignment and structure
>pdb|2I4Q|A Chain A, Human ReninPF02342674 COMPLEX Length = 336 Back     alignment and structure
>pdb|2G24|A Chain A, Ketopiperazine-Based Renin Inhibitors: Optimization Of The "c" Ring Length = 333 Back     alignment and structure
>pdb|2BKS|A Chain A, Crystal Structure Of Renin-Pf00074777 Complex Length = 340 Back     alignment and structure
>pdb|1HRN|A Chain A, High Resolution Crystal Structures Of Recombinant Human Renin In Complex With Polyhydroxymonoamide Inhibitors Length = 337 Back     alignment and structure
>pdb|1DP5|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant Inhibitor Length = 329 Back     alignment and structure
>pdb|1G0V|A Chain A, The Structure Of Proteinase A Complexed With A Ia3 Mutant, Mvv Length = 329 Back     alignment and structure
>pdb|2JXR|A Chain A, Structure Of Yeast Proteinase A Length = 329 Back     alignment and structure
>pdb|1SMR|A Chain A, The 3-D Structure Of Mouse Submaxillary Renin Complexed With A Decapeptide Inhibitor Ch-66 Based On The 4-16 Fragment Of Rat Angiotensinogen Length = 335 Back     alignment and structure
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6 Length = 325 Back     alignment and structure
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In Complex With Pepstatin A Length = 328 Back     alignment and structure
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean Length = 403 Back     alignment and structure
>pdb|3APR|E Chain E, Binding Of A Reduced Peptide Inhibitor To The Aspartic Proteinase From Rhizopus Chinensis. Implications For A Mechanism Of Action Length = 325 Back     alignment and structure
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational Design To Ab-Lowering In Brain Length = 375 Back     alignment and structure
>pdb|1TZS|A Chain A, Crystal Structure Of An Activation Intermediate Of Cathepsin E Length = 351 Back     alignment and structure
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans Length = 341 Back     alignment and structure
>pdb|2BJU|A Chain A, Plasmepsin Ii Complexed With A Highly Active Achiral Inhibitor Length = 453 Back     alignment and structure
>pdb|3F9Q|A Chain A, Re-Refinement Of Uncomplexed Plasmepsin Ii From Plasmodium Falciparum Length = 329 Back     alignment and structure
>pdb|1M43|A Chain A, Crystal Structure Of Pmii In Complex With Pepstatin A To 2.4 A Length = 331 Back     alignment and structure
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans Length = 340 Back     alignment and structure
>pdb|1LF3|A Chain A, Crystal Structure Of Plasmepsin Ii From P Falciparum In Complex With Inhibitor Eh58 Length = 331 Back     alignment and structure
>pdb|1PFZ|A Chain A, Proplasmepsin Ii From Plasmodium Falciparum Length = 380 Back     alignment and structure
>pdb|1SME|A Chain A, Plasmepsin Ii, A Hemoglobin-Degrading Enzyme From Plasmodium Falciparum, In Complex With Pepstatin A Length = 329 Back     alignment and structure
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp Length = 413 Back     alignment and structure
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp Length = 413 Back     alignment and structure
>pdb|1MIQ|A Chain A, Crystal Structure Of Proplasmepsin From The Human Malarial Pathogen Plasmodium Vivax Length = 375 Back     alignment and structure
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A Length = 339 Back     alignment and structure
>pdb|1QDM|A Chain A, Crystal Structure Of Prophytepsin, A Zymogen Of A Barley Vacuolar Aspartic Proteinase. Length = 478 Back     alignment and structure
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From Candida Tropicalis Yeast Length = 334 Back     alignment and structure
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans Length = 342 Back     alignment and structure
>pdb|1B5F|A Chain A, Native Cardosin A From Cynara Cardunculus L. Length = 239 Back     alignment and structure
>pdb|2RMP|A Chain A, Rmp-Pepstatin A Complex Length = 361 Back     alignment and structure
>pdb|3QRV|A Chain A, Crystal Structure Of Plasmepsin I (Pmi) From Plasmodium Falciparum Length = 336 Back     alignment and structure
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans Complexed With A70450 Length = 342 Back     alignment and structure
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human Cathepsin D: Implications For Lysosomal Targeting And Drug Design Length = 241 Back     alignment and structure
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans Length = 342 Back     alignment and structure
>pdb|3OAD|A Chain A, Design And Optimization Of New Piperidines As Renin Inhibitors Length = 166 Back     alignment and structure
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease Plasmepsin 4 From The Malarial Parasite Plasmodium Malariae Bound To An Allophenylnorstatine Based Inhibitor Length = 327 Back     alignment and structure
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And Refinement At 2.0 Angstroms Resolution Of The Aspartic Proteinase From Mucor Pusillus Length = 361 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query620
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 5e-86
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 5e-82
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 3e-77
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 4e-75
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 8e-54
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 7e-50
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 7e-36
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 3e-35
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 5e-35
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 1e-34
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 2e-33
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 7e-33
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 1e-32
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 1e-32
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 1e-32
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 2e-32
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 1e-31
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 1e-31
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-31
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 3e-31
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 4e-31
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 9e-31
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 9e-31
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 1e-28
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 7e-27
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 7e-27
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 8e-27
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 5e-26
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 1e-04
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 5e-24
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 2e-23
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 1e-22
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 8e-21
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 4e-17
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 8e-11
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 2e-04
3k1f_M197 Transcription initiation factor IIB; RNA polymeras 3e-04
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  273 bits (699), Expect = 5e-86
 Identities = 67/379 (17%), Positives = 127/379 (33%), Gaps = 42/379 (11%)

Query: 83  NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCN 142
            G +   L   TP     ++VD      +V C        +Q P       S     +C 
Sbjct: 20  TGLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCL 79

Query: 143 ----LYCNCDRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKP--------QRAVF 190
                      +    +         +  G LGED+++                  + +F
Sbjct: 80  SCPAASRPGCHKNTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLF 139

Query: 191 GCENVETGD-LYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLG 249
            C           ++  G+ GLG   +S+ +QL     +   F+ C        GA++ G
Sbjct: 140 SCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRYPTSKGAIIFG 199

Query: 250 GISPP----------KDMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVF-----DGK 294
                           D+ FT         YN+ +  I +    +    K+         
Sbjct: 200 DAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTS 259

Query: 295 HGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSD 354
            GT++ + T +  L ++ + AF      +L    Q++   P    +CF+          +
Sbjct: 260 GGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAP--FGLCFNSNK------IN 311

Query: 355 TFPAVEMAF--GNGQKLLLAPENYLFRHSKVRGAYCLGIFQNGRD--PTTLLGGIIVRNT 410
            +P+V++     NG    ++ E+ + +     G  CLG+   G        LG   +   
Sbjct: 312 AYPSVDLVMDKPNGPVWRISGEDLMVQAQP--GVTCLGVMNGGMQPRAEITLGARQLEEN 369

Query: 411 LVMYDREHSKIGFWKTNCS 429
           LV++D   S++GF  ++  
Sbjct: 370 LVVFDLARSRVGFSTSSLH 388
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 87 Back     alignment and structure
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query620
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
3lpj_A455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1qdm_A478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
2ewy_A383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
3vf3_A402 Beta-secretase 1; structure-based drug design, hyd 100.0
2qp8_A395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.84
1b5f_B87 Protein (cardosin A); hydrolase, aspartic proteina 99.63
2k1k_A38 Ephrin type-A receptor 1; EPHA1, receptor tyrosine 97.34
2l2t_A44 Receptor tyrosine-protein kinase ERBB-4; transmemb 96.64
2ks1_B44 Epidermal growth factor receptor; ERBB1, ERBB2, tr 96.26
2jwa_A44 Receptor tyrosine-protein kinase ERBB-2; transmemb 94.95
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 93.41
2i1a_A148 DNA damage-inducible protein DDI1; acid protease f 90.56
2k9y_A41 Ephrin type-A receptor 2; receptor tyrosine kinase 90.46
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 90.31
2klu_A70 T-cell surface glycoprotein CD4; cell membrane, di 88.22
3s8i_A148 Protein DDI1 homolog 1; protease, structural genom 86.54
2l34_A33 TYRO protein tyrosine kinase-binding protein; immu 85.41
1iij_A35 ERBB-2 receptor protein-tyrosine kinase; alpha-hel 84.38
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.8e-56  Score=469.95  Aligned_cols=309  Identities=26%  Similarity=0.478  Sum_probs=256.7

Q ss_pred             eeeeeccCCccceeEEEEEEecCCCcEEEEEEeCCCCceeEeCCCCC----CCCCCCCCCCCCCCCcccccccCcCCccc
Q 047816           72 ARMRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCE----HCGDHQDPKFEPDLSSTYQPVKCNLYCNC  147 (620)
Q Consensus        72 ~~~~l~~~~~~~~~Y~~~i~iGTP~Q~~~v~vDTGSs~~WV~~~~c~----~C~~~~~~~y~p~~SsT~~~~~c~~~c~c  147 (620)
                      ...++.+.  .+.+|+++|+||||+|+|.|++||||+++||+|..|.    .|..+  +.|||++|+||+..+       
T Consensus        51 ~~~~l~n~--~~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~--~~y~~~~SsT~~~~~-------  119 (383)
T 2x0b_A           51 SSVILTNY--MDTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYH--KLFDASDSSSYKHNG-------  119 (383)
T ss_dssp             CEEEEEEE--TTTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTS--CCBCGGGCTTCEEEE-------
T ss_pred             ceEeeeec--CCCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCC--CCCCCCCCCcEEECC-------
Confidence            34666653  3678999999999999999999999999999999996    69876  799999999999976       


Q ss_pred             CCCCCcceeEEeeccCCceeEEEEEEEEEeCCCCCCCccceEEEEEEeccCC-CcCCCcceEEecCCCCC------chHH
Q 047816          148 DRERAQCVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGD-LYSQHADGIIGLGRGDL------SVVD  220 (620)
Q Consensus       148 ~~~~~~~~~~~~Y~dg~~~~G~~~~D~v~lg~~~~~~~~~~~fg~~~~~~~~-~~~~~~dGIlGLg~~~~------s~~~  220 (620)
                            |.|.++|++| ++.|.+++|+|++|+   +.++ +.|||+..+.+. +....+|||||||++.+      ++++
T Consensus       120 ------~~~~i~Yg~G-s~~G~~~~Dtv~ig~---~~v~-~~Fg~a~~~~g~~f~~~~~dGIlGLg~~~~s~~~~~~~~~  188 (383)
T 2x0b_A          120 ------TELTLRYSTG-TVSGFLSQDIITVGG---ITVT-QMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIFD  188 (383)
T ss_dssp             ------EEEEEECSSC-EEEEEEEEEEEEETT---EEEE-EEEEEEEECCHHHHTTCSSSEEEECSCGGGCGGGCCCHHH
T ss_pred             ------cEEEEEcCCc-cEEEEEEeeEEEEcC---ceEE-EEEEEEEecCCcccccCCCceEeccCCCccccCCCCcHHH
Confidence                  6899999995 589999999999998   6778 999999987553 33457899999999765      4899


Q ss_pred             HHHHcCCcc-cceEEeecCCCCC----CceEEECCCCCCCC---ceEeecCCCCCCeeEEEEeEEEEccEEecCCCCccC
Q 047816          221 QLVEKGVIS-DSFSLCYGGMDVG----GGAMVLGGISPPKD---MVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFD  292 (620)
Q Consensus       221 ~L~~~g~I~-~~FSl~l~~~~~~----~G~l~fGgiD~~~~---~~~~~~~~~~~~~w~v~l~~i~v~g~~~~~~~~~~~  292 (620)
                      +|++||+|+ ++||+||++....    +|.|+|||+|++++   +.|+++  ....+|.|.+++|.|+++.+.     ..
T Consensus       189 ~l~~qg~i~~~~FS~~L~~~~~~~~~~~G~l~fGg~d~~~y~G~l~~~pv--~~~~~w~v~l~~i~v~~~~~~-----~~  261 (383)
T 2x0b_A          189 NIISQGVLKEDVFSFYYNRDSENSQSLGGQIVLGGSDPQHYEGNFHYINL--IKTGVWQIQMKGVSVGSSTLL-----CE  261 (383)
T ss_dssp             HHHTTTCCSSSEEEEEECCSCC----CCEEEEESSCCGGGEEEEEEEEEB--SSTTSCEEEECEEEESSCCCB-----ST
T ss_pred             HHHhCCCCCCCEEEEEEcCCCCcccCCCcEEEECCcChHHcCCceEEEEc--CCCceEEEEEeEEEeCCceEE-----cC
Confidence            999999998 8999999986433    79999999999873   344444  456899999999999987642     13


Q ss_pred             CCCceEeeccceeeeecHHHHHHHHHHHHHHhhhcccccCCCCCCccccccCCCCCccccCCCCCeEEEEECCCcEEEeC
Q 047816          293 GKHGTVLDSGTTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLA  372 (620)
Q Consensus       293 ~~~~ailDSGtt~~~LP~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~  372 (620)
                      .+..+++||||+++++|.+++++|.+++++..        ..+.|.++|+..         +.+|+|+|+| +|.+|+||
T Consensus       262 ~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~--------~~g~~~v~C~~~---------~~~P~i~f~~-~g~~~~l~  323 (383)
T 2x0b_A          262 DGCLALVDTGASYISGSTSSIEKLMEALGAKK--------RLFDYVVKCNEG---------PTLPDISFHL-GGKEYTLT  323 (383)
T ss_dssp             TCEEEEECTTCSSEEECHHHHHHHHHHHTCEE--------CSSCEEEEGGGT---------TTCCCEEEEE-TTEEEEEC
T ss_pred             CCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc--------cCCcEEEecccc---------ccCceEEEEE-CCEEEEEC
Confidence            45689999999999999999999999985432        234567789531         5789999999 89999999


Q ss_pred             CCCcEEEecccCCeEEEEEEecC-----CCCceeehHhhhceEEEEEeCCCCEEEEEecC
Q 047816          373 PENYLFRHSKVRGAYCLGIFQNG-----RDPTTLLGGIIVRNTLVMYDREHSKIGFWKTN  427 (620)
Q Consensus       373 ~~~yi~~~~~~~~~~Cl~~~~~~-----~~~~~ILG~~fLr~~yvvfD~en~rIGfA~~~  427 (620)
                      +++|+++....++..|+..+...     .++.||||+.|||++|+|||++|+|||||+++
T Consensus       324 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a~  383 (383)
T 2x0b_A          324 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALAR  383 (383)
T ss_dssp             HHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEEC
T ss_pred             HHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEcC
Confidence            99999876543456898544332     34689999999999999999999999999874
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1b5f_B Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A Back     alignment and structure
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens} Back     alignment and structure
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} Back     alignment and structure
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Back     alignment and structure
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens} Back     alignment and structure
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Back     alignment and structure
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B Back     alignment and structure
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 620
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-55
d2qp8a1387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 2e-53
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 4e-46
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 1e-43
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 3e-41
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 9e-41
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-40
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-40
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 4e-40
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 5e-40
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 4e-39
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 4e-39
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 1e-38
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 1e-38
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 2e-38
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 9e-38
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 1e-36
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 2e-36
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 2e-35
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 3e-31
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 4e-30
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 8e-26
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  189 bits (481), Expect = 3e-55
 Identities = 65/377 (17%), Positives = 119/377 (31%), Gaps = 36/377 (9%)

Query: 83  NGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKC- 141
              YT     G       L++D    + +  C   +   +         L++ Y    C 
Sbjct: 13  TSLYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIPCSSPTCLLANAYPAPGCP 67

Query: 142 NLYCNCDRERAQC-VYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAV-----FGCENV 195
              C  D+    C  Y       + ++G L             KP   V       C   
Sbjct: 68  APSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSKVNVGVLAACAPS 127

Query: 196 ETGDLYSQHADGIIGLGRGDLSVVDQLVEKGVISDSFSLCYGGMDVGGGAMVLGGISPPK 255
           +      + + G+ GL    L++  Q+     +++ F LC      G      G +  P+
Sbjct: 128 KLLASLPRGSTGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPGVAIFGGGPVPWPQ 187

Query: 256 DMVFTHSDPV----RSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSGTTYAYLPEA 311
                   P+     SP + I  + I V    +P+         G +L +   Y  L   
Sbjct: 188 FTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGAL-ATGGVMLSTRLPYVLLRPD 246

Query: 312 AFLAFKDAIMSELQSLKQIRGPDPNYN------DICFSGAPSDVSQLSDTFPAVEMAFGN 365
            +    DA    L +      P            +C+       +      P V++    
Sbjct: 247 VYRPLMDAFTKALAAQHANGAPVARAVEAVAPFGVCYDTKTLGNNLGGYAVPNVQLGLDG 306

Query: 366 GQKLLLAPENYLFRHSKVRGAYCLGIFQ-------NGRDPTTLLGGIIVRNTLVMYDREH 418
           G    +  +N +    +  G  C+   +       +GR P  +LGG  + + ++ +D E 
Sbjct: 307 GSDWTMTGKNSMVDVKQ--GTACVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEK 364

Query: 419 SKIGFWK----TNCSEL 431
            ++GF +    T C  L
Sbjct: 365 KRLGFSRLPHFTGCGGL 381
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query620
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d2qp8a1387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.3e-52  Score=440.37  Aligned_cols=306  Identities=27%  Similarity=0.496  Sum_probs=252.1

Q ss_pred             eeeccCCccceeEEEEEEecCCCcEEEEEEeCCCCceeEeCCCCCCCCCCCCCCCCCCCCcccccccCcCCcccCCCCCc
Q 047816           74 MRLYDDLLLNGYYTTRLWIGTPPQTFALIVDTGSTVTYVPCATCEHCGDHQDPKFEPDLSSTYQPVKCNLYCNCDRERAQ  153 (620)
Q Consensus        74 ~~l~~~~~~~~~Y~~~i~iGTP~Q~~~v~vDTGSs~~WV~~~~c~~C~~~~~~~y~p~~SsT~~~~~c~~~c~c~~~~~~  153 (620)
                      .+|.+.  .|.+|+++|+||||+|++.|++||||+++||+|..|..|..+.++.|||++|+||+..+             
T Consensus        48 ~~l~n~--~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~-------------  112 (370)
T d3psga_          48 EPLENY--LDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATS-------------  112 (370)
T ss_dssp             CTTGGG--TTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEE-------------
T ss_pred             cccccc--cCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCC-------------
Confidence            455543  36789999999999999999999999999999999999887777899999999999976             


Q ss_pred             ceeEEeeccCCceeEEEEEEEEEeCCCCCCCccceEEEEEEeccCCCc-CCCcceEEecCCCCC------chHHHHHHcC
Q 047816          154 CVYERKYAEMSSSSGVLGEDIISFGNESDLKPQRAVFGCENVETGDLY-SQHADGIIGLGRGDL------SVVDQLVEKG  226 (620)
Q Consensus       154 ~~~~~~Y~dg~~~~G~~~~D~v~lg~~~~~~~~~~~fg~~~~~~~~~~-~~~~dGIlGLg~~~~------s~~~~L~~~g  226 (620)
                      |.|++.|++ +++.|.++.|++.+++   .++.++.||++....+.+. ....+||+|||++..      +++++|+++|
T Consensus       113 ~~~~~~Yg~-Gs~~G~~~~d~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~~~~~~~~~~~~~~~l~~~~  188 (370)
T d3psga_         113 QELSITYGT-GSMTGILGYDTVQVGG---ISDTNQIFGLSETEPGSFLYYAPFDGILGLAYPSISASGATPVFDNLWDQG  188 (370)
T ss_dssp             EEEEEESSS-CEEEEEEEEEEEEETT---EEEEEEEEEEECSCCCGGGGGCSCSEEEECSCGGGCGGGCCCHHHHHHHTT
T ss_pred             CcEEEEeCC-ceEEEEEEEEEEeeec---eeeeeeEEEEEeeccCceecccccccccccccCcccccCCCchhhhhhhhc
Confidence            689999998 5789999999999999   6788999999988766543 356799999998653      5999999999


Q ss_pred             Ccc-cceEEeecCCCCCCceEEECCCCCCC---CceEeecCCCCCCeeEEEEeEEEEccEEecCCCCccCCCCceEeecc
Q 047816          227 VIS-DSFSLCYGGMDVGGGAMVLGGISPPK---DMVFTHSDPVRSPYYNIDLKVIHVAGKPLPLNPKVFDGKHGTVLDSG  302 (620)
Q Consensus       227 ~I~-~~FSl~l~~~~~~~G~l~fGgiD~~~---~~~~~~~~~~~~~~w~v~l~~i~v~g~~~~~~~~~~~~~~~ailDSG  302 (620)
                      +|+ ++||+|+.+....+|.|+|||+|+++   .+.|++  .....+|.|.++++.++++.+..     ..+..++||||
T Consensus       189 ~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p--~~~~~~w~v~~~~i~v~g~~~~~-----~~~~~aiiDSG  261 (370)
T d3psga_         189 LVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVP--VSVEGYWQITLDSITMDGETIAC-----SGGCQAIVDTG  261 (370)
T ss_dssp             CSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEE--CSEETTEEEEECEEESSSSEEEC-----TTCEEEEECTT
T ss_pred             ccccceeEEEeecCCCCCceEecCCcCchhcccceeEEe--ecccceEEEEEeeEEeCCeEEec-----CCCccEEEecC
Confidence            999 89999999877778999999999997   344444  34667999999999999987764     23457999999


Q ss_pred             ceeeeecHHHHHHHHHHHHHHhhhcccccCCCCCCccccccCCCCCccccCCCCCeEEEEECCCcEEEeCCCCcEEEecc
Q 047816          303 TTYAYLPEAAFLAFKDAIMSELQSLKQIRGPDPNYNDICFSGAPSDVSQLSDTFPAVEMAFGNGQKLLLAPENYLFRHSK  382 (620)
Q Consensus       303 tt~~~LP~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~yi~~~~~  382 (620)
                      |++++||++++++|.+++.+...       ....+..+|+.         .+.+|+|+|+| +|.++.|++++|+++.. 
T Consensus       262 Ts~~~lp~~~~~~i~~~l~~~~~-------~~~~~~~~C~~---------~~~~P~l~f~f-~g~~~~l~~~~yi~~~~-  323 (370)
T d3psga_         262 TSLLTGPTSAIANIQSDIGASEN-------SDGEMVISCSS---------IDSLPDIVFTI-DGVQYPLSPSAYILQDD-  323 (370)
T ss_dssp             CCSEEEEHHHHHHHHHHTTCEEC-------TTCCEECCGGG---------GGGCCCEEEEE-TTEEEEECHHHHEEECS-
T ss_pred             CceEeCCHHHHHHHHHHhCCeee-------cCCcEEEeccc---------cCCCceEEEEE-CCEEEEEChHHeEEEcC-
Confidence            99999999999999998855432       33456677843         15789999999 89999999999998753 


Q ss_pred             cCCeEEE-EEEe----cCCCCceeehHhhhceEEEEEeCCCCEEEEEec
Q 047816          383 VRGAYCL-GIFQ----NGRDPTTLLGGIIVRNTLVMYDREHSKIGFWKT  426 (620)
Q Consensus       383 ~~~~~Cl-~~~~----~~~~~~~ILG~~fLr~~yvvfD~en~rIGfA~~  426 (620)
                         ..|. ++..    ...++.||||++|||++|+|||++|+||||||+
T Consensus       324 ---~~c~~~~~~~~~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp~  369 (370)
T d3psga_         324 ---DSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV  369 (370)
T ss_dssp             ---SCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             ---CeEEEEEEEcccCCCCCCcEEECHHhhcCEEEEEECCCCEEEEEec
Confidence               2353 3322    223467999999999999999999999999996
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure