Citrus Sinensis ID: 047830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310---
Protein Sequence
MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRDRNENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQLPAEPYWATGRPAPF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccEEEEEEEcccccHHHHHHHHHHHcccEEEEEccccEEEEEEEccccccccEEEEEEEEEEEEEEEcccccccccccccEEEEEEcccccEEcccccccEEEcccEEEEEEEcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHcccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccEEEEEEccccEEEEccEHHHHHccccEEEEEEEccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mnpltahgrplpppfhtrdihlqphhhqfqqqqqhhhhhqqqqqnseednsslnrgqkrdrneNNIANAMEEGEELAVAtgeggeitrrprgrpagsknkpkppiiitRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGIcilsgtgtvtnvtlrqpaspgavvTLHGRFEILSlagsflpppappaasglTIYLaggqgqvvggsvvgplvasgPVVIMAASFgnaayerlpleeeetpeasipgsrplgspevnvgqpqqqqQQSQSHQQQllqdpnasfihglppnllssvqlpaepywatgrpapf
Flexible Loop (DISEMBL)
mnpltahgrplppPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRDRNENNIANAMEEGEElavatgeggeitrrprgrpagsknkpkppiiiTRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGIcilsgtgtvtnvtlrqpASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQLPAEPYWATGRPAPF
Low Complexity Region (SEG)
MNPLTAHGRPLPPPFHTRDIhlqphhhqfqqqqqhhhhhqqqqqNSEEDNSSLNRGQKRDRNENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEIlslagsflpppappaasglTIYlaggqgqvvggsvvgplvasgpvvIMAASFGNAAYerlpleeeetpeASIPGSRPLGSPEVNVGqpqqqqqqsqshqqqllqDPNASFIHGLPPNLLSSVQLPAEPYWATGRPAPF
Disordered region (IsUnstruct)
*********************************************************************************************************IITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAG*************LTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYE********************************************************************************
Disordered Region (DISOPRED)
**********LPPPFHTRD**********************************************************************************************ALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPP*P***SGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASF****************************************************************************YW********
Disordered Region (DISEMBL)
MNPLTAHGRPLPPPFHTRDIHLQP*********************************KRDRNENNIANAMEEGEELAVATGEGGEITRR**********KPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPL************SRPLGS**********************LQDPNASFIHGLPPNLLSSVQLPAEPYWATGRPAPF
Disordered Region (DISPRO)
**********LPPPFHTRDIHLQPHH*************************************************************************KPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERL*********************************************PNASFIHGLPPNLLSSVQLPAEPYWATGRPA**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRDRNENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEEETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQLPAEPYWATGRPAPF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	313	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.677	0.681	0.540	5e-40

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score =  165 bits (417), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/222 (54%), Positives = 150/222 (67%), Gaps = 10/222 (4%)

Query: 25  HHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRDRNENNIANAMEEGEELAVATGEGG 84
           HH Q Q Q   +   Q   Q+ +           R+ + +N  +  ++G   +       
Sbjct: 24  HHQQLQPQGGINLIDQHHHQHQQHQQQQQPSDDSRESDHSN-KDHHQQGRPDSDPNTSSS 82

Query: 85  EITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGIC 144
              +RPRGRP GSKNK KPPII+TRDS NALRSHV+E++ G DI++SVS +ARRR RG+ 
Sbjct: 83  APGKRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVS 142

Query: 145 ILSGTGTVTNVTLRQPASP---------GAVVTLHGRFEILSLAGSFLPPPAPPAASGLT 195
           +L G GTV+NVTLRQP +P         G VVTLHGRFEILSL G+ LPPPAPP A GL+
Sbjct: 143 VLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLS 202

Query: 196 IYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPL 237
           I+LAGGQGQVVGGSVV PL+AS PV++MAASF NA +ERLP+
Sbjct: 203 IFLAGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPI 244


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130,598,615
Number of Sequences: 539616
Number of extensions: 6022842
Number of successful extensions: 76869
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 267
Number of HSP's that attempted gapping in prelim test: 40511
Number of HSP's gapped (non-prelim): 26876
length of query: 313
length of database: 191,569,459
effective HSP length: 117
effective length of query: 196
effective length of database: 128,434,387
effective search space: 25173139852
effective search space used: 25173139852
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
224127406	300	predicted protein [Populus trichocarpa]	0.955	0.996	0.691	1e-100
225453933	300	PREDICTED: putative DNA-binding protein	0.945	0.986	0.737	2e-98
224063913	298	predicted protein [Populus trichocarpa]	0.936	0.983	0.694	8e-91
225426655	302	PREDICTED: putative DNA-binding protein	0.955	0.990	0.681	5e-90
255541340	299	ESC, putative [Ricinus communis] gi|2235	0.952	0.996	0.710	5e-90
224071611	303	predicted protein [Populus trichocarpa]	0.961	0.993	0.690	3e-89
224058649	302	predicted protein [Populus trichocarpa]	0.955	0.990	0.659	1e-87
356505681	310	PREDICTED: putative DNA-binding protein	0.955	0.964	0.672	5e-87
255537141	298	ESC, putative [Ricinus communis] gi|2235	0.939	0.986	0.679	3e-85
356563284	287	PREDICTED: putative DNA-binding protein	0.913	0.996	0.646	2e-82

>gi|224127406|ref|XP_002320066.1| predicted protein [Populus trichocarpa] gi|222860839|gb|EEE98381.1| predicted protein [Populus trichocarpa]

 Score =  372 bits (954), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 217/314 (69%), Positives = 243/314 (77%), Gaps = 15/314 (4%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P++AHGRPLPPPFHTRD              Q  HH QQ  ++ +  N  LNRGQKR+
Sbjct: 1   MDPVSAHGRPLPPPFHTRD----------FHLHQFQHHQQQNSEDEQSGNGDLNRGQKRE 50

Query: 61  RNENNIANAMEEGEELAVATGEG-GEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHV 119
            +E N  N   EG EL  ++  G GEI+RRPRGRPAGSKNKPKPPIIITRDSANALRSHV
Sbjct: 51  HDEINNNNNTVEGLELVPSSSGGEGEISRRPRGRPAGSKNKPKPPIIITRDSANALRSHV 110

Query: 120 MEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLA 179
           MEIA G DIM+SVS FARRRQRG+CILSGTGTVTNVTL+QPASPGAVVTLHGRFEILSL+
Sbjct: 111 MEIATGSDIMESVSTFARRRQRGVCILSGTGTVTNVTLKQPASPGAVVTLHGRFEILSLS 170

Query: 180 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE 239
           GSFLPPPAPPAASGLT+YLAGGQGQV+GGSV GPL+ASGPVV+MAASFGNAAYERLPLEE
Sbjct: 171 GSFLPPPAPPAASGLTVYLAGGQGQVIGGSVAGPLLASGPVVVMAASFGNAAYERLPLEE 230

Query: 240 EETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQL 299
           +   +  + GS PLGSP +N       QQQ    QQQL+QDP  S   GLP NLL+SVQL
Sbjct: 231 DIESQTPMLGSGPLGSPGIN----NIGQQQQNQQQQQLMQDPKTSLFQGLPQNLLNSVQL 286

Query: 300 PAEPYWATGRPAPF 313
           PAE YW TG   P+
Sbjct: 287 PAEAYWGTGGRPPY 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453933|ref|XP_002279636.1| PREDICTED: putative DNA-binding protein ESCAROLA [Vitis vinifera] gi|147867329|emb|CAN81187.1| hypothetical protein VITISV_029906 [Vitis vinifera] gi|296089162|emb|CBI38865.3| unnamed protein product [Vitis vinifera]

 Score =  365 bits (936), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 230/312 (73%), Positives = 254/312 (81%), Gaps = 16/312 (5%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P+TAHGRPLPPPFHTRD+       Q     Q+ HH Q   ++ +  +SSLNR QKRD
Sbjct: 1   MDPVTAHGRPLPPPFHTRDL-------QLHHHHQYQHHPQANSEDEQSGSSSLNRAQKRD 53

Query: 61  RNENNIANAME--EGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSH 118
           R+E+N  N     +G+E   ++G+G EITRRPRGRPAGSKNKPKPPIIITRDSANALRSH
Sbjct: 54  RDESNATNNTSPIDGKEFGTSSGDG-EITRRPRGRPAGSKNKPKPPIIITRDSANALRSH 112

Query: 119 VMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSL 178
           VMEIA GCDIMDS++ FARRRQRGICILSG+GTVTNVTLRQPASPGAVVTLHGRFEILSL
Sbjct: 113 VMEIATGCDIMDSLNTFARRRQRGICILSGSGTVTNVTLRQPASPGAVVTLHGRFEILSL 172

Query: 179 AGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLE 238
           +GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPL+ASGPVVIMAASFGNAAYERLPLE
Sbjct: 173 SGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLE 232

Query: 239 EEETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQ 298
           +EE P+  IPGS PLGSP + VGQ  QQQQQ Q        DPNAS   GLPPNLL+S Q
Sbjct: 233 DEE-PQVPIPGSGPLGSPGM-VGQQPQQQQQQQQLL----PDPNASLFQGLPPNLLNSCQ 286

Query: 299 LPAEPYWATGRP 310
           LPAE YW T RP
Sbjct: 287 LPAEAYWGTARP 298

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063913|ref|XP_002301300.1| predicted protein [Populus trichocarpa] gi|222843026|gb|EEE80573.1| predicted protein [Populus trichocarpa]

 Score =  339 bits (870), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 221/318 (69%), Positives = 246/318 (77%), Gaps = 25/318 (7%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P+ AHGRPLPPPFHTRD              Q  H  QQ  ++ +  N +LNRGQKR+
Sbjct: 1   MDPVAAHGRPLPPPFHTRD----------FHLHQFQHQQQQNSEDEQSGNGNLNRGQKRE 50

Query: 61  RNE---NNIANAMEEGEELAVATGEG-GEITRRPRGRPAGSKNKPKPPIIITRDSANALR 116
             E   NN  N   EG+EL  ++  G GEITRRPRGRPAGSKNKPKPPIIITRDS NALR
Sbjct: 51  HAEIATNN--NNTAEGKELVPSSAGGEGEITRRPRGRPAGSKNKPKPPIIITRDSPNALR 108

Query: 117 SHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEIL 176
           SHVMEIA GCDIM+SVS FARRRQRG+CILS TGTVTNVTL+QPASPGAVVTLHGRFEIL
Sbjct: 109 SHVMEIATGCDIMESVSTFARRRQRGVCILSATGTVTNVTLKQPASPGAVVTLHGRFEIL 168

Query: 177 SLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLP 236
           SL+GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPL+ASGPVVIMAASFGNAAYERLP
Sbjct: 169 SLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLP 228

Query: 237 LEEEETPEASIPGSRPLGSPEV-NVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLS 295
           LEE+E+ +  +PG+ PLGSP V ++GQ  QQQ Q         QDPN S   GLP NLL+
Sbjct: 229 LEEDES-QTPVPGTGPLGSPGVSSIGQQNQQQHQLM-------QDPNTSLFQGLPQNLLN 280

Query: 296 SVQLPAEPYWATGRPAPF 313
           SVQLP+E YW TG   P+
Sbjct: 281 SVQLPSEAYWGTGGRPPY 298

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426655|ref|XP_002281296.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Vitis vinifera]

 Score =  337 bits (864), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 212/311 (68%), Positives = 240/311 (77%), Gaps = 12/311 (3%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P+TAHG  LPPPFHTRD+HL          QQ +   +Q        +S LNRGQKRD
Sbjct: 1   MDPVTAHGHSLPPPFHTRDLHLHHQQQHQFHPQQQNSEDEQS------GSSGLNRGQKRD 54

Query: 61  RNENN-IANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHV 119
           R++NN   N   EG E+   +G+G EI+RRPRGRPAGSKNKPKPPIIITRDSANALR+HV
Sbjct: 55  RDDNNENTNGGSEGNEMVGLSGDG-EISRRPRGRPAGSKNKPKPPIIITRDSANALRTHV 113

Query: 120 MEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLA 179
           MEIA+GCDI++SV+ FARRRQRG+CI+SGTGTVTNVTLRQPASPGA+VTLHGRFEILSL+
Sbjct: 114 MEIADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLS 173

Query: 180 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE 239
           GSFLPPPAPPAA+GLTIYLAGGQGQVVGGSVVG L+ASGPVVIMAASF NAAYERLPLEE
Sbjct: 174 GSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGQLLASGPVVIMAASFSNAAYERLPLEE 233

Query: 240 EETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQL 299
           E   + ++P                Q  QQ     QQLL DPNA   HGLPPNLL+S+QL
Sbjct: 234 E---DPALP-MPGGSLGSPGGVGQHQPPQQQPQQPQQLLADPNAPLFHGLPPNLLNSIQL 289

Query: 300 PAEPYWATGRP 310
           PAE YWATGRP
Sbjct: 290 PAEAYWATGRP 300

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541340|ref|XP_002511734.1| ESC, putative [Ricinus communis] gi|223548914|gb|EEF50403.1| ESC, putative [Ricinus communis]

 Score =  337 bits (863), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 223/314 (71%), Positives = 242/314 (77%), Gaps = 16/314 (5%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P+ AHGRPLPPPFHTRD  L  H H   Q        QQ  ++ +  N S+NRGQKR+
Sbjct: 1   MDPVAAHGRPLPPPFHTRD--LHLHPHHQFQHHHQQQQQQQNSEDEQTGNGSINRGQKRE 58

Query: 61  RNENNIANAMEEGEELAVATGEG-GEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHV 119
            +E        EG+EL   TG G GE+TRRPRGRPAGSKNKPKPPIIITRDSANALRSHV
Sbjct: 59  HDEITTP----EGKELVPTTGGGDGEMTRRPRGRPAGSKNKPKPPIIITRDSANALRSHV 114

Query: 120 MEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLA 179
           MEIANG DIM+SVS FARRRQRG+CILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSL+
Sbjct: 115 MEIANGSDIMESVSTFARRRQRGVCILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLS 174

Query: 180 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE 239
           GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPL+ASGPVVIMAASFGNAAYERLPLEE
Sbjct: 175 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLLASGPVVIMAASFGNAAYERLPLEE 234

Query: 240 EETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQL 299
           ++  +  +PGS PL SP V VGQ Q QQ Q            N     GLPPNLL+SVQL
Sbjct: 235 DDG-QVPVPGSGPLDSPGV-VGQTQPQQPQQLMQDP------NPPLFQGLPPNLLNSVQL 286

Query: 300 PAEPYWATGRPAPF 313
           PAE YW   RP PF
Sbjct: 287 PAEAYWGAARP-PF 299

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224071611|ref|XP_002303540.1| predicted protein [Populus trichocarpa] gi|222840972|gb|EEE78519.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 214/310 (69%), Positives = 244/310 (78%), Gaps = 9/310 (2%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P+TAHG  LPPPFHTRD  L  H  Q Q Q  H      + + S   +S LN+  KR+
Sbjct: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQHQFHHQQQQNSEDEQSG-SSSGLNKSLKRE 59

Query: 61  RNENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVM 120
           R+ENN +    EG+EL  +    GEITRRPRGRP+GSKNKPKPPIIITRDSANALR+H+M
Sbjct: 60  RDENNNSMGNSEGKELITSGSGEGEITRRPRGRPSGSKNKPKPPIIITRDSANALRTHLM 119

Query: 121 EIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAG 180
           E+A+GCDI++SV+ FARRRQRG+CI+SGTGTVTNVTLRQPASPGA+VTLHGRFEILSLAG
Sbjct: 120 EVADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLAG 179

Query: 181 SFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEE 240
           SFLPPPAPPAA+GLTIYLAGGQGQVVGGSVVG L ASGPVVIMAASF NAAYERLPLEEE
Sbjct: 180 SFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLTASGPVVIMAASFSNAAYERLPLEEE 239

Query: 241 ETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQLP 300
           + P+  + G   +GSP   VGQ QQQ QQ Q   +Q     NA   HGLPPNLL+S+QLP
Sbjct: 240 D-PQMPMQGGE-MGSPGA-VGQQQQQPQQQQVMAEQ-----NAQLFHGLPPNLLNSIQLP 291

Query: 301 AEPYWATGRP 310
           AE YWATGRP
Sbjct: 292 AEAYWATGRP 301

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058649|ref|XP_002299584.1| predicted protein [Populus trichocarpa] gi|222846842|gb|EEE84389.1| predicted protein [Populus trichocarpa]

 Score =  329 bits (843), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 205/311 (65%), Positives = 240/311 (77%), Gaps = 12/311 (3%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P+TAHG  LPPPFHTRD  L     Q  Q       + + +Q+    +S LN+  KR+
Sbjct: 1   MDPVTAHGHSLPPPFHTRDFQLHQQQQQQHQFHHQQQQNSEDEQSGS--SSGLNKSLKRE 58

Query: 61  RNENNIANAMEEGEELAVATGEG-GEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHV 119
           R+E+N +    EG+EL + +G+G GEITRRPRGRPAGSKNKPKPPIIITRDSANALR+H+
Sbjct: 59  RDESNNSMGNREGQEL-ITSGDGDGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHL 117

Query: 120 MEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLA 179
           ME+A+GCDI++SV+ FARRRQRG+CI+SGTGTVTNVTLRQPASPGA+VTLHGRFEILSLA
Sbjct: 118 MEVADGCDIVESVATFARRRQRGVCIMSGTGTVTNVTLRQPASPGAIVTLHGRFEILSLA 177

Query: 180 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE 239
           GSFLPPPAPPAA+GLTIYLAGGQGQVVGGSVVG L ASGPVVIMAASF NAAYERLPLEE
Sbjct: 178 GSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLTASGPVVIMAASFSNAAYERLPLEE 237

Query: 240 EETPEASIPGSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQL 299
           E+ P+  +                   QQQ Q  Q Q++ + NA   HGLPPNLL+S+QL
Sbjct: 238 ED-PQMPM-------QGGGMGSPGGVGQQQQQPQQHQVMAEQNAQLFHGLPPNLLNSIQL 289

Query: 300 PAEPYWATGRP 310
           PAE YWATGRP
Sbjct: 290 PAEAYWATGRP 300

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505681|ref|XP_003521618.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 218/324 (67%), Positives = 240/324 (74%), Gaps = 25/324 (7%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P+ A GRPLPPPF TRD+HL            H        QN+E D +   RGQKRD
Sbjct: 1   MDPVAAQGRPLPPPFLTRDLHLH---------PHHQFQPHHNNQNTE-DEAGNGRGQKRD 50

Query: 61  RNENNIANAME--------EGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSA 112
           R+EN               EG+E     G G ++ RRPRGRPAGSKNKPKPPIIITRDSA
Sbjct: 51  RDENVGGGGGATTPPHGGGEGKEPGSEDGGGSDMGRRPRGRPAGSKNKPKPPIIITRDSA 110

Query: 113 NALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGR 172
           NALRSHVMEI NGCDIM+SV+ FARRRQRGIC+LSG+GTVTNVTLRQPASP AVVTLHGR
Sbjct: 111 NALRSHVMEITNGCDIMESVTAFARRRQRGICLLSGSGTVTNVTLRQPASPSAVVTLHGR 170

Query: 173 FEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAY 232
           FEILSL+GSFLPPPAPPAASGL IYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAY
Sbjct: 171 FEILSLSGSFLPPPAPPAASGLAIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAY 230

Query: 233 ERLPLEEEETPEASIP--GSRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPN-ASFIHGL 289
           ERLPLEEEETP   +P  G+  LGSP +  G  QQ Q Q Q  QQQL+ DPN +S  HG+
Sbjct: 231 ERLPLEEEETP---VPYHGTEGLGSPGIP-GTQQQSQSQPQQQQQQLVGDPNSSSLFHGV 286

Query: 290 PPNLLSSVQLPAEPYWATGRPAPF 313
           P NLL+S+QLPAE YW      PF
Sbjct: 287 PQNLLNSIQLPAEGYWGGSARPPF 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537141|ref|XP_002509637.1| ESC, putative [Ricinus communis] gi|223549536|gb|EEF51024.1| ESC, putative [Ricinus communis]

 Score =  321 bits (822), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 212/312 (67%), Positives = 244/312 (78%), Gaps = 18/312 (5%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHH-HQQQQQNSEEDNSSLNRGQKR 59
           M+P+TAHG  LPPPFHTRD  L  H  Q QQ   HH   + + +Q+     + LN+ QKR
Sbjct: 1   MDPVTAHGHSLPPPFHTRDFQLHHHQQQQQQFSHHHQQQNSEDEQSGSSSGAGLNKSQKR 60

Query: 60  DRNENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHV 119
           +R+E +      EG+EL + +G  GEITRRPRGRPAGSKNKPKPPIIITRDSANALR+H+
Sbjct: 61  ERDEGS------EGKEL-IPSGGSGEITRRPRGRPAGSKNKPKPPIIITRDSANALRTHL 113

Query: 120 MEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLA 179
           ME+A+GCDI++SV+ FARRRQRG+ I+SGTGTVTNVTLRQPASPGAVVTLHGRFEILSLA
Sbjct: 114 MEVADGCDIVESVATFARRRQRGVSIMSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLA 173

Query: 180 GSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE 239
           GSFLPPPAPPAA+GLTIYLAGGQGQVVGGSVVG L+ASGPVVIMAASF NAAYERLPLEE
Sbjct: 174 GSFLPPPAPPAATGLTIYLAGGQGQVVGGSVVGTLIASGPVVIMAASFSNAAYERLPLEE 233

Query: 240 EETPEASIPG-SRPLGSPEVNVGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQ 298
           E   +A +P     +GSP   VG     QQQ    QQQ+L + NA    GL PNLL+S+Q
Sbjct: 234 E---DAQLPMQGGAIGSPGA-VG-----QQQQHQQQQQVLGEANAQLFQGLQPNLLNSIQ 284

Query: 299 LPAEPYWATGRP 310
           LPAE YWATGRP
Sbjct: 285 LPAEAYWATGRP 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563284|ref|XP_003549894.1| PREDICTED: putative DNA-binding protein ESCAROLA-like [Glycine max]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 203/314 (64%), Positives = 233/314 (74%), Gaps = 28/314 (8%)

Query: 1   MNPLTAHGRPLPPPFHTRDIHLQPHHHQFQQQQQHHHHHQQQQQNSEEDNSSLNRGQKRD 60
           M+P++AHG  LPPPFHTRD+HL        QQQQ  H  Q   Q +E++NS  +  QKR+
Sbjct: 1   MDPISAHGHSLPPPFHTRDLHLH------HQQQQQQHQFQSLNQATEDENSGSSGAQKRE 54

Query: 61  RNENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVM 120
           R EN+  N    GE          EITRRPRGRPAGSKNKPKPPIIITRDSANA+R+H+M
Sbjct: 55  REENSNGNNEGAGE---------AEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMM 105

Query: 121 EIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAG 180
           E+A+G DI++SVS FAR+RQRGICI+SGTGTVTNVTLRQPAS G+VVTLHGRFEILSL+G
Sbjct: 106 EVADGYDIVESVSEFARKRQRGICIMSGTGTVTNVTLRQPASSGSVVTLHGRFEILSLSG 165

Query: 181 SFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEE 240
           SFLPPPAPPAASGLTIYLAGGQGQVVGGSVVG LVASGPVVIMAASF NAAYERLPLE+E
Sbjct: 166 SFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMAASFSNAAYERLPLEDE 225

Query: 241 ETPEASIPGSRPLGSPEVN-VGQPQQQQQQSQSHQQQLLQDPNASFIHGLPPNLLSSVQL 299
           +     + G   +GSP  + VGQ            Q L  D  A   HGLPPNLL+SVQ+
Sbjct: 226 DPNSLQMQGGS-IGSPGASGVGQ-----------SQLLGGDATAPLFHGLPPNLLNSVQM 273

Query: 300 PAEPYWATGRPAPF 313
           P+EP+WA     PF
Sbjct: 274 PSEPFWAASTRPPF 287

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	313
TAIR|locus:2118051	339	AT4G12050 "AT4G12050" [Arabido	0.600	0.554	0.495	4.4e-56
TAIR|locus:2132639	324	AT4G22810 "AT4G22810" [Arabido	0.709	0.685	0.45	7.7e-52
TAIR|locus:2050946	317	AHL22 "AT2G45430" [Arabidopsis	0.961	0.949	0.428	2.4e-51
TAIR|locus:2129490	292	AT4G17800 [Arabidopsis thalian	0.485	0.520	0.496	4e-39
TAIR|locus:2045585	257	TEK "AT2G42940" [Arabidopsis t	0.539	0.657	0.479	8.3e-39
TAIR|locus:2101916	265	AHL18 "AT3G60870" [Arabidopsis	0.562	0.664	0.491	1.1e-37
TAIR|locus:2063469	285	GIK "GIANT KILLER" [Arabidopsi	0.485	0.533	0.493	2.7e-36
TAIR|locus:2122148	299	AGF1 "AT4G35390" [Arabidopsis	0.581	0.608	0.441	1.5e-35
TAIR|locus:2084958	315	AHL19 "AT-hook motif nuclear-l	0.562	0.558	0.461	7.4e-34
TAIR|locus:505006460	281	AHL20 "AT4G14465" [Arabidopsis	0.517	0.576	0.456	9.5e-34

TAIR|locus:2118051 AT4G12050 "AT4G12050" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 4.4e-56, Sum P(3) = 4.4e-56
 Identities = 101/204 (49%), Positives = 126/204 (61%)

Query:    45 NSEEDNSSLNRGQKRDRNE-----NNIANAME--EGEELAVATGEGG--------EITRR 89
             + ++  S LNR  K DR E     +NIAN     EG+E+++  GEGG        ++TRR
Sbjct:    60 HEQQGGSILNRSIKMDREETSDNMDNIANTNSGSEGKEMSLHGGEGGSGGGGSGEQMTRR 119

Query:    90 PRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGT 149
             PRGRPAGSKNKPK PIIITRDSANALR+HVMEI +GCDI+D ++ FARRRQRG+C++SGT
Sbjct:   120 PRGRPAGSKNKPKAPIIITRDSANALRTHVMEIGDGCDIVDCMATFARRRQRGVCVMSGT 179

Query:   150 GTVTNVTLRQPASP-GAVVTLHGRFEIXXXXXXXXXXXXXXXXXXXTIYXXXXXXXXXXX 208
             G+VTNVT+RQP SP G+VV+LHGRFEI                   ++Y           
Sbjct:   180 GSVTNVTIRQPGSPPGSVVSLHGRFEILSLSGSFLPPPAPPAATGLSVYLAGGQGQVVGG 239

Query:   209 XXXXXXXXXXXXXIMAASFGNAAY 232
                          +MAASF NAAY
Sbjct:   240 SVVGPLLCSGPVVVMAASFSNAAY 263

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132639 AT4G22810 "AT4G22810" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 7.7e-52, Sum P(2) = 7.7e-52
 Identities = 108/240 (45%), Positives = 134/240 (55%)

Query:    11 LPPPFHTRDIXXXXXXXXXXXXXXXXXXXXXXXXNSEEDNSSLNRGQKRDRNE-----NN 65
             LPPPFH RD                           ++  S  NR  K DR E     +N
Sbjct:    13 LPPPFHARDFQLHLQQQQQEFFLHHHQQQRNQTDGDQQGGSGGNRQIKMDREETSDNIDN 72

Query:    66 IAN-AMEEGEELAV--ATGEGG-------EITRRPRGRPAGSKNKPKPPIIITRDSANAL 115
             IAN +  EG+++ +   +GEGG       ++TRRPRGRPAGSKNKPKPPIIITRDSANAL
Sbjct:    73 IANNSGSEGKDIDIHGGSGEGGGGSGGDHQMTRRPRGRPAGSKNKPKPPIIITRDSANAL 132

Query:   116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPAS---PGAVVTLHGR 172
             R+HVMEI +GCD+++SV+ FARRRQRG+C++SGTG VTNVT+RQP S   PG+VV+LHGR
Sbjct:   133 RTHVMEIGDGCDLVESVATFARRRQRGVCVMSGTGNVTNVTIRQPGSHPSPGSVVSLHGR 192

Query:   173 FEIXXXXXXXXXXXXXXXXXXXTIYXXXXXXXXXXXXXXXXXXXXXXXXIMAASFGNAAY 232
             FEI                   ++Y                        +MAASF NAAY
Sbjct:   193 FEILSLSGSFLPPPAPPTATGLSVYLAGGQGQVVGGSVVGPLLCAGPVVVMAASFSNAAY 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2050946 AHL22 "AT2G45430" [Arabidopsis thaliana (taxid:3702)]

 Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
 Identities = 134/313 (42%), Positives = 155/313 (49%)

Query:     9 RPLPPPFHTRDIXXXXXXXXXXXXXXXXXXXXXXXXNSEEDNSSLNRGQKRDRNENNIAN 68
             R LPPPF +RD+                                 +R    D NE++ A 
Sbjct:     6 RSLPPPFLSRDLHLHPHHQFQHQQQQQQQNHGHDIDQHRIGGLKRDRDADIDPNEHSSAG 65

Query:    69 AMEEGEELAVATGEGG----EITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIAN 124
               +        +G GG     ITRRPRGRPAGSKNKPKPPIIITRDSANAL+SHVME+AN
Sbjct:    66 KDQSTPGSGGESGGGGGGDNHITRRPRGRPAGSKNKPKPPIIITRDSANALKSHVMEVAN 125

Query:   125 GCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPAS-PG---AVVTLHGRFEIXXXXX 180
             GCD+M+SV+ FARRRQRGIC+LSG G VTNVT+RQPAS PG   +VV LHGRFEI     
Sbjct:   126 GCDVMESVTVFARRRQRGICVLSGNGAVTNVTIRQPASVPGGGSSVVNLHGRFEILSLSG 185

Query:   181 XXXXXXXXXXXXXXTIYXXXXXXXXXXXXXXXXXXXXXXXXIMAASFGNAAYXXX--XXX 238
                           TIY                        IMAASFGNAAY        
Sbjct:   186 SFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLMASGPVVIMAASFGNAAYERLPLEED 245

Query:   239 XXXXXXASIPGSRPLGSPEVNVGXXXXXXXXXXXXXXXXXXDPNASFIHGLPPNLLSSVQ 298
                   A    +   G+  +  G                  DP  SFI GLPPNL++SVQ
Sbjct:   246 DQEEQTAGAVANNIDGNATMG-GGTQTQTQTQQQQQQQLMQDPT-SFIQGLPPNLMNSVQ 303

Query:   299 LPAEPYWATGRPA 311
             LPAE YW T RP+
Sbjct:   304 LPAEAYWGTPRPS 316

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009640 "photomorphogenesis" evidence=IMP

GO:0009647 "skotomorphogenesis" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2129490 AT4G17800 [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 76/153 (49%), Positives = 96/153 (62%)

Query:    81 GEGGEIT-RRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRR 139
             G GG++  RRPRGRP GSKNKPKPP+IITR+SAN LR+H++E+ NGCD+ D V+ +ARRR
Sbjct:    74 GGGGDVVGRRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVTNGCDVFDCVATYARRR 133

Query:   140 QRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEIXXXXXXXXXXXXXXXXXXXTIYXX 199
             QRGIC+LSG+GTVTNV++RQP++ GAVVTL G FEI                   TI+  
Sbjct:   134 QRGICVLSGSGTVTNVSIRQPSAAGAVVTLQGTFEILSLSGSFLPPPAPPGATSLTIFLA 193

Query:   200 XXXXXXXXXXXXXXXXXXXXXXIMAASFGNAAY 232
                                   ++AASF N AY
Sbjct:   194 GGQGQVVGGSVVGELTAAGPVIVIAASFTNVAY 226

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2045585 TEK "AT2G42940" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 8.3e-39, Sum P(2) = 8.3e-39
 Identities = 82/171 (47%), Positives = 106/171 (61%)

Query:    62 NENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVME 121
             N NN   A+ +  +  V++ EG E+ +RPRGRPAGSKNKPKPPII+T DS N+LR++ +E
Sbjct:    29 NTNNNLRALPKAVQ-PVSSIEG-EMAKRPRGRPAGSKNKPKPPIIVTHDSPNSLRANAVE 86

Query:   122 IANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEIXXXXXX 181
             I++GCDI +++S+FARR+QRG+CILS  G VTNVTLRQPAS GA+VTLHGR+EI      
Sbjct:    87 ISSGCDICETLSDFARRKQRGLCILSANGCVTNVTLRQPASSGAIVTLHGRYEILSLLGS 146

Query:   182 XXXXXXXXXXXXXTIYXXXXXXXXXXXXXXXXXXXXXXXXIMAASFGNAAY 232
                          TIY                        +MAASF NA +
Sbjct:   147 ILPPPAPLGITGLTIYLAGPQGQVVGGGVVGGLIASGPVVLMAASFMNAVF 197

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0010529 "negative regulation of transposition" evidence=IMP

GO:0031490 "chromatin DNA binding" evidence=IDA

GO:0035067 "negative regulation of histone acetylation" evidence=IMP

GO:1900111 "positive regulation of histone H3-K9 dimethylation" evidence=IMP

TAIR|locus:2101916 AHL18 "AT3G60870" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 89/181 (49%), Positives = 105/181 (58%)

Query:    54 NRG-QKRDRNENNIANAMEEGEELAV-ATGEGGEITRRPRGRPAGSKNKPKPPIIITRDS 111
             N G QKR R E  +      GE+LA   +GE     RRPRGRPAGSKNKPK PII+TRDS
Sbjct:    24 NAGRQKRGREEEGV-EPNNIGEDLATFPSGEENIKKRRPRGRPAGSKNKPKAPIIVTRDS 82

Query:   112 ANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHG 171
             ANA R HVMEI N CD+M+S++ FARRRQRG+C+L+G G VTNVT+RQP   G VV+LHG
Sbjct:    83 ANAFRCHVMEITNACDVMESLAVFARRRQRGVCVLTGNGAVTNVTVRQPG--GGVVSLHG 140

Query:   172 RFEIXXXXXXXXXXXXXXXXXXXTIYXXXXXXXXXXXXXXXXXXXXXXXXIMAASFGNAA 231
             RFEI                    +Y                        +MAASFGNA+
Sbjct:   141 RFEILSLSGSFLPPPAPPAASGLKVYLAGGQGQVIGGSVVGPLTASSPVVVMAASFGNAS 200

Query:   232 Y 232
             Y
Sbjct:   201 Y 201

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

TAIR|locus:2063469 GIK "GIANT KILLER" [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 75/152 (49%), Positives = 94/152 (61%)

Query:    81 GEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQ 140
             G G  + RRPRGRPAGSKNKPKPP+I+TR+SAN LR+H++E+ +GCD+ + +S +ARRRQ
Sbjct:    71 GSGDLVMRRPRGRPAGSKNKPKPPVIVTRESANTLRAHILEVGSGCDVFECISTYARRRQ 130

Query:   141 RGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEIXXXXXXXXXXXXXXXXXXXTIYXXX 200
             RGIC+LSGTGTVTNV++RQP + GAVVTL G FEI                   TI+   
Sbjct:   131 RGICVLSGTGTVTNVSIRQPTAAGAVVTLRGTFEILSLSGSFLPPPAPPGATSLTIFLAG 190

Query:   201 XXXXXXXXXXXXXXXXXXXXXIMAASFGNAAY 232
                                  +MAASF N AY
Sbjct:   191 AQGQVVGGNVVGELMAAGPVMVMAASFTNVAY 222

GO:0005737 "cytoplasm" evidence=ISM

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISS

GO:0005654 "nucleoplasm" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEP

GO:0048440 "carpel development" evidence=IMP

GO:0048653 "anther development" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:2122148 AGF1 "AT4G35390" [Arabidopsis thaliana (taxid:3702)]

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 83/188 (44%), Positives = 103/188 (54%)

Query:    47 EEDNSSLNRGQKRDRNENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPII 106
             +++N  LNR +  +      A     G   + AT  G    RRPRGRPAGSKNKPKPP I
Sbjct:    26 DQNNMELNRSEADEAK----AETTPTGGATSSATASGSSSGRRPRGRPAGSKNKPKPPTI 81

Query:   107 ITRDSANALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASP--G 164
             ITRDS N LRSHV+E+ +G DI ++VS +A RR  G+CI+SGTG VTNVT+RQPA+P  G
Sbjct:    82 ITRDSPNVLRSHVLEVTSGSDISEAVSTYATRRGCGVCIISGTGAVTNVTIRQPAAPAGG 141

Query:   165 AVVTLHGRFEIXXXXXXXXXXXXXXXXXXXTIYXXXXXXXXXXXXXXXXXXXXXXXXIMA 224
              V+TLHGRF+I                   T+Y                        +MA
Sbjct:   142 GVITLHGRFDILSLTGTALPPPAPPGAGGLTVYLAGGQGQVVGGNVAGSLIASGPVVLMA 201

Query:   225 ASFGNAAY 232
             ASF NA Y
Sbjct:   202 ASFANAVY 209

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IEP

TAIR|locus:2084958 AHL19 "AT-hook motif nuclear-localized protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 85/184 (46%), Positives = 103/184 (55%)

Query:    57 QKRDRNENNIANAMEEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALR 116
             Q+ D N N+       G++     G     TRRPRGRPAGSKNKPKPPI +TRDS NAL+
Sbjct:    49 QEVDNNNNDDDRDNLSGDDHEPREGAVEAPTRRPRGRPAGSKNKPKPPIFVTRDSPNALK 108

Query:   117 SHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQP------ASPG--AVVT 168
             SHVMEIA+G D++++++ FARRRQRGICILSG GTV NVTLRQP      A+PG  AV+ 
Sbjct:   109 SHVMEIASGTDVIETLATFARRRQRGICILSGNGTVANVTLRQPSTAAVAAAPGGAAVLA 168

Query:   169 LHGRFEIXXXXXXXXXXXXXXXXXXXTIYXXXXXXXXXXXXXXXXXXXXXXXXIMAASFG 228
             L GRFEI                   TIY                        ++AA+F 
Sbjct:   169 LQGRFEILSLTGSFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLMAAGPVMLIAATFS 228

Query:   229 NAAY 232
             NA Y
Sbjct:   229 NATY 232

GO:0005737 "cytoplasm" evidence=ISM

GO:0050832 "defense response to fungus" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

TAIR|locus:505006460 AHL20 "AT4G14465" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 74/162 (45%), Positives = 96/162 (59%)

Query:    71 EEGEELAVATGEGGEITRRPRGRPAGSKNKPKPPIIITRDSANALRSHVMEIANGCDIMD 130
             ++ EE     G    + RRPRGRP GSKNKPK PI +TRDS NALRSHV+EI++G D+ D
Sbjct:    50 DQDEEDDPREGAVEVVNRRPRGRPPGSKNKPKAPIFVTRDSPNALRSHVLEISDGSDVAD 109

Query:   131 SVSNFARRRQRGICILSGTGTVTNVTLRQPASPGAVVTLHGRFEIXXXXXXXXXXXXXXX 190
             ++++F+RRRQRG+C+LSGTG+V NVTLRQ A+PG VV+L GRFEI               
Sbjct:   110 TIAHFSRRRQRGVCVLSGTGSVANVTLRQAAAPGGVVSLQGRFEILSLTGAFLPGPSPPG 169

Query:   191 XXXXTIYXXXXXXXXXXXXXXXXXXXXXXXXIMAASFGNAAY 232
                 T+Y                        ++AA+F NA Y
Sbjct:   170 STGLTVYLAGVQGQVVGGSVVGPLLAIGSVMVIAATFSNATY 211

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0035005201 hypothetical protein (300 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	313
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	3e-44
cd11378	113	cd11378, DUF296, Domain of unknown function found	3e-32
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	0.002

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  146 bits (372), Expect = 3e-44
 Identities = 56/122 (45%), Positives = 73/122 (59%), Gaps = 6/122 (4%)

Query: 115 LRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQP---ASPGAVVTLHG 171
            R HV+ +  G D+++S+  FAR+R  G  +LSG G V+NVTLRQP   A    VVTL G
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 172 RFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVV-GPLVASGPVVIMAASFGNA 230
           RFEILSL+G+    P    +  L + LA   GQVVGG +  G + A+G VV+   SF NA
Sbjct: 61  RFEILSLSGTIS--PGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSFENA 118

Query: 231 AY 232
             
Sbjct: 119 RR 120

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  115 bits (291), Expect = 3e-32
 Identities = 43/115 (37%), Positives = 61/115 (53%), Gaps = 5/115 (4%)

Query: 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPAS---PGAVVTLHGR 172
           R  V+ +  G D+++S+  FAR       +LSG G V+N TLR P         VT  GR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 173 FEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASF 227
            EILSL+G+  P    P+   L + LA   G+V+GG ++G LVA G V ++    
Sbjct: 61  LEILSLSGNISPDDGKPSG-HLHVSLADSDGRVIGGHLLGALVA-GTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 21/107 (19%), Positives = 39/107 (36%), Gaps = 15/107 (14%)

Query: 125 GCDIMDSVSNFARRRQRGICILSGTGTVTNVTLR---QPASPGAVVTLHGRFEILSLAGS 181
           G D+   +  FA +      +++  G + +  LR           + ++   E+LSL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 182 FLPPPAPPAASG----LTIYLAGGQGQVVGGSVV-GPLVASGPVVIM 223
                   A       L   L    G  +GG ++ G +  +  V I 
Sbjct: 79  I-------ALDDPFVHLHAALGDENGITLGGHLLEGEVFPTAEVFIR 118

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	313
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.92
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	89.52

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=8.8e-30  Score=211.32  Aligned_cols=117  Identities=34%  Similarity=0.451  Sum_probs=106.0

Q ss_pred             cceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCC--CCCCCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830          115 LRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQP--ASPGAVVTLHGRFEILSLAGSFLPPPAPPAAS  192 (313)
Q Consensus       115 mr~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp--~~~~~~vtleG~FEILSLSGnisp~~~~~~~~  192 (313)
                      ||+|++||++||||+++|.+||+++++..|+|||+|+|++|+|+++  ...|.+++++|+|||+||+|||+..+ ..++.
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~-g~~~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPED-GKPFV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEET-TEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCC-CCCcc
Confidence            7999999999999999999999999999999999999999999998  44578899999999999999999843 45789


Q ss_pred             eEEEEEeCCCCcEEceecC-CceeeeeeEEEEEeeccccce
Q 047830          193 GLTIYLAGGQGQVVGGSVV-GPLVASGPVVIMAASFGNAAY  232 (313)
Q Consensus       193 HLHISLAg~dGqVvGGHL~-G~LIAAg~V~VvaaSF~n~~y  232 (313)
                      ||||+|++.||+|+||||. |.++++.||+|+..++.+.+|
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v~~t~Ev~i~~~~~~~~~~  120 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTVFATAEVVITELSGINFTR  120 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEEEEEEEEEEEEETTEEEEE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEEeEEEEEEEEEecCccccC
Confidence            9999999999999999999 889999999999998887664

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.92  E-value=3.6e-24  Score=185.11  Aligned_cols=122  Identities=16%  Similarity=0.249  Sum_probs=109.5

Q ss_pred             CCcceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCC---CCCeEEeeceeeEEeeeecccCCCCCC
Q 047830          113 NALRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPAS---PGAVVTLHGRFEILSLAGSFLPPPAPP  189 (313)
Q Consensus       113 ~~mr~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~---~~~~vtleG~FEILSLSGnisp~~~~~  189 (313)
                      ..-|.|++||++|+|+++.|.+||+++++.+++++|+|+|++++|++++.   .|.++++.++||||||.|||+..+   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            45689999999999999999999999999999999999999999999874   589999999999999999999876   


Q ss_pred             CCCeEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCC
Q 047830          190 AASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLE  238 (313)
Q Consensus       190 ~~~HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e  238 (313)
                      ++.|||++|++++|.++||||++..+.. +++|++-......+.|.+++
T Consensus        84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~  131 (141)
T COG1661          84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDP  131 (141)
T ss_pred             CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCC
Confidence            6999999999999999999999776664 45556656778889998877

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=89.52  E-value=0.15  Score=28.40  Aligned_cols=13  Identities=46%  Similarity=0.851  Sum_probs=4.2

Q ss_pred             CCCCCCCCCCCCC
Q 047830           88 RRPRGRPAGSKNK  100 (313)
Q Consensus        88 rrpRGRP~GSknK  100 (313)
                      +|+||||+.+.+|
T Consensus         1 ~r~RGRP~k~~~~   13 (13)
T PF02178_consen    1 KRKRGRPRKNAKK   13 (13)
T ss_dssp             S--SS--TT----
T ss_pred             CCcCCCCccccCC
Confidence            5899999987654

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	313
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	3e-33
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	8e-27
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	1e-21
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	2e-13
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	6e-10
3htn_A	149	Putative DNA binding protein; DUF269 family protei	1e-09

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score =  119 bits (298), Expect = 3e-33
 Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 100 KPKPPIIITRDSANALRSHVMEIANGCDIMDSVSNFARRRQ-RGICILSGTGTVTNVTLR 158
                + ++  +A+  R + + +  G ++   +  F ++ Q R   I   TG++T+V LR
Sbjct: 3   GDPNSMTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALR 62

Query: 159 QPASPGAVVTLHGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASG 218
                 A  +L G FE++SL G+            L + ++   G ++GG ++       
Sbjct: 63  YA-GQEATTSLTGTFEVISLNGTLELTGE-----HLHLAVSDPYGVMLGGHMMPGCTVRT 116

Query: 219 PVVIMAASFGNAAYERLPLEEEETPE 244
            + ++        + R P       E
Sbjct: 117 TLELVIGELPALTFSRQPCAISGYDE 142

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score =  101 bits (253), Expect = 8e-27
 Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 7/142 (4%)

Query: 115 LRSHVMEIANGCDIMDSVSNFARRRQ-RGICILSGTGTVTNVTLRQPASPGAVVTLHGRF 173
           +    + +  G D+   +    ++ +     I S  G ++ + +R   S    + +   F
Sbjct: 2   IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPF 60

Query: 174 EILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYE 233
           EILSL+G+            L I +A  QG+V GG ++   + +    +M   +    + 
Sbjct: 61  EILSLSGTLTYQHC-----HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFT 115

Query: 234 RLPLEEEETPEASIPGSRPLGS 255
           R         E  +  +     
Sbjct: 116 REFDPNTGYSELVVSAAALEHH 137

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 88.1 bits (218), Expect = 1e-21
 Identities = 27/126 (21%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLR---QPASPGAVVTLHGR 172
           R+++  +  G +++  + NF ++      I++G GT+ N  +    +      V+ L G 
Sbjct: 10  RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGS 69

Query: 173 FEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAY 232
           +E++SL G+       P      + L   +G V GG +V   V    + +          
Sbjct: 70  YELISLIGNVSLKDGEPFV-HAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQ--ELKGEKI 126

Query: 233 ERLPLE 238
           ER P +
Sbjct: 127 ERKPTK 132

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 7/127 (5%)

Query: 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLR---QPASPGAVVTLHGR 172
           +  ++ +  G D++  +  F   +      +S  G V +  +    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 173 FEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAY 232
            EILSL+G+     + P        L G  G+V GG +    V +  V ++       A 
Sbjct: 70  LEILSLSGNVSMKDSKPFCH--IHVLLGKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 233 ERLPLEE 239
           ER   E+
Sbjct: 126 ERAFDEQ 132

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 55.7 bits (134), Expect = 6e-10
 Identities = 21/126 (16%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLR--QPASPGAVVTLHGRF 173
             ++M + +G +++ ++   AR          G G ++  T               +   
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 174 EILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYE 233
           E+ ++ GS       P+       +  G  Q  GG ++G  V +G   I    +     +
Sbjct: 73  EMANMTGSIAWKEGKPSI-HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQRL-D 130

Query: 234 RLPLEE 239
           R    E
Sbjct: 131 RFVDPE 136

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 55.0 bits (132), Expect = 1e-09
 Identities = 20/128 (15%), Positives = 45/128 (35%), Gaps = 8/128 (6%)

Query: 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLR---QPASPGAVVTLHGR 172
             +++ I N  +I+ +++ F + +      ++G G +  +TLR            T   +
Sbjct: 16  NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQ 75

Query: 173 FEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVV-GPLVASGPVVIMAASFGNAA 231
            EI +L G+            L I +       + G ++      +G  V+      +  
Sbjct: 76  MEISNLTGNISSMNEQVYL-HLHITVGRSDYSALAGHLLSAIQNGAGEFVVED---YSER 131

Query: 232 YERLPLEE 239
             R    +
Sbjct: 132 ISRTYNPD 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	313
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.96
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.96
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.95
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.95
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.94
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.92
2ezd_A	26	High mobility group protein HMG-I/HMG-Y; DNA bindi	97.52

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.96  E-value=2.5e-28  Score=209.86  Aligned_cols=126  Identities=21%  Similarity=0.384  Sum_probs=110.8

Q ss_pred             eecCCCCCcceEEEEecCCCcHHHHHHHHHHhcCc-cEEEEEEEeeeceEEEeCCCCCCCeEEeeceeeEEeeeecccCC
Q 047830          107 ITRDSANALRSHVMEIANGCDIMDSVSNFARRRQR-GICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPP  185 (313)
Q Consensus       107 it~~s~~~mr~hVIrL~~GeDIvesI~~FArr~~~-av~VLSgiGAVsnVTLRqp~~~~~~vtleG~FEILSLSGnisp~  185 (313)
                      ++.++++.+|+|++||++|+||+++|.+||+++++ ++||+|++|+|++|+||+++... +++++|+|||+||+|||++.
T Consensus        10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~   88 (154)
T 2hx0_A           10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT   88 (154)
T ss_dssp             --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred             eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence            45678889999999999999999999999999986 67888999999999999998654 68899999999999999983


Q ss_pred             CCCCCCCeEEEEEeCCCCcEEceecCC-ceeeeeeEEEEEeeccccceeeccCCC
Q 047830          186 PAPPAASGLTIYLAGGQGQVVGGSVVG-PLVASGPVVIMAASFGNAAYERLPLEE  239 (313)
Q Consensus       186 ~~~~~~~HLHISLAg~dGqVvGGHL~G-~LIAAg~V~VvaaSF~n~~yeRlP~e~  239 (313)
                           ..||||+|++.+|+|+||||++ ++|. .+++|++..|....|+|+|+++
T Consensus        89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~-~t~Ev~i~~~~~~~~~R~~D~e  137 (154)
T 2hx0_A           89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVR-TTLELVIGELPALTFSRQPCAI  137 (154)
T ss_dssp             -----EEEEEEEEECTTSCEEEEEECTTCEEE-EEEEEEEEECTTEEEEEEECTT
T ss_pred             -----CCEEEEEEECCCCCEEccccCCCCcEE-EEEEEEEEEccCceEEEecCCC
Confidence                 5999999999999999999996 4554 5677777889999999999765

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.96  E-value=3.8e-28  Score=206.00  Aligned_cols=119  Identities=21%  Similarity=0.351  Sum_probs=106.1

Q ss_pred             CcceEEEEecCCCcHHHHHHHHHHhcCc-cEEEEEEEeeeceEEEeCCCCCCCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830          114 ALRSHVMEIANGCDIMDSVSNFARRRQR-GICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPPAAS  192 (313)
Q Consensus       114 ~mr~hVIrL~~GeDIvesI~~FArr~~~-av~VLSgiGAVsnVTLRqp~~~~~~vtleG~FEILSLSGnisp~~~~~~~~  192 (313)
                      .||+|++||++|+||+++|.+||+++++ ++||++++|+|++|+||+++... +++++|+|||+||+|||++.     ..
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~   74 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC   74 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence            3899999999999999999999999986 67888999999999999998644 68899999999999999983     59


Q ss_pred             eEEEEEeCCCCcEEceecCC-ceeeeeeEEEEEeeccccceeeccCCC
Q 047830          193 GLTIYLAGGQGQVVGGSVVG-PLVASGPVVIMAASFGNAAYERLPLEE  239 (313)
Q Consensus       193 HLHISLAg~dGqVvGGHL~G-~LIAAg~V~VvaaSF~n~~yeRlP~e~  239 (313)
                      ||||+|+|.||+|+||||++ ++| ..+++|++..|.+..|+|+|+++
T Consensus        75 HlHisl~~~~G~v~GGHl~~g~~V-~~t~Ev~i~~~~~~~~~R~~D~e  121 (142)
T 2p6y_A           75 HLHIAVADAQGRVWGGHLLEGNLI-NTTAELMIHHYPQHHFTREFDPN  121 (142)
T ss_dssp             EEEEEEECTTSCEEEEEECTTCEE-CC-EEEEEEECTTEEEEEEEETT
T ss_pred             EEEEEEECCCCCEEccccCCCCeE-EEEEEEEEEEccCCeEEEeeCCC
Confidence            99999999999999999996 455 45688888899999999999765

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.95  E-value=8.5e-29  Score=209.44  Aligned_cols=120  Identities=23%  Similarity=0.380  Sum_probs=106.7

Q ss_pred             ceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCCC---CCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830          116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASP---GAVVTLHGRFEILSLAGSFLPPPAPPAAS  192 (313)
Q Consensus       116 r~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~~---~~~vtleG~FEILSLSGnisp~~~~~~~~  192 (313)
                      |+|++||++|+||+++|.+||+++++..|+++++|+|++|+||+++..   |..++++|+|||+||+|||++.++ +++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g-~p~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDG-EPFV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETT-EEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCC-Ccee
Confidence            799999999999999999999999988888899999999999998653   567899999999999999999654 4689


Q ss_pred             eEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCCC
Q 047830          193 GLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE  239 (313)
Q Consensus       193 HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e~  239 (313)
                      ||||+|+|.||+|+||||+..++++.|  |++.+|.+..|+|+| ++
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~v~t~E--v~i~~~~~~~~~R~~-~e  132 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGEVFVAE--IFLQELKGEKIERKP-TK  132 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEEEEE--EEEEEEEESCCEEBC-CT
T ss_pred             eEEEEEECCCCCEeCCCCCCCceEEEE--EEEEEcCCCeEEEeC-CC
Confidence            999999999999999999955566544  577889999999999 44

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.95  E-value=1.9e-28  Score=207.97  Aligned_cols=121  Identities=19%  Similarity=0.251  Sum_probs=108.7

Q ss_pred             cceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCCC---CCeEEeeceeeEEeeeecccCCCCCCCC
Q 047830          115 LRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASP---GAVVTLHGRFEILSLAGSFLPPPAPPAA  191 (313)
Q Consensus       115 mr~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~~---~~~vtleG~FEILSLSGnisp~~~~~~~  191 (313)
                      -++|++||++|+||+++|.+||+++++..|+|+++|+|++|+||+++..   |.+++++|+|||+||+|||++.++ +++
T Consensus         9 gr~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg-~p~   87 (146)
T 2h6l_A            9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS-KPF   87 (146)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT-EEE
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCC-Cce
Confidence            3699999999999999999999999988777799999999999998754   468999999999999999999654 468


Q ss_pred             CeEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCCC
Q 047830          192 SGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE  239 (313)
Q Consensus       192 ~HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e~  239 (313)
                      .||||+|+ .||+|+||||++.+|  .+++|++.+|.+..|+|+|+++
T Consensus        88 ~HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e  132 (146)
T 2h6l_A           88 CHIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ  132 (146)
T ss_dssp             EEEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred             eeEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence            99999999 999999999997766  4777888899999999999765

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.94  E-value=2.4e-27  Score=202.78  Aligned_cols=120  Identities=17%  Similarity=0.256  Sum_probs=104.7

Q ss_pred             ceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCC---CCCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830          116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPAS---PGAVVTLHGRFEILSLAGSFLPPPAPPAAS  192 (313)
Q Consensus       116 r~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~---~~~~vtleG~FEILSLSGnisp~~~~~~~~  192 (313)
                      |.|++||++|+||+++|.+||+++++..|+++++|+|++|+|++++.   .|..++++|+|||+||+|||++.++ .++.
T Consensus        16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG-~p~~   94 (149)
T 3htn_A           16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNE-QVYL   94 (149)
T ss_dssp             TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETT-EEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCC-CceE
Confidence            89999999999999999999999999988889999999999999764   3678899999999999999999754 5689


Q ss_pred             eEEEEEeCCCCcEEceecCCcee-eeeeEEEEEeeccccceeeccCCC
Q 047830          193 GLTIYLAGGQGQVVGGSVVGPLV-ASGPVVIMAASFGNAAYERLPLEE  239 (313)
Q Consensus       193 HLHISLAg~dGqVvGGHL~G~LI-AAg~V~VvaaSF~n~~yeRlP~e~  239 (313)
                      ||||+|++.+|+|+||||+...| .+.||+|.  .+.. .++|.++++
T Consensus        95 HlH~sl~~~~G~v~gGHl~~g~V~~t~Ei~i~--~~~~-~~~R~~D~~  139 (149)
T 3htn_A           95 HLHITVGRSDYSALAGHLLSAIQNGAGEFVVE--DYSE-RISRTYNPD  139 (149)
T ss_dssp             EEEEEEECTTSBEEEEEEEEEEEEEEEEEEEE--ECCS-CCEEEEETT
T ss_pred             EEEEEEECCCCCEEeEEeCCCEEEEEEEEEEE--EcCC-eeEEeeCCc
Confidence            99999999999999999996544 35555554  5666 789988765

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.92  E-value=2.2e-25  Score=190.01  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=103.5

Q ss_pred             ceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCCC---CCeEEeeceeeEEeeeecccCCCCCCCCC
Q 047830          116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPASP---GAVVTLHGRFEILSLAGSFLPPPAPPAAS  192 (313)
Q Consensus       116 r~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~~---~~~vtleG~FEILSLSGnisp~~~~~~~~  192 (313)
                      +.+++||++|+||+++|.+||+++++..++++++|++++++|++++..   |...+++ ++||+||+|||++.+ +.++.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G~p~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-GKPSI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-TEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-CCceE
Confidence            679999999999999999999999999999999999999999987642   5667888 899999999999866 46799


Q ss_pred             eEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCCC
Q 047830          193 GLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE  239 (313)
Q Consensus       193 HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e~  239 (313)
                      ||||+|++.+|+|+||||+...|.+++++|++..+. ..+.|.++++
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~  136 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE  136 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence            999999999999999999965555444555555554 5999988664

>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*

Probab=97.52  E-value=3.8e-05  Score=48.56  Aligned_cols=18  Identities=61%  Similarity=1.003  Sum_probs=15.5

Q ss_pred             CCCCCCCCCCCCCCCCCC
Q 047830           85 EITRRPRGRPAGSKNKPK  102 (313)
Q Consensus        85 ~~~rrpRGRP~GSknKpk  102 (313)
                      ...|||||||.|||||.-
T Consensus         2 ptpKrpRgRpkGSKNk~~   19 (26)
T 2ezd_A            2 PTPKRPRGRPKGSKNKGA   19 (26)
T ss_dssp             CSCCCCSSCCTTCCCCSC
T ss_pred             CCCcCCCCCcCcccccCc
Confidence            357999999999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	313
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	6e-33
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	4e-23

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score =  116 bits (292), Expect = 6e-33
 Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 7/135 (5%)

Query: 111 SANALRSHVMEIANGCDIMDSVSNFARRRQ-RGICILSGTGTVTNVTLRQPASPGAVVTL 169
           +A+  R + + +  G ++   +  F ++ Q R   I   TG++T+V LR         +L
Sbjct: 2   NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSL 60

Query: 170 HGRFEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGN 229
            G FE++SL G+            L + ++   G ++GG ++        + ++      
Sbjct: 61  TGTFEVISLNGTLELT-----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPA 115

Query: 230 AAYERLPLEEEETPE 244
             + R P       E
Sbjct: 116 LTFSRQPCAISGYDE 130

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 90.8 bits (225), Expect = 4e-23
 Identities = 27/127 (21%), Positives = 49/127 (38%), Gaps = 7/127 (5%)

Query: 116 RSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLR---QPASPGAVVTLHGR 172
           +  ++ +  G D++  +  F   +      +S  G V +  +    Q         L   
Sbjct: 10  KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEP 69

Query: 173 FEILSLAGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAY 232
            EILSL+G+     + P    + + L G  G+V GG +    V +  V ++       A 
Sbjct: 70  LEILSLSGNVSMKDSKPFC-HIHVLL-GKDGEVYGGHLFSAEVFACEVFVLP--LSGEAP 125

Query: 233 ERLPLEE 239
           ER   E+
Sbjct: 126 ERAFDEQ 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	313
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.95
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.93

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.95  E-value=6.7e-28  Score=201.40  Aligned_cols=124  Identities=21%  Similarity=0.370  Sum_probs=112.4

Q ss_pred             CCCCcceEEEEecCCCcHHHHHHHHHHhcCc-cEEEEEEEeeeceEEEeCCCCCCCeEEeeceeeEEeeeecccCCCCCC
Q 047830          111 SANALRSHVMEIANGCDIMDSVSNFARRRQR-GICILSGTGTVTNVTLRQPASPGAVVTLHGRFEILSLAGSFLPPPAPP  189 (313)
Q Consensus       111 s~~~mr~hVIrL~~GeDIvesI~~FArr~~~-av~VLSgiGAVsnVTLRqp~~~~~~vtleG~FEILSLSGnisp~~~~~  189 (313)
                      +.+..|.|++||++||||+++|.+||+++++ ++||++++|++++|+|++|+. .....++|+|||+||+|||.+.+   
T Consensus         2 ~~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~---   77 (136)
T d2hx0a1           2 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTG---   77 (136)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTE---
T ss_pred             CCCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCC---
Confidence            5678999999999999999999999999985 788999999999999999874 45668999999999999998743   


Q ss_pred             CCCeEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCCCC
Q 047830          190 AASGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEEE  240 (313)
Q Consensus       190 ~~~HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e~~  240 (313)
                        .||||+|++.+|+|+||||++.+++..+++|++..|.+..|+|.++++.
T Consensus        78 --~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~~~~R~~D~~t  126 (136)
T d2hx0a1          78 --EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAIS  126 (136)
T ss_dssp             --EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTTT
T ss_pred             --CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCCceEEccCCCC
Confidence              7999999999999999999988788888999999999999999996653

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.93  E-value=7.4e-27  Score=194.00  Aligned_cols=121  Identities=20%  Similarity=0.275  Sum_probs=107.7

Q ss_pred             cceEEEEecCCCcHHHHHHHHHHhcCccEEEEEEEeeeceEEEeCCCC---CCCeEEeeceeeEEeeeecccCCCCCCCC
Q 047830          115 LRSHVMEIANGCDIMDSVSNFARRRQRGICILSGTGTVTNVTLRQPAS---PGAVVTLHGRFEILSLAGSFLPPPAPPAA  191 (313)
Q Consensus       115 mr~hVIrL~~GeDIvesI~~FArr~~~av~VLSgiGAVsnVTLRqp~~---~~~~vtleG~FEILSLSGnisp~~~~~~~  191 (313)
                      =|.|++||++||||+++|.+||+++++..|++|++|++++|+|++++.   .|..+.++|+|||+||+|||...++ .++
T Consensus         9 gr~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g-~p~   87 (138)
T d2h6la1           9 GKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDS-KPF   87 (138)
T ss_dssp             CEEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETT-EEE
T ss_pred             CCEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCCC-CcE
Confidence            389999999999999999999999999999999999999999998654   3778899999999999999998775 468


Q ss_pred             CeEEEEEeCCCCcEEceecCCceeeeeeEEEEEeeccccceeeccCCC
Q 047830          192 SGLTIYLAGGQGQVVGGSVVGPLVASGPVVIMAASFGNAAYERLPLEE  239 (313)
Q Consensus       192 ~HLHISLAg~dGqVvGGHL~G~LIAAg~V~VvaaSF~n~~yeRlP~e~  239 (313)
                      .|+|+++++ +|+++||||+.+++.+++++|+  ++.+..+.|.|+++
T Consensus        88 ~HlH~~~~~-~g~~~gGHl~~~~v~~~e~~i~--~~~~~~~~R~~D~~  132 (138)
T d2h6la1          88 CHIHVLLGK-DGEVYGGHLFSAEVFACEVFVL--PLSGEAPERAFDEQ  132 (138)
T ss_dssp             EEEEEEEEE-BTEEEEEEEEEEEEEEEEEEEE--ECBSCCCBEEECTT
T ss_pred             EEEEEEECC-CCCEEEEEeCccEEEEEEEEEE--EecCCceEEecCCc
Confidence            999999997 7999999999877777666555  58999999998654